Query 039967
Match_columns 445
No_of_seqs 173 out of 3099
Neff 11.0
Searched_HMMs 29240
Date Mon Mar 25 05:33:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039967.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039967hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1.7E-51 5.7E-56 417.3 37.0 436 5-443 198-723 (768)
2 3rgz_A Protein brassinosteroid 100.0 1.3E-50 4.6E-55 410.6 34.5 438 4-444 175-700 (768)
3 3t6q_A CD180 antigen; protein- 100.0 6.7E-48 2.3E-52 382.6 33.6 429 8-438 34-537 (606)
4 3t6q_A CD180 antigen; protein- 100.0 1.8E-47 6E-52 379.6 36.4 438 2-441 52-564 (606)
5 1ziw_A TOLL-like receptor 3; i 100.0 6.5E-45 2.2E-49 365.9 38.2 434 6-439 72-599 (680)
6 1ziw_A TOLL-like receptor 3; i 100.0 9.5E-45 3.3E-49 364.7 38.3 439 3-442 45-577 (680)
7 3vq2_A TLR4, TOLL-like recepto 100.0 1.8E-45 6.1E-50 365.2 31.5 426 7-441 32-562 (606)
8 2z63_A TOLL-like receptor 4, v 100.0 3.9E-45 1.3E-49 360.4 32.0 427 7-442 28-536 (570)
9 3vq2_A TLR4, TOLL-like recepto 100.0 1.4E-44 4.8E-49 358.8 32.4 403 2-414 51-559 (606)
10 3j0a_A TOLL-like receptor 5; m 100.0 9.4E-44 3.2E-48 364.1 30.4 431 6-443 23-545 (844)
11 2z63_A TOLL-like receptor 4, v 100.0 2.3E-41 8E-46 333.5 34.1 425 9-444 9-514 (570)
12 3j0a_A TOLL-like receptor 5; m 100.0 1.4E-41 4.9E-46 348.0 33.6 430 10-443 7-523 (844)
13 4eco_A Uncharacterized protein 100.0 9.1E-42 3.1E-46 338.3 26.2 408 7-438 81-601 (636)
14 2z7x_B TOLL-like receptor 1, v 100.0 4E-41 1.4E-45 327.7 27.9 418 10-440 3-484 (520)
15 2z81_A CD282 antigen, TOLL-lik 100.0 1E-41 3.5E-46 334.3 23.4 425 7-441 26-514 (549)
16 4eco_A Uncharacterized protein 100.0 4.1E-41 1.4E-45 333.7 20.3 403 31-444 81-585 (636)
17 4ecn_A Leucine-rich repeat pro 100.0 6.5E-40 2.2E-44 330.3 27.4 319 109-438 481-841 (876)
18 2z81_A CD282 antigen, TOLL-lik 100.0 5.2E-39 1.8E-43 315.1 28.7 425 6-444 4-493 (549)
19 3v47_A TOLL-like receptor 5B a 100.0 3.6E-38 1.2E-42 301.9 30.7 372 10-441 13-412 (455)
20 4ecn_A Leucine-rich repeat pro 100.0 8.7E-39 3E-43 322.1 25.0 367 41-432 435-859 (876)
21 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 7.7E-38 2.6E-42 307.0 28.8 424 5-441 29-514 (562)
22 2z7x_B TOLL-like receptor 1, v 100.0 5.2E-38 1.8E-42 305.8 20.1 394 7-414 21-482 (520)
23 4g8a_A TOLL-like receptor 4; l 100.0 4.6E-36 1.6E-40 299.6 32.8 423 8-437 53-580 (635)
24 1o6v_A Internalin A; bacterial 100.0 4.7E-35 1.6E-39 280.4 31.5 345 6-414 45-389 (466)
25 3v47_A TOLL-like receptor 5B a 100.0 3.9E-36 1.3E-40 287.8 23.6 360 7-413 30-408 (455)
26 1jl5_A Outer protein YOPM; leu 100.0 7.7E-35 2.6E-39 276.4 26.3 390 5-443 9-435 (454)
27 1jl5_A Outer protein YOPM; leu 100.0 1.4E-34 4.8E-39 274.6 26.0 373 29-445 9-419 (454)
28 4g8a_A TOLL-like receptor 4; l 100.0 8.9E-34 3.1E-38 283.1 32.4 410 31-444 52-562 (635)
29 2id5_A Lingo-1, leucine rich r 100.0 2.8E-34 9.6E-39 276.3 25.2 296 118-413 33-333 (477)
30 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 9.4E-35 3.2E-39 285.1 21.8 392 7-413 52-510 (562)
31 3bz5_A Internalin-J, INLJ; leu 100.0 1.2E-33 4.2E-38 268.3 26.8 353 4-443 39-393 (457)
32 1o6v_A Internalin A; bacterial 100.0 7.9E-33 2.7E-37 265.0 31.2 326 3-390 64-389 (466)
33 2id5_A Lingo-1, leucine rich r 100.0 1.4E-33 4.8E-38 271.4 24.5 321 34-390 14-334 (477)
34 4fmz_A Internalin; leucine ric 100.0 6.8E-32 2.3E-36 248.9 28.6 285 113-437 62-346 (347)
35 3o6n_A APL1; leucine-rich repe 100.0 2.4E-32 8.2E-37 255.8 25.1 308 94-438 46-353 (390)
36 4fmz_A Internalin; leucine ric 100.0 6.6E-31 2.3E-35 242.2 29.2 308 50-413 39-346 (347)
37 3o6n_A APL1; leucine-rich repe 100.0 1.8E-31 6.3E-36 249.8 25.3 269 109-414 85-353 (390)
38 3oja_B Anopheles plasmodium-re 100.0 2.1E-31 7E-36 262.7 25.2 308 94-438 52-359 (597)
39 3bz5_A Internalin-J, INLJ; leu 100.0 3.2E-30 1.1E-34 244.9 26.3 327 25-439 36-370 (457)
40 3oja_B Anopheles plasmodium-re 100.0 1.9E-30 6.5E-35 255.8 25.4 309 54-413 50-358 (597)
41 2ft3_A Biglycan; proteoglycan, 100.0 3.9E-29 1.3E-33 228.6 25.8 288 118-435 34-331 (332)
42 1xku_A Decorin; proteoglycan, 100.0 4.9E-29 1.7E-33 227.9 25.6 288 119-435 33-330 (330)
43 1xku_A Decorin; proteoglycan, 100.0 7.4E-29 2.5E-33 226.7 25.5 268 118-411 53-330 (330)
44 2ft3_A Biglycan; proteoglycan, 100.0 5.1E-29 1.7E-33 227.9 23.8 268 117-411 54-331 (332)
45 1z7x_W Ribonuclease inhibitor; 100.0 1.3E-33 4.3E-38 270.9 -7.3 303 118-439 86-442 (461)
46 1z7x_W Ribonuclease inhibitor; 100.0 6.3E-32 2.2E-36 259.0 -2.9 346 94-439 4-413 (461)
47 1ogq_A PGIP-2, polygalacturona 100.0 6.9E-29 2.4E-33 224.5 17.2 249 142-436 51-303 (313)
48 1ogq_A PGIP-2, polygalacturona 100.0 1.5E-28 5.1E-33 222.3 17.1 251 117-413 50-304 (313)
49 3ogk_B Coronatine-insensitive 100.0 2.1E-30 7.2E-35 256.4 1.7 380 53-434 110-548 (592)
50 3ogk_B Coronatine-insensitive 99.9 7.1E-29 2.4E-33 245.4 4.0 389 49-439 67-528 (592)
51 2z80_A TOLL-like receptor 2, v 99.9 4.9E-27 1.7E-31 216.6 12.7 281 113-413 27-314 (353)
52 2z66_A Variable lymphocyte rec 99.9 8.2E-26 2.8E-30 204.3 19.3 241 145-413 11-261 (306)
53 3zyj_A Leucine-rich repeat-con 99.9 1.8E-25 6.1E-30 212.4 21.9 248 143-437 45-292 (440)
54 3zyi_A Leucine-rich repeat-con 99.9 2.3E-25 7.8E-30 212.4 22.6 248 143-437 56-303 (452)
55 2z80_A TOLL-like receptor 2, v 99.9 5.8E-26 2E-30 209.4 17.5 277 97-391 35-316 (353)
56 1ozn_A Reticulon 4 receptor; N 99.9 1.3E-25 4.3E-30 200.8 18.9 268 120-434 14-284 (285)
57 2z66_A Variable lymphocyte rec 99.9 1.4E-25 4.7E-30 202.8 19.3 261 117-421 28-295 (306)
58 1ozn_A Reticulon 4 receptor; N 99.9 1.7E-25 5.7E-30 200.0 19.1 235 190-444 33-268 (285)
59 2p1m_B Transport inhibitor res 99.9 1.5E-28 5.2E-33 243.2 -2.1 379 53-435 103-542 (594)
60 4fcg_A Uncharacterized protein 99.9 3.1E-25 1.1E-29 201.7 18.8 234 164-436 80-313 (328)
61 4fcg_A Uncharacterized protein 99.9 5E-25 1.7E-29 200.4 20.1 221 6-245 80-309 (328)
62 3zyj_A Leucine-rich repeat-con 99.9 4.5E-24 1.5E-28 202.7 24.4 242 119-365 45-292 (440)
63 3zyi_A Leucine-rich repeat-con 99.9 4.3E-24 1.5E-28 203.5 23.2 230 94-325 76-306 (452)
64 2p1m_B Transport inhibitor res 99.9 4.8E-27 1.6E-31 232.4 -0.7 386 50-438 61-520 (594)
65 3o53_A Protein LRIM1, AGAP0063 99.9 1.2E-25 4.1E-30 203.9 7.7 263 118-413 11-275 (317)
66 3g06_A SSPH2 (leucine-rich rep 99.9 3.6E-23 1.2E-27 202.2 24.7 265 117-421 40-305 (622)
67 3o53_A Protein LRIM1, AGAP0063 99.9 1.5E-25 5.2E-30 203.2 7.1 263 146-441 15-280 (317)
68 3g06_A SSPH2 (leucine-rich rep 99.9 7.9E-23 2.7E-27 199.8 24.6 267 94-400 41-308 (622)
69 1wwl_A Monocyte differentiatio 99.9 6.3E-25 2.1E-29 198.7 4.3 253 161-439 39-311 (312)
70 2z62_A TOLL-like receptor 4, v 99.9 2.9E-22 9.8E-27 178.1 19.4 208 214-441 29-241 (276)
71 1wwl_A Monocyte differentiatio 99.9 6.2E-24 2.1E-28 192.1 8.0 201 164-389 94-309 (312)
72 3oja_A Leucine-rich immune mol 99.9 1.1E-23 3.9E-28 201.7 9.9 233 140-408 33-270 (487)
73 2o6q_A Variable lymphocyte rec 99.9 1.2E-21 4.1E-26 173.3 20.8 202 190-413 17-218 (270)
74 3oja_A Leucine-rich immune mol 99.9 3.6E-23 1.2E-27 198.2 11.9 229 190-432 35-270 (487)
75 2z62_A TOLL-like receptor 4, v 99.9 2.3E-21 7.7E-26 172.3 20.3 205 117-322 28-237 (276)
76 3rfs_A Internalin B, repeat mo 99.9 6.7E-22 2.3E-26 175.1 14.9 230 165-426 19-248 (272)
77 2o6q_A Variable lymphocyte rec 99.9 8.5E-21 2.9E-25 167.8 21.9 181 142-322 38-218 (270)
78 1p9a_G Platelet glycoprotein I 99.9 1.1E-20 3.8E-25 168.5 19.5 201 186-412 7-207 (290)
79 2ast_B S-phase kinase-associat 99.9 1.8E-22 6.1E-27 185.0 6.2 247 166-420 48-313 (336)
80 3goz_A Leucine-rich repeat-con 99.9 5.8E-22 2E-26 183.1 8.5 246 170-415 3-299 (362)
81 1p9a_G Platelet glycoprotein I 99.9 4.3E-20 1.5E-24 164.7 20.2 203 113-322 6-208 (290)
82 3rfs_A Internalin B, repeat mo 99.8 1.8E-20 6E-25 165.9 16.5 205 139-349 39-243 (272)
83 3goz_A Leucine-rich repeat-con 99.8 2.7E-22 9.2E-27 185.3 4.9 257 122-396 3-304 (362)
84 2ca6_A RAN GTPase-activating p 99.8 1.3E-22 4.3E-27 189.5 1.5 94 157-250 24-135 (386)
85 2xwt_C Thyrotropin receptor; s 99.8 6.6E-20 2.3E-24 159.1 15.5 197 32-247 32-236 (239)
86 2ast_B S-phase kinase-associat 99.8 4.1E-21 1.4E-25 175.9 8.2 248 189-444 47-313 (336)
87 3m19_A Variable lymphocyte rec 99.8 1.7E-19 5.7E-24 157.7 17.9 159 262-439 36-194 (251)
88 2xwt_C Thyrotropin receptor; s 99.8 1.3E-19 4.3E-24 157.3 14.9 195 118-318 32-235 (239)
89 1h6u_A Internalin H; cell adhe 99.8 1E-19 3.5E-24 163.9 14.2 192 209-414 37-231 (308)
90 1h6u_A Internalin H; cell adhe 99.8 3.2E-19 1.1E-23 160.6 17.2 195 27-251 37-231 (308)
91 4glp_A Monocyte differentiatio 99.8 2.8E-20 9.7E-25 168.0 10.4 205 212-438 90-308 (310)
92 3m19_A Variable lymphocyte rec 99.8 1E-18 3.6E-23 152.6 19.2 179 7-226 14-192 (251)
93 2ca6_A RAN GTPase-activating p 99.8 3.9E-21 1.3E-25 179.4 1.0 188 113-300 90-318 (386)
94 4glp_A Monocyte differentiatio 99.8 9.8E-19 3.3E-23 157.9 14.9 225 165-414 64-308 (310)
95 2o6s_A Variable lymphocyte rec 99.8 2.9E-18 1E-22 145.3 12.6 195 216-443 10-204 (208)
96 2o6s_A Variable lymphocyte rec 99.8 8.8E-18 3E-22 142.3 15.4 179 193-400 11-189 (208)
97 4ay9_X Follicle-stimulating ho 99.7 2.8E-17 9.4E-22 150.9 16.7 241 144-410 12-256 (350)
98 4ay9_X Follicle-stimulating ho 99.7 1E-16 3.5E-21 147.1 19.5 207 96-306 12-223 (350)
99 1h6t_A Internalin B; cell adhe 99.7 4.2E-17 1.4E-21 145.4 13.9 170 233-414 42-214 (291)
100 2v9t_B SLIT homolog 2 protein 99.7 7.2E-17 2.5E-21 137.6 14.3 134 285-437 32-165 (220)
101 4ezg_A Putative uncharacterize 99.7 2.9E-17 9.8E-22 137.8 11.5 153 259-438 42-195 (197)
102 4fs7_A Uncharacterized protein 99.7 6.3E-16 2.1E-20 144.3 21.3 238 135-405 156-393 (394)
103 1h6t_A Internalin B; cell adhe 99.7 4.5E-17 1.5E-21 145.2 12.9 172 27-226 42-213 (291)
104 2v70_A SLIT-2, SLIT homolog 2 99.7 1E-16 3.5E-21 136.7 14.4 154 264-439 14-168 (220)
105 3cvr_A Invasion plasmid antige 99.7 8.2E-17 2.8E-21 155.4 14.8 185 214-422 60-252 (571)
106 3e6j_A Variable lymphocyte rec 99.7 2.3E-16 7.8E-21 135.5 15.6 152 264-438 22-173 (229)
107 3sb4_A Hypothetical leucine ri 99.7 1.6E-17 5.6E-22 151.1 8.1 288 116-431 24-328 (329)
108 1m9s_A Internalin B; cell inva 99.7 3E-16 1E-20 153.2 15.9 177 233-421 39-218 (605)
109 2xot_A Amphoterin-induced prot 99.7 9.6E-17 3.3E-21 147.9 11.3 91 347-437 107-202 (361)
110 1m9s_A Internalin B; cell inva 99.7 2.4E-16 8.2E-21 153.9 14.5 187 191-391 23-212 (605)
111 2v9t_B SLIT homolog 2 protein 99.7 6.2E-16 2.1E-20 131.8 15.3 152 10-202 14-165 (220)
112 4fs7_A Uncharacterized protein 99.7 1.9E-15 6.5E-20 141.0 19.7 144 280-429 248-393 (394)
113 2v70_A SLIT-2, SLIT homolog 2 99.7 1.4E-15 4.8E-20 129.6 15.7 152 10-202 14-166 (220)
114 3sb4_A Hypothetical leucine ri 99.7 2.7E-16 9.1E-21 143.1 10.1 231 6-243 48-327 (329)
115 3e6j_A Variable lymphocyte rec 99.7 4E-15 1.4E-19 127.7 16.8 151 10-202 22-172 (229)
116 2xot_A Amphoterin-induced prot 99.7 9.9E-16 3.4E-20 141.1 13.7 176 96-274 21-202 (361)
117 4ezg_A Putative uncharacterize 99.7 2.2E-15 7.5E-20 126.2 14.6 131 113-249 62-193 (197)
118 3cvr_A Invasion plasmid antige 99.6 7E-15 2.4E-19 142.0 19.7 123 118-257 121-250 (571)
119 4fdw_A Leucine rich hypothetic 99.6 1.1E-14 3.9E-19 135.1 19.9 269 141-436 113-382 (401)
120 4fdw_A Leucine rich hypothetic 99.6 1.2E-14 4.2E-19 134.9 20.0 264 30-320 112-381 (401)
121 1xeu_A Internalin C; cellular 99.6 4.6E-16 1.6E-20 136.4 9.6 147 259-415 39-187 (263)
122 2ell_A Acidic leucine-rich nuc 99.6 1.9E-15 6.5E-20 123.2 11.4 138 284-443 23-165 (168)
123 1xeu_A Internalin C; cellular 99.6 1.6E-15 5.6E-20 132.9 9.5 167 30-225 18-184 (263)
124 1dce_A Protein (RAB geranylger 99.6 4.3E-17 1.5E-21 158.2 -2.8 190 234-441 346-550 (567)
125 1w8a_A SLIT protein; signaling 99.6 8.6E-15 2.9E-19 121.9 11.6 132 288-441 11-143 (192)
126 1dce_A Protein (RAB geranylger 99.6 7E-17 2.4E-21 156.8 -1.5 203 28-243 346-566 (567)
127 2je0_A Acidic leucine-rich nuc 99.6 8.3E-15 2.9E-19 116.8 9.9 129 284-433 16-149 (149)
128 2wfh_A SLIT homolog 2 protein 99.6 3.5E-14 1.2E-18 118.1 12.8 92 346-437 48-139 (193)
129 2o6r_A Variable lymphocyte rec 99.6 3.1E-14 1.1E-18 117.0 12.0 113 329-441 29-141 (177)
130 4gt6_A Cell surface protein; l 99.5 1.6E-12 5.3E-17 121.3 24.2 337 20-435 52-389 (394)
131 4gt6_A Cell surface protein; l 99.5 1.2E-12 4.1E-17 122.0 23.0 285 111-435 81-368 (394)
132 2ell_A Acidic leucine-rich nuc 99.5 7.3E-14 2.5E-18 113.7 11.9 132 31-178 24-160 (168)
133 4b8c_D Glucose-repressible alc 99.5 6.4E-15 2.2E-19 147.5 3.8 136 280-418 219-359 (727)
134 1w8a_A SLIT protein; signaling 99.5 4.3E-13 1.5E-17 111.6 12.6 129 10-179 11-140 (192)
135 2je0_A Acidic leucine-rich nuc 99.5 7.8E-14 2.7E-18 111.1 7.6 88 113-202 38-126 (149)
136 4b8c_D Glucose-repressible alc 99.5 4.2E-14 1.4E-18 141.6 7.3 180 229-437 216-404 (727)
137 1a9n_A U2A', U2A'; complex (nu 99.5 1.6E-13 5.6E-18 112.5 9.1 88 347-436 59-152 (176)
138 2wfh_A SLIT homolog 2 protein 99.4 2E-12 6.7E-17 107.5 13.1 125 121-249 14-138 (193)
139 2o6r_A Variable lymphocyte rec 99.4 7.3E-12 2.5E-16 102.7 14.1 109 142-250 29-137 (177)
140 1a9n_A U2A', U2A'; complex (nu 99.4 8.7E-13 3E-17 108.1 8.3 132 27-178 15-153 (176)
141 1ds9_A Outer arm dynein; leuci 99.4 1.2E-14 4.3E-19 121.7 -3.1 153 260-438 17-186 (198)
142 3g39_A Variable lymphocyte rec 99.3 6.2E-12 2.1E-16 102.2 10.9 106 331-439 12-117 (170)
143 2r9u_A Variable lymphocyte rec 99.3 1.2E-11 4.1E-16 100.8 10.9 103 332-437 16-118 (174)
144 4h09_A Hypothetical leucine ri 99.3 4.9E-10 1.7E-14 103.9 22.9 82 344-427 278-359 (379)
145 4h09_A Hypothetical leucine ri 99.3 4.9E-10 1.7E-14 103.8 22.6 316 28-402 43-358 (379)
146 1ds9_A Outer arm dynein; leuci 99.3 4.4E-14 1.5E-18 118.4 -5.7 136 283-442 16-158 (198)
147 3un9_A NLR family member X1; l 99.3 3.7E-13 1.3E-17 123.7 -0.4 178 260-437 71-283 (372)
148 3un9_A NLR family member X1; l 99.2 2.8E-13 9.5E-18 124.5 -2.2 178 236-413 71-283 (372)
149 3g39_A Variable lymphocyte rec 99.2 7.8E-11 2.7E-15 95.7 10.4 105 287-413 11-115 (170)
150 2r9u_A Variable lymphocyte rec 99.1 5.3E-10 1.8E-14 91.0 11.5 103 120-225 15-117 (174)
151 2ifg_A High affinity nerve gro 99.0 9E-10 3.1E-14 100.8 10.6 102 333-437 13-116 (347)
152 2ra8_A Uncharacterized protein 98.8 3.1E-09 1.1E-13 96.7 5.2 194 237-435 107-341 (362)
153 2ra8_A Uncharacterized protein 98.8 1.5E-08 5.1E-13 92.2 9.2 195 213-411 107-341 (362)
154 2ifg_A High affinity nerve gro 98.8 2.7E-08 9.2E-13 90.9 10.3 103 97-202 12-116 (347)
155 3e4g_A ATP synthase subunit S, 98.7 3.8E-09 1.3E-13 84.4 2.8 83 353-435 62-150 (176)
156 1io0_A Tropomodulin; LRR prote 98.5 2.1E-08 7.3E-13 82.3 1.4 119 304-437 31-164 (185)
157 3e4g_A ATP synthase subunit S, 98.5 5E-08 1.7E-12 77.9 2.2 99 329-427 62-170 (176)
158 1io0_A Tropomodulin; LRR prote 98.3 1.5E-07 5.1E-12 77.2 1.8 121 279-414 30-165 (185)
159 3rw6_A Nuclear RNA export fact 98.0 4.5E-06 1.5E-10 71.9 5.5 80 350-430 168-257 (267)
160 3rw6_A Nuclear RNA export fact 98.0 1.1E-06 3.7E-11 75.8 1.4 90 352-442 141-238 (267)
161 1pgv_A TMD-1, tropomodulin TMD 97.2 0.00012 4.3E-09 59.4 2.4 89 347-435 65-168 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.0 0.00063 2.2E-08 55.3 4.2 87 348-434 37-136 (197)
163 3rfe_A Platelet glycoprotein I 96.7 0.0023 7.9E-08 48.4 5.3 55 356-412 12-67 (130)
164 3rfe_A Platelet glycoprotein I 95.5 0.03 1E-06 42.2 6.3 38 352-389 31-68 (130)
165 2lz0_A Uncharacterized protein 86.5 1.5 5.1E-05 30.9 5.5 48 17-65 6-53 (100)
166 2lz0_A Uncharacterized protein 83.2 2 6.9E-05 30.3 4.9 39 2-41 15-53 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.7e-51 Score=417.31 Aligned_cols=436 Identities=36% Similarity=0.528 Sum_probs=312.0
Q ss_pred CCCCCcEEeccCCcCCCCCCcccCCCCCCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCCccEE
Q 039967 5 SFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVL 84 (445)
Q Consensus 5 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l 84 (445)
.+++|++|++++|.+....+. +..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..|.. .++.|+++
T Consensus 198 ~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L 274 (768)
T 3rgz_A 198 RCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYL 274 (768)
T ss_dssp TCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEE
T ss_pred cCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEE
Confidence 344444444444444443333 444455555555555444444444445555555555555444333332 44455555
Q ss_pred EecCcccc-----------cccceEEecCCcCCCCccccccCCCCCcEEEccCCcccCCCCcc-ccCCCCCceEEeccCc
Q 039967 85 ALCHNYFV-----------CNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLS-LGNLSNLDKLYLYSNS 152 (445)
Q Consensus 85 ~l~~~~~~-----------~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~ 152 (445)
++++|.+. ++|++|++++|.+.+..|..++.+++|++|++++|.+....|.. +..+++|++|++++|.
T Consensus 275 ~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~ 354 (768)
T 3rgz_A 275 SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE 354 (768)
T ss_dssp ECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSE
T ss_pred ECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCc
Confidence 55444332 44555555555555555555555555555555555554333332 5555566666666555
Q ss_pred cccccCccccCCC-CcCEEeCCCccccccccccccC--CCCCcEEEccCCccCCCCCccccCCCCcCEEEccCccccCCC
Q 039967 153 FSGSIPSIIGNLK-SLLQLDLSENQLIGSIPLSFGN--LSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVI 229 (445)
Q Consensus 153 ~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~l~~--l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 229 (445)
+....|..+..++ +|++|++++|.+.+..|..+.. +++|++|++.+|.+.+..|..+..+++|++|++++|.+....
T Consensus 355 l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 434 (768)
T 3rgz_A 355 FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTI 434 (768)
T ss_dssp EEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCC
T ss_pred cCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcc
Confidence 5544555555554 5666666666555444444444 667777777777777677777888888888888888887777
Q ss_pred CccccCCCcccEEEeeCccccccChhhhcccccccEEecccCccCCCccccccccCCccEEEcCCCcccCCCCccccccC
Q 039967 230 PSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLT 309 (445)
Q Consensus 230 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 309 (445)
+..+..+++|+.|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|++.+.+|.++..++
T Consensus 435 p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~ 514 (768)
T 3rgz_A 435 PSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE 514 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred cHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCC
Confidence 77888888888888888888877777888888899999988888877788888888999999999988888888888889
Q ss_pred ccceeeccCcccccc-----ccCCCcceEEcccCccccCCCc--------------------------------------
Q 039967 310 SVERVLLNQNNLSGK-----VNVPKLGTFIISVNNISESIPP-------------------------------------- 346 (445)
Q Consensus 310 ~L~~L~l~~~~~~~~-----~~~~~L~~L~l~~~~~~~~~~~-------------------------------------- 346 (445)
+|+.|++++|.+.+. ..+++|+.|++++|++.+..|.
T Consensus 515 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (768)
T 3rgz_A 515 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLL 594 (768)
T ss_dssp TCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEE
T ss_pred CCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccccc
Confidence 999999999887633 3478899999988887654443
Q ss_pred --------------------------------cccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccch
Q 039967 347 --------------------------------EIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPL 394 (445)
Q Consensus 347 --------------------------------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 394 (445)
.+..++.|++|++++|.+++..|..++.+++|+.|++++|.+.+.+|.
T Consensus 595 ~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~ 674 (768)
T 3rgz_A 595 EFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD 674 (768)
T ss_dssp ECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCG
T ss_pred ccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCCh
Confidence 233467899999999999999999999999999999999999999999
Q ss_pred hhcCCccCceeecCCCccccccCccccCCCCccEEeCCCCcccccCCCC
Q 039967 395 ELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQFGHKILVE 443 (445)
Q Consensus 395 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~ 443 (445)
.++++++|+.||+++|++++..|..+..++.|++|++++|+++|.+|+.
T Consensus 675 ~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 675 EVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp GGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS
T ss_pred HHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc
Confidence 9999999999999999999999999999999999999999999999964
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.3e-50 Score=410.65 Aligned_cols=438 Identities=34% Similarity=0.492 Sum_probs=355.0
Q ss_pred cCCCCCcEEeccCCcCCCCCCcccCCCCCCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCCccE
Q 039967 4 SSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINV 83 (445)
Q Consensus 4 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 83 (445)
..+++|++|++++|.+....+ +..+++|++|++++|.+.+..+. +.++++|++|++++|.+.+..|..+.++++|++
T Consensus 175 ~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~ 251 (768)
T 3rgz_A 175 DGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKL 251 (768)
T ss_dssp TCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCE
T ss_pred ccCCCCCEEECCCCcccccCC--cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCE
Confidence 445555555555554443322 25667777777777777655555 777778888888877777777777777888888
Q ss_pred EEecCcccc--------cccceEEecCCcCCCCccccccCC-CCCcEEEccCCcccCCCCccccCCCCCceEEeccCccc
Q 039967 84 LALCHNYFV--------CNLANFYLNNNSLFNSIPLVLGNL-NSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFS 154 (445)
Q Consensus 84 l~l~~~~~~--------~~L~~l~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 154 (445)
+++++|.+. ++|++|++++|.+.+.+|..+... ++|++|++++|.++...|..+..+++|++|++.+|.+.
T Consensus 252 L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 331 (768)
T 3rgz_A 252 LNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFS 331 (768)
T ss_dssp EECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEE
T ss_pred EECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCccc
Confidence 887777654 577888888887776777766654 88888888888887777778888888888888888776
Q ss_pred cccCcc-ccCCCCcCEEeCCCccccccccccccCCC-CCcEEEccCCccCCCCCccccC--CCCcCEEEccCccccCCCC
Q 039967 155 GSIPSI-IGNLKSLLQLDLSENQLIGSIPLSFGNLS-SLTLMSLFNNSLSGSLPPILGN--LKSLSALGLHINQLSGVIP 230 (445)
Q Consensus 155 ~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~--l~~L~~L~l~~~~~~~~~~ 230 (445)
...|.. +..+++|++|++++|.+.+..|..+..++ +|++|++++|.+.+..+..+.. +++|+++++++|.+....+
T Consensus 332 ~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p 411 (768)
T 3rgz_A 332 GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP 411 (768)
T ss_dssp EECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECC
T ss_pred CcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccC
Confidence 555554 77888888888888887767777777776 8888888888877655655555 6788999999988877777
Q ss_pred ccccCCCcccEEEeeCccccccChhhhcccccccEEecccCccCCCccccccccCCccEEEcCCCcccCCCCccccccCc
Q 039967 231 SSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTS 310 (445)
Q Consensus 231 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 310 (445)
..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|++|++++|.+.+..|..+..+++
T Consensus 412 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 491 (768)
T 3rgz_A 412 PTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTN 491 (768)
T ss_dssp GGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTT
T ss_pred HHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCC
Confidence 88888999999999999988778888889999999999999998888888889999999999999999888999999999
Q ss_pred cceeeccCcccccc-----ccCCCcceEEcccCccccCCCccccCCCCCcEEECCCCccccccchhh-------------
Q 039967 311 VERVLLNQNNLSGK-----VNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQL------------- 372 (445)
Q Consensus 311 L~~L~l~~~~~~~~-----~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~------------- 372 (445)
|+.|++++|.+.+. ..+++|+.|++++|++.+..|..+..+++|++|++++|.+.+..|..+
T Consensus 492 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~ 571 (768)
T 3rgz_A 492 LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIA 571 (768)
T ss_dssp CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTC
T ss_pred CCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccc
Confidence 99999999988743 348899999999999998889999999999999999998876555433
Q ss_pred ---------------------------------------------------------ccccCCCEEEccCCeeecccchh
Q 039967 373 ---------------------------------------------------------GKLFSLNKLILNLNQLSGGMPLE 395 (445)
Q Consensus 373 ---------------------------------------------------------~~~~~L~~L~l~~~~~~~~~~~~ 395 (445)
..+++|+.|++++|++.+.+|..
T Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~ 651 (768)
T 3rgz_A 572 GKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKE 651 (768)
T ss_dssp SCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGG
T ss_pred cccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHH
Confidence 23577899999999999999999
Q ss_pred hcCCccCceeecCCCccccccCccccCCCCccEEeCCCCcccccCCCCC
Q 039967 396 LGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQFGHKILVEL 444 (445)
Q Consensus 396 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~ 444 (445)
++.+++|+.|++++|++++..|..|.++++|++|++++|+++|.+|+.+
T Consensus 652 l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l 700 (768)
T 3rgz_A 652 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM 700 (768)
T ss_dssp GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGG
T ss_pred HhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHH
Confidence 9999999999999999999999999999999999999999999999765
No 3
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=6.7e-48 Score=382.61 Aligned_cols=429 Identities=24% Similarity=0.239 Sum_probs=225.2
Q ss_pred CCcEEeccCCcCCCCCCcccCCCCCCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCCccEEEec
Q 039967 8 HLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALC 87 (445)
Q Consensus 8 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~ 87 (445)
++++|++++|.+..+.+..+.++++|++|++++|.+....|.+|.++++|++|++++|.+.+..|..+.++++|++++++
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 113 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI 113 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECT
T ss_pred cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecc
Confidence 56777777777776666667777777777777777766666667777777777777777666666667777777777776
Q ss_pred Ccccc----------cccceEEecCCcCCCCccccccCCCCCcEEEccCCcccCCCCccccCCCCCc--eEEeccCcccc
Q 039967 88 HNYFV----------CNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLD--KLYLYSNSFSG 155 (445)
Q Consensus 88 ~~~~~----------~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~--~L~l~~~~~~~ 155 (445)
+|.+. ++|++|++++|.+.+.....+..+++|++|++++|.++...+..+..+++|+ .+++.+|.+..
T Consensus 114 ~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~ 193 (606)
T 3t6q_A 114 QTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG 193 (606)
T ss_dssp TSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCE
T ss_pred ccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCc
Confidence 66543 4567777777766653333344467777777777766655555566666666 55566655543
Q ss_pred ccCccccCC---------------------------------------------------CCcCEEeCCCcccccccccc
Q 039967 156 SIPSIIGNL---------------------------------------------------KSLLQLDLSENQLIGSIPLS 184 (445)
Q Consensus 156 ~~~~~~~~l---------------------------------------------------~~L~~L~l~~~~~~~~~~~~ 184 (445)
..+..+... .+|+.|++++|.+....+..
T Consensus 194 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~ 273 (606)
T 3t6q_A 194 IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNT 273 (606)
T ss_dssp ECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTT
T ss_pred cChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHH
Confidence 322222110 03444444444444444444
Q ss_pred ccCCCCCcEEEccCCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCccccc-cChhhhcccccc
Q 039967 185 FGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYS-FVPEEIRYLTSL 263 (445)
Q Consensus 185 l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L 263 (445)
+..+++|++|++++|.+. ..|..+..+++|++|++++|.+....+..+..+++|++|++++|.+.. .....+..+++|
T Consensus 274 ~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 352 (606)
T 3t6q_A 274 FHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENL 352 (606)
T ss_dssp TTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTC
T ss_pred hccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcC
Confidence 555555555555555554 344444555555555555555443333444445555555555554432 122234444555
Q ss_pred cEEecccCccCCCc--cccccccCCccEEEcCCCcccCCCCccccccCccceeeccCcccccc------ccCCCcceEEc
Q 039967 264 SELELCTNHLSGVI--PHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGK------VNVPKLGTFII 335 (445)
Q Consensus 264 ~~L~l~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~------~~~~~L~~L~l 335 (445)
++|++++|.+.... +..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+... ..+++|+.|++
T Consensus 353 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 432 (606)
T 3t6q_A 353 RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNL 432 (606)
T ss_dssp CEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEEC
T ss_pred CEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEEC
Confidence 55555555444322 23344444555555555544444444444445555555554444321 12344455555
Q ss_pred ccCccccCCCccccCCCCCcEEECCCCccccc---cchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCcc
Q 039967 336 SVNNISESIPPEIGDSPKLQVLDLSSNNIVGE---IPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKL 412 (445)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 412 (445)
++|.+....+..+..+++|++|++++|.+.+. .+..+..+++|+.|++++|++.+..|..+.++++|+.|++++|++
T Consensus 433 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 512 (606)
T 3t6q_A 433 SHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRL 512 (606)
T ss_dssp TTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCcc
Confidence 55444444444444444455555544444321 112344444444444444444434444444444444444444444
Q ss_pred ccccCccccCCCCccEEeCCCCcccc
Q 039967 413 KSSIPKSIGNLLRLCYLDLSNNQFGH 438 (445)
Q Consensus 413 ~~~~~~~~~~~~~L~~l~l~~~~~~~ 438 (445)
++..+..+..++.| +|++++|++++
T Consensus 513 ~~~~~~~l~~l~~L-~L~L~~N~l~~ 537 (606)
T 3t6q_A 513 TSSSIEALSHLKGI-YLNLASNHISI 537 (606)
T ss_dssp CGGGGGGGTTCCSC-EEECCSSCCCC
T ss_pred CcCChhHhCccccc-EEECcCCcccc
Confidence 44444444444444 44444444443
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.8e-47 Score=379.60 Aligned_cols=438 Identities=20% Similarity=0.230 Sum_probs=385.9
Q ss_pred CccCCCCCcEEeccCCcCCCCCCcccCCCCCCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCCc
Q 039967 2 AFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLI 81 (445)
Q Consensus 2 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L 81 (445)
+|+.+++|++|++++|.+..+.+..|.++++|++|++++|.+.+..+..+.++++|++|++++|.+....+..+.++++|
T Consensus 52 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L 131 (606)
T 3t6q_A 52 TFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTL 131 (606)
T ss_dssp TSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTC
T ss_pred HhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcc
Confidence 57899999999999999999889999999999999999999998889999999999999999999987667889999999
Q ss_pred cEEEecCcccc----------cccceEEecCCcCCCCccccccCCCCCc--EEEccCCcccCCCCccccCC---------
Q 039967 82 NVLALCHNYFV----------CNLANFYLNNNSLFNSIPLVLGNLNSLS--TMDLSQNQFSGSIPLSLGNL--------- 140 (445)
Q Consensus 82 ~~l~l~~~~~~----------~~L~~l~l~~~~~~~~~~~~~~~~~~L~--~L~l~~~~~~~~~~~~~~~l--------- 140 (445)
+++++++|.+. ++|+++++++|.+....+..++.+++|+ .|++++|.+....+..+...
T Consensus 132 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~ 211 (606)
T 3t6q_A 132 ESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGG 211 (606)
T ss_dssp CEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTT
T ss_pred cEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCC
Confidence 99999988664 6799999999999888888899999999 89999999876555444321
Q ss_pred ------------------------------------------CCCceEEeccCccccccCccccCCCCcCEEeCCCcccc
Q 039967 141 ------------------------------------------SNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLI 178 (445)
Q Consensus 141 ------------------------------------------~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 178 (445)
.+|+.+++.++.+....+..|..+++|+.|++++|.+.
T Consensus 212 ~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 291 (606)
T 3t6q_A 212 TQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS 291 (606)
T ss_dssp CSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS
T ss_pred chhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC
Confidence 15777888888887666777999999999999999987
Q ss_pred ccccccccCCCCCcEEEccCCccCCCCCccccCCCCcCEEEccCccccCCC-CccccCCCcccEEEeeCccccccC--hh
Q 039967 179 GSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVI-PSSIGNLSSLRALYLYNNGLYSFV--PE 255 (445)
Q Consensus 179 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~--~~ 255 (445)
.+|..+..+++|++|++.+|.+....+..+..+++|+++++++|.+.... ...+..+++|++|++++|.+.... +.
T Consensus 292 -~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 370 (606)
T 3t6q_A 292 -ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNL 370 (606)
T ss_dssp -CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTT
T ss_pred -CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcch
Confidence 67888999999999999999998777778999999999999999876333 445889999999999999987754 56
Q ss_pred hhcccccccEEecccCccCCCccccccccCCccEEEcCCCcccCCCC-ccccccCccceeeccCcccccc-----ccCCC
Q 039967 256 EIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIP-KSFKNLTSVERVLLNQNNLSGK-----VNVPK 329 (445)
Q Consensus 256 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~-----~~~~~ 329 (445)
.+..+++|++|++++|.+....+..+..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+... ..+++
T Consensus 371 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 450 (606)
T 3t6q_A 371 QLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPA 450 (606)
T ss_dssp TTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTT
T ss_pred hcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCC
Confidence 78889999999999999887777888999999999999999986654 4588999999999999988654 33889
Q ss_pred cceEEcccCccccC---CCccccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCCccCceee
Q 039967 330 LGTFIISVNNISES---IPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLD 406 (445)
Q Consensus 330 L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 406 (445)
|+.|++++|++.+. .+..+..+++|++|++++|.+++..|..+..+++|+.|++++|++.+..+..+..+++| .|+
T Consensus 451 L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~ 529 (606)
T 3t6q_A 451 LQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLN 529 (606)
T ss_dssp CCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEE
T ss_pred CCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEE
Confidence 99999999998752 33568889999999999999998888999999999999999999998889999999999 999
Q ss_pred cCCCccccccCccccCCCCccEEeCCCCcccccCC
Q 039967 407 LSTNKLKSSIPKSIGNLLRLCYLDLSNNQFGHKIL 441 (445)
Q Consensus 407 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~ 441 (445)
+++|++++..+..+..+++|+++++++|+|....+
T Consensus 530 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 530 LASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp CCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred CcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 99999998888889999999999999999986543
No 5
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=6.5e-45 Score=365.88 Aligned_cols=434 Identities=24% Similarity=0.226 Sum_probs=203.9
Q ss_pred CCCCcEEeccCCcCCCCCCcccCCCCCCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCCccEEE
Q 039967 6 FPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLA 85 (445)
Q Consensus 6 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~ 85 (445)
+++|++|++++|.+..+++..+.++++|++|++++|.+.+..+..+.++++|++|++++|.+.+..+..+.++++|++++
T Consensus 72 l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 151 (680)
T 1ziw_A 72 LPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELL 151 (680)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEE
T ss_pred ccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEE
Confidence 34444444444444443333344444444444444444433334444444444444444444443344444444444444
Q ss_pred ecCcccc------------cccceEEecCCcCCCCccccccCC---------------------------CCCcEEEccC
Q 039967 86 LCHNYFV------------CNLANFYLNNNSLFNSIPLVLGNL---------------------------NSLSTMDLSQ 126 (445)
Q Consensus 86 l~~~~~~------------~~L~~l~l~~~~~~~~~~~~~~~~---------------------------~~L~~L~l~~ 126 (445)
+++|.+. .+|+++++++|.+.+..+..+..+ ++|+.|++++
T Consensus 152 L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~ 231 (680)
T 1ziw_A 152 LSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSN 231 (680)
T ss_dssp CCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTT
T ss_pred ccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccC
Confidence 4443221 234444444444443333322222 2223333333
Q ss_pred CcccCCCCccccCCC--CCceEEeccCccccccCccccCCCCcCEEeCCCccccccccccccCCCCCcEEEccCCccCC-
Q 039967 127 NQFSGSIPLSLGNLS--NLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSG- 203 (445)
Q Consensus 127 ~~~~~~~~~~~~~l~--~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~- 203 (445)
+.+....+..+..++ +|+.|++++|.+....+..|..+++|++|++++|.+....+..+..+++|+.|++.++....
T Consensus 232 n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~ 311 (680)
T 1ziw_A 232 SQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQS 311 (680)
T ss_dssp SCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC-
T ss_pred CcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcc
Confidence 333322333333332 25555555555544444455555555555555555544444444444444444444332110
Q ss_pred ----CCC----ccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeC----------------------------c
Q 039967 204 ----SLP----PILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYN----------------------------N 247 (445)
Q Consensus 204 ----~~~----~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~----------------------------~ 247 (445)
..| ..+..+++|+++++++|.+....+..+..+++|++|++++ |
T Consensus 312 ~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n 391 (680)
T 1ziw_A 312 ISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKN 391 (680)
T ss_dssp -----CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTS
T ss_pred cccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCC
Confidence 011 1233444445555544444433333444444444444443 3
Q ss_pred cccccChhhhcccccccEEecccCccCCCc-cccccccCCccEEEcCCCcccCCCCccccccCccceeeccCccccc---
Q 039967 248 GLYSFVPEEIRYLTSLSELELCTNHLSGVI-PHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSG--- 323 (445)
Q Consensus 248 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--- 323 (445)
.+....+..+..+++|+.|++++|.+.... ...+..+++|+++++++|.+.+..+..|..++.|+.|++++|.+..
T Consensus 392 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 471 (680)
T 1ziw_A 392 KISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDS 471 (680)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTC
T ss_pred CCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhcccccccccc
Confidence 333333344444555555555555443222 2344445555555555555444444444455555555555544321
Q ss_pred ----cccCCCcceEEcccCccccCCCccccCCCCCcEEECCCCccccccc--------hhhccccCCCEEEccCCeeecc
Q 039967 324 ----KVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIP--------VQLGKLFSLNKLILNLNQLSGG 391 (445)
Q Consensus 324 ----~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------~~~~~~~~L~~L~l~~~~~~~~ 391 (445)
...+++|+.|++++|++....+..+..+++|++|++++|.+++..+ ..+..+++|+.|++++|++...
T Consensus 472 ~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i 551 (680)
T 1ziw_A 472 SPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEI 551 (680)
T ss_dssp SSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCC
T ss_pred CCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCC
Confidence 1224566666666666665555555666666666666666553211 1245556666666666666533
Q ss_pred cchhhcCCccCceeecCCCccccccCccccCCCCccEEeCCCCccccc
Q 039967 392 MPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQFGHK 439 (445)
Q Consensus 392 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~ 439 (445)
.+..|.++++|+.|++++|+++...+..|..+++|++|++++|++++.
T Consensus 552 ~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~ 599 (680)
T 1ziw_A 552 PVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSV 599 (680)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBC
T ss_pred CHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCcc
Confidence 333456666666666666666655555556666666666666665543
No 6
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=9.5e-45 Score=364.70 Aligned_cols=439 Identities=23% Similarity=0.244 Sum_probs=273.9
Q ss_pred ccCCCCCcEEeccCCcCCCCCCcccCCCCCCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCCcc
Q 039967 3 FSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLIN 82 (445)
Q Consensus 3 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 82 (445)
|+++++|++|++++|.+..+.+..+.++++|++|++++|.+....+..|.++++|++|++++|.+.+..+..+.++++|+
T Consensus 45 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 124 (680)
T 1ziw_A 45 FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLI 124 (680)
T ss_dssp GGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCC
T ss_pred HhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCC
Confidence 44455555555555555555444555555555555555555533333455555555555555555444444455555555
Q ss_pred EEEecCcccc----------cccceEEecCCcCCCCcccccc--CCCCCcEEEccCCcccCCCCccccCC----------
Q 039967 83 VLALCHNYFV----------CNLANFYLNNNSLFNSIPLVLG--NLNSLSTMDLSQNQFSGSIPLSLGNL---------- 140 (445)
Q Consensus 83 ~l~l~~~~~~----------~~L~~l~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l---------- 140 (445)
++++++|.+. ++|++|++++|.+....+..+. .+++|++|++++|.++...+..+..+
T Consensus 125 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 204 (680)
T 1ziw_A 125 TLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNN 204 (680)
T ss_dssp EEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTT
T ss_pred EEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccc
Confidence 5555554332 3455555555555444333322 33555555555555554444333322
Q ss_pred -----------------CCCceEEeccCccccccCccccCCCC--cCEEeCCCccccccccccccCCCCCcEEEccCCcc
Q 039967 141 -----------------SNLDKLYLYSNSFSGSIPSIIGNLKS--LLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSL 201 (445)
Q Consensus 141 -----------------~~L~~L~l~~~~~~~~~~~~~~~l~~--L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 201 (445)
++|+.|.++++.+....+..+..++. |+.|++++|.+....+..+..+++|++|++.+|.+
T Consensus 205 ~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 284 (680)
T 1ziw_A 205 VQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNI 284 (680)
T ss_dssp CCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCB
T ss_pred cccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCcc
Confidence 34455555555555444555655544 88888888877766666777888888888888887
Q ss_pred CCCCCccccCCCCcCEEEccCccccC---------CCCccccCCCcccEEEeeCccccccChhhhcccccccEEecccCc
Q 039967 202 SGSLPPILGNLKSLSALGLHINQLSG---------VIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNH 272 (445)
Q Consensus 202 ~~~~~~~~~~l~~L~~L~l~~~~~~~---------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 272 (445)
....+..+..+++|+.++++++.... .....+..+++|++|++++|.+....+..+..+++|++|++++|.
T Consensus 285 ~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 364 (680)
T 1ziw_A 285 QHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSF 364 (680)
T ss_dssp SEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCB
T ss_pred CccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCc
Confidence 76667777788888888887654321 112366778899999999998888777777788888888877664
Q ss_pred cC----------------------------CCccccccccCCccEEEcCCCcccCCCC-ccccccCccceeeccCccccc
Q 039967 273 LS----------------------------GVIPHSIGNLTGLLLLNMCENHLSGPIP-KSFKNLTSVERVLLNQNNLSG 323 (445)
Q Consensus 273 ~~----------------------------~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~ 323 (445)
+. ...+..+..+++|+.|++++|.+.+.++ ..+..+++|++|++++|.+..
T Consensus 365 ~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 444 (680)
T 1ziw_A 365 TSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQ 444 (680)
T ss_dssp SCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEE
T ss_pred hhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcce
Confidence 32 1222333444555555555555543332 345555555555555555432
Q ss_pred c-----ccCCCcceEEcccCccc--cCCCccccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccc---
Q 039967 324 K-----VNVPKLGTFIISVNNIS--ESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMP--- 393 (445)
Q Consensus 324 ~-----~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--- 393 (445)
. ..+++|+.|++.++.+. +..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+
T Consensus 445 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 524 (680)
T 1ziw_A 445 LTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHAN 524 (680)
T ss_dssp CCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTS
T ss_pred eChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhc
Confidence 2 22556666666666554 3456677788888888888888887777778888889999999888864322
Q ss_pred -----hhhcCCccCceeecCCCccccccCccccCCCCccEEeCCCCcccccCCC
Q 039967 394 -----LELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQFGHKILV 442 (445)
Q Consensus 394 -----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~ 442 (445)
..+.++++|+.|++++|++....+..|..+++|++|++++|+++ .+|.
T Consensus 525 ~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~-~l~~ 577 (680)
T 1ziw_A 525 PGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLN-TLPA 577 (680)
T ss_dssp TTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCT
T ss_pred cCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCC-cCCH
Confidence 22677889999999999888666667889999999999999888 4443
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.8e-45 Score=365.21 Aligned_cols=426 Identities=20% Similarity=0.194 Sum_probs=313.9
Q ss_pred CCCcEEeccCCcCCCCCCcccCCCCCCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCCccEEEe
Q 039967 7 PHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLAL 86 (445)
Q Consensus 7 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l 86 (445)
+++++|++++|.+..+.+..+.++++|++|++++|.+.+..+.+|.++++|++|++++|.+....|..+.++++|+++++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 57899999999888888888889999999999999888777888888999999999999888777888999999999999
Q ss_pred cCcccc----------cccceEEecCCcCCC-CccccccCCCCCcEEEccCCcccCCCCccccCCCCCc----eEEeccC
Q 039967 87 CHNYFV----------CNLANFYLNNNSLFN-SIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLD----KLYLYSN 151 (445)
Q Consensus 87 ~~~~~~----------~~L~~l~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~----~L~l~~~ 151 (445)
++|.+. .+|++|++++|.+.+ .+|..++++++|++|++++|.++...+..+..+.+|+ ++++++|
T Consensus 112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n 191 (606)
T 3vq2_A 112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN 191 (606)
T ss_dssp TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTC
T ss_pred cCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCC
Confidence 887653 678899999988876 5688899999999999999888766666555554443 5666666
Q ss_pred ccccccCcccc---------------------------------------------------------------------
Q 039967 152 SFSGSIPSIIG--------------------------------------------------------------------- 162 (445)
Q Consensus 152 ~~~~~~~~~~~--------------------------------------------------------------------- 162 (445)
.+....+..+.
T Consensus 192 ~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~ 271 (606)
T 3vq2_A 192 PIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYT 271 (606)
T ss_dssp CCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCC
T ss_pred CcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecccc
Confidence 55433222222
Q ss_pred -----------CCCCcCEEeCCCccccccccccccCCCCCcEEEccCCccCCCCCccccCCCCcCEEEccCccccCCCCc
Q 039967 163 -----------NLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPS 231 (445)
Q Consensus 163 -----------~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 231 (445)
.+++|+.|+++++.+. ..| .+..+++|+.|++.+|.+. ..|. + .+++|+++++++|......
T Consensus 272 ~~~~~~~~~~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l~-~lp~-~-~l~~L~~L~l~~n~~~~~~-- 344 (606)
T 3vq2_A 272 NDFSDDIVKFHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQLK-QFPT-L-DLPFLKSLTLTMNKGSISF-- 344 (606)
T ss_dssp TTCCGGGGSCGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCCS-SCCC-C-CCSSCCEEEEESCSSCEEC--
T ss_pred ccccccccccccCCCCCEEEecCccch-hhh-hccccccCCEEEcccccCc-cccc-C-CCCccceeeccCCcCccch--
Confidence 2334444444444432 222 3455556666666666663 4442 3 5666666666666432221
Q ss_pred cccCCCcccEEEeeCcccccc--ChhhhcccccccEEecccCccCCCccccccccCCccEEEcCCCcccCCCC-cccccc
Q 039967 232 SIGNLSSLRALYLYNNGLYSF--VPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIP-KSFKNL 308 (445)
Q Consensus 232 ~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~ 308 (445)
.+..+++|++|++++|.+... .+..+..+++|++|++++|.+.. .+..+..+++|+.|++++|.+.+..+ ..+..+
T Consensus 345 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l 423 (606)
T 3vq2_A 345 KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSL 423 (606)
T ss_dssp CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTC
T ss_pred hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhcc
Confidence 455677777888877776654 25566777888888888887763 34667778888888888888876655 577788
Q ss_pred CccceeeccCcccccc-----ccCCCcceEEcccCccccC-CCccccCCCCCcEEECCCCccccccchhhccccCCCEEE
Q 039967 309 TSVERVLLNQNNLSGK-----VNVPKLGTFIISVNNISES-IPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLI 382 (445)
Q Consensus 309 ~~L~~L~l~~~~~~~~-----~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 382 (445)
++|+.|++++|.+.+. ..+++|+.|++.+|++.+. .+..+..+++|++|++++|.+++..|..+..+++|++|+
T Consensus 424 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 503 (606)
T 3vq2_A 424 EKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLN 503 (606)
T ss_dssp TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred ccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEE
Confidence 8888888888877643 2377888888888888763 677788888888888888888877778888888888888
Q ss_pred ccCCeeecccchhhcCCccCceeecCCCccccccCccccCCC-CccEEeCCCCcccccCC
Q 039967 383 LNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLL-RLCYLDLSNNQFGHKIL 441 (445)
Q Consensus 383 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~l~l~~~~~~~~~~ 441 (445)
+++|++.+..|..+..+++|+.|++++|+++ ..|..+..++ +|+++++++|+|....+
T Consensus 504 Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 504 MSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp CCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred CCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 8888888777888888888888888888887 4555577776 58888888888885443
No 8
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.9e-45 Score=360.42 Aligned_cols=427 Identities=23% Similarity=0.215 Sum_probs=360.2
Q ss_pred CCCcEEeccCCcCCCCCCcccCCCCCCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCCccEEEe
Q 039967 7 PHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLAL 86 (445)
Q Consensus 7 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l 86 (445)
+++++|++++|.+..+.+..+.++++|++|++++|.+.+..+.+|.++++|++|++++|.+....+..+.++++|+++++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 47999999999999888888999999999999999998888888999999999999999998777788999999999999
Q ss_pred cCcccc----------cccceEEecCCcCCC-CccccccCCCCCcEEEccCCcccCCCCccccCCCCC----ceEEeccC
Q 039967 87 CHNYFV----------CNLANFYLNNNSLFN-SIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNL----DKLYLYSN 151 (445)
Q Consensus 87 ~~~~~~----------~~L~~l~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L----~~L~l~~~ 151 (445)
+++.+. .+|++|++++|.+.. .+|..++++++|++|++++|.++...+..+..+++| +.+++.+|
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n 187 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCC
Confidence 887553 579999999998876 468889999999999999999887667777777777 78889988
Q ss_pred ccccccCccccCCCCcCEEeCCCc--------------------------------------------------------
Q 039967 152 SFSGSIPSIIGNLKSLLQLDLSEN-------------------------------------------------------- 175 (445)
Q Consensus 152 ~~~~~~~~~~~~l~~L~~L~l~~~-------------------------------------------------------- 175 (445)
.+....+..+... +|+.|+++++
T Consensus 188 ~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~ 266 (570)
T 2z63_A 188 PMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 266 (570)
T ss_dssp CCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEE
T ss_pred CceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhc
Confidence 8876666666554 6777777665
Q ss_pred --cccccccccccCCCCCcEEEccCCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCccccccC
Q 039967 176 --QLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFV 253 (445)
Q Consensus 176 --~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 253 (445)
.+....+..+..+++|+.|++.++.+. ..|..+..+ +|+++++++|.+. ..+. ..+++|+.+++.+|......
T Consensus 267 ~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~ 341 (570)
T 2z63_A 267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAF 341 (570)
T ss_dssp TTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBC
T ss_pred chhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccc
Confidence 222234455667788999999998887 567777777 8999999998877 3322 46788999999998876644
Q ss_pred hhhhcccccccEEecccCccCCCc--cccccccCCccEEEcCCCcccCCCCccccccCccceeeccCcccccc------c
Q 039967 254 PEEIRYLTSLSELELCTNHLSGVI--PHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGK------V 325 (445)
Q Consensus 254 ~~~~~~~~~L~~L~l~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~------~ 325 (445)
+. ..+++|++|++++|.+.... +..+..+++|++|++++|.+.+..+ .+..+++|+.|++++|.+.+. .
T Consensus 342 ~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 418 (570)
T 2z63_A 342 SE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFL 418 (570)
T ss_dssp CC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEE-EEETCTTCCEEECTTSEEESCTTSCTTT
T ss_pred cc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccc-cccccCCCCEEEccCCccccccchhhhh
Confidence 33 67889999999999887443 4567888999999999999885444 488999999999999987643 3
Q ss_pred cCCCcceEEcccCccccCCCccccCCCCCcEEECCCCccc-cccchhhccccCCCEEEccCCeeecccchhhcCCccCce
Q 039967 326 NVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIV-GEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQY 404 (445)
Q Consensus 326 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 404 (445)
.+++|+.|++++|.+....+..+..+++|++|++++|.+. +..|..+..+++|+.|++++|++.+..|..+..+++|+.
T Consensus 419 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 498 (570)
T 2z63_A 419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 498 (570)
T ss_dssp TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred cCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCE
Confidence 4789999999999999888889999999999999999987 468888999999999999999999777889999999999
Q ss_pred eecCCCccccccCccccCCCCccEEeCCCCcccccCCC
Q 039967 405 LDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQFGHKILV 442 (445)
Q Consensus 405 L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~ 442 (445)
|++++|++++..+..|..+++|++|++++|++++..|.
T Consensus 499 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 499 LNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred EeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 99999999988888899999999999999999988773
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.4e-44 Score=358.75 Aligned_cols=403 Identities=25% Similarity=0.224 Sum_probs=309.4
Q ss_pred CccCCCCCcEEeccCCcCCCCCCcccCCCCCCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCCc
Q 039967 2 AFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLI 81 (445)
Q Consensus 2 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L 81 (445)
+|+++++|++|++++|.+..+.+..|.++++|++|++++|.+.+..|..++++++|++|++++|.+....+..+.++++|
T Consensus 51 ~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 130 (606)
T 3vq2_A 51 SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITL 130 (606)
T ss_dssp TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTC
T ss_pred hccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCC
Confidence 45666666666666666666666666666666666666666665556666666666666666666655444556666666
Q ss_pred cEEEecCcccc-----------cccceEEecCCcCCCCccccccCC---------------------------CCCcEEE
Q 039967 82 NVLALCHNYFV-----------CNLANFYLNNNSLFNSIPLVLGNL---------------------------NSLSTMD 123 (445)
Q Consensus 82 ~~l~l~~~~~~-----------~~L~~l~l~~~~~~~~~~~~~~~~---------------------------~~L~~L~ 123 (445)
+++++++|.+. ++|++|++++|.+.+..+..++.+ .+|+.|+
T Consensus 131 ~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~ 210 (606)
T 3vq2_A 131 KKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELT 210 (606)
T ss_dssp CEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEE
T ss_pred CEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeee
Confidence 66666555432 345555555555544333322222 2566666
Q ss_pred ccCCccc----------------------------------------------------------CCCCccccCCCCCce
Q 039967 124 LSQNQFS----------------------------------------------------------GSIPLSLGNLSNLDK 145 (445)
Q Consensus 124 l~~~~~~----------------------------------------------------------~~~~~~~~~l~~L~~ 145 (445)
+++|.+. ...+. +..+++|+.
T Consensus 211 L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~ 289 (606)
T 3vq2_A 211 LRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSA 289 (606)
T ss_dssp EESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSE
T ss_pred ccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCE
Confidence 6665432 01111 455678888
Q ss_pred EEeccCccccccCccccCCCCcCEEeCCCccccccccccccCCCCCcEEEccCCccCCCCCccccCCCCcCEEEccCccc
Q 039967 146 LYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQL 225 (445)
Q Consensus 146 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 225 (445)
+.+.++.+. ..+ .+..+++|+.|++++|.+ ..+| .+ .+++|++|++.+|...... .+..+++|+.+++++|.+
T Consensus 290 L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l 362 (606)
T 3vq2_A 290 MSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNAL 362 (606)
T ss_dssp EEEESCCCC-CCC-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCE
T ss_pred EEecCccch-hhh-hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCcc
Confidence 888888876 455 788899999999999998 4677 45 9999999999999654332 566889999999999988
Q ss_pred cCC--CCccccCCCcccEEEeeCccccccChhhhcccccccEEecccCccCCCcc-ccccccCCccEEEcCCCcccCCCC
Q 039967 226 SGV--IPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIP-HSIGNLTGLLLLNMCENHLSGPIP 302 (445)
Q Consensus 226 ~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~ 302 (445)
... .+..+..+++|++|++++|.+... +..+..+++|+.|++++|.+....+ ..+..+++|++|++++|.+.+..+
T Consensus 363 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 441 (606)
T 3vq2_A 363 SFSGCCSYSDLGTNSLRHLDLSFNGAIIM-SANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFD 441 (606)
T ss_dssp EEEEECCHHHHCCSCCCEEECCSCSEEEE-CCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCT
T ss_pred CCCcchhhhhccCCcccEeECCCCccccc-hhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccch
Confidence 744 256788899999999999998774 4678889999999999999886665 578899999999999999998888
Q ss_pred ccccccCccceeeccCcccccc------ccCCCcceEEcccCccccCCCccccCCCCCcEEECCCCccccccchhhcccc
Q 039967 303 KSFKNLTSVERVLLNQNNLSGK------VNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLF 376 (445)
Q Consensus 303 ~~~~~~~~L~~L~l~~~~~~~~------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 376 (445)
..+..+++|+.|++++|.+.+. ..+++|+.|++++|++.+..+..+..+++|++|++++|.+++..|..+..++
T Consensus 442 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 521 (606)
T 3vq2_A 442 GIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLY 521 (606)
T ss_dssp TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCT
T ss_pred hhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCC
Confidence 8999999999999999988752 3378999999999999988888999999999999999999988899999999
Q ss_pred CCCEEEccCCeeecccchhhcCCc-cCceeecCCCcccc
Q 039967 377 SLNKLILNLNQLSGGMPLELGSLI-ELQYLDLSTNKLKS 414 (445)
Q Consensus 377 ~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~ 414 (445)
+|++|++++|++. .+|..+..++ +|+.|++++|++..
T Consensus 522 ~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 522 SLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVAC 559 (606)
T ss_dssp TCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCC
T ss_pred cCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCccc
Confidence 9999999999998 6777788887 69999999999873
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=9.4e-44 Score=364.13 Aligned_cols=431 Identities=25% Similarity=0.242 Sum_probs=275.1
Q ss_pred CCCCcEEeccCCcCCCCCCcccCCCCCCcEEeccCcccC-CCCCccccCCCCCcEEEecCcccccCCCcccccCCCccEE
Q 039967 6 FPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLS-GVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVL 84 (445)
Q Consensus 6 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l 84 (445)
.+++++|+|++|.+..+.+..+.++++|++|++++|... ...+.+|.++++|++|++++|.+.+..|..+.++++|+++
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 102 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence 368899999999998888888999999999999998543 3447888999999999999999988788899999999999
Q ss_pred EecCcccc------------cccceEEecCCcCCCCcc-ccccCCCCCcEEEccCCcccCCCCccccCC--CCCceEEec
Q 039967 85 ALCHNYFV------------CNLANFYLNNNSLFNSIP-LVLGNLNSLSTMDLSQNQFSGSIPLSLGNL--SNLDKLYLY 149 (445)
Q Consensus 85 ~l~~~~~~------------~~L~~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l--~~L~~L~l~ 149 (445)
++++|.+. ++|++|++++|.+.+..+ ..++++++|++|++++|.++...+..+..+ ++|+.|.+.
T Consensus 103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~ 182 (844)
T 3j0a_A 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA 182 (844)
T ss_dssp ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEEC
T ss_pred eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECC
Confidence 99887653 578889999888876544 568889999999999988887777777766 788888888
Q ss_pred cCccccccCccccCCCC------cCEEeCCCccccccccccccC------------------------------------
Q 039967 150 SNSFSGSIPSIIGNLKS------LLQLDLSENQLIGSIPLSFGN------------------------------------ 187 (445)
Q Consensus 150 ~~~~~~~~~~~~~~l~~------L~~L~l~~~~~~~~~~~~l~~------------------------------------ 187 (445)
+|.+....+..+..+++ |+.|++++|.+....+..+..
T Consensus 183 ~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~ 262 (844)
T 3j0a_A 183 ANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAG 262 (844)
T ss_dssp CSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTT
T ss_pred CCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhc
Confidence 88777555555555554 888888887654333322211
Q ss_pred --CCCCcEEEccCCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCccccccChhhhcccccccE
Q 039967 188 --LSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSE 265 (445)
Q Consensus 188 --l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 265 (445)
.++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.
T Consensus 263 l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 342 (844)
T 3j0a_A 263 LARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAY 342 (844)
T ss_dssp TTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCE
T ss_pred cccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCE
Confidence 245666666666666555556666666666666666666555556666666666666666666555556666666666
Q ss_pred EecccCccCCCccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCcc--------------------cccc-
Q 039967 266 LELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNN--------------------LSGK- 324 (445)
Q Consensus 266 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~--------------------~~~~- 324 (445)
|++++|.+....+..+..+++|++|++++|.+.+. + .+++|+.+.+++|. +.+.
T Consensus 343 L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-~----~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~ 417 (844)
T 3j0a_A 343 IDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-H----FIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLD 417 (844)
T ss_dssp EECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-S----SCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSST
T ss_pred EECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-c----CCCCcchhccCCCCcccccccccccceeecccCccccCc
Confidence 66666666555555566666666666666655421 1 12333333333332 2211
Q ss_pred -----ccCCCcceEEcccCccccCCCc-cccCCCCCcEEECCCCccc-----cccchhhccccCCCEEEccCCeeecccc
Q 039967 325 -----VNVPKLGTFIISVNNISESIPP-EIGDSPKLQVLDLSSNNIV-----GEIPVQLGKLFSLNKLILNLNQLSGGMP 393 (445)
Q Consensus 325 -----~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 393 (445)
..+++|+.|++++|++....+. .+..+++|+.|++++|.+. +..+..|..+++|+.|++++|++.+..+
T Consensus 418 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 497 (844)
T 3j0a_A 418 ILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPP 497 (844)
T ss_dssp THHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCT
T ss_pred hhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccCh
Confidence 1244555555555554432211 2233445555555555443 1122334455555555555555554444
Q ss_pred hhhcCCccCceeecCCCccccccCccccCCCCccEEeCCCCcccccCCCC
Q 039967 394 LELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQFGHKILVE 443 (445)
Q Consensus 394 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~ 443 (445)
..+.++++|+.|++++|+++...+..+. ++|++|++++|++++..|+.
T Consensus 498 ~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~ 545 (844)
T 3j0a_A 498 GVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV 545 (844)
T ss_dssp TSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC
T ss_pred hHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH
Confidence 4455555555555555555544444443 55555555555555555543
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.3e-41 Score=333.46 Aligned_cols=425 Identities=21% Similarity=0.205 Sum_probs=347.9
Q ss_pred CcEEeccCCcCCCCCCcccCCCCCCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCCccEEEecC
Q 039967 9 LVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCH 88 (445)
Q Consensus 9 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~ 88 (445)
.++++-++..+..++. .+ .++++.|++++|.+.+..+.+|.++++|++|++++|.+.+..+..+.++++|+++++++
T Consensus 9 ~~~~~c~~~~l~~ip~-~l--~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 85 (570)
T 2z63_A 9 NITYQCMELNFYKIPD-NL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85 (570)
T ss_dssp TTEEECCSSCCSSCCS-SS--CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CcEEEeCCCCccccCC-Cc--cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcC
Confidence 4566666666666643 33 35799999999999988888999999999999999999877788899999999999998
Q ss_pred cccc----------cccceEEecCCcCCCCccccccCCCCCcEEEccCCcccC-CCCccccCCCCCceEEeccCcccccc
Q 039967 89 NYFV----------CNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSG-SIPLSLGNLSNLDKLYLYSNSFSGSI 157 (445)
Q Consensus 89 ~~~~----------~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~ 157 (445)
+.+. ++|++|++++|.+....+..++++++|++|++++|.++. ..|..+..+++|++|++++|.+....
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~ 165 (570)
T 2z63_A 86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165 (570)
T ss_dssp CCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEEC
T ss_pred CcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceec
Confidence 8653 678999999998877666568899999999999998875 35788888999999999999887666
Q ss_pred CccccCCCCc----CEEeCCCccccccccccccCCCCCcEEEccCC----------------------------------
Q 039967 158 PSIIGNLKSL----LQLDLSENQLIGSIPLSFGNLSSLTLMSLFNN---------------------------------- 199 (445)
Q Consensus 158 ~~~~~~l~~L----~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~---------------------------------- 199 (445)
+..+..+++| +.+++++|.+....+..+... +|+.|++.++
T Consensus 166 ~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~ 244 (570)
T 2z63_A 166 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE 244 (570)
T ss_dssp GGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCE
T ss_pred HHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhh
Confidence 6777777777 889999988876666555443 6777766654
Q ss_pred ------------------------ccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCccccccChh
Q 039967 200 ------------------------SLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPE 255 (445)
Q Consensus 200 ------------------------~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 255 (445)
.+....+..+..+++|++++++++.+. ..+..+..+ +|+.|++++|.+.....
T Consensus 245 ~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~~l~~- 321 (570)
T 2z63_A 245 KFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFGQFPT- 321 (570)
T ss_dssp ECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCSSCCB-
T ss_pred hcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCcccccCc-
Confidence 222334455667788999999888877 455566667 89999999988875432
Q ss_pred hhcccccccEEecccCccCCCccccccccCCccEEEcCCCcccCCC--CccccccCccceeeccCcccccc----ccCCC
Q 039967 256 EIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPI--PKSFKNLTSVERVLLNQNNLSGK----VNVPK 329 (445)
Q Consensus 256 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~----~~~~~ 329 (445)
..+++|+.|++.+|......+. ..+++|++|++++|.+.+.. +..+..+++|+.|++++|.+.+. ..+++
T Consensus 322 --~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~ 397 (570)
T 2z63_A 322 --LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQ 397 (570)
T ss_dssp --CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTT
T ss_pred --ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCC
Confidence 3678899999998877644332 67899999999999887543 56788999999999999987643 34889
Q ss_pred cceEEcccCccccCCC-ccccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeee-cccchhhcCCccCceeec
Q 039967 330 LGTFIISVNNISESIP-PEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLS-GGMPLELGSLIELQYLDL 407 (445)
Q Consensus 330 L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l 407 (445)
|+.|++.+|.+....+ ..+..+++|++|++++|.+.+..+..+.++++|+.|++++|.+. +.+|..+..+++|+.|++
T Consensus 398 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l 477 (570)
T 2z63_A 398 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 477 (570)
T ss_dssp CCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEEC
T ss_pred CCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEEC
Confidence 9999999999986655 56889999999999999999888889999999999999999997 467888999999999999
Q ss_pred CCCccccccCccccCCCCccEEeCCCCcccccCCCCC
Q 039967 408 STNKLKSSIPKSIGNLLRLCYLDLSNNQFGHKILVEL 444 (445)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~ 444 (445)
++|++++..+..|..+++|++|++++|++++..|..+
T Consensus 478 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 514 (570)
T 2z63_A 478 SQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIF 514 (570)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred CCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHh
Confidence 9999998889999999999999999999997766544
No 12
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.4e-41 Score=348.01 Aligned_cols=430 Identities=22% Similarity=0.204 Sum_probs=354.9
Q ss_pred cEEeccCCcCCCCCCcccCCCCCCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCC-CcccccCCCccEEEecC
Q 039967 10 VHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSI-PLEIGQLSLINVLALCH 88 (445)
Q Consensus 10 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~l~l~~ 88 (445)
+.++.+++.++.++. ..+++++|++++|.+....+..|.++++|++|++++|.....+ |..+.++++|+++++++
T Consensus 7 ~~~dcs~~~L~~vP~----lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~ 82 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ----VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82 (844)
T ss_dssp EEEEESCCCSSCCCS----SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred eEEEccCCCCCCCCC----CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence 467778888887754 4578999999999999888999999999999999999655444 78899999999999999
Q ss_pred cccc----------cccceEEecCCcCCCCcccc--ccCCCCCcEEEccCCcccCCCC-ccccCCCCCceEEeccCcccc
Q 039967 89 NYFV----------CNLANFYLNNNSLFNSIPLV--LGNLNSLSTMDLSQNQFSGSIP-LSLGNLSNLDKLYLYSNSFSG 155 (445)
Q Consensus 89 ~~~~----------~~L~~l~l~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~ 155 (445)
|.+. .+|++|++++|.+.+..+.. +.++++|++|++++|.++...+ ..|..+++|++|++++|.+..
T Consensus 83 N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 83 SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp CCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred CcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence 8764 78999999999998766554 8999999999999999986544 578999999999999999887
Q ss_pred ccCccccCC--CCcCEEeCCCccccccccccccCCCC------CcEEEccCCccCCCCCcccc-----------------
Q 039967 156 SIPSIIGNL--KSLLQLDLSENQLIGSIPLSFGNLSS------LTLMSLFNNSLSGSLPPILG----------------- 210 (445)
Q Consensus 156 ~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~l~~l~~------L~~L~l~~~~~~~~~~~~~~----------------- 210 (445)
..+..+..+ ++|+.|++++|.+....+..+..+++ |+.|++++|.+....+..+.
T Consensus 163 ~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~ 242 (844)
T 3j0a_A 163 VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHI 242 (844)
T ss_dssp CCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSC
T ss_pred eCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccc
Confidence 777777777 89999999999988777666665554 99999999976543332221
Q ss_pred -------------------C--CCCcCEEEccCccccCCCCccccCCCcccEEEeeCccccccChhhhcccccccEEecc
Q 039967 211 -------------------N--LKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELC 269 (445)
Q Consensus 211 -------------------~--l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 269 (445)
. .++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|++|+++
T Consensus 243 ~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls 322 (844)
T 3j0a_A 243 MGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLS 322 (844)
T ss_dssp CBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEE
T ss_pred ccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECC
Confidence 1 2679999999999887777788999999999999999988888889999999999999
Q ss_pred cCccCCCccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCccccccccCCCcceEEcccCccccCCCc---
Q 039967 270 TNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPP--- 346 (445)
Q Consensus 270 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--- 346 (445)
+|.+....+..+..+++|+.|++++|.+....+..|..+++|+.|++++|.+.....+++|+.+++.+|++......
T Consensus 323 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~ 402 (844)
T 3j0a_A 323 YNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLT 402 (844)
T ss_dssp SCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTT
T ss_pred CCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccc
Confidence 99998777888999999999999999998777778999999999999999999887788999999988887632111
Q ss_pred ------------------cccCCCCCcEEECCCCccccccch-hhccccCCCEEEccCCeeec-----ccchhhcCCccC
Q 039967 347 ------------------EIGDSPKLQVLDLSSNNIVGEIPV-QLGKLFSLNKLILNLNQLSG-----GMPLELGSLIEL 402 (445)
Q Consensus 347 ------------------~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~~L 402 (445)
.+..+++|++|++++|.+.+..+. .+..+++|+.|++++|.+.. ..+..+.++++|
T Consensus 403 l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L 482 (844)
T 3j0a_A 403 ANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHL 482 (844)
T ss_dssp CCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCE
T ss_pred cceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccc
Confidence 123577788888888877644322 34557888888888887752 333557788999
Q ss_pred ceeecCCCccccccCccccCCCCccEEeCCCCcccccCCCC
Q 039967 403 QYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQFGHKILVE 443 (445)
Q Consensus 403 ~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~ 443 (445)
+.|++++|++++..+..|..+++|++|++++|++++-.|..
T Consensus 483 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~ 523 (844)
T 3j0a_A 483 QVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHND 523 (844)
T ss_dssp ECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCC
T ss_pred cEEECCCCcccccChhHccchhhhheeECCCCCCCccChhh
Confidence 99999999999888888999999999999999998655543
No 13
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=9.1e-42 Score=338.35 Aligned_cols=408 Identities=19% Similarity=0.263 Sum_probs=281.7
Q ss_pred CCCcEEeccCCcCCCCCCcccCCCCCCcEEeccCcccC------C------CCC---------------------cccc-
Q 039967 7 PHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLS------G------VIP---------------------LEIG- 52 (445)
Q Consensus 7 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~------~------~~~---------------------~~l~- 52 (445)
.+++.|+|+++.+.+..+..++++++|++|++++|.+. + ..| ..+.
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 36778888888777777777888888888888877541 0 000 0000
Q ss_pred ------------------CCCCCcEEEec--CcccccCCCcccccCCCccEEEecCcccccccceEEecCCcCCCC----
Q 039967 53 ------------------HLNQLRILYFD--VNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNS---- 108 (445)
Q Consensus 53 ------------------~~~~L~~L~l~--~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~L~~l~l~~~~~~~~---- 108 (445)
....++.+.+. .+.+++ +|..+.++++|+++++++| .+.+.
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n--------------~l~~~~~~~ 225 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNS--------------PFVAENICE 225 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESC--------------CCCGGGBSS
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCC--------------ccccccccc
Confidence 00011111111 234444 5666666665555544443 33432
Q ss_pred -------------cccccc--CCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCc-ccc-ccCccccCC------C
Q 039967 109 -------------IPLVLG--NLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNS-FSG-SIPSIIGNL------K 165 (445)
Q Consensus 109 -------------~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~-~~~~~~~~l------~ 165 (445)
+|..+. ++++|++|++++|.+....|..+..+++|++|++++|. ++. ..|..+..+ +
T Consensus 226 ~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~ 305 (636)
T 4eco_A 226 AWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGE 305 (636)
T ss_dssp SCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGG
T ss_pred cccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCC
Confidence 677777 77888888888877776777777778888888888776 664 456655554 7
Q ss_pred CcCEEeCCCccccccccc--cccCCCCCcEEEccCCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCc-ccEE
Q 039967 166 SLLQLDLSENQLIGSIPL--SFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSS-LRAL 242 (445)
Q Consensus 166 ~L~~L~l~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L 242 (445)
+|+.|++++|.+. .+|. .+..+++|++|++++|.+.+..| .+..+++|++|++++|.+. ..+..+..+++ |++|
T Consensus 306 ~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L 382 (636)
T 4eco_A 306 KIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENL 382 (636)
T ss_dssp TCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEE
T ss_pred CCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEE
Confidence 7888888888777 5666 67777888888888877775555 6777777888888887776 55556777777 8888
Q ss_pred EeeCccccccChhhhcccc--cccEEecccCccCCCcccccc-------ccCCccEEEcCCCcccCCCCccccccCccce
Q 039967 243 YLYNNGLYSFVPEEIRYLT--SLSELELCTNHLSGVIPHSIG-------NLTGLLLLNMCENHLSGPIPKSFKNLTSVER 313 (445)
Q Consensus 243 ~l~~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~l~-------~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 313 (445)
++++|.+.. .+..+...+ +|++|++++|.+....+..+. .+++|++|++++|.+....+..+..+++|+.
T Consensus 383 ~Ls~N~l~~-lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~ 461 (636)
T 4eco_A 383 SFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSS 461 (636)
T ss_dssp ECCSSCCSS-CCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSE
T ss_pred EccCCcCcc-cchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCE
Confidence 888877764 444444433 678888888777766665555 5667888888888777444444556778888
Q ss_pred eeccCcccccccc--C----------CCcceEEcccCccccCCCcccc--CCCCCcEEECCCCccccccchhhccccCCC
Q 039967 314 VLLNQNNLSGKVN--V----------PKLGTFIISVNNISESIPPEIG--DSPKLQVLDLSSNNIVGEIPVQLGKLFSLN 379 (445)
Q Consensus 314 L~l~~~~~~~~~~--~----------~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 379 (445)
|++++|.+...+. + ++|+.|++++|++. ..+..+. .+++|++|++++|.+++ .|..+.++++|+
T Consensus 462 L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~ 539 (636)
T 4eco_A 462 INLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLK 539 (636)
T ss_dssp EECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCC
T ss_pred EECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCC
Confidence 8888877763322 1 27888888888887 5666665 88889999999888885 777888888999
Q ss_pred EEEcc------CCeeecccchhhcCCccCceeecCCCccccccCccccCCCCccEEeCCCCcccc
Q 039967 380 KLILN------LNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQFGH 438 (445)
Q Consensus 380 ~L~l~------~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~ 438 (445)
.|+++ +|.+.+.+|..++.+++|+.|++++|++. ..|..+. ++|++|++++|++..
T Consensus 540 ~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 540 GFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNIS 601 (636)
T ss_dssp EEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTCE
T ss_pred EEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCcc
Confidence 99884 56666678888888888999999999884 5565554 788899999987763
No 14
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=4e-41 Score=327.71 Aligned_cols=418 Identities=19% Similarity=0.204 Sum_probs=327.0
Q ss_pred cEEeccCCcCCCCCCcccCCCCCCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCCccEEEecCc
Q 039967 10 VHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCHN 89 (445)
Q Consensus 10 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~ 89 (445)
++|+++++.++.++. .+. ++|++|++++|.+.+..+..+.++++|++|++++|.+.+..|..+.++++|+++++++|
T Consensus 3 ~~l~ls~n~l~~ip~-~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPK-DLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCSSCCC-SCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCcccccc-ccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 578888888886643 333 78888888888888777778888888888888888888777788888888888888887
Q ss_pred ccc-------cccceEEecCCcCCC-CccccccCCCCCcEEEccCCcccCCCCccccCCCCC--ceEEeccCcc--cccc
Q 039967 90 YFV-------CNLANFYLNNNSLFN-SIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNL--DKLYLYSNSF--SGSI 157 (445)
Q Consensus 90 ~~~-------~~L~~l~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L--~~L~l~~~~~--~~~~ 157 (445)
.+. ++|++|++++|.+.+ ..|..++++++|++|++++|.++. ..+..+++| +.|.+.+|.+ ....
T Consensus 80 ~l~~lp~~~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~ 156 (520)
T 2z7x_B 80 KLVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKED 156 (520)
T ss_dssp CCCEEECCCCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCC
T ss_pred ceeecCccccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccc
Confidence 653 678899999998887 467889999999999999998874 456777777 9999988877 4344
Q ss_pred CccccC--------------------------CCCcCEEeCCCcc-------ccccccccccCCCCCcEEEccCCccCCC
Q 039967 158 PSIIGN--------------------------LKSLLQLDLSENQ-------LIGSIPLSFGNLSSLTLMSLFNNSLSGS 204 (445)
Q Consensus 158 ~~~~~~--------------------------l~~L~~L~l~~~~-------~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 204 (445)
|..+.. +++|+.+++++|. +.+..+ .+..+++|+.|.+.++.+...
T Consensus 157 ~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~ 235 (520)
T 2z7x_B 157 PEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWN 235 (520)
T ss_dssp TTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHH
T ss_pred cccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHH
Confidence 444433 5667777776664 333333 567777888888777665421
Q ss_pred CCccc---cCCCCcCEEEccCccccCCCCccc-----cCCCcccEEEeeCccccccChhhhccc---ccccEEecccCcc
Q 039967 205 LPPIL---GNLKSLSALGLHINQLSGVIPSSI-----GNLSSLRALYLYNNGLYSFVPEEIRYL---TSLSELELCTNHL 273 (445)
Q Consensus 205 ~~~~~---~~l~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~ 273 (445)
....+ ...++|+++++++|.+....+..+ ..+++|+.++++++.+ ..+...+..+ .+|+.|++++|.+
T Consensus 236 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l 314 (520)
T 2z7x_B 236 SFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRM 314 (520)
T ss_dssp HHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCC
T ss_pred HHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCcc
Confidence 11111 123589999999998875666666 7889999999999887 4332444433 5799999999987
Q ss_pred CCCccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCccccc-------cccCCCcceEEcccCccccCCCc
Q 039967 274 SGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSG-------KVNVPKLGTFIISVNNISESIPP 346 (445)
Q Consensus 274 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-------~~~~~~L~~L~l~~~~~~~~~~~ 346 (445)
.... ....+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ ...+++|+.|++++|++.+..+.
T Consensus 315 ~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~ 392 (520)
T 2z7x_B 315 VHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKK 392 (520)
T ss_dssp CCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGG
T ss_pred cccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCccccc
Confidence 6432 23678899999999999998788899999999999999999875 23488999999999999874444
Q ss_pred -cccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCccccccCccccCCCC
Q 039967 347 -EIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLR 425 (445)
Q Consensus 347 -~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 425 (445)
.+..+++|++|++++|.+++..+..+. ++|+.|++++|++. .+|..+..+++|+.|++++|+++...+..+..+++
T Consensus 393 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~ 469 (520)
T 2z7x_B 393 GDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTS 469 (520)
T ss_dssp CSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred chhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCc
Confidence 578889999999999999877666554 79999999999998 77877779999999999999999555555899999
Q ss_pred ccEEeCCCCcccccC
Q 039967 426 LCYLDLSNNQFGHKI 440 (445)
Q Consensus 426 L~~l~l~~~~~~~~~ 440 (445)
|++|++++|++.+..
T Consensus 470 L~~L~l~~N~~~c~c 484 (520)
T 2z7x_B 470 LQKIWLHTNPWDCSC 484 (520)
T ss_dssp CCEEECCSSCBCCCH
T ss_pred ccEEECcCCCCcccC
Confidence 999999999998653
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1e-41 Score=334.29 Aligned_cols=425 Identities=21% Similarity=0.206 Sum_probs=278.3
Q ss_pred CCCcEEeccCCcCCCCCCcccCCCCCCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCCccEEEe
Q 039967 7 PHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLAL 86 (445)
Q Consensus 7 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l 86 (445)
++|++|++++|.+..+.+..+.++++|++|++++|.+.+..+.++.++++|++|++++|.+.+..+..+.++++|+++++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 46788888888777776677777888888888888777666677777888888888888777655556777777777777
Q ss_pred cCcccc-----------cccceEEecCCcCCCCcc-ccccCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCccc
Q 039967 87 CHNYFV-----------CNLANFYLNNNSLFNSIP-LVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFS 154 (445)
Q Consensus 87 ~~~~~~-----------~~L~~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 154 (445)
++|.+. ++|++|++++|...+.++ ..+.++++|++|++++|.++...|..+..+++|++|++.++.+.
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 185 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA 185 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc
Confidence 766442 356666666665333333 35666666666666666666555556666666666666555543
Q ss_pred cccCcc-ccCCCCcCEEeCCCccccccc--c-ccccCCCCCcEEEccCCccCCCC-------------------------
Q 039967 155 GSIPSI-IGNLKSLLQLDLSENQLIGSI--P-LSFGNLSSLTLMSLFNNSLSGSL------------------------- 205 (445)
Q Consensus 155 ~~~~~~-~~~l~~L~~L~l~~~~~~~~~--~-~~l~~l~~L~~L~l~~~~~~~~~------------------------- 205 (445)
..+.. +..+++|++|++++|.+.+.. + .....+++|+.|++.++.+....
T Consensus 186 -~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~ 264 (549)
T 2z81_A 186 -FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLN 264 (549)
T ss_dssp -THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEE
T ss_pred -ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccc
Confidence 22222 234555556665555544311 0 01122334444444443332100
Q ss_pred ---------CccccCCCCcCEEEccCccccCCC-----CccccCCCcccEEEeeCccccccChhhhcccccccEEecccC
Q 039967 206 ---------PPILGNLKSLSALGLHINQLSGVI-----PSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTN 271 (445)
Q Consensus 206 ---------~~~~~~l~~L~~L~l~~~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 271 (445)
...+..+++++.+++.++.+.... ...+...++|+.+++++|.+...+...+..+++|++|++++|
T Consensus 265 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N 344 (549)
T 2z81_A 265 GLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSEN 344 (549)
T ss_dssp CCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSS
T ss_pred ccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCC
Confidence 011233344444444444332110 001122356778888887776644444457888888888888
Q ss_pred ccCCCcc---ccccccCCccEEEcCCCcccCCCC--ccccccCccceeeccCccccccc----cCCCcceEEcccCcccc
Q 039967 272 HLSGVIP---HSIGNLTGLLLLNMCENHLSGPIP--KSFKNLTSVERVLLNQNNLSGKV----NVPKLGTFIISVNNISE 342 (445)
Q Consensus 272 ~~~~~~~---~~l~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~----~~~~L~~L~l~~~~~~~ 342 (445)
.+.+..+ ..+..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+...+ .+++|+.|++++|.+..
T Consensus 345 ~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~ 424 (549)
T 2z81_A 345 LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRV 424 (549)
T ss_dssp CCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSC
T ss_pred ccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCCccc
Confidence 8764432 235677888888888888764322 35778888888888888876443 26788888888888764
Q ss_pred CCCccccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCccccccCccccC
Q 039967 343 SIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGN 422 (445)
Q Consensus 343 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 422 (445)
. +..+ .++|++|++++|.+++.. ..+++|++|++++|++. .+|. ...+++|++|++++|++++..+..+..
T Consensus 425 l-~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 495 (549)
T 2z81_A 425 V-KTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDR 495 (549)
T ss_dssp C-CTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGG
T ss_pred c-cchh--cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhc
Confidence 3 2222 267888999988887532 57899999999999998 5664 457899999999999999888888999
Q ss_pred CCCccEEeCCCCcccccCC
Q 039967 423 LLRLCYLDLSNNQFGHKIL 441 (445)
Q Consensus 423 ~~~L~~l~l~~~~~~~~~~ 441 (445)
+++|++|++++|+|.+..|
T Consensus 496 l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 496 LTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CTTCCEEECCSSCBCCCHH
T ss_pred CcccCEEEecCCCccCCCc
Confidence 9999999999999998766
No 16
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=4.1e-41 Score=333.67 Aligned_cols=403 Identities=20% Similarity=0.282 Sum_probs=329.3
Q ss_pred CCCcEEeccCcccCCCCCccccCCCCCcEEEecCcccc------c------CCCcccccCCCccEEEecCcccc------
Q 039967 31 SNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLH------G------SIPLEIGQLSLINVLALCHNYFV------ 92 (445)
Q Consensus 31 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~------~------~~~~~~~~l~~L~~l~l~~~~~~------ 92 (445)
.+++.|+++++.+.+..|.+++++++|++|++++|.+. + .+|... +..|+ +++..+.+.
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~ 157 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPRED 157 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGG
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhh
Confidence 47999999999998888899999999999999988652 1 111111 11111 111111100
Q ss_pred -----------------------cccceEEec--CCcCCCCccccccCCCCCcEEEccCCcccCC---------------
Q 039967 93 -----------------------CNLANFYLN--NNSLFNSIPLVLGNLNSLSTMDLSQNQFSGS--------------- 132 (445)
Q Consensus 93 -----------------------~~L~~l~l~--~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--------------- 132 (445)
..++.+++. .|.+.+ +|..++++++|++|++++|.++..
T Consensus 158 ~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~ 236 (636)
T 4eco_A 158 FSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQ 236 (636)
T ss_dssp SCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHH
T ss_pred HHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhc
Confidence 011111111 345565 888999999999999999999864
Q ss_pred --CCcccc--CCCCCceEEeccCccccccCccccCCCCcCEEeCCCcc-ccc-cccccccCC------CCCcEEEccCCc
Q 039967 133 --IPLSLG--NLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQ-LIG-SIPLSFGNL------SSLTLMSLFNNS 200 (445)
Q Consensus 133 --~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~-~~~~~l~~l------~~L~~L~l~~~~ 200 (445)
+|..+. .+++|++|++++|.+....|..+.++++|++|++++|. +.+ ..|..+..+ ++|++|++++|.
T Consensus 237 ~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~ 316 (636)
T 4eco_A 237 QYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN 316 (636)
T ss_dssp HHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC
T ss_pred ccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc
Confidence 888888 99999999999999888899999999999999999998 776 678777766 999999999999
Q ss_pred cCCCCCc--cccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCccccccChhhhccccc-ccEEecccCccCCCc
Q 039967 201 LSGSLPP--ILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTS-LSELELCTNHLSGVI 277 (445)
Q Consensus 201 ~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~ 277 (445)
+. ..|. .+..+++|++|++++|.+....+ .+..+++|++|++++|.+.. .+..+..+++ |++|++++|.+. ..
T Consensus 317 l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~-lp~~l~~l~~~L~~L~Ls~N~l~-~l 392 (636)
T 4eco_A 317 LK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITE-IPANFCGFTEQVENLSFAHNKLK-YI 392 (636)
T ss_dssp CS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEE-CCTTSEEECTTCCEEECCSSCCS-SC
T ss_pred CC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCcccc-ccHhhhhhcccCcEEEccCCcCc-cc
Confidence 99 7787 89999999999999999885555 78889999999999999885 5667888898 999999999998 55
Q ss_pred cccccccC--CccEEEcCCCcccCCCCcccc-------ccCccceeeccCcccccccc-----CCCcceEEcccCccccC
Q 039967 278 PHSIGNLT--GLLLLNMCENHLSGPIPKSFK-------NLTSVERVLLNQNNLSGKVN-----VPKLGTFIISVNNISES 343 (445)
Q Consensus 278 ~~~l~~~~--~L~~L~l~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~-----~~~L~~L~l~~~~~~~~ 343 (445)
+..+.... +|++|++++|.+.+..|..+. .+++|+.|++++|.+...+. +++|+.|++++|++...
T Consensus 393 p~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i 472 (636)
T 4eco_A 393 PNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEI 472 (636)
T ss_dssp CSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBC
T ss_pred chhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCc
Confidence 66665544 899999999999988888777 78899999999999885543 78999999999999844
Q ss_pred CCccccCC-------CCCcEEECCCCccccccchhhc--cccCCCEEEccCCeeecccchhhcCCccCceeec------C
Q 039967 344 IPPEIGDS-------PKLQVLDLSSNNIVGEIPVQLG--KLFSLNKLILNLNQLSGGMPLELGSLIELQYLDL------S 408 (445)
Q Consensus 344 ~~~~~~~~-------~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l------~ 408 (445)
....+... ++|++|++++|.++ .+|..+. .+++|+.|++++|++.+ +|..+..+++|+.|++ +
T Consensus 473 ~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls 550 (636)
T 4eco_A 473 PKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQ 550 (636)
T ss_dssp CSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTT
T ss_pred CHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccc
Confidence 43344333 39999999999998 6777776 89999999999999995 8888999999999999 5
Q ss_pred CCccccccCccccCCCCccEEeCCCCcccccCCCCC
Q 039967 409 TNKLKSSIPKSIGNLLRLCYLDLSNNQFGHKILVEL 444 (445)
Q Consensus 409 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~ 444 (445)
+|++.+..|..+..+++|++|++++|++ +++|..+
T Consensus 551 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~ 585 (636)
T 4eco_A 551 GNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKI 585 (636)
T ss_dssp CCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCC
T ss_pred cCcccccChHHHhcCCCCCEEECCCCcC-CccCHhH
Confidence 6778888899999999999999999999 7899764
No 17
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=6.5e-40 Score=330.31 Aligned_cols=319 Identities=18% Similarity=0.253 Sum_probs=211.9
Q ss_pred cccccc--CCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCc-ccc-ccCccccC-------CCCcCEEeCCCccc
Q 039967 109 IPLVLG--NLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNS-FSG-SIPSIIGN-------LKSLLQLDLSENQL 177 (445)
Q Consensus 109 ~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~-~~~~~~~~-------l~~L~~L~l~~~~~ 177 (445)
+|..++ ++++|++|++++|.+....|..+..+++|+.|++++|. ++. ..|..+.. +++|+.|++++|.+
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L 560 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence 566655 77777777777777666667777777777777777776 553 34443333 34777777777776
Q ss_pred cccccc--cccCCCCCcEEEccCCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCc-ccEEEeeCccccccCh
Q 039967 178 IGSIPL--SFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSS-LRALYLYNNGLYSFVP 254 (445)
Q Consensus 178 ~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~ 254 (445)
. .+|. .+..+++|+.|++++|.+. .+| .+..+++|+.|++++|.+. ..+..+..+++ |+.|++++|.+.. .+
T Consensus 561 ~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~-lp 635 (876)
T 4ecn_A 561 E-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKY-IP 635 (876)
T ss_dssp C-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCS-CC
T ss_pred C-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCc-Cc
Confidence 6 5565 6677777777777777776 455 5666777777777777766 55555666666 7777777777664 34
Q ss_pred hhhcccc--cccEEecccCccCCCcccc---cc--ccCCccEEEcCCCcccCCCCc-cccccCccceeeccCcccccccc
Q 039967 255 EEIRYLT--SLSELELCTNHLSGVIPHS---IG--NLTGLLLLNMCENHLSGPIPK-SFKNLTSVERVLLNQNNLSGKVN 326 (445)
Q Consensus 255 ~~~~~~~--~L~~L~l~~~~~~~~~~~~---l~--~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~ 326 (445)
..+...+ +|+.|++++|.+....+.. +. ..++|+.|++++|.+. .+|. .+..+++|+.|++++|.+...+.
T Consensus 636 ~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~ 714 (876)
T 4ecn_A 636 NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPE 714 (876)
T ss_dssp SCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCT
T ss_pred hhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccCh
Confidence 4444433 3777777777665433211 11 2246777777777776 3343 34466777777777776653222
Q ss_pred ------------CCCcceEEcccCccccCCCcccc--CCCCCcEEECCCCccccccchhhccccCCCEEEccC------C
Q 039967 327 ------------VPKLGTFIISVNNISESIPPEIG--DSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNL------N 386 (445)
Q Consensus 327 ------------~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~------~ 386 (445)
+++|+.|++++|++. ..+..+. .+++|+.|++++|.+.+ +|..+..+++|+.|++++ |
T Consensus 715 ~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N 792 (876)
T 4ecn_A 715 NSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGN 792 (876)
T ss_dssp TSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCC
T ss_pred HHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccc
Confidence 127777777777777 4555555 77888888888888775 566777788888888865 5
Q ss_pred eeecccchhhcCCccCceeecCCCccccccCccccCCCCccEEeCCCCcccc
Q 039967 387 QLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQFGH 438 (445)
Q Consensus 387 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~ 438 (445)
.+.+.+|..+..+++|+.|+|++|++. ..|..+. ++|+.|++++|++..
T Consensus 793 ~l~~~ip~~l~~L~~L~~L~Ls~N~L~-~Ip~~l~--~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 793 RILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKLT--PQLYILDIADNPNIS 841 (876)
T ss_dssp BCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--SSSCEEECCSCTTCE
T ss_pred cccccChHHHhcCCCCCEEECCCCCCC-ccCHhhc--CCCCEEECCCCCCCc
Confidence 566677777778888888888888883 5555554 588888888887764
No 18
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=5.2e-39 Score=315.09 Aligned_cols=425 Identities=18% Similarity=0.175 Sum_probs=317.4
Q ss_pred CCCCcEEeccCCcCCCCCCcccCCCCCCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCCccEEE
Q 039967 6 FPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLA 85 (445)
Q Consensus 6 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~ 85 (445)
|+...+.+.+++.++.++.. +. ++|++|++++|.+.+..+.++.++++|++|++++|.+.+..+..+.++++|++++
T Consensus 4 C~~~~~c~~~~~~l~~ip~~-~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 80 (549)
T 2z81_A 4 CDASGVCDGRSRSFTSIPSG-LT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLD 80 (549)
T ss_dssp ECTTSEEECTTSCCSSCCSC-CC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCceEECCCCcccccccc-CC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEE
Confidence 55666678888888877553 32 7899999999999988888999999999999999999988888999999999999
Q ss_pred ecCcccc----------cccceEEecCCcCCC-CccccccCCCCCcEEEccCCc-ccCCCCccccCCCCCceEEeccCcc
Q 039967 86 LCHNYFV----------CNLANFYLNNNSLFN-SIPLVLGNLNSLSTMDLSQNQ-FSGSIPLSLGNLSNLDKLYLYSNSF 153 (445)
Q Consensus 86 l~~~~~~----------~~L~~l~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~ 153 (445)
+++|.+. ++|++|++++|.+.. ..+..+.++++|++|++++|. +....+..+..+++|++|++.+|.+
T Consensus 81 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l 160 (549)
T 2z81_A 81 LSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL 160 (549)
T ss_dssp CTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred CCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcc
Confidence 9988664 678899999988876 356678888999999998887 4434446788889999999998888
Q ss_pred ccccCccccCCCCcCEEeCCCcccccccccc-ccCCCCCcEEEccCCccCCCC---CccccCCCCcCEEEccCccccCCC
Q 039967 154 SGSIPSIIGNLKSLLQLDLSENQLIGSIPLS-FGNLSSLTLMSLFNNSLSGSL---PPILGNLKSLSALGLHINQLSGVI 229 (445)
Q Consensus 154 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~---~~~~~~l~~L~~L~l~~~~~~~~~ 229 (445)
....+..+..+++|++|+++++.+.. .+.. +..+++|+.|++++|.+.... ......++.|+.++++++.+....
T Consensus 161 ~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 239 (549)
T 2z81_A 161 RNYQSQSLKSIRDIHHLTLHLSESAF-LLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDES 239 (549)
T ss_dssp CEECTTTTTTCSEEEEEEEECSBSTT-HHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHH
T ss_pred cccChhhhhccccCceEecccCcccc-cchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhH
Confidence 87778888888899999998887653 3433 356889999999998887531 122234566777776666543211
Q ss_pred C----cc------------------------------ccCCCcccEEEeeCcccccc-----ChhhhcccccccEEeccc
Q 039967 230 P----SS------------------------------IGNLSSLRALYLYNNGLYSF-----VPEEIRYLTSLSELELCT 270 (445)
Q Consensus 230 ~----~~------------------------------~~~~~~L~~L~l~~~~~~~~-----~~~~~~~~~~L~~L~l~~ 270 (445)
. .. +..+++++.+.+.++.+... ........++|+.+++++
T Consensus 240 ~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~ 319 (549)
T 2z81_A 240 FNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVEN 319 (549)
T ss_dssp HHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEES
T ss_pred HHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEecc
Confidence 1 11 22334444444444433221 111123346788888888
Q ss_pred CccCCCccccccccCCccEEEcCCCcccCCCC---ccccccCccceeeccCccccc-------cccCCCcceEEcccCcc
Q 039967 271 NHLSGVIPHSIGNLTGLLLLNMCENHLSGPIP---KSFKNLTSVERVLLNQNNLSG-------KVNVPKLGTFIISVNNI 340 (445)
Q Consensus 271 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~-------~~~~~~L~~L~l~~~~~ 340 (445)
|.+.......+..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+.+ ...+++|+.|++++|++
T Consensus 320 n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l 399 (549)
T 2z81_A 320 SKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTF 399 (549)
T ss_dssp SCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCC
T ss_pred CccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCC
Confidence 88764333334678899999999998875542 346788899999999998864 34488999999999988
Q ss_pred ccCCCccccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCccccccCccc
Q 039967 341 SESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSI 420 (445)
Q Consensus 341 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 420 (445)
. ..|..+..+++|++|++++|.+.+ .+..+ .++|+.|++++|++.+.. ..+++|++|++++|+++ ..|. .
T Consensus 400 ~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~ 469 (549)
T 2z81_A 400 H-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-A 469 (549)
T ss_dssp C-CCCSCCCCCTTCCEEECTTSCCSC-CCTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-G
T ss_pred c-cCChhhcccccccEEECCCCCccc-ccchh--cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-c
Confidence 7 567778888999999999999873 33333 368999999999887432 57899999999999998 4443 4
Q ss_pred cCCCCccEEeCCCCcccccCCCCC
Q 039967 421 GNLLRLCYLDLSNNQFGHKILVEL 444 (445)
Q Consensus 421 ~~~~~L~~l~l~~~~~~~~~~~~~ 444 (445)
..+++|++|++++|++++..|.++
T Consensus 470 ~~l~~L~~L~Ls~N~l~~~~~~~~ 493 (549)
T 2z81_A 470 SLFPVLLVMKISRNQLKSVPDGIF 493 (549)
T ss_dssp GGCTTCCEEECCSSCCCCCCTTGG
T ss_pred ccCccCCEEecCCCccCCcCHHHH
Confidence 678999999999999998777643
No 19
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=3.6e-38 Score=301.85 Aligned_cols=372 Identities=22% Similarity=0.195 Sum_probs=240.7
Q ss_pred cEEeccCCcCCCCCCcccCCCCCCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCCccEEEecCc
Q 039967 10 VHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCHN 89 (445)
Q Consensus 10 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~ 89 (445)
+.++.+++.+..++. + .++|++|++++|.+.+..+..+.++++|++|+++++.+.+.++
T Consensus 13 ~~~~c~~~~l~~lp~--l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~----------------- 71 (455)
T 3v47_A 13 YNAICINRGLHQVPE--L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIR----------------- 71 (455)
T ss_dssp TEEECCSSCCSSCCC--C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEEC-----------------
T ss_pred cccCcCCCCcccCCC--C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceEC-----------------
Confidence 345555555555533 2 2567777777777776666677777777777777766542221
Q ss_pred ccccccceEEecCCcCCCCccccccCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCc--cccCCCCc
Q 039967 90 YFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPS--IIGNLKSL 167 (445)
Q Consensus 90 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~l~~L 167 (445)
+..+.++++|++|++++|.++...|..|..+++|++|++++|.+....+. .+..+++|
T Consensus 72 --------------------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L 131 (455)
T 3v47_A 72 --------------------NNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSL 131 (455)
T ss_dssp --------------------TTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTC
T ss_pred --------------------cccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccC
Confidence 22344555555555555555544455555555555555555555432222 25555666
Q ss_pred CEEeCCCcccccccccc-ccCCCCCcEEEccCCccCCCCCccccCC--CCcCEEEccCccccCCCCcc--------ccCC
Q 039967 168 LQLDLSENQLIGSIPLS-FGNLSSLTLMSLFNNSLSGSLPPILGNL--KSLSALGLHINQLSGVIPSS--------IGNL 236 (445)
Q Consensus 168 ~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~--------~~~~ 236 (445)
++|++++|.+....|.. +..+++|++|++++|.+....+..+..+ ..++.++++++.+....... +..+
T Consensus 132 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~ 211 (455)
T 3v47_A 132 EMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKN 211 (455)
T ss_dssp CEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTT
T ss_pred CEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhcccccccccccc
Confidence 66666666555444443 4555666666666665555444444443 45666666666554332221 2245
Q ss_pred CcccEEEeeCccccccChhhhccc---ccccEEecccCccCCCc----------ccccc--ccCCccEEEcCCCcccCCC
Q 039967 237 SSLRALYLYNNGLYSFVPEEIRYL---TSLSELELCTNHLSGVI----------PHSIG--NLTGLLLLNMCENHLSGPI 301 (445)
Q Consensus 237 ~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~~~----------~~~l~--~~~~L~~L~l~~~~~~~~~ 301 (445)
++|+.|++++|.+....+..+... ++++.+++++|...... ...+. ..++|+++++++|.+.+..
T Consensus 212 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 291 (455)
T 3v47_A 212 TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALL 291 (455)
T ss_dssp CEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEEC
T ss_pred ceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccc
Confidence 677777777776655444444332 56777777766443211 11111 1246777777777666556
Q ss_pred CccccccCccceeeccCccccccccCCCcceEEcccCccccCCCccccCCCCCcEEECCCCccccccchhhccccCCCEE
Q 039967 302 PKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKL 381 (445)
Q Consensus 302 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 381 (445)
+..+..+++|+.|++++|.+ .+..+..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus 292 ~~~~~~l~~L~~L~Ls~n~l-------------------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 352 (455)
T 3v47_A 292 KSVFSHFTDLEQLTLAQNEI-------------------NKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVL 352 (455)
T ss_dssp TTTTTTCTTCCEEECTTSCC-------------------CEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEE
T ss_pred hhhcccCCCCCEEECCCCcc-------------------cccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEE
Confidence 66666666666666665544 45556678889999999999999987788889999999999
Q ss_pred EccCCeeecccchhhcCCccCceeecCCCccccccCccccCCCCccEEeCCCCcccccCC
Q 039967 382 ILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQFGHKIL 441 (445)
Q Consensus 382 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~ 441 (445)
++++|++.+..+..+.++++|++|++++|+++...+..+..+++|++|++++|++++..|
T Consensus 353 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 353 DLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 999999987778889999999999999999997777788999999999999999998887
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=8.7e-39 Score=322.13 Aligned_cols=367 Identities=21% Similarity=0.256 Sum_probs=275.8
Q ss_pred cccCCCCCccccCCCCCcEEEecCccccc-----------------CCCcccc--cCCCccEEEecCcccccccceEEec
Q 039967 41 NQLSGVIPLEIGHLNQLRILYFDVNQLHG-----------------SIPLEIG--QLSLINVLALCHNYFVCNLANFYLN 101 (445)
Q Consensus 41 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-----------------~~~~~~~--~l~~L~~l~l~~~~~~~~L~~l~l~ 101 (445)
|.+.+ +|..+.++++|++|++++|.+.+ .+|..+. ++++|+.++ ++
T Consensus 435 N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~--------------Ls 499 (876)
T 4ecn_A 435 NRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVE--------------LY 499 (876)
T ss_dssp CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEE--------------EE
T ss_pred Ccccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEE--------------Cc
Confidence 45554 67788899999999999999887 2777766 777555554 44
Q ss_pred CCcCCCCccccccCCCCCcEEEccCCc-ccC-CCCccccC-------CCCCceEEeccCccccccCc--cccCCCCcCEE
Q 039967 102 NNSLFNSIPLVLGNLNSLSTMDLSQNQ-FSG-SIPLSLGN-------LSNLDKLYLYSNSFSGSIPS--IIGNLKSLLQL 170 (445)
Q Consensus 102 ~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~~~-------l~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L 170 (445)
+|.+.+.+|..+.++++|++|++++|. ++. ..|..+.. +++|++|++++|.+. .+|. .+.++++|+.|
T Consensus 500 ~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L 578 (876)
T 4ecn_A 500 NCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLL 578 (876)
T ss_dssp SCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEE
T ss_pred CCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEE
Confidence 455566778888888888888888887 664 45654444 448888888888887 6777 78888888888
Q ss_pred eCCCccccccccccccCCCCCcEEEccCCccCCCCCccccCCCC-cCEEEccCccccCCCCccccCCC--cccEEEeeCc
Q 039967 171 DLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKS-LSALGLHINQLSGVIPSSIGNLS--SLRALYLYNN 247 (445)
Q Consensus 171 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L~l~~~~~~~~~~~~~~~~~--~L~~L~l~~~ 247 (445)
++++|.+. .+| .+..+++|+.|++++|.+. ..|..+..+++ |+.|++++|.+. ..+..+...+ +|+.|++++|
T Consensus 579 ~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N 654 (876)
T 4ecn_A 579 DCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYN 654 (876)
T ss_dssp ECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSS
T ss_pred ECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCC
Confidence 88888877 566 7788888888888888888 67777788888 888888888877 5555555544 4888888888
Q ss_pred cccccChhhh---c--ccccccEEecccCccCCCccccccccCCccEEEcCCCcccCCCCc-ccc-------ccCcccee
Q 039967 248 GLYSFVPEEI---R--YLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPK-SFK-------NLTSVERV 314 (445)
Q Consensus 248 ~~~~~~~~~~---~--~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~-------~~~~L~~L 314 (445)
.+....+... . ..++|+.|++++|.+.......+..+++|+.|++++|.+. .+|. .+. ++++|+.|
T Consensus 655 ~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L 733 (876)
T 4ecn_A 655 KIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTI 733 (876)
T ss_dssp CTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEE
T ss_pred cCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEE
Confidence 8765433211 1 2347888888888887544444557788888888888887 4443 332 23388888
Q ss_pred eccCccccccc------cCCCcceEEcccCccccCCCccccCCCCCcEEECCC------CccccccchhhccccCCCEEE
Q 039967 315 LLNQNNLSGKV------NVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSS------NNIVGEIPVQLGKLFSLNKLI 382 (445)
Q Consensus 315 ~l~~~~~~~~~------~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~------~~~~~~~~~~~~~~~~L~~L~ 382 (445)
++++|.+...+ .+++|+.|++++|++.+ .|..+..+++|+.|++++ |.+.+..|..+.++++|+.|+
T Consensus 734 ~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~ 812 (876)
T 4ecn_A 734 DLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQ 812 (876)
T ss_dssp ECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEE
T ss_pred ECCCCCCccchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEE
Confidence 88888876332 46789999999998886 677888999999999976 777778899999999999999
Q ss_pred ccCCeeecccchhhcCCccCceeecCCCccccccCccccCCCCccEEeCC
Q 039967 383 LNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLS 432 (445)
Q Consensus 383 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~ 432 (445)
+++|++ +.+|..+. ++|+.|+|++|++....+..+.....+..+.+.
T Consensus 813 Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~ 859 (876)
T 4ecn_A 813 IGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLL 859 (876)
T ss_dssp CCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEE
T ss_pred CCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeec
Confidence 999999 47787765 699999999999987766666443333333333
No 21
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=7.7e-38 Score=307.00 Aligned_cols=424 Identities=19% Similarity=0.185 Sum_probs=307.2
Q ss_pred CCCCCcEEeccCCcCCCCCCcccCCCCCCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCCccEE
Q 039967 5 SFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVL 84 (445)
Q Consensus 5 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l 84 (445)
.|...++++++++.++.++.. +. +++++|++++|.+.+..+.++.++++|++|++++|.+.+..|..+.++++|+++
T Consensus 29 ~~~~~~~l~ls~~~L~~ip~~-~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 105 (562)
T 3a79_B 29 SNELESMVDYSNRNLTHVPKD-LP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYL 105 (562)
T ss_dssp ----CCEEECTTSCCCSCCTT-SC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred ccCCCcEEEcCCCCCccCCCC-CC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEE
Confidence 345568999999998876543 33 789999999999998877899999999999999999998778889999999999
Q ss_pred EecCcccc-------cccceEEecCCcCCC-CccccccCCCCCcEEEccCCcccCCCCccccCCCCC--ceEEeccCcc-
Q 039967 85 ALCHNYFV-------CNLANFYLNNNSLFN-SIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNL--DKLYLYSNSF- 153 (445)
Q Consensus 85 ~l~~~~~~-------~~L~~l~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L--~~L~l~~~~~- 153 (445)
++++|.+. ++|++|++++|.+.+ ..|..++++++|++|++++|.++.. .+..+++| +++++.+|.+
T Consensus 106 ~Ls~N~l~~lp~~~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~ 182 (562)
T 3a79_B 106 DVSHNRLQNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYH 182 (562)
T ss_dssp ECTTSCCCEECSCCCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCC
T ss_pred ECCCCcCCccCccccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeeccccc
Confidence 99888664 578888888888776 3457788888888888888887642 34445555 8888888776
Q ss_pred -ccccCccccCC--------------------------CCcCEEeCCCcccc----ccccccccCCCCCcEEEccCCccC
Q 039967 154 -SGSIPSIIGNL--------------------------KSLLQLDLSENQLI----GSIPLSFGNLSSLTLMSLFNNSLS 202 (445)
Q Consensus 154 -~~~~~~~~~~l--------------------------~~L~~L~l~~~~~~----~~~~~~l~~l~~L~~L~l~~~~~~ 202 (445)
....+..+..+ ++|+.+++++|... ......+..+++++.+.+.++.+.
T Consensus 183 ~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~ 262 (562)
T 3a79_B 183 IKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETT 262 (562)
T ss_dssp CCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEEC
T ss_pred ccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCc
Confidence 44444444432 33444444443200 001122334444444444444332
Q ss_pred CC----CCccccCCCCcCEEEccCccccCCCCccc-----cCCCcccEEEeeCccccccChhhhcc---cccccEEeccc
Q 039967 203 GS----LPPILGNLKSLSALGLHINQLSGVIPSSI-----GNLSSLRALYLYNNGLYSFVPEEIRY---LTSLSELELCT 270 (445)
Q Consensus 203 ~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~L~~L~l~~ 270 (445)
.. .+. ....++|+++++++|.+....+..+ ..++.|+.+++..+.+ .+....+.. ..++++|++++
T Consensus 263 ~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~~~~L~~L~l~~ 340 (562)
T 3a79_B 263 WKCSVKLFQ-FFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSVFAEMNIKMLSISD 340 (562)
T ss_dssp HHHHHHHHH-HHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHHHHTCCCSEEEEES
T ss_pred HHHHHHHHH-hhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee-ecChhhhhhhhccCcceEEEccC
Confidence 10 001 1123478888888887765555444 5555666666665554 222222222 25699999999
Q ss_pred CccCCCccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCcccccc-------ccCCCcceEEcccCcccc-
Q 039967 271 NHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGK-------VNVPKLGTFIISVNNISE- 342 (445)
Q Consensus 271 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-------~~~~~L~~L~l~~~~~~~- 342 (445)
|.+.... ....+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+. ..+++|+.|++++|++.+
T Consensus 341 n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~ 418 (562)
T 3a79_B 341 TPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSH 418 (562)
T ss_dssp SCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSC
T ss_pred CCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCc
Confidence 8875322 226778999999999999987888999999999999999998752 347899999999999987
Q ss_pred CCCccccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCccccccCccccC
Q 039967 343 SIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGN 422 (445)
Q Consensus 343 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 422 (445)
.....+..+++|++|++++|.+++..+..+. ++|+.|++++|++. .+|..+..+++|+.|++++|+++...+..+..
T Consensus 419 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~ 495 (562)
T 3a79_B 419 AYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDR 495 (562)
T ss_dssp CSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTT
T ss_pred cChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhc
Confidence 4444678899999999999999866655543 79999999999998 67777779999999999999999554455899
Q ss_pred CCCccEEeCCCCcccccCC
Q 039967 423 LLRLCYLDLSNNQFGHKIL 441 (445)
Q Consensus 423 ~~~L~~l~l~~~~~~~~~~ 441 (445)
+++|+++++++|+|.+..|
T Consensus 496 l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 496 LTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp CTTCCCEECCSCCBCCCHH
T ss_pred CCCCCEEEecCCCcCCCcc
Confidence 9999999999999986543
No 22
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=5.2e-38 Score=305.78 Aligned_cols=394 Identities=23% Similarity=0.221 Sum_probs=301.6
Q ss_pred CCCcEEeccCCcCCCCCCcccCCCCCCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCCccEEEe
Q 039967 7 PHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLAL 86 (445)
Q Consensus 7 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l 86 (445)
++|++|++++|.+..+.+..+..+++|++|++++|.+.+..|..+.++++|++|++++|.+. .+|.. .+++|+++++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEec
Confidence 57888888888877776677778888888888888877666777888888888888888776 34444 6777888887
Q ss_pred cCcccc-----------cccceEEecCCcCCCCccccccCCCCC--cEEEccCCcc--cCCCCccc--------------
Q 039967 87 CHNYFV-----------CNLANFYLNNNSLFNSIPLVLGNLNSL--STMDLSQNQF--SGSIPLSL-------------- 137 (445)
Q Consensus 87 ~~~~~~-----------~~L~~l~l~~~~~~~~~~~~~~~~~~L--~~L~l~~~~~--~~~~~~~~-------------- 137 (445)
++|.+. .+|++|++++|.+.. ..+..+++| +.|++++|.+ ....|..+
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~ 174 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPT 174 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCS
T ss_pred cCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEecc
Confidence 777542 567778887777654 345566666 7777777766 33334333
Q ss_pred ------------cCCCCCceEEeccCc-------cccccCccccCCCCcCEEeCCCccccccccccc---cCCCCCcEEE
Q 039967 138 ------------GNLSNLDKLYLYSNS-------FSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSF---GNLSSLTLMS 195 (445)
Q Consensus 138 ------------~~l~~L~~L~l~~~~-------~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l---~~l~~L~~L~ 195 (445)
..+++|+.+++.+|. +....+ .+..+++|+.|+++++.+.+..+..+ ...++|++|+
T Consensus 175 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~ 253 (520)
T 2z7x_B 175 NKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFS 253 (520)
T ss_dssp SSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEE
T ss_pred Ccchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEE
Confidence 447788888888875 443333 67889999999999888664322222 1246999999
Q ss_pred ccCCccCCCCCccc-----cCCCCcCEEEccCccccCCCCccccCC---CcccEEEeeCccccccChhhhcccccccEEe
Q 039967 196 LFNNSLSGSLPPIL-----GNLKSLSALGLHINQLSGVIPSSIGNL---SSLRALYLYNNGLYSFVPEEIRYLTSLSELE 267 (445)
Q Consensus 196 l~~~~~~~~~~~~~-----~~l~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 267 (445)
+++|.+.+..|..+ ..++.|+.++++++.+ ......+..+ ++|+.|++++|.+.... ....+++|++|+
T Consensus 254 l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~ 330 (520)
T 2z7x_B 254 ISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLD 330 (520)
T ss_dssp EEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEE
T ss_pred eecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEE
Confidence 99999887777777 8889999999998887 2222233322 57999999999876532 125778999999
Q ss_pred cccCccCCCccccccccCCccEEEcCCCcccC--CCCccccccCccceeeccCccccc-c-----ccCCCcceEEcccCc
Q 039967 268 LCTNHLSGVIPHSIGNLTGLLLLNMCENHLSG--PIPKSFKNLTSVERVLLNQNNLSG-K-----VNVPKLGTFIISVNN 339 (445)
Q Consensus 268 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~-~-----~~~~~L~~L~l~~~~ 339 (445)
+++|.+....+..+..+++|++|++++|.+.+ ..+..+..+++|+.|++++|.+.+ . ..+++|+.|++++|+
T Consensus 331 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~ 410 (520)
T 2z7x_B 331 FSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNI 410 (520)
T ss_dssp CCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSC
T ss_pred eECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCC
Confidence 99999987777888999999999999999885 345678899999999999999876 2 236899999999999
Q ss_pred cccCCCccccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchh-hcCCccCceeecCCCcccc
Q 039967 340 ISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLE-LGSLIELQYLDLSTNKLKS 414 (445)
Q Consensus 340 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~ 414 (445)
+++..+..+. ++|++|++++|.++ .+|..+..+++|+.|++++|++. .+|.. +..+++|+.|++++|++..
T Consensus 411 l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c 482 (520)
T 2z7x_B 411 LTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC 482 (520)
T ss_dssp CCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcc
Confidence 9766655554 78999999999998 77777779999999999999998 55554 8899999999999999873
No 23
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=4.6e-36 Score=299.62 Aligned_cols=423 Identities=22% Similarity=0.206 Sum_probs=286.3
Q ss_pred CCcEEeccCCcCCCCCCcccCCCCCCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCCccEEEec
Q 039967 8 HLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALC 87 (445)
Q Consensus 8 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~ 87 (445)
++++|+|++|.++.+++..|.++++|++|++++|.+....+.+|.++++|++|++++|.+....+..|.++++|++++++
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls 132 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 132 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence 78999999999999988899999999999999999998888889999999999999999987666778999988888888
Q ss_pred Ccccc----------cccceEEecCCcCCC-CccccccCCCCCcEEEccCCcccCCCCccccCCCCCc----eEEeccCc
Q 039967 88 HNYFV----------CNLANFYLNNNSLFN-SIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLD----KLYLYSNS 152 (445)
Q Consensus 88 ~~~~~----------~~L~~l~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~----~L~l~~~~ 152 (445)
+|.+. ++|++|++++|.+.. ..|..+..+++|++|++++|.++...+..+..+.+++ .+++..+.
T Consensus 133 ~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~ 212 (635)
T 4g8a_A 133 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 212 (635)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCC
T ss_pred CCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCc
Confidence 77543 567777777777654 3455667777777777777776655454444333222 23344433
Q ss_pred cccccCccccCCCCcCEEeCCCccccc-cc--------------------------------------------------
Q 039967 153 FSGSIPSIIGNLKSLLQLDLSENQLIG-SI-------------------------------------------------- 181 (445)
Q Consensus 153 ~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~-------------------------------------------------- 181 (445)
+....+..+ ....++.+++.++.... ..
T Consensus 213 l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~ 291 (635)
T 4g8a_A 213 MNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 291 (635)
T ss_dssp CCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECC
T ss_pred ccccCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhh
Confidence 321111111 11112222222111000 00
Q ss_pred -------cc----------------------cccCCCCCcEEEccCCccCCCCCccccCCCCcCEEEccCccccCCCCcc
Q 039967 182 -------PL----------------------SFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSS 232 (445)
Q Consensus 182 -------~~----------------------~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 232 (445)
+. .+.....++.|++.++.+..... ..++.|+.+++..+..... ..
T Consensus 292 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~n~~~~~--~~ 366 (635)
T 4g8a_A 292 DYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGNA--FS 366 (635)
T ss_dssp CSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCC---CBCTTCCEEEEESCCSCCB--CC
T ss_pred cccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCc---ccchhhhhcccccccCCCC--cc
Confidence 00 01112223333333333221111 1123333333333332211 12
Q ss_pred ccCCCcccEEEeeCcccccc--ChhhhcccccccEEecccCccCCCccccccccCCccEEEcCCCcccCCC-CccccccC
Q 039967 233 IGNLSSLRALYLYNNGLYSF--VPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPI-PKSFKNLT 309 (445)
Q Consensus 233 ~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~~~ 309 (445)
...+++|+.++++.|.+... .+.......+++++++..+... .....+..++.|+.+++.++...... ...+..++
T Consensus 367 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~ 445 (635)
T 4g8a_A 367 EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 445 (635)
T ss_dssp CCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCT
T ss_pred cccccccccchhhccccccccccccchhhhhhhhhhhccccccc-cccccccccccccchhhhhcccccccccccccccc
Confidence 23456677777776655331 2334445566777777666554 23344566788888888877665443 34677888
Q ss_pred ccceeeccCccccccc-----cCCCcceEEcccCccc-cCCCccccCCCCCcEEECCCCccccccchhhccccCCCEEEc
Q 039967 310 SVERVLLNQNNLSGKV-----NVPKLGTFIISVNNIS-ESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLIL 383 (445)
Q Consensus 310 ~L~~L~l~~~~~~~~~-----~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 383 (445)
.++.++++.|.+.... .++.++.|++++|+.. ...+..+..+++|++|++++|.+++..|..|.++++|+.|+|
T Consensus 446 ~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~L 525 (635)
T 4g8a_A 446 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 525 (635)
T ss_dssp TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEEC
Confidence 8999999988876432 3778999999998754 346778889999999999999999888899999999999999
Q ss_pred cCCeeecccchhhcCCccCceeecCCCccccccCccccCC-CCccEEeCCCCccc
Q 039967 384 NLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNL-LRLCYLDLSNNQFG 437 (445)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~l~l~~~~~~ 437 (445)
++|++.+..+..+.++++|++|++++|+++...+..+..+ ++|++|++++|+|.
T Consensus 526 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 526 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp TTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred CCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence 9999997778889999999999999999998888999888 58999999999997
No 24
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=4.7e-35 Score=280.43 Aligned_cols=345 Identities=29% Similarity=0.419 Sum_probs=180.8
Q ss_pred CCCCcEEeccCCcCCCCCCcccCCCCCCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCCccEEE
Q 039967 6 FPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLA 85 (445)
Q Consensus 6 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~ 85 (445)
++++++|+++++.+..++ .+..+++|++|++++|.+.+..+ +.++++|++|+++++.+.+..+ +.++++|++++
T Consensus 45 l~~l~~L~l~~~~i~~l~--~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ 118 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSID--GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLT 118 (466)
T ss_dssp HHTCCEEECCSSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred hccccEEecCCCCCccCc--chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEE
Confidence 345666666666655542 25556666666666666653332 5666666666666666553222 44444443333
Q ss_pred ecCcccccccceEEecCCcCCCCccccccCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCC
Q 039967 86 LCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLK 165 (445)
Q Consensus 86 l~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~ 165 (445)
+++ |.+... +. +..+++|++|++++|.+.. .+ .+..+++|++|.+.+ .+. . ...+.+++
T Consensus 119 L~~--------------n~l~~~-~~-~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~~-~~~-~-~~~~~~l~ 177 (466)
T 1o6v_A 119 LFN--------------NQITDI-DP-LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFGN-QVT-D-LKPLANLT 177 (466)
T ss_dssp CCS--------------SCCCCC-GG-GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEEE-SCC-C-CGGGTTCT
T ss_pred CCC--------------CCCCCC-hH-HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecCC-ccc-C-chhhccCC
Confidence 333 222222 21 5555666666666655553 22 355556666665542 222 1 11255555
Q ss_pred CcCEEeCCCccccccccccccCCCCCcEEEccCCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEee
Q 039967 166 SLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLY 245 (445)
Q Consensus 166 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 245 (445)
+|+.|++++|.+... ..+..+++|++|++++|.+....+ +..+++|+++++++|.+... ..+..+++|+.|+++
T Consensus 178 ~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~ 251 (466)
T 1o6v_A 178 TLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLA 251 (466)
T ss_dssp TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECC
T ss_pred CCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECC
Confidence 666666665554422 224555555555555555543322 34455555555555544321 234444555555555
Q ss_pred CccccccChhhhcccccccEEecccCccCCCccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCccccccc
Q 039967 246 NNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKV 325 (445)
Q Consensus 246 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 325 (445)
+|.+....+ +..+++|++|++++|.+....+ +..+++|+.|++++|.+.+..+ +..
T Consensus 252 ~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~------------------ 307 (466)
T 1o6v_A 252 NNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISN------------------ 307 (466)
T ss_dssp SSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGG------------------
T ss_pred CCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcC------------------
Confidence 554443222 3444445555554444442221 3444444444444444432211 233
Q ss_pred cCCCcceEEcccCccccCCCccccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCCccCcee
Q 039967 326 NVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYL 405 (445)
Q Consensus 326 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 405 (445)
+++|+.|++++|++.+..+ +..+++|++|++++|.+.+. ..+..+++|+.|++++|++.+..| +..+++|+.|
T Consensus 308 -l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 380 (466)
T 1o6v_A 308 -LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQL 380 (466)
T ss_dssp -CTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEE
T ss_pred -CCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEE
Confidence 3344444444444443322 55677788888888877644 356777788888888887775554 6677788888
Q ss_pred ecCCCcccc
Q 039967 406 DLSTNKLKS 414 (445)
Q Consensus 406 ~l~~~~~~~ 414 (445)
++++|++++
T Consensus 381 ~l~~n~~~~ 389 (466)
T 1o6v_A 381 GLNDQAWTN 389 (466)
T ss_dssp ECCCEEEEC
T ss_pred eccCCcccC
Confidence 888887774
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=3.9e-36 Score=287.77 Aligned_cols=360 Identities=22% Similarity=0.178 Sum_probs=228.3
Q ss_pred CCCcEEeccCCcCCCCCCcccCCCCCCcEEeccCcccCC-CCCccccCCCCCcEEEecCcccccCCCcccccCCCccEEE
Q 039967 7 PHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSG-VIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLA 85 (445)
Q Consensus 7 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~ 85 (445)
++|++|++++|.+..+.+..+.++++|++|++++|.+.. ..+..|.++++|++|++++|.+.+..|..+.++++|++++
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 579999999999998888899999999999999998863 4567899999999999999999877788888888666665
Q ss_pred ecCcccccccceEEecCCcCCCCcccc--ccCCCCCcEEEccCCcccCCCCcc-ccCCCCCceEEeccCccccccCcccc
Q 039967 86 LCHNYFVCNLANFYLNNNSLFNSIPLV--LGNLNSLSTMDLSQNQFSGSIPLS-LGNLSNLDKLYLYSNSFSGSIPSIIG 162 (445)
Q Consensus 86 l~~~~~~~~L~~l~l~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~ 162 (445)
+++| .+.+..+.. +..+++|++|++++|.++...|.. +..+++|++|++++|.+....+..+.
T Consensus 110 L~~n--------------~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 175 (455)
T 3v47_A 110 LTQC--------------NLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLL 175 (455)
T ss_dssp CTTS--------------CCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSG
T ss_pred CCCC--------------CCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhh
Confidence 5554 334333333 777888888888888887665655 77888888888888887766666666
Q ss_pred CC--CCcCEEeCCCcccccccccc--------ccCCCCCcEEEccCCccCCCCCccccCC---CCcCEEEccCccccCCC
Q 039967 163 NL--KSLLQLDLSENQLIGSIPLS--------FGNLSSLTLMSLFNNSLSGSLPPILGNL---KSLSALGLHINQLSGVI 229 (445)
Q Consensus 163 ~l--~~L~~L~l~~~~~~~~~~~~--------l~~l~~L~~L~l~~~~~~~~~~~~~~~l---~~L~~L~l~~~~~~~~~ 229 (445)
.+ ++|+.|+++++.+....+.. +..+++|++|++++|.+....+..+... ++|+.++++++......
T Consensus 176 ~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 255 (455)
T 3v47_A 176 NFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSS 255 (455)
T ss_dssp GGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCC
T ss_pred ccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccc
Confidence 55 67888888888766433222 2345677777777777664444433322 66777777766543211
Q ss_pred CccccCCCcccEEEeeCccccccChhhhc--ccccccEEecccCccCCCccccccccCCccEEEcCCCcccCCCCccccc
Q 039967 230 PSSIGNLSSLRALYLYNNGLYSFVPEEIR--YLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKN 307 (445)
Q Consensus 230 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 307 (445)
. .... +.......+. ..++|+.|++++|.+....+..+..+++|++|++++|.+.+..+..+..
T Consensus 256 ~-~~~~-------------~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 321 (455)
T 3v47_A 256 F-GHTN-------------FKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWG 321 (455)
T ss_dssp T-TCCS-------------SCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred c-chhh-------------hccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcC
Confidence 0 0000 0000011111 2246677777777666555666666677777777777766555666666
Q ss_pred cCccceeeccCccccccccCCCcceEEcccCccccCCCccccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCe
Q 039967 308 LTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQ 387 (445)
Q Consensus 308 ~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 387 (445)
+++|+.|++++|.+.+ ..+..+..+++|++|++++|.+++..|..+..+++|++|++++|+
T Consensus 322 l~~L~~L~Ls~N~l~~-------------------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 382 (455)
T 3v47_A 322 LTHLLKLNLSQNFLGS-------------------IDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ 382 (455)
T ss_dssp CTTCCEEECCSSCCCE-------------------ECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred cccCCEEECCCCccCC-------------------cChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCc
Confidence 6666666666665532 222333444444444444444444444444444445555554444
Q ss_pred eecccchhhcCCccCceeecCCCccc
Q 039967 388 LSGGMPLELGSLIELQYLDLSTNKLK 413 (445)
Q Consensus 388 ~~~~~~~~~~~~~~L~~L~l~~~~~~ 413 (445)
+.+..+..+..+++|+.|++++|++.
T Consensus 383 l~~~~~~~~~~l~~L~~L~l~~N~l~ 408 (455)
T 3v47_A 383 LKSVPDGIFDRLTSLQKIWLHTNPWD 408 (455)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cccCCHhHhccCCcccEEEccCCCcc
Confidence 44333333444444555555544444
No 26
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=7.7e-35 Score=276.40 Aligned_cols=390 Identities=25% Similarity=0.296 Sum_probs=187.0
Q ss_pred CCCCCcEEeccCCcCCCCCCcccCCCCCCcEEeccCcccCCCCCccccCCCCC-------------cEEEecCcccccCC
Q 039967 5 SFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQL-------------RILYFDVNQLHGSI 71 (445)
Q Consensus 5 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L-------------~~L~l~~~~~~~~~ 71 (445)
+.++|++|+++++.+. ..|..++++++|++|++++|.+.+..|..++.+.+| ++|+++++.+.+ +
T Consensus 9 ~~~~L~~L~l~~n~l~-~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-l 86 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-L 86 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-C
T ss_pred ccccchhhhcccCchh-hCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-C
Confidence 4578999999999985 447779999999999999999888888888887765 899999888774 3
Q ss_pred CcccccCCCccEEEecCcccc------cccceEEecCCcCCCCccccccCCCCCcEEEccCCcccCCCCccccCCCCCce
Q 039967 72 PLEIGQLSLINVLALCHNYFV------CNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDK 145 (445)
Q Consensus 72 ~~~~~~l~~L~~l~l~~~~~~------~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 145 (445)
|.. .++|++++++++.+. .+|+++++++|.+.+ ++. ..++|++|++++|.++. +| .+..+++|++
T Consensus 87 p~~---~~~L~~L~l~~n~l~~lp~~~~~L~~L~l~~n~l~~-l~~---~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~ 157 (454)
T 1jl5_A 87 PEL---PPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKA-LSD---LPPLLEYLGVSNNQLEK-LP-ELQNSSFLKI 157 (454)
T ss_dssp CSC---CTTCSEEECCSSCCSSCCCCCTTCCEEECCSSCCSC-CCS---CCTTCCEEECCSSCCSS-CC-CCTTCTTCCE
T ss_pred CCC---cCCCCEEEccCCcCCccccccCCCcEEECCCCccCc-ccC---CCCCCCEEECcCCCCCC-Cc-ccCCCCCCCE
Confidence 332 256667766666543 356666666665543 111 01456666666666653 44 3666666666
Q ss_pred EEeccCccccccCccccCCCCcCEEeCCCccccccccccccCCCCCcEEEccCCccCCCCCccccCCCCcCEEEccCccc
Q 039967 146 LYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQL 225 (445)
Q Consensus 146 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 225 (445)
|++++|.+. ..|.. .++|++|++++|.+.. .| .+..+++|++|++++|.+.. .|.. .++|+++++++|.+
T Consensus 158 L~l~~N~l~-~lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l 227 (454)
T 1jl5_A 158 IDVDNNSLK-KLPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNIL 227 (454)
T ss_dssp EECCSSCCS-CCCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCC
T ss_pred EECCCCcCc-ccCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcC
Confidence 666666655 23332 2466666666666553 33 35666666666666666553 2221 14566666666655
Q ss_pred cCCCCccccCCCcccEEEeeCccccccChhhhcccccccEEecccCccCCCccccccccCCccEEEcCCCcccCCCCccc
Q 039967 226 SGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSF 305 (445)
Q Consensus 226 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 305 (445)
. ..+ .+..+++|++|++++|.+... +. .+++|+.|++++|.+... +. .+++|+.|++++|.+.+. +.
T Consensus 228 ~-~lp-~~~~l~~L~~L~l~~N~l~~l-~~---~~~~L~~L~l~~N~l~~l-~~---~~~~L~~L~ls~N~l~~l-~~-- 294 (454)
T 1jl5_A 228 E-ELP-ELQNLPFLTTIYADNNLLKTL-PD---LPPSLEALNVRDNYLTDL-PE---LPQSLTFLDVSENIFSGL-SE-- 294 (454)
T ss_dssp S-SCC-CCTTCTTCCEEECCSSCCSSC-CS---CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSEE-SC--
T ss_pred C-ccc-ccCCCCCCCEEECCCCcCCcc-cc---cccccCEEECCCCccccc-Cc---ccCcCCEEECcCCccCcc-cC--
Confidence 5 223 355566666666666655542 21 125566666666655532 21 125566666666655531 11
Q ss_pred cccCccceeeccCccccccccC-CCcceEEcccCccccCCCccccCCCCCcEEECCCCccccccchhhccccCCCEEEcc
Q 039967 306 KNLTSVERVLLNQNNLSGKVNV-PKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILN 384 (445)
Q Consensus 306 ~~~~~L~~L~l~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 384 (445)
..++|+.|++++|.+.+.... ++|+.|++++|++.+ .+.. +++|++|++++|.++ ..|. .+++|++|+++
T Consensus 295 -~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~ 365 (454)
T 1jl5_A 295 -LPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVE 365 (454)
T ss_dssp -CCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECC
T ss_pred -cCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECC
Confidence 114566666666666554444 356666666666553 2222 355666666666655 2333 34566666666
Q ss_pred CCeeec--ccchhhcCC-------------ccCceeecCCCcccc--ccCccccCCCCccEEeCCCCcccccCCCC
Q 039967 385 LNQLSG--GMPLELGSL-------------IELQYLDLSTNKLKS--SIPKSIGNLLRLCYLDLSNNQFGHKILVE 443 (445)
Q Consensus 385 ~~~~~~--~~~~~~~~~-------------~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~l~l~~~~~~~~~~~~ 443 (445)
+|++.+ .+|..+..+ ++|+.|++++|++++ ..| .+++.+.+.+|.+.+.+|.|
T Consensus 366 ~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP------~sl~~L~~~~~~~~~~~~~~ 435 (454)
T 1jl5_A 366 YNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIP------ESVEDLRMNSERVVDPYEFA 435 (454)
T ss_dssp SSCCSSCCCCCTTCCEEECCC-------------------------------------------------------
T ss_pred CCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccch------hhHhheeCcCcccCCccccC
Confidence 666654 344444444 455666666665553 111 23445555555555555443
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.4e-34 Score=274.61 Aligned_cols=373 Identities=26% Similarity=0.299 Sum_probs=255.4
Q ss_pred CCCCCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCCc-------------cEEEecCcccc---
Q 039967 29 NLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLI-------------NVLALCHNYFV--- 92 (445)
Q Consensus 29 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L-------------~~l~l~~~~~~--- 92 (445)
+.++|+.|+++++.+ +..|.+++++++|++|++++|.+.+..|..+.++..| ++++++++.+.
T Consensus 9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp 87 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLP 87 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCC
T ss_pred ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCC
Confidence 367899999999999 5889999999999999999999999999999988876 88888877543
Q ss_pred ---cccceEEecCCcCCCCccccccCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcCE
Q 039967 93 ---CNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQ 169 (445)
Q Consensus 93 ---~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 169 (445)
++|+++++++|.+.+ +|. .+++|++|++++|.++. ++.. .++|++|++++|.+.. .| .+.++++|++
T Consensus 88 ~~~~~L~~L~l~~n~l~~-lp~---~~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~ 157 (454)
T 1jl5_A 88 ELPPHLESLVASCNSLTE-LPE---LPQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKI 157 (454)
T ss_dssp SCCTTCSEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCE
T ss_pred CCcCCCCEEEccCCcCCc-ccc---ccCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCE
Confidence 578899998888775 554 24788999999888873 2221 2689999999998874 56 5888999999
Q ss_pred EeCCCccccccccccccCCCCCcEEEccCCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCccc
Q 039967 170 LDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGL 249 (445)
Q Consensus 170 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 249 (445)
|++++|.+.. .|.. .++|++|++++|.+.. .+ .+..+++|+++++++|.+.. .+. ..++|++|++++|.+
T Consensus 158 L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~n~l 227 (454)
T 1jl5_A 158 IDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPD---LPLSLESIVAGNNIL 227 (454)
T ss_dssp EECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCC
T ss_pred EECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCC---CcCcccEEECcCCcC
Confidence 9999998774 4443 3589999999998885 45 57888999999999998764 222 225899999999988
Q ss_pred cccChhhhcccccccEEecccCccCCCccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCcccccccc-CC
Q 039967 250 YSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVN-VP 328 (445)
Q Consensus 250 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~ 328 (445)
... + .+..+++|++|++++|.+... +. .+++|++|++++|.+.+ ++.. .++|+.|++++|.+.+... .+
T Consensus 228 ~~l-p-~~~~l~~L~~L~l~~N~l~~l-~~---~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~~~~~ 297 (454)
T 1jl5_A 228 EEL-P-ELQNLPFLTTIYADNNLLKTL-PD---LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLSELPP 297 (454)
T ss_dssp SSC-C-CCTTCTTCCEEECCSSCCSSC-CS---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEESCCCT
T ss_pred Ccc-c-ccCCCCCCCEEECCCCcCCcc-cc---cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcccCcCC
Confidence 753 4 377888999999999988743 22 24789999999998874 4432 3789999999998887543 36
Q ss_pred CcceEEcccCccccCCCccccCC-CCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCCccCceeec
Q 039967 329 KLGTFIISVNNISESIPPEIGDS-PKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDL 407 (445)
Q Consensus 329 ~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 407 (445)
+|+.|++++|++.+. ..+ ++|++|++++|.+++ .|.. +++|+.|++++|.+. .+|. .+++|+.|++
T Consensus 298 ~L~~L~l~~N~l~~i-----~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L 364 (454)
T 1jl5_A 298 NLYYLNASSNEIRSL-----CDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHV 364 (454)
T ss_dssp TCCEEECCSSCCSEE-----CCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEEC
T ss_pred cCCEEECcCCcCCcc-----cCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEEC
Confidence 899999999988752 223 589999999999985 4433 589999999999998 5565 4789999999
Q ss_pred CCCcccc--ccCccccCC-------------CCccEEeCCCCcccc--cCCCCCC
Q 039967 408 STNKLKS--SIPKSIGNL-------------LRLCYLDLSNNQFGH--KILVELE 445 (445)
Q Consensus 408 ~~~~~~~--~~~~~~~~~-------------~~L~~l~l~~~~~~~--~~~~~~~ 445 (445)
++|++++ ..|..+..+ ++|++|++++|++.+ .+|.+++
T Consensus 365 ~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl~ 419 (454)
T 1jl5_A 365 EYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESVE 419 (454)
T ss_dssp CSSCCSSCCCCCTTCCEEECCC---------------------------------
T ss_pred CCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchhhHh
Confidence 9999987 567777777 899999999999998 8998763
No 28
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=8.9e-34 Score=283.08 Aligned_cols=410 Identities=23% Similarity=0.189 Sum_probs=250.9
Q ss_pred CCCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCCccEEEecCcccc----------cccceEEe
Q 039967 31 SNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCHNYFV----------CNLANFYL 100 (445)
Q Consensus 31 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~----------~~L~~l~l 100 (445)
+++++|+|++|.++...+.+|.++++|++|++++|.+....+.+|.++++|+++++++|.+. .+|++|++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 47999999999999888889999999999999999998777778999998888877776442 34555555
Q ss_pred cCCcCCCCccccccCCCCCcEEEccCCcccCC-CCccccCCCCCceEEeccCccccccCccccCCCCc----CEEeCCCc
Q 039967 101 NNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGS-IPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSL----LQLDLSEN 175 (445)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L----~~L~l~~~ 175 (445)
++|++.+..+..|+++++|++|++++|.++.. .|..+..+++|++|++++|.+....+..+..+.++ ..++++.+
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n 211 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 211 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccC
Confidence 55554444444455555555555555554422 23444445555555555555443333333332222 23444444
Q ss_pred cccccccccccCCCCCcEEEccCCccC-------------------------------CCCCcc----------------
Q 039967 176 QLIGSIPLSFGNLSSLTLMSLFNNSLS-------------------------------GSLPPI---------------- 208 (445)
Q Consensus 176 ~~~~~~~~~l~~l~~L~~L~l~~~~~~-------------------------------~~~~~~---------------- 208 (445)
.+....+.. .....++.+.+.++... ......
T Consensus 212 ~l~~i~~~~-~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~ 290 (635)
T 4g8a_A 212 PMNFIQPGA-FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 290 (635)
T ss_dssp CCCEECTTT-TTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEEC
T ss_pred cccccCccc-ccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhh
Confidence 433221111 11112222222222110 000000
Q ss_pred -----------ccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCccccccChh-------------------hhc
Q 039967 209 -----------LGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPE-------------------EIR 258 (445)
Q Consensus 209 -----------~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-------------------~~~ 258 (445)
+.....++.+.+..+.+... ..+.....++.+++.++.+...... ...
T Consensus 291 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~ 368 (635)
T 4g8a_A 291 LDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV 368 (635)
T ss_dssp CCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCC
T ss_pred hcccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccc
Confidence 01111222222222221111 1122233455555555443322111 111
Q ss_pred ccccccEEecccCccCCC--ccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCcccccc------ccCCCc
Q 039967 259 YLTSLSELELCTNHLSGV--IPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGK------VNVPKL 330 (445)
Q Consensus 259 ~~~~L~~L~l~~~~~~~~--~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~------~~~~~L 330 (445)
.+++|+.+++++|.+... .+.......+++.+++..+... ..+..+..++.|+.+++.++..... ..++++
T Consensus 369 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l 447 (635)
T 4g8a_A 369 DLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 447 (635)
T ss_dssp BCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTC
T ss_pred cccccccchhhccccccccccccchhhhhhhhhhhccccccc-cccccccccccccchhhhhcccccccccccccccccc
Confidence 234445555544443311 1122233445555555555444 2334456677788887777654422 236788
Q ss_pred ceEEcccCccccCCCccccCCCCCcEEECCCCccc-cccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCC
Q 039967 331 GTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIV-GEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLST 409 (445)
Q Consensus 331 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 409 (445)
+.++++.+.+....+..+..++.+++|++++|.+. ...|..+..+++|+.|++++|++.+..|..|.++++|++|+|++
T Consensus 448 ~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~ 527 (635)
T 4g8a_A 448 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 527 (635)
T ss_dssp CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred ccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCC
Confidence 89999999998888888889999999999999754 45778899999999999999999988889999999999999999
Q ss_pred CccccccCccccCCCCccEEeCCCCcccccCCCCC
Q 039967 410 NKLKSSIPKSIGNLLRLCYLDLSNNQFGHKILVEL 444 (445)
Q Consensus 410 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~ 444 (445)
|++++..+..|..+++|++|++++|++++..|+++
T Consensus 528 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l 562 (635)
T 4g8a_A 528 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 562 (635)
T ss_dssp SCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCT
T ss_pred CcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHH
Confidence 99998888899999999999999999998888765
No 29
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.8e-34 Score=276.32 Aligned_cols=296 Identities=23% Similarity=0.191 Sum_probs=143.4
Q ss_pred CCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcCEEeCCCccccccccccccCCCCCcEEEcc
Q 039967 118 SLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLF 197 (445)
Q Consensus 118 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 197 (445)
++++|++++|.++...+..|..+++|++|++++|.+....+..|.++++|++|++++|.+....+..|..+++|++|+++
T Consensus 33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 112 (477)
T 2id5_A 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDIS 112 (477)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECT
T ss_pred CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECC
Confidence 44555555555544444445555555555555555444444445555555555555555443333334455555555555
Q ss_pred CCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCccccccChhhhcccccccEEecccCccCCCc
Q 039967 198 NNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVI 277 (445)
Q Consensus 198 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 277 (445)
+|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....
T Consensus 113 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~ 192 (477)
T 2id5_A 113 ENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIR 192 (477)
T ss_dssp TSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEEC
T ss_pred CCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeC
Confidence 55554444444455555555555555544444444555555555555555555544444555555555555555554444
Q ss_pred cccccccCCccEEEcCCCcccCCCCccccccCccceeeccCccccccc-----cCCCcceEEcccCccccCCCccccCCC
Q 039967 278 PHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKV-----NVPKLGTFIISVNNISESIPPEIGDSP 352 (445)
Q Consensus 278 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-----~~~~L~~L~l~~~~~~~~~~~~~~~~~ 352 (445)
+..+..+++|+.|++++|...+.++.......+|+.|++++|.+.... .+++|+.|++++|++....+..+..++
T Consensus 193 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 272 (477)
T 2id5_A 193 DYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELL 272 (477)
T ss_dssp TTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCT
T ss_pred hhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccc
Confidence 444455555555555555443333332222334444444444333111 122233333333333333333445555
Q ss_pred CCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCccc
Q 039967 353 KLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLK 413 (445)
Q Consensus 353 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 413 (445)
+|++|++++|.+.+..+..|..+++|+.|++++|.+.+..+..|..+++|+.|++++|++.
T Consensus 273 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 273 RLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp TCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred cCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 5555555555555444555555555555555555555333344455555555555555544
No 30
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=9.4e-35 Score=285.10 Aligned_cols=392 Identities=22% Similarity=0.212 Sum_probs=272.5
Q ss_pred CCCcEEeccCCcCCCCCCcccCCCCCCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCCccEEEe
Q 039967 7 PHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLAL 86 (445)
Q Consensus 7 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l 86 (445)
+++++|++++|.+..+.+..+..+++|++|++++|.+.+..+.+|.++++|++|++++|.+. .+|.. .+++|+++++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEEC
Confidence 67899999999888887788899999999999999988777888888999999999999887 45555 7888999998
Q ss_pred cCcccc-----------cccceEEecCCcCCCCccccccCCCCC--cEEEccCCcc--cCCCCcccc-------------
Q 039967 87 CHNYFV-----------CNLANFYLNNNSLFNSIPLVLGNLNSL--STMDLSQNQF--SGSIPLSLG------------- 138 (445)
Q Consensus 87 ~~~~~~-----------~~L~~l~l~~~~~~~~~~~~~~~~~~L--~~L~l~~~~~--~~~~~~~~~------------- 138 (445)
++|.+. ++|++|++++|.+... .+..+++| +.|++++|.+ +...+..+.
T Consensus 129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~ 205 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHP 205 (562)
T ss_dssp CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECS
T ss_pred CCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecC
Confidence 887653 5788899998887653 34444555 8899888877 544444443
Q ss_pred -------------CCCCCceEEeccCccc----cccCccccCCCCcCEEeCCCcccccc----ccccccCCCCCcEEEcc
Q 039967 139 -------------NLSNLDKLYLYSNSFS----GSIPSIIGNLKSLLQLDLSENQLIGS----IPLSFGNLSSLTLMSLF 197 (445)
Q Consensus 139 -------------~l~~L~~L~l~~~~~~----~~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~ 197 (445)
.+++|+.+++.+|... ......+..+++|+.+++.++.+.+. .+.. ...++|++|++.
T Consensus 206 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~-~~~~~L~~L~l~ 284 (562)
T 3a79_B 206 NSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQF-FWPRPVEYLNIY 284 (562)
T ss_dssp SSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHH-HTTSSEEEEEEE
T ss_pred ccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHh-hhcccccEEEEe
Confidence 3557777777776310 01223456677888887776654422 1111 223588888888
Q ss_pred CCccCCCCCccc-----cCCCCcCEEEccCccccCCCC-cccc---CCCcccEEEeeCccccccChhhhcccccccEEec
Q 039967 198 NNSLSGSLPPIL-----GNLKSLSALGLHINQLSGVIP-SSIG---NLSSLRALYLYNNGLYSFVPEEIRYLTSLSELEL 268 (445)
Q Consensus 198 ~~~~~~~~~~~~-----~~l~~L~~L~l~~~~~~~~~~-~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 268 (445)
+|.+.+..|..+ ..++.|+.+++..+.+ ..+ ..+. ...+|+.|++++|.+.... ....+++|++|++
T Consensus 285 ~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l 360 (562)
T 3a79_B 285 NLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNF 360 (562)
T ss_dssp EEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEEC
T ss_pred ccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEEC
Confidence 888776666555 4445555555554443 111 1111 1246788888877765432 1146677888888
Q ss_pred ccCccCCCccccccccCCccEEEcCCCcccCCC--CccccccCccceeeccCccccc-c-----ccCCCcceEEcccCcc
Q 039967 269 CTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPI--PKSFKNLTSVERVLLNQNNLSG-K-----VNVPKLGTFIISVNNI 340 (445)
Q Consensus 269 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~-~-----~~~~~L~~L~l~~~~~ 340 (445)
++|.+.+..+..+..+++|++|++++|.+.+.. +..+..+++|+.|++++|.+.+ . ..+++|+.|++++|++
T Consensus 361 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l 440 (562)
T 3a79_B 361 TQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNML 440 (562)
T ss_dssp CSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCC
T ss_pred CCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCC
Confidence 888777666667777788888888888777432 3456777888888888887765 2 2357788888888887
Q ss_pred ccCCCccccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchh-hcCCccCceeecCCCccc
Q 039967 341 SESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLE-LGSLIELQYLDLSTNKLK 413 (445)
Q Consensus 341 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~ 413 (445)
++..+..+. ++|++|++++|.++ .+|..+..+++|+.|++++|++. .+|.. +..+++|+.|++++|++.
T Consensus 441 ~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 441 TGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWD 510 (562)
T ss_dssp CGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBC
T ss_pred Ccchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcC
Confidence 655444443 67888888888887 55555568888888888888887 45544 778888888888888776
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.2e-33 Score=268.35 Aligned_cols=353 Identities=16% Similarity=0.182 Sum_probs=208.2
Q ss_pred cCCCCCcEEeccCCcCCCCCCcccCCCCCCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCCccE
Q 039967 4 SSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINV 83 (445)
Q Consensus 4 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 83 (445)
+++++|++|++++|.+.++ + .+..+++|++|++++|.+.+. + +..+++|++|++++|.+.+. + +.++++|++
T Consensus 39 ~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~ 110 (457)
T 3bz5_A 39 EQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTY 110 (457)
T ss_dssp HHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCE
T ss_pred hHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCE
Confidence 4456677777777666655 2 466667777777777766643 2 56666777777776666542 2 444444333
Q ss_pred EEecCcccccccceEEecCCcCCCCccccccCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccC
Q 039967 84 LALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGN 163 (445)
Q Consensus 84 l~l~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 163 (445)
+++ ++|.+.+ ++ +..+++|++|++++|.++.. .+..+++|++|++.+|...... .+..
T Consensus 111 L~L--------------~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~ 168 (457)
T 3bz5_A 111 LNC--------------DTNKLTK-LD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTP 168 (457)
T ss_dssp EEC--------------CSSCCSC-CC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTT
T ss_pred EEC--------------CCCcCCe-ec--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--cccc
Confidence 333 3333332 22 55666666666666666542 2556666666666666432122 3555
Q ss_pred CCCcCEEeCCCccccccccccccCCCCCcEEEccCCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEE
Q 039967 164 LKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALY 243 (445)
Q Consensus 164 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 243 (445)
+++|+.|++++|.+.. .| +..+++|+.|.+++|.++.. .+..+++|+.+++++|.+... + +..+++|+.|+
T Consensus 169 l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~i-p--~~~l~~L~~L~ 239 (457)
T 3bz5_A 169 QTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEI-D--VTPLTQLTYFD 239 (457)
T ss_dssp CTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC-C--CTTCTTCSEEE
T ss_pred CCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccccc-C--ccccCCCCEEE
Confidence 6666666666666553 23 55666666666666666543 255566666666666666532 2 55566666666
Q ss_pred eeCccccccChhhhcccccccEEecccCccCCCccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCccccc
Q 039967 244 LYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSG 323 (445)
Q Consensus 244 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 323 (445)
+++|.+.... ...+++|+.|+++++ +|+.+++++|...+.++ +..+++|+.|++++|...+
T Consensus 240 l~~N~l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~ 300 (457)
T 3bz5_A 240 CSVNPLTELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLY 300 (457)
T ss_dssp CCSSCCSCCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCC
T ss_pred eeCCcCCCcC---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccc
Confidence 6666665532 233445555554433 34445555555443333 3456777777777775432
Q ss_pred ccc--CCCcceEEcccCccccCCCccccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCCcc
Q 039967 324 KVN--VPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIE 401 (445)
Q Consensus 324 ~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 401 (445)
... .++|+.++ +..+++|++|++++|.+++. .+.++++|+.|++++|++.+ ++.
T Consensus 301 ~l~~~~~~L~~L~-------------l~~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~--------l~~ 356 (457)
T 3bz5_A 301 LLDCQAAGITELD-------------LSQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQD--------FSS 356 (457)
T ss_dssp EEECTTCCCSCCC-------------CTTCTTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCB--------CTT
T ss_pred eeccCCCcceEec-------------hhhcccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCC--------ccc
Confidence 221 12222222 44557788888888888753 26778888888888887763 346
Q ss_pred CceeecCCCccccccCccccCCCCccEEeCCCCcccccCCCC
Q 039967 402 LQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQFGHKILVE 443 (445)
Q Consensus 402 L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~ 443 (445)
|+.|++++|.+.+. ..+..|+.+++++|+++|++|..
T Consensus 357 L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 357 VGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPD 393 (457)
T ss_dssp GGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTT
T ss_pred cccccccCCcEEec-----ceeeecCccccccCcEEEEcChh
Confidence 67777777777643 34556777788888888888754
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=7.9e-33 Score=264.99 Aligned_cols=326 Identities=30% Similarity=0.426 Sum_probs=267.6
Q ss_pred ccCCCCCcEEeccCCcCCCCCCcccCCCCCCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCCcc
Q 039967 3 FSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLIN 82 (445)
Q Consensus 3 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 82 (445)
+..+++|++|++++|.+..+++ +..+++|++|++++|.+.+..+ +.++++|++|++++|.+.+. + .+.++++|+
T Consensus 64 ~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~ 137 (466)
T 1o6v_A 64 VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDI-D-PLKNLTNLN 137 (466)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-G-GGTTCTTCS
T ss_pred hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCC-h-HHcCCCCCC
Confidence 5678999999999999988754 8999999999999999985544 89999999999999998854 3 277888777
Q ss_pred EEEecCcccccccceEEecCCcCCCCccccccCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCcccc
Q 039967 83 VLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIG 162 (445)
Q Consensus 83 ~l~l~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 162 (445)
++++++|.+ .. ++ .+..+++|++|++.+ .+... ..+..+++|++|++++|.+.. . ..+.
T Consensus 138 ~L~l~~n~l--------------~~-~~-~~~~l~~L~~L~l~~-~~~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~l~ 196 (466)
T 1o6v_A 138 RLELSSNTI--------------SD-IS-ALSGLTSLQQLSFGN-QVTDL--KPLANLTTLERLDISSNKVSD-I-SVLA 196 (466)
T ss_dssp EEEEEEEEE--------------CC-CG-GGTTCTTCSEEEEEE-SCCCC--GGGTTCTTCCEEECCSSCCCC-C-GGGG
T ss_pred EEECCCCcc--------------CC-Ch-hhccCCcccEeecCC-cccCc--hhhccCCCCCEEECcCCcCCC-C-hhhc
Confidence 666665543 32 33 488999999999974 44422 248899999999999999873 2 4578
Q ss_pred CCCCcCEEeCCCccccccccccccCCCCCcEEEccCCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEE
Q 039967 163 NLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRAL 242 (445)
Q Consensus 163 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 242 (445)
.+++|++|++++|.+....+ +..+++|+.|++++|.+... ..+..+++|+.|++++|.+.... .+..+++|+.|
T Consensus 197 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L 270 (466)
T 1o6v_A 197 KLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLA--PLSGLTKLTEL 270 (466)
T ss_dssp GCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCSEE
T ss_pred cCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccch--hhhcCCCCCEE
Confidence 89999999999999875544 67899999999999998753 45788999999999999987443 37889999999
Q ss_pred EeeCccccccChhhhcccccccEEecccCccCCCccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCcccc
Q 039967 243 YLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLS 322 (445)
Q Consensus 243 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 322 (445)
++++|.+....+ +..+++|+.|++++|.+....+ +..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.
T Consensus 271 ~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~ 344 (466)
T 1o6v_A 271 KLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVS 344 (466)
T ss_dssp ECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCC
T ss_pred ECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccC
Confidence 999999887544 7789999999999999885443 7888999999999999886544 567777777777777654
Q ss_pred ccccCCCcceEEcccCccccCCCccccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeec
Q 039967 323 GKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSG 390 (445)
Q Consensus 323 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 390 (445)
+. ..+..+++|++|++++|.+.+..| +..+++|+.|++++|++.+
T Consensus 345 -------------------~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 345 -------------------DV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp -------------------CC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred -------------------Cc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 22 357788999999999999987776 8899999999999999984
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.4e-33 Score=271.45 Aligned_cols=321 Identities=21% Similarity=0.227 Sum_probs=225.4
Q ss_pred cEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCCccEEEecCcccccccceEEecCCcCCCCccccc
Q 039967 34 QYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVL 113 (445)
Q Consensus 34 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~L~~l~l~~~~~~~~~~~~~ 113 (445)
+.++.++..+. ..|..+ .++++.|+++++.+....+..+.++++|+++++ ++|.+....+..|
T Consensus 14 ~~v~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L--------------~~n~i~~~~~~~~ 76 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELEL--------------NENIVSAVEPGAF 76 (477)
T ss_dssp TEEECCSCCCS-SCCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEEC--------------TTSCCCEECTTTT
T ss_pred CEEEeCCCCcC-cCCCCC--CCCCcEEECCCCccceECHhHccCCCCCCEEEC--------------CCCccCEeChhhh
Confidence 45666666666 444444 257888888888877666666777665444444 3444455556667
Q ss_pred cCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcCEEeCCCccccccccccccCCCCCcE
Q 039967 114 GNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTL 193 (445)
Q Consensus 114 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 193 (445)
.++++|++|++++|.++...+..|..+++|++|++++|.+....+..|..+++|++|++++|.+....+..+..+++|++
T Consensus 77 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 156 (477)
T 2id5_A 77 NNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQ 156 (477)
T ss_dssp TTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCE
T ss_pred hCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCE
Confidence 77777888888777777555556777777777777777776566667777777777777777776666666777777777
Q ss_pred EEccCCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCccccccChhhhcccccccEEecccCcc
Q 039967 194 MSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHL 273 (445)
Q Consensus 194 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 273 (445)
|++.+|.+....+..+..+++|+.|++++|.+.......+..+++|+.|++++|......+.......+|+.|++++|.+
T Consensus 157 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l 236 (477)
T 2id5_A 157 LTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNL 236 (477)
T ss_dssp EEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCC
T ss_pred EECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcc
Confidence 77777777755555567777777777777777655556677777777777777665443333333344677777777776
Q ss_pred CCCccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCccccccccCCCcceEEcccCccccCCCccccCCCC
Q 039967 274 SGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPK 353 (445)
Q Consensus 274 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 353 (445)
.......+..+++|+.|++++|.+.+..+..|..+++|+.|++++|. +....+..+..+++
T Consensus 237 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-------------------l~~~~~~~~~~l~~ 297 (477)
T 2id5_A 237 TAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQ-------------------LAVVEPYAFRGLNY 297 (477)
T ss_dssp CSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSC-------------------CSEECTTTBTTCTT
T ss_pred cccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCc-------------------cceECHHHhcCccc
Confidence 65444556666777777777776665555556666666666665554 44556678889999
Q ss_pred CcEEECCCCccccccchhhccccCCCEEEccCCeeec
Q 039967 354 LQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSG 390 (445)
Q Consensus 354 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 390 (445)
|++|++++|.+++..+..|..+++|+.|++++|++.+
T Consensus 298 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 298 LRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp CCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred CCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccC
Confidence 9999999999998777888999999999999999874
No 34
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=6.8e-32 Score=248.86 Aligned_cols=285 Identities=29% Similarity=0.392 Sum_probs=165.3
Q ss_pred ccCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcCEEeCCCccccccccccccCCCCCc
Q 039967 113 LGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLT 192 (445)
Q Consensus 113 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 192 (445)
+..+++|++|++++|.++.. +. +..+++|++|++++|.+.. . ..+..+++|++|++++|.+... +. +..+++|+
T Consensus 62 ~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~L~l~~n~i~~~-~~-~~~l~~L~ 135 (347)
T 4fmz_A 62 IEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITD-I-SALQNLTNLRELYLNEDNISDI-SP-LANLTKMY 135 (347)
T ss_dssp GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCSEEECTTSCCCCC-GG-GTTCTTCC
T ss_pred hhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccC-c-hHHcCCCcCCEEECcCCcccCc-hh-hccCCcee
Confidence 44555555555555555432 21 5555555555555555442 1 2345555555555555554422 22 44555555
Q ss_pred EEEccCCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCccccccChhhhcccccccEEecccCc
Q 039967 193 LMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNH 272 (445)
Q Consensus 193 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 272 (445)
.|++++|..... ...+..+++|+.+++++|.+.... .+..+++|+.|++++|.+....+ +..+++|+.+++++|.
T Consensus 136 ~L~l~~n~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~ 210 (347)
T 4fmz_A 136 SLNLGANHNLSD-LSPLSNMTGLNYLTVTESKVKDVT--PIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQ 210 (347)
T ss_dssp EEECTTCTTCCC-CGGGTTCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSC
T ss_pred EEECCCCCCccc-ccchhhCCCCcEEEecCCCcCCch--hhccCCCCCEEEccCCccccccc--ccCCCccceeecccCC
Confidence 555555533322 222444455555555554443221 13444455555555544443211 3344444455554444
Q ss_pred cCCCccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCccccccccCCCcceEEcccCccccCCCccccCCC
Q 039967 273 LSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSP 352 (445)
Q Consensus 273 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 352 (445)
+....+ +..+++|++|++++|.+.+..+ +.. +++|+.|++++|.+... ..+..++
T Consensus 211 l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~-------------------l~~L~~L~l~~n~l~~~--~~~~~l~ 265 (347)
T 4fmz_A 211 ITDITP--VANMTRLNSLKIGNNKITDLSP--LAN-------------------LSQLTWLEIGTNQISDI--NAVKDLT 265 (347)
T ss_dssp CCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTT-------------------CTTCCEEECCSSCCCCC--GGGTTCT
T ss_pred CCCCch--hhcCCcCCEEEccCCccCCCcc--hhc-------------------CCCCCEEECCCCccCCC--hhHhcCC
Confidence 432221 3444444444444444442211 333 44555555555555432 4577889
Q ss_pred CCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCccccccCccccCCCCccEEeCC
Q 039967 353 KLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLS 432 (445)
Q Consensus 353 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~ 432 (445)
+|++|++++|.+++. ..+..+++|+.|++++|++.+..+..++.+++|+.|++++|++++..+ +..+++|++|+++
T Consensus 266 ~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~ 341 (347)
T 4fmz_A 266 KLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFA 341 (347)
T ss_dssp TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSS
T ss_pred CcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehh
Confidence 999999999998854 357889999999999999987888889999999999999999986555 8889999999999
Q ss_pred CCccc
Q 039967 433 NNQFG 437 (445)
Q Consensus 433 ~~~~~ 437 (445)
+|+++
T Consensus 342 ~N~i~ 346 (347)
T 4fmz_A 342 NQVIK 346 (347)
T ss_dssp CC---
T ss_pred hhccc
Confidence 99986
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2.4e-32 Score=255.82 Aligned_cols=308 Identities=21% Similarity=0.208 Sum_probs=175.5
Q ss_pred ccceEEecCCcCCCCccccccCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcCEEeCC
Q 039967 94 NLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLS 173 (445)
Q Consensus 94 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 173 (445)
+++.++++++.+....+..+..+++|++|+++++.++...+..|..+++|++|++++|.+....+..+.++++|++|+++
T Consensus 46 ~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 125 (390)
T 3o6n_A 46 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 125 (390)
T ss_dssp CCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECC
Confidence 44444444444443333345556666666666666654444556666666666666666654445555666666666666
Q ss_pred CccccccccccccCCCCCcEEEccCCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCccccccC
Q 039967 174 ENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFV 253 (445)
Q Consensus 174 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 253 (445)
+|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+... .+..+++|+.+++++|.+...
T Consensus 126 ~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~~- 201 (390)
T 3o6n_A 126 RNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL- 201 (390)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSEE-
T ss_pred CCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccccc-
Confidence 6665533333345566666666666666554455555566666666666655432 234445556666655544331
Q ss_pred hhhhcccccccEEecccCccCCCccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCccccccccCCCcceE
Q 039967 254 PEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTF 333 (445)
Q Consensus 254 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L 333 (445)
...++|++|++++|.+..... ...++|+.|++++|.+.+. ..+..+++|++|
T Consensus 202 ----~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L------------------- 253 (390)
T 3o6n_A 202 ----AIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT--AWLLNYPGLVEV------------------- 253 (390)
T ss_dssp ----ECCSSCSEEECCSSCCCEEEC---CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEE-------------------
T ss_pred ----CCCCcceEEECCCCeeeeccc---cccccccEEECCCCCCccc--HHHcCCCCccEE-------------------
Confidence 223455555555555542211 1224555555555555432 234444444444
Q ss_pred EcccCccccCCCccccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCccc
Q 039967 334 IISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLK 413 (445)
Q Consensus 334 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 413 (445)
++++|.+.+..+..+..+++|++|++++|.+++ .+..+..+++|+.|++++|++. .+|..+..+++|+.|++++|+++
T Consensus 254 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~ 331 (390)
T 3o6n_A 254 DLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 331 (390)
T ss_dssp ECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCC
T ss_pred ECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccc
Confidence 455555544455666677777777777777763 3445556777777777777776 45555666777777777777776
Q ss_pred cccCccccCCCCccEEeCCCCcccc
Q 039967 414 SSIPKSIGNLLRLCYLDLSNNQFGH 438 (445)
Q Consensus 414 ~~~~~~~~~~~~L~~l~l~~~~~~~ 438 (445)
.. .+..+++|++|++++|+|..
T Consensus 332 ~~---~~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 332 TL---KLSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp CC---CCCTTCCCSEEECCSSCEEH
T ss_pred ee---CchhhccCCEEEcCCCCccc
Confidence 43 25566777777777777764
No 36
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=6.6e-31 Score=242.24 Aligned_cols=308 Identities=26% Similarity=0.438 Sum_probs=248.2
Q ss_pred cccCCCCCcEEEecCcccccCCCcccccCCCccEEEecCcccccccceEEecCCcCCCCccccccCCCCCcEEEccCCcc
Q 039967 50 EIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQF 129 (445)
Q Consensus 50 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 129 (445)
.+..+++|+.|+++++.+.. .+ .+..+++|+++++ ++|.+.. ++. +..+++|++|++++|.+
T Consensus 39 ~~~~l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l--------------~~n~i~~-~~~-~~~l~~L~~L~L~~n~i 100 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNL--------------NGNQITD-ISP-LSNLVKLTNLYIGTNKI 100 (347)
T ss_dssp CHHHHTTCSEEECCSSCCCC-CT-TGGGCTTCCEEEC--------------CSSCCCC-CGG-GTTCTTCCEEECCSSCC
T ss_pred cchhcccccEEEEeCCcccc-ch-hhhhcCCccEEEc--------------cCCcccc-chh-hhcCCcCCEEEccCCcc
Confidence 45578999999999998873 33 4677775555554 4455443 333 89999999999999999
Q ss_pred cCCCCccccCCCCCceEEeccCccccccCccccCCCCcCEEeCCCccccccccccccCCCCCcEEEccCCccCCCCCccc
Q 039967 130 SGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPIL 209 (445)
Q Consensus 130 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 209 (445)
+. . ..+..+++|++|++++|.+.. .+. +..+++|++|++++|...... ..+..+++|++|.+.++.+....+ +
T Consensus 101 ~~-~-~~~~~l~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~ 173 (347)
T 4fmz_A 101 TD-I-SALQNLTNLRELYLNEDNISD-ISP-LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--I 173 (347)
T ss_dssp CC-C-GGGTTCTTCSEEECTTSCCCC-CGG-GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--G
T ss_pred cC-c-hHHcCCCcCCEEECcCCcccC-chh-hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--h
Confidence 85 3 369999999999999999874 333 889999999999999765444 448999999999999999875433 7
Q ss_pred cCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCccccccChhhhcccccccEEecccCccCCCccccccccCCccE
Q 039967 210 GNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLL 289 (445)
Q Consensus 210 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 289 (445)
..+++|+++++++|.+.... .+..+++|+.+++++|.+....+ +..+++|++|++++|.+....+ +..+++|++
T Consensus 174 ~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 247 (347)
T 4fmz_A 174 ANLTDLYSLSLNYNQIEDIS--PLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTW 247 (347)
T ss_dssp GGCTTCSEEECTTSCCCCCG--GGGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred ccCCCCCEEEccCCcccccc--cccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCE
Confidence 88999999999999887443 37789999999999999887543 7788999999999999885543 888999999
Q ss_pred EEcCCCcccCCCCccccccCccceeeccCccccccccCCCcceEEcccCccccCCCccccCCCCCcEEECCCCccccccc
Q 039967 290 LNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIP 369 (445)
Q Consensus 290 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 369 (445)
|++++|.+.+. ..+..+++|+.|++++|.+. + . ..+..+++|++|++++|.+++..+
T Consensus 248 L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~-------------------~-~-~~~~~l~~L~~L~L~~n~l~~~~~ 304 (347)
T 4fmz_A 248 LEIGTNQISDI--NAVKDLTKLKMLNVGSNQIS-------------------D-I-SVLNNLSQLNSLFLNNNQLGNEDM 304 (347)
T ss_dssp EECCSSCCCCC--GGGTTCTTCCEEECCSSCCC-------------------C-C-GGGGGCTTCSEEECCSSCCCGGGH
T ss_pred EECCCCccCCC--hhHhcCCCcCEEEccCCccC-------------------C-C-hhhcCCCCCCEEECcCCcCCCcCh
Confidence 99999988743 45667777777777777654 2 1 356778999999999999998888
Q ss_pred hhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCccc
Q 039967 370 VQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLK 413 (445)
Q Consensus 370 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 413 (445)
..+..+++|+.|++++|++.+..+ +..+++|+.|++++|.++
T Consensus 305 ~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 305 EVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp HHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred hHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 889999999999999999985545 778999999999999886
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.8e-31 Score=249.82 Aligned_cols=269 Identities=23% Similarity=0.238 Sum_probs=183.7
Q ss_pred ccccccCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcCEEeCCCccccccccccccCC
Q 039967 109 IPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNL 188 (445)
Q Consensus 109 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l 188 (445)
.+..+..+++|++|++++|.++...+..+..+++|++|++++|.+....+..|..+++|++|++++|.+....+..+..+
T Consensus 85 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 164 (390)
T 3o6n_A 85 DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQAT 164 (390)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSC
T ss_pred ChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCC
Confidence 33456666677777777777665556666777777777777776663333345667777777777777665555566677
Q ss_pred CCCcEEEccCCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCccccccChhhhcccccccEEec
Q 039967 189 SSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELEL 268 (445)
Q Consensus 189 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 268 (445)
++|++|++++|.+... .+..++.|+.++++++.+. .+...++|+.|++++|.+..... ...++|+.|++
T Consensus 165 ~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~-----~~~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l 233 (390)
T 3o6n_A 165 TSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSINVVRG---PVNVELTILKL 233 (390)
T ss_dssp TTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCS-----EEECCSSCSEEECCSSCCCEEEC---CCCSSCCEEEC
T ss_pred CCCCEEECCCCcCCcc---ccccccccceeeccccccc-----ccCCCCcceEEECCCCeeeeccc---cccccccEEEC
Confidence 7777777777766533 2455677777777777654 23344577888888877765422 22467888888
Q ss_pred ccCccCCCccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCccccccccCCCcceEEcccCccccCCCccc
Q 039967 269 CTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEI 348 (445)
Q Consensus 269 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 348 (445)
++|.+... ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+ .+...
T Consensus 234 ~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--------------------~~~~~ 291 (390)
T 3o6n_A 234 QHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA--------------------LNLYG 291 (390)
T ss_dssp CSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE--------------------EECSS
T ss_pred CCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc--------------------cCccc
Confidence 88887643 467778888899998888886677788888888888888877642 22233
Q ss_pred cCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCcccc
Q 039967 349 GDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKS 414 (445)
Q Consensus 349 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 414 (445)
..+++|++|++++|.+. ..|..+..+++|+.|++++|++... + +..+++|+.|++++|++..
T Consensus 292 ~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 292 QPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp SCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEH
T ss_pred CCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccc
Confidence 45677888888888776 4555667777888888888877633 2 5567778888888887764
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=2.1e-31 Score=262.72 Aligned_cols=308 Identities=21% Similarity=0.210 Sum_probs=183.3
Q ss_pred ccceEEecCCcCCCCccccccCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcCEEeCC
Q 039967 94 NLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLS 173 (445)
Q Consensus 94 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 173 (445)
+++.++++++.+....+..+..+++|++|++++|.++...+..|..+++|++|++++|.+....+..|.++++|++|+++
T Consensus 52 ~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 131 (597)
T 3oja_B 52 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 131 (597)
T ss_dssp CCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEee
Confidence 44455555555444444445666666666666666665555566666666666666666655455555666666666666
Q ss_pred CccccccccccccCCCCCcEEEccCCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCccccccC
Q 039967 174 ENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFV 253 (445)
Q Consensus 174 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 253 (445)
+|.+....+..|..+++|++|++++|.+....+..+..+++|++|++++|.+... .+..+++|+.+++++|.+..
T Consensus 132 ~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~~-- 206 (597)
T 3oja_B 132 RNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST-- 206 (597)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCSE--
T ss_pred CCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCcccc--
Confidence 6666543333345666666666666666655555566666666666666655432 23445556666666655443
Q ss_pred hhhhcccccccEEecccCccCCCccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCccccccccCCCcceE
Q 039967 254 PEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTF 333 (445)
Q Consensus 254 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L 333 (445)
+...++|+.|++++|.+...... ..++|+.|++++|.+.+ +..+..+++|+.|
T Consensus 207 ---l~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L------------------- 259 (597)
T 3oja_B 207 ---LAIPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTD--TAWLLNYPGLVEV------------------- 259 (597)
T ss_dssp ---EECCTTCSEEECCSSCCCEEECS---CCSCCCEEECCSSCCCC--CGGGGGCTTCSEE-------------------
T ss_pred ---ccCCchhheeeccCCcccccccc---cCCCCCEEECCCCCCCC--ChhhccCCCCCEE-------------------
Confidence 12234556666666555422211 12455566666655543 2334444444444
Q ss_pred EcccCccccCCCccccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCccc
Q 039967 334 IISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLK 413 (445)
Q Consensus 334 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 413 (445)
++++|.+.+..+..+..+++|++|++++|.+++ .|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|+++
T Consensus 260 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~ 337 (597)
T 3oja_B 260 DLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 337 (597)
T ss_dssp ECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCC
T ss_pred ECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCC
Confidence 555555555556667777777777777777764 4555566777777777777777 55666677777778888777776
Q ss_pred cccCccccCCCCccEEeCCCCcccc
Q 039967 414 SSIPKSIGNLLRLCYLDLSNNQFGH 438 (445)
Q Consensus 414 ~~~~~~~~~~~~L~~l~l~~~~~~~ 438 (445)
.. .+..+++|++|++++|+|.+
T Consensus 338 ~~---~~~~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 338 TL---KLSTHHTLKNLTLSHNDWDC 359 (597)
T ss_dssp CC---CCCTTCCCSEEECCSSCEEH
T ss_pred Cc---ChhhcCCCCEEEeeCCCCCC
Confidence 43 25566777777888777764
No 39
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.97 E-value=3.2e-30 Score=244.92 Aligned_cols=327 Identities=19% Similarity=0.207 Sum_probs=167.9
Q ss_pred cccCCCCCCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCCccEEEecCcccccccceEEecCCc
Q 039967 25 PQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNS 104 (445)
Q Consensus 25 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~L~~l~l~~~~ 104 (445)
..+.++++|++|++++|.+.+. | .+..+++|++|++++|.+.+. + +..+++|++++ +++|.
T Consensus 36 ~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~--------------Ls~N~ 96 (457)
T 3bz5_A 36 ISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLA--------------CDSNK 96 (457)
T ss_dssp EEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEE--------------CCSSC
T ss_pred cChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEE--------------CcCCC
Confidence 3455566666777666666643 3 466666666666666666532 1 33444333332 22233
Q ss_pred CCCCccccccCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcCEEeCCCcccccccccc
Q 039967 105 LFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLS 184 (445)
Q Consensus 105 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 184 (445)
+.+. + ++.+++|++|++++|.++.. + +..+++|++|++++|.+.. . .+..+++|+.|++++|...... .
T Consensus 97 l~~~-~--~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~-l--~l~~l~~L~~L~l~~n~~~~~~--~ 165 (457)
T 3bz5_A 97 LTNL-D--VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTE-I--DVSHNTQLTELDCHLNKKITKL--D 165 (457)
T ss_dssp CSCC-C--CTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSC-C--CCTTCTTCCEEECTTCSCCCCC--C
T ss_pred Ccee-e--cCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCccce-e--ccccCCcCCEEECCCCCccccc--c
Confidence 2321 1 44555555555555555432 2 4555555555555555542 1 1444555555555555322222 2
Q ss_pred ccCCCCCcEEEccCCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCccccccChhhhccccccc
Q 039967 185 FGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLS 264 (445)
Q Consensus 185 l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 264 (445)
+..+++|+.|++++|.++. .+ +..+++|+.+++++|.+ ... .+..+++|+
T Consensus 166 ~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l------------------------~~~---~l~~l~~L~ 215 (457)
T 3bz5_A 166 VTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNI------------------------TKL---DLNQNIQLT 215 (457)
T ss_dssp CTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCC------------------------SCC---CCTTCTTCS
T ss_pred cccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcC------------------------Cee---ccccCCCCC
Confidence 3444555555555554443 12 34444455555544444 332 133444455
Q ss_pred EEecccCccCCCccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCccccccccCCCcceEEcccCccccCC
Q 039967 265 ELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESI 344 (445)
Q Consensus 265 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 344 (445)
+|++++|.+... + +..+++|++|++++|.+.+.. ...+++|+.+.++++ +|+.+++++|...+..
T Consensus 216 ~L~Ls~N~l~~i-p--~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n---------~L~~L~l~~n~~~~~~ 280 (457)
T 3bz5_A 216 FLDCSSNKLTEI-D--VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT---------DLLEIDLTHNTQLIYF 280 (457)
T ss_dssp EEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTC---------CCSCCCCTTCTTCCEE
T ss_pred EEECcCCccccc-C--ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCC---------CCCEEECCCCccCCcc
Confidence 555555544431 1 344455555555555554322 223444444444433 2334444444433222
Q ss_pred CccccCCCCCcEEECCCCccccccch--------hhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCcccccc
Q 039967 345 PPEIGDSPKLQVLDLSSNNIVGEIPV--------QLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSI 416 (445)
Q Consensus 345 ~~~~~~~~~L~~L~l~~~~~~~~~~~--------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 416 (445)
+ ...|++|+.|++++|...+..|. .+.++++|+.|++++|++.+. .++.+++|+.|++++|++.+
T Consensus 281 ~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~-- 353 (457)
T 3bz5_A 281 Q--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQD-- 353 (457)
T ss_dssp E--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCB--
T ss_pred c--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCC--
Confidence 2 23456666666666654333332 134457888888888888753 37778888888888888874
Q ss_pred CccccCCCCccEEeCCCCccccc
Q 039967 417 PKSIGNLLRLCYLDLSNNQFGHK 439 (445)
Q Consensus 417 ~~~~~~~~~L~~l~l~~~~~~~~ 439 (445)
++.|..+.+.+|.+.|.
T Consensus 354 ------l~~L~~L~l~~n~l~g~ 370 (457)
T 3bz5_A 354 ------FSSVGKIPALNNNFEAE 370 (457)
T ss_dssp ------CTTGGGSSGGGTSEEEE
T ss_pred ------ccccccccccCCcEEec
Confidence 24566667777777654
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=1.9e-30 Score=255.82 Aligned_cols=309 Identities=22% Similarity=0.238 Sum_probs=197.0
Q ss_pred CCCCcEEEecCcccccCCCcccccCCCccEEEecCcccccccceEEecCCcCCCCccccccCCCCCcEEEccCCcccCCC
Q 039967 54 LNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSI 133 (445)
Q Consensus 54 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 133 (445)
+.+++.++++++.+....+..+..++.|+.+++ ++|.+....+..+..+++|++|++++|.++...
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L--------------~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 115 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNL--------------NDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLP 115 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEEC--------------TTSCCCEECTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEEC--------------CCCCCCCCChHHhcCCCCCCEEECCCCcCCCCC
Confidence 345666666666555433333455554333333 333334444456677777777777777777666
Q ss_pred CccccCCCCCceEEeccCccccccCccccCCCCcCEEeCCCccccccccccccCCCCCcEEEccCCccCCCCCccccCCC
Q 039967 134 PLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLK 213 (445)
Q Consensus 134 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~ 213 (445)
+..|..+++|++|++++|.+....+..|.++++|++|++++|.+....|..+..+++|++|++++|.+... .+..++
T Consensus 116 ~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~ 192 (597)
T 3oja_B 116 PHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIP 192 (597)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCT
T ss_pred HHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---Chhhhh
Confidence 66677777777777777777644444456777777777777777666666677777777777777776643 245567
Q ss_pred CcCEEEccCccccCCCCccccCCCcccEEEeeCccccccChhhhcccccccEEecccCccCCCccccccccCCccEEEcC
Q 039967 214 SLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMC 293 (445)
Q Consensus 214 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 293 (445)
.|+.+++++|.+. .+...++|+.|++++|.+....... .++|+.|++++|.+.. +..+..+++|+.|+++
T Consensus 193 ~L~~L~l~~n~l~-----~l~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls 262 (597)
T 3oja_B 193 SLFHANVSYNLLS-----TLAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLS 262 (597)
T ss_dssp TCSEEECCSSCCS-----EEECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECC
T ss_pred hhhhhhcccCccc-----cccCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECC
Confidence 7777777777654 2344567888888887776543222 3578888888888764 3567778888888888
Q ss_pred CCcccCCCCccccccCccceeeccCccccccccCCCcceEEcccCccccCCCccccCCCCCcEEECCCCccccccchhhc
Q 039967 294 ENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLG 373 (445)
Q Consensus 294 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 373 (445)
+|.+.+..+..|..+++|+.|++++|.+.+. +..+..+++|++|++++|.+. .+|..+.
T Consensus 263 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l--------------------~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~ 321 (597)
T 3oja_B 263 YNELEKIMYHPFVKMQRLERLYISNNRLVAL--------------------NLYGQPIPTLKVLDLSHNHLL-HVERNQP 321 (597)
T ss_dssp SSCCCEEESGGGTTCSSCCEEECTTSCCCEE--------------------ECSSSCCTTCCEEECCSSCCC-CCGGGHH
T ss_pred CCccCCCCHHHhcCccCCCEEECCCCCCCCC--------------------CcccccCCCCcEEECCCCCCC-ccCcccc
Confidence 8888877777888888888888888776522 222334455666666666655 3444455
Q ss_pred cccCCCEEEccCCeeecccchhhcCCccCceeecCCCccc
Q 039967 374 KLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLK 413 (445)
Q Consensus 374 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 413 (445)
.+++|+.|++++|.+.+. .+..+++|+.|++++|++.
T Consensus 322 ~l~~L~~L~L~~N~l~~~---~~~~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 322 QFDRLENLYLDHNSIVTL---KLSTHHTLKNLTLSHNDWD 358 (597)
T ss_dssp HHTTCSEEECCSSCCCCC---CCCTTCCCSEEECCSSCEE
T ss_pred cCCCCCEEECCCCCCCCc---ChhhcCCCCEEEeeCCCCC
Confidence 556666666666655422 2444556666666666554
No 41
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=3.9e-29 Score=228.65 Aligned_cols=288 Identities=20% Similarity=0.253 Sum_probs=203.3
Q ss_pred CCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcCEEeCCCccccccccccccCCCCCcEEEcc
Q 039967 118 SLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLF 197 (445)
Q Consensus 118 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 197 (445)
.++.++++++.++ .+|..+. +++++|++++|.+....+..|.++++|++|++++|.+....|..+..+++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 5677777777766 4444442 577777777777765555667777777777777777776666677777777777777
Q ss_pred CCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCccccc--cChhhhcccccccEEecccCccCC
Q 039967 198 NNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYS--FVPEEIRYLTSLSELELCTNHLSG 275 (445)
Q Consensus 198 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~ 275 (445)
+|.+. ..|..+. ++|++|++++|.+.......+..+++|+.|++++|.+.. ..+..+..+ +|++|++++|.+..
T Consensus 111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 111 KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG 186 (332)
T ss_dssp SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred CCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence 77776 3343333 677788887777765555567777788888888777643 344555555 78888888887764
Q ss_pred CccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCccccccccCCCcceEEcccCccccCCCccccCCCCCc
Q 039967 276 VIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQ 355 (445)
Q Consensus 276 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 355 (445)
. +..+. ++|++|++++|.+.+..+..+..+++|+.|++++|.+. ...+..+..+++|+
T Consensus 187 l-~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~-------------------~~~~~~~~~l~~L~ 244 (332)
T 2ft3_A 187 I-PKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR-------------------MIENGSLSFLPTLR 244 (332)
T ss_dssp C-CSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCC-------------------CCCTTGGGGCTTCC
T ss_pred c-Ccccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCC-------------------cCChhHhhCCCCCC
Confidence 3 22222 67888888888887666667777777777777776554 33444677788888
Q ss_pred EEECCCCccccccchhhccccCCCEEEccCCeeecccchhhcC------CccCceeecCCCccc--cccCccccCCCCcc
Q 039967 356 VLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGS------LIELQYLDLSTNKLK--SSIPKSIGNLLRLC 427 (445)
Q Consensus 356 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~------~~~L~~L~l~~~~~~--~~~~~~~~~~~~L~ 427 (445)
+|++++|.+. .+|..+..+++|+.|++++|++.+..+..+.. .++|+.|++++|++. ...+.+|..+++|+
T Consensus 245 ~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~ 323 (332)
T 2ft3_A 245 ELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRL 323 (332)
T ss_dssp EEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCST
T ss_pred EEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhh
Confidence 8888888887 66777888888888888888887555555544 357889999999876 45677888899999
Q ss_pred EEeCCCCc
Q 039967 428 YLDLSNNQ 435 (445)
Q Consensus 428 ~l~l~~~~ 435 (445)
.+++++|+
T Consensus 324 ~l~l~~n~ 331 (332)
T 2ft3_A 324 AIQFGNYK 331 (332)
T ss_dssp TEEC----
T ss_pred hhhccccc
Confidence 99998875
No 42
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=4.9e-29 Score=227.89 Aligned_cols=288 Identities=22% Similarity=0.274 Sum_probs=159.0
Q ss_pred CcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcCEEeCCCccccccccccccCCCCCcEEEccC
Q 039967 119 LSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFN 198 (445)
Q Consensus 119 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 198 (445)
++.++++++.++ .+|..+. ++++.|++++|.+....+..|.++++|++|++++|.+....|..+..+++|++|++++
T Consensus 33 l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 33 LRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp TTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 444444444443 2232222 3444555555544433333444455555555555554444344445555555555555
Q ss_pred CccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCccccc--cChhhhcccccccEEecccCccCCC
Q 039967 199 NSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYS--FVPEEIRYLTSLSELELCTNHLSGV 276 (445)
Q Consensus 199 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~ 276 (445)
|.+. ..+..+. ++|++|++++|.+.......+..+++|+.|++++|.+.. ..+..+..+++|++|++++|.+...
T Consensus 110 n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l 186 (330)
T 1xku_A 110 NQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI 186 (330)
T ss_dssp SCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC
T ss_pred CcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccC
Confidence 5444 2222221 455555555555543333445555555666655555432 3344555566666666666665532
Q ss_pred ccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCccccccccCCCcceEEcccCccccCCCccccCCCCCcE
Q 039967 277 IPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQV 356 (445)
Q Consensus 277 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 356 (445)
+..+. ++|++|++++|.+.+..+..+..+++|+.|++++|.+. +..+..+..+++|++
T Consensus 187 -~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-------------------~~~~~~~~~l~~L~~ 244 (330)
T 1xku_A 187 -PQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS-------------------AVDNGSLANTPHLRE 244 (330)
T ss_dssp -CSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCC-------------------EECTTTGGGSTTCCE
T ss_pred -Ccccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCc-------------------eeChhhccCCCCCCE
Confidence 22221 56677777777666555556666666666666655443 333345566677777
Q ss_pred EECCCCccccccchhhccccCCCEEEccCCeeecccchhhcC------CccCceeecCCCcccc--ccCccccCCCCccE
Q 039967 357 LDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGS------LIELQYLDLSTNKLKS--SIPKSIGNLLRLCY 428 (445)
Q Consensus 357 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~------~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~ 428 (445)
|++++|.+. ..|..+..+++|+.|++++|++.+..+..|.. .++++.|++++|++.. ..+..|..+..++.
T Consensus 245 L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~ 323 (330)
T 1xku_A 245 LHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAA 323 (330)
T ss_dssp EECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGG
T ss_pred EECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeE
Confidence 777777776 56666777777777777777776544444433 3677888888887753 44567788888888
Q ss_pred EeCCCCc
Q 039967 429 LDLSNNQ 435 (445)
Q Consensus 429 l~l~~~~ 435 (445)
+++++|+
T Consensus 324 l~L~~N~ 330 (330)
T 1xku_A 324 VQLGNYK 330 (330)
T ss_dssp EEC----
T ss_pred EEecccC
Confidence 8888874
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=7.4e-29 Score=226.69 Aligned_cols=268 Identities=23% Similarity=0.269 Sum_probs=145.3
Q ss_pred CCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcCEEeCCCccccccccccccCCCCCcEEEcc
Q 039967 118 SLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLF 197 (445)
Q Consensus 118 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 197 (445)
.+++|++++|.++...+..|..+++|++|++++|.+....|..|..+++|++|++++|.+. ..|..+. ++|++|+++
T Consensus 53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~ 129 (330)
T 1xku_A 53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVH 129 (330)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECC
T ss_pred CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECC
Confidence 4444555544444333334444455555555554444333444444555555555554443 2222221 445555555
Q ss_pred CCccCCCCCccccCCCCcCEEEccCccccC--CCCccccCCCcccEEEeeCccccccChhhhcccccccEEecccCccCC
Q 039967 198 NNSLSGSLPPILGNLKSLSALGLHINQLSG--VIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSG 275 (445)
Q Consensus 198 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 275 (445)
+|.+....+..+..+++|+++++++|.+.. ..+..+..+++|++|++++|.+..... .+ .++|++|++++|.+..
T Consensus 130 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~-~~--~~~L~~L~l~~n~l~~ 206 (330)
T 1xku_A 130 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ-GL--PPSLTELHLDGNKITK 206 (330)
T ss_dssp SSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCS-SC--CTTCSEEECTTSCCCE
T ss_pred CCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCc-cc--cccCCEEECCCCcCCc
Confidence 555443333344445555555555554432 233345555566666666655554322 11 1566666676666665
Q ss_pred CccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCccccccccCCCcceEEcccCccccCCCccccCCCCCc
Q 039967 276 VIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQ 355 (445)
Q Consensus 276 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 355 (445)
..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+. ..+..+..+++|+
T Consensus 207 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~--------------------~lp~~l~~l~~L~ 266 (330)
T 1xku_A 207 VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV--------------------KVPGGLADHKYIQ 266 (330)
T ss_dssp ECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS--------------------SCCTTTTTCSSCC
T ss_pred cCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc--------------------cCChhhccCCCcC
Confidence 55556666677777777777666555555666666666666666543 3444566667777
Q ss_pred EEECCCCccccccchhhcc------ccCCCEEEccCCeeec--ccchhhcCCccCceeecCCCc
Q 039967 356 VLDLSSNNIVGEIPVQLGK------LFSLNKLILNLNQLSG--GMPLELGSLIELQYLDLSTNK 411 (445)
Q Consensus 356 ~L~l~~~~~~~~~~~~~~~------~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~ 411 (445)
+|++++|.+++..+..|.. .+.++.+++.+|++.. ..|..+..+++++.+++++|+
T Consensus 267 ~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 267 VVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp EEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred EEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 7777777776555444432 3667777777777642 345667777788888887764
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=5.1e-29 Score=227.88 Aligned_cols=268 Identities=22% Similarity=0.265 Sum_probs=186.0
Q ss_pred CCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcCEEeCCCccccccccccccCCCCCcEEEc
Q 039967 117 NSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSL 196 (445)
Q Consensus 117 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 196 (445)
+++++|++++|.++...+..|..+++|++|++++|.+....+..|.++++|++|++++|.+. ..|..+. ++|++|++
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l 130 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRI 130 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEEC
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEEC
Confidence 46677777777766555556777777777777777766555666777777777777777665 3444333 67777777
Q ss_pred cCCccCCCCCccccCCCCcCEEEccCccccC--CCCccccCCCcccEEEeeCccccccChhhhcccccccEEecccCccC
Q 039967 197 FNNSLSGSLPPILGNLKSLSALGLHINQLSG--VIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLS 274 (445)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 274 (445)
++|.+....+..+..+++|+++++++|.+.. ..+..+..+ +|+.|++++|.+..... .+ .++|++|++++|.+.
T Consensus 131 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~-~~--~~~L~~L~l~~n~i~ 206 (332)
T 2ft3_A 131 HDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPK-DL--PETLNELHLDHNKIQ 206 (332)
T ss_dssp CSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCS-SS--CSSCSCCBCCSSCCC
T ss_pred CCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCc-cc--cCCCCEEECCCCcCC
Confidence 7777765555556777777777777776642 334455555 77788888877766332 22 267888888888887
Q ss_pred CCccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCccccccccCCCcceEEcccCccccCCCccccCCCCC
Q 039967 275 GVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKL 354 (445)
Q Consensus 275 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 354 (445)
...+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+. ..|..+..+++|
T Consensus 207 ~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~--------------------~lp~~l~~l~~L 266 (332)
T 2ft3_A 207 AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS--------------------RVPAGLPDLKLL 266 (332)
T ss_dssp CCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC--------------------BCCTTGGGCTTC
T ss_pred ccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe--------------------ecChhhhcCccC
Confidence 666677788888888888888888666667777778887777777654 445556777888
Q ss_pred cEEECCCCccccccchhhcc------ccCCCEEEccCCeee--cccchhhcCCccCceeecCCCc
Q 039967 355 QVLDLSSNNIVGEIPVQLGK------LFSLNKLILNLNQLS--GGMPLELGSLIELQYLDLSTNK 411 (445)
Q Consensus 355 ~~L~l~~~~~~~~~~~~~~~------~~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~ 411 (445)
++|++++|.+++..+..|.. .++|+.|++.+|++. +..+..+..+++|+.+++++|+
T Consensus 267 ~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 267 QVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 88888888887665555543 367888888888875 4566778888888888888875
No 45
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=1.3e-33 Score=270.85 Aligned_cols=303 Identities=18% Similarity=0.150 Sum_probs=161.2
Q ss_pred CCcEEEccCCcccC----CCCccccCCCCCceEEeccCccccccCccc-----cCCCCcCEEeCCCccccccc----ccc
Q 039967 118 SLSTMDLSQNQFSG----SIPLSLGNLSNLDKLYLYSNSFSGSIPSII-----GNLKSLLQLDLSENQLIGSI----PLS 184 (445)
Q Consensus 118 ~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-----~~l~~L~~L~l~~~~~~~~~----~~~ 184 (445)
+|++|++++|.++. .++..+..+++|++|++++|.+....+..+ ...++|++|++++|.+.... +..
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence 56677777666653 234556666666666666666542222211 12345666666666654322 333
Q ss_pred ccCCCCCcEEEccCCccCCCCCcccc-----CCCCcCEEEccCccccCC----CCccccCCCcccEEEeeCccccccChh
Q 039967 185 FGNLSSLTLMSLFNNSLSGSLPPILG-----NLKSLSALGLHINQLSGV----IPSSIGNLSSLRALYLYNNGLYSFVPE 255 (445)
Q Consensus 185 l~~l~~L~~L~l~~~~~~~~~~~~~~-----~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~ 255 (445)
+..+++|++|++++|.+.......+. ..++|++|++++|.+... .+..+..+++|++|++++|.+......
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 245 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA 245 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence 44455666666666554422111111 133555555555544321 122233344455555554443321100
Q ss_pred hhcccccccEEecccCccCCCccccccccCCccEEEcCCCcccCC----CCccccccCccceeeccCcccccccc-----
Q 039967 256 EIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGP----IPKSFKNLTSVERVLLNQNNLSGKVN----- 326 (445)
Q Consensus 256 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~----- 326 (445)
.+. ......+++|++|++++|.+.+. ++..+..+++|+.|++++|.+.+...
T Consensus 246 ~l~-------------------~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~ 306 (461)
T 1z7x_W 246 ELC-------------------PGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCE 306 (461)
T ss_dssp HHH-------------------HHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHH
T ss_pred HHH-------------------HHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHH
Confidence 000 00111234455555555544422 23333444555555555554432111
Q ss_pred -----CCCcceEEcccCccccC----CCccccCCCCCcEEECCCCccccccchhhcc-----ccCCCEEEccCCeeec--
Q 039967 327 -----VPKLGTFIISVNNISES----IPPEIGDSPKLQVLDLSSNNIVGEIPVQLGK-----LFSLNKLILNLNQLSG-- 390 (445)
Q Consensus 327 -----~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~L~l~~~~~~~-- 390 (445)
.++|+.|++++|.++.. .+..+..+++|++|++++|.+.+..+..+.. .++|++|++++|++.+
T Consensus 307 ~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~ 386 (461)
T 1z7x_W 307 TLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSS 386 (461)
T ss_dssp HHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHH
T ss_pred HhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhh
Confidence 24566666666665543 2344556788888888888877655544432 6788888888888875
Q ss_pred --ccchhhcCCccCceeecCCCccccccCcccc-----CCCCccEEeCCCCccccc
Q 039967 391 --GMPLELGSLIELQYLDLSTNKLKSSIPKSIG-----NLLRLCYLDLSNNQFGHK 439 (445)
Q Consensus 391 --~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~l~l~~~~~~~~ 439 (445)
.++..+..+++|++|++++|++.......+. ...+|++|++.++.+...
T Consensus 387 ~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~ 442 (461)
T 1z7x_W 387 CSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEE 442 (461)
T ss_dssp HHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHH
T ss_pred HHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHH
Confidence 5566777788888888888888765443332 234688888877776643
No 46
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=6.3e-32 Score=259.04 Aligned_cols=346 Identities=18% Similarity=0.167 Sum_probs=228.8
Q ss_pred ccceEEecCCcCCCCccc-cccCCCCCcEEEccCCcccCC----CCccccCCCCCceEEeccCccccccCccc-cCCC--
Q 039967 94 NLANFYLNNNSLFNSIPL-VLGNLNSLSTMDLSQNQFSGS----IPLSLGNLSNLDKLYLYSNSFSGSIPSII-GNLK-- 165 (445)
Q Consensus 94 ~L~~l~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~l~-- 165 (445)
++++|+++++.+...... .+..+++|++|++++|.++.. ++..+..+++|++|++++|.+....+..+ ..++
T Consensus 4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~ 83 (461)
T 1z7x_W 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 83 (461)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhC
Confidence 344444444443322222 245556666666666665522 23445556666666666666543222211 1223
Q ss_pred --CcCEEeCCCccccc----cccccccCCCCCcEEEccCCccCCCCCcc-----ccCCCCcCEEEccCccccCCC----C
Q 039967 166 --SLLQLDLSENQLIG----SIPLSFGNLSSLTLMSLFNNSLSGSLPPI-----LGNLKSLSALGLHINQLSGVI----P 230 (445)
Q Consensus 166 --~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-----~~~l~~L~~L~l~~~~~~~~~----~ 230 (445)
+|++|++++|.+.. ..+..+..+++|++|++++|.+....+.. ....++|++|++++|.+.... .
T Consensus 84 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~ 163 (461)
T 1z7x_W 84 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA 163 (461)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred CCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHH
Confidence 56777777666553 23555666677777777766654322211 112456777777777665432 2
Q ss_pred ccccCCCcccEEEeeCccccccChhhhc-----ccccccEEecccCccCCC----ccccccccCCccEEEcCCCcccCCC
Q 039967 231 SSIGNLSSLRALYLYNNGLYSFVPEEIR-----YLTSLSELELCTNHLSGV----IPHSIGNLTGLLLLNMCENHLSGPI 301 (445)
Q Consensus 231 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~ 301 (445)
..+..+++|++|++++|.+.......+. ..++|++|++++|.+... .+..+..+++|++|++++|.+.+..
T Consensus 164 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 243 (461)
T 1z7x_W 164 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 243 (461)
T ss_dssp HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred HHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHH
Confidence 3455567888888888876553333332 245899999999988754 2455667899999999999876432
Q ss_pred -----CccccccCccceeeccCcccccc-----c----cCCCcceEEcccCccccCCCcccc-----CCCCCcEEECCCC
Q 039967 302 -----PKSFKNLTSVERVLLNQNNLSGK-----V----NVPKLGTFIISVNNISESIPPEIG-----DSPKLQVLDLSSN 362 (445)
Q Consensus 302 -----~~~~~~~~~L~~L~l~~~~~~~~-----~----~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~ 362 (445)
+..+..+++|+.|++++|.+.+. . .+++|+.|++++|.+.+..+..+. ..++|++|++++|
T Consensus 244 ~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n 323 (461)
T 1z7x_W 244 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC 323 (461)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCC
Confidence 22333588999999999988763 2 278999999999988643332222 3479999999999
Q ss_pred ccccc----cchhhccccCCCEEEccCCeeecccchhhcC-----CccCceeecCCCcccc----ccCccccCCCCccEE
Q 039967 363 NIVGE----IPVQLGKLFSLNKLILNLNQLSGGMPLELGS-----LIELQYLDLSTNKLKS----SIPKSIGNLLRLCYL 429 (445)
Q Consensus 363 ~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~l 429 (445)
.+++. ++..+..+++|++|++++|++.+..+..+.. .++|+.|++++|.+++ ..+..+..+++|++|
T Consensus 324 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L 403 (461)
T 1z7x_W 324 SFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLREL 403 (461)
T ss_dssp CCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEE
T ss_pred CCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEE
Confidence 99865 4566778899999999999987554444432 6799999999999986 556778889999999
Q ss_pred eCCCCccccc
Q 039967 430 DLSNNQFGHK 439 (445)
Q Consensus 430 ~l~~~~~~~~ 439 (445)
++++|++++.
T Consensus 404 ~l~~N~i~~~ 413 (461)
T 1z7x_W 404 DLSNNCLGDA 413 (461)
T ss_dssp ECCSSSCCHH
T ss_pred ECCCCCCCHH
Confidence 9999998864
No 47
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.96 E-value=6.9e-29 Score=224.54 Aligned_cols=249 Identities=31% Similarity=0.475 Sum_probs=124.5
Q ss_pred CCceEEeccCcccc--ccCccccCCCCcCEEeCCC-ccccccccccccCCCCCcEEEccCCccCCCCCccccCCCCcCEE
Q 039967 142 NLDKLYLYSNSFSG--SIPSIIGNLKSLLQLDLSE-NQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSAL 218 (445)
Q Consensus 142 ~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 218 (445)
+++.|++.++.+.. ..|..+.++++|++|++++ +.+.+..|..+..+++|++|++++|.+....|..+..+++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 45555555555543 3444455555555555552 44444444444445555555555444443444444444444444
Q ss_pred EccCccccCCCCccccCCCcccEEEeeCccccccChhhhcccccccEEecccCccCCCccccccccC-CccEEEcCCCcc
Q 039967 219 GLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLT-GLLLLNMCENHL 297 (445)
Q Consensus 219 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~ 297 (445)
++++|.+....+..+. .+++|++|++++|.+....+..+..++ .|++|++++|.+
T Consensus 131 ~Ls~N~l~~~~p~~~~------------------------~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l 186 (313)
T 1ogq_A 131 DFSYNALSGTLPPSIS------------------------SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186 (313)
T ss_dssp ECCSSEEESCCCGGGG------------------------GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE
T ss_pred eCCCCccCCcCChHHh------------------------cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCee
Confidence 4444444433333344 444444444444444333333333333 445555555544
Q ss_pred cCCCCccccccCccceeeccCccccccccCCCcceEEcccCccccCCCccccCCCCCcEEECCCCccccccchhhccccC
Q 039967 298 SGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFS 377 (445)
Q Consensus 298 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 377 (445)
.+..+..+..+. |+.|++++|.+ .+..+..+..+++|++|++++|.+.+..+. +..+++
T Consensus 187 ~~~~~~~~~~l~-L~~L~Ls~N~l-------------------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~ 245 (313)
T 1ogq_A 187 TGKIPPTFANLN-LAFVDLSRNML-------------------EGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKN 245 (313)
T ss_dssp EEECCGGGGGCC-CSEEECCSSEE-------------------EECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTT
T ss_pred eccCChHHhCCc-ccEEECcCCcc-------------------cCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCC
Confidence 444444444333 44444444333 233444455556666666666665543333 455566
Q ss_pred CCEEEccCCeeecccchhhcCCccCceeecCCCccccccCccccCCCCccEEeCCCCcc
Q 039967 378 LNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQF 436 (445)
Q Consensus 378 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~ 436 (445)
|++|++++|++.+..|..+..+++|+.|++++|++++..|.. ..+++|+.+++.+|++
T Consensus 246 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~ 303 (313)
T 1ogq_A 246 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKC 303 (313)
T ss_dssp CCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSE
T ss_pred CCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCC
Confidence 666666666665555666666666666666666666554443 5566666666666653
No 48
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.96 E-value=1.5e-28 Score=222.35 Aligned_cols=251 Identities=30% Similarity=0.482 Sum_probs=199.8
Q ss_pred CCCcEEEccCCcccC--CCCccccCCCCCceEEecc-CccccccCccccCCCCcCEEeCCCccccccccccccCCCCCcE
Q 039967 117 NSLSTMDLSQNQFSG--SIPLSLGNLSNLDKLYLYS-NSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTL 193 (445)
Q Consensus 117 ~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 193 (445)
.+++.|+++++.++. ..|..+..+++|++|++++ +.+....|..+.++++|++|++++|.+....|..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 579999999999987 7888999999999999995 8888788999999999999999999998788889999999999
Q ss_pred EEccCCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCC-cccEEEeeCccccccChhhhcccccccEEecccCc
Q 039967 194 MSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLS-SLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNH 272 (445)
Q Consensus 194 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 272 (445)
|++++|.+....|..+..+++|++|++++|.+....+..+..++ +|+.|++++|.+....+..+..++
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~----------- 198 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN----------- 198 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-----------
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-----------
Confidence 99999999988899999999999999999988766666777666 777777777766554444444433
Q ss_pred cCCCccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCccccccccCCCcceEEcccCccccCCCccccCCC
Q 039967 273 LSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSP 352 (445)
Q Consensus 273 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 352 (445)
|++|++++|.+.+..+..+..+++|+.|++++|.+. ... ..+..++
T Consensus 199 --------------L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-------------------~~~-~~~~~l~ 244 (313)
T 1ogq_A 199 --------------LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA-------------------FDL-GKVGLSK 244 (313)
T ss_dssp --------------CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEEC-------------------CBG-GGCCCCT
T ss_pred --------------ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCcee-------------------eec-CcccccC
Confidence 555555555555445555555555666655555443 111 1245568
Q ss_pred CCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCccc
Q 039967 353 KLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLK 413 (445)
Q Consensus 353 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 413 (445)
+|++|++++|.+++..|..+..+++|+.|++++|++.+.+|.. ..+++|+.|++++|+..
T Consensus 245 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCL 304 (313)
T ss_dssp TCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEE
T ss_pred CCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCc
Confidence 8999999999988888888999999999999999998777765 78899999999999844
No 49
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=2.1e-30 Score=256.39 Aligned_cols=380 Identities=12% Similarity=0.036 Sum_probs=225.5
Q ss_pred CCCCCcEEEecCcccccCCCccccc-CCC-ccEEEecCcccc------------cccceEEecCCcCCCC----cccccc
Q 039967 53 HLNQLRILYFDVNQLHGSIPLEIGQ-LSL-INVLALCHNYFV------------CNLANFYLNNNSLFNS----IPLVLG 114 (445)
Q Consensus 53 ~~~~L~~L~l~~~~~~~~~~~~~~~-l~~-L~~l~l~~~~~~------------~~L~~l~l~~~~~~~~----~~~~~~ 114 (445)
.+++|++|+++++.+++..+..+.. ++. |+++++.+|... ++|++|++++|.+.+. ++....
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 4556666666665554333333433 222 555555554311 4566666666655433 233445
Q ss_pred CCCCCcEEEccCCcccC----CCCccccCCCCCceEEeccCccccccCccccCCCCcCEEeCCCcccc---ccccccccC
Q 039967 115 NLNSLSTMDLSQNQFSG----SIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLI---GSIPLSFGN 187 (445)
Q Consensus 115 ~~~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~---~~~~~~l~~ 187 (445)
.+++|++|+++++.++. ..+..+..+++|++|++.+|.+. ..+..+..+++|+.|++++.... ...+..+..
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 268 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL-ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF 268 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG-GGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH-HHHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence 66777888887777652 22333456777888888777766 35566677777887777643211 122344566
Q ss_pred CCCCcEEEccCCccCCCCCccccCCCCcCEEEccCccccCCCC-ccccCCCcccEEEeeCccccccChhhhcccccccEE
Q 039967 188 LSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIP-SSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSEL 266 (445)
Q Consensus 188 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 266 (445)
+++|+.+.+.++... ..+..+..+++|++|++++|.+..... ..+..+++|+.|++.++-.....+.....+++|++|
T Consensus 269 ~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L 347 (592)
T 3ogk_B 269 PRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRL 347 (592)
T ss_dssp CTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEE
T ss_pred cccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEE
Confidence 777777777765333 455566667788888888777532222 234667788888877332222233344566778888
Q ss_pred eccc----------C-ccCCCcc-ccccccCCccEEEcCCCcccCCCCccccc-cCccceeecc----Ccccccc-----
Q 039967 267 ELCT----------N-HLSGVIP-HSIGNLTGLLLLNMCENHLSGPIPKSFKN-LTSVERVLLN----QNNLSGK----- 324 (445)
Q Consensus 267 ~l~~----------~-~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~----~~~~~~~----- 324 (445)
++.+ + .+..... .....+++|++|++..+.+.+.....+.. +++|+.|++. .+.+++.
T Consensus 348 ~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~ 427 (592)
T 3ogk_B 348 RIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNG 427 (592)
T ss_dssp EEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHH
T ss_pred EeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHH
Confidence 8873 3 3332211 12344677888888666666544444443 7778888775 3344431
Q ss_pred -----ccCCCcceEEcccCc--cccCCCccc-cCCCCCcEEECCCCccccc-cchhhccccCCCEEEccCCeeecc-cch
Q 039967 325 -----VNVPKLGTFIISVNN--ISESIPPEI-GDSPKLQVLDLSSNNIVGE-IPVQLGKLFSLNKLILNLNQLSGG-MPL 394 (445)
Q Consensus 325 -----~~~~~L~~L~l~~~~--~~~~~~~~~-~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~-~~~ 394 (445)
..+++|+.|++++|. +++.....+ ..+++|++|++++|.+++. .+..+..+++|+.|++++|.+.+. .+.
T Consensus 428 ~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 507 (592)
T 3ogk_B 428 VRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAA 507 (592)
T ss_dssp HHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHH
T ss_pred HHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHH
Confidence 227778888886543 333222222 3467888888888887753 344456788888888888886533 233
Q ss_pred hhcCCccCceeecCCCccccccCccc-cCCCCccEEeCCCC
Q 039967 395 ELGSLIELQYLDLSTNKLKSSIPKSI-GNLLRLCYLDLSNN 434 (445)
Q Consensus 395 ~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~l~l~~~ 434 (445)
....+++|+.|++++|+++......+ ..+|.+....+..+
T Consensus 508 ~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 508 AVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp HHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred HHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 34567888888888888776655555 35676665555443
No 50
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=7.1e-29 Score=245.45 Aligned_cols=389 Identities=15% Similarity=0.103 Sum_probs=276.7
Q ss_pred ccccCCCCCcEEEecCcccc---cCCCccc------------ccCCCccEEEecCcccc-----------cc-cceEEec
Q 039967 49 LEIGHLNQLRILYFDVNQLH---GSIPLEI------------GQLSLINVLALCHNYFV-----------CN-LANFYLN 101 (445)
Q Consensus 49 ~~l~~~~~L~~L~l~~~~~~---~~~~~~~------------~~l~~L~~l~l~~~~~~-----------~~-L~~l~l~ 101 (445)
..+..+++|+.|+++++... +..|... ..++.|++++++++.+. ++ |++|+++
T Consensus 67 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~ 146 (592)
T 3ogk_B 67 RLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLD 146 (592)
T ss_dssp HHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEE
T ss_pred HHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECc
Confidence 34456777888888664321 1122222 27899999999988653 24 9999999
Q ss_pred CCcCCC--CccccccCCCCCcEEEccCCcccCC----CCccccCCCCCceEEeccCccc----cccCccccCCCCcCEEe
Q 039967 102 NNSLFN--SIPLVLGNLNSLSTMDLSQNQFSGS----IPLSLGNLSNLDKLYLYSNSFS----GSIPSIIGNLKSLLQLD 171 (445)
Q Consensus 102 ~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~----~~~~~~~~~l~~L~~L~ 171 (445)
+|.... .++.....+++|++|++++|.+++. ++..+..+++|++|++.++.+. ...+..+.++++|++|+
T Consensus 147 ~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~ 226 (592)
T 3ogk_B 147 KCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVK 226 (592)
T ss_dssp SCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEE
T ss_pred CCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEe
Confidence 886221 2223345789999999999988654 2234567899999999998875 23344566789999999
Q ss_pred CCCccccccccccccCCCCCcEEEccCCccC---CCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCcc
Q 039967 172 LSENQLIGSIPLSFGNLSSLTLMSLFNNSLS---GSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNG 248 (445)
Q Consensus 172 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~---~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 248 (445)
+++|.+.. .+..+..+++|+.|.+...... ......+..+++|+.+++..+... ..+..+..+++|++|++++|.
T Consensus 227 L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~ 304 (592)
T 3ogk_B 227 VGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYAL 304 (592)
T ss_dssp CSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCC
T ss_pred ccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHHhhcCCCcEEecCCCc
Confidence 99998774 6677889999999999754322 223345667789999999875433 445566778999999999998
Q ss_pred ccccCh-hhhcccccccEEecccCccCCCccccccccCCccEEEcCC-----------CcccCC-CCccccccCccceee
Q 039967 249 LYSFVP-EEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCE-----------NHLSGP-IPKSFKNLTSVERVL 315 (445)
Q Consensus 249 ~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~-----------~~~~~~-~~~~~~~~~~L~~L~ 315 (445)
+..... ..+..+++|+.|++.++............+++|++|++++ +.+.+. .......+++|++|+
T Consensus 305 l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~ 384 (592)
T 3ogk_B 305 LETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMA 384 (592)
T ss_dssp CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEE
T ss_pred CCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEE
Confidence 654322 3457889999999984322222233346678999999994 344322 222345689999999
Q ss_pred ccCccccccc------cCCCcceEEcc----cCccccC-----CCccccCCCCCcEEECCCCc--cccccchhhc-cccC
Q 039967 316 LNQNNLSGKV------NVPKLGTFIIS----VNNISES-----IPPEIGDSPKLQVLDLSSNN--IVGEIPVQLG-KLFS 377 (445)
Q Consensus 316 l~~~~~~~~~------~~~~L~~L~l~----~~~~~~~-----~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~-~~~~ 377 (445)
+..+.+.+.. .+++|+.|+++ .+.+++. .+..+..+++|++|+++.|. +++..+..+. .+++
T Consensus 385 l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~ 464 (592)
T 3ogk_B 385 VYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPN 464 (592)
T ss_dssp EEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTT
T ss_pred eecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCcc
Confidence 9877776432 28899999997 3455432 11225568999999998765 5555444444 5899
Q ss_pred CCEEEccCCeeec-ccchhhcCCccCceeecCCCccccccCcc-ccCCCCccEEeCCCCccccc
Q 039967 378 LNKLILNLNQLSG-GMPLELGSLIELQYLDLSTNKLKSSIPKS-IGNLLRLCYLDLSNNQFGHK 439 (445)
Q Consensus 378 L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~l~l~~~~~~~~ 439 (445)
|+.|++++|++.+ ..+..+.++++|++|++++|.+++..... +..+++|++|++++|++++.
T Consensus 465 L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 465 VRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp CCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred ceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 9999999999875 33455678999999999999987554433 46799999999999998865
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=4.9e-27 Score=216.60 Aligned_cols=281 Identities=22% Similarity=0.166 Sum_probs=185.5
Q ss_pred ccCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcCEEeCCCccccccccccccCCCCCc
Q 039967 113 LGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLT 192 (445)
Q Consensus 113 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 192 (445)
...|+.....+.+++.++ .+|..+. ++|++|++++|.+....+..+.++++|++|++++|.+....+..+..+++|+
T Consensus 27 ~~~C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (353)
T 2z80_A 27 SLSCDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE 103 (353)
T ss_dssp CCEECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CCCCCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCC
Confidence 344566667888888887 4565544 5899999999998865565788999999999999988876677788899999
Q ss_pred EEEccCCccCCCCCccccCCCCcCEEEccCccccCCCC-ccccCCCcccEEEeeCcc-ccccChhhhcccccccEEeccc
Q 039967 193 LMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIP-SSIGNLSSLRALYLYNNG-LYSFVPEEIRYLTSLSELELCT 270 (445)
Q Consensus 193 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~ 270 (445)
+|++++|.++...+..+..+++|++|++++|.+..... ..+..+++|++|++++|. +....+..+..+++|++|++++
T Consensus 104 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~ 183 (353)
T 2z80_A 104 HLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDA 183 (353)
T ss_dssp EEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE
T ss_pred EEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCC
Confidence 99999998885555557888999999999888875444 467788888888888873 5555556677777888888887
Q ss_pred CccCCCccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCccccccccCCCcceEEcccCccccCCCccccC
Q 039967 271 NHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGD 350 (445)
Q Consensus 271 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 350 (445)
|.+....+..+..+++|++|++++|.+.......+..+++|+.|++++|.+.+... ........
T Consensus 184 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~----------------~~l~~~~~ 247 (353)
T 2z80_A 184 SDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHF----------------SELSTGET 247 (353)
T ss_dssp TTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCC----------------C------C
T ss_pred CCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccc----------------cccccccc
Confidence 77776556667777777777777776653222233345666666666655432110 00001123
Q ss_pred CCCCcEEECCCCcccc----ccchhhccccCCCEEEccCCeeecccchh-hcCCccCceeecCCCccc
Q 039967 351 SPKLQVLDLSSNNIVG----EIPVQLGKLFSLNKLILNLNQLSGGMPLE-LGSLIELQYLDLSTNKLK 413 (445)
Q Consensus 351 ~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~ 413 (445)
++.++.++++++.+.+ ..|..+..+++|+.|++++|++. .+|.. +..+++|++|++++|++.
T Consensus 248 ~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 248 NSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp CCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCcc
Confidence 3556666666665543 23344455555555555555555 33322 345555555555555554
No 52
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=8.2e-26 Score=204.26 Aligned_cols=241 Identities=24% Similarity=0.275 Sum_probs=107.9
Q ss_pred eEEeccCccccccCccccCCCCcCEEeCCCccccccccccccCCCCCcEEEccCCccCCCC--CccccCCCCcCEEEccC
Q 039967 145 KLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSL--PPILGNLKSLSALGLHI 222 (445)
Q Consensus 145 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~ 222 (445)
.+++.++.++ ..|..+ .++|++|++++|.+....+..+..+++|++|++++|.+.... +..+..+++|++|++++
T Consensus 11 ~l~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 11 EIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp EEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred EEEcCCCCcc-cCCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 3444444444 333322 245555555555554332233455555555555555443111 22233344444444444
Q ss_pred ccccCCCCccccCCCcccEEEeeCccccccChhhhcccccccEEecccCccCCCcc-ccccccCCccEEEcCCCcccCCC
Q 039967 223 NQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIP-HSIGNLTGLLLLNMCENHLSGPI 301 (445)
Q Consensus 223 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~ 301 (445)
|. +.. .+..+..+++|++|++++|.+..... ..+..+++|++|++++|.+.+..
T Consensus 88 n~------------------------i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 142 (306)
T 2z66_A 88 NG------------------------VIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 142 (306)
T ss_dssp CS------------------------EEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECS
T ss_pred Cc------------------------ccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccc
Confidence 44 333 12223344444444444444443222 23444455555555555554444
Q ss_pred CccccccCccceeeccCcccccc------ccCCCcceEEcccCccccCCCccccCCCCCcEEECCCCccccccchhhccc
Q 039967 302 PKSFKNLTSVERVLLNQNNLSGK------VNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKL 375 (445)
Q Consensus 302 ~~~~~~~~~L~~L~l~~~~~~~~------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 375 (445)
+..+..+++|++|++++|.+.+. ..+++|+.|++++|++.+..+..+..+++|++|++++|.+++..+..+..+
T Consensus 143 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 222 (306)
T 2z66_A 143 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL 222 (306)
T ss_dssp TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTC
T ss_pred hhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCc
Confidence 44445555555555555444310 012222222222223323333444455555555555555554444444555
Q ss_pred cCCCEEEccCCeeecccchhhcCCc-cCceeecCCCccc
Q 039967 376 FSLNKLILNLNQLSGGMPLELGSLI-ELQYLDLSTNKLK 413 (445)
Q Consensus 376 ~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~ 413 (445)
++|+.|++++|++.+..+..+..++ +|+.|++++|++.
T Consensus 223 ~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 223 NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp TTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred ccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence 5555555555555544444444442 5555555555554
No 53
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=1.8e-25 Score=212.37 Aligned_cols=248 Identities=25% Similarity=0.263 Sum_probs=134.3
Q ss_pred CceEEeccCccccccCccccCCCCcCEEeCCCccccccccccccCCCCCcEEEccCCccCCCCCccccCCCCcCEEEccC
Q 039967 143 LDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHI 222 (445)
Q Consensus 143 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 222 (445)
.+.+...+..+. .+|..+. ++++.|++++|.+....+..|..+++|+.|++++|.+....+..+..+++|++|++++
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 445555555555 4454432 5667777777766655555666666666666666666654445566666666666666
Q ss_pred ccccCCCCccccCCCcccEEEeeCccccccChhhhcccccccEEecccCccCCCccccccccCCccEEEcCCCcccCCCC
Q 039967 223 NQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIP 302 (445)
Q Consensus 223 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 302 (445)
|.+.......+..+++|++|++++|.+....+..+..+++|++|++++|... ....+
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l-----------------------~~i~~ 178 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRL-----------------------SYISE 178 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTC-----------------------CEECT
T ss_pred CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCc-----------------------ceeCc
Confidence 6655444445555566666666665555544444555555555555543221 11122
Q ss_pred ccccccCccceeeccCccccccccCCCcceEEcccCccccCCCccccCCCCCcEEECCCCccccccchhhccccCCCEEE
Q 039967 303 KSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLI 382 (445)
Q Consensus 303 ~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 382 (445)
..|..+++|+.|++++|.+.. .+ .+..+++|++|++++|.+++..+..|..+++|+.|+
T Consensus 179 ~~~~~l~~L~~L~L~~n~l~~--------------------~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 237 (440)
T 3zyj_A 179 GAFEGLSNLRYLNLAMCNLRE--------------------IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLW 237 (440)
T ss_dssp TTTTTCSSCCEEECTTSCCSS--------------------CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred chhhcccccCeecCCCCcCcc--------------------cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEE
Confidence 233444444444444443321 11 133445555555555555555555555555555555
Q ss_pred ccCCeeecccchhhcCCccCceeecCCCccccccCccccCCCCccEEeCCCCccc
Q 039967 383 LNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQFG 437 (445)
Q Consensus 383 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 437 (445)
+++|++.+..+..|..+++|+.|+|++|+++...+..|..+++|++|++++|+|.
T Consensus 238 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 238 MIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred CCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 5555555444555555556666666666555444455555566666666666553
No 54
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=2.3e-25 Score=212.38 Aligned_cols=248 Identities=26% Similarity=0.250 Sum_probs=145.9
Q ss_pred CceEEeccCccccccCccccCCCCcCEEeCCCccccccccccccCCCCCcEEEccCCccCCCCCccccCCCCcCEEEccC
Q 039967 143 LDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHI 222 (445)
Q Consensus 143 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 222 (445)
...+...+..+. ..|..+. ++++.|++++|.+....+..|..+++|+.|++++|.+....+..+..+++|++|++++
T Consensus 56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 344555555554 3444332 4666666666666655555566666666666666666544445555555666666655
Q ss_pred ccccCCCCccccCCCcccEEEeeCccccccChhhhcccccccEEecccCccCCCccccccccCCccEEEcCCCcccCCCC
Q 039967 223 NQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIP 302 (445)
Q Consensus 223 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 302 (445)
|.+.......+..+++|++|++++|.+....+..+..+++|++|++++|. .+....+
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~-----------------------~l~~i~~ 189 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELK-----------------------KLEYISE 189 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCT-----------------------TCCEECT
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCC-----------------------CccccCh
Confidence 55554444445555555555555555544433344444444444444422 2221222
Q ss_pred ccccccCccceeeccCccccccccCCCcceEEcccCccccCCCccccCCCCCcEEECCCCccccccchhhccccCCCEEE
Q 039967 303 KSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLI 382 (445)
Q Consensus 303 ~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 382 (445)
..|..+++|+.|++++|.+.+ . ..+..+++|++|++++|.+.+..+..|..+++|+.|+
T Consensus 190 ~~~~~l~~L~~L~L~~n~l~~--------------------~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 248 (452)
T 3zyi_A 190 GAFEGLFNLKYLNLGMCNIKD--------------------M-PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLW 248 (452)
T ss_dssp TTTTTCTTCCEEECTTSCCSS--------------------C-CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEE
T ss_pred hhccCCCCCCEEECCCCcccc--------------------c-ccccccccccEEECcCCcCcccCcccccCccCCCEEE
Confidence 334455555555555554431 1 1244566777777777777766677777777777777
Q ss_pred ccCCeeecccchhhcCCccCceeecCCCccccccCccccCCCCccEEeCCCCccc
Q 039967 383 LNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQFG 437 (445)
Q Consensus 383 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 437 (445)
+++|++.+..+..+.++++|+.|+|++|+++...+..|..+++|++|++++|+|.
T Consensus 249 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 249 VMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred eCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 7777777666667777777777777777777666666777777777777777765
No 55
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=5.8e-26 Score=209.41 Aligned_cols=277 Identities=21% Similarity=0.217 Sum_probs=214.5
Q ss_pred eEEecCCcCCCCccccccCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcCEEeCCCcc
Q 039967 97 NFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQ 176 (445)
Q Consensus 97 ~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 176 (445)
..+.+++.+. .+|..+. ++|++|++++|.++...+..+..+++|++|++++|.+....+..|.++++|++|++++|.
T Consensus 35 ~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 111 (353)
T 2z80_A 35 ICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111 (353)
T ss_dssp EEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc
Confidence 3566666655 4454443 589999999999987666689999999999999999987777889999999999999999
Q ss_pred ccccccccccCCCCCcEEEccCCccCCCCC-ccccCCCCcCEEEccCcc-ccCCCCccccCCCcccEEEeeCccccccCh
Q 039967 177 LIGSIPLSFGNLSSLTLMSLFNNSLSGSLP-PILGNLKSLSALGLHINQ-LSGVIPSSIGNLSSLRALYLYNNGLYSFVP 254 (445)
Q Consensus 177 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 254 (445)
+....+..+..+++|++|++++|.+..... ..+..+++|+++++++|. +....+..+..+++|++|++++|.+....+
T Consensus 112 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 191 (353)
T 2z80_A 112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEP 191 (353)
T ss_dssp CSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT
T ss_pred CCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCH
Confidence 886555558899999999999999985444 478889999999999984 555556678899999999999999988778
Q ss_pred hhhcccccccEEecccCccCCCccccccccCCccEEEcCCCcccCCCCcccc---ccCccceeeccCccccccccCCCcc
Q 039967 255 EEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFK---NLTSVERVLLNQNNLSGKVNVPKLG 331 (445)
Q Consensus 255 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~L~ 331 (445)
..+..+++|++|++++|.+.......+..+++|+.|++++|.+.+..+..+. ....++.++++++.+.
T Consensus 192 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~--------- 262 (353)
T 2z80_A 192 KSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKIT--------- 262 (353)
T ss_dssp TTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCC---------
T ss_pred HHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhcccccccccc---------
Confidence 8888999999999999988754444556689999999999988865433322 2334444444444322
Q ss_pred eEEcccCccccCCCccccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecc
Q 039967 332 TFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGG 391 (445)
Q Consensus 332 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 391 (445)
++.+. ..+..+..+++|++|++++|.++...+..+..+++|++|++++|++.+.
T Consensus 263 -----~~~l~-~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 263 -----DESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp -----HHHHH-HHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred -----Ccchh-hhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 11111 2345677889999999999999844444468999999999999998744
No 56
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=1.3e-25 Score=200.77 Aligned_cols=268 Identities=25% Similarity=0.269 Sum_probs=123.9
Q ss_pred cEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcCEEeCCCccccccccccccCCCCCcEEEccCC
Q 039967 120 STMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNN 199 (445)
Q Consensus 120 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 199 (445)
++++.+++.++ .+|..+ .+++++|+++++.+....+..|..+++|++|++++|.+....+..+..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 34555555554 223222 245555555555555444445555556666666555555444455555555555555555
Q ss_pred c-cCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCccccccChhhhcccccccEEecccCccCCCcc
Q 039967 200 S-LSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIP 278 (445)
Q Consensus 200 ~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 278 (445)
. +....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+....+
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 170 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE 170 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence 4 443334444555555555555555443333344444455555555444444333333344444444444444432222
Q ss_pred ccccccCCccEEEcCCCcccCCCCccccccCccceeeccCccccccccCCCcceEEcccCccccCCCccccCCCCCcEEE
Q 039967 279 HSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLD 358 (445)
Q Consensus 279 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 358 (445)
..+..+++|++|++++|.+.+.. +..+..+++|++|+
T Consensus 171 ~~~~~l~~L~~L~l~~n~l~~~~-------------------------------------------~~~~~~l~~L~~L~ 207 (285)
T 1ozn_A 171 RAFRGLHSLDRLLLHQNRVAHVH-------------------------------------------PHAFRDLGRLMTLY 207 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEEC-------------------------------------------TTTTTTCTTCCEEE
T ss_pred HHhcCccccCEEECCCCcccccC-------------------------------------------HhHccCcccccEee
Confidence 23333344444444444333222 33444445555555
Q ss_pred CCCCccccccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCccccccCccccC--CCCccEEeCCCC
Q 039967 359 LSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGN--LLRLCYLDLSNN 434 (445)
Q Consensus 359 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~--~~~L~~l~l~~~ 434 (445)
+++|.+++..+..+..+++|+.|++++|++...-+.. .-...++.+..+.+.+.-..|..+.. +..++..++.+|
T Consensus 208 l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C 284 (285)
T 1ozn_A 208 LFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGC 284 (285)
T ss_dssp CCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC
T ss_pred CCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchHhCCcChhhcCHHHhccC
Confidence 5555555444444555555555555555554221110 11123444444444444444444422 334444444444
No 57
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=1.4e-25 Score=202.77 Aligned_cols=261 Identities=23% Similarity=0.237 Sum_probs=132.6
Q ss_pred CCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccc--cCccccCCCCcCEEeCCCccccccccccccCCCCCcEE
Q 039967 117 NSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGS--IPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLM 194 (445)
Q Consensus 117 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 194 (445)
+++++|+++++.++...+..|..+++|++|++++|.+... .+..+..+++|++|++++|.+. ..+..+..+++|++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEE
Confidence 4566666666666543333455666666666666655421 1333445566666666666554 234445555555555
Q ss_pred EccCCccCCCCC-ccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCccccccChhhhcccccccEEecccCcc
Q 039967 195 SLFNNSLSGSLP-PILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHL 273 (445)
Q Consensus 195 ~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 273 (445)
++++|.+....+ ..+..+++|++|++++|. +....+..+..+++|++|++++|.+
T Consensus 107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~------------------------l~~~~~~~~~~l~~L~~L~l~~n~l 162 (306)
T 2z66_A 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTH------------------------TRVAFNGIFNGLSSLEVLKMAGNSF 162 (306)
T ss_dssp ECTTSEEESSTTTTTTTTCTTCCEEECTTSC------------------------CEECSTTTTTTCTTCCEEECTTCEE
T ss_pred ECCCCcccccccchhhhhccCCCEEECCCCc------------------------CCccchhhcccCcCCCEEECCCCcc
Confidence 555555543222 234444445555544444 4443334444445555555555544
Q ss_pred CC-CccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCccccccccCCCcceEEcccCccccCCCccccCCC
Q 039967 274 SG-VIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSP 352 (445)
Q Consensus 274 ~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 352 (445)
.. ..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+. ...+..+..++
T Consensus 163 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-------------------~~~~~~~~~l~ 223 (306)
T 2z66_A 163 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF-------------------SLDTFPYKCLN 223 (306)
T ss_dssp GGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCS-------------------BCCSGGGTTCT
T ss_pred ccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccC-------------------ccChhhccCcc
Confidence 32 23344555556666666666555444555555555555555555443 22223345556
Q ss_pred CCcEEECCCCccccccchhhcccc-CCCEEEccCCeeecccc--hhhcCCccCceeecCCCccccccCcccc
Q 039967 353 KLQVLDLSSNNIVGEIPVQLGKLF-SLNKLILNLNQLSGGMP--LELGSLIELQYLDLSTNKLKSSIPKSIG 421 (445)
Q Consensus 353 ~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 421 (445)
+|++|++++|.+.+..+..+..++ +|+.|++++|++.+.-. .....+...+.+.+..+.+.-..|..+.
T Consensus 224 ~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~ 295 (306)
T 2z66_A 224 SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQ 295 (306)
T ss_dssp TCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGT
T ss_pred cCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhC
Confidence 666666666666655555555553 66666666666643211 1112233444444444444444444443
No 58
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=1.7e-25 Score=199.99 Aligned_cols=235 Identities=24% Similarity=0.219 Sum_probs=155.4
Q ss_pred CCcEEEccCCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCcc-ccccChhhhcccccccEEec
Q 039967 190 SLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNG-LYSFVPEEIRYLTSLSELEL 268 (445)
Q Consensus 190 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l 268 (445)
++++|+++++.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|. +....+..+..+++|++|++
T Consensus 33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l 112 (285)
T 1ozn_A 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL 112 (285)
T ss_dssp TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEEC
Confidence 44444444444443333334444445555555444443334445555555555555554 44444455556666666666
Q ss_pred ccCccCCCccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCccccccccCCCcceEEcccCccccCCCccc
Q 039967 269 CTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEI 348 (445)
Q Consensus 269 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 348 (445)
++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+. ...+..+
T Consensus 113 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-------------------~~~~~~~ 173 (285)
T 1ozn_A 113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-------------------SVPERAF 173 (285)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-------------------EECTTTT
T ss_pred CCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccc-------------------ccCHHHh
Confidence 666666555556666777777777777777555556777777777777776554 2334457
Q ss_pred cCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCccccccCccccCCCCccE
Q 039967 349 GDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCY 428 (445)
Q Consensus 349 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 428 (445)
..+++|++|++++|.+.+..+..+..+++|+.|++++|++.+..+..+..+++|+.|++++|++...-+ ...-...++.
T Consensus 174 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~-~~~~~~~l~~ 252 (285)
T 1ozn_A 174 RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR-ARPLWAWLQK 252 (285)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG-GHHHHHHHHH
T ss_pred cCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCC-cHHHHHHHHh
Confidence 788999999999999998888999999999999999999997666779999999999999999873211 1111234566
Q ss_pred EeCCCCcccccCCCCC
Q 039967 429 LDLSNNQFGHKILVEL 444 (445)
Q Consensus 429 l~l~~~~~~~~~~~~~ 444 (445)
+....+.+....|+++
T Consensus 253 ~~~~~~~~~c~~p~~l 268 (285)
T 1ozn_A 253 FRGSSSEVPCSLPQRL 268 (285)
T ss_dssp CCSEECCCBEEESGGG
T ss_pred cccccCccccCCchHh
Confidence 6667777777777653
No 59
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=1.5e-28 Score=243.19 Aligned_cols=379 Identities=14% Similarity=0.096 Sum_probs=207.6
Q ss_pred CCCCCcEEEecCcccccCCCcccc-cCCCccEEEecCcccc------------cccceEEecCCcCCCCccc----cccC
Q 039967 53 HLNQLRILYFDVNQLHGSIPLEIG-QLSLINVLALCHNYFV------------CNLANFYLNNNSLFNSIPL----VLGN 115 (445)
Q Consensus 53 ~~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~l~l~~~~~~------------~~L~~l~l~~~~~~~~~~~----~~~~ 115 (445)
.+++|++|+++++.+++..+..+. .+++|+++++.+|... ++|++|++++|.+....+. ....
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 455666666666555443333333 4555555555544211 3455555555554332222 2235
Q ss_pred CCCCcEEEccCCc--ccC-CCCccccCCCCCceEEeccCccccccCccccCCCCcCEEeCCCcc-------ccccccccc
Q 039967 116 LNSLSTMDLSQNQ--FSG-SIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQ-------LIGSIPLSF 185 (445)
Q Consensus 116 ~~~L~~L~l~~~~--~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-------~~~~~~~~l 185 (445)
+++|++|+++++. ++. .....+..+++|++|++.+|......+..+..+++|+.|++..+. +. ..+..+
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~~~l 261 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYS-GLSVAL 261 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHH-HHHHHH
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHH-HHHHHH
Confidence 5677777777765 211 111122345777777777763222345556667777777755443 11 123345
Q ss_pred cCCCCCcEE-EccCCccCCCCCccccCCCCcCEEEccCccccCCCC-ccccCCCcccEEEeeCccccc-cChhhhccccc
Q 039967 186 GNLSSLTLM-SLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIP-SSIGNLSSLRALYLYNNGLYS-FVPEEIRYLTS 262 (445)
Q Consensus 186 ~~l~~L~~L-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~ 262 (445)
..+++|+.+ .+...... ..+..+..+++|++|++++|.+..... ..+..+++|+.|++.+| +.. ........+++
T Consensus 262 ~~~~~L~~Ls~~~~~~~~-~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~ 339 (594)
T 2p1m_B 262 SGCKELRCLSGFWDAVPA-YLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKD 339 (594)
T ss_dssp HTCTTCCEEECCBTCCGG-GGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTT
T ss_pred hcCCCcccccCCcccchh-hHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCC
Confidence 667777777 33332221 233333456788888888777542211 12446778888888877 322 12223335677
Q ss_pred ccEEecccC---------ccCCCccccc-cccCCccEEEcCCCcccCCCCcccc-ccCccceeecc--C----ccccc--
Q 039967 263 LSELELCTN---------HLSGVIPHSI-GNLTGLLLLNMCENHLSGPIPKSFK-NLTSVERVLLN--Q----NNLSG-- 323 (445)
Q Consensus 263 L~~L~l~~~---------~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~--~----~~~~~-- 323 (445)
|++|++.++ .+.......+ ..+++|++|.+..+.+.+.....+. .+++|+.|++. + +.+++
T Consensus 340 L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~ 419 (594)
T 2p1m_B 340 LRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEP 419 (594)
T ss_dssp CCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCC
T ss_pred CCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCc
Confidence 888877432 2222111222 2367778777766666544333333 57778888777 2 23331
Q ss_pred --------cccCCCcceEEcccCccccCCCccccC-CCCCcEEECCCCccccccchhh-ccccCCCEEEccCCeeecccc
Q 039967 324 --------KVNVPKLGTFIISVNNISESIPPEIGD-SPKLQVLDLSSNNIVGEIPVQL-GKLFSLNKLILNLNQLSGGMP 393 (445)
Q Consensus 324 --------~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~ 393 (445)
...+++|+.|++++ .+++.....+.. +++|++|++++|.+++..+..+ ..+++|+.|++++|++.+...
T Consensus 420 ~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~ 498 (594)
T 2p1m_B 420 LDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKAL 498 (594)
T ss_dssp THHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHH
T ss_pred hhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHH
Confidence 12266777777765 444333333333 6778888888777765544444 567778888888887753333
Q ss_pred h-hhcCCccCceeecCCCccccccCccc-cCCCCccEEeCCCCc
Q 039967 394 L-ELGSLIELQYLDLSTNKLKSSIPKSI-GNLLRLCYLDLSNNQ 435 (445)
Q Consensus 394 ~-~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~l~l~~~~ 435 (445)
. ....+++|+.|++++|+++......+ ..++.|+...+..+.
T Consensus 499 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~ 542 (594)
T 2p1m_B 499 LANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERG 542 (594)
T ss_dssp HHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSS
T ss_pred HHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCC
Confidence 2 23446778888888887765444444 456666655555543
No 60
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=3.1e-25 Score=201.70 Aligned_cols=234 Identities=26% Similarity=0.326 Sum_probs=143.7
Q ss_pred CCCcCEEeCCCccccccccccccCCCCCcEEEccCCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEE
Q 039967 164 LKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALY 243 (445)
Q Consensus 164 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 243 (445)
.++++.|+++++.+. .+|..+..+++|++|++++|.+. ..|..+..+++|++|++++|.+. ..+..+..+++|++|+
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 356667777776665 45555666667777777766666 55666666666666666666665 4455566666666666
Q ss_pred eeCccccccChhhhcccccccEEecccCccCCCccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCccccc
Q 039967 244 LYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSG 323 (445)
Q Consensus 244 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 323 (445)
+++|......+..+.. .. ....+..+++|++|++++|.+. .+|..+..+++|+.|++++|.+.
T Consensus 157 L~~n~~~~~~p~~~~~------~~---------~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~- 219 (328)
T 4fcg_A 157 IRACPELTELPEPLAS------TD---------ASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS- 219 (328)
T ss_dssp EEEETTCCCCCSCSEE------EC----------CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-
T ss_pred CCCCCCccccChhHhh------cc---------chhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-
Confidence 6665554433332221 00 0112344666777777777666 55556666666666666666543
Q ss_pred cccCCCcceEEcccCccccCCCccccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCCccCc
Q 039967 324 KVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQ 403 (445)
Q Consensus 324 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 403 (445)
..+..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..+..+++|+
T Consensus 220 -------------------~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~ 280 (328)
T 4fcg_A 220 -------------------ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLE 280 (328)
T ss_dssp -------------------CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCC
T ss_pred -------------------cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCC
Confidence 2333455666666666666666666666666666666666666666666666666666677
Q ss_pred eeecCCCccccccCccccCCCCccEEeCCCCcc
Q 039967 404 YLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQF 436 (445)
Q Consensus 404 ~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~ 436 (445)
.|++++|++.+..|..+.++++|+.+++..+.+
T Consensus 281 ~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 281 KLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp EEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred EEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 777776666666666666666666666665544
No 61
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=5e-25 Score=200.39 Aligned_cols=221 Identities=26% Similarity=0.301 Sum_probs=119.9
Q ss_pred CCCCcEEeccCCcCCCCCCcccCCCCCCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCCccEEE
Q 039967 6 FPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLA 85 (445)
Q Consensus 6 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~ 85 (445)
.+++++|+++++.+..+ +..+.++++|++|++++|.+. ..|..+.++++|++|++++|.+. .+|..+.++++|++++
T Consensus 80 ~~~l~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQF-PDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCSSC-CSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCchhc-ChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 35677777777766644 444666777777777777766 56666667777777777777666 5566666666555554
Q ss_pred ecCcccccccceEEecCCcCCCCccccc---------cCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccc
Q 039967 86 LCHNYFVCNLANFYLNNNSLFNSIPLVL---------GNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGS 156 (445)
Q Consensus 86 l~~~~~~~~L~~l~l~~~~~~~~~~~~~---------~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 156 (445)
+++|. ..+.+|..+ .++++|++|++++|.++ .+|..+..+++|++|++++|.+. .
T Consensus 157 L~~n~--------------~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~ 220 (328)
T 4fcg_A 157 IRACP--------------ELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-A 220 (328)
T ss_dssp EEEET--------------TCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-C
T ss_pred CCCCC--------------CccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-c
Confidence 44432 222333322 23555555555555555 44444555555555555555554 3
Q ss_pred cCccccCCCCcCEEeCCCccccccccccccCCCCCcEEEccCCccCCCCCccccCCCCcCEEEccCccccCCCCccccCC
Q 039967 157 IPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNL 236 (445)
Q Consensus 157 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 236 (445)
.+..+..+++|+.|++++|.+....|..+..+++|+.|++++|.+....|..+..+++|+.|++++|.+....+..+..+
T Consensus 221 l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L 300 (328)
T 4fcg_A 221 LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL 300 (328)
T ss_dssp CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGS
T ss_pred CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhc
Confidence 34445555555555555555444444445555555555555554444444444444555555555544444444444444
Q ss_pred CcccEEEee
Q 039967 237 SSLRALYLY 245 (445)
Q Consensus 237 ~~L~~L~l~ 245 (445)
++|+.+++.
T Consensus 301 ~~L~~l~l~ 309 (328)
T 4fcg_A 301 PANCIILVP 309 (328)
T ss_dssp CTTCEEECC
T ss_pred cCceEEeCC
Confidence 444444444
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=4.5e-24 Score=202.74 Aligned_cols=242 Identities=23% Similarity=0.244 Sum_probs=139.2
Q ss_pred CcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcCEEeCCCccccccccccccCCCCCcEEEccC
Q 039967 119 LSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFN 198 (445)
Q Consensus 119 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 198 (445)
...++..+..++ .+|..+. ++++.|++.+|.+....+..|.++++|+.|++++|.+....+..|..+++|++|++++
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 345555555555 3343333 4566666666666544455566666666666666666555555566666666666666
Q ss_pred CccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCcc-ccccChhhhcccccccEEecccCccCCCc
Q 039967 199 NSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNG-LYSFVPEEIRYLTSLSELELCTNHLSGVI 277 (445)
Q Consensus 199 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 277 (445)
|.++...+..+..+++|++|++++|.+.......+..+++|+.|++++|+ +.......+..+++|++|++++|.+...
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~- 200 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI- 200 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC-
T ss_pred CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc-
Confidence 66665444456666666666666666655545556666666666666633 3333344566666777777777666532
Q ss_pred cccccccCCccEEEcCCCcccCCCCccccccCccceeeccCccccccc-----cCCCcceEEcccCccccCCCccccCCC
Q 039967 278 PHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKV-----NVPKLGTFIISVNNISESIPPEIGDSP 352 (445)
Q Consensus 278 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-----~~~~L~~L~l~~~~~~~~~~~~~~~~~ 352 (445)
+ .+..+++|+.|++++|.+.+..+..|..+++|+.|++++|.+.... .+++|+.|++++|+++...+..+..++
T Consensus 201 ~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 279 (440)
T 3zyj_A 201 P-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLH 279 (440)
T ss_dssp C-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCT
T ss_pred c-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcccc
Confidence 2 3556667777777777776556666667777777766666554221 123333333333344333444445555
Q ss_pred CCcEEECCCCccc
Q 039967 353 KLQVLDLSSNNIV 365 (445)
Q Consensus 353 ~L~~L~l~~~~~~ 365 (445)
+|+.|++++|++.
T Consensus 280 ~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 280 HLERIHLHHNPWN 292 (440)
T ss_dssp TCCEEECCSSCEE
T ss_pred CCCEEEcCCCCcc
Confidence 5555555555544
No 63
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.93 E-value=4.3e-24 Score=203.54 Aligned_cols=230 Identities=20% Similarity=0.218 Sum_probs=146.2
Q ss_pred ccceEEecCCcCCCCccccccCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcCEEeCC
Q 039967 94 NLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLS 173 (445)
Q Consensus 94 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 173 (445)
++++|++++|.+....+..|.++++|++|++++|.++...+..|..+++|++|++++|.+....+..|..+++|++|+++
T Consensus 76 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 155 (452)
T 3zyi_A 76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLR 155 (452)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECC
T ss_pred CccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECC
Confidence 44555555555555555566666666666666666665555666666666666666666664444456666667777776
Q ss_pred CccccccccccccCCCCCcEEEccCC-ccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCcccccc
Q 039967 174 ENQLIGSIPLSFGNLSSLTLMSLFNN-SLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSF 252 (445)
Q Consensus 174 ~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 252 (445)
+|.+....+..+..+++|+.|+++++ .+....+..+..+++|+.|++++|.+... ..+..+++|+.|++++|.+...
T Consensus 156 ~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~ 233 (452)
T 3zyi_A 156 NNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGNHFPEI 233 (452)
T ss_dssp SCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC--CCCTTCTTCCEEECTTSCCSEE
T ss_pred CCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc--ccccccccccEEECcCCcCccc
Confidence 66666444445666666777766663 33323333456666777777776666532 2355666777777777777666
Q ss_pred ChhhhcccccccEEecccCccCCCccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCccccccc
Q 039967 253 VPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKV 325 (445)
Q Consensus 253 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 325 (445)
.+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+...+
T Consensus 234 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC 306 (452)
T 3zyi_A 234 RPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDC 306 (452)
T ss_dssp CGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECST
T ss_pred CcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCC
Confidence 6666667777777777777766555566666777777777777776555556666777777777777665443
No 64
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=4.8e-27 Score=232.45 Aligned_cols=386 Identities=14% Similarity=0.115 Sum_probs=246.4
Q ss_pred cccCCCCCcEEEecCcccccC---C------------CcccccCCCccEEEecCcccc-----------cccceEEecCC
Q 039967 50 EIGHLNQLRILYFDVNQLHGS---I------------PLEIGQLSLINVLALCHNYFV-----------CNLANFYLNNN 103 (445)
Q Consensus 50 ~l~~~~~L~~L~l~~~~~~~~---~------------~~~~~~l~~L~~l~l~~~~~~-----------~~L~~l~l~~~ 103 (445)
.+..+++|+.|+++++..... . +.....++.|++++++++.+. ++|++|++++|
T Consensus 61 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~ 140 (594)
T 2p1m_B 61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC 140 (594)
T ss_dssp HHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred HHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc
Confidence 344566677777766542210 1 111346788888888876543 67888888877
Q ss_pred cCCCC--ccccccCCCCCcEEEccCCcccCCCCccc----cCCCCCceEEeccCc--ccc-ccCccccCCCCcCEEeCCC
Q 039967 104 SLFNS--IPLVLGNLNSLSTMDLSQNQFSGSIPLSL----GNLSNLDKLYLYSNS--FSG-SIPSIIGNLKSLLQLDLSE 174 (445)
Q Consensus 104 ~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~----~~l~~L~~L~l~~~~--~~~-~~~~~~~~l~~L~~L~l~~ 174 (445)
...+. ++.....+++|++|++++|.+++..+..+ ..+++|++|++.++. +.. .....+.++++|++|++++
T Consensus 141 ~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~ 220 (594)
T 2p1m_B 141 EGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNR 220 (594)
T ss_dssp EEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCT
T ss_pred CCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCC
Confidence 32222 33444567888888888887664433333 356688888887775 211 1122234467888888887
Q ss_pred ccccccccccccCCCCCcEEEccCCccC------CCCCccccCCCCcCEE-EccCccccCCCCccccCCCcccEEEeeCc
Q 039967 175 NQLIGSIPLSFGNLSSLTLMSLFNNSLS------GSLPPILGNLKSLSAL-GLHINQLSGVIPSSIGNLSSLRALYLYNN 247 (445)
Q Consensus 175 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~------~~~~~~~~~l~~L~~L-~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 247 (445)
|......+..+..+++|+.|.+..+... ...+..+.++++|+.+ .+...... ..+..+..+++|+.|++++|
T Consensus 221 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~-~l~~~~~~~~~L~~L~L~~~ 299 (594)
T 2p1m_B 221 AVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPA-YLPAVYSVCSRLTTLNLSYA 299 (594)
T ss_dssp TSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGG-GGGGGHHHHTTCCEEECTTC
T ss_pred CCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchh-hHHHHHHhhCCCCEEEccCC
Confidence 7322235556667788888876654321 0112245667777777 33322211 22223335789999999999
Q ss_pred ccccc-ChhhhcccccccEEecccCccCCCcc-ccccccCCccEEEcCCC---------cccCCCCccc-cccCccceee
Q 039967 248 GLYSF-VPEEIRYLTSLSELELCTNHLSGVIP-HSIGNLTGLLLLNMCEN---------HLSGPIPKSF-KNLTSVERVL 315 (445)
Q Consensus 248 ~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~---------~~~~~~~~~~-~~~~~L~~L~ 315 (445)
.+... ....+..+++|+.|++.+| +..... .....+++|+.|++.++ .+.+.....+ ..+++|+.|.
T Consensus 300 ~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~ 378 (594)
T 2p1m_B 300 TVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVL 378 (594)
T ss_dssp CCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEE
T ss_pred CCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHH
Confidence 86542 2223567899999999987 332222 22345789999999442 3332222222 3589999998
Q ss_pred ccCccccccc------cCCCcceEEcc--c----CccccCCC-----ccccCCCCCcEEECCCCccccccchhhcc-ccC
Q 039967 316 LNQNNLSGKV------NVPKLGTFIIS--V----NNISESIP-----PEIGDSPKLQVLDLSSNNIVGEIPVQLGK-LFS 377 (445)
Q Consensus 316 l~~~~~~~~~------~~~~L~~L~l~--~----~~~~~~~~-----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~ 377 (445)
+..+.+.+.. .+++|+.|++. + +.++.... ..+..+++|+.|++++ .+++..+..+.. +++
T Consensus 379 ~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~ 457 (594)
T 2p1m_B 379 YFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKK 457 (594)
T ss_dssp EEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTT
T ss_pred HhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchh
Confidence 8877776432 38999999998 3 34442211 1256789999999987 666555555554 899
Q ss_pred CCEEEccCCeeecccchhh-cCCccCceeecCCCccccccCc-cccCCCCccEEeCCCCcccc
Q 039967 378 LNKLILNLNQLSGGMPLEL-GSLIELQYLDLSTNKLKSSIPK-SIGNLLRLCYLDLSNNQFGH 438 (445)
Q Consensus 378 L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~l~l~~~~~~~ 438 (445)
|+.|++++|++++.....+ .++++|+.|++++|.+++.... ....+++|++|++++|+.+.
T Consensus 458 L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 520 (594)
T 2p1m_B 458 MEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSF 520 (594)
T ss_dssp CCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBH
T ss_pred ccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCH
Confidence 9999999999865544444 6789999999999999765554 34568999999999999864
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=1.2e-25 Score=203.88 Aligned_cols=263 Identities=20% Similarity=0.157 Sum_probs=157.6
Q ss_pred CCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcCEEeCCCccccccccccccCCCCCcEEEcc
Q 039967 118 SLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLF 197 (445)
Q Consensus 118 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 197 (445)
.++..+++.+.+.......+..+++|++|++++|.+....+..+..+++|++|++++|.+....+ +..+++|++|+++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 34555566665554444445566677777777777765555667777777777777777654332 6677777777777
Q ss_pred CCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCccccccChhhhcccccccEEecccCccCCCc
Q 039967 198 NNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVI 277 (445)
Q Consensus 198 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 277 (445)
+|.+... ...++|+++++++|.+..... ..+++|++|++++|.+....+..+..+++|++|++++|.+....
T Consensus 89 ~n~l~~l-----~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 160 (317)
T 3o53_A 89 NNYVQEL-----LVGPSIETLHAANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN 160 (317)
T ss_dssp SSEEEEE-----EECTTCCEEECCSSCCSEEEE---CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE
T ss_pred CCccccc-----cCCCCcCEEECCCCccCCcCc---cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc
Confidence 7766521 123666666666666543221 22345566666665555544444555555555555555554333
Q ss_pred cccc-cccCCccEEEcCCCcccCCCCccccccCccceeeccCccccccccCCCcceEEcccCccccCCCccccCCCCCcE
Q 039967 278 PHSI-GNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQV 356 (445)
Q Consensus 278 ~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 356 (445)
+..+ ..+++|++|++++|.+.+. +. ... +++|+.|++++|++.. .+..+..+++|++
T Consensus 161 ~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~-------------------l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~ 218 (317)
T 3o53_A 161 FAELAASSDTLEHLNLQYNFIYDV-KG-QVV-------------------FAKLKTLDLSSNKLAF-MGPEFQSAAGVTW 218 (317)
T ss_dssp GGGGGGGTTTCCEEECTTSCCCEE-EC-CCC-------------------CTTCCEEECCSSCCCE-ECGGGGGGTTCSE
T ss_pred HHHHhhccCcCCEEECCCCcCccc-cc-ccc-------------------cccCCEEECCCCcCCc-chhhhcccCcccE
Confidence 3333 2345555555555554422 11 112 3444444455555543 3334667788888
Q ss_pred EECCCCccccccchhhccccCCCEEEccCCeee-cccchhhcCCccCceeecCCCccc
Q 039967 357 LDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLS-GGMPLELGSLIELQYLDLSTNKLK 413 (445)
Q Consensus 357 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~ 413 (445)
|++++|.++ .+|..+..+++|+.|++++|++. +..+..+..++.|+.|++++++..
T Consensus 219 L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l 275 (317)
T 3o53_A 219 ISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKL 275 (317)
T ss_dssp EECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred EECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhc
Confidence 888888887 45666777888888888888886 556677778888888888765433
No 66
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=3.6e-23 Score=202.20 Aligned_cols=265 Identities=25% Similarity=0.340 Sum_probs=188.7
Q ss_pred CCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcCEEeCCCccccccccccccCCCCCcEEEc
Q 039967 117 NSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSL 196 (445)
Q Consensus 117 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 196 (445)
..++.|+++++.++ .+|..+. ++|++|++.+|.+. .+|. .+++|++|++++|.+. .+|. .+++|++|++
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~L 108 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSI 108 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEE
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEEC
Confidence 46899999999998 5566554 79999999999887 4555 5789999999999887 3454 6789999999
Q ss_pred cCCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCccccccChhhhcccccccEEecccCccCCC
Q 039967 197 FNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGV 276 (445)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 276 (445)
++|.+.. ++. .+++|+.|++++|.+... +. .+++|++|++++|.+..... .+++|+.|++.+|.+...
T Consensus 109 s~N~l~~-l~~---~l~~L~~L~L~~N~l~~l-p~---~l~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~~l 176 (622)
T 3g06_A 109 FSNPLTH-LPA---LPSGLCKLWIFGNQLTSL-PV---LPPGLQELSVSDNQLASLPA----LPSELCKLWAYNNQLTSL 176 (622)
T ss_dssp CSCCCCC-CCC---CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCC
T ss_pred cCCcCCC-CCC---CCCCcCEEECCCCCCCcC-CC---CCCCCCEEECcCCcCCCcCC----ccCCCCEEECCCCCCCCC
Confidence 9998874 343 568899999999987743 22 24789999999988776422 346788899988888743
Q ss_pred ccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCcccccccc-CCCcceEEcccCccccCCCccccCCCCCc
Q 039967 277 IPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVN-VPKLGTFIISVNNISESIPPEIGDSPKLQ 355 (445)
Q Consensus 277 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 355 (445)
. ..+++|+.|++++|.+.+ ++. ..++|+.|.+++|.+..... +++|+.|++++|+++. .+ ..+++|+
T Consensus 177 ~----~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~-lp---~~l~~L~ 244 (622)
T 3g06_A 177 P----MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-LP---VLPSELK 244 (622)
T ss_dssp C----CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSC-CC---CCCTTCC
T ss_pred c----ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccccCCCCCCCCEEEccCCccCc-CC---CCCCcCc
Confidence 3 456788899999888874 333 24678888888887765433 4567777777776664 22 3446677
Q ss_pred EEECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCccccccCcccc
Q 039967 356 VLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIG 421 (445)
Q Consensus 356 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 421 (445)
.|++++|.++ .+|. .+++|+.|++++|.+. .+|..+..+++|+.|++++|++.+..+..+.
T Consensus 245 ~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~ 305 (622)
T 3g06_A 245 ELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALR 305 (622)
T ss_dssp EEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred EEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHH
Confidence 7777777666 3333 4566777777777766 5566666777777777777776655554443
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.91 E-value=1.5e-25 Score=203.18 Aligned_cols=263 Identities=19% Similarity=0.147 Sum_probs=180.2
Q ss_pred EEeccCccccccCccccCCCCcCEEeCCCccccccccccccCCCCCcEEEccCCccCCCCCccccCCCCcCEEEccCccc
Q 039967 146 LYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQL 225 (445)
Q Consensus 146 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 225 (445)
.++..+.+.......+..+++|++|++++|.+....+..+..+++|++|++++|.+....+ +..+++|++|++++|.+
T Consensus 15 ~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l 92 (317)
T 3o53_A 15 EKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYV 92 (317)
T ss_dssp ESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEE
T ss_pred eeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcc
Confidence 3444444443333445566788888888888776666677788888888888887764332 66777788888777776
Q ss_pred cCCCCccccCCCcccEEEeeCccccccChhhhcccccccEEecccCccCCCccccccccCCccEEEcCCCcccCCCCccc
Q 039967 226 SGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSF 305 (445)
Q Consensus 226 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 305 (445)
.. +...++|++|++++|.+....+. .+++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+
T Consensus 93 ~~-----l~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 164 (317)
T 3o53_A 93 QE-----LLVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164 (317)
T ss_dssp EE-----EEECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGG
T ss_pred cc-----ccCCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHH
Confidence 52 22336777777777776654332 24567777777777665555556666677777777776664444433
Q ss_pred -cccCccceeeccCccccccccCCCcceEEcccCccccCCCccccCCCCCcEEECCCCccccccchhhccccCCCEEEcc
Q 039967 306 -KNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILN 384 (445)
Q Consensus 306 -~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 384 (445)
..+++|+.|++++|.+. .. .....+++|++|++++|.+++. +..+..+++|+.|+++
T Consensus 165 ~~~l~~L~~L~L~~N~l~-------------------~~--~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~ 222 (317)
T 3o53_A 165 AASSDTLEHLNLQYNFIY-------------------DV--KGQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLR 222 (317)
T ss_dssp GGGTTTCCEEECTTSCCC-------------------EE--ECCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECT
T ss_pred hhccCcCCEEECCCCcCc-------------------cc--ccccccccCCEEECCCCcCCcc-hhhhcccCcccEEECc
Confidence 24556666666655543 22 1223478999999999999854 4458889999999999
Q ss_pred CCeeecccchhhcCCccCceeecCCCccc-cccCccccCCCCccEEeCCCC-cccccCC
Q 039967 385 LNQLSGGMPLELGSLIELQYLDLSTNKLK-SSIPKSIGNLLRLCYLDLSNN-QFGHKIL 441 (445)
Q Consensus 385 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~l~l~~~-~~~~~~~ 441 (445)
+|++. .+|..+..+++|+.|++++|++. +..+..+..+++|+.+++.+| .+.+..|
T Consensus 223 ~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~ 280 (317)
T 3o53_A 223 NNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE 280 (317)
T ss_dssp TSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSS
T ss_pred CCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCch
Confidence 99998 56778888999999999999998 566677788889998888844 3334444
No 68
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.91 E-value=7.9e-23 Score=199.77 Aligned_cols=267 Identities=25% Similarity=0.341 Sum_probs=214.4
Q ss_pred ccceEEecCCcCCCCccccccCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcCEEeCC
Q 039967 94 NLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLS 173 (445)
Q Consensus 94 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 173 (445)
+++.++++++.+. .+|..+. ++|++|++++|.++ .+|. .+++|++|++++|.++ .+|. .+++|++|+++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEEC
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECc
Confidence 5888899888877 5565554 79999999999998 4454 5789999999999987 4555 67999999999
Q ss_pred CccccccccccccCCCCCcEEEccCCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCccccccC
Q 039967 174 ENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFV 253 (445)
Q Consensus 174 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 253 (445)
+|.+.. +|. .+++|+.|++++|.++. +|.. +++|++|++++|.+... +. ..++|+.|++++|.+....
T Consensus 110 ~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~l~ 177 (622)
T 3g06_A 110 SNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTSLP 177 (622)
T ss_dssp SCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSCCC
T ss_pred CCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCCCCc
Confidence 999874 444 57899999999999884 4442 48999999999988743 22 3578999999999988743
Q ss_pred hhhhcccccccEEecccCccCCCccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCccccccc-cCCCcce
Q 039967 254 PEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKV-NVPKLGT 332 (445)
Q Consensus 254 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~L~~ 332 (445)
..+++|+.|++++|.+..... .+++|+.|++++|.+. .++. .+++|+.|++++|.+.+.+ .+++|+.
T Consensus 178 ----~~~~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~~lp~~l~~L~~ 245 (622)
T 3g06_A 178 ----MLPSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTSLPVLPSELKE 245 (622)
T ss_dssp ----CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCSCCCCCCTTCCE
T ss_pred ----ccCCCCcEEECCCCCCCCCCC----ccchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccCcCCCCCCcCcE
Confidence 456899999999998874322 3478999999999888 4443 3478999999999988654 3679999
Q ss_pred EEcccCccccCCCccccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCCc
Q 039967 333 FIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLI 400 (445)
Q Consensus 333 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 400 (445)
|++++|+++. ++. .+++|+.|++++|.++ .+|..+.++++|+.|++++|++.+..+..+..++
T Consensus 246 L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 246 LMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp EECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred EECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 9999999984 333 5689999999999998 6688899999999999999999877776655433
No 69
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.90 E-value=6.3e-25 Score=198.66 Aligned_cols=253 Identities=21% Similarity=0.222 Sum_probs=171.5
Q ss_pred ccCCCCcCEEeCCCccccccccccccCCCCCcEEEccCCccCC-CCCcccc-------CCCCcCEEEccCccccCCCCcc
Q 039967 161 IGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSG-SLPPILG-------NLKSLSALGLHINQLSGVIPSS 232 (445)
Q Consensus 161 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~-------~l~~L~~L~l~~~~~~~~~~~~ 232 (445)
+...++|+.+++++|.+ ..|..+... ++.|++.++.+.. ..+..+. .+++|++|++++|.+....+..
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 44567788888888887 455544433 7777777777642 2333332 5778888888888877555554
Q ss_pred c--cCCCcccEEEeeCccccccChhhhccc-----ccccEEecccCccCCCccccccccCCccEEEcCCCcccCC--CCc
Q 039967 233 I--GNLSSLRALYLYNNGLYSFVPEEIRYL-----TSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGP--IPK 303 (445)
Q Consensus 233 ~--~~~~~L~~L~l~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~ 303 (445)
+ ..+++|++|++++|.+... +..+..+ ++|++|++++|.+....+..+..+++|++|++++|++.+. .+.
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 193 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS 193 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHH
T ss_pred HHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHH
Confidence 4 6777888888888877765 4555544 6777777777777665556667777777777777765432 111
Q ss_pred c--ccccCccceeeccCccccccccCCCcceEEcccCccccCCCccccCCCCCcEEECCCCccccccc-hhhccccCCCE
Q 039967 304 S--FKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIP-VQLGKLFSLNK 380 (445)
Q Consensus 304 ~--~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~ 380 (445)
. +..+++|++|++++|.+.... ......+..+++|++|++++|.+.+..+ ..+..+++|+.
T Consensus 194 ~~~~~~l~~L~~L~L~~N~l~~~~----------------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~ 257 (312)
T 1wwl_A 194 ALCPLKFPTLQVLALRNAGMETPS----------------GVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNS 257 (312)
T ss_dssp HSCTTSCTTCCEEECTTSCCCCHH----------------HHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCE
T ss_pred HHHhccCCCCCEEECCCCcCcchH----------------HHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCE
Confidence 2 245566666666665543111 1111233467888999999988886553 44566789999
Q ss_pred EEccCCeeecccchhhcCCccCceeecCCCccccccCccccCCCCccEEeCCCCccccc
Q 039967 381 LILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQFGHK 439 (445)
Q Consensus 381 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~ 439 (445)
|++++|++. .+|..+. ++|++|++++|++++. |. +..+++|++|++++|++++.
T Consensus 258 L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 258 LNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp EECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred EECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence 999999887 6666655 7899999999999865 54 88899999999999998863
No 70
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.89 E-value=2.9e-22 Score=178.09 Aligned_cols=208 Identities=25% Similarity=0.236 Sum_probs=120.7
Q ss_pred CcCEEEccCccccCCCCccccCCCcccEEEeeCccccccChhhhcccccccEEecccCccCCCccccccccCCccEEEcC
Q 039967 214 SLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMC 293 (445)
Q Consensus 214 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 293 (445)
++++|+++++.+.......+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 34444444444443333344444555555555554444444444455555555555555544444445555556666666
Q ss_pred CCcccCCCCccccccCccceeeccCccccccccCCCcceEEcccCcccc-CCCccccCCCCCcEEECCCCccccccchhh
Q 039967 294 ENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISE-SIPPEIGDSPKLQVLDLSSNNIVGEIPVQL 372 (445)
Q Consensus 294 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 372 (445)
+|.+.+..+..+..+++|+.|++++|.+. . ..+..+..+++|++|++++|.+++..+..+
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-------------------~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 169 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQ-------------------SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCC-------------------CCCCCGGGGGCTTCCEEECCSSCCCEECGGGG
T ss_pred CCCccccCchhcccCCCCCEEECcCCccc-------------------eecCchhhccCCCCCEEECCCCCCCcCCHHHh
Confidence 55555444434555555555555554432 2 134566667777777777777776655666
Q ss_pred ccccCCC----EEEccCCeeecccchhhcCCccCceeecCCCccccccCccccCCCCccEEeCCCCcccccCC
Q 039967 373 GKLFSLN----KLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQFGHKIL 441 (445)
Q Consensus 373 ~~~~~L~----~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~ 441 (445)
..+++|+ .|++++|++.+..+..+ ...+|+.|++++|+++...+..|..+++|++|++++|+|.+..|
T Consensus 170 ~~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 170 RVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp HHHHTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred hhhhhccccceeeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 6666666 77777777764433333 34478888888888776555666777888888888887775544
No 71
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.89 E-value=6.2e-24 Score=192.11 Aligned_cols=201 Identities=20% Similarity=0.225 Sum_probs=89.6
Q ss_pred CCCcCEEeCCCccccccccccc--cCCCCCcEEEccCCccCCCCCccccCC-----CCcCEEEccCccccCCCCccccCC
Q 039967 164 LKSLLQLDLSENQLIGSIPLSF--GNLSSLTLMSLFNNSLSGSLPPILGNL-----KSLSALGLHINQLSGVIPSSIGNL 236 (445)
Q Consensus 164 l~~L~~L~l~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~~~~~ 236 (445)
+++|++|++++|.+.+..|..+ ..+++|++|++++|.+... |..+..+ ++|++|++++|.+....+..++.+
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 3444444444444333333332 3344444444444444332 3333333 444444444444443333444445
Q ss_pred CcccEEEeeCcccccc--Chhhh--cccccccEEecccCccCCC---ccccccccCCccEEEcCCCcccCCCC-cccccc
Q 039967 237 SSLRALYLYNNGLYSF--VPEEI--RYLTSLSELELCTNHLSGV---IPHSIGNLTGLLLLNMCENHLSGPIP-KSFKNL 308 (445)
Q Consensus 237 ~~L~~L~l~~~~~~~~--~~~~~--~~~~~L~~L~l~~~~~~~~---~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~ 308 (445)
++|++|++++|.+... .+..+ ..+++|++|++++|.+... ....+..+++|++|++++|.+.+..+ ..+..+
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l 252 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence 5555555555443221 01111 3445555555555555421 11222344566666666666554432 233344
Q ss_pred CccceeeccCccccccccCCCcceEEcccCccccCCCccccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCee
Q 039967 309 TSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQL 388 (445)
Q Consensus 309 ~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 388 (445)
++|+.|++++|.+. ..|..+. ++|++|++++|.+++. |. +..+++|++|++++|++
T Consensus 253 ~~L~~L~Ls~N~l~--------------------~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 253 SQLNSLNLSFTGLK--------------------QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPF 308 (312)
T ss_dssp TTCCEEECTTSCCS--------------------SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTT
T ss_pred CCCCEEECCCCccC--------------------hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCC
Confidence 55555555555443 2222222 4455555555555533 33 45555555555555554
Q ss_pred e
Q 039967 389 S 389 (445)
Q Consensus 389 ~ 389 (445)
.
T Consensus 309 ~ 309 (312)
T 1wwl_A 309 L 309 (312)
T ss_dssp T
T ss_pred C
Confidence 3
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=1.1e-23 Score=201.68 Aligned_cols=233 Identities=21% Similarity=0.175 Sum_probs=126.1
Q ss_pred CCCCceEEeccCccccccCccccCCCCcCEEeCCCccccccccccccCCCCCcEEEccCCccCCCCCccccCCCCcCEEE
Q 039967 140 LSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALG 219 (445)
Q Consensus 140 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 219 (445)
+++|++|++++|.+....|..|..+++|++|++++|.+.+..| +..+++|++|++++|.+... + ..++|++|+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-~----~~~~L~~L~ 105 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-L----VGPSIETLH 105 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE-E----ECTTCCEEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC-C----CCCCcCEEE
Confidence 3467777777776665555566666777777777766654333 56666666666666655521 1 125555555
Q ss_pred ccCccccCCCCccccCCCcccEEEeeCccccccChhhhcccccccEEecccCccCCCccccccccCCccEEEcCCCcccC
Q 039967 220 LHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSG 299 (445)
Q Consensus 220 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 299 (445)
+++|.+..... ..+++|+.|++++|.+....+..+..+ ++|+.|++++|.+.+
T Consensus 106 L~~N~l~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l------------------------~~L~~L~Ls~N~l~~ 158 (487)
T 3oja_A 106 AANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCR------------------------SRVQYLDLKLNEIDT 158 (487)
T ss_dssp CCSSCCCCEEE---CCCSSCEEEECCSSCCCSGGGBCGGGG------------------------SSEEEEECTTSCCCE
T ss_pred CcCCcCCCCCc---cccCCCCEEECCCCCCCCCCchhhcCC------------------------CCCCEEECCCCCCCC
Confidence 55555442221 123444555555544444333344444 444444444444443
Q ss_pred CCCcccc-ccCccceeeccCccccccc---cCCCcceEEcccCccccCCCccccCCCCCcEEECCCCccccccchhhccc
Q 039967 300 PIPKSFK-NLTSVERVLLNQNNLSGKV---NVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKL 375 (445)
Q Consensus 300 ~~~~~~~-~~~~L~~L~l~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 375 (445)
..+..+. .+++|+.|++++|.+.+.. .+++|+.|++++|.+++ .+..+..+++|+.|++++|.+. .+|..+..+
T Consensus 159 ~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l 236 (487)
T 3oja_A 159 VNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFS 236 (487)
T ss_dssp EEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCC
T ss_pred cChHHHhhhCCcccEEecCCCccccccccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCc-ccchhhccC
Confidence 3333332 3444444444444433221 13344444444444443 2233566677777777777776 355566667
Q ss_pred cCCCEEEccCCeee-cccchhhcCCccCceeecC
Q 039967 376 FSLNKLILNLNQLS-GGMPLELGSLIELQYLDLS 408 (445)
Q Consensus 376 ~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~ 408 (445)
++|+.|++++|++. +..|..+..++.|+.++++
T Consensus 237 ~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 237 QNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp TTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 77777777777775 3445556666777777665
No 73
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.89 E-value=1.2e-21 Score=173.30 Aligned_cols=202 Identities=25% Similarity=0.278 Sum_probs=120.0
Q ss_pred CCcEEEccCCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCccccccChhhhcccccccEEecc
Q 039967 190 SLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELC 269 (445)
Q Consensus 190 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 269 (445)
..+.++++++.++ ..|..+. +.+++|+++++.+....+..+..+++|++|++++|.+....+..+..+++|++|+++
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 4567777777766 3444332 567777777777665555566667777777777776666555555666666666666
Q ss_pred cCccCCCccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCccccccccCCCcceEEcccCccccCCCcccc
Q 039967 270 TNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIG 349 (445)
Q Consensus 270 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 349 (445)
+|.+....+..+..+++|++|++++|.+.+..+..|..+++|+.|++++|.+. ...+..+.
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-------------------~~~~~~~~ 154 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-------------------SLPKGVFD 154 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-------------------CCCTTTTT
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCC-------------------ccCHhHcc
Confidence 66666544455555666666666666665444444555555555555444332 22333455
Q ss_pred CCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCccc
Q 039967 350 DSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLK 413 (445)
Q Consensus 350 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 413 (445)
.+++|++|++++|.+.+..+..|..+++|+.|++++|++.+..+..+..+++|+.|++++|++.
T Consensus 155 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 155 KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 5666666666666666555555566666666666666665443444555666666666666553
No 74
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=3.6e-23 Score=198.17 Aligned_cols=229 Identities=21% Similarity=0.167 Sum_probs=146.4
Q ss_pred CCcEEEccCCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCccccccChhhhcccccccEEecc
Q 039967 190 SLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELC 269 (445)
Q Consensus 190 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 269 (445)
+|+.|++++|.+....+..+..+++|++|++++|.+....+ +..+++|++|++++|.+.... ..++|+.|+++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEECc
Confidence 44444444444444334444455555555555554432221 555666666666666655432 22678888888
Q ss_pred cCccCCCccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCccccccc------cCCCcceEEcccCccccC
Q 039967 270 TNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKV------NVPKLGTFIISVNNISES 343 (445)
Q Consensus 270 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~------~~~~L~~L~l~~~~~~~~ 343 (445)
+|.+....+. .+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+.. .+++|+.|++++|.+++.
T Consensus 108 ~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 184 (487)
T 3oja_A 108 NNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (487)
T ss_dssp SSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred CCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence 8877754432 3578999999999998777888889999999999999876421 256777777777776644
Q ss_pred CCccccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCccc-cccCccccC
Q 039967 344 IPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLK-SSIPKSIGN 422 (445)
Q Consensus 344 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~ 422 (445)
. ....+++|++|++++|.+++..+ .+..+++|+.|++++|.+. .+|..+..+++|+.|++++|++. +..+..+..
T Consensus 185 ~--~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~ 260 (487)
T 3oja_A 185 K--GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260 (487)
T ss_dssp E--CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBCHHHHHHHHTT
T ss_pred c--ccccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCcCcchHHHHHh
Confidence 2 22346777777777777764333 4666777777777777776 35556666677777777777766 334455566
Q ss_pred CCCccEEeCC
Q 039967 423 LLRLCYLDLS 432 (445)
Q Consensus 423 ~~~L~~l~l~ 432 (445)
++.|+.+++.
T Consensus 261 l~~L~~l~~~ 270 (487)
T 3oja_A 261 NQRVQTVAKQ 270 (487)
T ss_dssp CHHHHHHHHH
T ss_pred CCCCcEEecc
Confidence 6666666554
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.88 E-value=2.3e-21 Score=172.29 Aligned_cols=205 Identities=24% Similarity=0.270 Sum_probs=149.3
Q ss_pred CCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcCEEeCCCccccccccccccCCCCCcEEEc
Q 039967 117 NSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSL 196 (445)
Q Consensus 117 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 196 (445)
++|++|++++|.++...+..|..+++|++|++++|.+....+..|.++++|++|++++|.+....+..+..+++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 46777777777777555556777777888888777776555556777778888888877776655566777788888888
Q ss_pred cCCccCCCCCccccCCCCcCEEEccCccccCC-CCccccCCCcccEEEeeCccccccChhhhccccccc----EEecccC
Q 039967 197 FNNSLSGSLPPILGNLKSLSALGLHINQLSGV-IPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLS----ELELCTN 271 (445)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~----~L~l~~~ 271 (445)
.+|.+....+..+..+++|++|++++|.+... .+..+..+++|++|++++|.+....+..+..+++++ .+++++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 87777765555677778888888888777643 356777778888888888887776666666666666 7888888
Q ss_pred ccCCCccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCcccc
Q 039967 272 HLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLS 322 (445)
Q Consensus 272 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 322 (445)
.+....+..+.. .+|+.|++++|.+.+..+..+..+++|+.+++++|.+.
T Consensus 188 ~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 188 PMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp CCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred cccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 777544433333 47888888888888666666778888888888888776
No 76
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=6.7e-22 Score=175.08 Aligned_cols=230 Identities=23% Similarity=0.257 Sum_probs=152.9
Q ss_pred CCcCEEeCCCccccccccccccCCCCCcEEEccCCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEe
Q 039967 165 KSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYL 244 (445)
Q Consensus 165 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 244 (445)
.++..+++..+.+... .....+++|+.|.+.++.+.. . ..+..+++|+.|++++|.+... ..+..+++|++|++
T Consensus 19 ~~l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L 92 (272)
T 3rfs_A 19 AETIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLIL 92 (272)
T ss_dssp HHHHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEEC
T ss_pred HHHHHHHhcCcccccc--cccccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEEC
Confidence 3444555555554322 234567788888888887763 2 3466778888888888877632 35667777777777
Q ss_pred eCccccccChhhhcccccccEEecccCccCCCccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCcccccc
Q 039967 245 YNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGK 324 (445)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 324 (445)
++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-- 170 (272)
T 3rfs_A 93 TGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-- 170 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC--
T ss_pred CCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcC--
Confidence 777777666656667777777777777776555555666777777777777766555555556666666665555443
Q ss_pred ccCCCcceEEcccCccccCCCccccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCCccCce
Q 039967 325 VNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQY 404 (445)
Q Consensus 325 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 404 (445)
+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|++. +.+++|+.
T Consensus 171 -----------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~ 226 (272)
T 3rfs_A 171 -----------------SLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRY 226 (272)
T ss_dssp -----------------CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC-------CCTTTTHH
T ss_pred -----------------ccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc-------ccCcHHHH
Confidence 334445667777888888888777666666777778888888877665 23556777
Q ss_pred eecCCCccccccCccccCCCCc
Q 039967 405 LDLSTNKLKSSIPKSIGNLLRL 426 (445)
Q Consensus 405 L~l~~~~~~~~~~~~~~~~~~L 426 (445)
|++.+|.+++..|..+..++..
T Consensus 227 l~~~~n~~~g~ip~~~~~~~~~ 248 (272)
T 3rfs_A 227 LSEWINKHSGVVRNSAGSVAPD 248 (272)
T ss_dssp HHHHHHHTGGGBBCTTSCBCGG
T ss_pred HHHHHHhCCCcccCcccccCCC
Confidence 7777777777777666655543
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.87 E-value=8.5e-21 Score=167.84 Aligned_cols=181 Identities=29% Similarity=0.295 Sum_probs=88.5
Q ss_pred CCceEEeccCccccccCccccCCCCcCEEeCCCccccccccccccCCCCCcEEEccCCccCCCCCccccCCCCcCEEEcc
Q 039967 142 NLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLH 221 (445)
Q Consensus 142 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 221 (445)
++++|+++++.+....+..|.++++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|+++
T Consensus 38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 117 (270)
T 2o6q_A 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD 117 (270)
T ss_dssp TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECC
T ss_pred CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECC
Confidence 44444444444443333344444444444444444443322333444445555555444443333344444555555555
Q ss_pred CccccCCCCccccCCCcccEEEeeCccccccChhhhcccccccEEecccCccCCCccccccccCCccEEEcCCCcccCCC
Q 039967 222 INQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPI 301 (445)
Q Consensus 222 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 301 (445)
+|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+.+..
T Consensus 118 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 197 (270)
T 2o6q_A 118 RNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVP 197 (270)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCC
Confidence 55444443344445555555555555554444444445555555555555555444444555555555555555555444
Q ss_pred CccccccCccceeeccCcccc
Q 039967 302 PKSFKNLTSVERVLLNQNNLS 322 (445)
Q Consensus 302 ~~~~~~~~~L~~L~l~~~~~~ 322 (445)
+..+..+++|+.|++++|.+.
T Consensus 198 ~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 198 EGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCBC
T ss_pred HHHhccccCCCEEEecCCCee
Confidence 444555555555555555543
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.86 E-value=1.1e-20 Score=168.49 Aligned_cols=201 Identities=25% Similarity=0.275 Sum_probs=88.4
Q ss_pred cCCCCCcEEEccCCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCccccccChhhhcccccccE
Q 039967 186 GNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSE 265 (445)
Q Consensus 186 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 265 (445)
..+++++++++.++.++ ..|..+. +.++.|++++|.+....+..+..+++|+.|++++|.+...... ..+++|++
T Consensus 7 ~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~ 81 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGT 81 (290)
T ss_dssp ECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCE
T ss_pred cccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCE
Confidence 44555566666555555 2332222 4455555555555433334445555555555555544432111 33444444
Q ss_pred EecccCccCCCccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCccccccccCCCcceEEcccCccccCCC
Q 039967 266 LELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIP 345 (445)
Q Consensus 266 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 345 (445)
|++++|.+. ..+..+..+++|++|++++|++.+..+..|..+++|+.|++++|++. ...+
T Consensus 82 L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-------------------~~~~ 141 (290)
T 1p9a_G 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-------------------TLPP 141 (290)
T ss_dssp EECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC-------------------CCCT
T ss_pred EECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC-------------------ccCh
Confidence 444444443 22223333444444444444444333333333333333333333222 2222
Q ss_pred ccccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCcc
Q 039967 346 PEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKL 412 (445)
Q Consensus 346 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 412 (445)
..+..+++|++|++++|.++...+..+..+++|+.|++++|++. .+|..+..+++|+.|++++|++
T Consensus 142 ~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 142 GLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp TTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred hhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCc
Confidence 33344445555555555544333333444455555555555444 3344444444455555554444
No 79
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=1.8e-22 Score=184.98 Aligned_cols=247 Identities=18% Similarity=0.169 Sum_probs=151.6
Q ss_pred CcCEEeCCCccccccccccccCC--CCCcEEEccCCccCCCCCccccCCCCcCEEEccCccccCC-CCccccCCCcccEE
Q 039967 166 SLLQLDLSENQLIGSIPLSFGNL--SSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGV-IPSSIGNLSSLRAL 242 (445)
Q Consensus 166 ~L~~L~l~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L 242 (445)
.++.++++++.+. +..+..+ +.++.+.+.++.+....+. +..+++|++|++++|.+... .+..+..+++|++|
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 4778888887754 4455555 7888999988888765554 45678888888888876543 44556778888888
Q ss_pred EeeCccccccChhhhcccccccEEecccC-ccCCC-ccccccccCCccEEEcCCC-cccCC-CCccccccC-ccceeecc
Q 039967 243 YLYNNGLYSFVPEEIRYLTSLSELELCTN-HLSGV-IPHSIGNLTGLLLLNMCEN-HLSGP-IPKSFKNLT-SVERVLLN 317 (445)
Q Consensus 243 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~l~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~-~L~~L~l~ 317 (445)
++++|.+....+..+..+++|++|++++| .+... .+..+..+++|++|++++| .+.+. .+..+..++ +|++|+++
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~ 203 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 203 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence 88888776655666777888888888888 45432 3444667788888888888 66643 355566777 78888887
Q ss_pred Ccc--cccc------ccCCCcceEEcccCc-cccCCCccccCCCCCcEEECCCCc-cccccchhhccccCCCEEEccCCe
Q 039967 318 QNN--LSGK------VNVPKLGTFIISVNN-ISESIPPEIGDSPKLQVLDLSSNN-IVGEIPVQLGKLFSLNKLILNLNQ 387 (445)
Q Consensus 318 ~~~--~~~~------~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~ 387 (445)
+|. +.+. ..+++|+.|++++|. +++..+..+..+++|++|++++|. +.+.....+.++++|+.|++++|
T Consensus 204 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~- 282 (336)
T 2ast_B 204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI- 282 (336)
T ss_dssp SCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-
T ss_pred CCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-
Confidence 773 3211 125555555555555 343344444555555555555553 22222223445555555555555
Q ss_pred eecccchhhcCC-ccCceeecCCCccccccCccc
Q 039967 388 LSGGMPLELGSL-IELQYLDLSTNKLKSSIPKSI 420 (445)
Q Consensus 388 ~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~ 420 (445)
+... .+..+ .+++.|++++|++++..+..+
T Consensus 283 i~~~---~~~~l~~~l~~L~l~~n~l~~~~~~~~ 313 (336)
T 2ast_B 283 VPDG---TLQLLKEALPHLQINCSHFTTIARPTI 313 (336)
T ss_dssp SCTT---CHHHHHHHSTTSEESCCCSCCTTCSSC
T ss_pred cCHH---HHHHHHhhCcceEEecccCccccCCcc
Confidence 2211 11111 234455555555554444443
No 80
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.85 E-value=5.8e-22 Score=183.09 Aligned_cols=246 Identities=17% Similarity=0.158 Sum_probs=149.7
Q ss_pred EeCCCccccccccccccCCCCCcEEEccCCccCCCCC----ccccCCC-CcCEEEccCccccCCCCccccCC-----Ccc
Q 039967 170 LDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLP----PILGNLK-SLSALGLHINQLSGVIPSSIGNL-----SSL 239 (445)
Q Consensus 170 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~-----~~L 239 (445)
+.++.+.+.+..|..+...++|++|++++|.+....+ ..+..++ +|++|++++|.+.......+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 4667777776666655666669999999888876555 5666777 78888888888775554444443 788
Q ss_pred cEEEeeCccccccChhhhc----cc-ccccEEecccCccCCCcccccc----c-cCCccEEEcCCCcccCCCCc----cc
Q 039967 240 RALYLYNNGLYSFVPEEIR----YL-TSLSELELCTNHLSGVIPHSIG----N-LTGLLLLNMCENHLSGPIPK----SF 305 (445)
Q Consensus 240 ~~L~l~~~~~~~~~~~~~~----~~-~~L~~L~l~~~~~~~~~~~~l~----~-~~~L~~L~l~~~~~~~~~~~----~~ 305 (445)
++|++++|.+....+..+. .. ++|++|++++|.+.......+. . .++|++|++++|.+.+.... .+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 8888888887765554333 33 6788888888887755544332 2 35788888888877754332 23
Q ss_pred cccC-ccceeeccCcccccccc---------C-CCcceEEcccCccccCCCc----cccC-CCCCcEEECCCCccccccc
Q 039967 306 KNLT-SVERVLLNQNNLSGKVN---------V-PKLGTFIISVNNISESIPP----EIGD-SPKLQVLDLSSNNIVGEIP 369 (445)
Q Consensus 306 ~~~~-~L~~L~l~~~~~~~~~~---------~-~~L~~L~l~~~~~~~~~~~----~~~~-~~~L~~L~l~~~~~~~~~~ 369 (445)
...+ .|++|++++|.+.+... + ++|+.|++++|.+...... .+.. .++|++|++++|.+.+..+
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 242 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL 242 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence 3444 77777777777654332 2 3666666666665542211 2222 3456666666666554333
Q ss_pred ----hhhccccCCCEEEccCCeeecc-------cchhhcCCccCceeecCCCccccc
Q 039967 370 ----VQLGKLFSLNKLILNLNQLSGG-------MPLELGSLIELQYLDLSTNKLKSS 415 (445)
Q Consensus 370 ----~~~~~~~~L~~L~l~~~~~~~~-------~~~~~~~~~~L~~L~l~~~~~~~~ 415 (445)
..+..+++|+.|++++|.+.+. ++..+..+++|+.||+++|++...
T Consensus 243 ~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 243 ENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 2234455666666666653211 122344555566666666665543
No 81
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.85 E-value=4.3e-20 Score=164.67 Aligned_cols=203 Identities=25% Similarity=0.311 Sum_probs=122.5
Q ss_pred ccCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcCEEeCCCccccccccccccCCCCCc
Q 039967 113 LGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLT 192 (445)
Q Consensus 113 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 192 (445)
+.++++++.++++++.++ .+|..+. ++++.|++++|.+....+..|..+++|+.|++++|.+... +. ...+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QV-DGTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-EC-CSCCTTCC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cC-CCCCCcCC
Confidence 444555666666666555 3333332 4566666666665544455566666666666666665532 22 24556666
Q ss_pred EEEccCCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCccccccChhhhcccccccEEecccCc
Q 039967 193 LMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNH 272 (445)
Q Consensus 193 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 272 (445)
+|++++|.+. ..|..+..+++|+.|++++|.+....+..|..+++|++|++++|.+....+..+..+++|+.|++++|.
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 6666666665 445555566666666666666664444556666666666666666666555556666667777777766
Q ss_pred cCCCccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCcccc
Q 039967 273 LSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLS 322 (445)
Q Consensus 273 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 322 (445)
+.......+..+++|+.|++++|.+. .+|..+...+.|+.+.+++|.+.
T Consensus 160 l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 160 LTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred CCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 66555555566677777777777666 45555555666777777776665
No 82
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.85 E-value=1.8e-20 Score=165.91 Aligned_cols=205 Identities=26% Similarity=0.305 Sum_probs=109.9
Q ss_pred CCCCCceEEeccCccccccCccccCCCCcCEEeCCCccccccccccccCCCCCcEEEccCCccCCCCCccccCCCCcCEE
Q 039967 139 NLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSAL 218 (445)
Q Consensus 139 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 218 (445)
.+++|+.|.+.++.+. . ...+..+++|++|++++|.+.. . ..+..+++|++|++++|.+....+..+..+++|++|
T Consensus 39 ~l~~L~~L~l~~~~i~-~-~~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIK-S-VQGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHTTCCEEECTTSCCC-C-CTTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred cccceeeeeeCCCCcc-c-ccccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 3444445555444443 1 1224445555555555555432 1 234455555555555555554444444555555555
Q ss_pred EccCccccCCCCccccCCCcccEEEeeCccccccChhhhcccccccEEecccCccCCCccccccccCCccEEEcCCCccc
Q 039967 219 GLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLS 298 (445)
Q Consensus 219 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 298 (445)
++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+.
T Consensus 115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence 55555555444444555566666666666655544445556666666666666666554455566667777777777666
Q ss_pred CCCCccccccCccceeeccCccccccccCCCcceEEcccCccccCCCcccc
Q 039967 299 GPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIG 349 (445)
Q Consensus 299 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 349 (445)
+..+..+..+++|+.|++++|.+.. .++.++.+++..+.+.+..|.++.
T Consensus 195 ~~~~~~~~~l~~L~~L~l~~N~~~~--~~~~l~~l~~~~n~~~g~ip~~~~ 243 (272)
T 3rfs_A 195 SVPDGVFDRLTSLQYIWLHDNPWDC--TCPGIRYLSEWINKHSGVVRNSAG 243 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBCC--CTTTTHHHHHHHHHTGGGBBCTTS
T ss_pred ccCHHHHhCCcCCCEEEccCCCccc--cCcHHHHHHHHHHhCCCcccCccc
Confidence 5555556666777777776665531 233444444444444444444433
No 83
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.85 E-value=2.7e-22 Score=185.33 Aligned_cols=257 Identities=16% Similarity=0.127 Sum_probs=147.0
Q ss_pred EEccCCcccCCCCccccCCCCCceEEeccCccccccC----ccccCCC-CcCEEeCCCccccccccccccCC-----CCC
Q 039967 122 MDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIP----SIIGNLK-SLLQLDLSENQLIGSIPLSFGNL-----SSL 191 (445)
Q Consensus 122 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~~~~~~l~~l-----~~L 191 (445)
.+++++.++...|..+...++|++|++++|.+....+ ..+..++ +|++|++++|.+....+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 4666777765555555555568888888777764444 5566666 77777777777765555555443 677
Q ss_pred cEEEccCCccCCCCCcc----ccCC-CCcCEEEccCccccCCCCcc----ccC-CCcccEEEeeCccccccChh----hh
Q 039967 192 TLMSLFNNSLSGSLPPI----LGNL-KSLSALGLHINQLSGVIPSS----IGN-LSSLRALYLYNNGLYSFVPE----EI 257 (445)
Q Consensus 192 ~~L~l~~~~~~~~~~~~----~~~l-~~L~~L~l~~~~~~~~~~~~----~~~-~~~L~~L~l~~~~~~~~~~~----~~ 257 (445)
++|++++|.++...+.. +... ++|++|++++|.+....... +.. .++|++|++++|.+...... .+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 77777777766443332 2233 56666666666665333222 222 24566666666655532221 22
Q ss_pred cccc-cccEEecccCccCCCccccc----ccc-CCccEEEcCCCcccCCC----CccccccCccceeeccCccccccccC
Q 039967 258 RYLT-SLSELELCTNHLSGVIPHSI----GNL-TGLLLLNMCENHLSGPI----PKSFKNLTSVERVLLNQNNLSGKVNV 327 (445)
Q Consensus 258 ~~~~-~L~~L~l~~~~~~~~~~~~l----~~~-~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~ 327 (445)
...+ +|++|++++|.+....+..+ ... ++|++|++++|.+.+.. +..+... .
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~------------------~ 224 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSI------------------P 224 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHS------------------C
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcC------------------C
Confidence 2232 55566665555543333222 222 35555555555554321 1122221 2
Q ss_pred CCcceEEcccCccccCCC----ccccCCCCCcEEECCCCccccc-------cchhhccccCCCEEEccCCeeecccchhh
Q 039967 328 PKLGTFIISVNNISESIP----PEIGDSPKLQVLDLSSNNIVGE-------IPVQLGKLFSLNKLILNLNQLSGGMPLEL 396 (445)
Q Consensus 328 ~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~-------~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 396 (445)
++|+.|++++|.++...+ ..+..+++|++|++++|.+.+. .+..+.++++|+.|++++|++....+..+
T Consensus 225 ~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~~ 304 (362)
T 3goz_A 225 NHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPI 304 (362)
T ss_dssp TTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHHH
T ss_pred CCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHHH
Confidence 345555555555544332 3456789999999999984432 33456778999999999999875544433
No 84
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.84 E-value=1.3e-22 Score=189.46 Aligned_cols=94 Identities=19% Similarity=0.210 Sum_probs=46.7
Q ss_pred cCccccCCCCcCEEeCCCcccccccc----ccccCCCCCcEEEccCCccCC---CCCcc-------ccCCCCcCEEEccC
Q 039967 157 IPSIIGNLKSLLQLDLSENQLIGSIP----LSFGNLSSLTLMSLFNNSLSG---SLPPI-------LGNLKSLSALGLHI 222 (445)
Q Consensus 157 ~~~~~~~l~~L~~L~l~~~~~~~~~~----~~l~~l~~L~~L~l~~~~~~~---~~~~~-------~~~l~~L~~L~l~~ 222 (445)
++..+..+++|++|++++|.+....+ ..+..+++|++|++++|.+.. ..|.. +..+++|++|++++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 34445555566666666665543322 224455666666665543321 11211 23455566666665
Q ss_pred ccccCC----CCccccCCCcccEEEeeCcccc
Q 039967 223 NQLSGV----IPSSIGNLSSLRALYLYNNGLY 250 (445)
Q Consensus 223 ~~~~~~----~~~~~~~~~~L~~L~l~~~~~~ 250 (445)
|.+... .+..+..+++|++|++++|.+.
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~ 135 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG 135 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCC
Confidence 555431 2223445566666666666554
No 85
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.83 E-value=6.6e-20 Score=159.10 Aligned_cols=197 Identities=18% Similarity=0.187 Sum_probs=134.1
Q ss_pred CCcEEeccCcccCCCCCccccCCCCCcEEEecCcc-cccCCCcccccCCCccEEEecCcccccccceEEecCCcCCCCcc
Q 039967 32 NLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQ-LHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIP 110 (445)
Q Consensus 32 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~l~l~~~~~~~~L~~l~l~~~~~~~~~~ 110 (445)
+++.|++++|.+....+..+.++++|+.|++++|. +....+..+.++++|++++++++ +.+....+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~-------------n~l~~i~~ 98 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT-------------RNLTYIDP 98 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEE-------------TTCCEECT
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCC-------------CCeeEcCH
Confidence 67888888887776666677778888888888775 66544556666665555544430 33343444
Q ss_pred ccccCCCCCcEEEccCCcccCCCCccccCCCCCc---eEEeccC-ccccccCccccCCCCcC-EEeCCCccccccccccc
Q 039967 111 LVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLD---KLYLYSN-SFSGSIPSIIGNLKSLL-QLDLSENQLIGSIPLSF 185 (445)
Q Consensus 111 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~---~L~l~~~-~~~~~~~~~~~~l~~L~-~L~l~~~~~~~~~~~~l 185 (445)
..|.++++|++|++++|.++. +|. +..+++|+ +|++++| .+....+..|..+++|+ .|++++|.+....+..+
T Consensus 99 ~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~ 176 (239)
T 2xwt_C 99 DALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAF 176 (239)
T ss_dssp TSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTT
T ss_pred HHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhc
Confidence 567777888888888887774 454 77777777 8888887 77655555677788888 88888887763333333
Q ss_pred cCCCCCcEEEccCCc-cCCCCCccccCC-CCcCEEEccCccccCCCCccccCCCcccEEEeeCc
Q 039967 186 GNLSSLTLMSLFNNS-LSGSLPPILGNL-KSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNN 247 (445)
Q Consensus 186 ~~l~~L~~L~l~~~~-~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 247 (445)
.. ++|+.|++++|+ +....+..+..+ ++|+.+++++|.+...... .+++|+.|++.++
T Consensus 177 ~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 177 NG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp TT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred CC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 33 778888888884 765555667777 7888888888877643322 4567777777654
No 86
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.83 E-value=4.1e-21 Score=175.87 Aligned_cols=248 Identities=17% Similarity=0.179 Sum_probs=176.8
Q ss_pred CCCcEEEccCCccCCCCCccccCC--CCcCEEEccCccccCCCCccccCCCcccEEEeeCcccccc-ChhhhcccccccE
Q 039967 189 SSLTLMSLFNNSLSGSLPPILGNL--KSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSF-VPEEIRYLTSLSE 265 (445)
Q Consensus 189 ~~L~~L~l~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~ 265 (445)
..++.+++.++.+. +..+..+ +.++.++++++.+....+. +..+++|++|++++|.+... .+..+..+++|++
T Consensus 47 ~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 47 SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 34778888877654 3445555 7888888888887654443 45678888888888877653 5566778888888
Q ss_pred EecccCccCCCccccccccCCccEEEcCCC-cccCC-CCccccccCccceeeccCc-ccccc------ccCC-CcceEEc
Q 039967 266 LELCTNHLSGVIPHSIGNLTGLLLLNMCEN-HLSGP-IPKSFKNLTSVERVLLNQN-NLSGK------VNVP-KLGTFII 335 (445)
Q Consensus 266 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~~L~~L~l~~~-~~~~~------~~~~-~L~~L~l 335 (445)
|++++|.+....+..+..+++|++|++++| .+.+. .+..+..+++|++|++++| .+.+. ..++ +|+.|++
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l 202 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL 202 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEe
Confidence 888888776556667777888888888888 45532 4555777888888888888 76642 2377 8888888
Q ss_pred ccCc--cc-cCCCccccCCCCCcEEECCCCc-cccccchhhccccCCCEEEccCCe-eecccchhhcCCccCceeecCCC
Q 039967 336 SVNN--IS-ESIPPEIGDSPKLQVLDLSSNN-IVGEIPVQLGKLFSLNKLILNLNQ-LSGGMPLELGSLIELQYLDLSTN 410 (445)
Q Consensus 336 ~~~~--~~-~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~ 410 (445)
++|. ++ ...+..+..+++|++|++++|. +++..+..+.++++|++|++++|. +.......+..+++|+.|++++|
T Consensus 203 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 203 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 8884 44 2334455678888888888888 666667778888888888888885 32222235677888888888888
Q ss_pred ccccccCccccCC-CCccEEeCCCCcccccCCCCC
Q 039967 411 KLKSSIPKSIGNL-LRLCYLDLSNNQFGHKILVEL 444 (445)
Q Consensus 411 ~~~~~~~~~~~~~-~~L~~l~l~~~~~~~~~~~~~ 444 (445)
+.. ..+..+ ..++.|++.+|++++.+|.++
T Consensus 283 -i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~~ 313 (336)
T 2ast_B 283 -VPD---GTLQLLKEALPHLQINCSHFTTIARPTI 313 (336)
T ss_dssp -SCT---TCHHHHHHHSTTSEESCCCSCCTTCSSC
T ss_pred -cCH---HHHHHHHhhCcceEEecccCccccCCcc
Confidence 432 333333 236666688888888888654
No 87
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.83 E-value=1.7e-19 Score=157.69 Aligned_cols=159 Identities=28% Similarity=0.267 Sum_probs=84.1
Q ss_pred cccEEecccCccCCCccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCccccccccCCCcceEEcccCccc
Q 039967 262 SLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNIS 341 (445)
Q Consensus 262 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~ 341 (445)
+++.|++++|.+....+..+..+++|++|++++|.+.+..+..|..+++|+.|++++|.+ .
T Consensus 36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-------------------~ 96 (251)
T 3m19_A 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-------------------A 96 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC-------------------C
T ss_pred CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcc-------------------c
Confidence 344444444444433333344444444444444444433333344444444444444333 2
Q ss_pred cCCCccccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCccccccCcccc
Q 039967 342 ESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIG 421 (445)
Q Consensus 342 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 421 (445)
...+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++.+..+..+..+++|+.|++++|++....+..|.
T Consensus 97 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 176 (251)
T 3m19_A 97 SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFD 176 (251)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHh
Confidence 33334455556666666666666644444555666666666666666544444566666666666666666655555566
Q ss_pred CCCCccEEeCCCCccccc
Q 039967 422 NLLRLCYLDLSNNQFGHK 439 (445)
Q Consensus 422 ~~~~L~~l~l~~~~~~~~ 439 (445)
.+++|++|++.+|+|...
T Consensus 177 ~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 177 RLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TCTTCCEEECCSCCBCTT
T ss_pred CCCCCCEEEeeCCceeCC
Confidence 666666666666666543
No 88
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.82 E-value=1.3e-19 Score=157.32 Aligned_cols=195 Identities=21% Similarity=0.312 Sum_probs=115.4
Q ss_pred CCcEEEccCCcccCCCCccccCCCCCceEEeccCc-cccccCccccCCCCcCEEeCCC-ccccccccccccCCCCCcEEE
Q 039967 118 SLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNS-FSGSIPSIIGNLKSLLQLDLSE-NQLIGSIPLSFGNLSSLTLMS 195 (445)
Q Consensus 118 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~ 195 (445)
++++|+++++.++...+..|..+++|++|++++|. +....+..|.++++|++|++++ |.+....+..|..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 66666776666665555566666677777776665 5544444566666777777766 666544445566666666666
Q ss_pred ccCCccCCCCCccccCCCCcC---EEEccCc-cccCCCCccccCCCccc-EEEeeCccccccChhhhcccccccEEeccc
Q 039967 196 LFNNSLSGSLPPILGNLKSLS---ALGLHIN-QLSGVIPSSIGNLSSLR-ALYLYNNGLYSFVPEEIRYLTSLSELELCT 270 (445)
Q Consensus 196 l~~~~~~~~~~~~~~~l~~L~---~L~l~~~-~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 270 (445)
+++|.+.. .|. +..+++|+ .+++++| .+.......|..+++|+ .+++++|.+.......+.. ++|+.|++++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~ 188 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNK 188 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTT
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCC
Confidence 66666653 333 55555555 6666666 55544444566666666 6666666665544444443 5666666666
Q ss_pred Cc-cCCCcccccccc-CCccEEEcCCCcccCCCCccccccCccceeeccC
Q 039967 271 NH-LSGVIPHSIGNL-TGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQ 318 (445)
Q Consensus 271 ~~-~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 318 (445)
|. +....+..+..+ ++|+.|++++|.+....+. .+++|+.|.+++
T Consensus 189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~ 235 (239)
T 2xwt_C 189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARN 235 (239)
T ss_dssp CTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTT
T ss_pred CCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccC
Confidence 63 554444555555 6666666666666532222 344555555544
No 89
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.82 E-value=1e-19 Score=163.88 Aligned_cols=192 Identities=22% Similarity=0.367 Sum_probs=146.5
Q ss_pred ccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCccccccChhhhcccccccEEecccCccCCCccccccccCCcc
Q 039967 209 LGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLL 288 (445)
Q Consensus 209 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 288 (445)
...+++|++|+++++.+... + .+..+++|+.|++++|.+....+ +..+++|++|++++|.+... ..+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~ 110 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIK 110 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCC
T ss_pred HHHcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCC
Confidence 45678999999999988743 2 57788999999999999887544 78899999999999988753 3678889999
Q ss_pred EEEcCCCcccCCCCccccccCccceeeccCccccccc---cCCCcceEEcccCccccCCCccccCCCCCcEEECCCCccc
Q 039967 289 LLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKV---NVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIV 365 (445)
Q Consensus 289 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 365 (445)
+|++++|.+.+ .+ .+..+++|+.|++++|.+.+.. .+++|+.|++++|++.+..+ +..+++|++|++++|.+.
T Consensus 111 ~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~ 186 (308)
T 1h6u_A 111 TLDLTSTQITD-VT-PLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKIS 186 (308)
T ss_dssp EEECTTSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred EEECCCCCCCC-ch-hhcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccC
Confidence 99999999875 33 3788899999999998876543 36677777887777764322 667777888888877776
Q ss_pred cccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCcccc
Q 039967 366 GEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKS 414 (445)
Q Consensus 366 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 414 (445)
+..+ +..+++|+.|++++|++.+.. .+..+++|+.|++++|+++.
T Consensus 187 ~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 187 DISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred cChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 4433 667777888888877776433 36677778888887777763
No 90
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.82 E-value=3.2e-19 Score=160.62 Aligned_cols=195 Identities=29% Similarity=0.352 Sum_probs=115.8
Q ss_pred cCCCCCCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCCccEEEecCcccccccceEEecCCcCC
Q 039967 27 IGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLF 106 (445)
Q Consensus 27 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~L~~l~l~~~~~~ 106 (445)
...+++|+.|++++|.+.+ .+ .+..+++|++|++++|.+.+. +. +..+++|+++++++| .+.
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n--------------~l~ 98 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGN--------------PLK 98 (308)
T ss_dssp HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSC--------------CCS
T ss_pred HHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCC--------------cCC
Confidence 3446667777777776663 23 466677777777777766532 22 455554444433333 222
Q ss_pred CCccccccCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcCEEeCCCcccccccccccc
Q 039967 107 NSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFG 186 (445)
Q Consensus 107 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~ 186 (445)
. + ..+..+++|++|++++|.++.. + .+..+++|++|++++|.+... +. +..+++|+.|++++|.+... +. +.
T Consensus 99 ~-~-~~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~-~~-l~ 170 (308)
T 1h6u_A 99 N-V-SAIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQYLSIGNAQVSDL-TP-LA 170 (308)
T ss_dssp C-C-GGGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCCCC-GG-GT
T ss_pred C-c-hhhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcC-cc-ccCCCCccEEEccCCcCCCC-hh-hc
Confidence 2 2 2466667777777777776632 2 366677777777777766532 22 66667777777777766532 22 66
Q ss_pred CCCCCcEEEccCCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCccccc
Q 039967 187 NLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYS 251 (445)
Q Consensus 187 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 251 (445)
.+++|+.|++++|.+....+ +..+++|+.|++++|.+.... .+..+++|+.|++++|.+..
T Consensus 171 ~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 171 NLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp TCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred CCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 66777777777776663322 556666777777766665332 35566666666666666544
No 91
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.82 E-value=2.8e-20 Score=167.97 Aligned_cols=205 Identities=20% Similarity=0.241 Sum_probs=140.3
Q ss_pred CCCcCEEEccCccccCCCCccc--cCCCcccEEEeeCccccccCh----hhhcccccccEEecccCccCCCccccccccC
Q 039967 212 LKSLSALGLHINQLSGVIPSSI--GNLSSLRALYLYNNGLYSFVP----EEIRYLTSLSELELCTNHLSGVIPHSIGNLT 285 (445)
Q Consensus 212 l~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 285 (445)
+++|++|++++|.+....+..+ ..+++|++|++++|.+....+ ..+..+++|++|++++|.+....+..+..++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 4568888888888776666665 677788888888887765322 2233567777777777777666666677777
Q ss_pred CccEEEcCCCcccCC----CCccccccCccceeeccCccccccccCCCcceEEcccCccccCCCc-cccCCCCCcEEECC
Q 039967 286 GLLLLNMCENHLSGP----IPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPP-EIGDSPKLQVLDLS 360 (445)
Q Consensus 286 ~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~ 360 (445)
+|++|++++|++.+. ....+..+++|++|++++|.+.... ..+. .+..+++|++|+++
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~-----------------~~~~~l~~~l~~L~~L~Ls 232 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPT-----------------GVCAALAAAGVQPHSLDLS 232 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHH-----------------HHHHHHHHHTCCCSSEECT
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchH-----------------HHHHHHHhcCCCCCEEECC
Confidence 777777777765421 1222345666666666666553111 0011 23566888888888
Q ss_pred CCccccccchhhccc---cCCCEEEccCCeeecccchhhcCCccCceeecCCCccccccCccccCCCCccEEeCCCCccc
Q 039967 361 SNNIVGEIPVQLGKL---FSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQFG 437 (445)
Q Consensus 361 ~~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 437 (445)
+|.+.+..|..+..+ ++|++|++++|++. .+|..+. ++|+.|++++|++++. + .+..+++|++|++++|+++
T Consensus 233 ~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~-~~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 233 HNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-P-QPDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp TSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-C-CTTSCCCCSCEECSSTTTS
T ss_pred CCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-c-hhhhCCCccEEECcCCCCC
Confidence 888886666666655 68888888888888 5566553 7899999999988854 2 2677889999999999887
Q ss_pred c
Q 039967 438 H 438 (445)
Q Consensus 438 ~ 438 (445)
+
T Consensus 308 ~ 308 (310)
T 4glp_A 308 V 308 (310)
T ss_dssp C
T ss_pred C
Confidence 5
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.81 E-value=1e-18 Score=152.62 Aligned_cols=179 Identities=26% Similarity=0.283 Sum_probs=106.6
Q ss_pred CCCcEEeccCCcCCCCCCcccCCCCCCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCCccEEEe
Q 039967 7 PHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLAL 86 (445)
Q Consensus 7 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l 86 (445)
...++++++++.+..++.. +. ++++.|++++|.+.+..+..+.++++|++|++++|.+.+..+..+
T Consensus 14 ~~~~~l~~~~~~l~~~p~~-~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~----------- 79 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSG-IP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVF----------- 79 (251)
T ss_dssp GGGTEEECTTCCCSSCCSC-CC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT-----------
T ss_pred CCCeEEecCCCCccccCCC-CC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHh-----------
Confidence 3567888888877766433 32 578888888888887777778888888888888887765444334
Q ss_pred cCcccccccceEEecCCcCCCCccccccCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCC
Q 039967 87 CHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKS 166 (445)
Q Consensus 87 ~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 166 (445)
..+++|++|++++|.++...+..|..+++|++|++++|.+....+..|..+++
T Consensus 80 ---------------------------~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 132 (251)
T 3m19_A 80 ---------------------------DDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTK 132 (251)
T ss_dssp ---------------------------TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred ---------------------------ccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCc
Confidence 44445555555555555444444455555555555555554333334455555
Q ss_pred cCEEeCCCccccccccccccCCCCCcEEEccCCccCCCCCccccCCCCcCEEEccCcccc
Q 039967 167 LLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLS 226 (445)
Q Consensus 167 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 226 (445)
|+.|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.+++++|.+.
T Consensus 133 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 133 LKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred ccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence 555555555555433334555555555555555555444445555566666666665553
No 93
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.80 E-value=3.9e-21 Score=179.36 Aligned_cols=188 Identities=23% Similarity=0.259 Sum_probs=97.2
Q ss_pred ccCCCCCcEEEccCCcccC----CCCccccCCCCCceEEeccCccccccCcc----ccCC---------CCcCEEeCCCc
Q 039967 113 LGNLNSLSTMDLSQNQFSG----SIPLSLGNLSNLDKLYLYSNSFSGSIPSI----IGNL---------KSLLQLDLSEN 175 (445)
Q Consensus 113 ~~~~~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~----~~~l---------~~L~~L~l~~~ 175 (445)
+..+++|++|++++|.++. .++..+..+++|++|++++|.+....+.. +..+ ++|++|++++|
T Consensus 90 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n 169 (386)
T 2ca6_A 90 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN 169 (386)
T ss_dssp HTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred HhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC
Confidence 3556666666666666654 23445556666666666666654222222 2222 66666666666
Q ss_pred cccc-ccc---ccccCCCCCcEEEccCCccCC-----CCCccccCCCCcCEEEccCcccc----CCCCccccCCCcccEE
Q 039967 176 QLIG-SIP---LSFGNLSSLTLMSLFNNSLSG-----SLPPILGNLKSLSALGLHINQLS----GVIPSSIGNLSSLRAL 242 (445)
Q Consensus 176 ~~~~-~~~---~~l~~l~~L~~L~l~~~~~~~-----~~~~~~~~l~~L~~L~l~~~~~~----~~~~~~~~~~~~L~~L 242 (445)
.+.. ..+ ..+..+++|++|.+++|.+.. ..+..+..+++|+.|++++|.+. ...+..+..+++|+.|
T Consensus 170 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L 249 (386)
T 2ca6_A 170 RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLREL 249 (386)
T ss_dssp CCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEE
T ss_pred CCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEE
Confidence 6542 222 234455666666666665541 11224455566666666666553 1223344555566666
Q ss_pred EeeCcccccc----Chhhhc--ccccccEEecccCccCC----Cccccc-cccCCccEEEcCCCcccCC
Q 039967 243 YLYNNGLYSF----VPEEIR--YLTSLSELELCTNHLSG----VIPHSI-GNLTGLLLLNMCENHLSGP 300 (445)
Q Consensus 243 ~l~~~~~~~~----~~~~~~--~~~~L~~L~l~~~~~~~----~~~~~l-~~~~~L~~L~l~~~~~~~~ 300 (445)
++++|.+... .+..+. .+++|+.|++++|.+.. ..+..+ ..+++|++|++++|.+.+.
T Consensus 250 ~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 250 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp ECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred ECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence 6666655432 122222 15556666666665553 123333 3345666666666655543
No 94
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.79 E-value=9.8e-19 Score=157.87 Aligned_cols=225 Identities=20% Similarity=0.213 Sum_probs=168.1
Q ss_pred CCcCEEeCCCcccccccc---ccccCCCCCcEEEccCCccCCCCCccc--cCCCCcCEEEccCccccCCCC----ccccC
Q 039967 165 KSLLQLDLSENQLIGSIP---LSFGNLSSLTLMSLFNNSLSGSLPPIL--GNLKSLSALGLHINQLSGVIP----SSIGN 235 (445)
Q Consensus 165 ~~L~~L~l~~~~~~~~~~---~~l~~l~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~----~~~~~ 235 (445)
..++.+.+.++.+..... ..+..+++|++|++.+|.+....+..+ ..+++|++|++++|.+....+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 346667776665432110 012245779999999999988888777 889999999999999875333 23456
Q ss_pred CCcccEEEeeCccccccChhhhcccccccEEecccCccCCC--c--cccccccCCccEEEcCCCcccCCCCc----cccc
Q 039967 236 LSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGV--I--PHSIGNLTGLLLLNMCENHLSGPIPK----SFKN 307 (445)
Q Consensus 236 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~--~~~l~~~~~L~~L~l~~~~~~~~~~~----~~~~ 307 (445)
+++|++|++++|.+....+..+..+++|++|++++|.+... . ...+..+++|++|++++|.+.. .+. .+..
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~ 222 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAA 222 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhc
Confidence 89999999999999888888889999999999999987532 1 2234678899999999998862 222 2456
Q ss_pred cCccceeeccCccccccccCCCcceEEcccCccccCCCccccCC---CCCcEEECCCCccccccchhhccccCCCEEEcc
Q 039967 308 LTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDS---PKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILN 384 (445)
Q Consensus 308 ~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 384 (445)
+++|++|++++|.+. +..|..+..+ ++|++|++++|.++ .+|..+. ++|+.|+++
T Consensus 223 l~~L~~L~Ls~N~l~-------------------~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls 280 (310)
T 4glp_A 223 GVQPHSLDLSHNSLR-------------------ATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLS 280 (310)
T ss_dssp TCCCSSEECTTSCCC-------------------CCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECC
T ss_pred CCCCCEEECCCCCCC-------------------ccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECC
Confidence 677777777777654 3334444444 78999999999998 5565553 799999999
Q ss_pred CCeeecccchhhcCCccCceeecCCCcccc
Q 039967 385 LNQLSGGMPLELGSLIELQYLDLSTNKLKS 414 (445)
Q Consensus 385 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 414 (445)
+|++.+. |. +..+++|+.|++++|+++.
T Consensus 281 ~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 281 SNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp SCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred CCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 9999843 43 6778999999999999874
No 95
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.77 E-value=2.9e-18 Score=145.30 Aligned_cols=195 Identities=24% Similarity=0.212 Sum_probs=124.4
Q ss_pred CEEEccCccccCCCCccccCCCcccEEEeeCccccccChhhhcccccccEEecccCccCCCccccccccCCccEEEcCCC
Q 039967 216 SALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCEN 295 (445)
Q Consensus 216 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 295 (445)
+.++.+++.+... +.. ..+++++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~~~-p~~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRTSV-PTG--IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCSSC-CSC--CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCccCC-CCC--CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 3455555544422 222 2346777777777766655555666677777777777666555555566667777777777
Q ss_pred cccCCCCccccccCccceeeccCccccccccCCCcceEEcccCccccCCCccccCCCCCcEEECCCCccccccchhhccc
Q 039967 296 HLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKL 375 (445)
Q Consensus 296 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 375 (445)
.+.+..+..+..+++|+.|++++|.+. ...+..+..+++|++|++++|.+++..+..+..+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~-------------------~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l 147 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQ-------------------SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRL 147 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCC-------------------CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCc-------------------ccCHhHhccCCcCCEEECCCCccceeCHHHhccC
Confidence 666444444555566666655555443 3344456777888888888888876666667778
Q ss_pred cCCCEEEccCCeeecccchhhcCCccCceeecCCCccccccCccccCCCCccEEeCCCCcccccCCCC
Q 039967 376 FSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQFGHKILVE 443 (445)
Q Consensus 376 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~ 443 (445)
++|+.|++++|++. +.+++|+.|++++|++++..|..+..++. ++..|...+..++.
T Consensus 148 ~~L~~L~l~~N~~~-------~~~~~l~~L~~~~n~~~g~ip~~~~~l~~----~~~~C~~~~~~~~~ 204 (208)
T 2o6s_A 148 TSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGSVAP----DSAKCSGSGKPVRS 204 (208)
T ss_dssp TTCCEEECCSCCBC-------CCTTTTHHHHHHHHHCTTTBBCTTSSBCT----TCSBBTTTCCBGGG
T ss_pred CCccEEEecCCCee-------cCCCCHHHHHHHHHhCCceeeccCccccC----CccccccCCCccee
Confidence 88888888888665 24567888888888888777777766655 55556555554443
No 96
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.77 E-value=8.8e-18 Score=142.34 Aligned_cols=179 Identities=26% Similarity=0.246 Sum_probs=103.9
Q ss_pred EEEccCCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCccccccChhhhcccccccEEecccCc
Q 039967 193 LMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNH 272 (445)
Q Consensus 193 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 272 (445)
.++..++.++ ..|..+ .++++.|+++++.+.......+..+++|++|++++|.+....+..+..+++|++|++++|.
T Consensus 11 ~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 11 TVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp EEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 4444444444 223222 2466666666666664444455666667777776666665555555666666777776666
Q ss_pred cCCCccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCccccccccCCCcceEEcccCccccCCCccccCCC
Q 039967 273 LSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSP 352 (445)
Q Consensus 273 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 352 (445)
+....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+. +..+..+..++
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-------------------~~~~~~~~~l~ 148 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-------------------SVPDGVFDRLT 148 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-------------------CCCTTTTTTCT
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccc-------------------eeCHHHhccCC
Confidence 66554455566666777777666666444444555555555555555443 22333455566
Q ss_pred CCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCCc
Q 039967 353 KLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLI 400 (445)
Q Consensus 353 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 400 (445)
+|++|++++|++. ..+++|+.|.+..|.+.+.+|..++.++
T Consensus 149 ~L~~L~l~~N~~~-------~~~~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 149 SLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp TCCEEECCSCCBC-------CCTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred CccEEEecCCCee-------cCCCCHHHHHHHHHhCCceeeccCcccc
Confidence 6677777666554 2345666666666666666666555443
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.75 E-value=2.8e-17 Score=150.91 Aligned_cols=241 Identities=20% Similarity=0.204 Sum_probs=149.2
Q ss_pred ceEEeccCccccccCccccCCCCcCEEeCCCccccccccccccCCCCCcEEEccCCccCCCCC-ccccCCCCcCEE-Ecc
Q 039967 144 DKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLP-PILGNLKSLSAL-GLH 221 (445)
Q Consensus 144 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L-~l~ 221 (445)
+.+..++++++ .+|..+ .+++++|++++|.+..+.+..|.++++|++|++++|.+.+..+ ..|.+++++.++ ...
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 45666777766 556554 3578888888888775555567888888888888887754333 456677776654 444
Q ss_pred CccccCCCCccccCCCcccEEEeeCccccccChhhhcccccccEEecccC-ccCCCcccccccc-CCccEEEcCCCcccC
Q 039967 222 INQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTN-HLSGVIPHSIGNL-TGLLLLNMCENHLSG 299 (445)
Q Consensus 222 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~~-~~L~~L~l~~~~~~~ 299 (445)
.+.+....+..|..+++|+++++++|.+....+..+....++..+++.++ .+.......+..+ ..++.|++++|++..
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 56666555667777778888888877776655545545556666666543 3433333334333 346667777776663
Q ss_pred CCCccccccCccceeeccCccccccccCCCcceEEcccCccccCCCccccCCCCCcEEECCCCccccccchhhccccCCC
Q 039967 300 PIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLN 379 (445)
Q Consensus 300 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 379 (445)
..+..| ..++|+++.+.++ +.+....+..+..+++|++|++++|.++...+.. +..|+
T Consensus 169 i~~~~f-~~~~L~~l~l~~~------------------n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~ 226 (350)
T 4ay9_X 169 IHNSAF-NGTQLDELNLSDN------------------NNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLK 226 (350)
T ss_dssp ECTTSS-TTEEEEEEECTTC------------------TTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCC
T ss_pred CChhhc-cccchhHHhhccC------------------CcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccch
Confidence 322222 2344555554432 2233333456778888888888888887444333 45566
Q ss_pred EEEccCCeeecccchhhcCCccCceeecCCC
Q 039967 380 KLILNLNQLSGGMPLELGSLIELQYLDLSTN 410 (445)
Q Consensus 380 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 410 (445)
+|.+.++.....+| .+..+++|+.+++.++
T Consensus 227 ~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 227 KLRARSTYNLKKLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp EEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred HhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence 66666665544556 4667788888888654
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.74 E-value=1e-16 Score=147.10 Aligned_cols=207 Identities=17% Similarity=0.190 Sum_probs=111.2
Q ss_pred ceEEecCCcCCCCccccccCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCcccccc-CccccCCCCcCE-EeCC
Q 039967 96 ANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSI-PSIIGNLKSLLQ-LDLS 173 (445)
Q Consensus 96 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~-L~l~ 173 (445)
++++.+++.++ .+|..+ .+++++|++++|.++...+..|.++++|++|++++|.+.... +.+|.++++++. +...
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 34555555544 344433 246677777777776444456677777777777777654333 335566666554 3344
Q ss_pred CccccccccccccCCCCCcEEEccCCccCCCCCccccCCCCcCEEEccC-ccccCCCCccccCCC-cccEEEeeCccccc
Q 039967 174 ENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHI-NQLSGVIPSSIGNLS-SLRALYLYNNGLYS 251 (445)
Q Consensus 174 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~ 251 (445)
++.+....+..|..+++|++|++.+|.+....+..+.....+..+++.. +.+.......|..+. .++.|++++|.+..
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 4555555555666666777777766666644444444445555565544 233333333444432 45666666666655
Q ss_pred cChhhhcccccccEEeccc-CccCCCccccccccCCccEEEcCCCcccCCCCcccc
Q 039967 252 FVPEEIRYLTSLSELELCT-NHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFK 306 (445)
Q Consensus 252 ~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 306 (445)
.....+ ...+++.+++.+ +.+.......+..+++|++|++++|++....+..+.
T Consensus 169 i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~ 223 (350)
T 4ay9_X 169 IHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLE 223 (350)
T ss_dssp ECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCT
T ss_pred CChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhc
Confidence 433333 234556666653 334433334555666666666666665533333333
No 99
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.72 E-value=4.2e-17 Score=145.41 Aligned_cols=170 Identities=28% Similarity=0.444 Sum_probs=118.8
Q ss_pred ccCCCcccEEEeeCccccccChhhhcccccccEEecccCccCCCccccccccCCccEEEcCCCcccCCCCccccccCccc
Q 039967 233 IGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVE 312 (445)
Q Consensus 233 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 312 (445)
+..+++|+.|++++|.+... + .+..+++|+.|++++|.+....+ +..+++|++|++++|.+.+ . ..+..+++|+
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~ 115 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-L-SSLKDLKKLK 115 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCC
T ss_pred hhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-C-hhhccCCCCC
Confidence 34567888888888887764 2 36778888999998888875443 7788888999998888774 2 3377788888
Q ss_pred eeeccCcccccc---ccCCCcceEEcccCccccCCCccccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeee
Q 039967 313 RVLLNQNNLSGK---VNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLS 389 (445)
Q Consensus 313 ~L~l~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 389 (445)
.|++++|.+.+. ..+++|+.|++++|++... ..+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.
T Consensus 116 ~L~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 116 SLSLEHNGISDINGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp EEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred EEECCCCcCCCChhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCC
Confidence 888888876643 2356677777777766543 456666777777777777664433 666777777777777665
Q ss_pred cccchhhcCCccCceeecCCCcccc
Q 039967 390 GGMPLELGSLIELQYLDLSTNKLKS 414 (445)
Q Consensus 390 ~~~~~~~~~~~~L~~L~l~~~~~~~ 414 (445)
+ ++ .+..+++|+.|++++|++..
T Consensus 192 ~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 192 D-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp B-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred C-Ch-hhccCCCCCEEECcCCcccC
Confidence 3 23 36666777777777776664
No 100
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.72 E-value=7.2e-17 Score=137.62 Aligned_cols=134 Identities=25% Similarity=0.282 Sum_probs=71.8
Q ss_pred CCccEEEcCCCcccCCCCccccccCccceeeccCccccccccCCCcceEEcccCccccCCCccccCCCCCcEEECCCCcc
Q 039967 285 TGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNI 364 (445)
Q Consensus 285 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 364 (445)
+.++.|++++|.+.+..+..|..+++|+.|++++|.+. ...+..+..+++|++|++++|.+
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~-------------------~~~~~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-------------------ELAPDAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCC-------------------EECTTTTTTCSSCCEEECCSSCC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCC-------------------CcCHHHhhCCcCCCEEECCCCcC
Confidence 45555555555555444444555555555555554433 22334455555555555555555
Q ss_pred ccccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCccccccCccccCCCCccEEeCCCCccc
Q 039967 365 VGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQFG 437 (445)
Q Consensus 365 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 437 (445)
+...+..|..+++|+.|++++|++.+..+..|..+++|+.|++++|+++...+..|..+++|++|++++|+|.
T Consensus 93 ~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 93 TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 5444444555555555555555555444555555555666666666555444445555555666666665554
No 101
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.72 E-value=2.9e-17 Score=137.76 Aligned_cols=153 Identities=18% Similarity=0.255 Sum_probs=107.6
Q ss_pred ccccccEEecccCccCCCccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCccccccccCCCcceEEcccC
Q 039967 259 YLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVN 338 (445)
Q Consensus 259 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~ 338 (445)
.+++|+.|++++|.+.. .+ .+..+++|++|++++|.+.. ...+.. +++|+.|++++|
T Consensus 42 ~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~-------------------l~~L~~L~l~~n 98 (197)
T 4ezg_A 42 QMNSLTYITLANINVTD-LT-GIEYAHNIKDLTINNIHATN--YNPISG-------------------LSNLERLRIMGK 98 (197)
T ss_dssp HHHTCCEEEEESSCCSC-CT-TGGGCTTCSEEEEESCCCSC--CGGGTT-------------------CTTCCEEEEECT
T ss_pred hcCCccEEeccCCCccC-hH-HHhcCCCCCEEEccCCCCCc--chhhhc-------------------CCCCCEEEeECC
Confidence 34455555555555542 12 34455555555555553321 123333 445555555556
Q ss_pred ccccCCCccccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCe-eecccchhhcCCccCceeecCCCccccccC
Q 039967 339 NISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQ-LSGGMPLELGSLIELQYLDLSTNKLKSSIP 417 (445)
Q Consensus 339 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 417 (445)
++....+..+..+++|++|++++|.+++..+..+..+++|+.|++++|. +. .++ .+..+++|+.|++++|.+.+..
T Consensus 99 ~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~- 175 (197)
T 4ezg_A 99 DVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYR- 175 (197)
T ss_dssp TCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCT-
T ss_pred ccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChH-
Confidence 6655566778899999999999999998788889999999999999998 55 455 6889999999999999998533
Q ss_pred ccccCCCCccEEeCCCCcccc
Q 039967 418 KSIGNLLRLCYLDLSNNQFGH 438 (445)
Q Consensus 418 ~~~~~~~~L~~l~l~~~~~~~ 438 (445)
.+..+++|++|++.+|++.+
T Consensus 176 -~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 176 -GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp -TGGGCSSCCEEEECBC----
T ss_pred -HhccCCCCCEEEeeCcccCC
Confidence 78899999999999999874
No 102
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.72 E-value=6.3e-16 Score=144.29 Aligned_cols=238 Identities=12% Similarity=0.061 Sum_probs=118.7
Q ss_pred ccccCCCCCceEEeccCccccccCccccCCCCcCEEeCCCccccccccccccCCCCCcEEEccCCccCCCCCccccCCCC
Q 039967 135 LSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKS 214 (445)
Q Consensus 135 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 214 (445)
.+|..+.+|+.+.+.++... ....+|.++.+|+.+.+..+ +..+...++..++.|+.+.+..+... ..........
T Consensus 156 ~aF~~c~~L~~i~l~~~~~~-I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~ 231 (394)
T 4fs7_A 156 EAFATCESLEYVSLPDSMET-LHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKTG 231 (394)
T ss_dssp TTTTTCTTCCEEECCTTCCE-ECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCC
T ss_pred hhhcccCCCcEEecCCccce-eccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhcccCC
Confidence 34444455555554433211 33344445555555555433 22233334444444444444333221 1111222344
Q ss_pred cCEEEccCccccCCCCccccCCCcccEEEeeCccccccChhhhcccccccEEecccCccCCCccccccccCCccEEEcCC
Q 039967 215 LSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCE 294 (445)
Q Consensus 215 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 294 (445)
|+.+.+.... .......+..+..++.+.+..+.. ......+..+..++.+......+ ....+..+.+|+.+.+.+
T Consensus 232 l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~ 306 (394)
T 4fs7_A 232 VKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKL-RIGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLD 306 (394)
T ss_dssp CCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTC-EECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECT
T ss_pred CceEEECCCc-eecccccccccccceeEEcCCCcc-eeeccccccccccceeccCceee---cccccccccccccccccc
Confidence 5555543322 112333455555666655554322 22334455555555555543322 223455566666666654
Q ss_pred CcccCCCCccccccCccceeeccCccccccccCCCcceEEcccCccccCCCccccCCCCCcEEECCCCccccccchhhcc
Q 039967 295 NHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGK 374 (445)
Q Consensus 295 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 374 (445)
+ +......+|.+|.+|+.+++..+ + ......++.+|.+|+.+++..+ ++.....+|.+
T Consensus 307 ~-i~~I~~~aF~~c~~L~~i~lp~~-v-------------------~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~ 364 (394)
T 4fs7_A 307 S-VKFIGEEAFESCTSLVSIDLPYL-V-------------------EEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQG 364 (394)
T ss_dssp T-CCEECTTTTTTCTTCCEECCCTT-C-------------------CEECTTTTTTCTTCCEECCCTT-CCEECTTTBTT
T ss_pred c-cceechhhhcCCCCCCEEEeCCc-c-------------------cEEhHHhccCCCCCCEEEECcc-ccEehHHHhhC
Confidence 4 33234556777777777766432 1 1123346677777887777655 44456667778
Q ss_pred ccCCCEEEccCCeeecccchhhcCCccCcee
Q 039967 375 LFSLNKLILNLNQLSGGMPLELGSLIELQYL 405 (445)
Q Consensus 375 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 405 (445)
|++|+.+.+..+ +. ....+|.++++|+.+
T Consensus 365 C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 365 CINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp CTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred CCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 888888887654 22 334567777777654
No 103
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.72 E-value=4.5e-17 Score=145.23 Aligned_cols=172 Identities=25% Similarity=0.374 Sum_probs=93.6
Q ss_pred cCCCCCCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCCccEEEecCcccccccceEEecCCcCC
Q 039967 27 IGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLF 106 (445)
Q Consensus 27 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~L~~l~l~~~~~~ 106 (445)
...+++|+.|++++|.+.+. + .+..+++|+.|++++|.+.+..+ +.++++|+.+++++| .+.
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n--------------~l~ 103 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDEN--------------KVK 103 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS--------------CCC
T ss_pred hhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCC--------------cCC
Confidence 34567788888888877644 2 46677788888888777763222 444444333333332 222
Q ss_pred CCccccccCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcCEEeCCCcccccccccccc
Q 039967 107 NSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFG 186 (445)
Q Consensus 107 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~ 186 (445)
. ++ .+..+++|++|++++|.++.. ..+..+++|++|++++|.+... ..+..+++|+.|++++|.+....+ +.
T Consensus 104 ~-~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~ 175 (291)
T 1h6t_A 104 D-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LA 175 (291)
T ss_dssp C-GG-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GT
T ss_pred C-Ch-hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hc
Confidence 1 12 255666666666666666532 3455556666666666655422 345555666666666655543322 55
Q ss_pred CCCCCcEEEccCCccCCCCCccccCCCCcCEEEccCcccc
Q 039967 187 NLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLS 226 (445)
Q Consensus 187 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 226 (445)
.+++|+.|++++|.+... + .+..+++|+.|++++|.+.
T Consensus 176 ~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 176 GLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp TCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEE
T ss_pred CCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCccc
Confidence 555555555555555422 1 2444555555555555443
No 104
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.71 E-value=1e-16 Score=136.71 Aligned_cols=154 Identities=19% Similarity=0.245 Sum_probs=97.2
Q ss_pred cEEecccCccCCCccccccccCCccEEEcCCCcccCCCC-ccccccCccceeeccCccccccccCCCcceEEcccCcccc
Q 039967 264 SELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIP-KSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISE 342 (445)
Q Consensus 264 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~ 342 (445)
+.++++++.+... +..+ ...++.|++++|.+.+..+ ..|..+++|+.|++++|.+. .
T Consensus 14 ~~l~~s~n~l~~i-P~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~-------------------~ 71 (220)
T 2v70_A 14 TTVDCSNQKLNKI-PEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-------------------D 71 (220)
T ss_dssp TEEECCSSCCSSC-CSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCC-------------------E
T ss_pred CEeEeCCCCcccC-ccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCC-------------------E
Confidence 3555555555432 2222 2345666666666654422 34555566666655555443 3
Q ss_pred CCCccccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCccccccCccccC
Q 039967 343 SIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGN 422 (445)
Q Consensus 343 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 422 (445)
..+..+..+++|++|++++|.+++..+..|..+++|++|++++|++.+..+..+..+++|+.|++++|+++...+..|..
T Consensus 72 i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 151 (220)
T 2v70_A 72 IEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDT 151 (220)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTT
T ss_pred ECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcC
Confidence 33445666777777777777777666666777777777777777777665666777777777777777777666677777
Q ss_pred CCCccEEeCCCCccccc
Q 039967 423 LLRLCYLDLSNNQFGHK 439 (445)
Q Consensus 423 ~~~L~~l~l~~~~~~~~ 439 (445)
+++|++|++++|+|...
T Consensus 152 l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 152 LHSLSTLNLLANPFNCN 168 (220)
T ss_dssp CTTCCEEECCSCCEECS
T ss_pred CCCCCEEEecCcCCcCC
Confidence 77777777777777643
No 105
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.71 E-value=8.2e-17 Score=155.45 Aligned_cols=185 Identities=25% Similarity=0.342 Sum_probs=120.9
Q ss_pred CcCEEEccCccccCCCCccccCCCcccEEEeeCccccccChhhhcccccccEEecccCccCCCccccccccCCccEEEcC
Q 039967 214 SLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMC 293 (445)
Q Consensus 214 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 293 (445)
+++.|+++++.+.. .+..+ .++|+.|++++|.+..+ + ..+++|++|++++|.+.. .+. +.. +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~~i-p---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALISL-P---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCSCC-C---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCccc-c---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 88999999988874 44433 37899999999988764 3 456889999999988875 343 443 89999999
Q ss_pred CCcccCCCCccccccCccceeeccCcccccccc-CCCcceEEcccCccccCCCccccCCCCCcEEECCCCccccccchhh
Q 039967 294 ENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVN-VPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQL 372 (445)
Q Consensus 294 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 372 (445)
+|.+.+ +|. .+++|+.|++++|.+...+. +++|+.|++++|+++. .+. +. ++|+.|++++|.++ .+|. +
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~ 198 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTMLPELPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-V 198 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-C
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCcCCCcCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-H
Confidence 998885 444 56788888888887764332 4466666666666654 333 33 66666666666665 3333 3
Q ss_pred ccccCC-------CEEEccCCeeecccchhhcCCccCceeecCCCccccccCccccC
Q 039967 373 GKLFSL-------NKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGN 422 (445)
Q Consensus 373 ~~~~~L-------~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 422 (445)
.. +| +.|++++|.+. .+|..+..+++|+.|++++|++++..|..+..
T Consensus 199 ~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 199 PV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp C----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred HH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 32 44 66666666665 45555555666666666666666555554433
No 106
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.71 E-value=2.3e-16 Score=135.46 Aligned_cols=152 Identities=23% Similarity=0.323 Sum_probs=91.0
Q ss_pred cEEecccCccCCCccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCccccccccCCCcceEEcccCccccC
Q 039967 264 SELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISES 343 (445)
Q Consensus 264 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~ 343 (445)
+.++.+++.+.. .+..+ .++|++|++++|.+.+..+..|..+++|+.|++++|.+. ..
T Consensus 22 ~~v~c~~~~l~~-ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-------------------~i 79 (229)
T 3e6j_A 22 TTVDCRSKRHAS-VPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-------------------AL 79 (229)
T ss_dssp TEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-------------------CC
T ss_pred CEeEccCCCcCc-cCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-------------------Cc
Confidence 455555555542 22222 266777777777766555666666666666666666543 22
Q ss_pred CCccccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCccccccCccccCC
Q 039967 344 IPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNL 423 (445)
Q Consensus 344 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 423 (445)
.+..+..+++|++|++++|.+++..+..|..+++|+.|++++|++. .+|..+..+++|+.|++++|++....+..|..+
T Consensus 80 ~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 158 (229)
T 3e6j_A 80 PVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRL 158 (229)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTC
T ss_pred ChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCC
Confidence 2334455666666666666666555555566666666666666666 555556666666666666666665555556666
Q ss_pred CCccEEeCCCCcccc
Q 039967 424 LRLCYLDLSNNQFGH 438 (445)
Q Consensus 424 ~~L~~l~l~~~~~~~ 438 (445)
++|++|++.+|+|..
T Consensus 159 ~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 159 SSLTHAYLFGNPWDC 173 (229)
T ss_dssp TTCCEEECTTSCBCT
T ss_pred CCCCEEEeeCCCccC
Confidence 666666666666654
No 107
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.70 E-value=1.6e-17 Score=151.11 Aligned_cols=288 Identities=12% Similarity=0.031 Sum_probs=161.6
Q ss_pred CCCCcEEEccCCcccCCCCccccC-CCCCceEEeccCccccccCccccCCCCcCEEeCCCccccccccccccC-------
Q 039967 116 LNSLSTMDLSQNQFSGSIPLSLGN-LSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGN------- 187 (445)
Q Consensus 116 ~~~L~~L~l~~~~~~~~~~~~~~~-l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~------- 187 (445)
+.+++.|.++++--. ..-..+.. +++|+.|++++|.+.. .....+.++.++.+....+. +.+.+|..
T Consensus 24 ~~~l~~L~l~g~i~~-~~~~~l~~~l~~L~~LdLs~n~i~~-~~~~~~~~~~~~~~~~~~~~---I~~~aF~~~~~~~~~ 98 (329)
T 3sb4_A 24 ANSITHLTLTGKLNA-EDFRHLRDEFPSLKVLDISNAEIKM-YSGKAGTYPNGKFYIYMANF---VPAYAFSNVVNGVTK 98 (329)
T ss_dssp HHHCSEEEEEEEECH-HHHHHHHHSCTTCCEEEEEEEEECC-EEESSSSSGGGCCEEECTTE---ECTTTTEEEETTEEE
T ss_pred hCceeEEEEeccccH-HHHHHHHHhhccCeEEecCcceeEE-ecCccccccccccccccccc---cCHHHhccccccccc
Confidence 346777777653211 11112222 5677777777776651 11111122223344444432 22234444
Q ss_pred -CCCCcEEEccCCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCccccccChhhhcccccccEE
Q 039967 188 -LSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSEL 266 (445)
Q Consensus 188 -l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 266 (445)
+++|+.+.+.. .+..+....|..+++|+.+++..+.+......+|..+.++..+.........
T Consensus 99 g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~--------------- 162 (329)
T 3sb4_A 99 GKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYR--------------- 162 (329)
T ss_dssp ECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHH---------------
T ss_pred ccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhh---------------
Confidence 66666666666 5554555556666666666666665554555555555444444333211100
Q ss_pred ecccCccCCCccccccccCCcc-EEEcCCCcc-cCCCCccccccCccceeeccCcccccc-----ccCCCcceEEcccCc
Q 039967 267 ELCTNHLSGVIPHSIGNLTGLL-LLNMCENHL-SGPIPKSFKNLTSVERVLLNQNNLSGK-----VNVPKLGTFIISVNN 339 (445)
Q Consensus 267 ~l~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~-----~~~~~L~~L~l~~~~ 339 (445)
.........+..+..|+ .+.+..... ............++..+.+.+.-.... ..+++|+.+++.+++
T Consensus 163 -----~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~ 237 (329)
T 3sb4_A 163 -----FKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTN 237 (329)
T ss_dssp -----TSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBC
T ss_pred -----ccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCC
Confidence 00001111222223333 222221110 000000000122233333332211100 015677777777777
Q ss_pred cccCCCccccCCCCCcEEECCCCccccccchhhccccCCC-EEEccCCeeecccchhhcCCccCceeecCCCccccccCc
Q 039967 340 ISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLN-KLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPK 418 (445)
Q Consensus 340 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 418 (445)
+......+|..|++|+.+++.++ ++...+.+|.+|++|+ .+.+.+ .+....+.+|.++++|+.++++++++..+.+.
T Consensus 238 i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~ 315 (329)
T 3sb4_A 238 ATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDE 315 (329)
T ss_dssp CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTT
T ss_pred cceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchh
Confidence 77667778999999999999988 6667888999999999 999999 67656678999999999999999999988889
Q ss_pred cccCCCCccEEeC
Q 039967 419 SIGNLLRLCYLDL 431 (445)
Q Consensus 419 ~~~~~~~L~~l~l 431 (445)
+|.+|++|+.|+.
T Consensus 316 aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 316 LFGNGVPSKLIYK 328 (329)
T ss_dssp TTCTTCCCCEEEC
T ss_pred hhcCCcchhhhcc
Confidence 9999999999874
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.69 E-value=3e-16 Score=153.18 Aligned_cols=177 Identities=27% Similarity=0.396 Sum_probs=135.2
Q ss_pred ccCCCcccEEEeeCccccccChhhhcccccccEEecccCccCCCccccccccCCccEEEcCCCcccCCCCccccccCccc
Q 039967 233 IGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVE 312 (445)
Q Consensus 233 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 312 (445)
+..+++|+.|++++|.+.... .+..+++|+.|++++|.+....+ +..+++|+.|++++|.+.+ ++ .+..+++|+
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~ 112 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLK 112 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCC
T ss_pred hhcCCCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCC
Confidence 445678888999988887642 47788999999999998875543 7888999999999998874 33 578888999
Q ss_pred eeeccCcccccc---ccCCCcceEEcccCccccCCCccccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeee
Q 039967 313 RVLLNQNNLSGK---VNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLS 389 (445)
Q Consensus 313 ~L~l~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 389 (445)
.|++++|.+.+. ..+++|+.|++++|.+... ..+..+++|+.|++++|.+.+..+ +..+++|+.|+|++|.+.
T Consensus 113 ~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~ 188 (605)
T 1m9s_A 113 SLSLEHNGISDINGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 188 (605)
T ss_dssp EEECTTSCCCCCGGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred EEEecCCCCCCCccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCC
Confidence 999999887643 3477888888888887754 567778888888888888876555 777888888888888877
Q ss_pred cccchhhcCCccCceeecCCCccccccCcccc
Q 039967 390 GGMPLELGSLIELQYLDLSTNKLKSSIPKSIG 421 (445)
Q Consensus 390 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 421 (445)
+. ..+..+++|+.|+|++|++.......+.
T Consensus 189 ~l--~~l~~l~~L~~L~L~~N~l~~~p~~~~~ 218 (605)
T 1m9s_A 189 DL--RALAGLKNLDVLELFSQECLNKPINHQS 218 (605)
T ss_dssp BC--GGGTTCTTCSEEECCSEEEECCCCCCCS
T ss_pred CC--hHHccCCCCCEEEccCCcCcCCcccccc
Confidence 43 3577788888888888887754443333
No 109
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.69 E-value=9.6e-17 Score=147.91 Aligned_cols=91 Identities=33% Similarity=0.250 Sum_probs=43.1
Q ss_pred cccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchhh---cCCccCceeecCCCccccccCccccCC
Q 039967 347 EIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLEL---GSLIELQYLDLSTNKLKSSIPKSIGNL 423 (445)
Q Consensus 347 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~ 423 (445)
.+..+++|++|++++|.+....+..|..+++|+.|++++|++....+..+ ..+++|+.|+|++|++....+..+..+
T Consensus 107 ~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l 186 (361)
T 2xot_A 107 LFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKL 186 (361)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHS
T ss_pred HhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhc
Confidence 34444555555555555554444445555555555555555542222222 334555555555555554333444444
Q ss_pred CC--ccEEeCCCCccc
Q 039967 424 LR--LCYLDLSNNQFG 437 (445)
Q Consensus 424 ~~--L~~l~l~~~~~~ 437 (445)
+. ++.|++.+|+|.
T Consensus 187 ~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 187 PAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CHHHHTTEECCSSCEE
T ss_pred cHhhcceEEecCCCcc
Confidence 43 245555555543
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.68 E-value=2.4e-16 Score=153.89 Aligned_cols=187 Identities=25% Similarity=0.310 Sum_probs=152.1
Q ss_pred CcEEEccCCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCccccccChhhhcccccccEEeccc
Q 039967 191 LTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCT 270 (445)
Q Consensus 191 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 270 (445)
+..+.+..+.+.... ....++.|+.|+++++.+... ..+..+++|+.|++++|.+....+ +..+++|+.|++++
T Consensus 23 l~~l~l~~~~i~~~~--~~~~L~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHTTCSCTTSEE--CHHHHTTCCCCBCTTCCCCCC--TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCS
T ss_pred HHHHhccCCCccccc--chhcCCCCCEEECcCCCCCCC--hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcC
Confidence 333444555444322 245678999999999988743 257889999999999999887544 78899999999999
Q ss_pred CccCCCccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCcccccc---ccCCCcceEEcccCccccCCCcc
Q 039967 271 NHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGK---VNVPKLGTFIISVNNISESIPPE 347 (445)
Q Consensus 271 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~ 347 (445)
|.+... ..+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+. ..+++|+.|++++|.+.+..+
T Consensus 97 N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~-- 170 (605)
T 1m9s_A 97 NKIKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-- 170 (605)
T ss_dssp SCCCCC--TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCGG--
T ss_pred CCCCCC--hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCchh--
Confidence 998743 3688899999999999998853 4588999999999999988754 348899999999999986544
Q ss_pred ccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecc
Q 039967 348 IGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGG 391 (445)
Q Consensus 348 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 391 (445)
+..+++|+.|++++|.+.+. ..+..+++|+.|++++|++.+.
T Consensus 171 l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 171 LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 88999999999999999854 3688999999999999999744
No 111
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.68 E-value=6.2e-16 Score=131.83 Aligned_cols=152 Identities=20% Similarity=0.196 Sum_probs=87.0
Q ss_pred cEEeccCCcCCCCCCcccCCCCCCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCCccEEEecCc
Q 039967 10 VHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCHN 89 (445)
Q Consensus 10 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~ 89 (445)
+.++.+++.+..++.. +. ++++.|++++|.+....+..|..+++|+.|++++|.+....|..
T Consensus 14 ~~v~c~~~~l~~iP~~-l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~--------------- 75 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTN-LP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDA--------------- 75 (220)
T ss_dssp TEEECTTSCCSSCCSS-CC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTT---------------
T ss_pred CEEEcCCCCcCcCCCc-cC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHH---------------
Confidence 4566666666655332 22 46777777777776666666667777777777777665433444
Q ss_pred ccccccceEEecCCcCCCCccccccCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcCE
Q 039967 90 YFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQ 169 (445)
Q Consensus 90 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 169 (445)
|.++++|++|++++|.++...+..|..+++|++|++++|.+....+..|..+++|+.
T Consensus 76 -----------------------~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 132 (220)
T 2v9t_B 76 -----------------------FQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNL 132 (220)
T ss_dssp -----------------------TTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred -----------------------hhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCE
Confidence 445555555555555555433344455555555555555555444455555555555
Q ss_pred EeCCCccccccccccccCCCCCcEEEccCCccC
Q 039967 170 LDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLS 202 (445)
Q Consensus 170 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 202 (445)
|++++|.+....+..+..+++|+.|++.+|.+.
T Consensus 133 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 133 LSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred EECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 555555555444444555555666666555543
No 112
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.68 E-value=1.9e-15 Score=141.04 Aligned_cols=144 Identities=13% Similarity=0.070 Sum_probs=83.7
Q ss_pred cccccCCccEEEcCCCcccCCCCccccccCccceeeccCccccc--cccCCCcceEEcccCccccCCCccccCCCCCcEE
Q 039967 280 SIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSG--KVNVPKLGTFIISVNNISESIPPEIGDSPKLQVL 357 (445)
Q Consensus 280 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 357 (445)
.+..+..++.+.+..+... .....|..+..++.+......+.. ...+.+|+.+.+..+ +......++..|.+|+.+
T Consensus 248 ~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i 325 (394)
T 4fs7_A 248 VFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSI 325 (394)
T ss_dssp TTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEE
T ss_pred cccccccceeEEcCCCcce-eeccccccccccceeccCceeeccccccccccccccccccc-cceechhhhcCCCCCCEE
Confidence 3444444555554443222 233344445555544443332221 112344444444322 222344567788888888
Q ss_pred ECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCccccccCccccCCCCccEE
Q 039967 358 DLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYL 429 (445)
Q Consensus 358 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l 429 (445)
++.++ ++.....+|.+|++|+.+.+..+ +......+|.++++|+.+++..+- . ....+|.+|++|+.+
T Consensus 326 ~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~~-~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 326 DLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKRL-E-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp CCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGGG-G-GGGGGBCTTCEEEEE
T ss_pred EeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCCC-E-EhhheecCCCCCcEE
Confidence 88754 45456677888888888888766 544556778888888888886552 2 234578888888865
No 113
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.67 E-value=1.4e-15 Score=129.62 Aligned_cols=152 Identities=22% Similarity=0.227 Sum_probs=85.6
Q ss_pred cEEeccCCcCCCCCCcccCCCCCCcEEeccCcccCCCCC-ccccCCCCCcEEEecCcccccCCCcccccCCCccEEEecC
Q 039967 10 VHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIP-LEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCH 88 (445)
Q Consensus 10 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~ 88 (445)
++++++++.+..++. .+ ...++.|++++|.+....+ ..+..+++|+.|++++|.+.+..+.
T Consensus 14 ~~l~~s~n~l~~iP~-~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~--------------- 75 (220)
T 2v70_A 14 TTVDCSNQKLNKIPE-HI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEG--------------- 75 (220)
T ss_dssp TEEECCSSCCSSCCS-CC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTT---------------
T ss_pred CEeEeCCCCcccCcc-CC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHH---------------
Confidence 567777776665533 22 2345677777777665433 3466677777777777666543333
Q ss_pred cccccccceEEecCCcCCCCccccccCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcC
Q 039967 89 NYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLL 168 (445)
Q Consensus 89 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 168 (445)
.|..+++|++|++++|.++...+..|..+++|++|++++|.+....+..|..+++|+
T Consensus 76 -----------------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 132 (220)
T 2v70_A 76 -----------------------AFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVR 132 (220)
T ss_dssp -----------------------TTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCS
T ss_pred -----------------------HhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCC
Confidence 344555555555555555544444455555555555555555544445555555555
Q ss_pred EEeCCCccccccccccccCCCCCcEEEccCCccC
Q 039967 169 QLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLS 202 (445)
Q Consensus 169 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 202 (445)
.|++++|.+....|..+..+++|+.|++++|.+.
T Consensus 133 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 133 LLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp EEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred EEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 5555555555444555555555555555555554
No 114
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.65 E-value=2.7e-16 Score=143.11 Aligned_cols=231 Identities=13% Similarity=0.071 Sum_probs=154.2
Q ss_pred CCCCcEEeccCCcCC--------------------CCCCcccCC--------CCCCcEEeccCcccCCCCCccccCCCCC
Q 039967 6 FPHLVHLNLSFNILF--------------------GIIPPQIGN--------LSNLQYLDLGSNQLSGVIPLEIGHLNQL 57 (445)
Q Consensus 6 ~~~L~~L~l~~~~~~--------------------~~~~~~~~~--------~~~L~~L~l~~~~~~~~~~~~l~~~~~L 57 (445)
+++|++|+|++|.+. .++..+|.+ +++|+.++++. .+....+.+|.+|++|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L 126 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL 126 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence 678999999998877 445667778 89999999988 7777788889999999
Q ss_pred cEEEecCcccccCCCcccccCCCccEEEecCcccc--------------cccc-eEEecCCcCCCCcccc----ccCCCC
Q 039967 58 RILYFDVNQLHGSIPLEIGQLSLINVLALCHNYFV--------------CNLA-NFYLNNNSLFNSIPLV----LGNLNS 118 (445)
Q Consensus 58 ~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~--------------~~L~-~l~l~~~~~~~~~~~~----~~~~~~ 118 (445)
+.++++++.+....+..|..+..+..+........ ..++ .+.+.... .++.. -....+
T Consensus 127 ~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~ 203 (329)
T 3sb4_A 127 KICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMG---KLEDEIMKAGLQPRD 203 (329)
T ss_dssp CEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTC---CHHHHHHHTTCCGGG
T ss_pred ceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCC---cHHHHHhhcccCccc
Confidence 99999998877666777777776666654432110 1111 11111100 01110 011233
Q ss_pred CcEEEccCCcccCCCCccc-cCCCCCceEEeccCccccccCccccCCCCcCEEeCCCccccccccccccCCCCCc-EEEc
Q 039967 119 LSTMDLSQNQFSGSIPLSL-GNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLT-LMSL 196 (445)
Q Consensus 119 L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~-~L~l 196 (445)
+..+.+.+.-.. .....+ ..+++|+.+++.+|.+......+|.+|.+|+.+++.++ +..+.+.+|..+++|+ .+.+
T Consensus 204 ~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l 281 (329)
T 3sb4_A 204 INFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLEL 281 (329)
T ss_dssp CSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEE
T ss_pred cceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEE
Confidence 444444433111 111111 23678888888887777666667888888888888876 5556667788888888 8888
Q ss_pred cCCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEE
Q 039967 197 FNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALY 243 (445)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 243 (445)
.+ .+..+.+..|.++++|+.+++..+.+......+|.++++|+.++
T Consensus 282 ~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 282 PA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp CT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred cc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 77 56556667788888888888888877767777888888888775
No 115
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.65 E-value=4e-15 Score=127.65 Aligned_cols=151 Identities=29% Similarity=0.341 Sum_probs=90.8
Q ss_pred cEEeccCCcCCCCCCcccCCCCCCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCCccEEEecCc
Q 039967 10 VHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCHN 89 (445)
Q Consensus 10 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~ 89 (445)
+.++.+++.+..++.. + .++|++|++++|.+.+..+..+..+++|++|++++|.+..
T Consensus 22 ~~v~c~~~~l~~ip~~-~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~-------------------- 78 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAG-I--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGA-------------------- 78 (229)
T ss_dssp TEEECTTSCCSSCCSC-C--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--------------------
T ss_pred CEeEccCCCcCccCCC-C--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCC--------------------
Confidence 3455555554444321 1 1455555555555555545555555555555555555432
Q ss_pred ccccccceEEecCCcCCCCccccccCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcCE
Q 039967 90 YFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQ 169 (445)
Q Consensus 90 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 169 (445)
..+..+..+++|++|++++|.++...+..|..+++|++|++++|.+. .+|..+..+++|+.
T Consensus 79 ------------------i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~ 139 (229)
T 3e6j_A 79 ------------------LPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTH 139 (229)
T ss_dssp ------------------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSE
T ss_pred ------------------cChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCE
Confidence 22334566666777777777766555555666777777777777766 55666667777777
Q ss_pred EeCCCccccccccccccCCCCCcEEEccCCccC
Q 039967 170 LDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLS 202 (445)
Q Consensus 170 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 202 (445)
|++++|.+....+..+..+++|+.|++.+|.+.
T Consensus 140 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 140 LALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred EECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 777777766544455666777777777777665
No 116
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.65 E-value=9.9e-16 Score=141.11 Aligned_cols=176 Identities=26% Similarity=0.252 Sum_probs=105.7
Q ss_pred ceEEecCCcCCCCccccccCCCCCcEEEccCCcccCCCCcccc-CCCCCceEEeccCccccccCccccCCCCcCEEeCCC
Q 039967 96 ANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLG-NLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSE 174 (445)
Q Consensus 96 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 174 (445)
+.++++++.+.. +|..+. +.++.|++++|.++...+..+. .+++|++|++++|.+....+..|.++++|+.|++++
T Consensus 21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 455555555443 343332 3467777777777655555555 677777777777776655555666777777777777
Q ss_pred ccccccccccccCCCCCcEEEccCCccCCCCCccccCCCCcCEEEccCccccCCCCccc---cCCCcccEEEeeCccccc
Q 039967 175 NQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSI---GNLSSLRALYLYNNGLYS 251 (445)
Q Consensus 175 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~ 251 (445)
|.+....+..|..+++|+.|++++|.+....+..+..+++|+.|++++|.+.......+ ..+++|+.|++++|.+..
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 77665545556666777777777776665555666666667777776666654333333 345666666666666665
Q ss_pred cChhhhccccc--ccEEecccCccC
Q 039967 252 FVPEEIRYLTS--LSELELCTNHLS 274 (445)
Q Consensus 252 ~~~~~~~~~~~--L~~L~l~~~~~~ 274 (445)
.....+..++. ++.|++.+|.+.
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred cCHHHhhhccHhhcceEEecCCCcc
Confidence 54445555544 255666655543
No 117
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.65 E-value=2.2e-15 Score=126.20 Aligned_cols=131 Identities=18% Similarity=0.307 Sum_probs=70.7
Q ss_pred ccCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcCEEeCCCccccccccccccCCCCCc
Q 039967 113 LGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLT 192 (445)
Q Consensus 113 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 192 (445)
+..+++|++|++++|.++. +..+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+
T Consensus 62 l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~ 139 (197)
T 4ezg_A 62 IEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVN 139 (197)
T ss_dssp GGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCC
T ss_pred HhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCC
Confidence 4555555566665554431 22455566666666666655544455556666666666666665544455555666666
Q ss_pred EEEccCCc-cCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCccc
Q 039967 193 LMSLFNNS-LSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGL 249 (445)
Q Consensus 193 ~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 249 (445)
+|++++|. +.. .+ .+..+++|+.|++++|.+.... .+..+++|+.|++++|.+
T Consensus 140 ~L~L~~n~~i~~-~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 140 SIDLSYNGAITD-IM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp EEECCSCTBCCC-CG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC--
T ss_pred EEEccCCCCccc-cH-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCccc
Confidence 66666665 432 22 3555556666666655554321 444555555555555544
No 118
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.65 E-value=7e-15 Score=141.99 Aligned_cols=123 Identities=27% Similarity=0.310 Sum_probs=56.3
Q ss_pred CCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcCEEeCCCccccccccccccCCCCCcEEEcc
Q 039967 118 SLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLF 197 (445)
Q Consensus 118 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 197 (445)
+|++|++++|.++. +|. .+++|+.|++++|.+.. +|. .+++|+.|++++|.+.. +|. +. ++|+.|+++
T Consensus 121 ~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls 188 (571)
T 3cvr_A 121 SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVS 188 (571)
T ss_dssp TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECC
T ss_pred CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECc
Confidence 44455555444442 222 34445555555554442 222 23445555555555442 333 32 455555555
Q ss_pred CCccCCCCCccccCCCCc-------CEEEccCccccCCCCccccCCCcccEEEeeCccccccChhhh
Q 039967 198 NNSLSGSLPPILGNLKSL-------SALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEI 257 (445)
Q Consensus 198 ~~~~~~~~~~~~~~l~~L-------~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 257 (445)
+|.++ .+|. +.. +| +.|++++|.+. ..+..+..+++|+.|++++|.+....+..+
T Consensus 189 ~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l 250 (571)
T 3cvr_A 189 TNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESL 250 (571)
T ss_dssp SSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHH
T ss_pred CCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHH
Confidence 55544 2232 221 33 55566655555 233334445566666666665554444433
No 119
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.64 E-value=1.1e-14 Score=135.11 Aligned_cols=269 Identities=12% Similarity=0.115 Sum_probs=151.0
Q ss_pred CCCceEEeccCccccccCccccCCCCcCEEeCCCccccccccccccCCCCCcEEEccCCccCCCCCccccCCCCcCEEEc
Q 039967 141 SNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGL 220 (445)
Q Consensus 141 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 220 (445)
..++.+.+.+. +......+|.++ +|+.+.+..+ +..+...+|.. .+|+.+.+.. .+.......|..+++|+.+++
T Consensus 113 ~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l 187 (401)
T 4fdw_A 113 KGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADL 187 (401)
T ss_dssp SSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred CCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeec
Confidence 44444444432 222334444443 4555555443 33333344444 2455555543 333333444555555555555
Q ss_pred cCccccCCCCccccCCCcccEEEeeCccccccChhhhcccccccEEecccCccCCCccccccccCCccEEEcCCCcccCC
Q 039967 221 HINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGP 300 (445)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 300 (445)
..+.+......+|. +.+|+.+.+..+ +.......|..+++|+.+++..+ +......+|.. .+|+.+.+.++ +...
T Consensus 188 ~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~~-i~~I 262 (401)
T 4fdw_A 188 SKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPNG-VTNI 262 (401)
T ss_dssp TTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEETT-CCEE
T ss_pred CCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCCC-ccEE
Confidence 55555444444444 355666665532 44444555666666666666543 33334444544 56666666432 3334
Q ss_pred CCccccccCccceeeccCccccccccCCCcceEEcccCccccCCCccccCCCCCcEEECCCCccccccchhhccccCCCE
Q 039967 301 IPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNK 380 (445)
Q Consensus 301 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 380 (445)
...+|.+|++|+.+.+.++... .+........++..|++|+.+++.+ .++.....+|.+|++|+.
T Consensus 263 ~~~aF~~c~~L~~l~l~~~~~~--------------~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~ 327 (401)
T 4fdw_A 263 ASRAFYYCPELAEVTTYGSTFN--------------DDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQ 327 (401)
T ss_dssp CTTTTTTCTTCCEEEEESSCCC--------------CCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCE
T ss_pred ChhHhhCCCCCCEEEeCCcccc--------------CCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccE
Confidence 4566777777777777665432 0111123345677788888888874 355566677788888888
Q ss_pred EEccCCeeecccchhhcCCccCceeecCCCccccccCccccCCC-CccEEeCCCCcc
Q 039967 381 LILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLL-RLCYLDLSNNQF 436 (445)
Q Consensus 381 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~l~l~~~~~ 436 (445)
+.+..+ +......+|.++ +|+.++++++.........|..++ .++.|++-.+..
T Consensus 328 l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 328 LTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp EEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred EEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 888655 443555677777 888888888877766667777774 677777766543
No 120
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.64 E-value=1.2e-14 Score=134.89 Aligned_cols=264 Identities=10% Similarity=0.090 Sum_probs=168.8
Q ss_pred CCCCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCCccEEEecCcccccccceEEecCCcCCCCc
Q 039967 30 LSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSI 109 (445)
Q Consensus 30 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~L~~l~l~~~~~~~~~ 109 (445)
+..++.+.+.+. +......+|.++ +|+.+.+..+ +...-..+|.+ ..|+.+. +.. .+...-
T Consensus 112 ~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~--------------lp~-~l~~I~ 172 (401)
T 4fdw_A 112 LKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIV--------------FPS-TLEQLK 172 (401)
T ss_dssp CSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEE--------------CCT-TCCEEC
T ss_pred cCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEE--------------eCC-CccEeh
Confidence 455666666543 333555566654 5777776654 33222333333 1233333 322 223333
Q ss_pred cccccCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcCEEeCCCccccccccccccCCC
Q 039967 110 PLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLS 189 (445)
Q Consensus 110 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~ 189 (445)
...|.+|++|+.+++..+.++......|. ..+|+.+.+..+ +......+|.++++|+.+++.++ +..+...+|.. .
T Consensus 173 ~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~ 248 (401)
T 4fdw_A 173 EDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-S 248 (401)
T ss_dssp SSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-C
T ss_pred HHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-C
Confidence 45678888888888888877766566666 578888888754 55466677888888888888764 44455566666 6
Q ss_pred CCcEEEccCCccCCCCCccccCCCCcCEEEccCcccc-----CCCCccccCCCcccEEEeeCccccccChhhhccccccc
Q 039967 190 SLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLS-----GVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLS 264 (445)
Q Consensus 190 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 264 (445)
+|+.+.+.. .+.......|..+++|+.+.+..+... .....+|.++++|+.+.+.. .+.......|.++++|+
T Consensus 249 ~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~ 326 (401)
T 4fdw_A 249 GITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVT 326 (401)
T ss_dssp CCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCC
T ss_pred CccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCcc
Confidence 788888843 344455667778888888888766543 34456777888888888873 45555667777788888
Q ss_pred EEecccCccCCCccccccccCCccEEEcCCCcccCCCCccccccC-ccceeeccCcc
Q 039967 265 ELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLT-SVERVLLNQNN 320 (445)
Q Consensus 265 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~ 320 (445)
.+.+..+ +......+|..+ +|+.+++.++.........|.+++ .++.+.+..+.
T Consensus 327 ~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 327 QLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp EEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred EEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 8888553 444555667777 788888887766655555666664 56666665543
No 121
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.64 E-value=4.6e-16 Score=136.42 Aligned_cols=147 Identities=21% Similarity=0.316 Sum_probs=85.1
Q ss_pred ccccccEEecccCccCCCccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCcccccccc--CCCcceEEcc
Q 039967 259 YLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVN--VPKLGTFIIS 336 (445)
Q Consensus 259 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~L~~L~l~ 336 (445)
.+++|+.|++++|.+... + .+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.+... .++|+.|+++
T Consensus 39 ~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~~~L~~L~L~ 114 (263)
T 1xeu_A 39 ELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLD 114 (263)
T ss_dssp HHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCCTTCCCSSCCEEECC
T ss_pred hcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCcCccccCcccEEEcc
Confidence 334444444444443321 1 23334444444444444442211 3444444444444444332111 1345555555
Q ss_pred cCccccCCCccccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCccccc
Q 039967 337 VNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSS 415 (445)
Q Consensus 337 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 415 (445)
+|++.+. ..+..+++|++|++++|.+++. + .+..+++|+.|++++|++.+. ..+..+++|+.|++++|++...
T Consensus 115 ~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 115 NNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp SSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred CCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 5555432 3577788888888888888754 3 677888888888888888754 5677888888888888888754
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.63 E-value=1.9e-15 Score=123.18 Aligned_cols=138 Identities=24% Similarity=0.188 Sum_probs=104.4
Q ss_pred cCCccEEEcCCCccc-CCCCccccccCccceeeccCccccccccCCCcceEEcccCccccCCCccccCCCCCcEEECCCC
Q 039967 284 LTGLLLLNMCENHLS-GPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSN 362 (445)
Q Consensus 284 ~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 362 (445)
+++++.|++++|.+. +.++..+..+++|+.|++++|.+. .. ..+..+++|++|++++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~-------------------~~--~~~~~l~~L~~L~Ls~N 81 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-------------------SV--SNLPKLPKLKKLELSEN 81 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCC-------------------CC--SSCCCCSSCCEEEEESC
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCC-------------------Ch--hhhccCCCCCEEECcCC
Confidence 367778888887776 455666667777777777666543 22 55677888999999999
Q ss_pred ccccccchhhccccCCCEEEccCCeeeccc-chhhcCCccCceeecCCCccccccC---ccccCCCCccEEeCCCCcccc
Q 039967 363 NIVGEIPVQLGKLFSLNKLILNLNQLSGGM-PLELGSLIELQYLDLSTNKLKSSIP---KSIGNLLRLCYLDLSNNQFGH 438 (445)
Q Consensus 363 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~l~l~~~~~~~ 438 (445)
.+.+..|..+..+++|+.|++++|.+.+.. +..+..+++|+.|++++|+++...+ ..+..+++|++|++.+|...
T Consensus 82 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~- 160 (168)
T 2ell_A 82 RIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ- 160 (168)
T ss_dssp CCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-
T ss_pred cCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-
Confidence 888667777777899999999999887432 2678888999999999999885554 47888999999999999876
Q ss_pred cCCCC
Q 039967 439 KILVE 443 (445)
Q Consensus 439 ~~~~~ 443 (445)
++|++
T Consensus 161 ~~~~~ 165 (168)
T 2ell_A 161 EAPDS 165 (168)
T ss_dssp BCCSS
T ss_pred hcccc
Confidence 56654
No 123
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.61 E-value=1.6e-15 Score=132.93 Aligned_cols=167 Identities=20% Similarity=0.301 Sum_probs=77.5
Q ss_pred CCCCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCCccEEEecCcccccccceEEecCCcCCCCc
Q 039967 30 LSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSI 109 (445)
Q Consensus 30 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~L~~l~l~~~~~~~~~ 109 (445)
+.++..++++.+.+.+.. .+..+++|+.|+++++.+.. ++ .+..+++|+.++ +++|.+.+.
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~--------------L~~N~i~~~- 78 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELH--------------LSHNQISDL- 78 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEE--------------CCSSCCCCC-
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEE--------------CCCCccCCC-
Confidence 334555556666555322 35556666666666665542 12 233333222222 222222221
Q ss_pred cccccCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcCEEeCCCccccccccccccCCC
Q 039967 110 PLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLS 189 (445)
Q Consensus 110 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~ 189 (445)
+. +..+++|++|++++|.++.. +. +.. ++|++|++++|.+.. . ..+..+++|+.|++++|.+.+. + .+..++
T Consensus 79 ~~-l~~l~~L~~L~L~~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~-~-~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~ 150 (263)
T 1xeu_A 79 SP-LKDLTKLEELSVNRNRLKNL-NG-IPS-ACLSRLFLDNNELRD-T-DSLIHLKNLEILSIRNNKLKSI-V-MLGFLS 150 (263)
T ss_dssp GG-GTTCSSCCEEECCSSCCSCC-TT-CCC-SSCCEEECCSSCCSB-S-GGGTTCTTCCEEECTTSCCCBC-G-GGGGCT
T ss_pred hh-hccCCCCCEEECCCCccCCc-Cc-ccc-CcccEEEccCCccCC-C-hhhcCcccccEEECCCCcCCCC-h-HHccCC
Confidence 22 55555556666665555532 21 122 555555555555542 1 2345555555555555555432 2 344555
Q ss_pred CCcEEEccCCccCCCCCccccCCCCcCEEEccCccc
Q 039967 190 SLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQL 225 (445)
Q Consensus 190 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 225 (445)
+|+.|++++|.+... ..+..+++|+.+++++|.+
T Consensus 151 ~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 151 KLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp TCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEE
T ss_pred CCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcc
Confidence 555555555555432 3344444444554444444
No 124
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.59 E-value=4.3e-17 Score=158.25 Aligned_cols=190 Identities=19% Similarity=0.172 Sum_probs=121.3
Q ss_pred cCCCcccEEEeeCccccccChhhhcccccccEEecccCcc-------------CCCccccccccCCccEEE-cCCCcccC
Q 039967 234 GNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHL-------------SGVIPHSIGNLTGLLLLN-MCENHLSG 299 (445)
Q Consensus 234 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-------------~~~~~~~l~~~~~L~~L~-l~~~~~~~ 299 (445)
..+++|+.|++++|.+.. +|..+..+++|+.|+++++.. ....+..+..+++|+.|+ ++.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~~-Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~--- 421 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTV-LQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY--- 421 (567)
T ss_dssp STTTTSSSCCCCHHHHHH-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHH---
T ss_pred ccCccceeccCChhhHHh-hHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcc---
Confidence 345666666666666654 455666666666666654421 111222233333333333 22211
Q ss_pred CCCccccccCccceeeccCccccccccCCCcceEEcccCccccCCCccccCCCCCcEEECCCCccccccchhhccccCCC
Q 039967 300 PIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLN 379 (445)
Q Consensus 300 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 379 (445)
+..|+.+.+.+|.+.... ...|+.|++++|.+++ +|. +..+++|+.|++++|.++ .+|..+..+++|+
T Consensus 422 --------~~~L~~l~l~~n~i~~l~-~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~ 489 (567)
T 1dce_A 422 --------LDDLRSKFLLENSVLKME-YADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLE 489 (567)
T ss_dssp --------HHHHHHHHHHHHHHHHHH-HTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCC
T ss_pred --------cchhhhhhhhcccccccC-ccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCC
Confidence 112222223333332221 2357788888887775 444 778888888888888887 6677888888888
Q ss_pred EEEccCCeeecccchhhcCCccCceeecCCCcccccc-CccccCCCCccEEeCCCCcccccCC
Q 039967 380 KLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSI-PKSIGNLLRLCYLDLSNNQFGHKIL 441 (445)
Q Consensus 380 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~l~l~~~~~~~~~~ 441 (445)
.|++++|.+.+ +| .++.+++|+.|++++|++++.. |..+..+++|++|++++|++++..|
T Consensus 490 ~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 490 VLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp EEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred EEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 88888888874 56 7888888888888888888665 7888888888888888888886654
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.59 E-value=8.6e-15 Score=121.91 Aligned_cols=132 Identities=24% Similarity=0.324 Sum_probs=95.6
Q ss_pred cEEEcCCCcccCCCCccccccCccceeeccCccccccccCCCcceEEcccCccccCCCc-cccCCCCCcEEECCCCcccc
Q 039967 288 LLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPP-EIGDSPKLQVLDLSSNNIVG 366 (445)
Q Consensus 288 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~ 366 (445)
++++++++++. .+|..+. ..++.|++++|.+ ....+. .+..+++|++|++++|.+++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i-------------------~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 68 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNEL-------------------GRISSDGLFGRLPHLVKLELKRNQLTG 68 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCC-------------------CSBCCSCSGGGCTTCCEEECCSSCCCC
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcC-------------------CccCCccccccCCCCCEEECCCCCCCC
Confidence 56777777765 4444332 2556666655554 333332 36777888888888888887
Q ss_pred ccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCccccccCccccCCCCccEEeCCCCcccccCC
Q 039967 367 EIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQFGHKIL 441 (445)
Q Consensus 367 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~ 441 (445)
..|..|..+++|+.|++++|++.+..+..+.++++|+.|++++|++++..+..|..+++|++|++++|+|.+..+
T Consensus 69 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 69 IEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp BCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred cCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 777788888888888888888876666677788888888888888887777788888888888888888875543
No 126
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.58 E-value=7e-17 Score=156.75 Aligned_cols=203 Identities=20% Similarity=0.195 Sum_probs=145.3
Q ss_pred CCCCCCcEEeccCcccCCCCCccccCCCCCcEEEecCcc-------------cccCCCcccccCCCccEEE-ecCccccc
Q 039967 28 GNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQ-------------LHGSIPLEIGQLSLINVLA-LCHNYFVC 93 (445)
Q Consensus 28 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-------------~~~~~~~~~~~l~~L~~l~-l~~~~~~~ 93 (445)
..+++|+.|++++|.+. .+|..++.+++|+.|+++++. ..+..|..+..++.|+.++ +..+.+ .
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~-~ 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL-D 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH-H
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc-c
Confidence 56788899999999887 678888888999999887664 3445566777888888887 444332 3
Q ss_pred ccceEEecCCcCCCCccccccCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcCEEeCC
Q 039967 94 NLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLS 173 (445)
Q Consensus 94 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 173 (445)
+|+.+.+..+.+....+ ..|+.|++++|.++. +|. +..+++|+.|++++|.+. .+|..+..+++|+.|+++
T Consensus 424 ~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls 494 (567)
T 1dce_A 424 DLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQAS 494 (567)
T ss_dssp HHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECC
T ss_pred hhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECC
Confidence 45555555554432111 247788888888874 554 778888888888888877 667778888888888888
Q ss_pred CccccccccccccCCCCCcEEEccCCccCCCC-CccccCCCCcCEEEccCccccCCCCc---cccCCCcccEEE
Q 039967 174 ENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSL-PPILGNLKSLSALGLHINQLSGVIPS---SIGNLSSLRALY 243 (445)
Q Consensus 174 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~---~~~~~~~L~~L~ 243 (445)
+|.+.. +| .+..+++|+.|++++|.++... |..+..+++|+.|++++|.+....+. .+..+++|+.|+
T Consensus 495 ~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 495 DNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp SSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 888774 55 6778888888888888887654 77788888888888888877644321 223467777775
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.57 E-value=8.3e-15 Score=116.76 Aligned_cols=129 Identities=22% Similarity=0.195 Sum_probs=96.6
Q ss_pred cCCccEEEcCCCccc-CCCCccccccCccceeeccCccccccccCCCcceEEcccCccccCCCccccCCCCCcEEECCCC
Q 039967 284 LTGLLLLNMCENHLS-GPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSN 362 (445)
Q Consensus 284 ~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 362 (445)
.++++.|++++|.+. +.++..+..+++|+.|++++|.+. .. ..+..+++|++|++++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-------------------~~--~~~~~l~~L~~L~Ls~n 74 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-------------------SI--ANLPKLNKLKKLELSDN 74 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCC-------------------CC--TTCCCCTTCCEEECCSS
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCC-------------------Cc--hhhhcCCCCCEEECCCC
Confidence 356777777777776 455666666777777777666553 22 45667788899999988
Q ss_pred ccccccchhhccccCCCEEEccCCeeecc-cchhhcCCccCceeecCCCccccccC---ccccCCCCccEEeCCC
Q 039967 363 NIVGEIPVQLGKLFSLNKLILNLNQLSGG-MPLELGSLIELQYLDLSTNKLKSSIP---KSIGNLLRLCYLDLSN 433 (445)
Q Consensus 363 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~l~l~~ 433 (445)
.+.+..|..+..+++|++|++++|++.+. .+..+..+++|+.|++++|++++..+ ..+..+++|++|++++
T Consensus 75 ~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 75 RVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred cccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 88866777777788999999999988743 23678888899999999998886555 4678888999888764
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.56 E-value=3.5e-14 Score=118.13 Aligned_cols=92 Identities=25% Similarity=0.306 Sum_probs=45.8
Q ss_pred ccccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCccccccCccccCCCC
Q 039967 346 PEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLR 425 (445)
Q Consensus 346 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 425 (445)
..+..+++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..|.++++|+.|++++|+++...+..|..+++
T Consensus 48 ~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 127 (193)
T 2wfh_A 48 KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSA 127 (193)
T ss_dssp GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTT
T ss_pred HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCcc
Confidence 33444445555555555554444444455555555555555554444444555555555555555555433344555555
Q ss_pred ccEEeCCCCccc
Q 039967 426 LCYLDLSNNQFG 437 (445)
Q Consensus 426 L~~l~l~~~~~~ 437 (445)
|++|++.+|+|.
T Consensus 128 L~~L~L~~N~~~ 139 (193)
T 2wfh_A 128 LSHLAIGANPLY 139 (193)
T ss_dssp CCEEECCSSCEE
T ss_pred ccEEEeCCCCee
Confidence 555555555543
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.55 E-value=3.1e-14 Score=116.99 Aligned_cols=113 Identities=24% Similarity=0.166 Sum_probs=89.6
Q ss_pred CcceEEcccCccccCCCccccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecC
Q 039967 329 KLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLS 408 (445)
Q Consensus 329 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 408 (445)
+++.|++.++++.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|+.|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 108 (177)
T 2o6r_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALD 108 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECc
Confidence 44555555555555555567888999999999999886666777889999999999999886666667888999999999
Q ss_pred CCccccccCccccCCCCccEEeCCCCcccccCC
Q 039967 409 TNKLKSSIPKSIGNLLRLCYLDLSNNQFGHKIL 441 (445)
Q Consensus 409 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~ 441 (445)
+|++....+..+..+++|++|++++|++.+..|
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 109 TNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 999986666667889999999999999887654
No 130
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.54 E-value=1.6e-12 Score=121.27 Aligned_cols=337 Identities=10% Similarity=0.067 Sum_probs=160.7
Q ss_pred CCCCCcccCCCC-CCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCCccEEEecCcccccccceE
Q 039967 20 FGIIPPQIGNLS-NLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANF 98 (445)
Q Consensus 20 ~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~L~~l 98 (445)
+.+....|.++. .|+.+.+... ++.....+|.+|.+|+.+.+..+. |..+.
T Consensus 52 t~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~-----p~~l~---------------------- 103 (394)
T 4gt6_A 52 SKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNK-----PSCVK---------------------- 103 (394)
T ss_dssp EEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGC-----CCCCC----------------------
T ss_pred eEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCC-----CCeee----------------------
Confidence 344556677664 5788887654 555667778888888888776542 11100
Q ss_pred EecCCcCCCCccccccCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcCEEeCCCcccc
Q 039967 99 YLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLI 178 (445)
Q Consensus 99 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 178 (445)
..-...|.++.+|+.+.+..+ ++.....+|..+.+|+.+.+.... .......|.++..|+.+.+.++ +.
T Consensus 104 --------~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~~-~~I~~~~F~~c~~L~~i~~~~~-~~ 172 (394)
T 4gt6_A 104 --------KIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEGV-TSVADGMFSYCYSLHTVTLPDS-VT 172 (394)
T ss_dssp --------EECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCEEECCTT-CC
T ss_pred --------EechhhchhcccceeeccCCc-cceehhhhhhhhccccccccccee-eeecccceecccccccccccce-ee
Confidence 001122444444444444322 222333445555555555554332 2233445555555555555443 22
Q ss_pred ccccccccCCCCCcEEEccCCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCccccccChhhhc
Q 039967 179 GSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIR 258 (445)
Q Consensus 179 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 258 (445)
.+...+|. ...|+.+.+...-.. .....+..+..+.................+........... ...
T Consensus 173 ~I~~~aF~-~~~l~~i~ip~~~~~-i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~ 239 (394)
T 4gt6_A 173 AIEERAFT-GTALTQIHIPAKVTR-IGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALI-----------RYP 239 (394)
T ss_dssp EECTTTTT-TCCCSEEEECTTCCE-ECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEE-----------ECC
T ss_pred Eecccccc-ccceeEEEECCcccc-cccchhhhccccceecccccccccccceeeccccccccccc-----------ccc
Confidence 22333332 234555555443222 33334445555555544333222111001110000000000 001
Q ss_pred ccccccEEecccCccCCCccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCccccccccCCCcceEEcccC
Q 039967 259 YLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVN 338 (445)
Q Consensus 259 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~ 338 (445)
....+..+.+.. .+......+|..+..|+.+.+.+.... ....+|.+|+.|+.+.+...
T Consensus 240 ~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~~------------------- 298 (394)
T 4gt6_A 240 SQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSSR------------------- 298 (394)
T ss_dssp TTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCTT-------------------
T ss_pred cccccceEEcCC-cceEcccceeeecccccEEecccccce-ecCcccccccccccccCCCc-------------------
Confidence 112223333322 122233345556666666666554332 34456667777777665331
Q ss_pred ccccCCCccccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCccccccCc
Q 039967 339 NISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPK 418 (445)
Q Consensus 339 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 418 (445)
+......++..|.+|+.+++.++ ++.....+|.+|.+|+++.+..+ +......+|.++.+|+.+++.++.... .
T Consensus 299 -i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~ 372 (394)
T 4gt6_A 299 -ITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---N 372 (394)
T ss_dssp -CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---H
T ss_pred -ccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---h
Confidence 11123345667777777777654 34355567777788888877654 443445677777888888887765432 3
Q ss_pred cccCCCCccEEeCCCCc
Q 039967 419 SIGNLLRLCYLDLSNNQ 435 (445)
Q Consensus 419 ~~~~~~~L~~l~l~~~~ 435 (445)
++..+..|+.+.+..+.
T Consensus 373 ~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 373 AISTDSGLQNLPVAPGS 389 (394)
T ss_dssp TCBCCCCC---------
T ss_pred hhhccCCCCEEEeCCCC
Confidence 56667777777766553
No 131
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.54 E-value=1.2e-12 Score=122.03 Aligned_cols=285 Identities=10% Similarity=0.042 Sum_probs=169.7
Q ss_pred ccccCCCCCcEEEccCC---cccCCCCccccCCCCCceEEeccCccccccCccccCCCCcCEEeCCCccccccccccccC
Q 039967 111 LVLGNLNSLSTMDLSQN---QFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGN 187 (445)
Q Consensus 111 ~~~~~~~~L~~L~l~~~---~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~ 187 (445)
..|.+|.+|+.+.+..+ .++.....+|..+.+|+.+.+..+ +......+|..+.+|+.+.+.... ..+....+..
T Consensus 81 ~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~~-~~I~~~~F~~ 158 (394)
T 4gt6_A 81 NAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEGV-TSVADGMFSY 158 (394)
T ss_dssp TTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTTC-CEECTTTTTT
T ss_pred HHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccccccccee-eeecccceec
Confidence 35666677777766543 244444556777777777666544 333445566777777777776532 2344455666
Q ss_pred CCCCcEEEccCCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCccccccChhhhcccccccEEe
Q 039967 188 LSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELE 267 (445)
Q Consensus 188 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 267 (445)
+..|+.+.+..+ +.......|. ...|+.+.+...... ....+|..+..++................+...
T Consensus 159 c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~~-i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~------- 228 (394)
T 4gt6_A 159 CYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVTR-IGTNAFSECFALSTITSDSESYPAIDNVLYEKS------- 228 (394)
T ss_dssp CTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCCE-ECTTTTTTCTTCCEEEECCSSSCBSSSCEEEEC-------
T ss_pred ccccccccccce-eeEecccccc-ccceeEEEECCcccc-cccchhhhccccceecccccccccccceeeccc-------
Confidence 677777766544 2212233333 245666666543222 334455556666655544332221100000000
Q ss_pred cccCccCCCccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCccccccccCCCcceEEcccCccccCCCcc
Q 039967 268 LCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPE 347 (445)
Q Consensus 268 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 347 (445)
...............+..+.+.+. +......+|.+|..|+.+.+..... .....+
T Consensus 229 ----~~~~~~~~~~~~~~~~~~~~ip~~-v~~i~~~aF~~c~~L~~i~lp~~~~--------------------~I~~~a 283 (394)
T 4gt6_A 229 ----ANGDYALIRYPSQREDPAFKIPNG-VARIETHAFDSCAYLASVKMPDSVV--------------------SIGTGA 283 (394)
T ss_dssp ----TTSCEEEEECCTTCCCSEEECCTT-EEEECTTTTTTCSSCCEEECCTTCC--------------------EECTTT
T ss_pred ----ccccccccccccccccceEEcCCc-ceEcccceeeecccccEEecccccc--------------------eecCcc
Confidence 000000001112233444554432 2223456788899999888755321 123456
Q ss_pred ccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCccccccCccccCCCCcc
Q 039967 348 IGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLC 427 (445)
Q Consensus 348 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 427 (445)
+..|+.|+.+.+.+ .++.....+|.+|.+|+.+.+.++ +......+|.++.+|+.+.|..+ ++.+...+|.+|.+|+
T Consensus 284 F~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~ 360 (394)
T 4gt6_A 284 FMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALN 360 (394)
T ss_dssp TTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCC
T ss_pred cccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCC
Confidence 78899999999974 445466778999999999999875 54455678999999999999754 6667889999999999
Q ss_pred EEeCCCCc
Q 039967 428 YLDLSNNQ 435 (445)
Q Consensus 428 ~l~l~~~~ 435 (445)
.+++.++.
T Consensus 361 ~i~~~~~~ 368 (394)
T 4gt6_A 361 NIEYSGSR 368 (394)
T ss_dssp EEEESSCH
T ss_pred EEEECCce
Confidence 99998874
No 132
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.53 E-value=7.3e-14 Score=113.73 Aligned_cols=132 Identities=20% Similarity=0.218 Sum_probs=79.5
Q ss_pred CCCcEEeccCcccC-CCCCccccCCCCCcEEEecCcccccCCCcccccCCCccEEEecCcccccccceEEecCCcCCCCc
Q 039967 31 SNLQYLDLGSNQLS-GVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSI 109 (445)
Q Consensus 31 ~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~L~~l~l~~~~~~~~~ 109 (445)
++|+.|++++|.+. +..|..+..+++|++|++++|.+... ..+..+++|+ +|++++|.+....
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~--------------~L~Ls~N~l~~~~ 87 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLK--------------KLELSENRIFGGL 87 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCC--------------EEEEESCCCCSCC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCC--------------EEECcCCcCchHH
Confidence 45666666666554 33444455556666666666655532 3444444333 3333333334445
Q ss_pred cccccCCCCCcEEEccCCcccCCC-CccccCCCCCceEEeccCccccccC---ccccCCCCcCEEeCCCcccc
Q 039967 110 PLVLGNLNSLSTMDLSQNQFSGSI-PLSLGNLSNLDKLYLYSNSFSGSIP---SIIGNLKSLLQLDLSENQLI 178 (445)
Q Consensus 110 ~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~---~~~~~l~~L~~L~l~~~~~~ 178 (445)
|..+..+++|++|++++|.++... +..+..+++|++|++++|.+....+ ..+..+++|++|++++|.+.
T Consensus 88 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 88 DMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred HHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 555666777888888887776432 2567777888888888887773332 26777888888888887765
No 133
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.49 E-value=6.4e-15 Score=147.52 Aligned_cols=136 Identities=21% Similarity=0.244 Sum_probs=69.3
Q ss_pred cccccCCccEEEcCCCcccCCCCccccccCccceeeccCcccccc----ccCCCcceEEcccCccccCCCccccCCCCCc
Q 039967 280 SIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGK----VNVPKLGTFIISVNNISESIPPEIGDSPKLQ 355 (445)
Q Consensus 280 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 355 (445)
.+..++.|+.|++++|.+. .++..+..+++|+.|+|++|.+... ..+++|+.|++++|.++ .+|..+..+++|+
T Consensus 219 ~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~ 296 (727)
T 4b8c_D 219 SKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLK 296 (727)
T ss_dssp ---CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCS
T ss_pred hhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCC
Confidence 3444455555555555544 3333333444555555544444311 11233333333333333 4455666667777
Q ss_pred EEECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCCc-cCceeecCCCccccccCc
Q 039967 356 VLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLI-ELQYLDLSTNKLKSSIPK 418 (445)
Q Consensus 356 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~ 418 (445)
+|++++|.+. .+|..|..+++|+.|+|++|.+.+..|..+.... .+..+++++|.+++..|.
T Consensus 297 ~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~ 359 (727)
T 4b8c_D 297 YFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH 359 (727)
T ss_dssp EEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred EEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence 7777777665 4555566677777777777776655555554322 122356666666654443
No 134
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.47 E-value=4.3e-13 Score=111.56 Aligned_cols=129 Identities=25% Similarity=0.268 Sum_probs=79.5
Q ss_pred cEEeccCCcCCCCCCcccCCCCCCcEEeccCcccCCCCCc-cccCCCCCcEEEecCcccccCCCcccccCCCccEEEecC
Q 039967 10 VHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPL-EIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCH 88 (445)
Q Consensus 10 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~ 88 (445)
++|+++++.+..++. .+. .+++.|++++|.+....+. .+..+++|++|++++|.+.+..|
T Consensus 11 ~~l~~s~~~l~~ip~-~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---------------- 71 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPR-DIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEP---------------- 71 (192)
T ss_dssp TEEECTTSCCSSCCS-CCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCT----------------
T ss_pred CEEEcCCCCcCcCcc-CCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCH----------------
Confidence 667777777665533 222 2677777777777655443 36667777777777776654333
Q ss_pred cccccccceEEecCCcCCCCccccccCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcC
Q 039967 89 NYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLL 168 (445)
Q Consensus 89 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 168 (445)
..|..+++|++|++++|.++...+..|..+++|++|++++|.+....+..+..+++|+
T Consensus 72 ----------------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 129 (192)
T 1w8a_A 72 ----------------------NAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLT 129 (192)
T ss_dssp ----------------------TTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCC
T ss_pred ----------------------hHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCC
Confidence 4455555666666666666655555566666666666666666655555666666666
Q ss_pred EEeCCCccccc
Q 039967 169 QLDLSENQLIG 179 (445)
Q Consensus 169 ~L~l~~~~~~~ 179 (445)
+|++++|++..
T Consensus 130 ~L~L~~N~l~c 140 (192)
T 1w8a_A 130 SLNLASNPFNC 140 (192)
T ss_dssp EEECTTCCBCC
T ss_pred EEEeCCCCccC
Confidence 66666666543
No 135
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.47 E-value=7.8e-14 Score=111.07 Aligned_cols=88 Identities=23% Similarity=0.313 Sum_probs=35.9
Q ss_pred ccCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcCEEeCCCcccccc-ccccccCCCCC
Q 039967 113 LGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGS-IPLSFGNLSSL 191 (445)
Q Consensus 113 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L 191 (445)
+..+++|++|++++|.++.. ..+..+++|++|++++|.+....|..+..+++|++|++++|.+... .+..+..+++|
T Consensus 38 ~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L 115 (149)
T 2je0_A 38 TDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENL 115 (149)
T ss_dssp CTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTC
T ss_pred HhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCC
Confidence 34444444444444444322 3344444444444444444322333333344444444444443321 11333444444
Q ss_pred cEEEccCCccC
Q 039967 192 TLMSLFNNSLS 202 (445)
Q Consensus 192 ~~L~l~~~~~~ 202 (445)
++|++++|.++
T Consensus 116 ~~L~l~~N~l~ 126 (149)
T 2je0_A 116 KSLDLFNCEVT 126 (149)
T ss_dssp CEEECTTCGGG
T ss_pred CEEeCcCCccc
Confidence 44444444443
No 136
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.47 E-value=4.2e-14 Score=141.62 Aligned_cols=180 Identities=22% Similarity=0.265 Sum_probs=107.6
Q ss_pred CCccccCCCcccEEEeeCccccccChhhhcccccccEEecccCccCCCccccccccCCccEEEcCCCcccCCCCcccccc
Q 039967 229 IPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNL 308 (445)
Q Consensus 229 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 308 (445)
.+..+..++.|+.|++++|.+... +..+..+++|++|++++|.+. ..+..+..+++|++|++++|.+. .+|..+..+
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~~l-~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l 292 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIFNI-SANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSC 292 (727)
T ss_dssp ------CCCCCCEEECTTSCCSCC-CGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGG
T ss_pred ChhhhccCCCCcEEECCCCCCCCC-ChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCC
Confidence 345667778888888888887754 434447788888888888887 56677788888889999888888 667778888
Q ss_pred CccceeeccCccccccccCCCcceEEcccCccccCCCccccCCCCCcEEECCCCccccccchhhccccC-CCEEEccCCe
Q 039967 309 TSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFS-LNKLILNLNQ 387 (445)
Q Consensus 309 ~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~ 387 (445)
++|+.|++++|.+. .+|..+..+++|++|++++|.+.+..|..+..+.. ...+++++|.
T Consensus 293 ~~L~~L~L~~N~l~--------------------~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~ 352 (727)
T 4b8c_D 293 FQLKYFYFFDNMVT--------------------TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNR 352 (727)
T ss_dssp TTCSEEECCSSCCC--------------------CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCCEEECCCCCCC--------------------ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCc
Confidence 88888887777654 55667888999999999999999888877755422 2347788888
Q ss_pred eecccchhhcCCccCceeecCCC--------ccccccCccccCCCCccEEeCCCCccc
Q 039967 388 LSGGMPLELGSLIELQYLDLSTN--------KLKSSIPKSIGNLLRLCYLDLSNNQFG 437 (445)
Q Consensus 388 ~~~~~~~~~~~~~~L~~L~l~~~--------~~~~~~~~~~~~~~~L~~l~l~~~~~~ 437 (445)
+.+..|. .|+.|++++| .+....+..+..+..+....+..|.+.
T Consensus 353 l~~~~p~------~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 353 PEIPLPH------ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp CCCCCCC------C-----------------------------------------CCC
T ss_pred ccCcCcc------ccceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 8765553 5666777777 222222233444555555666666664
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.46 E-value=1.6e-13 Score=112.49 Aligned_cols=88 Identities=24% Similarity=0.189 Sum_probs=46.7
Q ss_pred cccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccch--hhcCCccCceeecCCCccccccCc----cc
Q 039967 347 EIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPL--ELGSLIELQYLDLSTNKLKSSIPK----SI 420 (445)
Q Consensus 347 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~----~~ 420 (445)
.+..+++|++|++++|.+++..+..+..+++|+.|++++|.+. .++. .+..+++|+.|++++|++.. .+. .+
T Consensus 59 ~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~ 136 (176)
T 1a9n_A 59 GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVI 136 (176)
T ss_dssp CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHH
T ss_pred ccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHH
Confidence 3444555666666666555433333455556666666666554 3333 45555566666666666552 232 25
Q ss_pred cCCCCccEEeCCCCcc
Q 039967 421 GNLLRLCYLDLSNNQF 436 (445)
Q Consensus 421 ~~~~~L~~l~l~~~~~ 436 (445)
..+++|+.|++++|+.
T Consensus 137 ~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 137 YKVPQVRVLDFQKVKL 152 (176)
T ss_dssp HHCTTCSEETTEECCH
T ss_pred HHCCccceeCCCcCCH
Confidence 5556666666655543
No 138
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.42 E-value=2e-12 Score=107.51 Aligned_cols=125 Identities=31% Similarity=0.416 Sum_probs=60.5
Q ss_pred EEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcCEEeCCCccccccccccccCCCCCcEEEccCCc
Q 039967 121 TMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNS 200 (445)
Q Consensus 121 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 200 (445)
.++++++.++ .+|..+. +++++|.+.+|.+. .+|..|.++++|+.|++++|.+....+..|..+++|++|++++|.
T Consensus 14 ~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 14 VVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp EEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 4445544444 2232221 34555555555544 334445555555555555555544444444555555555555555
Q ss_pred cCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCccc
Q 039967 201 LSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGL 249 (445)
Q Consensus 201 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 249 (445)
+....+..+..+++|+.|++++|.+.......+..+++|+.+++++|.+
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 5444444445555555555555555433333444455555555555543
No 139
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.38 E-value=7.3e-12 Score=102.73 Aligned_cols=109 Identities=28% Similarity=0.355 Sum_probs=46.8
Q ss_pred CCceEEeccCccccccCccccCCCCcCEEeCCCccccccccccccCCCCCcEEEccCCccCCCCCccccCCCCcCEEEcc
Q 039967 142 NLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLH 221 (445)
Q Consensus 142 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 221 (445)
+|+.|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.++...+..+..+++|++++++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 108 (177)
T 2o6r_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALD 108 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECc
Confidence 34444444444332222233344444444444444433222333444444444444444443333334444455555555
Q ss_pred CccccCCCCccccCCCcccEEEeeCcccc
Q 039967 222 INQLSGVIPSSIGNLSSLRALYLYNNGLY 250 (445)
Q Consensus 222 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 250 (445)
+|.+.......+..+++|+++++++|.+.
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 109 TNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 54444333333444555555555555443
No 140
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.38 E-value=8.7e-13 Score=108.13 Aligned_cols=132 Identities=20% Similarity=0.216 Sum_probs=75.7
Q ss_pred cCCCCCCcEEeccCcccCCCCCccccCC-CCCcEEEecCcccccCCCcccccCCCccEEEecCcccccccceEEecCCcC
Q 039967 27 IGNLSNLQYLDLGSNQLSGVIPLEIGHL-NQLRILYFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSL 105 (445)
Q Consensus 27 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~L~~l~l~~~~~ 105 (445)
+..+.+|+.|++++|.+... +. +..+ ++|++|++++|.+.+. ..+..++.|+.+ ++++|.+
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L--------------~Ls~N~l 76 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVI-EN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTL--------------LVNNNRI 76 (176)
T ss_dssp EECTTSCEEEECTTSCCCSC-CC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEE--------------ECCSSCC
T ss_pred cCCcCCceEEEeeCCCCchh-HH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEE--------------ECCCCcc
Confidence 34445555555555555422 22 2222 2555555555555432 333344433322 3333333
Q ss_pred CCCccccccCCCCCcEEEccCCcccCCCCc--cccCCCCCceEEeccCccccccCcc----ccCCCCcCEEeCCCcccc
Q 039967 106 FNSIPLVLGNLNSLSTMDLSQNQFSGSIPL--SLGNLSNLDKLYLYSNSFSGSIPSI----IGNLKSLLQLDLSENQLI 178 (445)
Q Consensus 106 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~----~~~l~~L~~L~l~~~~~~ 178 (445)
....+..+..+++|++|++++|.++ ..+. .+..+++|+.|++.+|.+. ..+.. +..+++|+.|+++++...
T Consensus 77 ~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 77 CRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred cccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 3332333467778888888888876 3443 6777888888888888876 44553 777888888888887754
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.38 E-value=1.2e-14 Score=121.70 Aligned_cols=153 Identities=23% Similarity=0.250 Sum_probs=97.3
Q ss_pred cccccEEecccCccCCCccc------cccccCCccEEEcCCCcccCCCCccccccCccceeeccCccccccccCCCcceE
Q 039967 260 LTSLSELELCTNHLSGVIPH------SIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTF 333 (445)
Q Consensus 260 ~~~L~~L~l~~~~~~~~~~~------~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L 333 (445)
...++.++++.+.+....+. .+..+++|++|++++|.+.+ ++ .+..+++|+.|++++|.+.
T Consensus 17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~----------- 83 (198)
T 1ds9_A 17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK----------- 83 (198)
T ss_dssp TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-----------
T ss_pred cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-----------
Confidence 34444444444444333222 56667777777777777764 44 5666666666666666543
Q ss_pred EcccCccccCCCccccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccc-hhhcCCccCceeecCCCcc
Q 039967 334 IISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMP-LELGSLIELQYLDLSTNKL 412 (445)
Q Consensus 334 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~ 412 (445)
..+..+..+++|++|++++|.+.+ .+ .+..+++|+.|++++|++.+..+ ..+..+++|+.|++++|++
T Consensus 84 ---------~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 84 ---------KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp ---------SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred ---------cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence 233444455778888888887764 33 56777888888888887763322 3677788888888888887
Q ss_pred ccccCc----------cccCCCCccEEeCCCCcccc
Q 039967 413 KSSIPK----------SIGNLLRLCYLDLSNNQFGH 438 (445)
Q Consensus 413 ~~~~~~----------~~~~~~~L~~l~l~~~~~~~ 438 (445)
....+. .+..+++|++|+ +++++.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 153 YNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp HHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred ccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 654333 267788888776 666654
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.34 E-value=6.2e-12 Score=102.19 Aligned_cols=106 Identities=30% Similarity=0.271 Sum_probs=75.5
Q ss_pred ceEEcccCccccCCCccccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCC
Q 039967 331 GTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTN 410 (445)
Q Consensus 331 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 410 (445)
+.++++++.+.. .|..+. +.|++|++++|.+++..+..|..+++|++|++++|++.+..+..|..+++|++|++++|
T Consensus 12 ~~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 344555555543 333332 67788888888887666777778888888888888887555556677888888888888
Q ss_pred ccccccCccccCCCCccEEeCCCCccccc
Q 039967 411 KLKSSIPKSIGNLLRLCYLDLSNNQFGHK 439 (445)
Q Consensus 411 ~~~~~~~~~~~~~~~L~~l~l~~~~~~~~ 439 (445)
++....+..|..+++|++|++++|+|...
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 88766666677888888888888887643
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.31 E-value=1.2e-11 Score=100.84 Aligned_cols=103 Identities=29% Similarity=0.291 Sum_probs=68.5
Q ss_pred eEEcccCccccCCCccccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCc
Q 039967 332 TFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNK 411 (445)
Q Consensus 332 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 411 (445)
.++++++.+. ..|..+. ++|++|++++|.+.+..+..|.++++|+.|++++|++.+..+..|..+++|+.|++++|+
T Consensus 16 ~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 16 LVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 3444444443 3333332 667777777777776666677777777777777777774444456677777777777777
Q ss_pred cccccCccccCCCCccEEeCCCCccc
Q 039967 412 LKSSIPKSIGNLLRLCYLDLSNNQFG 437 (445)
Q Consensus 412 ~~~~~~~~~~~~~~L~~l~l~~~~~~ 437 (445)
+....+..|..+++|++|++++|+|.
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred cceeCHHHhccccCCCEEEeCCCCcc
Confidence 77555555777777777777777776
No 144
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.30 E-value=4.9e-10 Score=103.87 Aligned_cols=82 Identities=9% Similarity=-0.044 Sum_probs=60.1
Q ss_pred CCccccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCccccccCccccCC
Q 039967 344 IPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNL 423 (445)
Q Consensus 344 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 423 (445)
....+..|++|+.+.+.++.++.....+|.+|.+|+.+.+..+ +......+|.++.+|+.+.+..+ ++.+...+|.+|
T Consensus 278 ~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c 355 (379)
T 4h09_A 278 PYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGS 355 (379)
T ss_dssp CTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTS
T ss_pred cccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCC
Confidence 3446778888888888887777666778888888888888754 44344567888888888888654 555677788777
Q ss_pred CCcc
Q 039967 424 LRLC 427 (445)
Q Consensus 424 ~~L~ 427 (445)
..++
T Consensus 356 ~~~~ 359 (379)
T 4h09_A 356 SITK 359 (379)
T ss_dssp SCCC
T ss_pred CCCc
Confidence 5443
No 145
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.30 E-value=4.9e-10 Score=103.83 Aligned_cols=316 Identities=9% Similarity=0.032 Sum_probs=158.8
Q ss_pred CCCCCCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCCccEEEecCcccccccceEEecCCcCCC
Q 039967 28 GNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFN 107 (445)
Q Consensus 28 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~L~~l~l~~~~~~~ 107 (445)
....+|+.+.+... ++.+...+|.+|.+|+.+++..+ ++..-..+|..+ .|+.+.+.. +++.
T Consensus 43 ~~~~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~-----~l~~---------- 104 (379)
T 4h09_A 43 KDRDRISEVRVNSG-ITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGME-----RVKK---------- 104 (379)
T ss_dssp GGGGGCSEEEECTT-EEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECT-----TCCE----------
T ss_pred ccccCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCc-----eeeE----------
Confidence 34456777777643 44466677888888888887654 332223344443 333333321 1111
Q ss_pred CccccccCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcCEEeCCCccccccccccccC
Q 039967 108 SIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGN 187 (445)
Q Consensus 108 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~ 187 (445)
.-...|..+ +|+.+++..+ +.......|... .++.+.+..+ +.......|..+..++.+.+..............
T Consensus 105 I~~~aF~~~-~L~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~- 179 (379)
T 4h09_A 105 FGDYVFQGT-DLDDFEFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVL- 179 (379)
T ss_dssp ECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEE-
T ss_pred eccceeccC-CcccccCCCc-cccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeeccccee-
Confidence 112234443 5777777653 222334445443 4555555443 2324455666677777766654332111000000
Q ss_pred CCCCcEEEccCCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCccccccChhhhcccccccEEe
Q 039967 188 LSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELE 267 (445)
Q Consensus 188 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 267 (445)
... . ......+.....+..+.+..... ......+..+..++.+.+... +.......+..+..|+.+.
T Consensus 180 ~~~--------~---~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~ 246 (379)
T 4h09_A 180 YNK--------N---KTILESYPAAKTGTEFTIPSTVK-TVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIA 246 (379)
T ss_dssp EET--------T---SSEEEECCTTCCCSEEECCTTCC-EECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEE
T ss_pred ccc--------c---cceecccccccccccccccccee-EEeecccccccccceeeeccc-eeEEccccccCCccceEEE
Confidence 000 0 00011112223333333322211 122334445556666655432 2233344555666666666
Q ss_pred cccCccCCCccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCccccccccCCCcceEEcccCccccCCCcc
Q 039967 268 LCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPE 347 (445)
Q Consensus 268 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 347 (445)
+..+ +.......+..+.+++.+.+..+ +......+|.+|++|+.+.+.++.+. .....+
T Consensus 247 lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~-------------------~I~~~a 305 (379)
T 4h09_A 247 IPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIE-------------------TLEPRV 305 (379)
T ss_dssp ECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCC-------------------EECTTT
T ss_pred cCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccc-------------------eehhhh
Confidence 6543 33344455666667777776543 33234456777777777776554332 123346
Q ss_pred ccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCCccC
Q 039967 348 IGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIEL 402 (445)
Q Consensus 348 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 402 (445)
+..|.+|+.+.+.++ ++.....+|.+|++|+.+.+..+ +......+|.+++.+
T Consensus 306 F~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~~ 358 (379)
T 4h09_A 306 FMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSIT 358 (379)
T ss_dssp TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSCC
T ss_pred hcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCCC
Confidence 677777888877644 44455667778888888888654 443445566665433
No 146
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.27 E-value=4.4e-14 Score=118.36 Aligned_cols=136 Identities=22% Similarity=0.297 Sum_probs=102.6
Q ss_pred ccCCccEEEcCCCcccCCCCc------cccccCccceeeccCccccccccCCCcceEEcccCccccCCCccccCCCCCcE
Q 039967 283 NLTGLLLLNMCENHLSGPIPK------SFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQV 356 (445)
Q Consensus 283 ~~~~L~~L~l~~~~~~~~~~~------~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 356 (445)
....++.++++++.+.+..+. .+..+++|+.|++++|.+ .. .+ .+..+++|++
T Consensus 16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l-------------------~~-l~-~~~~l~~L~~ 74 (198)
T 1ds9_A 16 ERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNI-------------------EK-IS-SLSGMENLRI 74 (198)
T ss_dssp HTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEE-------------------SC-CC-CHHHHTTCCE
T ss_pred hcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCC-------------------cc-cc-ccccCCCCCE
Confidence 334555555555555544333 555666666666655554 33 44 6778899999
Q ss_pred EECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCccccccC-ccccCCCCccEEeCCCCc
Q 039967 357 LDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIP-KSIGNLLRLCYLDLSNNQ 435 (445)
Q Consensus 357 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~l~l~~~~ 435 (445)
|++++|.+. .+|..+..+++|+.|++++|++.+ ++ .+..+++|+.|++++|++....+ ..+..+++|++|++++|+
T Consensus 75 L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 75 LSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp EEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred EECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCc
Confidence 999999998 667777888999999999999984 45 68889999999999999985443 578899999999999999
Q ss_pred ccccCCC
Q 039967 436 FGHKILV 442 (445)
Q Consensus 436 ~~~~~~~ 442 (445)
+.+.+|.
T Consensus 152 l~~~~~~ 158 (198)
T 1ds9_A 152 LYNDYKE 158 (198)
T ss_dssp HHHHHHT
T ss_pred ccccccc
Confidence 9876553
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.27 E-value=3.7e-13 Score=123.67 Aligned_cols=178 Identities=17% Similarity=0.166 Sum_probs=119.9
Q ss_pred cccccEEecccCccCCCccccccc-----cCCccEEEcCCCcccCCCCcc-ccccCccceeeccCccccccc--------
Q 039967 260 LTSLSELELCTNHLSGVIPHSIGN-----LTGLLLLNMCENHLSGPIPKS-FKNLTSVERVLLNQNNLSGKV-------- 325 (445)
Q Consensus 260 ~~~L~~L~l~~~~~~~~~~~~l~~-----~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~-------- 325 (445)
.+.|+.|++++|.+.......+.. .+.|+.|++++|.+.+..... ...+++|+.|++++|.+.+..
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 467899999999887544433332 268999999999886443222 335678999999999886432
Q ss_pred --cCCCcceEEcccCccccC----CCccccCCCCCcEEECCCCcccccc----chhhccccCCCEEEccCCeeecc----
Q 039967 326 --NVPKLGTFIISVNNISES----IPPEIGDSPKLQVLDLSSNNIVGEI----PVQLGKLFSLNKLILNLNQLSGG---- 391 (445)
Q Consensus 326 --~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~---- 391 (445)
..+.|+.|++++|.++.. +...+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+.+.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 246788899988887642 2333456788899999988887543 45566778889999998888643
Q ss_pred cchhhcCCccCceeecCCCccccccCccccCC---C--CccEEe--CCCCccc
Q 039967 392 MPLELGSLIELQYLDLSTNKLKSSIPKSIGNL---L--RLCYLD--LSNNQFG 437 (445)
Q Consensus 392 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~--~L~~l~--l~~~~~~ 437 (445)
+...+...++|+.|+|++|.++......+..+ . .|+.+. +.++.++
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred HHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 23344556788999999988876655555322 1 166666 6666655
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.25 E-value=2.8e-13 Score=124.55 Aligned_cols=178 Identities=18% Similarity=0.150 Sum_probs=112.1
Q ss_pred CCcccEEEeeCccccccChhhhcc-----cccccEEecccCccCCCccccc-cccCCccEEEcCCCcccCCCCccc----
Q 039967 236 LSSLRALYLYNNGLYSFVPEEIRY-----LTSLSELELCTNHLSGVIPHSI-GNLTGLLLLNMCENHLSGPIPKSF---- 305 (445)
Q Consensus 236 ~~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~---- 305 (445)
.+.|+.+++++|.+.......+.. .++|++|++++|.+.......+ ..+++|+.|++++|.+.+.....+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 357888888888776533333222 2578888888887764333333 345678888888887764433322
Q ss_pred -cccCccceeeccCcccccc---------ccCCCcceEEcccCccccCC----CccccCCCCCcEEECCCCcccccc---
Q 039967 306 -KNLTSVERVLLNQNNLSGK---------VNVPKLGTFIISVNNISESI----PPEIGDSPKLQVLDLSSNNIVGEI--- 368 (445)
Q Consensus 306 -~~~~~L~~L~l~~~~~~~~---------~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~--- 368 (445)
...+.|+.|++++|.+.+. ...++|+.|++++|.+.+.. ...+..++.|++|++++|.+++..
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 2357788888888887642 22678888888888876432 344566678888888888887543
Q ss_pred -chhhccccCCCEEEccCCeeecccchhhcCC---cc--Cceee--cCCCccc
Q 039967 369 -PVQLGKLFSLNKLILNLNQLSGGMPLELGSL---IE--LQYLD--LSTNKLK 413 (445)
Q Consensus 369 -~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~--L~~L~--l~~~~~~ 413 (445)
+..+..+++|++|++++|++.+.....+..+ .. |+.+. +.++.+.
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred HHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 3344566888888888888864444443322 11 66666 5555554
No 149
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.20 E-value=7.8e-11 Score=95.66 Aligned_cols=105 Identities=24% Similarity=0.222 Sum_probs=69.7
Q ss_pred ccEEEcCCCcccCCCCccccccCccceeeccCccccccccCCCcceEEcccCccccCCCccccCCCCCcEEECCCCcccc
Q 039967 287 LLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVG 366 (445)
Q Consensus 287 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 366 (445)
.+.++++++.+. .+|..+ .+.++.|++++| ++.+..+..+..+++|++|++++|.+++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N-------------------~i~~~~~~~~~~l~~L~~L~Ls~N~l~~ 68 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDN-------------------QITKLEPGVFDRLTQLTRLDLDNNQLTV 68 (170)
T ss_dssp TTEEECTTSCCS-SCCSCC--CTTCSEEECCSS-------------------CCCCCCTTTTTTCTTCSEEECCSSCCCC
T ss_pred CCEEEeCCCCcC-ccCccC--CCCCcEEEcCCC-------------------cCCccChhhhcCcccCCEEECCCCCcCc
Confidence 456777777766 344333 245555555555 4445556667777777777777777776
Q ss_pred ccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCccc
Q 039967 367 EIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLK 413 (445)
Q Consensus 367 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 413 (445)
..+..|..+++|+.|++++|++.+..+..+..+++|+.|++++|++.
T Consensus 69 l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 69 LPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 66666677777777777777777554555777777777777777765
No 150
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.12 E-value=5.3e-10 Score=91.03 Aligned_cols=103 Identities=25% Similarity=0.350 Sum_probs=47.6
Q ss_pred cEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcCEEeCCCccccccccccccCCCCCcEEEccCC
Q 039967 120 STMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNN 199 (445)
Q Consensus 120 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 199 (445)
+.++++++.++ .+|..+. ++|++|++++|.+....+..|.++++|+.|++++|.+....+..|..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 34555555544 2333332 45555555555554333444555555555555555544333333344455555555555
Q ss_pred ccCCCCCccccCCCCcCEEEccCccc
Q 039967 200 SLSGSLPPILGNLKSLSALGLHINQL 225 (445)
Q Consensus 200 ~~~~~~~~~~~~l~~L~~L~l~~~~~ 225 (445)
.+....+..+..+++|+.+++++|.+
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCB
T ss_pred ccceeCHHHhccccCCCEEEeCCCCc
Confidence 44433333344444444444444443
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.03 E-value=9e-10 Score=100.76 Aligned_cols=102 Identities=23% Similarity=0.144 Sum_probs=83.9
Q ss_pred EEcccC-ccccCCCccccCCCCCcEEECCC-CccccccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCC
Q 039967 333 FIISVN-NISESIPPEIGDSPKLQVLDLSS-NNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTN 410 (445)
Q Consensus 333 L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 410 (445)
++..++ .+. .+|. +..+++|++|+|++ |.+.+..+..|..+++|+.|+|++|.+.+..+..|.++++|+.|+|++|
T Consensus 13 v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 344444 454 4555 88888999999996 8888777788999999999999999998777788899999999999999
Q ss_pred ccccccCccccCCCCccEEeCCCCccc
Q 039967 411 KLKSSIPKSIGNLLRLCYLDLSNNQFG 437 (445)
Q Consensus 411 ~~~~~~~~~~~~~~~L~~l~l~~~~~~ 437 (445)
++....+..|..++ |++|++.+|+|.
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 99866666676666 999999999887
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.80 E-value=3.1e-09 Score=96.73 Aligned_cols=194 Identities=15% Similarity=0.169 Sum_probs=115.0
Q ss_pred CcccEEEeeCcccc-ccC-------hhhhcccccccEEecccCccC---------CCccccccccCCccEEEcCCCcccC
Q 039967 237 SSLRALYLYNNGLY-SFV-------PEEIRYLTSLSELELCTNHLS---------GVIPHSIGNLTGLLLLNMCENHLSG 299 (445)
Q Consensus 237 ~~L~~L~l~~~~~~-~~~-------~~~~~~~~~L~~L~l~~~~~~---------~~~~~~l~~~~~L~~L~l~~~~~~~ 299 (445)
++++.|.+..+... ... ......+++|+.|.+.+.... ......+..++.|+.|++.++.-.
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l- 185 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL- 185 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-
Confidence 35667766654322 111 122445678999988654221 112234566788999999887311
Q ss_pred CCCccccccCccceeeccCccccccc-------cCCCcceEEcccC--ccccC-----CCccc--cCCCCCcEEECCCCc
Q 039967 300 PIPKSFKNLTSVERVLLNQNNLSGKV-------NVPKLGTFIISVN--NISES-----IPPEI--GDSPKLQVLDLSSNN 363 (445)
Q Consensus 300 ~~~~~~~~~~~L~~L~l~~~~~~~~~-------~~~~L~~L~l~~~--~~~~~-----~~~~~--~~~~~L~~L~l~~~~ 363 (445)
..+. + ..++|+.|.+..+.+.... .+|+|+.|++..+ ...+. +...+ ..+|+|++|++.+|.
T Consensus 186 ~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~ 263 (362)
T 2ra8_A 186 SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE 263 (362)
T ss_dssp BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCT
T ss_pred eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCC
Confidence 1222 3 3778888888877765332 4788888887531 11111 11122 246888888888888
Q ss_pred cccccchhhc---cccCCCEEEccCCeeecccc----hhhcCCccCceeecCCCccccccCccccC-CCCccEEeCCCCc
Q 039967 364 IVGEIPVQLG---KLFSLNKLILNLNQLSGGMP----LELGSLIELQYLDLSTNKLKSSIPKSIGN-LLRLCYLDLSNNQ 435 (445)
Q Consensus 364 ~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~l~l~~~~ 435 (445)
+.+..+..+. .+++|++|+|+.|.+.+... ..+..+++|+.|++++|.++......+.. + ..++++++++
T Consensus 264 i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 264 EQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp THHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred CchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 7654433332 47788888888887764322 22344678888888888877655555543 2 3556776665
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.79 E-value=1.5e-08 Score=92.24 Aligned_cols=195 Identities=16% Similarity=0.183 Sum_probs=116.0
Q ss_pred CCcCEEEccCcccc-CC-------CCccccCCCcccEEEeeCcccc---------ccChhhhcccccccEEecccCccCC
Q 039967 213 KSLSALGLHINQLS-GV-------IPSSIGNLSSLRALYLYNNGLY---------SFVPEEIRYLTSLSELELCTNHLSG 275 (445)
Q Consensus 213 ~~L~~L~l~~~~~~-~~-------~~~~~~~~~~L~~L~l~~~~~~---------~~~~~~~~~~~~L~~L~l~~~~~~~ 275 (445)
..++.|.+...... .. ...+...+++|+.|.+...... ......+..+|+|+.|.+.++.-..
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~ 186 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS 186 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce
Confidence 34667776644322 11 0122345678888887654221 1133455667889999998763111
Q ss_pred CccccccccCCccEEEcCCCcccCCCCcccc--ccCccceeeccC--cc------cc------ccccCCCcceEEcccCc
Q 039967 276 VIPHSIGNLTGLLLLNMCENHLSGPIPKSFK--NLTSVERVLLNQ--NN------LS------GKVNVPKLGTFIISVNN 339 (445)
Q Consensus 276 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~--~~------~~------~~~~~~~L~~L~l~~~~ 339 (445)
. +. + ..++|++|++..|.+.......+. .+|+|+.|+|+. +. +. ....+|+|+.|++.+|.
T Consensus 187 l-~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~ 263 (362)
T 2ra8_A 187 I-GK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE 263 (362)
T ss_dssp C-CS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCT
T ss_pred e-cc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCC
Confidence 1 21 2 267899999888776543323333 678888888752 11 10 11237899999998887
Q ss_pred cccCCCccc---cCCCCCcEEECCCCcccccc----chhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCc
Q 039967 340 ISESIPPEI---GDSPKLQVLDLSSNNIVGEI----PVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNK 411 (445)
Q Consensus 340 ~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 411 (445)
+....+..+ ..++.|++|+++.|.+.+.. +..+..+++|+.|++++|.+.+.....+...- ...+++++++
T Consensus 264 i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al-g~~~~~~~~~ 341 (362)
T 2ra8_A 264 EQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL-PMKIDVSDSQ 341 (362)
T ss_dssp THHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC-CSEEECCSBC
T ss_pred CchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc-CCEEEecCCc
Confidence 753222212 25688999999988887543 33345678899999998887644333343210 2457777766
No 154
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.77 E-value=2.7e-08 Score=90.88 Aligned_cols=103 Identities=20% Similarity=0.170 Sum_probs=72.5
Q ss_pred eEEecCC-cCCCCccccccCCCCCcEEEccC-CcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcCEEeCCC
Q 039967 97 NFYLNNN-SLFNSIPLVLGNLNSLSTMDLSQ-NQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSE 174 (445)
Q Consensus 97 ~l~l~~~-~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 174 (445)
.++++++ .+. .+|. +..+.+|+.|+|++ |.++...+..|..+++|+.|++++|.+....+..|.++++|+.|++++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4566655 444 4666 77777888888875 777766666777788888888888877766666777788888888888
Q ss_pred ccccccccccccCCCCCcEEEccCCccC
Q 039967 175 NQLIGSIPLSFGNLSSLTLMSLFNNSLS 202 (445)
Q Consensus 175 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 202 (445)
|.+....+..+..++ |+.|.+.+|.+.
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 877754444444444 777777777765
No 155
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.73 E-value=3.8e-09 Score=84.37 Aligned_cols=83 Identities=18% Similarity=0.166 Sum_probs=40.9
Q ss_pred CCcEEECCCCccccccchhhccccCCCEEEccCCe-eecccchhhcCC----ccCceeecCCCc-cccccCccccCCCCc
Q 039967 353 KLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQ-LSGGMPLELGSL----IELQYLDLSTNK-LKSSIPKSIGNLLRL 426 (445)
Q Consensus 353 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~----~~L~~L~l~~~~-~~~~~~~~~~~~~~L 426 (445)
.|+.||+++|.+++.....+..|++|++|+|++|. +++..-..+..+ ++|+.|+|++|. +++.....+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 35555555555554444444555555555555553 332222333332 245555555553 444444445555555
Q ss_pred cEEeCCCCc
Q 039967 427 CYLDLSNNQ 435 (445)
Q Consensus 427 ~~l~l~~~~ 435 (445)
++|++++|+
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 555555554
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.51 E-value=2.1e-08 Score=82.31 Aligned_cols=119 Identities=17% Similarity=0.140 Sum_probs=76.8
Q ss_pred cccccCccceeeccCc-cccccccCCCcceEEcccCccccCCCccccCCCCCcEEECCCCcccccc----chhhccccCC
Q 039967 304 SFKNLTSVERVLLNQN-NLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEI----PVQLGKLFSL 378 (445)
Q Consensus 304 ~~~~~~~L~~L~l~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L 378 (445)
.+...+.|++|++++| .+.+... ..+...+...++|++|++++|.+.+.. ...+...++|
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~---------------~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L 95 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTL---------------KACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTL 95 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHH---------------HHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSC
T ss_pred HHhcCCCCCEEEecCCCCCCHHHH---------------HHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCc
Confidence 3445666777777666 5542211 012234455677888888888877543 3344556788
Q ss_pred CEEEccCCeeecc----cchhhcCCccCceeec--CCCccccccC----ccccCCCCccEEeCCCCccc
Q 039967 379 NKLILNLNQLSGG----MPLELGSLIELQYLDL--STNKLKSSIP----KSIGNLLRLCYLDLSNNQFG 437 (445)
Q Consensus 379 ~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l--~~~~~~~~~~----~~~~~~~~L~~l~l~~~~~~ 437 (445)
++|+|++|.+.+. +...+...++|+.|+| ++|.+..... ..+...++|++|++++|.+.
T Consensus 96 ~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 96 KSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp CEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred CEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 8888888887643 2345566678888888 7788776543 34455678888888888765
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.45 E-value=5e-08 Score=77.90 Aligned_cols=99 Identities=15% Similarity=0.064 Sum_probs=70.1
Q ss_pred CcceEEcccCccccCCCccccCCCCCcEEECCCCc-cccccchhhcc----ccCCCEEEccCCe-eecccchhhcCCccC
Q 039967 329 KLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNN-IVGEIPVQLGK----LFSLNKLILNLNQ-LSGGMPLELGSLIEL 402 (445)
Q Consensus 329 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~----~~~L~~L~l~~~~-~~~~~~~~~~~~~~L 402 (445)
.|+.|++++|.++......+..|++|++|++++|. +++.....+.. +++|++|+|++|. +++..-..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 45566666666655555567789999999999996 77665556655 4689999999996 665555667889999
Q ss_pred ceeecCCCc-ccccc--Cccc-cCCCCcc
Q 039967 403 QYLDLSTNK-LKSSI--PKSI-GNLLRLC 427 (445)
Q Consensus 403 ~~L~l~~~~-~~~~~--~~~~-~~~~~L~ 427 (445)
+.|++++|. +++.. ...+ ..+|+++
T Consensus 142 ~~L~L~~c~~Itd~gl~~~~L~~~lP~l~ 170 (176)
T 3e4g_A 142 KYLFLSDLPGVKEKEKIVQAFKTSLPSLE 170 (176)
T ss_dssp CEEEEESCTTCCCHHHHHHHHHHHCTTCE
T ss_pred CEEECCCCCCCCchHHHHHHHHHHCCCcE
Confidence 999999997 44321 1222 3566655
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.31 E-value=1.5e-07 Score=77.20 Aligned_cols=121 Identities=17% Similarity=0.141 Sum_probs=81.1
Q ss_pred ccccccCCccEEEcCCC-cccCC----CCccccccCccceeeccCccccccccCCCcceEEcccCccccCCCccccCCCC
Q 039967 279 HSIGNLTGLLLLNMCEN-HLSGP----IPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPK 353 (445)
Q Consensus 279 ~~l~~~~~L~~L~l~~~-~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 353 (445)
..+...+.|++|++++| .+.+. +...+...+.|++|++++|.+.+... ..+...+...+.
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~---------------~~l~~~L~~n~~ 94 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVA---------------FALAEMLKVNNT 94 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHH---------------HHHHHHHHHCSS
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHH---------------HHHHHHHHhCCC
Confidence 34566789999999999 87643 23345566788888888887653321 011223444577
Q ss_pred CcEEECCCCccccc----cchhhccccCCCEEEc--cCCeeecc----cchhhcCCccCceeecCCCcccc
Q 039967 354 LQVLDLSSNNIVGE----IPVQLGKLFSLNKLIL--NLNQLSGG----MPLELGSLIELQYLDLSTNKLKS 414 (445)
Q Consensus 354 L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l--~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~ 414 (445)
|++|++++|.+.+. +...+...++|++|++ ++|.+... +...+...++|+.|++++|.+..
T Consensus 95 L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 95 LKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp CCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred cCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence 88888888887754 3445566778888888 77877543 23345556788888888888753
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.04 E-value=4.5e-06 Score=71.92 Aligned_cols=80 Identities=26% Similarity=0.270 Sum_probs=49.5
Q ss_pred CCCCCcEEECCCCcccc--ccchhhccccCCCEEEccCCeeeccc-chhhcCCccCceeecCCCccccccC-------cc
Q 039967 350 DSPKLQVLDLSSNNIVG--EIPVQLGKLFSLNKLILNLNQLSGGM-PLELGSLIELQYLDLSTNKLKSSIP-------KS 419 (445)
Q Consensus 350 ~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~-------~~ 419 (445)
.++.|+.|++++|.+.+ .++..+..+++|+.|+|++|.+.+.. ...+..+ +|+.|++++|++.+..+ ..
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHHH
Confidence 45677777777777765 23355567777777777777776431 1222333 77777777777764332 23
Q ss_pred ccCCCCccEEe
Q 039967 420 IGNLLRLCYLD 430 (445)
Q Consensus 420 ~~~~~~L~~l~ 430 (445)
+..+|+|+.|+
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 55677777665
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.03 E-value=1.1e-06 Score=75.79 Aligned_cols=90 Identities=27% Similarity=0.243 Sum_probs=64.6
Q ss_pred CCCcE--EECCCCccc---cccchhhccccCCCEEEccCCeeec--ccchhhcCCccCceeecCCCcccccc-CccccCC
Q 039967 352 PKLQV--LDLSSNNIV---GEIPVQLGKLFSLNKLILNLNQLSG--GMPLELGSLIELQYLDLSTNKLKSSI-PKSIGNL 423 (445)
Q Consensus 352 ~~L~~--L~l~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~ 423 (445)
+.|+. ++++.|... ........++++|+.|+|++|.+.+ .++..+..+++|+.|+|++|.+.+.. ...+..+
T Consensus 141 p~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l 220 (267)
T 3rw6_A 141 PDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL 220 (267)
T ss_dssp HHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS
T ss_pred cchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC
Confidence 44544 556666433 1222233578999999999999986 33456778999999999999998651 2233334
Q ss_pred CCccEEeCCCCcccccCCC
Q 039967 424 LRLCYLDLSNNQFGHKILV 442 (445)
Q Consensus 424 ~~L~~l~l~~~~~~~~~~~ 442 (445)
.|++|++.+|++.+++|+
T Consensus 221 -~L~~L~L~~Npl~~~~~~ 238 (267)
T 3rw6_A 221 -KLEELWLDGNSLCDTFRD 238 (267)
T ss_dssp -CCSEEECTTSTTGGGCSS
T ss_pred -CcceEEccCCcCccccCc
Confidence 999999999999987763
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.22 E-value=0.00012 Score=59.45 Aligned_cols=89 Identities=12% Similarity=0.045 Sum_probs=54.5
Q ss_pred cccCCCCCcEEECCCCccccccc----hhhccccCCCEEEccCCeeeccc----chhhcCCccCceeecCCCcc---ccc
Q 039967 347 EIGDSPKLQVLDLSSNNIVGEIP----VQLGKLFSLNKLILNLNQLSGGM----PLELGSLIELQYLDLSTNKL---KSS 415 (445)
Q Consensus 347 ~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~---~~~ 415 (445)
.+..-+.|+.|+|++|.+.+... ..+...++|++|+|++|.+.... .+.+..-..|+.|+|++|.. ...
T Consensus 65 aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~ 144 (197)
T 1pgv_A 65 AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQ 144 (197)
T ss_dssp HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHH
T ss_pred HHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHH
Confidence 44455677788888777775433 33445677888888888775322 23445556788888876532 221
Q ss_pred ----cCccccCCCCccEEeCCCCc
Q 039967 416 ----IPKSIGNLLRLCYLDLSNNQ 435 (445)
Q Consensus 416 ----~~~~~~~~~~L~~l~l~~~~ 435 (445)
..+++..-+.|++|+++.|.
T Consensus 145 g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 145 VEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHHHHhCCCcCeEeccCCC
Confidence 22345566777777777654
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.96 E-value=0.00063 Score=55.30 Aligned_cols=87 Identities=14% Similarity=0.138 Sum_probs=67.7
Q ss_pred ccCCCCCcEEECCCC-ccccc----cchhhccccCCCEEEccCCeeecc----cchhhcCCccCceeecCCCccccccC-
Q 039967 348 IGDSPKLQVLDLSSN-NIVGE----IPVQLGKLFSLNKLILNLNQLSGG----MPLELGSLIELQYLDLSTNKLKSSIP- 417 (445)
Q Consensus 348 ~~~~~~L~~L~l~~~-~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~- 417 (445)
+..-+.|++|+++++ .+.+. +...+..-+.|+.|+|++|++.+. +.+.+..-+.|+.|+|++|.+...+.
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 345688999999986 77643 445667789999999999999643 33445566899999999999987654
Q ss_pred ---ccccCCCCccEEeCCCC
Q 039967 418 ---KSIGNLLRLCYLDLSNN 434 (445)
Q Consensus 418 ---~~~~~~~~L~~l~l~~~ 434 (445)
+++..-+.|++|++++|
T Consensus 117 ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHhhCCceeEEECCCC
Confidence 45667778999999876
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.69 E-value=0.0023 Score=48.45 Aligned_cols=55 Identities=22% Similarity=0.306 Sum_probs=26.6
Q ss_pred EEECCCCccc-cccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCcc
Q 039967 356 VLDLSSNNIV-GEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKL 412 (445)
Q Consensus 356 ~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 412 (445)
.++.++..++ ..+|..+ .+++++|+|++|.+....+..|..+++|+.|+|++|..
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 4555555543 1333222 12455555555555533334445555555555555544
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.55 E-value=0.03 Score=42.24 Aligned_cols=38 Identities=26% Similarity=0.200 Sum_probs=30.4
Q ss_pred CCCcEEECCCCccccccchhhccccCCCEEEccCCeee
Q 039967 352 PKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLS 389 (445)
Q Consensus 352 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 389 (445)
++|++|+|++|.++...+..|..+++|+.|+|.+|++.
T Consensus 31 ~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 46888888888888666677788888888888888774
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=86.47 E-value=1.5 Score=30.92 Aligned_cols=48 Identities=8% Similarity=0.059 Sum_probs=30.6
Q ss_pred CcCCCCCCcccCCCCCCcEEeccCcccCCCCCccccCCCCCcEEEecCc
Q 039967 17 NILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVN 65 (445)
Q Consensus 17 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 65 (445)
..++.+....|.+|.+|+.+.+..+ ++.+...+|.+|.+|+.+.+...
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 3455555666777777777777654 33355667777777777776543
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=83.18 E-value=2 Score=30.25 Aligned_cols=39 Identities=13% Similarity=0.090 Sum_probs=25.4
Q ss_pred CccCCCCCcEEeccCCcCCCCCCcccCCCCCCcEEeccCc
Q 039967 2 AFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSN 41 (445)
Q Consensus 2 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 41 (445)
+|..|.+|+.+.|... ++.+-...|.+|.+|+.+.+.+.
T Consensus 15 aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 15 LFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp TTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred HhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 5667777777777654 45555666777777777766554
Done!