Query 039968
Match_columns 165
No_of_seqs 124 out of 1177
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 03:49:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039968.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039968hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK12852 groEL chaperonin GroE 100.0 2.9E-37 6.3E-42 276.0 17.3 162 3-165 304-498 (545)
2 PRK00013 groEL chaperonin GroE 100.0 6.1E-37 1.3E-41 273.7 17.1 162 3-165 303-497 (542)
3 CHL00093 groEL chaperonin GroE 100.0 1.2E-36 2.7E-41 271.2 16.2 162 2-165 303-498 (529)
4 PRK12849 groEL chaperonin GroE 100.0 2.2E-36 4.8E-41 270.2 17.0 161 3-165 303-496 (542)
5 cd03344 GroEL GroEL_like type 100.0 2.7E-36 5.8E-41 268.5 17.1 161 3-165 301-494 (520)
6 PRK12851 groEL chaperonin GroE 100.0 2.5E-36 5.4E-41 269.8 16.4 161 3-165 304-497 (541)
7 PRK12850 groEL chaperonin GroE 100.0 2.6E-36 5.6E-41 269.8 16.1 161 3-165 304-497 (544)
8 TIGR02348 GroEL chaperonin Gro 100.0 3.7E-36 8E-41 267.8 16.8 161 3-165 302-495 (524)
9 PTZ00114 Heat shock protein 60 100.0 4.4E-36 9.5E-41 268.9 17.2 161 4-165 317-513 (555)
10 PRK14104 chaperonin GroEL; Pro 100.0 5.3E-36 1.2E-40 267.9 17.1 162 3-165 304-498 (546)
11 cd03342 TCP1_zeta TCP-1 (CTT o 100.0 8.3E-36 1.8E-40 263.3 16.5 154 7-165 293-456 (484)
12 TIGR02347 chap_CCT_zeta T-comp 100.0 2.4E-35 5.2E-40 263.0 16.7 154 7-165 336-499 (531)
13 PTZ00212 T-complex protein 1 s 100.0 2.3E-35 5E-40 263.1 15.7 154 7-165 336-499 (533)
14 cd03343 cpn60 cpn60 chaperonin 100.0 8.5E-35 1.9E-39 258.3 16.5 154 7-165 327-490 (517)
15 cd03336 TCP1_beta TCP-1 (CTT o 100.0 1.7E-34 3.6E-39 256.7 17.0 154 7-165 324-487 (517)
16 cd03341 TCP1_theta TCP-1 (CTT 100.0 1.5E-34 3.3E-39 254.5 16.4 154 7-165 279-445 (472)
17 TIGR02339 thermosome_arch ther 100.0 1.8E-34 3.9E-39 256.5 16.3 154 7-165 330-493 (519)
18 PLN03167 Chaperonin-60 beta su 100.0 8.4E-35 1.8E-39 262.4 14.2 162 3-165 358-554 (600)
19 cd03339 TCP1_epsilon TCP-1 (CT 100.0 1.6E-34 3.5E-39 257.3 15.8 154 7-165 335-501 (526)
20 TIGR02341 chap_CCT_beta T-comp 100.0 3.8E-34 8.3E-39 254.6 16.7 154 7-165 325-488 (519)
21 cd03335 TCP1_alpha TCP-1 (CTT 100.0 2.6E-34 5.6E-39 256.0 15.4 152 9-165 330-499 (527)
22 TIGR02344 chap_CCT_gamma T-com 100.0 3.5E-34 7.6E-39 255.0 16.2 154 7-165 330-495 (525)
23 cd03338 TCP1_delta TCP-1 (CTT 100.0 5.6E-34 1.2E-38 253.1 16.3 154 7-165 325-489 (515)
24 TIGR02340 chap_CCT_alpha T-com 100.0 5.6E-34 1.2E-38 254.3 16.2 152 9-165 334-503 (536)
25 TIGR02342 chap_CCT_delta T-com 100.0 6.5E-34 1.4E-38 253.0 16.0 154 7-165 326-490 (517)
26 TIGR02345 chap_CCT_eta T-compl 100.0 1.1E-33 2.3E-38 251.9 16.0 154 7-165 330-493 (522)
27 TIGR02343 chap_CCT_epsi T-comp 100.0 1.1E-33 2.3E-38 252.4 15.5 154 7-165 339-505 (532)
28 cd03340 TCP1_eta TCP-1 (CTT or 100.0 1.9E-33 4.2E-38 250.0 16.6 154 7-165 329-493 (522)
29 TIGR02346 chap_CCT_theta T-com 100.0 2E-33 4.3E-38 250.6 16.4 154 7-165 327-493 (531)
30 cd03337 TCP1_gamma TCP-1 (CTT 100.0 2.6E-33 5.7E-38 247.1 15.0 154 7-165 289-454 (480)
31 KOG0357 Chaperonin complex com 100.0 2.3E-33 4.9E-38 233.7 9.8 154 7-165 203-369 (400)
32 COG0459 GroL Chaperonin GroEL 100.0 7.6E-33 1.7E-37 246.2 13.7 154 7-165 320-487 (524)
33 cd00309 chaperonin_type_I_II c 100.0 3.8E-32 8.2E-37 238.4 17.9 154 7-165 276-439 (464)
34 PF00118 Cpn60_TCP1: TCP-1/cpn 100.0 7.9E-30 1.7E-34 223.0 16.7 154 7-165 293-457 (485)
35 KOG0356 Mitochondrial chaperon 100.0 8.8E-31 1.9E-35 228.7 9.7 159 3-165 317-510 (550)
36 KOG0361 Chaperonin complex com 100.0 8.6E-31 1.9E-35 222.0 8.5 153 8-165 334-496 (543)
37 KOG0358 Chaperonin complex com 100.0 8.6E-29 1.9E-33 209.5 9.5 154 7-165 342-507 (534)
38 KOG0363 Chaperonin complex com 100.0 3.6E-28 7.8E-33 205.1 10.0 154 6-164 328-491 (527)
39 KOG0359 Chaperonin complex com 99.9 3.3E-26 7.3E-31 195.8 12.7 153 7-164 327-487 (520)
40 KOG0364 Chaperonin complex com 99.9 1.6E-24 3.4E-29 185.8 8.6 154 7-165 330-494 (527)
41 KOG0360 Chaperonin complex com 99.9 3.2E-23 6.9E-28 179.0 7.2 151 9-165 341-509 (545)
42 KOG0362 Chaperonin complex com 99.9 2.2E-21 4.7E-26 168.4 12.6 153 7-164 330-493 (537)
43 cd03333 chaperonin_like chaper 99.1 3.6E-10 7.8E-15 89.5 8.6 67 7-77 140-209 (209)
44 cd03334 Fab1_TCP TCP-1 like do 99.1 4.1E-10 9E-15 92.8 7.3 66 9-78 181-254 (261)
45 KOG2663 Acetolactate synthase, 62.5 8.7 0.00019 32.1 3.1 26 46-72 122-147 (309)
46 PF07278 DUF1441: Protein of u 54.6 96 0.0021 23.8 7.8 65 57-137 66-131 (152)
47 KOG0230 Phosphatidylinositol-4 53.8 8.1 0.00018 39.3 1.8 78 7-89 492-578 (1598)
48 smart00574 POX domain associat 46.5 52 0.0011 24.9 4.8 42 55-97 84-126 (140)
49 cd04240 AAK_UC AAK_UC: Unchara 41.3 65 0.0014 25.3 5.0 9 78-87 28-36 (203)
50 PF07526 POX: Associated with 40.3 52 0.0011 24.7 4.0 42 55-97 84-126 (140)
51 COG3797 Uncharacterized protei 40.1 26 0.00056 27.5 2.4 51 46-97 10-62 (178)
52 COG3962 Acetolactate synthase 36.4 24 0.00052 32.2 1.9 38 62-100 217-254 (617)
53 PF09454 Vps23_core: Vps23 cor 36.0 1.2E+02 0.0026 19.6 6.2 37 56-95 16-52 (65)
54 PRK12784 hypothetical protein; 28.1 58 0.0012 22.3 2.3 24 7-30 4-27 (84)
55 cd07603 BAR_ACAPs The Bin/Amph 24.9 3.5E+02 0.0075 21.4 6.6 64 53-119 7-73 (200)
56 PF07685 GATase_3: CobB/CobQ-l 24.6 2.3E+02 0.0049 21.1 5.3 51 46-97 10-61 (158)
57 KOG2829 E2F-like protein [Tran 23.7 73 0.0016 27.2 2.6 21 54-74 91-111 (326)
58 PF08988 DUF1895: Protein of u 22.0 1.7E+02 0.0037 19.2 3.6 27 52-78 11-37 (68)
59 TIGR02159 PA_CoA_Oxy4 phenylac 21.2 3E+02 0.0066 20.6 5.4 45 12-70 10-54 (146)
No 1
>PRK12852 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=2.9e-37 Score=275.99 Aligned_cols=162 Identities=37% Similarity=0.581 Sum_probs=145.3
Q ss_pred CCCCCCCCCCcCCceeeeEEEEeecceEEEeccccc----------ee-ecc-----------cc---------eEEEcC
Q 039968 3 TLWCKIPDFDLEHIMSRFWVIVSKNETIVLGRCLSM----------QE-IEE-----------ER---------SGQVGG 51 (165)
Q Consensus 3 ~~~~~l~~~~~~~LG~a~~v~v~~~~~~~i~~~~~~----------~~-~~~-----------er---------tI~vrG 51 (165)
+.|.+++++++++||+|++|++++++|++++.+... +. .++ +| ||+|||
T Consensus 304 ~~~~~l~~~~~~~lG~~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~R~~~l~~~~~tI~irG 383 (545)
T PRK12852 304 DLGIKLENVTLKMLGRAKKVVIDKENTTIVNGAGKKADIEARVGQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGG 383 (545)
T ss_pred CcCCCcCCCCHHHCCCCcEEEEEccEEEEEeCCCCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 457789999999999999999999999999755432 11 100 12 699999
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhcCcccCCcchHHHHHHHHHHHHhccChhHHHHHHHHHHHHhHHHHHHHHhcCCCh
Q 039968 52 SSKADVRKKKKIVTNALNAAKAAMEEGILPGGGGISLLHASKELDELEITNSSQKIGVQIIQNALKMPVHAIASSAGVAG 131 (165)
Q Consensus 52 ~t~~~l~E~~~~i~Dal~~~~~al~~gvVpGG~G~~e~~~~~~L~~~~~~~~~~~~g~~~~~~AL~~~~~~la~NaG~d~ 131 (165)
+|+++++|++|+++||+|++|+++++|||||| |++|+++++.|+++...++.+|+|+++|++||+.||++||+|||+|+
T Consensus 384 ~t~~~l~E~er~i~DAl~a~~~a~~~g~VpGG-Ga~e~~~s~~L~~~~~~~~~~q~~i~~~a~AL~~ip~~La~NaG~d~ 462 (545)
T PRK12852 384 ATEVEVKEKKDRVEDALNATRAAVQEGIVPGG-GVALLRAKKAVGRINNDNADVQAGINIVLKALEAPIRQIAENAGVEG 462 (545)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhcCCCcCc-hHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 99999999999999999999999999999999 99999999999998766788999999999999999999999999999
Q ss_pred HH-HHHHHhcCCCceeEeecCCcee-eccCccccCC
Q 039968 132 SF-VGKLLAQENHDLACDATTERLV-LKELRISDRA 165 (165)
Q Consensus 132 ~~-v~~l~~~~~~~~G~d~~~~~~~-~~~~gI~dp~ 165 (165)
.+ +++|++.+++++|||+.+|+++ |++.|||||.
T Consensus 463 ~~vl~~l~~~~~~~~G~d~~~g~~~d~~~~GI~Dp~ 498 (545)
T PRK12852 463 SIVVGKILENKSETFGFDAQTEEYVDMVAKGIIDPA 498 (545)
T ss_pred HHHHHHHHhhcCCCeeEeCcCCCcccHHhCcCCcCh
Confidence 99 9999876667899999999999 9999999995
No 2
>PRK00013 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=6.1e-37 Score=273.74 Aligned_cols=162 Identities=35% Similarity=0.525 Sum_probs=145.4
Q ss_pred CCCCCCCCCCcCCceeeeEEEEeecceEEEeccccceee-----------cc-----------cc---------eEEEcC
Q 039968 3 TLWCKIPDFDLEHIMSRFWVIVSKNETIVLGRCLSMQEI-----------EE-----------ER---------SGQVGG 51 (165)
Q Consensus 3 ~~~~~l~~~~~~~LG~a~~v~v~~~~~~~i~~~~~~~~~-----------~~-----------er---------tI~vrG 51 (165)
+.|.+++++++++||+|++|++++++|++++++...+.+ +. || ||+|||
T Consensus 303 ~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eRi~~l~g~~~tI~irG 382 (542)
T PRK00013 303 ELGLKLEDATLEDLGQAKKVVVTKDNTTIVDGAGDKEAIKARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIKVGA 382 (542)
T ss_pred cccCCcccCCHHHCCeeeEEEEecCEEEEEeCCCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 467789999999999999999999999999866654310 00 22 599999
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhcCcccCCcchHHHHHHHHHHHHhccChhHHHHHHHHHHHHhHHHHHHHHhcCCCh
Q 039968 52 SSKADVRKKKKIVTNALNAAKAAMEEGILPGGGGISLLHASKELDELEITNSSQKIGVQIIQNALKMPVHAIASSAGVAG 131 (165)
Q Consensus 52 ~t~~~l~E~~~~i~Dal~~~~~al~~gvVpGG~G~~e~~~~~~L~~~~~~~~~~~~g~~~~~~AL~~~~~~la~NaG~d~ 131 (165)
+|+++++|++|+++||+|++|+++++|||||| |++|+++++.|+++...++++|+|+++|++||+.||++||+|||+|+
T Consensus 383 ~t~~~l~E~er~i~Dal~~vk~al~~g~VpGG-Ga~e~~~s~~L~~~~~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~ 461 (542)
T PRK00013 383 ATEVEMKEKKDRVEDALHATRAAVEEGIVPGG-GVALLRAAPALEALKGLNGDEATGINIVLRALEAPLRQIAENAGLEG 461 (542)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHcCcccCc-HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 99999999999999999999999999999999 99999999999998333889999999999999999999999999999
Q ss_pred HH-HHHHHhcCCCceeEeecCCcee-eccCccccCC
Q 039968 132 SF-VGKLLAQENHDLACDATTERLV-LKELRISDRA 165 (165)
Q Consensus 132 ~~-v~~l~~~~~~~~G~d~~~~~~~-~~~~gI~dp~ 165 (165)
.+ +.+|++.++.++|||+.+|++. |++.|||||.
T Consensus 462 ~~vl~~l~~~~~~~~G~d~~~g~~~d~~~~gI~Dp~ 497 (542)
T PRK00013 462 SVVVEKVKNGKGKGYGYNAATGEYVDMIEAGIIDPT 497 (542)
T ss_pred HHHHHHHHhhcCCCEeEeCCCCceeehhhccCeecH
Confidence 99 9999875567899999999999 9999999994
No 3
>CHL00093 groEL chaperonin GroEL
Probab=100.00 E-value=1.2e-36 Score=271.15 Aligned_cols=162 Identities=32% Similarity=0.533 Sum_probs=144.9
Q ss_pred CCCCCCCCCCCcCCceeeeEEEEeecceEEEe---------cccccee-ecc-----------cc---------eEEEcC
Q 039968 2 PTLWCKIPDFDLEHIMSRFWVIVSKNETIVLG---------RCLSMQE-IEE-----------ER---------SGQVGG 51 (165)
Q Consensus 2 ~~~~~~l~~~~~~~LG~a~~v~v~~~~~~~i~---------~~~~~~~-~~~-----------er---------tI~vrG 51 (165)
+|.|.+++++++++||+|+.|++++++|+|++ +|+.++. ++. || ||+|||
T Consensus 303 ~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~eR~~~l~g~~~~I~irg 382 (529)
T CHL00093 303 EDAGLSLETIQLDLLGQARRIIVTKDSTTIIADGNEEQVKARCEQLRKQIEIADSSYEKEKLQERLAKLSGGVAVIKVGA 382 (529)
T ss_pred ccccCCcCCCCHHHCCcceEEEEecCEEEEEecCcHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 35678899999999999999999999999887 4555442 111 22 499999
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhcCcccCCcchHHHHHHHHHHHHhc-c-ChhHHHHHHHHHHHHhHHHHHHHHhcCC
Q 039968 52 SSKADVRKKKKIVTNALNAAKAAMEEGILPGGGGISLLHASKELDELEI-T-NSSQKIGVQIIQNALKMPVHAIASSAGV 129 (165)
Q Consensus 52 ~t~~~l~E~~~~i~Dal~~~~~al~~gvVpGG~G~~e~~~~~~L~~~~~-~-~~~~~~g~~~~~~AL~~~~~~la~NaG~ 129 (165)
+|+++++|++|+++||+|++|+++++|+|||| |++|++++..|++++. . ++++|+|+++|++||+.||++||+|||+
T Consensus 383 ~t~~~l~E~er~i~DAl~a~r~a~~~gvVpGG-Ga~e~~~s~~L~~~~~~~~~g~~~~~i~~~a~AL~~ip~~La~NaG~ 461 (529)
T CHL00093 383 ATETEMKDKKLRLEDAINATKAAVEEGIVPGG-GATLVHLSENLKTWAKNNLKEDELIGALIVARAILAPLKRIAENAGK 461 (529)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHcCcccCC-cHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999 9999999999999865 4 8899999999999999999999999999
Q ss_pred ChHH-HHHHHhcCCCceeEeecCCcee-eccCccccCC
Q 039968 130 AGSF-VGKLLAQENHDLACDATTERLV-LKELRISDRA 165 (165)
Q Consensus 130 d~~~-v~~l~~~~~~~~G~d~~~~~~~-~~~~gI~dp~ 165 (165)
|+.+ +.+|+.. +.++|||+.+|++. |++.|||||.
T Consensus 462 d~~~v~~~l~~~-~~~~G~d~~~g~~~d~~~~GI~Dp~ 498 (529)
T CHL00093 462 NGSVIIEKVQEQ-DFEIGYNAANNKFVNMYEAGIIDPA 498 (529)
T ss_pred CHHHHHHHHHcc-CCCEeEECCCCcccchHhccCEEcH
Confidence 9999 9999765 45899999999999 9999999994
No 4
>PRK12849 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=2.2e-36 Score=270.16 Aligned_cols=161 Identities=37% Similarity=0.556 Sum_probs=144.4
Q ss_pred CCCCCCCCCCcCCceeeeEEEEeecceEEEecccccee-----------ecc-----------cc---------eEEEcC
Q 039968 3 TLWCKIPDFDLEHIMSRFWVIVSKNETIVLGRCLSMQE-----------IEE-----------ER---------SGQVGG 51 (165)
Q Consensus 3 ~~~~~l~~~~~~~LG~a~~v~v~~~~~~~i~~~~~~~~-----------~~~-----------er---------tI~vrG 51 (165)
+.+.+++++++++||+|++|++++++|++++.+...++ +++ || ||+|||
T Consensus 303 ~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~g~~~~~~i~~r~~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~TI~irG 382 (542)
T PRK12849 303 DLGLKLEEVTLDDLGRAKRVTITKDNTTIVDGAGDKEAIEARVAQIRRQIEETTSDYDREKLQERLAKLAGGVAVIKVGA 382 (542)
T ss_pred cccCCcccCCHHHCceeeEEEEeeeeEEEEeCCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 45668999999999999999999999999976655421 100 22 799999
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhcCcccCCcchHHHHHHHHHHHHhccChhHHHHHHHHHHHHhHHHHHHHHhcCCCh
Q 039968 52 SSKADVRKKKKIVTNALNAAKAAMEEGILPGGGGISLLHASKELDELEITNSSQKIGVQIIQNALKMPVHAIASSAGVAG 131 (165)
Q Consensus 52 ~t~~~l~E~~~~i~Dal~~~~~al~~gvVpGG~G~~e~~~~~~L~~~~~~~~~~~~g~~~~~~AL~~~~~~la~NaG~d~ 131 (165)
+|+++++|++|+++||+|++|+++++|||||| |++|++++..|++++..++++|+|+++|++||+.||++||+|||+|+
T Consensus 383 ~t~~~l~E~er~i~DAl~~~~~a~~~g~VpGG-Ga~e~~ls~~L~~~~~~~g~~~~~i~~~a~Al~~ip~~La~NaG~d~ 461 (542)
T PRK12849 383 ATEVELKERKDRVEDALNATRAAVEEGIVPGG-GVALLRAAKALDELAGLNGDQAAGVEIVRRALEAPLRQIAENAGLDG 461 (542)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHcCeecCC-CHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHCCCCH
Confidence 99999999999999999999999999999999 99999999999998833899999999999999999999999999999
Q ss_pred HH-HHHHHhcCCCceeEeecCCcee-eccCccccCC
Q 039968 132 SF-VGKLLAQENHDLACDATTERLV-LKELRISDRA 165 (165)
Q Consensus 132 ~~-v~~l~~~~~~~~G~d~~~~~~~-~~~~gI~dp~ 165 (165)
.+ +.+|++.+ .++|||+.+|++. |++.|||||+
T Consensus 462 ~~vi~~L~~~~-~~~G~d~~~g~~~d~~~~GV~Dp~ 496 (542)
T PRK12849 462 SVVVAKVLELE-DGFGFNAATGEYGDLIAAGIIDPV 496 (542)
T ss_pred HHHHHHHHhhC-CCcceeCCCCccccHHhccCccCH
Confidence 99 99998764 5799999999999 9999999995
No 5
>cd03344 GroEL GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=2.7e-36 Score=268.50 Aligned_cols=161 Identities=41% Similarity=0.635 Sum_probs=144.6
Q ss_pred CCCCCCCCCCcCCceeeeEEEEeecceEEEeccccce----------e-ecc-----------cc---------eEEEcC
Q 039968 3 TLWCKIPDFDLEHIMSRFWVIVSKNETIVLGRCLSMQ----------E-IEE-----------ER---------SGQVGG 51 (165)
Q Consensus 3 ~~~~~l~~~~~~~LG~a~~v~v~~~~~~~i~~~~~~~----------~-~~~-----------er---------tI~vrG 51 (165)
+.+.+++++++++||+|++|++++++|++++.+...+ . +++ || ||+|||
T Consensus 301 ~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~TI~irG 380 (520)
T cd03344 301 ELGLKLEDVTLEDLGRAKKVVVTKDDTTIIGGAGDKAAIKARIAQIRKQIEETTSDYDKEKLQERLAKLSGGVAVIKVGG 380 (520)
T ss_pred cccCCcccCCHHHCCcceEEEEeeceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEEec
Confidence 4567889999999999999999999999998665432 1 110 22 799999
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhcCcccCCcchHHHHHHHHHHHHhccChhHHHHHHHHHHHHhHHHHHHHHhcCCCh
Q 039968 52 SSKADVRKKKKIVTNALNAAKAAMEEGILPGGGGISLLHASKELDELEITNSSQKIGVQIIQNALKMPVHAIASSAGVAG 131 (165)
Q Consensus 52 ~t~~~l~E~~~~i~Dal~~~~~al~~gvVpGG~G~~e~~~~~~L~~~~~~~~~~~~g~~~~~~AL~~~~~~la~NaG~d~ 131 (165)
+|+++++|++|+++||+|++|+++++|||||| |++|+++++.|++++..++++|+|+++|++||+.||++||+|||+|+
T Consensus 381 ~t~~~l~E~~r~i~Dal~~~k~a~~~g~VpGG-Ga~e~~~s~~L~~~~~~~~~~~~~~~~~a~Al~~ip~~La~NaG~d~ 459 (520)
T cd03344 381 ATEVELKEKKDRVEDALNATRAAVEEGIVPGG-GVALLRASPALDKLKALNGDEKLGIEIVRRALEAPLRQIAENAGVDG 459 (520)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhcCCCcCC-cHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 99999999999999999999999999999999 99999999999998767889999999999999999999999999999
Q ss_pred HH-HHHHHhcCCCceeEeecCCcee-eccCccccCC
Q 039968 132 SF-VGKLLAQENHDLACDATTERLV-LKELRISDRA 165 (165)
Q Consensus 132 ~~-v~~l~~~~~~~~G~d~~~~~~~-~~~~gI~dp~ 165 (165)
.+ +++|++... ++|||+.+|++. |++.|||||.
T Consensus 460 ~~vi~~l~~~~~-~~G~d~~~g~~~d~~~~gV~Dp~ 494 (520)
T cd03344 460 SVVVEKVLESPD-GFGYDAATGEYVDMIEAGIIDPT 494 (520)
T ss_pred HHHHHHHHhhcC-CEeEECCCCcccchHhccCeecH
Confidence 99 999987654 899999999999 9999999994
No 6
>PRK12851 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=2.5e-36 Score=269.80 Aligned_cols=161 Identities=41% Similarity=0.582 Sum_probs=144.2
Q ss_pred CCCCCCCCCCcCCceeeeEEEEeecceEEEecccccee-----------ecc-----------cc---------eEEEcC
Q 039968 3 TLWCKIPDFDLEHIMSRFWVIVSKNETIVLGRCLSMQE-----------IEE-----------ER---------SGQVGG 51 (165)
Q Consensus 3 ~~~~~l~~~~~~~LG~a~~v~v~~~~~~~i~~~~~~~~-----------~~~-----------er---------tI~vrG 51 (165)
+.+.+++++++++||+|++|++++++|++++.+...++ ++. +| ||+|||
T Consensus 304 ~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~ri~~l~g~~~tI~irG 383 (541)
T PRK12851 304 DLGIKLENVTLEQLGRAKKVVVEKENTTIIDGAGSKTEIEGRVAQIRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGA 383 (541)
T ss_pred CCCCCcCcCCHHHcCCccEEEEEcceEEEEcCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 35678999999999999999999999999986655321 000 12 599999
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhcCcccCCcchHHHHHHHHHHHHhccChhHHHHHHHHHHHHhHHHHHHHHhcCCCh
Q 039968 52 SSKADVRKKKKIVTNALNAAKAAMEEGILPGGGGISLLHASKELDELEITNSSQKIGVQIIQNALKMPVHAIASSAGVAG 131 (165)
Q Consensus 52 ~t~~~l~E~~~~i~Dal~~~~~al~~gvVpGG~G~~e~~~~~~L~~~~~~~~~~~~g~~~~~~AL~~~~~~la~NaG~d~ 131 (165)
+|+++++|++|+++||||++|+++++|||||| |++|++++..|+++...++++|+|+++|++||+.||++||+|||+|+
T Consensus 384 ~t~~~l~E~er~i~DAl~a~~~al~~g~VpGG-Ga~e~~~s~~L~~~~~~~~~~~~~~~~~a~AL~~ip~~La~NaG~d~ 462 (541)
T PRK12851 384 STEVEVKEKKDRVDDALHATRAAVEEGIVPGG-GVALLRAVKALDKLETANGDQRTGVEIVRRALEAPVRQIAENAGAEG 462 (541)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHcCcccCc-hHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 99999999999999999999999999999999 99999999999998766889999999999999999999999999999
Q ss_pred HH-HHHHHhcCCCceeEeecCCcee-eccCccccCC
Q 039968 132 SF-VGKLLAQENHDLACDATTERLV-LKELRISDRA 165 (165)
Q Consensus 132 ~~-v~~l~~~~~~~~G~d~~~~~~~-~~~~gI~dp~ 165 (165)
.+ +++|++.. .+||||+.+|+++ |++.|||||+
T Consensus 463 ~~vl~~l~~~~-~~~G~d~~~g~~~d~~~~GIiDp~ 497 (541)
T PRK12851 463 SVVVGKLREKP-GGYGFNAATNEYGDLYAQGVIDPV 497 (541)
T ss_pred HHHHHHHHhhC-CCeeeeCCCCCccchhhccCEecH
Confidence 99 99998764 4799999999999 9999999994
No 7
>PRK12850 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=2.6e-36 Score=269.84 Aligned_cols=161 Identities=35% Similarity=0.549 Sum_probs=144.0
Q ss_pred CCCCCCCCCCcCCceeeeEEEEeecceEEEecccccee-----------ecc-----------cc---------eEEEcC
Q 039968 3 TLWCKIPDFDLEHIMSRFWVIVSKNETIVLGRCLSMQE-----------IEE-----------ER---------SGQVGG 51 (165)
Q Consensus 3 ~~~~~l~~~~~~~LG~a~~v~v~~~~~~~i~~~~~~~~-----------~~~-----------er---------tI~vrG 51 (165)
+.|++++++++++||+|++|++++++|+++++|...+. +++ +| ||+|||
T Consensus 304 ~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~irG 383 (544)
T PRK12850 304 DLGIKLENVTLDMLGRAKRVLITKENTTIIDGAGDKKNIEARVKQIRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGG 383 (544)
T ss_pred ccCCCcccCCHHHcCCCcEEEEEeeeEEEEeCCCCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 45778999999999999999999999999986665431 000 12 699999
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhcCcccCCcchHHHHHHHHHHHHhccChhHHHHHHHHHHHHhHHHHHHHHhcCCCh
Q 039968 52 SSKADVRKKKKIVTNALNAAKAAMEEGILPGGGGISLLHASKELDELEITNSSQKIGVQIIQNALKMPVHAIASSAGVAG 131 (165)
Q Consensus 52 ~t~~~l~E~~~~i~Dal~~~~~al~~gvVpGG~G~~e~~~~~~L~~~~~~~~~~~~g~~~~~~AL~~~~~~la~NaG~d~ 131 (165)
+|+++++|++|+++||+|++|+++++|||||| |++|++++..|+++...++++|+|+++|++||+.||++||+|||+|+
T Consensus 384 ~t~~~l~E~er~i~DAl~~~k~a~~~g~VpGG-Ga~e~~~s~~L~~~~~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~ 462 (544)
T PRK12850 384 ATEVEVKEKKDRVDDALHATRAAVEEGIVPGG-GVALLRARSALRGLKGANADETAGIDIVRRALEEPLRQIATNAGFEG 462 (544)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhcCCccCC-cHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 99999999999999999999999999999999 99999999999998434889999999999999999999999999999
Q ss_pred HH-HHHHHhcCCCceeEeecCCcee-eccCccccCC
Q 039968 132 SF-VGKLLAQENHDLACDATTERLV-LKELRISDRA 165 (165)
Q Consensus 132 ~~-v~~l~~~~~~~~G~d~~~~~~~-~~~~gI~dp~ 165 (165)
.+ +++|++.. .++|||+.+|++. |++.|||||.
T Consensus 463 ~~v~~~l~~~~-~~~G~d~~~g~~~d~~~~gI~Dp~ 497 (544)
T PRK12850 463 SVVVGKVAELP-GNFGFNAQTGEYGDMVEAGIIDPA 497 (544)
T ss_pred HHHHHHHHhhC-CCcceeCCCCcccchhhccCcccH
Confidence 99 99998753 5799999999999 9999999994
No 8
>TIGR02348 GroEL chaperonin GroL. This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.
Probab=100.00 E-value=3.7e-36 Score=267.83 Aligned_cols=161 Identities=34% Similarity=0.511 Sum_probs=142.9
Q ss_pred CCCCCCCCCCcCCceeeeEEEEeecceEEEeccccceee-----------cc-----------cc---------eEEEcC
Q 039968 3 TLWCKIPDFDLEHIMSRFWVIVSKNETIVLGRCLSMQEI-----------EE-----------ER---------SGQVGG 51 (165)
Q Consensus 3 ~~~~~l~~~~~~~LG~a~~v~v~~~~~~~i~~~~~~~~~-----------~~-----------er---------tI~vrG 51 (165)
+.|++++++++++||+|++|++++++|++++.+...+.+ ++ || ||+|||
T Consensus 302 ~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~~~~~~~~~~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~irG 381 (524)
T TIGR02348 302 ELGLKLEEVTLDDLGKAKKVTVDKDNTTIVEGAGDKAAIKARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIKVGA 381 (524)
T ss_pred cccCCcCcCCHHHCCCceEEEEeecEEEEEcCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 567789999999999999999999999999865443311 00 22 599999
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhcCcccCCcchHHHHHHHHHHHHhccChhHHHHHHHHHHHHhHHHHHHHHhcCCCh
Q 039968 52 SSKADVRKKKKIVTNALNAAKAAMEEGILPGGGGISLLHASKELDELEITNSSQKIGVQIIQNALKMPVHAIASSAGVAG 131 (165)
Q Consensus 52 ~t~~~l~E~~~~i~Dal~~~~~al~~gvVpGG~G~~e~~~~~~L~~~~~~~~~~~~g~~~~~~AL~~~~~~la~NaG~d~ 131 (165)
+|+++++|++|+++||+|++|+++++|||||| |++|++++..|++....++++|+|+++|++||+.||++||+|||+|+
T Consensus 382 ~t~~~l~E~er~i~Dal~~~r~a~~~g~VpGG-Ga~e~~~s~~L~~~~~~~~~~~~~~~~~a~AL~~ip~~La~NaG~d~ 460 (524)
T TIGR02348 382 ATETEMKEKKLRVEDALNATRAAVEEGIVPGG-GVALLRAAAALEGLKGDNEDEAIGIDIVKRALEAPLRQIAENAGKDG 460 (524)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhcCCccCC-cHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 99999999999999999999999999999999 99999999999984333889999999999999999999999999999
Q ss_pred HH-HHHHHhcCCCceeEeecCCcee-eccCccccCC
Q 039968 132 SF-VGKLLAQENHDLACDATTERLV-LKELRISDRA 165 (165)
Q Consensus 132 ~~-v~~l~~~~~~~~G~d~~~~~~~-~~~~gI~dp~ 165 (165)
.+ +++|++. +.++|||+.+|++. |++.|||||+
T Consensus 461 ~~v~~~l~~~-~~~~G~d~~~g~~~d~~~~gI~Dp~ 495 (524)
T TIGR02348 461 AVVAEKVKES-KGNFGFNAATGEYEDLVEAGIIDPT 495 (524)
T ss_pred HHHHHHHHhc-CCCeeEeCcCCcccchhhccCEEcH
Confidence 99 9999876 34599999999999 9999999995
No 9
>PTZ00114 Heat shock protein 60; Provisional
Probab=100.00 E-value=4.4e-36 Score=268.92 Aligned_cols=161 Identities=43% Similarity=0.624 Sum_probs=142.1
Q ss_pred CCCCCCCCCcCCceeeeEEEEeecceEEEeccc----------ccee-ecc-----------cc---------eEEEcCC
Q 039968 4 LWCKIPDFDLEHIMSRFWVIVSKNETIVLGRCL----------SMQE-IEE-----------ER---------SGQVGGS 52 (165)
Q Consensus 4 ~~~~l~~~~~~~LG~a~~v~v~~~~~~~i~~~~----------~~~~-~~~-----------er---------tI~vrG~ 52 (165)
.+..++++++++||+|++|+++++++++++.+. .++. ++. +| ||+|||+
T Consensus 317 ~~~~l~~~~~~~LG~a~~v~~~~~~~~~~~~~~~~~~i~~r~~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~i~G~ 396 (555)
T PTZ00114 317 VGLKLDDFDPSMLGSAKKVTVTKDETVILTGGGDKAEIKERVELLRSQIERTTSEYDKEKLKERLAKLSGGVAVIKVGGA 396 (555)
T ss_pred cccCcccCCHHHcCCCceEEEEeceEEEEeCCCcHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCeEEEEecCC
Confidence 467788999999999999999999898886443 1111 000 11 7999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcCcccCCcchHHHHHHHHHHHHhc--c-ChhHHHHHHHHHHHHhHHHHHHHHhcCC
Q 039968 53 SKADVRKKKKIVTNALNAAKAAMEEGILPGGGGISLLHASKELDELEI--T-NSSQKIGVQIIQNALKMPVHAIASSAGV 129 (165)
Q Consensus 53 t~~~l~E~~~~i~Dal~~~~~al~~gvVpGG~G~~e~~~~~~L~~~~~--~-~~~~~~g~~~~~~AL~~~~~~la~NaG~ 129 (165)
|+++++|++|+++||+|++|+++++|||||| |++|++++..|+++.. . ++++|+|+++|++||+.||++||+|||+
T Consensus 397 t~~~l~E~~r~i~Dal~~~k~a~~~gvVpGG-Ga~e~~~s~~L~~~~~~~~~~~~~~~~i~~~a~AL~~ip~~La~NaG~ 475 (555)
T PTZ00114 397 SEVEVNEKKDRIEDALNATRAAVEEGIVPGG-GVALLRASKLLDKLEEDNELTPDQRTGVKIVRNALRLPTKQIAENAGV 475 (555)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcCcccCC-cHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999 9999999999998864 3 7899999999999999999999999999
Q ss_pred ChHH-HHHHHhcCCCceeEeecCCcee-eccCccccCC
Q 039968 130 AGSF-VGKLLAQENHDLACDATTERLV-LKELRISDRA 165 (165)
Q Consensus 130 d~~~-v~~l~~~~~~~~G~d~~~~~~~-~~~~gI~dp~ 165 (165)
|+.+ +++|++.+++++|||+.+|++. |++.|||||+
T Consensus 476 d~~~v~~~l~~~~~~~~G~d~~~g~~~d~~~~GI~Dp~ 513 (555)
T PTZ00114 476 EGAVVVEKILEKKDPSFGYDAQTGEYVNMFEAGIIDPT 513 (555)
T ss_pred CHHHHHHHHHhcCCCCEeEeCCCCcEeeHHhCCCEeCH
Confidence 9999 9999775567899999999999 9999999995
No 10
>PRK14104 chaperonin GroEL; Provisional
Probab=100.00 E-value=5.3e-36 Score=267.89 Aligned_cols=162 Identities=36% Similarity=0.554 Sum_probs=145.2
Q ss_pred CCCCCCCCCCcCCceeeeEEEEeecceEEEeccccc----------ee-ecc-----------cc---------eEEEcC
Q 039968 3 TLWCKIPDFDLEHIMSRFWVIVSKNETIVLGRCLSM----------QE-IEE-----------ER---------SGQVGG 51 (165)
Q Consensus 3 ~~~~~l~~~~~~~LG~a~~v~v~~~~~~~i~~~~~~----------~~-~~~-----------er---------tI~vrG 51 (165)
+.+.+++++++++||+|++|++++++|+++.+|... +. +++ || ||+|||
T Consensus 304 ~~~~~l~~~~~~~LG~a~~v~~~~~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eRi~~l~~~~atI~irG 383 (546)
T PRK14104 304 DLGIKLENVTLQMLGRAKKVMIDKENTTIVNGAGKKADIEARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGG 383 (546)
T ss_pred CCCCCcCcCCHHHCCceeEEEEcCCEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 467789999999999999999999999999866543 11 111 22 699999
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhcCcccCCcchHHHHHHHHHHHHhccChhHHHHHHHHHHHHhHHHHHHHHhcCCCh
Q 039968 52 SSKADVRKKKKIVTNALNAAKAAMEEGILPGGGGISLLHASKELDELEITNSSQKIGVQIIQNALKMPVHAIASSAGVAG 131 (165)
Q Consensus 52 ~t~~~l~E~~~~i~Dal~~~~~al~~gvVpGG~G~~e~~~~~~L~~~~~~~~~~~~g~~~~~~AL~~~~~~la~NaG~d~ 131 (165)
+|+++++|++|+++||+|++++++++|||||| |++|++++..|+++...++++|+|+++|++||+.||++||+|||+|+
T Consensus 384 ~t~~~l~e~~r~i~Dal~a~~~ai~~g~VpGG-Ga~e~~~s~~L~~~~~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~ 462 (546)
T PRK14104 384 ATEVEVKERKDRVDDAMHATRAAVEEGIVPGG-GVALLRASEQLKGIKTKNDDQKTGVEIVRKALSAPARQIAINAGEDG 462 (546)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHcCcCcCc-hHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhhHHHHHHhCCCCH
Confidence 99999999999999999999999999999999 99999999999988545889999999999999999999999999999
Q ss_pred HH-HHHHHhcCCCceeEeecCCcee-eccCccccCC
Q 039968 132 SF-VGKLLAQENHDLACDATTERLV-LKELRISDRA 165 (165)
Q Consensus 132 ~~-v~~l~~~~~~~~G~d~~~~~~~-~~~~gI~dp~ 165 (165)
.+ +.+|++.+++++|||+.++++. |++.|||||+
T Consensus 463 ~~v~~~l~~~~~~~~G~d~~~g~~~d~~~~GI~Dp~ 498 (546)
T PRK14104 463 SVIVGKILEKEQYSYGFDSQTGEYGNLVSKGIIDPT 498 (546)
T ss_pred HHHHHHHHhcCCCcEeEeCCCCceeehHhcCCEEcH
Confidence 99 9999875567899999999999 9999999994
No 11
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=8.3e-36 Score=263.31 Aligned_cols=154 Identities=19% Similarity=0.229 Sum_probs=141.5
Q ss_pred CCCCCCcCCceeeeEEE---EeecceEEEeccccceeecccceEEEcCCcHHHHHHHHHHHHHHHHHHHHHHhcC-cccC
Q 039968 7 KIPDFDLEHIMSRFWVI---VSKNETIVLGRCLSMQEIEEERSGQVGGSSKADVRKKKKIVTNALNAAKAAMEEG-ILPG 82 (165)
Q Consensus 7 ~l~~~~~~~LG~a~~v~---v~~~~~~~i~~~~~~~~~~~ertI~vrG~t~~~l~E~~~~i~Dal~~~~~al~~g-vVpG 82 (165)
+++++++++||+|+.|+ ++.++|++++.|...+.+ ||+|||+|+.+++|+||+++||+|++++++++| +|||
T Consensus 293 ~l~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~~~~----tI~lrg~t~~~l~E~er~l~DAl~~vk~~~~~~~~vpG 368 (484)
T cd03342 293 SVDDLSPECLGYAGLVYERTLGEEKYTFIEGVKNPKSC----TILIKGPNDHTITQIKDAIRDGLRAVKNAIEDKCVVPG 368 (484)
T ss_pred ccccCChhhCcccceEEEEEECCeEEEEEECCCCCcEE----EEEEeCCCHHHHHHHHHHHHHHHHHHHHHhcCCcEEeC
Confidence 57889999999999994 456788999888766557 999999999999999999999999999999999 9999
Q ss_pred CcchHHHHHHHHHHHHhcc-ChhHHHHHHHHHHHHhHHHHHHHHhcCCChHH-HHHHHhc---CCCceeEeecCCcee-e
Q 039968 83 GGGISLLHASKELDELEIT-NSSQKIGVQIIQNALKMPVHAIASSAGVAGSF-VGKLLAQ---ENHDLACDATTERLV-L 156 (165)
Q Consensus 83 G~G~~e~~~~~~L~~~~~~-~~~~~~g~~~~~~AL~~~~~~la~NaG~d~~~-v~~l~~~---~~~~~G~d~~~~~~~-~ 156 (165)
| |++|++++..|++++.. ++++|+++++|++||+.||++||+|||+|+.+ +.+|++. ++.++|+|+.+|++. |
T Consensus 369 G-Ga~e~~ls~~L~~~~~~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~~~d~ 447 (484)
T cd03342 369 A-GAFEVALYAHLKEFKKSVKGKAKLGVQAFADALLVIPKTLAENSGLDVQETLVKLQDEYAEGGQVGGVDLDTGEPMDP 447 (484)
T ss_pred C-CHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCceeeeCCCCcccch
Confidence 9 99999999999998765 88999999999999999999999999999999 9999753 456799999999999 9
Q ss_pred ccCccccCC
Q 039968 157 KELRISDRA 165 (165)
Q Consensus 157 ~~~gI~dp~ 165 (165)
++.|||||.
T Consensus 448 ~~~gI~dp~ 456 (484)
T cd03342 448 ESEGIWDNY 456 (484)
T ss_pred hhcCcEEcH
Confidence 999999995
No 12
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2.4e-35 Score=262.98 Aligned_cols=154 Identities=20% Similarity=0.245 Sum_probs=141.5
Q ss_pred CCCCCCcCCceeeeEE---EEeecceEEEeccccceeecccceEEEcCCcHHHHHHHHHHHHHHHHHHHHHHhcC-cccC
Q 039968 7 KIPDFDLEHIMSRFWV---IVSKNETIVLGRCLSMQEIEEERSGQVGGSSKADVRKKKKIVTNALNAAKAAMEEG-ILPG 82 (165)
Q Consensus 7 ~l~~~~~~~LG~a~~v---~v~~~~~~~i~~~~~~~~~~~ertI~vrG~t~~~l~E~~~~i~Dal~~~~~al~~g-vVpG 82 (165)
+++++++++||+|+.| ++++++|++|..|...+.+ ||+|||+|+.+++|++|+++||+|++++++++| +|||
T Consensus 336 ~l~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~~~~----TI~lrG~t~~~l~E~er~l~DAl~v~~~~~~~~~vvpG 411 (531)
T TIGR02347 336 SVEDLTPECLGWAGLVYETSIGEEKYTFIEEVKNPKSC----TILIKGPNDHTIKQIKDAVRDGLRAVKNAIEDKCVVPG 411 (531)
T ss_pred ccccCCccccccceEEEEEEECCeEEEEEEcCCCCCeE----EEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhCCcEEeC
Confidence 5788999999999999 5567788999888766657 999999999999999999999999999999999 9999
Q ss_pred CcchHHHHHHHHHHHHhcc-ChhHHHHHHHHHHHHhHHHHHHHHhcCCChHH-HHHHHhc---CCCceeEeecCCcee-e
Q 039968 83 GGGISLLHASKELDELEIT-NSSQKIGVQIIQNALKMPVHAIASSAGVAGSF-VGKLLAQ---ENHDLACDATTERLV-L 156 (165)
Q Consensus 83 G~G~~e~~~~~~L~~~~~~-~~~~~~g~~~~~~AL~~~~~~la~NaG~d~~~-v~~l~~~---~~~~~G~d~~~~~~~-~ 156 (165)
| |++|++++..|++++.. ++++|+++++|++||+.||++||+|||+|+.+ +.+|++. ++.++|+|+.+|++. |
T Consensus 412 G-Ga~E~~ls~~l~~~~~~~~~~~~~~i~~fa~ALe~ip~~La~NaG~d~~~vl~~l~~~~~~~~~~~Gid~~~g~~~d~ 490 (531)
T TIGR02347 412 A-GAFEIAAYCHLKEEKKSVKGKAKLGVEAFANALLVIPKTLAENSGLDAQDTLVKLEDEHDEGGEVVGVDLETGEPIDP 490 (531)
T ss_pred C-CHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccCCceeeeccCCCccch
Confidence 9 99999999999998665 88999999999999999999999999999999 9999763 345799999999999 9
Q ss_pred ccCccccCC
Q 039968 157 KELRISDRA 165 (165)
Q Consensus 157 ~~~gI~dp~ 165 (165)
++.|||||+
T Consensus 491 ~~~gV~Dp~ 499 (531)
T TIGR02347 491 EIKGIWDNY 499 (531)
T ss_pred hhccCEEcH
Confidence 999999995
No 13
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=100.00 E-value=2.3e-35 Score=263.11 Aligned_cols=154 Identities=18% Similarity=0.255 Sum_probs=141.2
Q ss_pred CCCCCCcCCceeeeEEE---EeecceEEEeccccceeecccceEEEcCCcHHHHHHHHHHHHHHHHHHHHHHhcC-cccC
Q 039968 7 KIPDFDLEHIMSRFWVI---VSKNETIVLGRCLSMQEIEEERSGQVGGSSKADVRKKKKIVTNALNAAKAAMEEG-ILPG 82 (165)
Q Consensus 7 ~l~~~~~~~LG~a~~v~---v~~~~~~~i~~~~~~~~~~~ertI~vrG~t~~~l~E~~~~i~Dal~~~~~al~~g-vVpG 82 (165)
+++++++++||+|+.|+ +.+++|+++.+|...+.+ ||+|||+|+.+++|+||+++||||++|+++++| +|||
T Consensus 336 ~l~~~~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~----TI~lrG~t~~~l~E~er~i~DAl~vv~~~i~~~~vVpG 411 (533)
T PTZ00212 336 TFDTPEKVKLGHCDLIEEIMIGEDKLIRFSGCAKGEAC----TIVLRGASTHILDEAERSLHDALCVLSQTVKDTRVVLG 411 (533)
T ss_pred cCCCCCHHHccCCceEEEEEECCeEEEEEEccCCCCEE----EEEEECCChhHHHHHHHHHHHHHHHHHHHhhCCCEeeC
Confidence 57888999999999998 456788999888765557 999999999999999999999999999999998 9999
Q ss_pred CcchHHHHHHHHHHHHhcc-ChhHHHHHHHHHHHHhHHHHHHHHhcCCChHH-HHHHHh---cCCCceeEeecCCcee-e
Q 039968 83 GGGISLLHASKELDELEIT-NSSQKIGVQIIQNALKMPVHAIASSAGVAGSF-VGKLLA---QENHDLACDATTERLV-L 156 (165)
Q Consensus 83 G~G~~e~~~~~~L~~~~~~-~~~~~~g~~~~~~AL~~~~~~la~NaG~d~~~-v~~l~~---~~~~~~G~d~~~~~~~-~ 156 (165)
| |++|++++..|++++.. ++++|+++++|++||+.||++||+|||+|+.+ +.+|+. +++.++|+|+.+|++. |
T Consensus 412 G-Ga~e~~ls~~L~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~vl~~l~~~h~~~~~~~G~d~~~g~i~d~ 490 (533)
T PTZ00212 412 G-GCSEMLMANAVEELAKKVEGKKSLAIEAFAKALRQIPTIIADNGGYDSAELVSKLRAEHYKGNKTAGIDMEKGTVGDM 490 (533)
T ss_pred C-CHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCccceeccCCcccch
Confidence 9 99999999999998765 88999999999999999999999999999999 999975 3456799999999999 9
Q ss_pred ccCccccCC
Q 039968 157 KELRISDRA 165 (165)
Q Consensus 157 ~~~gI~dp~ 165 (165)
++.|||||+
T Consensus 491 ~~~gI~dp~ 499 (533)
T PTZ00212 491 KELGITESY 499 (533)
T ss_pred hhccceecH
Confidence 999999995
No 14
>cd03343 cpn60 cpn60 chaperonin family. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=8.5e-35 Score=258.30 Aligned_cols=154 Identities=20% Similarity=0.304 Sum_probs=141.6
Q ss_pred CCCCCCcCCceeeeEEEEe---ecceEEEeccccceeecccceEEEcCCcHHHHHHHHHHHHHHHHHHHHHHhcC-cccC
Q 039968 7 KIPDFDLEHIMSRFWVIVS---KNETIVLGRCLSMQEIEEERSGQVGGSSKADVRKKKKIVTNALNAAKAAMEEG-ILPG 82 (165)
Q Consensus 7 ~l~~~~~~~LG~a~~v~v~---~~~~~~i~~~~~~~~~~~ertI~vrG~t~~~l~E~~~~i~Dal~~~~~al~~g-vVpG 82 (165)
+++++++++||+|+.|++. +++|+++++|...+.+ ||+|||+|+.+++|++|+++||||++|+++++| ||||
T Consensus 327 ~~~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~----TI~lrG~t~~~l~e~~~~l~Dal~~~~~~~~~~~vvpG 402 (517)
T cd03343 327 NIDDLTPEDLGEAELVEERKVGDDKMVFVEGCKNPKAV----TILLRGGTEHVVDELERALEDALRVVADALEDGKVVAG 402 (517)
T ss_pred chhhCChhhCCccceEEEEEECCeEEEEEEcCCCCceE----EEEEECCcHHHHHHHHHHHHHHHHHHHHHHhCCCeeeC
Confidence 4678889999999999987 6688888888776657 999999999999999999999999999999999 9999
Q ss_pred CcchHHHHHHHHHHHHhcc-ChhHHHHHHHHHHHHhHHHHHHHHhcCCChHH-HHHHHhc---CCCceeEeecCCcee-e
Q 039968 83 GGGISLLHASKELDELEIT-NSSQKIGVQIIQNALKMPVHAIASSAGVAGSF-VGKLLAQ---ENHDLACDATTERLV-L 156 (165)
Q Consensus 83 G~G~~e~~~~~~L~~~~~~-~~~~~~g~~~~~~AL~~~~~~la~NaG~d~~~-v~~l~~~---~~~~~G~d~~~~~~~-~ 156 (165)
| |++|++++..|+++... ++++|+++++|++||+.||++|++|||+|+.+ +.+|++. ++.++|+|+.+|++. |
T Consensus 403 G-G~~e~~ls~~L~~~~~~~~~~~~~~~~~~~~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~G~d~~~g~~~d~ 481 (517)
T cd03343 403 G-GAVEIELAKRLREYARSVGGREQLAVEAFADALEEIPRTLAENAGLDPIDTLVELRAAHEKGNKNAGLDVYTGEVVDM 481 (517)
T ss_pred C-CHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCceeeecCCCCccch
Confidence 9 99999999999998665 88999999999999999999999999999999 9999752 456799999999999 9
Q ss_pred ccCccccCC
Q 039968 157 KELRISDRA 165 (165)
Q Consensus 157 ~~~gI~dp~ 165 (165)
++.|||||.
T Consensus 482 ~~~gI~dp~ 490 (517)
T cd03343 482 LEKGVIEPL 490 (517)
T ss_pred hhcCceecH
Confidence 999999994
No 15
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.7e-34 Score=256.73 Aligned_cols=154 Identities=18% Similarity=0.236 Sum_probs=140.4
Q ss_pred CCCCCCcCCceeeeEEEEe---ecceEEEeccccceeecccceEEEcCCcHHHHHHHHHHHHHHHHHHHHHHhcC-cccC
Q 039968 7 KIPDFDLEHIMSRFWVIVS---KNETIVLGRCLSMQEIEEERSGQVGGSSKADVRKKKKIVTNALNAAKAAMEEG-ILPG 82 (165)
Q Consensus 7 ~l~~~~~~~LG~a~~v~v~---~~~~~~i~~~~~~~~~~~ertI~vrG~t~~~l~E~~~~i~Dal~~~~~al~~g-vVpG 82 (165)
+++++++++||+|+.|+.. .++++++.+|+..+.+ ||+|||+|+.+++|.+|+++||+|++++++++| +|||
T Consensus 324 ~l~~~~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~----TI~lrG~t~~~l~E~er~i~Dal~~~~~~i~~~~vvpG 399 (517)
T cd03336 324 TFDHPELVKLGTCKLIEEIMIGEDKLIRFSGVAAGEAC----TIVLRGASQQILDEAERSLHDALCVLAQTVKDTRVVLG 399 (517)
T ss_pred ccCCCCcccccccceEEEEEECCeEEEEEEccCCCceE----EEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeC
Confidence 5788899999999999864 4578888887765546 999999999999999999999999999999998 9999
Q ss_pred CcchHHHHHHHHHHHHhcc-ChhHHHHHHHHHHHHhHHHHHHHHhcCCChHH-HHHHHhc---CCCceeEeecCCcee-e
Q 039968 83 GGGISLLHASKELDELEIT-NSSQKIGVQIIQNALKMPVHAIASSAGVAGSF-VGKLLAQ---ENHDLACDATTERLV-L 156 (165)
Q Consensus 83 G~G~~e~~~~~~L~~~~~~-~~~~~~g~~~~~~AL~~~~~~la~NaG~d~~~-v~~l~~~---~~~~~G~d~~~~~~~-~ 156 (165)
| |++|++++..|++++.. ++++|+++++|++||+.||++||+|||+|+.+ +.+|+.. ++.++|+|+.+|++. |
T Consensus 400 G-Ga~e~~ls~~l~~~~~~~~~~~~~~i~~~a~ALe~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~~~d~ 478 (517)
T cd03336 400 G-GCSEMLMAKAVEELAKKTPGKKSLAIEAFAKALRQLPTIIADNAGYDSAELVAQLRAAHYNGNTTAGLDMRKGTVGDM 478 (517)
T ss_pred C-CHHHHHHHHHHHHHhhhCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCceeeecCCCCccch
Confidence 9 99999999999998765 88999999999999999999999999999999 9999763 466799999999999 9
Q ss_pred ccCccccCC
Q 039968 157 KELRISDRA 165 (165)
Q Consensus 157 ~~~gI~dp~ 165 (165)
++.|||||+
T Consensus 479 ~~~gI~dp~ 487 (517)
T cd03336 479 KELGITESF 487 (517)
T ss_pred hhcCceecH
Confidence 999999994
No 16
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.5e-34 Score=254.53 Aligned_cols=154 Identities=18% Similarity=0.244 Sum_probs=139.9
Q ss_pred CCCCCCcCCceeeeEEEEee---cceEEEecccc-ceeecccceEEEcCCcHHHHHHHHHHHHHHHHHHHHHHhcC-ccc
Q 039968 7 KIPDFDLEHIMSRFWVIVSK---NETIVLGRCLS-MQEIEEERSGQVGGSSKADVRKKKKIVTNALNAAKAAMEEG-ILP 81 (165)
Q Consensus 7 ~l~~~~~~~LG~a~~v~v~~---~~~~~i~~~~~-~~~~~~ertI~vrG~t~~~l~E~~~~i~Dal~~~~~al~~g-vVp 81 (165)
+++++++++||+|+.|++.+ ++++++..+.. .+.+ ||+|||+|+++++|+||+++||+|++|+++++| +||
T Consensus 279 ~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~----TI~lrG~t~~~l~E~er~i~DAl~~~~~ai~~~~vVp 354 (472)
T cd03341 279 RLGAPTPEEIGYCDSVYVEEIGDTKVVVFRQNKEDSKIA----TIVLRGATQNILDDVERAIDDGVNVFKSLTKDGRFVP 354 (472)
T ss_pred ccccCCHhHCCCceEEEEEEECCeeEEEEEccCCCCCeE----EEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEe
Confidence 35778899999999999876 78888887755 3336 899999999999999999999999999999999 999
Q ss_pred CCcchHHHHHHHHHHHHhcc-ChhHHHHHHHHHHHHhHHHHHHHHhcCCChHH-HHHHHh---cCCCceeEeecCC--ce
Q 039968 82 GGGGISLLHASKELDELEIT-NSSQKIGVQIIQNALKMPVHAIASSAGVAGSF-VGKLLA---QENHDLACDATTE--RL 154 (165)
Q Consensus 82 GG~G~~e~~~~~~L~~~~~~-~~~~~~g~~~~~~AL~~~~~~la~NaG~d~~~-v~~l~~---~~~~~~G~d~~~~--~~ 154 (165)
|| |++|++++..|+++... ++++++++++|++||+.||++|++|||+|+.+ +.+|+. +++.++|||+.+| ++
T Consensus 355 GG-G~~e~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~Gid~~~g~~~~ 433 (472)
T cd03341 355 GA-GATEIELAKKLKEYGEKTPGLEQYAIKKFAEAFEVVPRTLAENAGLDATEVLSELYAAHQKGNKSAGVDIESGDEGT 433 (472)
T ss_pred Cc-CHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCeeeeeccCCCCCc
Confidence 99 99999999999998665 78999999999999999999999999999999 999976 3456799999999 99
Q ss_pred e-eccCccccCC
Q 039968 155 V-LKELRISDRA 165 (165)
Q Consensus 155 ~-~~~~gI~dp~ 165 (165)
. |++.|||||+
T Consensus 434 ~d~~~~gI~dp~ 445 (472)
T cd03341 434 KDAKEAGIFDHL 445 (472)
T ss_pred cChhhccceecH
Confidence 9 9999999994
No 17
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal. Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.
Probab=100.00 E-value=1.8e-34 Score=256.49 Aligned_cols=154 Identities=17% Similarity=0.261 Sum_probs=141.5
Q ss_pred CCCCCCcCCceeeeEEEEee---cceEEEeccccceeecccceEEEcCCcHHHHHHHHHHHHHHHHHHHHHHhcC-cccC
Q 039968 7 KIPDFDLEHIMSRFWVIVSK---NETIVLGRCLSMQEIEEERSGQVGGSSKADVRKKKKIVTNALNAAKAAMEEG-ILPG 82 (165)
Q Consensus 7 ~l~~~~~~~LG~a~~v~v~~---~~~~~i~~~~~~~~~~~ertI~vrG~t~~~l~E~~~~i~Dal~~~~~al~~g-vVpG 82 (165)
+++++++++||+|+.|++++ ++|+++++|...+.+ ||+|||+|+.+++|.+|+++||+|++|+++++| +|||
T Consensus 330 ~~~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~----TI~lrG~t~~~l~E~~r~i~DAl~~~~~~~~~~~vvpG 405 (519)
T TIGR02339 330 SIKEITESDLGYAGLVEERKVGDDKMTFVEGCKNPKAV----TILLRGGTEHVVDELERSIQDALHVVASALEDGKVVAG 405 (519)
T ss_pred chhhCChhhccCCceEEEEEECCeEEEEEEcCCCCCEE----EEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEeeC
Confidence 46788889999999999876 788898888765557 999999999999999999999999999999999 9999
Q ss_pred CcchHHHHHHHHHHHHhcc-ChhHHHHHHHHHHHHhHHHHHHHHhcCCChHH-HHHHHhc---CCCceeEeecCCcee-e
Q 039968 83 GGGISLLHASKELDELEIT-NSSQKIGVQIIQNALKMPVHAIASSAGVAGSF-VGKLLAQ---ENHDLACDATTERLV-L 156 (165)
Q Consensus 83 G~G~~e~~~~~~L~~~~~~-~~~~~~g~~~~~~AL~~~~~~la~NaG~d~~~-v~~l~~~---~~~~~G~d~~~~~~~-~ 156 (165)
| |++|++++..|++++.. ++++++++++|++||+.||++||+|||+|+.+ +.+|++. ++.++|+|+.+|++. |
T Consensus 406 G-Ga~e~~ls~~l~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~~~d~ 484 (519)
T TIGR02339 406 G-GAVEIELALRLRSYARKIGGREQLAIEAFADALEEIPRILAENAGLDPIDALVELRAKHEKGNKNAGINVFTGEIEDM 484 (519)
T ss_pred C-CHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccCCceeEEcCCCCccch
Confidence 9 99999999999998665 88999999999999999999999999999999 9999752 456799999999999 9
Q ss_pred ccCccccCC
Q 039968 157 KELRISDRA 165 (165)
Q Consensus 157 ~~~gI~dp~ 165 (165)
++.|||||.
T Consensus 485 ~~~gI~dp~ 493 (519)
T TIGR02339 485 LELGVIEPL 493 (519)
T ss_pred hhccceEcH
Confidence 999999994
No 18
>PLN03167 Chaperonin-60 beta subunit; Provisional
Probab=100.00 E-value=8.4e-35 Score=262.40 Aligned_cols=162 Identities=35% Similarity=0.533 Sum_probs=141.4
Q ss_pred CCCCCCCCCCcCCceeeeEEEEeecceEEEe----------cccccee-ec-----------ccc--------e-EEEcC
Q 039968 3 TLWCKIPDFDLEHIMSRFWVIVSKNETIVLG----------RCLSMQE-IE-----------EER--------S-GQVGG 51 (165)
Q Consensus 3 ~~~~~l~~~~~~~LG~a~~v~v~~~~~~~i~----------~~~~~~~-~~-----------~er--------t-I~vrG 51 (165)
+.|++++++++++||+|++|++++++|++++ ++..++. .+ .+| + |+|||
T Consensus 358 ~~~~~l~~~~~~~LG~a~~v~~~~~~t~iig~~~~~~~i~~r~~~i~~~~~~~~~~~~~~~l~~Ri~~l~g~~aiI~vgG 437 (600)
T PLN03167 358 EVGLSLDKVGKEVLGTAAKVVLTKDTTTIVGDGSTQEAVNKRVAQIKNLIEAAEQDYEKEKLNERIAKLSGGVAVIQVGA 437 (600)
T ss_pred cccCCcccCCHHHCceeeEEEEecccceeeCCCccHHHHHHHHHHHHhhhhccCCHHHHHHHHHHHhhcCCcEEEEEecC
Confidence 5677899999999999999999999999886 3444433 10 022 4 55999
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhcCcccCCcchHHHHHHHHHHHHhcc-Chh-HHHHHHHHHHHHhHHHHHHHHhcCC
Q 039968 52 SSKADVRKKKKIVTNALNAAKAAMEEGILPGGGGISLLHASKELDELEIT-NSS-QKIGVQIIQNALKMPVHAIASSAGV 129 (165)
Q Consensus 52 ~t~~~l~E~~~~i~Dal~~~~~al~~gvVpGG~G~~e~~~~~~L~~~~~~-~~~-~~~g~~~~~~AL~~~~~~la~NaG~ 129 (165)
+|+++++|+||+++||||++|+|+++|||||| |++|++++..|+++... ++. +.+|++++++||+.||++||+|||+
T Consensus 438 ~t~~~l~E~er~i~DAl~avk~ai~~gvVpGG-Ga~el~ls~~L~~~~~~~~~~eq~~g~~~~~~Al~~p~r~La~NAG~ 516 (600)
T PLN03167 438 QTETELKEKKLRVEDALNATKAAVEEGIVVGG-GCTLLRLASKVDAIKDTLENDEQKVGADIVKRALSYPLKLIAKNAGV 516 (600)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhcCCCccH-HHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHhcchhhhhhcCCC
Confidence 99999999999999999999999999999999 99999999999998654 444 5567999999999999999999999
Q ss_pred ChHH-HHHHHhcCCCceeEeecCCcee-eccCccccCC
Q 039968 130 AGSF-VGKLLAQENHDLACDATTERLV-LKELRISDRA 165 (165)
Q Consensus 130 d~~~-v~~l~~~~~~~~G~d~~~~~~~-~~~~gI~dp~ 165 (165)
|+.+ +.+|+.+++.++|||+.++++. |++.|||||+
T Consensus 517 d~~~vv~~L~~~~~~~~G~d~~~g~~~dm~~~GI~Dp~ 554 (600)
T PLN03167 517 NGSVVSEKVLSNDNPKFGYNAATGKYEDLMAAGIIDPT 554 (600)
T ss_pred CHHHHHHHHHhcCCCCEeEeCCCCcCcchHhccCeecH
Confidence 9999 9999866677899999999999 9999999995
No 19
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.6e-34 Score=257.27 Aligned_cols=154 Identities=18% Similarity=0.271 Sum_probs=139.4
Q ss_pred CCCCCCcCCceeeeEEEEe-----ecceEEEeccccceeecccceEEEcCCcHHHHHHHHHHHHHHHHHHHHHHhcC-cc
Q 039968 7 KIPDFDLEHIMSRFWVIVS-----KNETIVLGRCLSMQEIEEERSGQVGGSSKADVRKKKKIVTNALNAAKAAMEEG-IL 80 (165)
Q Consensus 7 ~l~~~~~~~LG~a~~v~v~-----~~~~~~i~~~~~~~~~~~ertI~vrG~t~~~l~E~~~~i~Dal~~~~~al~~g-vV 80 (165)
+++++++++||+|+.|++. +++++|++.|...+.+ ||+|||+|+.+++|++|+++||||++++++++| +|
T Consensus 335 ~l~~l~~~~LG~~~~v~~~~ig~~~~~~~~i~g~~~~~~~----TIllrG~t~~~l~E~er~l~DAl~~~~~~~~~~~vv 410 (526)
T cd03339 335 RFEDLSPEKLGKAGLVREISFGTTKDKMLVIEGCPNSKAV----TIFIRGGNKMIIEEAKRSLHDALCVVRNLIRDNRIV 410 (526)
T ss_pred chhhCChhhcccCceEEEEEecCCCcEEEEEECCCCCCEE----EEEEECCCHHHHHHHHHHHHHHHHHHHHHhhCCCEE
Confidence 5788999999999999853 3567888888766657 999999999999999999999999999999998 99
Q ss_pred cCCcchHHHHHHHHHHHHhcc-ChhHHHHHHHHHHHHhHHHHHHHHhcCCChHH-HHHHHhc----CCCceeEeecCCce
Q 039968 81 PGGGGISLLHASKELDELEIT-NSSQKIGVQIIQNALKMPVHAIASSAGVAGSF-VGKLLAQ----ENHDLACDATTERL 154 (165)
Q Consensus 81 pGG~G~~e~~~~~~L~~~~~~-~~~~~~g~~~~~~AL~~~~~~la~NaG~d~~~-v~~l~~~----~~~~~G~d~~~~~~ 154 (165)
||| |++|++++..|+++... ++.+|+++++|++||+.||++|++|||+|+.+ +.+|+.. ++.++|+|+.+|++
T Consensus 411 pGG-Ga~e~~ls~~l~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~~ 489 (526)
T cd03339 411 YGG-GAAEISCSLAVEKAADKCSGIEQYAMRAFADALESIPLALAENSGLNPIETLSEVKARQVKEKNPHLGIDCLGRGT 489 (526)
T ss_pred eCC-CHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCCeEeeecCCCcc
Confidence 999 99999999999998665 88999999999999999999999999999999 9999742 34579999999999
Q ss_pred e-eccCccccCC
Q 039968 155 V-LKELRISDRA 165 (165)
Q Consensus 155 ~-~~~~gI~dp~ 165 (165)
. |++.|||||+
T Consensus 490 ~d~~~~gV~dp~ 501 (526)
T cd03339 490 NDMKEQKVFETL 501 (526)
T ss_pred CchhhcCceecH
Confidence 9 9999999995
No 20
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=3.8e-34 Score=254.63 Aligned_cols=154 Identities=18% Similarity=0.212 Sum_probs=139.6
Q ss_pred CCCCCCcCCceeeeEEEEe---ecceEEEeccccceeecccceEEEcCCcHHHHHHHHHHHHHHHHHHHHHHhcC-cccC
Q 039968 7 KIPDFDLEHIMSRFWVIVS---KNETIVLGRCLSMQEIEEERSGQVGGSSKADVRKKKKIVTNALNAAKAAMEEG-ILPG 82 (165)
Q Consensus 7 ~l~~~~~~~LG~a~~v~v~---~~~~~~i~~~~~~~~~~~ertI~vrG~t~~~l~E~~~~i~Dal~~~~~al~~g-vVpG 82 (165)
+++++++++||+|+.|++. .++++++.+|+..+.+ ||+|||+|+.+++|++|+++||+|++|++++++ +|||
T Consensus 325 ~~~~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~----TIllrG~t~~~l~E~er~i~Dal~~~~~~~~~~~vvpG 400 (519)
T TIGR02341 325 TFDHPELVKLGSCDLIEEIMIGEDKLLKFSGVKLGEAC----TIVLRGATQQILDESERSLHDALCVLSQTVKESRTVLG 400 (519)
T ss_pred ccccCCccccccCceEEEEEECCEEEEEEEcCCCCCEE----EEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeC
Confidence 5678889999999999764 3578888888765556 899999999999999999999999999999985 9999
Q ss_pred CcchHHHHHHHHHHHHhcc-ChhHHHHHHHHHHHHhHHHHHHHHhcCCChHH-HHHHHhc---CCCceeEeecCCcee-e
Q 039968 83 GGGISLLHASKELDELEIT-NSSQKIGVQIIQNALKMPVHAIASSAGVAGSF-VGKLLAQ---ENHDLACDATTERLV-L 156 (165)
Q Consensus 83 G~G~~e~~~~~~L~~~~~~-~~~~~~g~~~~~~AL~~~~~~la~NaG~d~~~-v~~l~~~---~~~~~G~d~~~~~~~-~ 156 (165)
| |++|++++..|+++... ++++|+++++|++||+.||++||+|||+|+.+ +.+|++. ++.++|+|+.+|++. |
T Consensus 401 G-Ga~e~~ls~~l~~~~~~~~~~~~~~i~~~a~Ale~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~i~d~ 479 (519)
T TIGR02341 401 G-GCSEMLMSKAVAVEAQKVPGKEALAVEAFARALRQLPTIIADNAGFDSAELVAQLRAAHYNGNHTMGLDMEEGEIADM 479 (519)
T ss_pred C-CHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCCccceecCCCcccch
Confidence 9 99999999999998665 88999999999999999999999999999999 9999773 456799999999999 9
Q ss_pred ccCccccCC
Q 039968 157 KELRISDRA 165 (165)
Q Consensus 157 ~~~gI~dp~ 165 (165)
++.|||||.
T Consensus 480 ~~~gI~dp~ 488 (519)
T TIGR02341 480 RKLGIIESY 488 (519)
T ss_pred hhccceEcH
Confidence 999999994
No 21
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.6e-34 Score=256.00 Aligned_cols=152 Identities=19% Similarity=0.207 Sum_probs=137.8
Q ss_pred CCCCcCCceeeeEEE---EeecceEEEeccccceeecccceEEEcCCcHHHHHHHHHHHHHHHHHHHHHHhcC-cccCCc
Q 039968 9 PDFDLEHIMSRFWVI---VSKNETIVLGRCLSMQEIEEERSGQVGGSSKADVRKKKKIVTNALNAAKAAMEEG-ILPGGG 84 (165)
Q Consensus 9 ~~~~~~~LG~a~~v~---v~~~~~~~i~~~~~~~~~~~ertI~vrG~t~~~l~E~~~~i~Dal~~~~~al~~g-vVpGG~ 84 (165)
+++++++||+|+.|+ ++.++|+++..|...+.+ ||+|||+|+++++|++|+++||+|++++++++| +||||
T Consensus 330 ~~~~~~~LG~~~~v~~~~ig~~~~~~i~g~~~~~~~----TIllrG~t~~~l~e~er~i~Dal~~~~~~~~~~~vvpGG- 404 (527)
T cd03335 330 ETFDPSYLGEAEEVVQERIGDDELILIKGTKKRSSA----SIILRGANDFMLDEMERSLHDALCVVKRTLESNSVVPGG- 404 (527)
T ss_pred cccCHhhCccCceEEEEEECCeEEEEEEcCCCCCEE----EEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEeeCC-
Confidence 456677999999998 456788998888765557 999999999999999999999999999999999 99999
Q ss_pred chHHHHHHHHHHHHhcc-ChhHHHHHHHHHHHHhHHHHHHHHhcCCChHH-HHHHHhc---C--------CCceeEeecC
Q 039968 85 GISLLHASKELDELEIT-NSSQKIGVQIIQNALKMPVHAIASSAGVAGSF-VGKLLAQ---E--------NHDLACDATT 151 (165)
Q Consensus 85 G~~e~~~~~~L~~~~~~-~~~~~~g~~~~~~AL~~~~~~la~NaG~d~~~-v~~l~~~---~--------~~~~G~d~~~ 151 (165)
|++|++++..|++++.. ++++|+++++|++||+.||++||+|||+|+.+ +.+|++. + +.++|+|+.+
T Consensus 405 Ga~e~~ls~~L~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~~~~~l~~~h~~~~~~~~~~~~~~~Gid~~~ 484 (527)
T cd03335 405 GAVETALSIYLENFATTLGSREQLAIAEFAEALLVIPKTLAVNAAKDATELVAKLRAYHAAAQVKPDKKHLKWYGLDLIN 484 (527)
T ss_pred CHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCccccccCceEeEECCC
Confidence 99999999999998665 88999999999999999999999999999999 9999763 2 3468999999
Q ss_pred Ccee-eccCccccCC
Q 039968 152 ERLV-LKELRISDRA 165 (165)
Q Consensus 152 ~~~~-~~~~gI~dp~ 165 (165)
|++. |++.|||||+
T Consensus 485 g~~~d~~~~gV~dp~ 499 (527)
T cd03335 485 GKVRDNLEAGVLEPT 499 (527)
T ss_pred CcccchhhccceecH
Confidence 9999 9999999995
No 22
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=3.5e-34 Score=254.97 Aligned_cols=154 Identities=20% Similarity=0.251 Sum_probs=139.7
Q ss_pred CCCCCCcCCcee-eeEEEEe---ecceEEEeccccceeecccceEEEcCCcHHHHHHHHHHHHHHHHHHHHHHhcC-ccc
Q 039968 7 KIPDFDLEHIMS-RFWVIVS---KNETIVLGRCLSMQEIEEERSGQVGGSSKADVRKKKKIVTNALNAAKAAMEEG-ILP 81 (165)
Q Consensus 7 ~l~~~~~~~LG~-a~~v~v~---~~~~~~i~~~~~~~~~~~ertI~vrG~t~~~l~E~~~~i~Dal~~~~~al~~g-vVp 81 (165)
+++++++++||+ |+.|++. .++|+++++|+..+.+ ||+|||+|+.+++|+||+++||+|+++++++++ +||
T Consensus 330 ~l~~l~~~~lG~~~~~v~~~~ig~~~~~~~~g~~~~~~~----TIlLrG~t~~~l~E~er~l~DAl~~vk~~~~~~~vvp 405 (525)
T TIGR02344 330 RPEELRESDVGTGCGLFEVKKIGDEYFTFFTECKDPKAC----TILLRGASKDVLNEIERNLQDAMAVARNVLLEPKLLP 405 (525)
T ss_pred chhhCCHhhcCCcCCEEEEEEECCeEEEEEEcCCCCCEE----EEEEEcCCHHHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 467888999999 9999884 3678888887766557 999999999999999999999999999999885 999
Q ss_pred CCcchHHHHHHHHHHHHhcc-ChhHHHHHHHHHHHHhHHHHHHHHhcCCChHH-HHHHHhc---C-CCceeEeecCCcee
Q 039968 82 GGGGISLLHASKELDELEIT-NSSQKIGVQIIQNALKMPVHAIASSAGVAGSF-VGKLLAQ---E-NHDLACDATTERLV 155 (165)
Q Consensus 82 GG~G~~e~~~~~~L~~~~~~-~~~~~~g~~~~~~AL~~~~~~la~NaG~d~~~-v~~l~~~---~-~~~~G~d~~~~~~~ 155 (165)
|| |++|++++..|++++.. ++++|+++++|++||+.||++||+|||+|+.+ +.+|+.. + +.++|+|+.+|++.
T Consensus 406 GG-Ga~e~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~~~ 484 (525)
T TIGR02344 406 GG-GATEMAVSVYLAKKASKLEGVQQWPYRAVADALEIIPRTLAQNCGVNVIRTLTELRAKHAQEGNCTWGIDGETGKIV 484 (525)
T ss_pred CC-CHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCCeEeEECCCCccc
Confidence 99 99999999999998665 88999999999999999999999999999999 9999763 2 46799999999999
Q ss_pred -eccCccccCC
Q 039968 156 -LKELRISDRA 165 (165)
Q Consensus 156 -~~~~gI~dp~ 165 (165)
|++.|||||.
T Consensus 485 d~~~~gV~dp~ 495 (525)
T TIGR02344 485 DMKEKGIWEPL 495 (525)
T ss_pred cchhccceecH
Confidence 9999999994
No 23
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=5.6e-34 Score=253.05 Aligned_cols=154 Identities=17% Similarity=0.226 Sum_probs=138.7
Q ss_pred CCCCCCcCCceeeeEEEEeec---ceEEEecccc-ceeecccceEEEcCCcHHHHHHHHHHHHHHHHHHHHHHhcC-ccc
Q 039968 7 KIPDFDLEHIMSRFWVIVSKN---ETIVLGRCLS-MQEIEEERSGQVGGSSKADVRKKKKIVTNALNAAKAAMEEG-ILP 81 (165)
Q Consensus 7 ~l~~~~~~~LG~a~~v~v~~~---~~~~i~~~~~-~~~~~~ertI~vrG~t~~~l~E~~~~i~Dal~~~~~al~~g-vVp 81 (165)
+++++++++||+|+.|++.+. +++++.+|+. .+.+ ||+|||+|+.+++|++|+++||+|++++++++| +||
T Consensus 325 sl~~l~~~~LG~~~~v~~~~~g~~~~~~i~~~~~~~~~~----TIllrG~t~~~l~e~~r~i~Dal~~~~~~~~~~~vvp 400 (515)
T cd03338 325 SIDHFTEDKLGSADLVEEVSLGDGKIVKITGVKNPGKTV----TILVRGSNKLVLDEAERSLHDALCVIRCLVKKRALIP 400 (515)
T ss_pred ccccCCHhhCCCCceEEEEEECCeEEEEEEecCCCCceE----EEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEEE
Confidence 467888999999999998653 5566666665 2336 899999999999999999999999999999999 999
Q ss_pred CCcchHHHHHHHHHHHHhcc-ChhHHHHHHHHHHHHhHHHHHHHHhcCCChHH-HHHHHhc---CCCceeEeecCCcee-
Q 039968 82 GGGGISLLHASKELDELEIT-NSSQKIGVQIIQNALKMPVHAIASSAGVAGSF-VGKLLAQ---ENHDLACDATTERLV- 155 (165)
Q Consensus 82 GG~G~~e~~~~~~L~~~~~~-~~~~~~g~~~~~~AL~~~~~~la~NaG~d~~~-v~~l~~~---~~~~~G~d~~~~~~~- 155 (165)
|| |++|++++..|+++... ++++|+++++|++||+.||++|++|||+|+.+ +.+|++. ++.++|+|+.+|++.
T Consensus 401 GG-G~~e~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~G~d~~~g~~~d 479 (515)
T cd03338 401 GG-GAPEIEIALQLSEWARTLTGVEQYCVRAFADALEVIPYTLAENAGLNPISIVTELRNRHAQGEKNAGINVRKGAITN 479 (515)
T ss_pred CC-CHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCccceeccCCCccc
Confidence 99 99999999999998665 88999999999999999999999999999999 9999763 456799999999999
Q ss_pred eccCccccCC
Q 039968 156 LKELRISDRA 165 (165)
Q Consensus 156 ~~~~gI~dp~ 165 (165)
|++.|||||.
T Consensus 480 ~~~~gI~dp~ 489 (515)
T cd03338 480 ILEENVVQPL 489 (515)
T ss_pred hhhcCceecH
Confidence 9999999995
No 24
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=5.6e-34 Score=254.34 Aligned_cols=152 Identities=20% Similarity=0.239 Sum_probs=137.5
Q ss_pred CCCCcCCceeeeEEE---EeecceEEEeccccceeecccceEEEcCCcHHHHHHHHHHHHHHHHHHHHHHhcC-cccCCc
Q 039968 9 PDFDLEHIMSRFWVI---VSKNETIVLGRCLSMQEIEEERSGQVGGSSKADVRKKKKIVTNALNAAKAAMEEG-ILPGGG 84 (165)
Q Consensus 9 ~~~~~~~LG~a~~v~---v~~~~~~~i~~~~~~~~~~~ertI~vrG~t~~~l~E~~~~i~Dal~~~~~al~~g-vVpGG~ 84 (165)
+++++++||+|+.|+ +++++|+++.++...+.+ ||+|||+|+.+++|++|+++||+|++|+++++| |||||
T Consensus 334 ~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~~~~----TIlirG~t~~~l~E~~r~i~DAl~~~~~~~~~~~vVpGG- 408 (536)
T TIGR02340 334 ETFDASYLGFADEVVEERIADDECILIKGTKGRKSA----SIILRGANDFMLDEMERSLHDALCVVKRTLESNSVVPGG- 408 (536)
T ss_pred ccccccccccCceEEEEEECCeEEEEEEcCCCCCEE----EEEEeCCcHHHHHHHHHHHHHHHHHHHHHhcCCCEEECC-
Confidence 456778899999999 557788999877765556 999999999999999999999999999999999 99999
Q ss_pred chHHHHHHHHHHHHhcc-ChhHHHHHHHHHHHHhHHHHHHHHhcCCChHH-HHHHHhc---C--------CCceeEeecC
Q 039968 85 GISLLHASKELDELEIT-NSSQKIGVQIIQNALKMPVHAIASSAGVAGSF-VGKLLAQ---E--------NHDLACDATT 151 (165)
Q Consensus 85 G~~e~~~~~~L~~~~~~-~~~~~~g~~~~~~AL~~~~~~la~NaG~d~~~-v~~l~~~---~--------~~~~G~d~~~ 151 (165)
|++|++++..|+++... ++++++++++|++||+.||++||+|||+|+.+ +.+|++. + +.++|||+.+
T Consensus 409 Ga~e~~ls~~l~~~~~~~~~~~~~~~~~fa~AL~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~~~~~~~~Gid~~~ 488 (536)
T TIGR02340 409 GAVETALSIYLENFATTLGSREQLAIAEFAEALLIIPKVLAVNAALDSTELVAKLRAYHAAAQLKPEKKHLKWYGLDLSN 488 (536)
T ss_pred CHHHHHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCcccccccCceEeEEccC
Confidence 99999999999988665 88999999999999999999999999999999 9999762 1 3469999999
Q ss_pred Ccee-eccCccccCC
Q 039968 152 ERLV-LKELRISDRA 165 (165)
Q Consensus 152 ~~~~-~~~~gI~dp~ 165 (165)
|++. |++.|||||+
T Consensus 489 g~~~d~~~~gI~Dp~ 503 (536)
T TIGR02340 489 GKIRDNKEAGVLEPA 503 (536)
T ss_pred CccccchhccceecH
Confidence 9999 9999999995
No 25
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=6.5e-34 Score=252.97 Aligned_cols=154 Identities=18% Similarity=0.262 Sum_probs=136.3
Q ss_pred CCCCCCcCCceeeeEEE-Eee--cceEEEeccccc-eeecccceEEEcCCcHHHHHHHHHHHHHHHHHHHHHHhc-Cccc
Q 039968 7 KIPDFDLEHIMSRFWVI-VSK--NETIVLGRCLSM-QEIEEERSGQVGGSSKADVRKKKKIVTNALNAAKAAMEE-GILP 81 (165)
Q Consensus 7 ~l~~~~~~~LG~a~~v~-v~~--~~~~~i~~~~~~-~~~~~ertI~vrG~t~~~l~E~~~~i~Dal~~~~~al~~-gvVp 81 (165)
+++++++++||+|+.|+ ++. +.++++..|+.. +.+ ||+|||+|+++++|++|+++||+|++++++++ ++||
T Consensus 326 ~~~~l~~~~LG~~~~v~~~~~~~~~~~~i~~~~~~~~~~----tIllrG~t~~~l~E~er~i~DAl~~v~~~~~~~~~Vp 401 (517)
T TIGR02342 326 SIDHFTADKLGSAELVEEVTTDGGKIIKITGIQNAGKTV----TVLLRGSNKLVIDEAERSLHDALCVIRSLVKKRGLIP 401 (517)
T ss_pred chhhcCcccCcCCceEEEEEECCeEEEEEEccCCCCceE----EEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEEE
Confidence 46788999999999998 443 344555566553 335 89999999999999999999999999999998 5999
Q ss_pred CCcchHHHHHHHHHHHHhcc-ChhHHHHHHHHHHHHhHHHHHHHHhcCCChHH-HHHHHhc---CCCceeEeecCCcee-
Q 039968 82 GGGGISLLHASKELDELEIT-NSSQKIGVQIIQNALKMPVHAIASSAGVAGSF-VGKLLAQ---ENHDLACDATTERLV- 155 (165)
Q Consensus 82 GG~G~~e~~~~~~L~~~~~~-~~~~~~g~~~~~~AL~~~~~~la~NaG~d~~~-v~~l~~~---~~~~~G~d~~~~~~~- 155 (165)
|| |++|++++..|++++.. ++.+|+++++|++||+.||++||+|||+|+.+ +.+|+.. ++.++|+|+.+|++.
T Consensus 402 GG-Ga~e~~ls~~l~~~~~~~~~~~~~~i~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~i~d 480 (517)
T TIGR02342 402 GG-GAPEIEIAIKLSKLARTMKGVESYCVRAFADALEVIPYTLAENAGLNPIDVVTELRNRHANGEKYAGISVRKGGITD 480 (517)
T ss_pred Cc-CHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCccceecCCCCccc
Confidence 99 99999999999998665 88999999999999999999999999999999 9999763 456799999999999
Q ss_pred eccCccccCC
Q 039968 156 LKELRISDRA 165 (165)
Q Consensus 156 ~~~~gI~dp~ 165 (165)
|++.|||||+
T Consensus 481 ~~~~gI~dp~ 490 (517)
T TIGR02342 481 MLEEEVLQPL 490 (517)
T ss_pred hhhccceEcH
Confidence 9999999995
No 26
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.1e-33 Score=251.88 Aligned_cols=154 Identities=16% Similarity=0.187 Sum_probs=139.7
Q ss_pred CCCCCCcCCceeeeEEEEe---ecceEEEeccccceeecccceEEEcCCcHHHHHHHHHHHHHHHHHHHHHHhc-CcccC
Q 039968 7 KIPDFDLEHIMSRFWVIVS---KNETIVLGRCLSMQEIEEERSGQVGGSSKADVRKKKKIVTNALNAAKAAMEE-GILPG 82 (165)
Q Consensus 7 ~l~~~~~~~LG~a~~v~v~---~~~~~~i~~~~~~~~~~~ertI~vrG~t~~~l~E~~~~i~Dal~~~~~al~~-gvVpG 82 (165)
+++++++++||+|+.|+.. .++++++.+++..+.+ ||+|||+|+++++|++|+++||+|++|+++++ ++|||
T Consensus 330 ~~~~l~~~~LG~~~~ie~~~~~~~r~~~~~g~~~~~~~----TI~lrG~t~~~l~E~~r~i~DAl~~~~~~~~~~~vvpG 405 (522)
T TIGR02345 330 TTSDLEADVLGTCALFEERQIGSERYNYFTGCPHAKTC----TIILRGGAEQFIEEAERSLHDAIMIVRRALKARKIVAG 405 (522)
T ss_pred chhhCChhhccCCceEEEEEECCeEEEEEEcCCCCceE----EEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeC
Confidence 5688999999999999875 3577888877665556 99999999999999999999999999999998 59999
Q ss_pred CcchHHHHHHHHHHHHhcc-ChhHHHHHHHHHHHHhHHHHHHHHhcCCChHH-HHHHHhc---CCCceeEeecCCcee-e
Q 039968 83 GGGISLLHASKELDELEIT-NSSQKIGVQIIQNALKMPVHAIASSAGVAGSF-VGKLLAQ---ENHDLACDATTERLV-L 156 (165)
Q Consensus 83 G~G~~e~~~~~~L~~~~~~-~~~~~~g~~~~~~AL~~~~~~la~NaG~d~~~-v~~l~~~---~~~~~G~d~~~~~~~-~ 156 (165)
| |++|++++..|++++.. ++++|+++++|++||+.||++||+|||+|+.+ +.+|++. ++.++|||+.+|++. |
T Consensus 406 G-G~~e~~ls~~l~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~vl~~l~~~h~~~~~~~G~d~~~~~i~d~ 484 (522)
T TIGR02345 406 G-GAIEMELSKILREHSKKIDGKQQLIIEAFAKALEIIPRSLCENAGFDSIEILNKLRSRHAKGGKWYGVDINTEDIGDN 484 (522)
T ss_pred C-CHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCCccceeCCCCcccch
Confidence 9 99999999999998665 88999999999999999999999999999999 9999873 455799999999999 9
Q ss_pred ccCccccCC
Q 039968 157 KELRISDRA 165 (165)
Q Consensus 157 ~~~gI~dp~ 165 (165)
++.|||||+
T Consensus 485 ~~~gI~dp~ 493 (522)
T TIGR02345 485 FENFVWEPL 493 (522)
T ss_pred hhcCceEcH
Confidence 999999995
No 27
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.1e-33 Score=252.44 Aligned_cols=154 Identities=16% Similarity=0.249 Sum_probs=138.9
Q ss_pred CCCCCCcCCceeeeEEEEee-----cceEEEeccccceeecccceEEEcCCcHHHHHHHHHHHHHHHHHHHHHHhcC-cc
Q 039968 7 KIPDFDLEHIMSRFWVIVSK-----NETIVLGRCLSMQEIEEERSGQVGGSSKADVRKKKKIVTNALNAAKAAMEEG-IL 80 (165)
Q Consensus 7 ~l~~~~~~~LG~a~~v~v~~-----~~~~~i~~~~~~~~~~~ertI~vrG~t~~~l~E~~~~i~Dal~~~~~al~~g-vV 80 (165)
+++++++++||+|++|++.+ ++++++..|...+.+ ||+|||+|+++++|+||+++||+++++++++++ +|
T Consensus 339 ~l~~~~~~~LG~a~~v~~~~ig~~~~~~~~i~~~~~~~~~----TIllrG~t~~~l~E~er~l~DAl~~v~~~i~~~~vv 414 (532)
T TIGR02343 339 RFEELSEDKLGKAGLVREISFGTTKDRMLVIEQCKNSKAV----TIFIRGGNKMIIEEAKRSIHDALCVVRNLIKNSRIV 414 (532)
T ss_pred ccccCCHhHCcccceEEEEEecCCcceEEEEECCCCCCEE----EEEEECCCHHHHHHHHHHHHHHHHHHHHHHhCCCEE
Confidence 57889999999999998542 467888888765556 999999999999999999999999999999985 99
Q ss_pred cCCcchHHHHHHHHHHHHhcc-ChhHHHHHHHHHHHHhHHHHHHHHhcCCChHH-HHHHHhc----CCCceeEeecCCce
Q 039968 81 PGGGGISLLHASKELDELEIT-NSSQKIGVQIIQNALKMPVHAIASSAGVAGSF-VGKLLAQ----ENHDLACDATTERL 154 (165)
Q Consensus 81 pGG~G~~e~~~~~~L~~~~~~-~~~~~~g~~~~~~AL~~~~~~la~NaG~d~~~-v~~l~~~----~~~~~G~d~~~~~~ 154 (165)
||| |++|+++++.|++++.. ++.+|+++++|++||+.||++||+|||+|+.+ +.+|++. +..++|+|+.+|++
T Consensus 415 pGG-Ga~e~~ls~~l~~~~~~~~~~~~~~i~~fa~ALe~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~i 493 (532)
T TIGR02343 415 YGG-GAAEISCSLAVSQEADKYSGVEQYAIRAFADALEEIPMALAENSGLDPIGTLSDLKSLQMKEKNPHLGVDCLGDGT 493 (532)
T ss_pred eCc-CHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCCccCeeCCCCcc
Confidence 999 99999999999998665 88899999999999999999999999999999 9999752 25579999999999
Q ss_pred e-eccCccccCC
Q 039968 155 V-LKELRISDRA 165 (165)
Q Consensus 155 ~-~~~~gI~dp~ 165 (165)
. |++.|||||+
T Consensus 494 ~d~~~~gV~Dp~ 505 (532)
T TIGR02343 494 NDMKEQGVFETL 505 (532)
T ss_pred ccchhccCeecH
Confidence 9 9999999995
No 28
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.9e-33 Score=250.03 Aligned_cols=154 Identities=14% Similarity=0.193 Sum_probs=140.4
Q ss_pred CCCCCCcCCceeeeEEEE---eecceEEEeccccceeecccceEEEcCCcHHHHHHHHHHHHHHHHHHHHHHhcC-cccC
Q 039968 7 KIPDFDLEHIMSRFWVIV---SKNETIVLGRCLSMQEIEEERSGQVGGSSKADVRKKKKIVTNALNAAKAAMEEG-ILPG 82 (165)
Q Consensus 7 ~l~~~~~~~LG~a~~v~v---~~~~~~~i~~~~~~~~~~~ertI~vrG~t~~~l~E~~~~i~Dal~~~~~al~~g-vVpG 82 (165)
+++++++++||+|+.|++ ..++++++..|...+.+ ||++||+|+..++|++|+++||+|+++++++++ +|||
T Consensus 329 ~l~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~----TIllrG~t~~~l~E~er~i~Dal~~~~~~i~~~~vvpG 404 (522)
T cd03340 329 TVSNITDDVLGTCGLFEERQVGGERYNIFTGCPKAKTC----TIILRGGAEQFIEEAERSLHDAIMIVRRAIKNDSVVAG 404 (522)
T ss_pred ccccCCccccccceEEEEEEECCEEEEEEECCCCCceE----EEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEC
Confidence 578899999999999984 35578888888765556 999999999999999999999999999999997 9999
Q ss_pred CcchHHHHHHHHHHHHhcc-ChhHHHHHHHHHHHHhHHHHHHHHhcCCChHH-HHHHHhc---CC-CceeEeecCCcee-
Q 039968 83 GGGISLLHASKELDELEIT-NSSQKIGVQIIQNALKMPVHAIASSAGVAGSF-VGKLLAQ---EN-HDLACDATTERLV- 155 (165)
Q Consensus 83 G~G~~e~~~~~~L~~~~~~-~~~~~~g~~~~~~AL~~~~~~la~NaG~d~~~-v~~l~~~---~~-~~~G~d~~~~~~~- 155 (165)
| |++|++++..|++++.. ++++++++++|++||+.||++|++|||+|+.+ +.+|++. ++ .++|+|+.+|++.
T Consensus 405 G-G~~E~~ls~~l~~~~~~~~~~~~~~~~~fa~aL~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~i~d 483 (522)
T cd03340 405 G-GAIEMELSKYLRDYSRTIAGKQQLVINAFAKALEIIPRQLCDNAGFDATDILNKLRQKHAQGGGKWYGVDINNEGIAD 483 (522)
T ss_pred c-CHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCCeeeeeCCCCcccc
Confidence 9 99999999999998665 88999999999999999999999999999999 9999874 33 5799999999999
Q ss_pred eccCccccCC
Q 039968 156 LKELRISDRA 165 (165)
Q Consensus 156 ~~~~gI~dp~ 165 (165)
|++.|||||+
T Consensus 484 ~~~~gV~dp~ 493 (522)
T cd03340 484 NFEAFVWEPS 493 (522)
T ss_pred hhhcCceEcH
Confidence 9999999995
No 29
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2e-33 Score=250.60 Aligned_cols=154 Identities=19% Similarity=0.222 Sum_probs=137.4
Q ss_pred CCCCCCcCCceeeeEEEEee---cceEEEecccc-ceeecccceEEEcCCcHHHHHHHHHHHHHHHHHHHHHHhcC-ccc
Q 039968 7 KIPDFDLEHIMSRFWVIVSK---NETIVLGRCLS-MQEIEEERSGQVGGSSKADVRKKKKIVTNALNAAKAAMEEG-ILP 81 (165)
Q Consensus 7 ~l~~~~~~~LG~a~~v~v~~---~~~~~i~~~~~-~~~~~~ertI~vrG~t~~~l~E~~~~i~Dal~~~~~al~~g-vVp 81 (165)
+++++++++||+|+.|++.+ +.++++.++.. ...+ ||+|||+|+++++|++|+++||||++|+++++| |||
T Consensus 327 ~l~~~~~~~LG~a~~v~~~~ig~~~~~~i~~~~~~~~~~----tI~lrG~t~~~l~E~er~i~DAl~~~k~ai~~~~vVp 402 (531)
T TIGR02346 327 RLGAPQPEEIGYVDSVYVSEIGGQKVTVFKQENGDSKIS----TIILRGSTKNLLDDIERAIDDGVNVIKALVKDNRFLP 402 (531)
T ss_pred ccccCCHhHccccceEEEEEECCEEEEEEEccCCCCCeE----EEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 46788999999999998764 46777766552 2325 899999999999999999999999999999999 999
Q ss_pred CCcchHHHHHHHHHHHHhcc-ChhHHHHHHHHHHHHhHHHHHHHHhcCCChHH-HHHHHhc---CCCceeEeecCCc--e
Q 039968 82 GGGGISLLHASKELDELEIT-NSSQKIGVQIIQNALKMPVHAIASSAGVAGSF-VGKLLAQ---ENHDLACDATTER--L 154 (165)
Q Consensus 82 GG~G~~e~~~~~~L~~~~~~-~~~~~~g~~~~~~AL~~~~~~la~NaG~d~~~-v~~l~~~---~~~~~G~d~~~~~--~ 154 (165)
|| |++|++++..|++++.. ++++|+++++|++||+.||++|++|||+|+.+ +.+|+.. ++.++|||+.+++ +
T Consensus 403 GG-G~~e~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~Gid~~~~~~~i 481 (531)
T TIGR02346 403 GA-GATEIELALRLKKYANKLPGLDQYAIKKFAEAFEIIPRTLAENAGLNPNEVIPKLYAAHKKGNTSSGIDIEAESDGV 481 (531)
T ss_pred Cc-CHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCccceeeeCCCccc
Confidence 99 99999999999998665 88999999999999999999999999999999 9999764 4567999999999 5
Q ss_pred e-eccCccccCC
Q 039968 155 V-LKELRISDRA 165 (165)
Q Consensus 155 ~-~~~~gI~dp~ 165 (165)
. |++.|||||.
T Consensus 482 ~d~~~~gI~dp~ 493 (531)
T TIGR02346 482 KDASEAGIYDNL 493 (531)
T ss_pred cChhhcCceEcH
Confidence 8 9999999994
No 30
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.6e-33 Score=247.14 Aligned_cols=154 Identities=19% Similarity=0.254 Sum_probs=137.1
Q ss_pred CCCCCCcCCcee-eeEEEEe---ecceEEEeccccceeecccceEEEcCCcHHHHHHHHHHHHHHHHHHHHHHhcC-ccc
Q 039968 7 KIPDFDLEHIMS-RFWVIVS---KNETIVLGRCLSMQEIEEERSGQVGGSSKADVRKKKKIVTNALNAAKAAMEEG-ILP 81 (165)
Q Consensus 7 ~l~~~~~~~LG~-a~~v~v~---~~~~~~i~~~~~~~~~~~ertI~vrG~t~~~l~E~~~~i~Dal~~~~~al~~g-vVp 81 (165)
+++++++++||+ |+.+++. +++++++..|+..+.+ ||+|||+|+.+++|.||+++||+|+++++++++ +||
T Consensus 289 ~~~~l~~~~LG~~~~~~~~~~~~~~~~~~i~~~~~~~~~----TIllrG~t~~~l~e~er~l~DAl~v~~~~~~~~~~vp 364 (480)
T cd03337 289 RPEELTESDVGTGAGLFEVKKIGDEYFTFITECKDPKAC----TILLRGASKDVLNEVERNLQDAMAVARNIILNPKLVP 364 (480)
T ss_pred chhhCCHHHcCCcccEEEEEEeCCeEEEEEEcCCCCCEE----EEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEe
Confidence 467888999999 5555544 3567888877765557 999999999999999999999999999999995 999
Q ss_pred CCcchHHHHHHHHHHHHhcc-ChhHHHHHHHHHHHHhHHHHHHHHhcCCChHH-HHHHHhc---C-CCceeEeecCCcee
Q 039968 82 GGGGISLLHASKELDELEIT-NSSQKIGVQIIQNALKMPVHAIASSAGVAGSF-VGKLLAQ---E-NHDLACDATTERLV 155 (165)
Q Consensus 82 GG~G~~e~~~~~~L~~~~~~-~~~~~~g~~~~~~AL~~~~~~la~NaG~d~~~-v~~l~~~---~-~~~~G~d~~~~~~~ 155 (165)
|| |++|++++..|+++... ++++|+++++|++||+.||++||+|||+|+.+ +.+|++. + +.++|+|+.+|++.
T Consensus 365 GG-Ga~E~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~i~ 443 (480)
T cd03337 365 GG-GATEMAVSHALSEKAKSIEGVEQWPYKAVASALEVIPRTLAQNCGANVIRTLTELRAKHAQGENSTWGIDGETGDIV 443 (480)
T ss_pred CC-CHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCCeECeeccCCCcc
Confidence 99 99999999999998765 88999999999999999999999999999999 9999873 3 46799999999999
Q ss_pred -eccCccccCC
Q 039968 156 -LKELRISDRA 165 (165)
Q Consensus 156 -~~~~gI~dp~ 165 (165)
|++.|||||.
T Consensus 444 d~~~~gV~dp~ 454 (480)
T cd03337 444 DMKELGIWDPL 454 (480)
T ss_pred cchhccCeEcH
Confidence 9999999994
No 31
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-33 Score=233.67 Aligned_cols=154 Identities=16% Similarity=0.249 Sum_probs=143.3
Q ss_pred CCCCCCcCCceeeeEEEE-----eecceEEEeccccceeecccceEEEcCCcHHHHHHHHHHHHHHHHHHHHHHhcC-cc
Q 039968 7 KIPDFDLEHIMSRFWVIV-----SKNETIVLGRCLSMQEIEEERSGQVGGSSKADVRKKKKIVTNALNAAKAAMEEG-IL 80 (165)
Q Consensus 7 ~l~~~~~~~LG~a~~v~v-----~~~~~~~i~~~~~~~~~~~ertI~vrG~t~~~l~E~~~~i~Dal~~~~~al~~g-vV 80 (165)
+|+++++++||+|+.|.. ++|++.+|++|++-+++ ||.|||+++.+++|.||++|||||++||.+++. +|
T Consensus 203 rF~eL~~~kLG~aglVrE~sfgttkdkmlviEqc~nskaV----TifvRg~Nkmii~EakrslhdalCvirnlird~riv 278 (400)
T KOG0357|consen 203 RFSELTAEKLGFAGLVREISFGTTKDKMLVIEQCKNSKAV----TIFVRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVV 278 (400)
T ss_pred cHhhhCHhhccccceEEEEecccccceEEEEEecCCCceE----EEEEecCcceeHHHHHHHhhhhHHHHHHHhhcCeeE
Confidence 579999999999999975 47899999999998888 999999999999999999999999999999987 99
Q ss_pred cCCcchHHHHHHHHHHHHhcc-ChhHHHHHHHHHHHHhHHHHHHHHhcCCChHH-HHHHHhc----CCCceeEeecCCce
Q 039968 81 PGGGGISLLHASKELDELEIT-NSSQKIGVQIIQNALKMPVHAIASSAGVAGSF-VGKLLAQ----ENHDLACDATTERL 154 (165)
Q Consensus 81 pGG~G~~e~~~~~~L~~~~~~-~~~~~~g~~~~~~AL~~~~~~la~NaG~d~~~-v~~l~~~----~~~~~G~d~~~~~~ 154 (165)
+|| |++|+.|+..+.+-+.. ++.+||++++|++||+.||..||+|+|++|.+ ++++++. +++++|+|+.-..-
T Consensus 279 YgG-GaaEiscslav~~ead~~~g~eqya~rafa~ale~ipmalaensgl~pi~~ls~~ka~q~~~~~~~lGidcl~~G~ 357 (400)
T KOG0357|consen 279 YGG-GAAEISCALAVSQEADKIPGIEQYAFRAFADALESIPMALAENSGLDPIETLSDVKARQVKEMNPALGIDCLHKGT 357 (400)
T ss_pred ecC-chHHhhhhhHhhHhhccCCcHHHHHHHHHHHHHhhcchhhhhccCCCchhhhhHhHHHHHHhcCcccCcchhccCc
Confidence 999 99999999999998877 99999999999999999999999999999999 9999874 67899999987666
Q ss_pred e-eccCccccCC
Q 039968 155 V-LKELRISDRA 165 (165)
Q Consensus 155 ~-~~~~gI~dp~ 165 (165)
. |++++++||.
T Consensus 358 nDMk~~~vie~l 369 (400)
T KOG0357|consen 358 NDMKEQHVIETL 369 (400)
T ss_pred hhhhhhccHHHh
Confidence 7 9999999973
No 32
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.6e-33 Score=246.19 Aligned_cols=154 Identities=24% Similarity=0.318 Sum_probs=137.6
Q ss_pred CCCCCCcCCcee--eeEEEEe---ecceEEEecccc--ceeecccceEEEcCCcHHHHHHHHHHHHHHHHHHHHHHhcC-
Q 039968 7 KIPDFDLEHIMS--RFWVIVS---KNETIVLGRCLS--MQEIEEERSGQVGGSSKADVRKKKKIVTNALNAAKAAMEEG- 78 (165)
Q Consensus 7 ~l~~~~~~~LG~--a~~v~v~---~~~~~~i~~~~~--~~~~~~ertI~vrG~t~~~l~E~~~~i~Dal~~~~~al~~g- 78 (165)
.++++++.++|. |+.|+.+ +++++++..+.. .+.+ ||+|||+|+++++|++|++|||||++|+++++|
T Consensus 320 ~~~d~t~~~~G~~~~~~ve~~~~~~~~~~~~~~~~~~~~~~~----tI~vrgate~~ldE~er~i~DAL~~~~~ave~g~ 395 (524)
T COG0459 320 VLKDLTTIVLGEGAAGLVEETKTGDYDMEKLQERKAKAGGVA----TILVRGATEVELDEKERRIEDALNVVRAAVEEGK 395 (524)
T ss_pred ecccCceeecCccccceEEEeeccchhhhhhhhhhhcCCCeE----EEEECCccHhHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 468899999999 9999875 567777776664 3336 899999999999999999999999999999999
Q ss_pred cccCCcchHHHHHHHHHHHHh-ccCh-hHHHHHHHHHHHHhHHHHHHHHhcCCChHH-HHHHHhcCC-CceeEeecCCce
Q 039968 79 ILPGGGGISLLHASKELDELE-ITNS-SQKIGVQIIQNALKMPVHAIASSAGVAGSF-VGKLLAQEN-HDLACDATTERL 154 (165)
Q Consensus 79 vVpGG~G~~e~~~~~~L~~~~-~~~~-~~~~g~~~~~~AL~~~~~~la~NaG~d~~~-v~~l~~~~~-~~~G~d~~~~~~ 154 (165)
+|||| |++|+++++.|++++ ..++ ++|+|+++|++||+.||++||+|||+|+.+ +.+|++.+. +++|||+.++++
T Consensus 396 iV~GG-Ga~e~~~a~~L~~~~~~~~g~~e~~~i~~~a~Ale~ip~~La~NaG~d~~~v~~~L~~~~~~~~~G~d~~~~~~ 474 (524)
T COG0459 396 IVPGG-GAAEIEAALRLREYAMTVEGGDEQLGIEAFARALEAPPRQLAENAGLDPIEVLSKLRSAHATTNYGIDAFTGEY 474 (524)
T ss_pred eEeCC-CHHHHHHHHHHHhhhccCCchHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhcccCCccceeccCCcc
Confidence 99999 999999999999983 3355 999999999999999999999999999999 999998754 569999999999
Q ss_pred -e-eccCccccCC
Q 039968 155 -V-LKELRISDRA 165 (165)
Q Consensus 155 -~-~~~~gI~dp~ 165 (165)
. |++.|||||+
T Consensus 475 ~~dm~~~GI~dP~ 487 (524)
T COG0459 475 EDDMIEAGIIDPL 487 (524)
T ss_pred ccchHhccCcChH
Confidence 7 9999999994
No 33
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=3.8e-32 Score=238.38 Aligned_cols=154 Identities=27% Similarity=0.402 Sum_probs=138.4
Q ss_pred CCCCCCcCCceeeeEEEEee---cceEEEeccccceeecccceEEEcCCcHHHHHHHHHHHHHHHHHHHHHHhc-CcccC
Q 039968 7 KIPDFDLEHIMSRFWVIVSK---NETIVLGRCLSMQEIEEERSGQVGGSSKADVRKKKKIVTNALNAAKAAMEE-GILPG 82 (165)
Q Consensus 7 ~l~~~~~~~LG~a~~v~v~~---~~~~~i~~~~~~~~~~~ertI~vrG~t~~~l~E~~~~i~Dal~~~~~al~~-gvVpG 82 (165)
+++++++++||+|+.|++.+ .+++++.+++..+.+ ||+|||+|+.+++|+||+++||++++++++++ ++|||
T Consensus 276 ~~~~~~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~----TIllrG~t~~~l~e~~r~i~dal~~~~~~~~~~~~vpG 351 (464)
T cd00309 276 RLEDLTPEDLGTAGLVEETKIGDEKYTFIEGCKGGKVA----TILLRGATEVELDEAERSLHDALCAVRAAVEDGGIVPG 351 (464)
T ss_pred ccccCCcccCccccEEEEEEEcCeeEEEEEecCCCCEE----EEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHcCCcccC
Confidence 36788899999999999865 356777766654446 89999999999999999999999999999999 59999
Q ss_pred CcchHHHHHHHHHHHHhcc-ChhHHHHHHHHHHHHhHHHHHHHHhcCCChHH-HHHHHhc---CCCceeEeecCCcee-e
Q 039968 83 GGGISLLHASKELDELEIT-NSSQKIGVQIIQNALKMPVHAIASSAGVAGSF-VGKLLAQ---ENHDLACDATTERLV-L 156 (165)
Q Consensus 83 G~G~~e~~~~~~L~~~~~~-~~~~~~g~~~~~~AL~~~~~~la~NaG~d~~~-v~~l~~~---~~~~~G~d~~~~~~~-~ 156 (165)
| |++|++++..|+++... ++++|+++++|++||+.||++|++|||+|+.+ +.+|++. +..++|+|..++++. |
T Consensus 352 G-Ga~E~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~g~d~~~~~~~d~ 430 (464)
T cd00309 352 G-GAAEIELSKALEELAKTLPGKEQLGIEAFADALEVIPRTLAENAGLDPIEVVTKLRAKHAEGGGNAGGDVETGEIVDM 430 (464)
T ss_pred C-cHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhccCCCeeEECCCCcEeeh
Confidence 9 99999999999998775 89999999999999999999999999999999 9999874 334689999999999 9
Q ss_pred ccCccccCC
Q 039968 157 KELRISDRA 165 (165)
Q Consensus 157 ~~~gI~dp~ 165 (165)
++.|||||.
T Consensus 431 ~~~gI~dp~ 439 (464)
T cd00309 431 KEAGIIDPL 439 (464)
T ss_pred hhccCeecH
Confidence 999999994
No 34
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism. Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....
Probab=99.97 E-value=7.9e-30 Score=223.04 Aligned_cols=154 Identities=23% Similarity=0.405 Sum_probs=138.2
Q ss_pred CCCCCCcCCceeeeEE---EEeecceEEEe--ccccceeecccceEEEcCCcHHHHHHHHHHHHHHHHHHHHHHhcC-cc
Q 039968 7 KIPDFDLEHIMSRFWV---IVSKNETIVLG--RCLSMQEIEEERSGQVGGSSKADVRKKKKIVTNALNAAKAAMEEG-IL 80 (165)
Q Consensus 7 ~l~~~~~~~LG~a~~v---~v~~~~~~~i~--~~~~~~~~~~ertI~vrG~t~~~l~E~~~~i~Dal~~~~~al~~g-vV 80 (165)
+++++++++||+|+.| +++.++++++. .+.....+ ||+|||+|+.+++|++++++||+++++++++++ +|
T Consensus 293 ~~~~l~~~~lG~~~~v~~~~i~~~~~~~~~~~~~~~~~~~----Till~g~t~~~l~e~~~~i~dal~~~~~~~~~~~vv 368 (485)
T PF00118_consen 293 SLDDLSDEDLGFCKSVEEREIGNKKYIFIEGIGCLSSKIC----TILLRGPTEFELEERERSIHDALKVLRSALKDGGVV 368 (485)
T ss_dssp SCGGSTGGGSEEEEEEEEEEETSSEEEEEEEHSESSSSEE----EEEEEESSHHHHHHHHHHHHHHHHHHHHHHHSSEEE
T ss_pred ccccccchhhhhhhhhhhcccccccccccccccccccCce----EEEeccccchhHHHHHHHHHHHHHHHHHhccCCcee
Confidence 3467888889999999 45677888887 35444445 899999999999999999999999999999976 99
Q ss_pred cCCcchHHHHHHHHHHHHhcc-ChhHHHHHHHHHHHHhHHHHHHHHhcCCChHH-HHHHHh--cCCCceeEeecCCcee-
Q 039968 81 PGGGGISLLHASKELDELEIT-NSSQKIGVQIIQNALKMPVHAIASSAGVAGSF-VGKLLA--QENHDLACDATTERLV- 155 (165)
Q Consensus 81 pGG~G~~e~~~~~~L~~~~~~-~~~~~~g~~~~~~AL~~~~~~la~NaG~d~~~-v~~l~~--~~~~~~G~d~~~~~~~- 155 (165)
||| |++|++++.+|+++... ++++++++++|++||+.||++|++|||+|+.+ +++|+. +++.++|+|..++++.
T Consensus 369 pGG-G~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~h~~~~~~g~d~~~~~i~~ 447 (485)
T PF00118_consen 369 PGG-GATELHLSKALRKYAKSLSGKEQLAIEAFADALESIPKTLAQNAGLDSSEVISKLKSFHNNGNNYGIDLDTGEIVD 447 (485)
T ss_dssp ETT-THHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHTTHHHHHHHHHTTSTHHHHHHHHHHHHHSTTTEEEETTTTEEEE
T ss_pred ecC-cchhhhhhhhHHHhhhcccCchhhhHHHHHHHHHHhhhhhhhccCCCceeeehhhHhhhccccccCcCccCCceec
Confidence 999 99999999999888775 88999999999999999999999999999999 999988 3556999999999999
Q ss_pred eccCccccCC
Q 039968 156 LKELRISDRA 165 (165)
Q Consensus 156 ~~~~gI~dp~ 165 (165)
|.+.|||||.
T Consensus 448 ~~~~gi~dp~ 457 (485)
T PF00118_consen 448 MKEAGILDPL 457 (485)
T ss_dssp TTTTTCEEEH
T ss_pred cccccchhhH
Confidence 9999999994
No 35
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=8.8e-31 Score=228.73 Aligned_cols=159 Identities=46% Similarity=0.643 Sum_probs=143.8
Q ss_pred CCC-CCCCCCCcCCceeeeEEEEeecceEEEe----------cccccee-ecc-----------cc---------eEEEc
Q 039968 3 TLW-CKIPDFDLEHIMSRFWVIVSKNETIVLG----------RCLSMQE-IEE-----------ER---------SGQVG 50 (165)
Q Consensus 3 ~~~-~~l~~~~~~~LG~a~~v~v~~~~~~~i~----------~~~~~~~-~~~-----------er---------tI~vr 50 (165)
|++ ++++++++++||.|++|.+++++++++. ||.+++. ++. +| +|.||
T Consensus 317 e~~~l~le~~~~~dLG~~~evvvtkd~t~ll~g~~~~~~v~~rIeqik~~~e~t~~~ye~ekl~er~a~ls~gvavi~vG 396 (550)
T KOG0356|consen 317 ELSTLNLEDAKLEDLGEVGEVVVTKDDTMLLKGKGNKAQVEGRIEQIKEMIEETTSDYEKEKLNERLAKLSGGVAVIKVG 396 (550)
T ss_pred chhhcccccCchhhcCcceeEEEecCcceeeCCCCCHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHhcCCeEEEEec
Confidence 445 7889999999999999999999999988 5555554 222 33 39999
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHhcCcccCCcchHHHHHHHHHHHHhcc-ChhHHHHHHHHHHHHhHHHHHHHHhcCC
Q 039968 51 GSSKADVRKKKKIVTNALNAAKAAMEEGILPGGGGISLLHASKELDELEIT-NSSQKIGVQIIQNALKMPVHAIASSAGV 129 (165)
Q Consensus 51 G~t~~~l~E~~~~i~Dal~~~~~al~~gvVpGG~G~~e~~~~~~L~~~~~~-~~~~~~g~~~~~~AL~~~~~~la~NaG~ 129 (165)
|.|+.|++|++++++||||++++|+++|||||| |+++++|++.|.++... +..++.|++++.+||..|.++|++|||.
T Consensus 397 g~se~Ev~ekk~rv~dalnat~aaveeGivpGG-G~all~~~~~l~~lk~~~~~~~k~G~eiv~~Al~~P~~~IakNAGv 475 (550)
T KOG0356|consen 397 GHSEVEVNEKKDRVEDALNATRAAVEEGIVPGG-GTALLRAIPVLDELKATNNFDQKVGVEIVKKALRLPAQTIAKNAGV 475 (550)
T ss_pred CcchhhhhhhhhhHHHHHHHHHHHhhcCcccCC-chHHHHhhhhhhhcccccchHhhhhHHHHHHHHhhhHHHHHHhcCC
Confidence 999999999999999999999999999999999 99999999999998764 7889999999999999999999999999
Q ss_pred ChHH-HHHHHhcCCCceeEeecCCcee-eccCccccCC
Q 039968 130 AGSF-VGKLLAQENHDLACDATTERLV-LKELRISDRA 165 (165)
Q Consensus 130 d~~~-v~~l~~~~~~~~G~d~~~~~~~-~~~~gI~dp~ 165 (165)
|+.. +.+++. .++|||+.+++|+ |.+.||+||+
T Consensus 476 dg~~vv~Kv~~---~~~gyda~~~ey~dlv~~GiidP~ 510 (550)
T KOG0356|consen 476 DGSVVVEKVLN---DDYGYDAAKGEYVDLVEAGIIDPT 510 (550)
T ss_pred chHHHHHHHHh---hhhhhhhhcccHHHHHhccCCChH
Confidence 9999 999983 3899999999999 9999999995
No 36
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=8.6e-31 Score=221.95 Aligned_cols=153 Identities=16% Similarity=0.208 Sum_probs=144.7
Q ss_pred CCCCCcCCceeeeEEEE---eecceEEEeccccceeecccceEEEcCCcHHHHHHHHHHHHHHHHHHHHHHhcC-cccCC
Q 039968 8 IPDFDLEHIMSRFWVIV---SKNETIVLGRCLSMQEIEEERSGQVGGSSKADVRKKKKIVTNALNAAKAAMEEG-ILPGG 83 (165)
Q Consensus 8 l~~~~~~~LG~a~~v~v---~~~~~~~i~~~~~~~~~~~ertI~vrG~t~~~l~E~~~~i~Dal~~~~~al~~g-vVpGG 83 (165)
..++.++.||.|..++. ..+.|.+|++|+..+.| |+++||+-+..++|.+|++|||++.+|.|++.. +|+||
T Consensus 334 ~~~i~~~~LG~C~~FeE~QvG~eRyN~Fegcp~aktc----TliLRGgaeqfieE~eRSlHDAImIVrralkn~~vVaGG 409 (543)
T KOG0361|consen 334 VSDIKEEVLGTCALFEERQVGGERYNLFEGCPKAKTC----TLILRGGAEQFIEETERSLHDAIMIVRRALKNDSVVAGG 409 (543)
T ss_pred hhhcchhhcchhhhHHHHhhcchhhhhhcCCCcccee----EEEEeccHHHHHHHHhhhhhhHHHHHHHHhccCcEeeCC
Confidence 46788999999999974 57899999999998888 999999999999999999999999999999987 99999
Q ss_pred cchHHHHHHHHHHHHhcc-ChhHHHHHHHHHHHHhHHHHHHHHhcCCChHH-HHHHHhc---CCCceeEeecCCcee-ec
Q 039968 84 GGISLLHASKELDELEIT-NSSQKIGVQIIQNALKMPVHAIASSAGVAGSF-VGKLLAQ---ENHDLACDATTERLV-LK 157 (165)
Q Consensus 84 ~G~~e~~~~~~L~~~~~~-~~~~~~g~~~~~~AL~~~~~~la~NaG~d~~~-v~~l~~~---~~~~~G~d~~~~~~~-~~ 157 (165)
|+.||++|+.|++++.. .+++|+-+.+|++|||.||++|+.|+|+|... +++|+.+ +..++|+|..+..+. ++
T Consensus 410 -GaiEMElSk~lRd~S~ti~gK~q~~i~A~akalEvIPrqLc~NaGfDa~~ilnkLR~rHA~G~~w~Gvdi~~e~i~dn~ 488 (543)
T KOG0361|consen 410 -GAIEMELSKYLRDYSRTIAGKQQLFINAYAKALEVIPRQLCDNAGFDATNILNKLRQRHAQGEKWYGVDINTEGIADNF 488 (543)
T ss_pred -ceeeehHHHHHHHhhcccCcHHHHHHHHHHHHHHHhHHHHhhhcCCcHHHHHHHHHHHhhcCCceeeeeecccchhhHH
Confidence 99999999999999987 99999999999999999999999999999999 9999874 778999999999999 99
Q ss_pred cCccccCC
Q 039968 158 ELRISDRA 165 (165)
Q Consensus 158 ~~gI~dp~ 165 (165)
+..||||+
T Consensus 489 ~~~VwEP~ 496 (543)
T KOG0361|consen 489 EKFVWEPS 496 (543)
T ss_pred HhhccChH
Confidence 99999995
No 37
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=8.6e-29 Score=209.52 Aligned_cols=154 Identities=16% Similarity=0.209 Sum_probs=138.3
Q ss_pred CCCCCCcCCceeeeEEEEe---ec-ceEEEecccccee-ecccceEEEcCCcHHHHHHHHHHHHHHHHHHHHHHhcC-cc
Q 039968 7 KIPDFDLEHIMSRFWVIVS---KN-ETIVLGRCLSMQE-IEEERSGQVGGSSKADVRKKKKIVTNALNAAKAAMEEG-IL 80 (165)
Q Consensus 7 ~l~~~~~~~LG~a~~v~v~---~~-~~~~i~~~~~~~~-~~~ertI~vrG~t~~~l~E~~~~i~Dal~~~~~al~~g-vV 80 (165)
.++.++++.||+|+.|+.. .+ +.+-+..+++... + ||++||+++..++|.+|++|||||++|+..+.. .+
T Consensus 342 ~id~f~~d~Lg~adlveE~~~~G~gkivk~tg~~n~g~tv----sil~RGsn~lvleEaeRSlhDALCVirCLvk~r~li 417 (534)
T KOG0358|consen 342 DIDHFTADKLGSADLVEETDSSGEGKIVKITGIQNAGRTV----SILLRGSNKLVLEEAERSLHDALCVIRCLVKKRALI 417 (534)
T ss_pred hhhhcChhhcCcchhhhhcccCCCccEEEEEEeecCCCce----EEEEecCchhhhHHHhhhhhhhhHHHHhhhhcccee
Confidence 3678899999999999764 33 5555556666555 6 899999999999999999999999999999875 99
Q ss_pred cCCcchHHHHHHHHHHHHhcc-ChhHHHHHHHHHHHHhHHHHHHHHhcCCChHH-HHHHHhc---CCCceeEeecCCcee
Q 039968 81 PGGGGISLLHASKELDELEIT-NSSQKIGVQIIQNALKMPVHAIASSAGVAGSF-VGKLLAQ---ENHDLACDATTERLV 155 (165)
Q Consensus 81 pGG~G~~e~~~~~~L~~~~~~-~~~~~~g~~~~~~AL~~~~~~la~NaG~d~~~-v~~l~~~---~~~~~G~d~~~~~~~ 155 (165)
||| |+.||+++..|..++.. .+.+.|++++|++|||.+|.+||+|||++|.. +++|+++ +..+.|+|+++|.+.
T Consensus 418 ~GG-GapEieia~~L~~~a~t~eG~~~yc~rafA~AlEvIP~tLAeNAGLnpI~~VtELRn~haqge~~aGInVRkg~~t 496 (534)
T KOG0358|consen 418 AGG-GAPEIEIALRLSALARTLEGVEAYCWRAFADALEVIPYTLAENAGLNPIATVTELRNRHAQGEKNAGINVRKGGIT 496 (534)
T ss_pred cCC-CCcchHHHHHHHHHHhhhccchhHHHHHHHHHHhcccHhHHhhCCCChhhHHHHHHHHHhcCCcccceeeecccch
Confidence 999 99999999999998876 88999999999999999999999999999999 9999984 668999999999999
Q ss_pred -eccCccccCC
Q 039968 156 -LKELRISDRA 165 (165)
Q Consensus 156 -~~~~gI~dp~ 165 (165)
|++..|+.|.
T Consensus 497 ni~ee~VvQPl 507 (534)
T KOG0358|consen 497 NILEENVVQPL 507 (534)
T ss_pred hhHHHhcccce
Confidence 9999999984
No 38
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3.6e-28 Score=205.05 Aligned_cols=154 Identities=16% Similarity=0.238 Sum_probs=142.9
Q ss_pred CCCCCCCcCCceeeeEEE---EeecceEEEeccccceeecccceEEEcCCcHHHHHHHHHHHHHHHHHHHHHHhcC-ccc
Q 039968 6 CKIPDFDLEHIMSRFWVI---VSKNETIVLGRCLSMQEIEEERSGQVGGSSKADVRKKKKIVTNALNAAKAAMEEG-ILP 81 (165)
Q Consensus 6 ~~l~~~~~~~LG~a~~v~---v~~~~~~~i~~~~~~~~~~~ertI~vrG~t~~~l~E~~~~i~Dal~~~~~al~~g-vVp 81 (165)
-+|++++..+||+|+.++ +.+++..-|.+|+.-++| ||++||+|++.+||.+|++|||||++-...++. +|.
T Consensus 328 STFd~p~~~klG~C~~IeeimiGed~li~FSGv~~GeAc----tIVlrGat~q~LDEaeRslHDALcVLaqtv~esrvv~ 403 (527)
T KOG0363|consen 328 STFDNPELVKLGECDLIEEIMIGEDKLIKFSGVKLGEAC----TIVLRGATQQILDEAERSLHDALCVLAQTVKESRVVL 403 (527)
T ss_pred eccCCcchhccccchhhHHHhcCccceeeecccccccce----EEEEecccHHHHHHHHHHHHHHHHHHHHHhccceeee
Confidence 368899999999999885 578888888888876668 999999999999999999999999999998886 999
Q ss_pred CCcchHHHHHHHHHHHHhcc-ChhHHHHHHHHHHHHhHHHHHHHHhcCCChHH-HHHHHhc---CCCceeEeecCCcee-
Q 039968 82 GGGGISLLHASKELDELEIT-NSSQKIGVQIIQNALKMPVHAIASSAGVAGSF-VGKLLAQ---ENHDLACDATTERLV- 155 (165)
Q Consensus 82 GG~G~~e~~~~~~L~~~~~~-~~~~~~g~~~~~~AL~~~~~~la~NaG~d~~~-v~~l~~~---~~~~~G~d~~~~~~~- 155 (165)
|| |++||-.+..+.+++.. ++++..++.+|++||.++|.+||.|+|+|+.+ +++|++. +..++|+|+.+|++.
T Consensus 404 Gg-G~sEm~Ma~av~~~A~~~pGkea~AieAfarAL~qlPtiiaDNaG~dsaelva~Lra~h~~g~~t~Gld~~~G~i~d 482 (527)
T KOG0363|consen 404 GG-GCSEMLMAKAVDKEAQETPGKEALAIEAFARALRQLPTIIADNAGYDSAELVAQLRAEHYNGRTTMGLDVRNGEIGD 482 (527)
T ss_pred cC-CcHHHHHHHHHHHHHhhCCchhhHHHHHHHHHHHhcchhhhccCCCCHHHHHHHHHHHhhcCCcccccccccCchhh
Confidence 99 99999999999999886 99999999999999999999999999999999 9999984 678999999999999
Q ss_pred eccCccccC
Q 039968 156 LKELRISDR 164 (165)
Q Consensus 156 ~~~~gI~dp 164 (165)
|.+.||+|.
T Consensus 483 m~~~Gi~es 491 (527)
T KOG0363|consen 483 MRELGIVES 491 (527)
T ss_pred HHHhhhHHH
Confidence 999999985
No 39
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=3.3e-26 Score=195.81 Aligned_cols=153 Identities=18% Similarity=0.221 Sum_probs=141.8
Q ss_pred CCCCCCcCCceeeeEEEE---eecceEEEeccccceeecccceEEEcCCcHHHHHHHHHHHHHHHHHHHHHHhcC-cccC
Q 039968 7 KIPDFDLEHIMSRFWVIV---SKNETIVLGRCLSMQEIEEERSGQVGGSSKADVRKKKKIVTNALNAAKAAMEEG-ILPG 82 (165)
Q Consensus 7 ~l~~~~~~~LG~a~~v~v---~~~~~~~i~~~~~~~~~~~ertI~vrG~t~~~l~E~~~~i~Dal~~~~~al~~g-vVpG 82 (165)
+++|++|+.||.|+.|++ .+++||||+.|++++++ ||+|+|+|++.+.++|+.++|+|++++++++++ ++||
T Consensus 327 svddLtp~~LG~aglVye~tlGEEkfTFIE~~~~p~S~----TiLikgpnkht~tQikdairdglrav~ntl~d~~~i~G 402 (520)
T KOG0359|consen 327 SVDDLTPDYLGYAGLVYEYTLGEEKFTFIEKCNNPSSV----TILIKGPNKHTITQIKDAIRDGLRAVKNTLEDKCGIPG 402 (520)
T ss_pred ccccCChhhccccceeEEeeccceeeEeeecCCCCcce----EEEEeCCccchHHHHHHHHhhHHHHHHHHhhhcccccC
Confidence 569999999999999976 58899999999999999 999999999999999999999999999999998 9999
Q ss_pred CcchHHHHHHHHHHHHhcc-ChhHHHHHHHHHHHHhHHHHHHHHhcCCChHH-HHHHHhc-CCCceeEeecCCcee-ecc
Q 039968 83 GGGISLLHASKELDELEIT-NSSQKIGVQIIQNALKMPVHAIASSAGVAGSF-VGKLLAQ-ENHDLACDATTERLV-LKE 158 (165)
Q Consensus 83 G~G~~e~~~~~~L~~~~~~-~~~~~~g~~~~~~AL~~~~~~la~NaG~d~~~-v~~l~~~-~~~~~G~d~~~~~~~-~~~ 158 (165)
+ |+.++++..+|+....+ +++.++|+++|++||..+|++|++|+|+|+.+ +.+|.+. ...-+|+|..+|+.. ...
T Consensus 403 a-ga~~va~~~~lr~~k~~vkgra~~g~~afa~all~ipk~La~nsg~D~qe~l~~l~~e~~~~~~g~dl~~g~~~~~~~ 481 (520)
T KOG0359|consen 403 A-GAFEVALGRHLRESKKSVKGRAYLGVKAFANALLVIPKTLAKNSGLDEQETLVSLKKEHEVTLRGLDLFRGEECDPSR 481 (520)
T ss_pred c-hHHHHHHHHHHHHhhhccCchhhhhHHHHHhhhhhhhHHHHHhcCCchHHHHHHHHHhhhhhhcccccccCCccchhh
Confidence 9 99999999999987776 89999999999999999999999999999999 8888765 223469999999998 899
Q ss_pred CccccC
Q 039968 159 LRISDR 164 (165)
Q Consensus 159 ~gI~dp 164 (165)
.||||.
T Consensus 482 ~gi~Dn 487 (520)
T KOG0359|consen 482 KGIYDN 487 (520)
T ss_pred ccccch
Confidence 999996
No 40
>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.6e-24 Score=185.82 Aligned_cols=154 Identities=18% Similarity=0.215 Sum_probs=141.3
Q ss_pred CCCCCCcCCcee-eeEEEEe---ecceEEEeccccceeecccceEEEcCCcHHHHHHHHHHHHHHHHHHHHHHhcC-ccc
Q 039968 7 KIPDFDLEHIMS-RFWVIVS---KNETIVLGRCLSMQEIEEERSGQVGGSSKADVRKKKKIVTNALNAAKAAMEEG-ILP 81 (165)
Q Consensus 7 ~l~~~~~~~LG~-a~~v~v~---~~~~~~i~~~~~~~~~~~ertI~vrG~t~~~l~E~~~~i~Dal~~~~~al~~g-vVp 81 (165)
+.+++.+.|.|+ |+.+++. ++.|+||..|..+++| ||++||+|+.+++|.+|.+.||+.+.|+.+-+. +||
T Consensus 330 rpedl~e~dvGt~agLf~~kK~gdeyf~f~~~Ck~pkaC----tillrg~skdil~e~ernlqda~~varn~ii~PklvP 405 (527)
T KOG0364|consen 330 RPEDLPERDVGTGAGLFEVKKIGDEYFTFFTDCKEPKAC----TILLRGPSKDILNEVERNLQDAMGVARNVIINPKLVP 405 (527)
T ss_pred ChhhCchhccCcccceeeeeccCchhhhhhhhcCCCcce----EEEeccCchhHHHHHHHHhhhHHHHHHHhccCCcccC
Confidence 568899999995 8899875 5678999999999999 999999999999999999999999999999987 999
Q ss_pred CCcchHHHHHHHHHHHHhcc-ChhHHHHHHHHHHHHhHHHHHHHHhcCCChHH-HHHHHhc---CCCceeEeecCCcee-
Q 039968 82 GGGGISLLHASKELDELEIT-NSSQKIGVQIIQNALKMPVHAIASSAGVAGSF-VGKLLAQ---ENHDLACDATTERLV- 155 (165)
Q Consensus 82 GG~G~~e~~~~~~L~~~~~~-~~~~~~g~~~~~~AL~~~~~~la~NaG~d~~~-v~~l~~~---~~~~~G~d~~~~~~~- 155 (165)
|| |++||..|+.|.+.... ++-+|.-|.+++.||+.+|++|++|+|.++.. ++.++.. +...+|+|..++.++
T Consensus 406 GG-GAtEMAvs~~L~qksa~~~GVekwPY~Ava~AlEviPrtliqncGan~Ir~lTalr~kh~~G~~~~gi~g~tg~iVD 484 (527)
T KOG0364|consen 406 GG-GATEMAVSHELRQKSALMTGVEKWPYGAVAGALEVIPRTLIQNCGANPIRALTALRAKHKEGQRVWGIDGETGVIVD 484 (527)
T ss_pred Cc-cHHHHHHHHHHHHHHhhccchhccchhhhhcCceeccHHHHhhcCccHHHHHHHHHHHhcCcceeecccCceeeEee
Confidence 99 99999999999987665 88999999999999999999999999999998 8888764 456789999999999
Q ss_pred eccCccccCC
Q 039968 156 LKELRISDRA 165 (165)
Q Consensus 156 ~~~~gI~dp~ 165 (165)
|.+.++|+|.
T Consensus 485 m~~~~iwep~ 494 (527)
T KOG0364|consen 485 MVELGIWEPE 494 (527)
T ss_pred eeeccccchh
Confidence 9999999983
No 41
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=3.2e-23 Score=179.03 Aligned_cols=151 Identities=19% Similarity=0.185 Sum_probs=133.7
Q ss_pred CCCCcCCceeeeEEEE---eecceEEEeccccceeecccceEEEcCCcHHHHHHHHHHHHHHHHHHHHHHhcC-cccCCc
Q 039968 9 PDFDLEHIMSRFWVIV---SKNETIVLGRCLSMQEIEEERSGQVGGSSKADVRKKKKIVTNALNAAKAAMEEG-ILPGGG 84 (165)
Q Consensus 9 ~~~~~~~LG~a~~v~v---~~~~~~~i~~~~~~~~~~~ertI~vrG~t~~~l~E~~~~i~Dal~~~~~al~~g-vVpGG~ 84 (165)
+.+++..||+|+.|.. .+|+++++..-+.- .+ ||++||++++-+||++|++|||||++|..++++ +||||
T Consensus 341 etf~~~~lG~a~evvqeri~dde~ilikg~ka~-~a----SiILrgaNd~~~DEmers~hdaL~VlkrtLes~~vvpGG- 414 (545)
T KOG0360|consen 341 ETFEPASLGSADEVVQERIGDDELILIKGTKAT-SA----SIILRGANDFMLDEMERSLHDALCVLKRTLESKSVVPGG- 414 (545)
T ss_pred cccChhhccchhHHHHHhcccceeEEeccCccc-ee----eEEEecCCcccHhhhccchhhHHHHHHHHhccCccccCc-
Confidence 4678999999999964 46777776533322 24 899999999999999999999999999999999 99999
Q ss_pred chHHHHHHHHHHHHhcc-ChhHHHHHHHHHHHHhHHHHHHHHhcCCChHH-HHHHHhc-----------CCCceeEeecC
Q 039968 85 GISLLHASKELDELEIT-NSSQKIGVQIIQNALKMPVHAIASSAGVAGSF-VGKLLAQ-----------ENHDLACDATT 151 (165)
Q Consensus 85 G~~e~~~~~~L~~~~~~-~~~~~~g~~~~~~AL~~~~~~la~NaG~d~~~-v~~l~~~-----------~~~~~G~d~~~ 151 (165)
|++|.+++-+|+.++.. .+++|.++.-|+.||..+|++|+-|++.|+.+ +++++.. .-.++|+|...
T Consensus 415 G~vE~aLs~yle~~a~s~~srE~laiaefa~all~ipktla~naa~Dstelvt~lra~Hs~~q~~p~~~~~k~~GldL~n 494 (545)
T KOG0360|consen 415 GAVETALSIYLENFATSVGSREQLAIAEFAAALLSIPKTLAVNAAKDSTELVTKLRAYHSVSQDNPWRLLLKQYGLDLIN 494 (545)
T ss_pred cHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhcchHHHhhhhccccccccccccCCchhhccCCccccchhhCccccc
Confidence 99999999999999887 78999999999999999999999999999999 9999862 12468999999
Q ss_pred Ccee-eccCccccCC
Q 039968 152 ERLV-LKELRISDRA 165 (165)
Q Consensus 152 ~~~~-~~~~gI~dp~ 165 (165)
|++. .++.|+++|.
T Consensus 495 g~~~dn~~~g~~ep~ 509 (545)
T KOG0360|consen 495 GKIRDNKSAGSFEPP 509 (545)
T ss_pred cEeecceeeeeeccc
Confidence 9999 9999999995
No 42
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=2.2e-21 Score=168.36 Aligned_cols=153 Identities=19% Similarity=0.247 Sum_probs=128.5
Q ss_pred CCCCCCcCCceeeeEEEEee---cceEEEecccccee-ecccceEEEcCCcHHHHHHHHHHHHHHHHHHHHHHhcC-ccc
Q 039968 7 KIPDFDLEHIMSRFWVIVSK---NETIVLGRCLSMQE-IEEERSGQVGGSSKADVRKKKKIVTNALNAAKAAMEEG-ILP 81 (165)
Q Consensus 7 ~l~~~~~~~LG~a~~v~v~~---~~~~~i~~~~~~~~-~~~ertI~vrG~t~~~l~E~~~~i~Dal~~~~~al~~g-vVp 81 (165)
++..+.++.||+|+.|...+ +.+++|..-..... . ||++||+|+..+|+.||.++|+++.++..++++ ++|
T Consensus 330 rl~~P~~~~lG~~d~V~~~EiG~~~v~vF~~e~~~~~~~----TvVLRgst~s~LDd~ERAVddgV~tyK~l~~d~rLlp 405 (537)
T KOG0362|consen 330 RLFPPAPEELGYCDSVSTQEIGDTLVVVFRWESTGTRVA----TVVLRGATQSILDDAERAVDDGVNTYKALCSDSRLLP 405 (537)
T ss_pred hccCCCCccccccceeeeeecCCceEEEEeeccCCCcee----EEEEcccchhhHHHHHHHHHHhHHHhhhhccCCcccc
Confidence 56678889999999997653 34444431111111 3 799999999999999999999999999999987 999
Q ss_pred CCcchHHHHHHHHHHHHhcc-ChhHHHHHHHHHHHHhHHHHHHHHhcCCChHH-HHHHHhc--CCCceeEeecCCc-ee-
Q 039968 82 GGGGISLLHASKELDELEIT-NSSQKIGVQIIQNALKMPVHAIASSAGVAGSF-VGKLLAQ--ENHDLACDATTER-LV- 155 (165)
Q Consensus 82 GG~G~~e~~~~~~L~~~~~~-~~~~~~g~~~~~~AL~~~~~~la~NaG~d~~~-v~~l~~~--~~~~~G~d~~~~~-~~- 155 (165)
|+ |++|++++..|.++... ++..|+++..|++||+..|++||+|+|++..+ +++|... +..+.|+|+.... ..
T Consensus 406 Ga-gatEieLak~i~~~g~~~~Gl~q~Aik~fa~Ale~~PktlaEnagl~~~evia~ly~~h~~g~~~g~di~~e~~~~d 484 (537)
T KOG0362|consen 406 GA-GATEIELAKQISSRGATLPGLKQLAIKKFAEALEVLPKTLAENAGLAVTEVIAKLYAVHQGGKNLGMDIEAEGGTID 484 (537)
T ss_pred CC-chhHHHHHHHHHHhcccCCCcchhHHHHHHHHhccccHhHHHhcCCcHHHHHHHHHHhhcCCCcceeeeeccccccC
Confidence 99 99999999999999886 99999999999999999999999999999999 9999764 3456788887663 45
Q ss_pred eccCccccC
Q 039968 156 LKELRISDR 164 (165)
Q Consensus 156 ~~~~gI~dp 164 (165)
+.+.||||-
T Consensus 485 ~~~~~i~D~ 493 (537)
T KOG0362|consen 485 VREEGIWDT 493 (537)
T ss_pred hhhhchHHH
Confidence 899999983
No 43
>cd03333 chaperonin_like chaperonin_like superfamily. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains.
Probab=99.11 E-value=3.6e-10 Score=89.54 Aligned_cols=67 Identities=21% Similarity=0.281 Sum_probs=57.5
Q ss_pred CCCCCCcCCceeeeEEEEeec---ceEEEeccccceeecccceEEEcCCcHHHHHHHHHHHHHHHHHHHHHHhc
Q 039968 7 KIPDFDLEHIMSRFWVIVSKN---ETIVLGRCLSMQEIEEERSGQVGGSSKADVRKKKKIVTNALNAAKAAMEE 77 (165)
Q Consensus 7 ~l~~~~~~~LG~a~~v~v~~~---~~~~i~~~~~~~~~~~ertI~vrG~t~~~l~E~~~~i~Dal~~~~~al~~ 77 (165)
+++++++++||+|++|++.+. +++++.+++..+.+ ||+|||+|+++++|.||+++||++++++++++
T Consensus 140 ~~~~~~~~~lG~~~~v~~~~~~~~~~~~~~~~~~~~~~----tIllrG~t~~~l~e~kr~l~dal~~~~~~~~~ 209 (209)
T cd03333 140 SLEDLTPEDLGTAELVEETKIGEEKLTFIEGCKGGKAA----TILLRGATEVELDEVKRSLHDALCAVRAAVEE 209 (209)
T ss_pred ccccCChhhceeeeEEEEEEECCeEEEEEEcCCCCCEE----EEEEECCCHhHHHHHHHHHHHHHHHHHHHhhC
Confidence 367888999999999998754 46777777665556 99999999999999999999999999999864
No 44
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=99.06 E-value=4.1e-10 Score=92.78 Aligned_cols=66 Identities=14% Similarity=0.054 Sum_probs=57.9
Q ss_pred CCCCcCCceeeeEEEEee--------cceEEEeccccceeecccceEEEcCCcHHHHHHHHHHHHHHHHHHHHHHhcC
Q 039968 9 PDFDLEHIMSRFWVIVSK--------NETIVLGRCLSMQEIEEERSGQVGGSSKADVRKKKKIVTNALNAAKAAMEEG 78 (165)
Q Consensus 9 ~~~~~~~LG~a~~v~v~~--------~~~~~i~~~~~~~~~~~ertI~vrG~t~~~l~E~~~~i~Dal~~~~~al~~g 78 (165)
+++++++||+|+.|++.+ .++++|.+|+..+.+ ||+|||+|++.++|.||+++||++++++++.+.
T Consensus 181 ~~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~~~~~----TIlLRG~t~~~lde~eR~i~Dal~v~~~~~le~ 254 (261)
T cd03334 181 DLLTSPKLGTCESFRVRTYVEEHGRSKTLMFFEGCPKELGC----TILLRGGDLEELKKVKRVVEFMVFAAYHLKLET 254 (261)
T ss_pred hhcCcccCcCcceEEEEEecCcCCCceeEEEEecCCCCcee----EEEEECCCHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 468899999999998864 377888888765557 999999999999999999999999999998775
No 45
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=62.49 E-value=8.7 Score=32.09 Aligned_cols=26 Identities=12% Similarity=0.233 Sum_probs=24.2
Q ss_pred eEEEcCCcHHHHHHHHHHHHHHHHHHH
Q 039968 46 SGQVGGSSKADVRKKKKIVTNALNAAK 72 (165)
Q Consensus 46 tI~vrG~t~~~l~E~~~~i~Dal~~~~ 72 (165)
||++.| ++-.+++.++.|+|.+|+.+
T Consensus 122 TIVl~G-td~VveQa~rQiedlVnV~a 147 (309)
T KOG2663|consen 122 TIVLQG-TDGVVEQARRQIEDLVNVYA 147 (309)
T ss_pred eEEEec-cHHHHHHHHHHHHHhhhhhe
Confidence 799999 78899999999999999885
No 46
>PF07278 DUF1441: Protein of unknown function (DUF1441); InterPro: IPR009901 This entry is represented by Bacteriophage VT1-Sakai, H0025. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Enterobacterial proteins of around 160 residues in length. The function of this family is unknown.
Probab=54.59 E-value=96 Score=23.75 Aligned_cols=65 Identities=15% Similarity=0.244 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC-cccCCcchHHHHHHHHHHHHhccChhHHHHHHHHHHHHhHHHHHHHHhcCCChHHHH
Q 039968 57 VRKKKKIVTNALNAAKAAMEEG-ILPGGGGISLLHASKELDELEITNSSQKIGVQIIQNALKMPVHAIASSAGVAGSFVG 135 (165)
Q Consensus 57 l~E~~~~i~Dal~~~~~al~~g-vVpGG~G~~e~~~~~~L~~~~~~~~~~~~g~~~~~~AL~~~~~~la~NaG~d~~~v~ 135 (165)
-.+++.-...-..-++--.+.| +||-. +..+.+ ..-++++.+.|+..|-.|-+++|+.|..+.
T Consensus 66 p~dRK~w~qsE~eRlk~e~e~g~Lipa~------eV~~~~----------s~~~Kav~q~LetlPD~LERd~gL~p~~v~ 129 (152)
T PF07278_consen 66 PKDRKAWWQSENERLKFEKETGQLIPAE------EVRREM----------SEMAKAVVQVLETLPDILERDAGLPPEQVA 129 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccCcHH------HHHHHH----------HHHHHHHHHHHHHhhHHHHhcCCCCHHHHH
Confidence 3366666655555555555556 66655 112222 245689999999999999999999998754
Q ss_pred HH
Q 039968 136 KL 137 (165)
Q Consensus 136 ~l 137 (165)
.+
T Consensus 130 ~v 131 (152)
T PF07278_consen 130 RV 131 (152)
T ss_pred HH
Confidence 44
No 47
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=53.77 E-value=8.1 Score=39.27 Aligned_cols=78 Identities=18% Similarity=0.198 Sum_probs=57.7
Q ss_pred CCCCCCcCCceeeeEEEEee--------cceEEEeccccceeecccceEEEcCCcHHHHHHHHHHHHHHHHHHH-HHHhc
Q 039968 7 KIPDFDLEHIMSRFWVIVSK--------NETIVLGRCLSMQEIEEERSGQVGGSSKADVRKKKKIVTNALNAAK-AAMEE 77 (165)
Q Consensus 7 ~l~~~~~~~LG~a~~v~v~~--------~~~~~i~~~~~~~~~~~ertI~vrG~t~~~l~E~~~~i~Dal~~~~-~al~~ 77 (165)
+++.++...||+|..+++.+ .+.+|+++|+...-+ ||++||++..++++.|+-+.=++-++- .+++.
T Consensus 492 siDslt~~klg~C~~F~v~~~~e~hk~sKTlmffegc~~~lG~----TiLLrG~~~~eLkkVK~Vvq~~v~aay~l~LE~ 567 (1598)
T KOG0230|consen 492 SVDSLTSQKLGYCELFRVENYVEEHKPSKTLMFFEGCPKPLGC----TILLRGDSLEELKKVKHVVQYLVFAAYHLALET 567 (1598)
T ss_pred chhhhhccccCCCccHhhhhhhhcccchhhhHHhhcCCCCCCc----eEEecCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34568889999999998752 133566677765556 999999999999999998887776665 45555
Q ss_pred CcccCCcchHHH
Q 039968 78 GILPGGGGISLL 89 (165)
Q Consensus 78 gvVpGG~G~~e~ 89 (165)
-|+.-- |+...
T Consensus 568 SflaDe-~asi~ 578 (1598)
T KOG0230|consen 568 SFLADE-GASIS 578 (1598)
T ss_pred hhhhcc-CCccc
Confidence 577666 65543
No 48
>smart00574 POX domain associated with HOX domains.
Probab=46.48 E-value=52 Score=24.89 Aligned_cols=42 Identities=7% Similarity=0.013 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcC-cccCCcchHHHHHHHHHHH
Q 039968 55 ADVRKKKKIVTNALNAAKAAMEEG-ILPGGGGISLLHASKELDE 97 (165)
Q Consensus 55 ~~l~E~~~~i~Dal~~~~~al~~g-vVpGG~G~~e~~~~~~L~~ 97 (165)
..++|++++++--..-++..+.+. .|+|. |++-.+.+-+|+.
T Consensus 84 ~mL~eVd~RY~qY~~qmq~v~ssFe~vaG~-g~a~~yt~lAl~a 126 (140)
T smart00574 84 SMLEEVDRRYKHYYEQMQTVVSSFDQAAGL-GAAKPYTALALKT 126 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 457888888888888888888776 88999 8888777766644
No 49
>cd04240 AAK_UC AAK_UC: Uncharacterized (UC) amino acid kinase-like proteins found mainly in archaea and a few bacteria. Sequences in this CD are members of the Amino Acid Kinase (AAK) superfamily.
Probab=41.27 E-value=65 Score=25.34 Aligned_cols=9 Identities=56% Similarity=0.907 Sum_probs=7.4
Q ss_pred CcccCCcchH
Q 039968 78 GILPGGGGIS 87 (165)
Q Consensus 78 gvVpGG~G~~ 87 (165)
.+|||| |..
T Consensus 28 ~iV~GG-G~~ 36 (203)
T cd04240 28 VIVPGG-GPF 36 (203)
T ss_pred EEEcCC-cHH
Confidence 499999 876
No 50
>PF07526 POX: Associated with HOX; InterPro: IPR006563 This domain in found exclusively in plant proteins, associated with HOX domains which may suggest these proteins are homeodomain transcription factors.
Probab=40.30 E-value=52 Score=24.71 Aligned_cols=42 Identities=10% Similarity=0.069 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcC-cccCCcchHHHHHHHHHHH
Q 039968 55 ADVRKKKKIVTNALNAAKAAMEEG-ILPGGGGISLLHASKELDE 97 (165)
Q Consensus 55 ~~l~E~~~~i~Dal~~~~~al~~g-vVpGG~G~~e~~~~~~L~~ 97 (165)
..|+|++++++--..-++..+.+. .|.|. |++-.+.+-+|+.
T Consensus 84 ~mL~eVd~RY~qY~~Qmq~VvssFe~vaG~-gaA~~YtalAlqa 126 (140)
T PF07526_consen 84 SMLDEVDRRYRQYYDQMQAVVSSFEAVAGL-GAAAPYTALALQA 126 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CcchhhHHHHHHH
Confidence 367888888888888888888776 88999 8888777766644
No 51
>COG3797 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.06 E-value=26 Score=27.52 Aligned_cols=51 Identities=16% Similarity=0.257 Sum_probs=41.0
Q ss_pred eEEEcCCcHHHHHHHHHHHHH-HHHHHHHHHhcC-cccCCcchHHHHHHHHHHH
Q 039968 46 SGQVGGSSKADVRKKKKIVTN-ALNAAKAAMEEG-ILPGGGGISLLHASKELDE 97 (165)
Q Consensus 46 tI~vrG~t~~~l~E~~~~i~D-al~~~~~al~~g-vVpGG~G~~e~~~~~~L~~ 97 (165)
+|.|||.....+.|.+..++| .++.++.-+.+| +|-=+ .+.+.++-..|+.
T Consensus 10 ~InVGgg~kV~MAdLka~~~dlGf~~v~T~iaSGNlvf~s-~~~~~el~~klE~ 62 (178)
T COG3797 10 GVNVGGGRKVVMADLKAALTDLGFANVRTYIASGNLVFES-EAGAAELEAKLEA 62 (178)
T ss_pred eeeecCCceEeHHHHHHHHHHcCcchhhHhhhcCCEEEEc-CCChHHHHHHHHH
Confidence 799999999999999999999 689999999999 65544 4445555566665
No 52
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=36.42 E-value=24 Score=32.19 Aligned_cols=38 Identities=24% Similarity=0.308 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHhcCcccCCcchHHHHHHHHHHHHhc
Q 039968 62 KIVTNALNAAKAAMEEGILPGGGGISLLHASKELDELEI 100 (165)
Q Consensus 62 ~~i~Dal~~~~~al~~gvVpGG~G~~e~~~~~~L~~~~~ 100 (165)
+.+.+|+..+|++.+-=||.|| |+-+-.+...|..+..
T Consensus 217 ~eL~~A~~lik~ak~PlIvaGG-Gv~YS~A~~~L~af~E 254 (617)
T COG3962 217 RELADAAALIKSAKKPLIVAGG-GVLYSGAREALRAFAE 254 (617)
T ss_pred HHHHHHHHHHHhcCCCEEEecC-ceeechHHHHHHHHHH
Confidence 5577788888877666699999 9999888888877654
No 53
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=36.03 E-value=1.2e+02 Score=19.61 Aligned_cols=37 Identities=11% Similarity=0.281 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCcccCCcchHHHHHHHHH
Q 039968 56 DVRKKKKIVTNALNAAKAAMEEGILPGGGGISLLHASKEL 95 (165)
Q Consensus 56 ~l~E~~~~i~Dal~~~~~al~~gvVpGG~G~~e~~~~~~L 95 (165)
++--...+++|+|..+-.+++.|.++-- ++++-.+.|
T Consensus 16 el~Aed~AieDtiy~L~~al~~g~I~~d---~~lK~vR~L 52 (65)
T PF09454_consen 16 ELVAEDHAIEDTIYYLDRALQRGSIDLD---TFLKQVRSL 52 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSS-HH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHH---HHHHHHHHH
Confidence 4555678999999999999999877433 444443333
No 54
>PRK12784 hypothetical protein; Provisional
Probab=28.13 E-value=58 Score=22.31 Aligned_cols=24 Identities=4% Similarity=-0.043 Sum_probs=20.9
Q ss_pred CCCCCCcCCceeeeEEEEeecceE
Q 039968 7 KIPDFDLEHIMSRFWVIVSKNETI 30 (165)
Q Consensus 7 ~l~~~~~~~LG~a~~v~v~~~~~~ 30 (165)
.++++.+++.|...++.++++.++
T Consensus 4 ~ie~iyS~~~G~Vekifi~esSyV 27 (84)
T PRK12784 4 RMEEICSSYEGKVEEIFVNESSYV 27 (84)
T ss_pred ehhhhcCccccEEEEEEEcCCceE
Confidence 578999999999999999887665
No 55
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=24.87 E-value=3.5e+02 Score=21.35 Aligned_cols=64 Identities=16% Similarity=0.089 Sum_probs=41.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcCcccCCcchHHHHHHHHHHHHhcc---ChhHHHHHHHHHHHHhHH
Q 039968 53 SKADVRKKKKIVTNALNAAKAAMEEGILPGGGGISLLHASKELDELEIT---NSSQKIGVQIIQNALKMP 119 (165)
Q Consensus 53 t~~~l~E~~~~i~Dal~~~~~al~~gvVpGG~G~~e~~~~~~L~~~~~~---~~~~~~g~~~~~~AL~~~ 119 (165)
.+.++++.+.+++.-+...+..+..|--.-. +....+..|+++... +..-..+++.|+.+|..+
T Consensus 7 ~E~~~~~l~~~l~kl~K~~~~~~~ag~~~~~---a~~~F~~~L~~~~~~~~~d~~i~~~l~kF~~~l~el 73 (200)
T cd07603 7 VEADVSELETRLEKLLKLCNGMVDSGKTYVN---ANSLFVNSLNDLSDYFRDDSLVQNCLNKFIQALQEM 73 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHH
Confidence 4778999999999999999988877522111 445566677776643 222344566666666544
No 56
>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []. Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process
Probab=24.62 E-value=2.3e+02 Score=21.08 Aligned_cols=51 Identities=10% Similarity=-0.062 Sum_probs=35.1
Q ss_pred eEEEcCCcHHHHHHHHHHHHHHHHHHHHHHhcC-cccCCcchHHHHHHHHHHH
Q 039968 46 SGQVGGSSKADVRKKKKIVTNALNAAKAAMEEG-ILPGGGGISLLHASKELDE 97 (165)
Q Consensus 46 tI~vrG~t~~~l~E~~~~i~Dal~~~~~al~~g-vVpGG~G~~e~~~~~~L~~ 97 (165)
-|+++|+....-+..-.+-..-...+|.++++| .|.|= +.-++.+.+.|.+
T Consensus 10 ~i~lpGg~pe~~~~~l~~~~~~~~~I~~~~~~G~pi~ae-CGG~~~Lg~~i~d 61 (158)
T PF07685_consen 10 GIYLPGGYPELFALELSRNRGLKEAIREAAEAGGPIYAE-CGGYQYLGESIID 61 (158)
T ss_pred EEEECCCcHHHHHHHHHHHhCHHHHHHHHHHcCCcEEEE-chHHHHHHHHHhh
Confidence 378888777666666555555667788888887 56555 4457777787763
No 57
>KOG2829 consensus E2F-like protein [Transcription]
Probab=23.69 E-value=73 Score=27.15 Aligned_cols=21 Identities=29% Similarity=0.314 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 039968 54 KADVRKKKKIVTNALNAAKAA 74 (165)
Q Consensus 54 ~~~l~E~~~~i~Dal~~~~~a 74 (165)
+...+-++||+-|||||+++.
T Consensus 91 ~yd~KNIRRRVYDALNVlmAm 111 (326)
T KOG2829|consen 91 EYDQKNIRRRVYDALNVLMAM 111 (326)
T ss_pred ccchHHHHHHHHHHHHHHHHH
Confidence 344566899999999999954
No 58
>PF08988 DUF1895: Protein of unknown function (DUF1895); InterPro: IPR015081 The YscE protein, produced by the pathogen Yersinia, assumes a secondary structure composed of two anti-parallel alpha-helices separated by a flexible loop. The function of this protein is, as yet, unknown. ; PDB: 1ZW0_B 2P58_A 2UWJ_E 2Q1K_D 3PH0_B.
Probab=21.96 E-value=1.7e+02 Score=19.20 Aligned_cols=27 Identities=19% Similarity=0.330 Sum_probs=21.4
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhcC
Q 039968 52 SSKADVRKKKKIVTNALNAAKAAMEEG 78 (165)
Q Consensus 52 ~t~~~l~E~~~~i~Dal~~~~~al~~g 78 (165)
++..+...++..+..|...++..+..|
T Consensus 11 ~~~~~~~~i~~~L~~a~~~vkr~L~~G 37 (68)
T PF08988_consen 11 ASGEEARAIEQQLRQAQSQVKRKLDRG 37 (68)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 567778888888888888888887773
No 59
>TIGR02159 PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=21.16 E-value=3e+02 Score=20.65 Aligned_cols=45 Identities=11% Similarity=-0.023 Sum_probs=31.6
Q ss_pred CcCCceeeeEEEEeecceEEEeccccceeecccceEEEcCCcHHHHHHHHHHHHHHHHH
Q 039968 12 DLEHIMSRFWVIVSKNETIVLGRCLSMQEIEEERSGQVGGSSKADVRKKKKIVTNALNA 70 (165)
Q Consensus 12 ~~~~LG~a~~v~v~~~~~~~i~~~~~~~~~~~ertI~vrG~t~~~l~E~~~~i~Dal~~ 70 (165)
+.-+||..+.|.+.++... | +|.+.-+....++.++..++++|..
T Consensus 10 sIvdLG~Vr~V~v~gd~V~-V-------------tIt~Ty~gcpa~e~L~~~I~~aL~~ 54 (146)
T TIGR02159 10 SVTDLGMVREVDVDGGGVV-V-------------KFTPTYSGCPALEVIRQDIRDAVRA 54 (146)
T ss_pred CchhcCCeeEEEEECCEEE-E-------------EEEeCCCCCchHHHHHHHHHHHHHh
Confidence 4567899999888876432 2 4555555566778888888888765
Done!