BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>039969
MYSISHTSSISFPAKPATTFRCFAASDIPAGPNSLRWPHSSSAADISIRVGPDSEGTAVG
GSHGGVKVNAKEKKWSRNRESYLTDDSEPLPLPMTYPDSSPVPREEIDKRLRCDPEVQDC
KEVVYEWTGKCRSCQGSGYVSYYNKRGKEIICKCIPCLGIGYVQKITARKDIEVMEDLDN
GKPP

High Scoring Gene Products

Symbol, full name Information P value
SCO2
SNOWY COTYLEDON 2 		protein from Arabidopsis thaliana 4.9e-53

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  039969
        (184 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2094093 - symbol:SCO2 "SNOWY COTYLEDON 2" spec...   549  4.9e-53   1


>TAIR|locus:2094093 [details] [associations]
            symbol:SCO2 "SNOWY COTYLEDON 2" species:3702 "Arabidopsis
            thaliana" [GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0003756
            "protein disulfide isomerase activity" evidence=IDA] [GO:0009535
            "chloroplast thylakoid membrane" evidence=IDA] [GO:0009658
            "chloroplast organization" evidence=IMP] [GO:0005515 "protein
            binding" evidence=IPI] [GO:0043621 "protein self-association"
            evidence=IPI] EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0046872
            GO:GO:0009658 GO:GO:0009535 GO:GO:0003756 EMBL:EU402409
            EMBL:AY059925 EMBL:AY081606 IPI:IPI00529340 RefSeq:NP_566627.1
            UniGene:At.26601 IntAct:Q93YN0 PaxDb:Q93YN0 PRIDE:Q93YN0
            EnsemblPlants:AT3G19220.1 GeneID:821456 KEGG:ath:AT3G19220
            TAIR:At3g19220 eggNOG:NOG236976 HOGENOM:HOG000005868
            InParanoid:Q93YN0 OMA:KEVICKC PhylomeDB:Q93YN0
            ProtClustDB:CLSN2688555 Genevestigator:Q93YN0 Uniprot:Q93YN0
        Length = 187

 Score = 549 (198.3 bits), Expect = 4.9e-53, P = 4.9e-53
 Identities = 104/176 (59%), Positives = 126/176 (71%)

Query:     5 SHTSSISFPAKPATTFRCFAASDIPAGPNSLRWPHSSSAADISIRVGPDSEGTAVGGSHG 64
             SH   +  P  P+ + RC AA+DIP G + +R P  + +   + R    S   A GG+  
Sbjct:    12 SHRPLVFLPRLPSRSLRCRAAADIPLG-DGIRLPREADSTSDTARSRDVS--VAAGGNGE 68

Query:    65 GVKVNAKEKKWSRNRESYLTDDSEPLPLPMTYPDSSPVPREEIDKRLRCDPEVQDCKEVV 124
             G K   +   WS++ ESYL DD + LPLPMTYPD+SPV  + ID+RL+CDP V+DC+EVV
Sbjct:    69 GAKWRKRRLLWSKSGESYLVDDGDALPLPMTYPDTSPVSPDVIDRRLQCDPVVEDCREVV 128

Query:   125 YEWTGKCRSCQGSGYVSYYNKRGKEIICKCIPCLGIGYVQKITARKDIEVMEDLDN 180
             YEWTGKCRSCQGSG VSYY KRGKE+ICKCIPC GIGYVQKIT+R DIEVMEDLDN
Sbjct:   129 YEWTGKCRSCQGSGTVSYYKKRGKEVICKCIPCQGIGYVQKITSRTDIEVMEDLDN 184


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.133   0.419    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      184       184   0.00078  110 3  11 23  0.50    32
                                                     31  0.40    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  600 (64 KB)
  Total size of DFA:  180 KB (2104 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  21.73u 0.10s 21.83t   Elapsed:  00:00:01
  Total cpu time:  21.73u 0.10s 21.83t   Elapsed:  00:00:01
  Start:  Mon May 20 16:59:01 2013   End:  Mon May 20 16:59:02 2013

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