BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039969
(184 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q93YN0|SCO2_ARATH Protein disulfide-isomerase SCO2 OS=Arabidopsis thaliana GN=SCO2
PE=1 SV=1
Length = 187
Score = 207 bits (527), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 104/176 (59%), Positives = 126/176 (71%), Gaps = 3/176 (1%)
Query: 5 SHTSSISFPAKPATTFRCFAASDIPAGPNSLRWPHSSSAADISIRVGPDSEGTAVGGSHG 64
SH + P P+ + RC AA+DIP G + +R P + + + R S A GG+
Sbjct: 12 SHRPLVFLPRLPSRSLRCRAAADIPLG-DGIRLPREADSTSDTARSRDVS--VAAGGNGE 68
Query: 65 GVKVNAKEKKWSRNRESYLTDDSEPLPLPMTYPDSSPVPREEIDKRLRCDPEVQDCKEVV 124
G K + WS++ ESYL DD + LPLPMTYPD+SPV + ID+RL+CDP V+DC+EVV
Sbjct: 69 GAKWRKRRLLWSKSGESYLVDDGDALPLPMTYPDTSPVSPDVIDRRLQCDPVVEDCREVV 128
Query: 125 YEWTGKCRSCQGSGYVSYYNKRGKEIICKCIPCLGIGYVQKITARKDIEVMEDLDN 180
YEWTGKCRSCQGSG VSYY KRGKE+ICKCIPC GIGYVQKIT+R DIEVMEDLDN
Sbjct: 129 YEWTGKCRSCQGSGTVSYYKKRGKEVICKCIPCQGIGYVQKITSRTDIEVMEDLDN 184
>sp|P87154|DPOE_SCHPO DNA polymerase epsilon catalytic subunit A OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=pol2 PE=2 SV=1
Length = 2199
Score = 33.1 bits (74), Expect = 0.94, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 39 HSSSAADISIRVGPDSEGTAVGGSHGGVKVNAKEKKWSRNRESYLTDDSEPLPLPMTYPD 98
HS + D++IRVG + V G V+++ + R + + D E LP+ +PD
Sbjct: 232 HSRTLIDLNIRVG---QWYTVSYHEGHVQISLLASRIERAEPTIMAFDIETTKLPLKFPD 288
Query: 99 SS 100
SS
Sbjct: 289 SS 290
>sp|O93845|DPOE_EMENI DNA polymerase epsilon catalytic subunit A OS=Emericella nidulans
(strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 /
M139) GN=pol2 PE=3 SV=2
Length = 2207
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 39 HSSSAADISIRVGPDSEGTAVGGSHGGVKVNAKEKKWSRNRESYLTDDSEPLPLPMTYPD 98
H A D IR+G + V +HG + + E++ +R L D E LP+ +PD
Sbjct: 215 HVRVAIDKDIRIG---KWYTVEATHGIISLTCLEERLTRADPVVLAFDIETTKLPLKFPD 271
Query: 99 S 99
S
Sbjct: 272 S 272
>sp|Q4WXH8|DPOE_ASPFU DNA polymerase epsilon catalytic subunit A OS=Neosartorya fumigata
(strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100)
GN=pol2 PE=3 SV=1
Length = 2230
Score = 32.0 bits (71), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Query: 39 HSSSAADISIRVGPDSEGTAVGGSHGGVKVNAKEKKWSRNRESYLTDDSEPLPLPMTYPD 98
H A D IR+G + V HG + + E++ R L D E LP+ +PD
Sbjct: 242 HVRVAIDKDIRIG---KWYTVEAKHGVISLTCLEERLQRADPVILAFDIETTKLPLKFPD 298
Query: 99 S 99
S
Sbjct: 299 S 299
>sp|D3YX43|VSI10_MOUSE V-set and immunoglobulin domain-containing protein 10 OS=Mus
musculus GN=Vsig10 PE=4 SV=2
Length = 558
Score = 30.4 bits (67), Expect = 6.6, Method: Composition-based stats.
Identities = 35/139 (25%), Positives = 57/139 (41%), Gaps = 20/139 (14%)
Query: 22 CFAASDIPAGPNSLRWPHSSSAADISIR--------VGPDSEGTAVGGSHGGVKVNAKEK 73
C A G L+ + S A++S+R + PD E A+G H V +
Sbjct: 9 CLGALLARQGSAGLQLLLNPSRANLSVRPNSEVLPGIHPDLEAVAIGEVHDNVTLRCGSA 68
Query: 74 KWSRNRESYLTDDSEP---LPLPMTYPDSSPVPREEIDKRLRCDP-EVQD-----CKEVV 124
SR ++ +DSEP + + P ++P E LR + ++D C+EV+
Sbjct: 69 SGSRGLVTWYRNDSEPAFLVSFNSSLPPAAPRFSLEDAGALRIEALRLEDDGNYTCQEVL 128
Query: 125 YE---WTGKCRSCQGSGYV 140
E + + R G YV
Sbjct: 129 NETHWFPVRLRVASGPAYV 147
>sp|Q05B30|WDR91_XENTR WD repeat-containing protein 91 OS=Xenopus tropicalis GN=wdr91 PE=2
SV=1
Length = 751
Score = 30.4 bits (67), Expect = 7.2, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 39/90 (43%), Gaps = 7/90 (7%)
Query: 14 AKPATTFRCFAASDIPAGPNSL-RWPHSSSAADISIRVGPDSEGTAVGGSHGGVKVNAKE 72
A A T+R D P+ P L + PH S D R+G G+ + SH +N
Sbjct: 201 ALQAETYRL--RKDGPSEPLVLHKLPHYVSNMD---RLGDSELGSNIMSSHSNTNMNTPS 255
Query: 73 KKWSRNRESYLTDDSEPLPLPMTYPD-SSP 101
++ S S L + +P P T P SSP
Sbjct: 256 QRTSGFLSSLLAQNKKPPPPKSTLPSVSSP 285
>sp|Q75VW3|DNAJ_HYDTT Chaperone protein DnaJ OS=Hydrogenobacter thermophilus (strain DSM
6534 / IAM 12695 / TK-6) GN=dnaJ PE=3 SV=1
Length = 356
Score = 30.0 bits (66), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 14/99 (14%)
Query: 68 VNAKEKKWSRNRESYLTDDSEPLPLPMTYPDSSPVPREEIDKRLRCDPEVQDC-----KE 122
+ + ++K R+ Y+ D E + M SP P++ D RL+ + +++ K+
Sbjct: 69 LKSGDEKSYRDFMEYIQDFLESIWQGMR---RSPKPKKGGDVRLKLELTLEEAAFGCEKD 125
Query: 123 VVYEWTGKCRSCQGSGYVSYYNKRGKEIICKCIPCLGIG 161
+ YE C +C+G GYV K C C G G
Sbjct: 126 IEYERWIDCPTCEGKGYVGKMEK------VTCHACEGTG 158
>sp|Q8IXR5|F178B_HUMAN Protein FAM178B OS=Homo sapiens GN=FAM178B PE=2 SV=2
Length = 827
Score = 30.0 bits (66), Expect = 9.3, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 7/82 (8%)
Query: 25 ASDIPAGPNSL--RWPHSSSAADISIRV-GPDSEGTAVGGSHGGVKVNAKEKKWSRNRES 81
AS I +GP R+ SA I I + G DS+ TA HG + +N + + +
Sbjct: 47 ASYIESGPEEFYQRFKKCFSATHIFISIKGKDSQNTA----HGYLILNRTLHQQLKIKNP 102
Query: 82 YLTDDSEPLPLPMTYPDSSPVP 103
+L SE + +P T P +P
Sbjct: 103 FLAPSSEAVRIPATLPHPGALP 124
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.133 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,786,087
Number of Sequences: 539616
Number of extensions: 3298975
Number of successful extensions: 6695
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 6632
Number of HSP's gapped (non-prelim): 94
length of query: 184
length of database: 191,569,459
effective HSP length: 110
effective length of query: 74
effective length of database: 132,211,699
effective search space: 9783665726
effective search space used: 9783665726
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 57 (26.6 bits)