Query 039969
Match_columns 184
No_of_seqs 16 out of 18
Neff 2.0
Searched_HMMs 46136
Date Fri Mar 29 03:50:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039969.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039969hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00684 DnaJ_CXXCXGXG: DnaJ c 93.1 0.11 2.3E-06 35.6 3.0 35 130-164 17-54 (66)
2 PLN03165 chaperone protein dna 91.0 0.21 4.4E-06 38.9 2.7 34 130-163 54-87 (111)
3 PRK14298 chaperone protein Dna 89.3 0.31 6.7E-06 43.2 2.7 19 147-165 194-212 (377)
4 PRK14282 chaperone protein Dna 89.2 0.31 6.7E-06 42.8 2.6 16 150-165 208-223 (369)
5 PRK14288 chaperone protein Dna 89.1 0.37 8.1E-06 42.5 3.1 37 129-165 157-206 (369)
6 PRK14300 chaperone protein Dna 88.9 0.41 8.9E-06 42.2 3.2 16 150-165 197-212 (372)
7 TIGR02349 DnaJ_bact chaperone 88.8 0.25 5.4E-06 42.7 1.8 15 151-165 200-214 (354)
8 PRK14278 chaperone protein Dna 88.4 0.35 7.6E-06 42.8 2.5 16 150-165 195-210 (378)
9 PRK14280 chaperone protein Dna 88.0 0.54 1.2E-05 41.5 3.4 16 150-165 199-214 (376)
10 PRK14297 chaperone protein Dna 87.9 0.5 1.1E-05 41.6 3.1 15 151-165 205-219 (380)
11 PRK14279 chaperone protein Dna 87.8 0.47 1E-05 42.3 2.9 15 151-165 226-240 (392)
12 PRK14287 chaperone protein Dna 87.6 0.55 1.2E-05 41.5 3.2 35 130-164 157-208 (371)
13 PRK14301 chaperone protein Dna 86.7 0.41 8.9E-06 42.3 1.9 36 130-165 163-211 (373)
14 PRK14276 chaperone protein Dna 86.6 0.65 1.4E-05 41.0 3.1 18 148-165 200-217 (380)
15 PRK14292 chaperone protein Dna 86.4 0.5 1.1E-05 41.3 2.3 16 150-165 196-211 (371)
16 PRK14277 chaperone protein Dna 86.4 0.59 1.3E-05 41.4 2.8 16 150-165 211-226 (386)
17 PRK14296 chaperone protein Dna 86.3 0.74 1.6E-05 40.8 3.3 37 129-165 167-220 (372)
18 PRK14286 chaperone protein Dna 85.7 0.58 1.3E-05 41.3 2.3 15 151-165 203-217 (372)
19 PRK14285 chaperone protein Dna 85.5 0.55 1.2E-05 41.4 2.1 16 150-165 198-213 (365)
20 PRK14289 chaperone protein Dna 85.4 0.71 1.5E-05 40.7 2.8 15 151-165 211-225 (386)
21 PRK14294 chaperone protein Dna 85.3 0.5 1.1E-05 41.5 1.8 15 151-165 197-211 (366)
22 PRK14281 chaperone protein Dna 85.3 0.55 1.2E-05 41.8 2.0 36 130-165 181-233 (397)
23 PRK14284 chaperone protein Dna 85.0 0.76 1.6E-05 40.8 2.7 14 152-165 212-225 (391)
24 PRK14293 chaperone protein Dna 84.9 0.58 1.3E-05 41.2 2.0 13 130-142 162-174 (374)
25 PF00684 DnaJ_CXXCXGXG: DnaJ c 84.8 0.66 1.4E-05 31.7 1.8 32 131-168 1-32 (66)
26 TIGR02642 phage_xxxx uncharact 84.4 0.54 1.2E-05 39.3 1.4 32 128-166 99-130 (186)
27 PRK14291 chaperone protein Dna 84.3 0.87 1.9E-05 40.3 2.8 14 152-165 209-222 (382)
28 PRK14283 chaperone protein Dna 84.0 0.68 1.5E-05 40.8 2.0 36 130-165 165-217 (378)
29 PRK14297 chaperone protein Dna 83.2 0.81 1.8E-05 40.4 2.1 36 129-164 166-204 (380)
30 PRK14295 chaperone protein Dna 82.9 1.1 2.3E-05 40.0 2.8 14 152-165 220-233 (389)
31 PRK10767 chaperone protein Dna 82.6 1.1 2.4E-05 39.2 2.7 15 151-165 195-209 (371)
32 PTZ00037 DnaJ_C chaperone prot 82.4 1.2 2.5E-05 40.6 2.9 14 152-165 209-222 (421)
33 PRK14287 chaperone protein Dna 82.4 1.1 2.3E-05 39.7 2.5 40 121-166 131-170 (371)
34 PRK14295 chaperone protein Dna 81.9 1.6 3.4E-05 39.0 3.4 35 129-164 184-218 (389)
35 PRK14290 chaperone protein Dna 81.5 1.4 3E-05 38.7 2.9 15 151-165 205-219 (365)
36 PRK14298 chaperone protein Dna 81.4 1.1 2.4E-05 39.7 2.3 34 130-163 160-196 (377)
37 PRK14276 chaperone protein Dna 81.3 1.1 2.4E-05 39.6 2.3 35 130-164 165-202 (380)
38 PRK14280 chaperone protein Dna 81.0 1.2 2.7E-05 39.3 2.5 35 130-164 162-199 (376)
39 COG0484 DnaJ DnaJ-class molecu 81.0 1 2.2E-05 41.4 2.0 17 150-166 196-212 (371)
40 PRK14278 chaperone protein Dna 80.9 1.5 3.2E-05 38.9 2.9 35 130-164 158-195 (378)
41 PRK14284 chaperone protein Dna 80.9 1.4 3E-05 39.2 2.7 32 130-163 177-209 (391)
42 PRK14291 chaperone protein Dna 80.7 1.4 3E-05 39.0 2.7 33 129-163 174-207 (382)
43 PRK10767 chaperone protein Dna 80.4 1.2 2.6E-05 39.0 2.2 33 130-164 161-194 (371)
44 PTZ00037 DnaJ_C chaperone prot 79.9 1.6 3.4E-05 39.8 2.9 37 129-165 167-206 (421)
45 TIGR02349 DnaJ_bact chaperone 79.1 1.4 3E-05 38.2 2.1 35 130-164 162-199 (354)
46 TIGR00630 uvra excinuclease AB 79.1 1.1 2.4E-05 44.7 1.7 71 95-165 694-773 (924)
47 PRK14288 chaperone protein Dna 76.7 1.9 4.1E-05 38.1 2.3 39 121-166 133-171 (369)
48 PRK14289 chaperone protein Dna 76.5 2 4.3E-05 37.9 2.4 34 130-163 173-209 (386)
49 PRK14293 chaperone protein Dna 76.2 1.7 3.6E-05 38.3 1.8 19 122-140 137-155 (374)
50 PRK14292 chaperone protein Dna 75.2 2.4 5.1E-05 37.2 2.5 34 130-163 159-195 (371)
51 PRK14294 chaperone protein Dna 75.0 2.5 5.5E-05 37.1 2.6 33 130-164 163-196 (366)
52 COG5204 SPT4 Transcription elo 73.8 3.1 6.7E-05 33.3 2.6 23 132-160 10-35 (112)
53 PRK14296 chaperone protein Dna 73.3 2.8 6E-05 37.2 2.5 41 121-167 142-182 (372)
54 PRK14290 chaperone protein Dna 72.9 3.6 7.9E-05 36.1 3.1 34 130-163 167-203 (365)
55 PLN03165 chaperone protein dna 71.8 3.5 7.6E-05 32.1 2.5 33 125-169 72-104 (111)
56 PRK14281 chaperone protein Dna 71.4 3.2 6.9E-05 37.1 2.4 39 122-167 157-195 (397)
57 PRK14282 chaperone protein Dna 70.5 2.9 6.4E-05 36.8 2.0 35 130-164 171-208 (369)
58 PRK00349 uvrA excinuclease ABC 69.5 2.6 5.6E-05 42.4 1.6 38 128-165 738-775 (943)
59 PRK14301 chaperone protein Dna 69.4 4 8.6E-05 36.2 2.6 39 121-165 137-175 (373)
60 PRK00635 excinuclease ABC subu 69.2 2.3 5E-05 45.7 1.3 37 128-164 1607-1643(1809)
61 PRK14277 chaperone protein Dna 69.2 3.9 8.4E-05 36.3 2.5 36 129-164 173-211 (386)
62 PRK14279 chaperone protein Dna 68.7 3.3 7.2E-05 37.0 2.0 34 129-164 191-225 (392)
63 COG0178 UvrA Excinuclease ATPa 68.6 3.5 7.7E-05 42.2 2.3 71 95-165 688-767 (935)
64 PRK14286 chaperone protein Dna 68.3 3.6 7.8E-05 36.4 2.1 34 129-164 168-202 (372)
65 PRK14285 chaperone protein Dna 68.0 3.1 6.8E-05 36.7 1.7 33 130-164 165-198 (365)
66 PLN03134 glycine-rich RNA-bind 65.3 7.7 0.00017 30.0 3.1 41 102-145 46-86 (144)
67 PRK14300 chaperone protein Dna 59.7 6.1 0.00013 35.0 1.9 34 129-164 163-197 (372)
68 PRK06921 hypothetical protein; 59.1 8.9 0.00019 32.3 2.7 29 108-142 18-46 (266)
69 COG1107 Archaea-specific RecJ- 56.2 9 0.0002 38.3 2.6 18 150-167 67-84 (715)
70 PRK14283 chaperone protein Dna 55.3 9.5 0.00021 33.7 2.4 39 122-166 140-178 (378)
71 COG0484 DnaJ DnaJ-class molecu 53.9 8.2 0.00018 35.6 1.8 16 123-138 137-152 (371)
72 PRK06835 DNA replication prote 53.8 5.9 0.00013 34.9 0.8 36 109-155 83-118 (329)
73 PF13453 zf-TFIIB: Transcripti 49.0 19 0.0004 22.7 2.4 28 130-160 1-28 (41)
74 cd00272 Chemokine_CC Chemokine 46.0 25 0.00053 23.4 2.7 25 123-150 16-40 (57)
75 KOG0712 Molecular chaperone (D 44.6 7.7 0.00017 35.4 0.1 36 123-165 165-200 (337)
76 PF07092 DUF1356: Protein of u 41.0 9.5 0.00021 33.4 0.1 12 130-141 40-51 (238)
77 PRK00635 excinuclease ABC subu 39.3 19 0.0004 39.2 2.0 35 128-165 720-754 (1809)
78 PF03589 Antiterm: Antitermina 37.5 8.1 0.00018 29.0 -0.7 37 128-164 5-45 (95)
79 PF10080 DUF2318: Predicted me 36.9 33 0.00071 26.3 2.5 27 139-165 18-49 (102)
80 PHA02779 E6 protein; Provision 36.2 28 0.00061 28.1 2.1 34 100-136 109-142 (150)
81 cd01121 Sms Sms (bacterial rad 35.7 17 0.00038 32.5 0.9 25 118-142 4-28 (372)
82 PRK11823 DNA repair protein Ra 35.1 17 0.00037 33.0 0.8 26 118-143 11-36 (446)
83 cd01129 PulE-GspE PulE/GspE Th 34.7 26 0.00056 29.5 1.8 12 129-140 251-262 (264)
84 KOG0712 Molecular chaperone (D 34.6 29 0.00063 31.8 2.2 34 130-163 145-182 (337)
85 PF03811 Zn_Tnp_IS1: InsA N-te 32.4 34 0.00074 21.9 1.7 29 128-157 5-35 (36)
86 smart00440 ZnF_C2C2 C2C2 Zinc 30.2 57 0.0012 20.8 2.4 28 130-158 2-35 (40)
87 PF09526 DUF2387: Probable met 28.7 63 0.0014 23.4 2.7 38 128-169 8-45 (71)
88 PHA02775 E6; Provisional 27.4 44 0.00095 27.5 1.9 33 100-135 124-156 (160)
89 PF14380 WAK_assoc: Wall-assoc 27.2 62 0.0013 23.2 2.5 45 103-155 44-91 (94)
90 PF14655 RAB3GAP2_N: Rab3 GTPa 26.9 25 0.00055 32.5 0.5 35 136-173 87-121 (415)
91 PF06807 Clp1: Pre-mRNA cleava 26.6 37 0.00081 26.0 1.3 17 154-170 149-165 (195)
92 PF05720 Dicty_CAD: Cell-cell 26.4 38 0.00083 25.8 1.3 22 77-98 4-25 (82)
93 PF07191 zinc-ribbons_6: zinc- 25.9 63 0.0014 23.9 2.3 29 125-153 27-62 (70)
94 PF08920 SF3b1: Splicing facto 25.8 38 0.00083 27.5 1.3 14 98-111 83-96 (144)
95 COG1326 Uncharacterized archae 24.8 31 0.00067 30.0 0.6 39 129-171 7-49 (201)
96 TIGR00416 sms DNA repair prote 24.3 30 0.00064 31.7 0.5 25 118-142 11-35 (454)
97 TIGR03655 anti_R_Lar restricti 23.0 71 0.0015 21.0 1.9 33 130-163 3-38 (53)
98 COG0267 RpmG Ribosomal protein 22.0 82 0.0018 21.9 2.1 28 149-176 5-32 (50)
99 PRK12336 translation initiatio 20.7 80 0.0017 26.2 2.2 39 130-170 100-138 (201)
100 TIGR02605 CxxC_CxxC_SSSS putat 20.5 1.2E+02 0.0027 19.2 2.7 34 123-160 2-35 (52)
101 cd00271 Chemokine_C Chemokine_ 20.5 1.1E+02 0.0024 21.9 2.7 23 123-150 25-47 (72)
102 cd00762 NAD_bind_malic_enz NAD 20.3 57 0.0012 28.6 1.4 53 88-158 134-189 (254)
103 PRK14873 primosome assembly pr 20.3 64 0.0014 31.4 1.8 19 126-146 390-408 (665)
104 TIGR00595 priA primosomal prot 20.2 62 0.0013 30.0 1.6 20 126-147 220-239 (505)
No 1
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=93.14 E-value=0.11 Score=35.64 Aligned_cols=35 Identities=29% Similarity=0.578 Sum_probs=25.4
Q ss_pred eecccccceeEEEeecC---CcEEeEeeeeccceeeEE
Q 039969 130 KCRSCQGSGYVSYYNKR---GKEIICKCIPCLGIGYVQ 164 (184)
Q Consensus 130 KCrsCqGtG~Vsyy~kr---GKe~ickCi~ClGiGYVr 164 (184)
.|..|.|+|+|...+.. .-.....|..|.|.|++-
T Consensus 17 ~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i 54 (66)
T PF00684_consen 17 TCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKII 54 (66)
T ss_dssp E-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-
T ss_pred CCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEE
Confidence 79999999999877642 226778899999999884
No 2
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=91.04 E-value=0.21 Score=38.92 Aligned_cols=34 Identities=41% Similarity=0.772 Sum_probs=22.2
Q ss_pred eecccccceeEEEeecCCcEEeEeeeeccceeeE
Q 039969 130 KCRSCQGSGYVSYYNKRGKEIICKCIPCLGIGYV 163 (184)
Q Consensus 130 KCrsCqGtG~Vsyy~krGKe~ickCi~ClGiGYV 163 (184)
+|..|+|+|+|..-..-+..+...|..|.|.|.+
T Consensus 54 ~C~~C~G~G~v~~~~~g~~q~~~~C~~C~G~Gk~ 87 (111)
T PLN03165 54 VCRFCVGSGNVTVELGGGEKEVSKCINCDGAGSL 87 (111)
T ss_pred CCCCCcCcCeEEEEeCCcEEEEEECCCCCCccee
Confidence 7888888888874331224556677777776643
No 3
>PRK14298 chaperone protein DnaJ; Provisional
Probab=89.27 E-value=0.31 Score=43.18 Aligned_cols=19 Identities=42% Similarity=0.739 Sum_probs=12.8
Q ss_pred CcEEeEeeeeccceeeEEE
Q 039969 147 GKEIICKCIPCLGIGYVQK 165 (184)
Q Consensus 147 GKe~ickCi~ClGiGYVrk 165 (184)
|+.+..+|..|.|-|+|++
T Consensus 194 G~~~~~~C~~C~G~g~v~~ 212 (377)
T PRK14298 194 GQVIESPCPVCSGTGKVRK 212 (377)
T ss_pred CcccCCCCCCCCCccEEEE
Confidence 3334456888888888864
No 4
>PRK14282 chaperone protein DnaJ; Provisional
Probab=89.17 E-value=0.31 Score=42.79 Aligned_cols=16 Identities=25% Similarity=0.430 Sum_probs=11.6
Q ss_pred EeEeeeeccceeeEEE
Q 039969 150 IICKCIPCLGIGYVQK 165 (184)
Q Consensus 150 ~ickCi~ClGiGYVrk 165 (184)
..-.|-.|.|-|+|++
T Consensus 208 ~~~~C~~C~G~g~v~~ 223 (369)
T PRK14282 208 PGEYCHECGGSGRIRR 223 (369)
T ss_pred CCCCCCCCCCceeEEE
Confidence 3456888888888866
No 5
>PRK14288 chaperone protein DnaJ; Provisional
Probab=89.07 E-value=0.37 Score=42.46 Aligned_cols=37 Identities=35% Similarity=0.735 Sum_probs=21.6
Q ss_pred ceecccccceeEEEee-------------cCCcEEeEeeeeccceeeEEE
Q 039969 129 GKCRSCQGSGYVSYYN-------------KRGKEIICKCIPCLGIGYVQK 165 (184)
Q Consensus 129 gKCrsCqGtG~Vsyy~-------------krGKe~ickCi~ClGiGYVrk 165 (184)
..|..|.|+|.|..-. -+|+-+.-+|-.|.|.|+|++
T Consensus 157 ~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~ 206 (369)
T PRK14288 157 ETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKIIKTPCQACKGKTYILK 206 (369)
T ss_pred cCCCCCCCCcEEEEEeceEEEEEecCCCCCCceEccccCccCCCcceEEE
Confidence 3466666666554211 223334456888888888865
No 6
>PRK14300 chaperone protein DnaJ; Provisional
Probab=88.92 E-value=0.41 Score=42.17 Aligned_cols=16 Identities=38% Similarity=0.731 Sum_probs=11.1
Q ss_pred EeEeeeeccceeeEEE
Q 039969 150 IICKCIPCLGIGYVQK 165 (184)
Q Consensus 150 ~ickCi~ClGiGYVrk 165 (184)
+.-.|..|.|-|||.+
T Consensus 197 ~~~~C~~C~G~g~v~~ 212 (372)
T PRK14300 197 IKNPCKKCHGMGRYHK 212 (372)
T ss_pred eCCCCCCCCCceEEEe
Confidence 3455788888888754
No 7
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=88.85 E-value=0.25 Score=42.71 Aligned_cols=15 Identities=33% Similarity=0.642 Sum_probs=9.8
Q ss_pred eEeeeeccceeeEEE
Q 039969 151 ICKCIPCLGIGYVQK 165 (184)
Q Consensus 151 ickCi~ClGiGYVrk 165 (184)
.-+|-.|.|-|+|++
T Consensus 200 ~~~C~~C~G~g~v~~ 214 (354)
T TIGR02349 200 KEPCSTCKGKGRVKE 214 (354)
T ss_pred CCCCCCCCCCcEecc
Confidence 345777777777754
No 8
>PRK14278 chaperone protein DnaJ; Provisional
Probab=88.45 E-value=0.35 Score=42.75 Aligned_cols=16 Identities=38% Similarity=0.600 Sum_probs=11.3
Q ss_pred EeEeeeeccceeeEEE
Q 039969 150 IICKCIPCLGIGYVQK 165 (184)
Q Consensus 150 ~ickCi~ClGiGYVrk 165 (184)
+.-+|..|.|-|+|++
T Consensus 195 ~~~~C~~C~G~g~v~~ 210 (378)
T PRK14278 195 IPDPCHECAGDGRVRA 210 (378)
T ss_pred eCCCCCCCCCceeEec
Confidence 4456888888888854
No 9
>PRK14280 chaperone protein DnaJ; Provisional
Probab=88.01 E-value=0.54 Score=41.47 Aligned_cols=16 Identities=50% Similarity=0.787 Sum_probs=11.2
Q ss_pred EeEeeeeccceeeEEE
Q 039969 150 IICKCIPCLGIGYVQK 165 (184)
Q Consensus 150 ~ickCi~ClGiGYVrk 165 (184)
+.-.|-.|.|-|+|++
T Consensus 199 ~~~~C~~C~G~g~v~~ 214 (376)
T PRK14280 199 IKEKCPTCHGKGKVRK 214 (376)
T ss_pred ecCCCCCCCCceEEEE
Confidence 3455788888888854
No 10
>PRK14297 chaperone protein DnaJ; Provisional
Probab=87.90 E-value=0.5 Score=41.65 Aligned_cols=15 Identities=40% Similarity=0.629 Sum_probs=10.2
Q ss_pred eEeeeeccceeeEEE
Q 039969 151 ICKCIPCLGIGYVQK 165 (184)
Q Consensus 151 ickCi~ClGiGYVrk 165 (184)
.-+|..|.|-|+|++
T Consensus 205 ~~~C~~C~G~g~v~~ 219 (380)
T PRK14297 205 EDPCNKCHGKGKVRK 219 (380)
T ss_pred CCCCCCCCCCeEEEe
Confidence 345777777777744
No 11
>PRK14279 chaperone protein DnaJ; Provisional
Probab=87.75 E-value=0.47 Score=42.26 Aligned_cols=15 Identities=27% Similarity=0.565 Sum_probs=10.3
Q ss_pred eEeeeeccceeeEEE
Q 039969 151 ICKCIPCLGIGYVQK 165 (184)
Q Consensus 151 ickCi~ClGiGYVrk 165 (184)
.-+|..|.|-|+|++
T Consensus 226 ~~~C~~C~G~g~v~~ 240 (392)
T PRK14279 226 EDPCEECKGTGVTTR 240 (392)
T ss_pred CCcCCCCCCCeEEEE
Confidence 445777777778754
No 12
>PRK14287 chaperone protein DnaJ; Provisional
Probab=87.64 E-value=0.55 Score=41.48 Aligned_cols=35 Identities=40% Similarity=0.717 Sum_probs=21.4
Q ss_pred eecccccceeEEEee-----------------cCCcEEeEeeeeccceeeEE
Q 039969 130 KCRSCQGSGYVSYYN-----------------KRGKEIICKCIPCLGIGYVQ 164 (184)
Q Consensus 130 KCrsCqGtG~Vsyy~-----------------krGKe~ickCi~ClGiGYVr 164 (184)
.|..|.|+|.|.... .+|+-+.-.|-.|.|-|+|+
T Consensus 157 ~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~ 208 (371)
T PRK14287 157 TCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKIIKQKCATCGGKGKVR 208 (371)
T ss_pred ccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCccccccCCCCCCeeEEe
Confidence 477777777664322 23333445677788888875
No 13
>PRK14301 chaperone protein DnaJ; Provisional
Probab=86.72 E-value=0.41 Score=42.27 Aligned_cols=36 Identities=42% Similarity=0.785 Sum_probs=19.9
Q ss_pred eecccccceeEEEee-------------cCCcEEeEeeeeccceeeEEE
Q 039969 130 KCRSCQGSGYVSYYN-------------KRGKEIICKCIPCLGIGYVQK 165 (184)
Q Consensus 130 KCrsCqGtG~Vsyy~-------------krGKe~ickCi~ClGiGYVrk 165 (184)
.|..|+|+|.|..-. -+|+-+.-.|..|.|-|+|++
T Consensus 163 ~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~ 211 (373)
T PRK14301 163 TCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRVITHPCPKCKGSGIVQQ 211 (373)
T ss_pred ccCCccCeeEEEEEeeeEEEEEeCCCCCceeeecCCCCCCCCCCceecc
Confidence 477777777665221 122223345677777777743
No 14
>PRK14276 chaperone protein DnaJ; Provisional
Probab=86.60 E-value=0.65 Score=41.04 Aligned_cols=18 Identities=39% Similarity=0.665 Sum_probs=12.2
Q ss_pred cEEeEeeeeccceeeEEE
Q 039969 148 KEIICKCIPCLGIGYVQK 165 (184)
Q Consensus 148 Ke~ickCi~ClGiGYVrk 165 (184)
+.+.-+|-.|.|-|||++
T Consensus 200 ~~~~~~C~~C~G~g~~~~ 217 (380)
T PRK14276 200 KEIKEPCQTCHGTGHEKQ 217 (380)
T ss_pred ccccCCCCCCCCceEEEE
Confidence 334456888888888854
No 15
>PRK14292 chaperone protein DnaJ; Provisional
Probab=86.43 E-value=0.5 Score=41.34 Aligned_cols=16 Identities=38% Similarity=0.596 Sum_probs=10.8
Q ss_pred EeEeeeeccceeeEEE
Q 039969 150 IICKCIPCLGIGYVQK 165 (184)
Q Consensus 150 ~ickCi~ClGiGYVrk 165 (184)
+...|..|.|-|||.+
T Consensus 196 ~~~~C~~C~G~g~v~~ 211 (371)
T PRK14292 196 ITDPCTVCRGRGRTLK 211 (371)
T ss_pred cCCCCCCCCCceEEee
Confidence 4456777777777744
No 16
>PRK14277 chaperone protein DnaJ; Provisional
Probab=86.43 E-value=0.59 Score=41.37 Aligned_cols=16 Identities=31% Similarity=0.685 Sum_probs=10.9
Q ss_pred EeEeeeeccceeeEEE
Q 039969 150 IICKCIPCLGIGYVQK 165 (184)
Q Consensus 150 ~ickCi~ClGiGYVrk 165 (184)
+.-+|..|.|-|+|++
T Consensus 211 ~~~~C~~C~G~g~v~~ 226 (386)
T PRK14277 211 ITDPCNKCGGTGRIRR 226 (386)
T ss_pred ccCCCCCCCCCcEEee
Confidence 3446888888888744
No 17
>PRK14296 chaperone protein DnaJ; Provisional
Probab=86.30 E-value=0.74 Score=40.75 Aligned_cols=37 Identities=35% Similarity=0.624 Sum_probs=21.7
Q ss_pred ceecccccceeEEEeec-----------------CCcEEeEeeeeccceeeEEE
Q 039969 129 GKCRSCQGSGYVSYYNK-----------------RGKEIICKCIPCLGIGYVQK 165 (184)
Q Consensus 129 gKCrsCqGtG~Vsyy~k-----------------rGKe~ickCi~ClGiGYVrk 165 (184)
.+|..|.|+|.|..-+. +|+-+.-+|-.|.|-|+|++
T Consensus 167 ~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~ 220 (372)
T PRK14296 167 HICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIKNKCKNCKGKGKYLE 220 (372)
T ss_pred ccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceeecccccCCCCceEEEE
Confidence 34666777776653322 23334456777778787754
No 18
>PRK14286 chaperone protein DnaJ; Provisional
Probab=85.65 E-value=0.58 Score=41.31 Aligned_cols=15 Identities=33% Similarity=0.603 Sum_probs=10.4
Q ss_pred eEeeeeccceeeEEE
Q 039969 151 ICKCIPCLGIGYVQK 165 (184)
Q Consensus 151 ickCi~ClGiGYVrk 165 (184)
.-.|-.|.|-|+|++
T Consensus 203 ~~~C~~C~G~g~~~~ 217 (372)
T PRK14286 203 SNPCKTCGGQGLQEK 217 (372)
T ss_pred cccCCCCCCCcEEec
Confidence 345777788888764
No 19
>PRK14285 chaperone protein DnaJ; Provisional
Probab=85.53 E-value=0.55 Score=41.37 Aligned_cols=16 Identities=38% Similarity=0.723 Sum_probs=10.9
Q ss_pred EeEeeeeccceeeEEE
Q 039969 150 IICKCIPCLGIGYVQK 165 (184)
Q Consensus 150 ~ickCi~ClGiGYVrk 165 (184)
+...|..|.|-|+|++
T Consensus 198 ~~~~C~~C~G~g~v~~ 213 (365)
T PRK14285 198 ISNPCKSCKGKGSLKK 213 (365)
T ss_pred cCCCCCCCCCCCEEec
Confidence 3446777788888754
No 20
>PRK14289 chaperone protein DnaJ; Provisional
Probab=85.45 E-value=0.71 Score=40.69 Aligned_cols=15 Identities=40% Similarity=0.547 Sum_probs=10.4
Q ss_pred eEeeeeccceeeEEE
Q 039969 151 ICKCIPCLGIGYVQK 165 (184)
Q Consensus 151 ickCi~ClGiGYVrk 165 (184)
.-.|..|.|-|+|++
T Consensus 211 ~~~C~~C~G~g~v~~ 225 (386)
T PRK14289 211 KKKCKKCGGEGIVYG 225 (386)
T ss_pred CcCCCCCCCCcEEee
Confidence 345777777788754
No 21
>PRK14294 chaperone protein DnaJ; Provisional
Probab=85.35 E-value=0.5 Score=41.45 Aligned_cols=15 Identities=33% Similarity=0.764 Sum_probs=11.5
Q ss_pred eEeeeeccceeeEEE
Q 039969 151 ICKCIPCLGIGYVQK 165 (184)
Q Consensus 151 ickCi~ClGiGYVrk 165 (184)
.-.|..|.|-|+|++
T Consensus 197 ~~~C~~C~G~g~v~~ 211 (366)
T PRK14294 197 VSPCKTCHGQGRVRV 211 (366)
T ss_pred CcCCCCCCCceEeec
Confidence 456888888888854
No 22
>PRK14281 chaperone protein DnaJ; Provisional
Probab=85.28 E-value=0.55 Score=41.83 Aligned_cols=36 Identities=33% Similarity=0.698 Sum_probs=22.3
Q ss_pred eecccccceeEEEee-----------------cCCcEEeEeeeeccceeeEEE
Q 039969 130 KCRSCQGSGYVSYYN-----------------KRGKEIICKCIPCLGIGYVQK 165 (184)
Q Consensus 130 KCrsCqGtG~Vsyy~-----------------krGKe~ickCi~ClGiGYVrk 165 (184)
.|..|.|+|.|..-. -+|+.+.-.|-.|.|-|+|++
T Consensus 181 ~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~ 233 (397)
T PRK14281 181 TCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVKDRCPACYGEGIKQG 233 (397)
T ss_pred cCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeeeCCCCCCCCCCccEec
Confidence 567777777664322 233444556888888888854
No 23
>PRK14284 chaperone protein DnaJ; Provisional
Probab=84.96 E-value=0.76 Score=40.77 Aligned_cols=14 Identities=29% Similarity=0.667 Sum_probs=10.0
Q ss_pred EeeeeccceeeEEE
Q 039969 152 CKCIPCLGIGYVQK 165 (184)
Q Consensus 152 ckCi~ClGiGYVrk 165 (184)
-.|..|.|-|+|++
T Consensus 212 ~~C~~C~G~g~v~~ 225 (391)
T PRK14284 212 DPCSVCRGQGRIKD 225 (391)
T ss_pred CcCCCCCCcceecc
Confidence 45778888888843
No 24
>PRK14293 chaperone protein DnaJ; Provisional
Probab=84.85 E-value=0.58 Score=41.15 Aligned_cols=13 Identities=38% Similarity=0.958 Sum_probs=8.5
Q ss_pred eecccccceeEEE
Q 039969 130 KCRSCQGSGYVSY 142 (184)
Q Consensus 130 KCrsCqGtG~Vsy 142 (184)
+|..|.|+|.|..
T Consensus 162 ~C~~C~G~G~~~~ 174 (374)
T PRK14293 162 TCSTCGGAGQVRR 174 (374)
T ss_pred eCCCCCCcceEEE
Confidence 5677777776653
No 25
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=84.81 E-value=0.66 Score=31.75 Aligned_cols=32 Identities=34% Similarity=0.718 Sum_probs=22.3
Q ss_pred ecccccceeEEEeecCCcEEeEeeeeccceeeEEEEee
Q 039969 131 CRSCQGSGYVSYYNKRGKEIICKCIPCLGIGYVQKITA 168 (184)
Q Consensus 131 CrsCqGtG~Vsyy~krGKe~ickCi~ClGiGYVrkiT~ 168 (184)
|..|.|+|.- .++. +-+|..|.|-|+|..+..
T Consensus 1 C~~C~G~G~~-----~~~~-~~~C~~C~G~G~~~~~~~ 32 (66)
T PF00684_consen 1 CPKCNGTGAK-----PGKK-PKTCPQCNGSGQVTRRQQ 32 (66)
T ss_dssp -CCCTTTSB------STTT--EE-TTSSSSSEEEEEEE
T ss_pred CCcCCCcccC-----CCCC-CcCCcCCCCeeEEEEEEe
Confidence 7899999964 2222 348999999999998774
No 26
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=84.36 E-value=0.54 Score=39.32 Aligned_cols=32 Identities=28% Similarity=0.724 Sum_probs=24.8
Q ss_pred eceecccccceeEEEeecCCcEEeEeeeeccceeeEEEE
Q 039969 128 TGKCRSCQGSGYVSYYNKRGKEIICKCIPCLGIGYVQKI 166 (184)
Q Consensus 128 tgKCrsCqGtG~Vsyy~krGKe~ickCi~ClGiGYVrki 166 (184)
...|..|.|+|++---. -.|-.|.|-|||++-
T Consensus 99 ~~~C~~C~G~G~~i~~~-------~~C~~C~G~G~v~~~ 130 (186)
T TIGR02642 99 SCKCPRCRGTGLIQRRQ-------RECDTCAGTGRFRPT 130 (186)
T ss_pred CCcCCCCCCeeEEecCC-------CCCCCCCCccEEeee
Confidence 78899999999863110 469999999999753
No 27
>PRK14291 chaperone protein DnaJ; Provisional
Probab=84.26 E-value=0.87 Score=40.29 Aligned_cols=14 Identities=43% Similarity=0.702 Sum_probs=10.9
Q ss_pred EeeeeccceeeEEE
Q 039969 152 CKCIPCLGIGYVQK 165 (184)
Q Consensus 152 ckCi~ClGiGYVrk 165 (184)
-.|..|.|-|||++
T Consensus 209 ~~C~~C~G~g~v~~ 222 (382)
T PRK14291 209 EPCSKCNGRGLVIK 222 (382)
T ss_pred cCCCCCCCCceEEe
Confidence 46888888888865
No 28
>PRK14283 chaperone protein DnaJ; Provisional
Probab=83.99 E-value=0.68 Score=40.79 Aligned_cols=36 Identities=33% Similarity=0.708 Sum_probs=20.1
Q ss_pred eecccccceeEEEeec-----------------CCcEEeEeeeeccceeeEEE
Q 039969 130 KCRSCQGSGYVSYYNK-----------------RGKEIICKCIPCLGIGYVQK 165 (184)
Q Consensus 130 KCrsCqGtG~Vsyy~k-----------------rGKe~ickCi~ClGiGYVrk 165 (184)
+|..|.|+|.|...+. +|+-..-.|..|.|-|+|+.
T Consensus 165 ~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~ 217 (378)
T PRK14283 165 TCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIVEKPCSNCHGKGVVRE 217 (378)
T ss_pred cCCCcCCccEEEEEEeccCceEEEEEECCCCCccceecCCCCCCCCCceeecc
Confidence 4777777777664442 22223345666666666644
No 29
>PRK14297 chaperone protein DnaJ; Provisional
Probab=83.20 E-value=0.81 Score=40.36 Aligned_cols=36 Identities=25% Similarity=0.497 Sum_probs=21.3
Q ss_pred ceecccccceeEEEeecCC--c-EEeEeeeeccceeeEE
Q 039969 129 GKCRSCQGSGYVSYYNKRG--K-EIICKCIPCLGIGYVQ 164 (184)
Q Consensus 129 gKCrsCqGtG~Vsyy~krG--K-e~ickCi~ClGiGYVr 164 (184)
..|..|.|+|.|...+.-+ . .....|..|.|-|++.
T Consensus 166 ~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~ 204 (380)
T PRK14297 166 KTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVI 204 (380)
T ss_pred ccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEc
Confidence 3466666777665443221 1 3456777777777764
No 30
>PRK14295 chaperone protein DnaJ; Provisional
Probab=82.86 E-value=1.1 Score=39.98 Aligned_cols=14 Identities=29% Similarity=0.700 Sum_probs=9.3
Q ss_pred EeeeeccceeeEEE
Q 039969 152 CKCIPCLGIGYVQK 165 (184)
Q Consensus 152 ckCi~ClGiGYVrk 165 (184)
-.|..|.|-|+|++
T Consensus 220 ~~C~~C~G~g~~~~ 233 (389)
T PRK14295 220 DPCLVCKGSGRAKS 233 (389)
T ss_pred cCCCCCCCCceEee
Confidence 45777777777754
No 31
>PRK10767 chaperone protein DnaJ; Provisional
Probab=82.58 E-value=1.1 Score=39.24 Aligned_cols=15 Identities=40% Similarity=0.673 Sum_probs=9.7
Q ss_pred eEeeeeccceeeEEE
Q 039969 151 ICKCIPCLGIGYVQK 165 (184)
Q Consensus 151 ickCi~ClGiGYVrk 165 (184)
.-.|-.|.|-|+|++
T Consensus 195 ~~~C~~C~G~g~v~~ 209 (371)
T PRK10767 195 KDPCKKCHGQGRVEK 209 (371)
T ss_pred CCCCCCCCCCceEee
Confidence 345777777777754
No 32
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=82.39 E-value=1.2 Score=40.64 Aligned_cols=14 Identities=36% Similarity=0.672 Sum_probs=10.1
Q ss_pred EeeeeccceeeEEE
Q 039969 152 CKCIPCLGIGYVQK 165 (184)
Q Consensus 152 ckCi~ClGiGYVrk 165 (184)
.+|-.|.|-|+|++
T Consensus 209 ~~C~~C~G~g~v~~ 222 (421)
T PTZ00037 209 KKCKNCSGKGVKKT 222 (421)
T ss_pred ccCCcCCCcceeee
Confidence 45777888888754
No 33
>PRK14287 chaperone protein DnaJ; Provisional
Probab=82.36 E-value=1.1 Score=39.69 Aligned_cols=40 Identities=28% Similarity=0.505 Sum_probs=29.1
Q ss_pred cceeeeEeceecccccceeEEEeecCCcEEeEeeeeccceeeEEEE
Q 039969 121 KEVVYEWTGKCRSCQGSGYVSYYNKRGKEIICKCIPCLGIGYVQKI 166 (184)
Q Consensus 121 k~vvYeWtgKCrsCqGtG~Vsyy~krGKe~ickCi~ClGiGYVrki 166 (184)
+++-|+-...|..|.|+|.-. ++ .+.+|-.|.|-|+|...
T Consensus 131 ~~i~~~r~~~C~~C~G~G~~~-----~~-~~~~C~~C~G~G~~~~~ 170 (371)
T PRK14287 131 TEIEIPREETCGTCHGSGAKP-----GT-KPETCSHCGGSGQLNVE 170 (371)
T ss_pred EEEEEeeeccCCCCCCcccCC-----CC-CCcccCCCCCEEEEEEE
Confidence 347788889999999999642 22 23568888888877544
No 34
>PRK14295 chaperone protein DnaJ; Provisional
Probab=81.87 E-value=1.6 Score=38.97 Aligned_cols=35 Identities=31% Similarity=0.654 Sum_probs=24.5
Q ss_pred ceecccccceeEEEeecCCcEEeEeeeeccceeeEE
Q 039969 129 GKCRSCQGSGYVSYYNKRGKEIICKCIPCLGIGYVQ 164 (184)
Q Consensus 129 gKCrsCqGtG~Vsyy~krGKe~ickCi~ClGiGYVr 164 (184)
..|..|.|+|.|..-. .+-.....|..|.|-|++.
T Consensus 184 ~~C~~C~G~G~~~~~~-g~~~~~~~C~~C~G~G~~~ 218 (389)
T PRK14295 184 RVCPTCSGTGQVSRNS-GGFSLSEPCPDCKGRGLIA 218 (389)
T ss_pred cCCCCCCCEeEEEEEe-cceEEEEecCCCcceeEEe
Confidence 4577888888776433 2334667899999999874
No 35
>PRK14290 chaperone protein DnaJ; Provisional
Probab=81.46 E-value=1.4 Score=38.73 Aligned_cols=15 Identities=40% Similarity=0.554 Sum_probs=11.1
Q ss_pred eEeeeeccceeeEEE
Q 039969 151 ICKCIPCLGIGYVQK 165 (184)
Q Consensus 151 ickCi~ClGiGYVrk 165 (184)
.-.|..|.|-|||++
T Consensus 205 ~~~C~~C~G~g~v~~ 219 (365)
T PRK14290 205 EEKCPRCNGTGTVVV 219 (365)
T ss_pred cCCCCCCCCceeEEE
Confidence 346888888888865
No 36
>PRK14298 chaperone protein DnaJ; Provisional
Probab=81.37 E-value=1.1 Score=39.73 Aligned_cols=34 Identities=32% Similarity=0.746 Sum_probs=18.4
Q ss_pred eecccccceeEEEeecC--Cc-EEeEeeeeccceeeE
Q 039969 130 KCRSCQGSGYVSYYNKR--GK-EIICKCIPCLGIGYV 163 (184)
Q Consensus 130 KCrsCqGtG~Vsyy~kr--GK-e~ickCi~ClGiGYV 163 (184)
+|..|.|+|.|..-+.- |. .....|..|.|.|++
T Consensus 160 ~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~ 196 (377)
T PRK14298 160 RCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQV 196 (377)
T ss_pred cCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCcc
Confidence 46666666655433221 11 345567777777765
No 37
>PRK14276 chaperone protein DnaJ; Provisional
Probab=81.28 E-value=1.1 Score=39.58 Aligned_cols=35 Identities=29% Similarity=0.608 Sum_probs=17.1
Q ss_pred eecccccceeEEEeecC--Cc-EEeEeeeeccceeeEE
Q 039969 130 KCRSCQGSGYVSYYNKR--GK-EIICKCIPCLGIGYVQ 164 (184)
Q Consensus 130 KCrsCqGtG~Vsyy~kr--GK-e~ickCi~ClGiGYVr 164 (184)
.|..|.|+|.|..-+.- |- .....|..|.|-|++.
T Consensus 165 ~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~ 202 (380)
T PRK14276 165 TCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEI 202 (380)
T ss_pred cCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCccc
Confidence 35555555555432211 11 2244666666666664
No 38
>PRK14280 chaperone protein DnaJ; Provisional
Probab=81.03 E-value=1.2 Score=39.26 Aligned_cols=35 Identities=31% Similarity=0.511 Sum_probs=22.1
Q ss_pred eecccccceeEEEeecCC--c-EEeEeeeeccceeeEE
Q 039969 130 KCRSCQGSGYVSYYNKRG--K-EIICKCIPCLGIGYVQ 164 (184)
Q Consensus 130 KCrsCqGtG~Vsyy~krG--K-e~ickCi~ClGiGYVr 164 (184)
.|..|.|+|.|...+..+ . .....|..|.|-|++.
T Consensus 162 ~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~ 199 (376)
T PRK14280 162 TCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEI 199 (376)
T ss_pred cCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCcee
Confidence 477777777765444322 1 2455788888888774
No 39
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=80.95 E-value=1 Score=41.38 Aligned_cols=17 Identities=41% Similarity=0.573 Sum_probs=13.3
Q ss_pred EeEeeeeccceeeEEEE
Q 039969 150 IICKCIPCLGIGYVQKI 166 (184)
Q Consensus 150 ~ickCi~ClGiGYVrki 166 (184)
+--+|-.|.|-|||++-
T Consensus 196 i~~pC~~C~G~G~v~~~ 212 (371)
T COG0484 196 IKDPCGKCKGKGRVKKK 212 (371)
T ss_pred CCCCCCCCCCCCeEeee
Confidence 34589999999998753
No 40
>PRK14278 chaperone protein DnaJ; Provisional
Probab=80.92 E-value=1.5 Score=38.94 Aligned_cols=35 Identities=31% Similarity=0.683 Sum_probs=18.4
Q ss_pred eecccccceeEEEeecC--Cc-EEeEeeeeccceeeEE
Q 039969 130 KCRSCQGSGYVSYYNKR--GK-EIICKCIPCLGIGYVQ 164 (184)
Q Consensus 130 KCrsCqGtG~Vsyy~kr--GK-e~ickCi~ClGiGYVr 164 (184)
+|..|.|+|.|.....- |. .....|..|.|.|++.
T Consensus 158 ~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~ 195 (378)
T PRK14278 158 TCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVI 195 (378)
T ss_pred ecCCccCceEEEEEEeccceeEEEEEECCCCCccceee
Confidence 46666666655443321 11 2344677777777653
No 41
>PRK14284 chaperone protein DnaJ; Provisional
Probab=80.89 E-value=1.4 Score=39.16 Aligned_cols=32 Identities=38% Similarity=0.709 Sum_probs=19.8
Q ss_pred eecccccceeEEEeecCCc-EEeEeeeeccceeeE
Q 039969 130 KCRSCQGSGYVSYYNKRGK-EIICKCIPCLGIGYV 163 (184)
Q Consensus 130 KCrsCqGtG~Vsyy~krGK-e~ickCi~ClGiGYV 163 (184)
.|..|.|+|.|..-. |- .....|..|.|-|++
T Consensus 177 ~C~~C~G~G~v~~~~--G~~~~~~~C~~C~G~G~~ 209 (391)
T PRK14284 177 VCDRCKGSGQVVQSR--GFFSMASTCPECGGEGRV 209 (391)
T ss_pred ecCccCCeeEEEEEe--ceEEEEEECCCCCCCCcc
Confidence 466667777665332 32 345677777777765
No 42
>PRK14291 chaperone protein DnaJ; Provisional
Probab=80.70 E-value=1.4 Score=39.03 Aligned_cols=33 Identities=33% Similarity=0.622 Sum_probs=23.8
Q ss_pred ceecccccceeEEEeecCCc-EEeEeeeeccceeeE
Q 039969 129 GKCRSCQGSGYVSYYNKRGK-EIICKCIPCLGIGYV 163 (184)
Q Consensus 129 gKCrsCqGtG~Vsyy~krGK-e~ickCi~ClGiGYV 163 (184)
..|..|+|+|.|.... |- .....|..|.|-|++
T Consensus 174 ~~C~~C~G~G~~~~~~--g~~~~~~~C~~C~G~G~~ 207 (382)
T PRK14291 174 KVCPTCGGSGEIYQRG--GFFRISQTCPTCGGEGVL 207 (382)
T ss_pred ccCCCCCCceEEEEec--ceEEEEecCCCCCCceEE
Confidence 3588888888876542 33 456789999999965
No 43
>PRK10767 chaperone protein DnaJ; Provisional
Probab=80.37 E-value=1.2 Score=39.00 Aligned_cols=33 Identities=30% Similarity=0.708 Sum_probs=25.0
Q ss_pred eecccccceeEEEeecCCc-EEeEeeeeccceeeEE
Q 039969 130 KCRSCQGSGYVSYYNKRGK-EIICKCIPCLGIGYVQ 164 (184)
Q Consensus 130 KCrsCqGtG~Vsyy~krGK-e~ickCi~ClGiGYVr 164 (184)
.|..|.|+|.|..-+ |- .....|..|.|-|++.
T Consensus 161 ~C~~C~G~G~~~~~~--g~~~~~~~C~~C~G~G~~~ 194 (371)
T PRK10767 161 TCPTCHGAGQVRMQQ--GFFTVQQTCPTCHGRGKII 194 (371)
T ss_pred cCCCCCCeeEEEEee--ceEEEEEeCCCCCCceeEC
Confidence 688888888876443 33 4667899999999874
No 44
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=79.95 E-value=1.6 Score=39.80 Aligned_cols=37 Identities=24% Similarity=0.563 Sum_probs=24.8
Q ss_pred ceecccccceeEEEeecCCc---EEeEeeeeccceeeEEE
Q 039969 129 GKCRSCQGSGYVSYYNKRGK---EIICKCIPCLGIGYVQK 165 (184)
Q Consensus 129 gKCrsCqGtG~Vsyy~krGK---e~ickCi~ClGiGYVrk 165 (184)
..|..|.|+|.+...+..|- .+...|..|.|.|++.+
T Consensus 167 ~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~ 206 (421)
T PTZ00037 167 VDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIP 206 (421)
T ss_pred ccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceecc
Confidence 35777777776655554443 35567888888888753
No 45
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=79.09 E-value=1.4 Score=38.18 Aligned_cols=35 Identities=26% Similarity=0.488 Sum_probs=17.7
Q ss_pred eecccccceeEEEeecCC--c-EEeEeeeeccceeeEE
Q 039969 130 KCRSCQGSGYVSYYNKRG--K-EIICKCIPCLGIGYVQ 164 (184)
Q Consensus 130 KCrsCqGtG~Vsyy~krG--K-e~ickCi~ClGiGYVr 164 (184)
.|..|.|+|.|..-+.-| . .....|..|.|-|++.
T Consensus 162 ~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~ 199 (354)
T TIGR02349 162 TCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKII 199 (354)
T ss_pred cCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceec
Confidence 466666666554332211 1 1234677777777653
No 46
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=79.07 E-value=1.1 Score=44.75 Aligned_cols=71 Identities=24% Similarity=0.494 Sum_probs=42.7
Q ss_pred cCCCCCCCCHH----HHhhhhcCCcccc--ccc--ceeeeE-eceecccccceeEEEeecCCcEEeEeeeeccceeeEEE
Q 039969 95 TYPDSSPVPRE----EIDKRLRCDPEVQ--DCK--EVVYEW-TGKCRSCQGSGYVSYYNKRGKEIICKCIPCLGIGYVQK 165 (184)
Q Consensus 95 tyPds~P~t~E----E~d~rl~CdPeve--dCk--~vvYeW-tgKCrsCqGtG~Vsyy~krGKe~ickCi~ClGiGYVrk 165 (184)
.-|+|.|.|-= +|.+.+.=.|+-. .=+ -..|.= .|+|..|+|.|+|..=-.---.+.-.|-.|.|-+|-+.
T Consensus 694 ~~~RS~~aTy~~~~d~iR~lfa~~~~a~~~g~~~~~FSfN~~~G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~~e 773 (924)
T TIGR00630 694 RTPRSNPATYTGVFDEIRELFAETPEAKARGYTPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVPCEVCKGKRYNRE 773 (924)
T ss_pred CCCCCchhhhhhhHHHHHHHHhcCCccccCCCChhhcCCCCCCCCCCCCccceEEEEEccCCCCcccCCCCcCCceeChH
Confidence 36777777754 4545554333321 111 122322 58999999999998322222346679999999998544
No 47
>PRK14288 chaperone protein DnaJ; Provisional
Probab=76.75 E-value=1.9 Score=38.14 Aligned_cols=39 Identities=28% Similarity=0.582 Sum_probs=28.6
Q ss_pred cceeeeEeceecccccceeEEEeecCCcEEeEeeeeccceeeEEEE
Q 039969 121 KEVVYEWTGKCRSCQGSGYVSYYNKRGKEIICKCIPCLGIGYVQKI 166 (184)
Q Consensus 121 k~vvYeWtgKCrsCqGtG~Vsyy~krGKe~ickCi~ClGiGYVrki 166 (184)
+++.|+-...|..|.|+|.-. + .+..|-.|.|-|.|+..
T Consensus 133 ~~i~~~r~~~C~~C~G~G~~~-----~--~~~~C~~C~G~G~~~~~ 171 (369)
T PRK14288 133 KTIKVQYQSVCESCDGTGAKD-----K--ALETCKQCNGQGQVFMR 171 (369)
T ss_pred EEEEEEeeccCCCCCCcccCC-----C--CCcCCCCCCCCcEEEEE
Confidence 457788888999999999532 2 34568888888877543
No 48
>PRK14289 chaperone protein DnaJ; Provisional
Probab=76.54 E-value=2 Score=37.93 Aligned_cols=34 Identities=32% Similarity=0.756 Sum_probs=17.6
Q ss_pred eecccccceeEEEeecC--Cc-EEeEeeeeccceeeE
Q 039969 130 KCRSCQGSGYVSYYNKR--GK-EIICKCIPCLGIGYV 163 (184)
Q Consensus 130 KCrsCqGtG~Vsyy~kr--GK-e~ickCi~ClGiGYV 163 (184)
.|..|.|+|.|...+.- |. .+...|..|.|-|++
T Consensus 173 ~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~ 209 (386)
T PRK14289 173 TCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKI 209 (386)
T ss_pred cCCCCcCeEEEEEEEecccceEEEEEecCCCCccccc
Confidence 35555555555443321 22 245566666666665
No 49
>PRK14293 chaperone protein DnaJ; Provisional
Probab=76.21 E-value=1.7 Score=38.35 Aligned_cols=19 Identities=32% Similarity=0.677 Sum_probs=15.6
Q ss_pred ceeeeEeceecccccceeE
Q 039969 122 EVVYEWTGKCRSCQGSGYV 140 (184)
Q Consensus 122 ~vvYeWtgKCrsCqGtG~V 140 (184)
++.|+-...|..|.|+|.-
T Consensus 137 ~i~~~r~~~C~~C~G~G~~ 155 (374)
T PRK14293 137 EIRIPHLETCETCRGSGAK 155 (374)
T ss_pred EEEeeccccCCCCCCcCCC
Confidence 4667778899999999963
No 50
>PRK14292 chaperone protein DnaJ; Provisional
Probab=75.19 E-value=2.4 Score=37.19 Aligned_cols=34 Identities=32% Similarity=0.706 Sum_probs=18.1
Q ss_pred eecccccceeEEEeecC--Cc-EEeEeeeeccceeeE
Q 039969 130 KCRSCQGSGYVSYYNKR--GK-EIICKCIPCLGIGYV 163 (184)
Q Consensus 130 KCrsCqGtG~Vsyy~kr--GK-e~ickCi~ClGiGYV 163 (184)
+|..|.|+|.|..-... |. .....|..|.|.|++
T Consensus 159 ~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~ 195 (371)
T PRK14292 159 TCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQI 195 (371)
T ss_pred cCCCCCCccEEEEEEeccCceEEEeeecCCCccccee
Confidence 35555555544422211 22 234578888888876
No 51
>PRK14294 chaperone protein DnaJ; Provisional
Probab=75.01 E-value=2.5 Score=37.13 Aligned_cols=33 Identities=39% Similarity=0.749 Sum_probs=23.5
Q ss_pred eecccccceeEEEeecCCc-EEeEeeeeccceeeEE
Q 039969 130 KCRSCQGSGYVSYYNKRGK-EIICKCIPCLGIGYVQ 164 (184)
Q Consensus 130 KCrsCqGtG~Vsyy~krGK-e~ickCi~ClGiGYVr 164 (184)
.|..|+|+|.|..-. |- .+...|..|.|-|++.
T Consensus 163 ~C~~C~G~G~~~~~~--G~~~~~~~C~~C~G~G~~~ 196 (366)
T PRK14294 163 TCPQCGGSGQVTQSQ--GFFSIRTTCPRCRGMGKVI 196 (366)
T ss_pred cCCCcCCeEEEEEEe--eeEEEEeeCCCCCCcCeec
Confidence 588888888776322 32 3567899999999873
No 52
>COG5204 SPT4 Transcription elongation factor SPT4 [Transcription]
Probab=73.78 E-value=3.1 Score=33.27 Aligned_cols=23 Identities=39% Similarity=0.857 Sum_probs=18.4
Q ss_pred cccccceeEE---EeecCCcEEeEeeeeccce
Q 039969 132 RSCQGSGYVS---YYNKRGKEIICKCIPCLGI 160 (184)
Q Consensus 132 rsCqGtG~Vs---yy~krGKe~ickCi~ClGi 160 (184)
|+|-|+|+|. -|+|.| |.+|.+|
T Consensus 10 RACl~Cgiv~t~n~F~~dG------CpNc~~l 35 (112)
T COG5204 10 RACLGCGIVKTLNGFRKDG------CPNCPML 35 (112)
T ss_pred hhhhhcceeeecccccccC------CCCCccc
Confidence 8999999998 677777 6666655
No 53
>PRK14296 chaperone protein DnaJ; Provisional
Probab=73.32 E-value=2.8 Score=37.23 Aligned_cols=41 Identities=32% Similarity=0.479 Sum_probs=27.9
Q ss_pred cceeeeEeceecccccceeEEEeecCCcEEeEeeeeccceeeEEEEe
Q 039969 121 KEVVYEWTGKCRSCQGSGYVSYYNKRGKEIICKCIPCLGIGYVQKIT 167 (184)
Q Consensus 121 k~vvYeWtgKCrsCqGtG~Vsyy~krGKe~ickCi~ClGiGYVrkiT 167 (184)
+++.|+-...|..|.|+|.-. ++ .+.+|-.|.|-|.|+..+
T Consensus 142 ~~i~~~~~~~C~~C~G~G~~~-----~~-~~~~C~~C~G~G~~~~~~ 182 (372)
T PRK14296 142 KIIELDLLTNCSKCFGSGAES-----NS-DIHICNNCHGTGEVLVQK 182 (372)
T ss_pred EEEEEeeeeccCCCCCCccCC-----CC-CCccCCCCCCCceEEEEE
Confidence 446778889999999999633 22 134577777777665543
No 54
>PRK14290 chaperone protein DnaJ; Provisional
Probab=72.92 E-value=3.6 Score=36.14 Aligned_cols=34 Identities=26% Similarity=0.657 Sum_probs=18.0
Q ss_pred eecccccceeEEEeecCCc---EEeEeeeeccceeeE
Q 039969 130 KCRSCQGSGYVSYYNKRGK---EIICKCIPCLGIGYV 163 (184)
Q Consensus 130 KCrsCqGtG~Vsyy~krGK---e~ickCi~ClGiGYV 163 (184)
+|..|.|+|.|...+.-|- .....|..|.|-|++
T Consensus 167 ~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~ 203 (365)
T PRK14290 167 TCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRI 203 (365)
T ss_pred cCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeE
Confidence 4555555555444433332 123567777777776
No 55
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=71.76 E-value=3.5 Score=32.14 Aligned_cols=33 Identities=30% Similarity=0.702 Sum_probs=26.1
Q ss_pred eeEeceecccccceeEEEeecCCcEEeEeeeeccceeeEEEEeec
Q 039969 125 YEWTGKCRSCQGSGYVSYYNKRGKEIICKCIPCLGIGYVQKITAR 169 (184)
Q Consensus 125 YeWtgKCrsCqGtG~Vsyy~krGKe~ickCi~ClGiGYVrkiT~R 169 (184)
.+....|..|+|+|.+ .|-.|.|-|++-+---|
T Consensus 72 ~q~~~~C~~C~G~Gk~------------~C~~C~G~G~~~~~~~~ 104 (111)
T PLN03165 72 EKEVSKCINCDGAGSL------------TCTTCQGSGIQPRYLDR 104 (111)
T ss_pred EEEEEECCCCCCccee------------eCCCCCCCEEEeeeecc
Confidence 4567899999999953 29999999998765444
No 56
>PRK14281 chaperone protein DnaJ; Provisional
Probab=71.43 E-value=3.2 Score=37.07 Aligned_cols=39 Identities=26% Similarity=0.590 Sum_probs=28.7
Q ss_pred ceeeeEeceecccccceeEEEeecCCcEEeEeeeeccceeeEEEEe
Q 039969 122 EVVYEWTGKCRSCQGSGYVSYYNKRGKEIICKCIPCLGIGYVQKIT 167 (184)
Q Consensus 122 ~vvYeWtgKCrsCqGtG~Vsyy~krGKe~ickCi~ClGiGYVrkiT 167 (184)
++-|.-...|..|+|+|.-. + .+..|-.|.|-|.|+.++
T Consensus 157 ~i~~~r~~~C~~C~G~G~~~-----~--~~~~C~~C~G~G~~~~~~ 195 (397)
T PRK14281 157 TLKIKKQVPCKECNGTGSKT-----G--ATETCPTCHGSGEVRQAS 195 (397)
T ss_pred EEEEEeeecCCCCCCcccCC-----C--CCccCCCCCCCcEEEEEE
Confidence 36677789999999999642 3 245788888888776543
No 57
>PRK14282 chaperone protein DnaJ; Provisional
Probab=70.48 E-value=2.9 Score=36.76 Aligned_cols=35 Identities=26% Similarity=0.586 Sum_probs=21.7
Q ss_pred eecccccceeEEEeecC--Cc-EEeEeeeeccceeeEE
Q 039969 130 KCRSCQGSGYVSYYNKR--GK-EIICKCIPCLGIGYVQ 164 (184)
Q Consensus 130 KCrsCqGtG~Vsyy~kr--GK-e~ickCi~ClGiGYVr 164 (184)
+|..|.|+|.|..-+.- |. .....|..|.|-|++.
T Consensus 171 ~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~ 208 (369)
T PRK14282 171 TCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIP 208 (369)
T ss_pred CCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeC
Confidence 57777777776543321 12 2355788888888763
No 58
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=69.50 E-value=2.6 Score=42.36 Aligned_cols=38 Identities=26% Similarity=0.611 Sum_probs=28.3
Q ss_pred eceecccccceeEEEeecCCcEEeEeeeeccceeeEEE
Q 039969 128 TGKCRSCQGSGYVSYYNKRGKEIICKCIPCLGIGYVQK 165 (184)
Q Consensus 128 tgKCrsCqGtG~Vsyy~krGKe~ickCi~ClGiGYVrk 165 (184)
.|+|..|+|.|+|..--.---.+...|-.|.|-+|-+.
T Consensus 738 ~G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~~e 775 (943)
T PRK00349 738 GGRCEACQGDGVIKIEMHFLPDVYVPCDVCKGKRYNRE 775 (943)
T ss_pred CCCCCcccccceEEEEeccCCCccccCccccCcccccc
Confidence 58999999999998211111236679999999999654
No 59
>PRK14301 chaperone protein DnaJ; Provisional
Probab=69.37 E-value=4 Score=36.17 Aligned_cols=39 Identities=28% Similarity=0.506 Sum_probs=25.9
Q ss_pred cceeeeEeceecccccceeEEEeecCCcEEeEeeeeccceeeEEE
Q 039969 121 KEVVYEWTGKCRSCQGSGYVSYYNKRGKEIICKCIPCLGIGYVQK 165 (184)
Q Consensus 121 k~vvYeWtgKCrsCqGtG~Vsyy~krGKe~ickCi~ClGiGYVrk 165 (184)
+++.++=...|..|+|+|... ++. +..|-.|.|-|.|++
T Consensus 137 k~i~~~r~~~C~~C~G~G~~~-----~~~-~~~C~~C~G~G~v~~ 175 (373)
T PRK14301 137 VTLRIPKNVTCDDCGGSGAAP-----GTS-PETCRHCGGSGQVRQ 175 (373)
T ss_pred EEEEeeecccCCCCCCcccCC-----CCC-CcccCCccCeeEEEE
Confidence 346677789999999999742 221 235666666666654
No 60
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=69.22 E-value=2.3 Score=45.74 Aligned_cols=37 Identities=24% Similarity=0.396 Sum_probs=28.6
Q ss_pred eceecccccceeEEEeecCCcEEeEeeeeccceeeEE
Q 039969 128 TGKCRSCQGSGYVSYYNKRGKEIICKCIPCLGIGYVQ 164 (184)
Q Consensus 128 tgKCrsCqGtG~Vsyy~krGKe~ickCi~ClGiGYVr 164 (184)
.|+|..|+|+|+++.=-.-=-.+--.|-.|.|-.|=+
T Consensus 1607 ~GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~~ 1643 (1809)
T PRK00635 1607 QGQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQP 1643 (1809)
T ss_pred CCCCCCCccCceEEEecccCCCcccCCCCCCCcCCCH
Confidence 6999999999999832222236777899999998844
No 61
>PRK14277 chaperone protein DnaJ; Provisional
Probab=69.16 E-value=3.9 Score=36.32 Aligned_cols=36 Identities=31% Similarity=0.606 Sum_probs=24.1
Q ss_pred ceecccccceeEEEeecC--Cc-EEeEeeeeccceeeEE
Q 039969 129 GKCRSCQGSGYVSYYNKR--GK-EIICKCIPCLGIGYVQ 164 (184)
Q Consensus 129 gKCrsCqGtG~Vsyy~kr--GK-e~ickCi~ClGiGYVr 164 (184)
.+|..|.|+|.|...+.- |. .....|..|.|-|++.
T Consensus 173 ~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~ 211 (386)
T PRK14277 173 VTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKII 211 (386)
T ss_pred ccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeec
Confidence 457888888877644432 22 3446899999999874
No 62
>PRK14279 chaperone protein DnaJ; Provisional
Probab=68.74 E-value=3.3 Score=36.95 Aligned_cols=34 Identities=32% Similarity=0.696 Sum_probs=24.9
Q ss_pred ceecccccceeEEEeecCCc-EEeEeeeeccceeeEE
Q 039969 129 GKCRSCQGSGYVSYYNKRGK-EIICKCIPCLGIGYVQ 164 (184)
Q Consensus 129 gKCrsCqGtG~Vsyy~krGK-e~ickCi~ClGiGYVr 164 (184)
..|..|.|+|.|..-. |. .....|..|.|.|++.
T Consensus 191 ~~C~~C~G~G~~~~~~--g~~~~~~~C~~C~G~G~~i 225 (392)
T PRK14279 191 KVCPTCNGSGVISRNQ--GAFGFSEPCTDCRGTGSII 225 (392)
T ss_pred CCCCCCcceEEEEEEe--cceEEEEecCCCCceeEEe
Confidence 4688888888876443 33 4667899999999874
No 63
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=68.61 E-value=3.5 Score=42.16 Aligned_cols=71 Identities=24% Similarity=0.524 Sum_probs=43.9
Q ss_pred cCCCCCCCCH----HHHhhhhcCCcccc--cccc--eeeeEe-ceecccccceeEEEeecCCcEEeEeeeeccceeeEEE
Q 039969 95 TYPDSSPVPR----EEIDKRLRCDPEVQ--DCKE--VVYEWT-GKCRSCQGSGYVSYYNKRGKEIICKCIPCLGIGYVQK 165 (184)
Q Consensus 95 tyPds~P~t~----EE~d~rl~CdPeve--dCk~--vvYeWt-gKCrsCqGtG~Vsyy~krGKe~ickCi~ClGiGYVrk 165 (184)
-.|+|.|+|= .+|...+.=.|+-- .=+. ..+.=. |+|-+|||-|+++-=-.-=-.|--.|-.|+|-.|=+.
T Consensus 688 RTpRSNPATYtg~Fd~IR~lFA~tpeAK~rGyk~grFSFNvkGGRCe~C~GdG~ikIeM~FLpdVyv~CevC~GkRYn~E 767 (935)
T COG0178 688 RTPRSNPATYTGVFDDIRELFAGTPEAKARGYKPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVPCEVCHGKRYNRE 767 (935)
T ss_pred CCCCCCccchhcchHHHHHHHhcChHHHHcCCCcccccccCCCcCCccccCCceEEEEeccCCCceeeCCCcCCcccccc
Confidence 4577777763 45655555444321 1111 233333 8999999999998322222246678999999998654
No 64
>PRK14286 chaperone protein DnaJ; Provisional
Probab=68.32 E-value=3.6 Score=36.42 Aligned_cols=34 Identities=32% Similarity=0.673 Sum_probs=25.3
Q ss_pred ceecccccceeEEEeecCCc-EEeEeeeeccceeeEE
Q 039969 129 GKCRSCQGSGYVSYYNKRGK-EIICKCIPCLGIGYVQ 164 (184)
Q Consensus 129 gKCrsCqGtG~Vsyy~krGK-e~ickCi~ClGiGYVr 164 (184)
..|..|.|+|.|..-. |. .....|..|.|.|++.
T Consensus 168 ~~C~~C~G~G~v~~~~--G~~~~~~~C~~C~G~G~~~ 202 (372)
T PRK14286 168 TTCPDCGGSGQIRRTQ--GFFSVATTCPTCRGKGTVI 202 (372)
T ss_pred ccCCCCcCeEEEEEEe--ceEEEEEeCCCCCceeeEe
Confidence 3588888888876543 33 4667899999999884
No 65
>PRK14285 chaperone protein DnaJ; Provisional
Probab=67.99 E-value=3.1 Score=36.70 Aligned_cols=33 Identities=33% Similarity=0.666 Sum_probs=23.4
Q ss_pred eecccccceeEEEeecCCc-EEeEeeeeccceeeEE
Q 039969 130 KCRSCQGSGYVSYYNKRGK-EIICKCIPCLGIGYVQ 164 (184)
Q Consensus 130 KCrsCqGtG~Vsyy~krGK-e~ickCi~ClGiGYVr 164 (184)
+|..|.|+|.|.... |- .+...|..|.|-|++.
T Consensus 165 ~C~~C~G~G~~~~~~--G~~~~~~~C~~C~G~G~~~ 198 (365)
T PRK14285 165 ICNMCNGSGRVMQGG--GFFRVTTTCPKCYGNGKII 198 (365)
T ss_pred cCCCccCceeEEecC--ceeEEeeecCCCCCccccc
Confidence 577777777776522 32 5677888999999874
No 66
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=65.28 E-value=7.7 Score=30.03 Aligned_cols=41 Identities=22% Similarity=0.382 Sum_probs=33.1
Q ss_pred CCHHHHhhhhcCCcccccccceeeeEeceecccccceeEEEeec
Q 039969 102 VPREEIDKRLRCDPEVQDCKEVVYEWTGKCRSCQGSGYVSYYNK 145 (184)
Q Consensus 102 ~t~EE~d~rl~CdPevedCk~vvYeWtgKCrsCqGtG~Vsyy~k 145 (184)
++.++|.+.++--.+|.+|+.+.-.-|++ +.|.|||.|.+.
T Consensus 46 ~te~~L~~~F~~~G~I~~v~i~~d~~tg~---~kGfaFV~F~~~ 86 (144)
T PLN03134 46 TDDASLRDAFAHFGDVVDAKVIVDRETGR---SRGFGFVNFNDE 86 (144)
T ss_pred CCHHHHHHHHhcCCCeEEEEEEecCCCCC---cceEEEEEECCH
Confidence 78999999997777899998877666766 458999999854
No 67
>PRK14300 chaperone protein DnaJ; Provisional
Probab=59.66 E-value=6.1 Score=34.95 Aligned_cols=34 Identities=29% Similarity=0.606 Sum_probs=24.4
Q ss_pred ceecccccceeEEEeecCCc-EEeEeeeeccceeeEE
Q 039969 129 GKCRSCQGSGYVSYYNKRGK-EIICKCIPCLGIGYVQ 164 (184)
Q Consensus 129 gKCrsCqGtG~Vsyy~krGK-e~ickCi~ClGiGYVr 164 (184)
.+|..|.|+|.|.... |- .....|..|.|.|++.
T Consensus 163 ~~C~~C~G~G~~~~~~--g~~~~~~~C~~C~G~G~~~ 197 (372)
T PRK14300 163 TTCDACSGVGATRMQQ--GFFTIEQACHKCQGNGQII 197 (372)
T ss_pred ccCCCccCeEEEEEee--ceEEEEEeCCCCCccceEe
Confidence 4678888888776432 33 3566899999999884
No 68
>PRK06921 hypothetical protein; Provisional
Probab=59.07 E-value=8.9 Score=32.34 Aligned_cols=29 Identities=28% Similarity=0.653 Sum_probs=18.2
Q ss_pred hhhhcCCcccccccceeeeEeceecccccceeEEE
Q 039969 108 DKRLRCDPEVQDCKEVVYEWTGKCRSCQGSGYVSY 142 (184)
Q Consensus 108 d~rl~CdPevedCk~vvYeWtgKCrsCqGtG~Vsy 142 (184)
.+.|....-..| +..|+ |.-|++||+|-.
T Consensus 18 ~~~l~~~g~~~~--~~~~~----Cp~C~dtG~i~~ 46 (266)
T PRK06921 18 RPSTTTKPEESD--AERYD----CPKCKDRGIIIY 46 (266)
T ss_pred HHHHHhCCCCCc--CCCCC----CCCCCCCEEEEe
Confidence 334444444444 44443 999999999854
No 69
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=56.17 E-value=9 Score=38.29 Aligned_cols=18 Identities=28% Similarity=0.484 Sum_probs=11.9
Q ss_pred EeEeeeeccceeeEEEEe
Q 039969 150 IICKCIPCLGIGYVQKIT 167 (184)
Q Consensus 150 ~ickCi~ClGiGYVrkiT 167 (184)
+.-.|--|.|.|+|-++-
T Consensus 67 v~~~c~~c~G~gkv~~c~ 84 (715)
T COG1107 67 VYDTCPECGGTGKVLTCD 84 (715)
T ss_pred EEeecccCCCceeEEeec
Confidence 444677788887776543
No 70
>PRK14283 chaperone protein DnaJ; Provisional
Probab=55.30 E-value=9.5 Score=33.75 Aligned_cols=39 Identities=31% Similarity=0.633 Sum_probs=24.9
Q ss_pred ceeeeEeceecccccceeEEEeecCCcEEeEeeeeccceeeEEEE
Q 039969 122 EVVYEWTGKCRSCQGSGYVSYYNKRGKEIICKCIPCLGIGYVQKI 166 (184)
Q Consensus 122 ~vvYeWtgKCrsCqGtG~Vsyy~krGKe~ickCi~ClGiGYVrki 166 (184)
++.|.=+-.|..|.|+|.-. +. .+.+|-.|.|-|.|.+.
T Consensus 140 ~i~~~r~~~C~~C~G~G~~~-----~~-~~~~C~~C~G~G~~~~~ 178 (378)
T PRK14283 140 DIKVRHTKKCPVCNGSRAEP-----GS-EVKTCPTCGGTGQVKQV 178 (378)
T ss_pred EEEeeeeccCCCCCccccCC-----CC-CCccCCCcCCccEEEEE
Confidence 36677788999999999422 22 23456666666655433
No 71
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=53.87 E-value=8.2 Score=35.60 Aligned_cols=16 Identities=31% Similarity=0.781 Sum_probs=8.2
Q ss_pred eeeeEeceecccccce
Q 039969 123 VVYEWTGKCRSCQGSG 138 (184)
Q Consensus 123 vvYeWtgKCrsCqGtG 138 (184)
+-|.-...|..|+|+|
T Consensus 137 i~~~~~~~C~~C~GsG 152 (371)
T COG0484 137 IRVTRSVTCSTCHGSG 152 (371)
T ss_pred EecceeeECCcCCCCC
Confidence 4444555555555554
No 72
>PRK06835 DNA replication protein DnaC; Validated
Probab=53.84 E-value=5.9 Score=34.85 Aligned_cols=36 Identities=31% Similarity=0.755 Sum_probs=22.7
Q ss_pred hhhcCCcccccccceeeeEeceecccccceeEEEeecCCcEEeEeee
Q 039969 109 KRLRCDPEVQDCKEVVYEWTGKCRSCQGSGYVSYYNKRGKEIICKCI 155 (184)
Q Consensus 109 ~rl~CdPevedCk~vvYeWtgKCrsCqGtG~Vsyy~krGKe~ickCi 155 (184)
+.|.-.+-.+|--++.| .|.-|++||+|. |+ .|.|.
T Consensus 83 ~lL~~~g~~~dyl~~~y----~Cp~C~dtG~i~-----~~--~C~C~ 118 (329)
T PRK06835 83 ELLVSNGYPPDYLEMKY----TCPKCKDTGFIN-----GK--KCSCY 118 (329)
T ss_pred HHHHHcCCChhhcCCCC----CCCCCCCCCCcC-----Cc--cccch
Confidence 33444444444445544 799999999992 43 57776
No 73
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=49.03 E-value=19 Score=22.67 Aligned_cols=28 Identities=32% Similarity=0.478 Sum_probs=18.9
Q ss_pred eecccccceeEEEeecCCcEEeEeeeeccce
Q 039969 130 KCRSCQGSGYVSYYNKRGKEIICKCIPCLGI 160 (184)
Q Consensus 130 KCrsCqGtG~Vsyy~krGKe~ickCi~ClGi 160 (184)
+|.+|+..=....+ +.-.|-.|..|.||
T Consensus 1 ~CP~C~~~l~~~~~---~~~~id~C~~C~G~ 28 (41)
T PF13453_consen 1 KCPRCGTELEPVRL---GDVEIDVCPSCGGI 28 (41)
T ss_pred CcCCCCcccceEEE---CCEEEEECCCCCeE
Confidence 58888774222233 44678889999997
No 74
>cd00272 Chemokine_CC Chemokine_CC: 1 of 4 subgroup designations based on the arrangement of the two N-terminal cysteine residues; includes a number of secreted growth factors and interferons involved in mitogenic, chemotactic, and inflammatory activity; some members (e.g. 2HCC) contain an additional disulfide bond which is thought to compensate for the highly conserved Trp missing in these; chemotatic for monocytes, macrophages, eosinophils, basophils, and T cells, but not neutrophils; exist as monomers and dimers, but are believed to be functional as monomers; found only in vertebrates and a few viruses; a subgroup of CC, identified by an N-terminal DCCL motif (Exodus-1, Exodus-2, and Exodus-3), has been shown to inhibit specific types of human cancer cell growth in a mouse model. See CDs: Chemokine (cd00169) for the general alignment of chemokines, or Chemokine_CXC (cd00273), Chemokine_C (cd00271), and Chemokine_CX3C (cd00274) for the additional chemokine subgroups, and Chemokine_C
Probab=45.96 E-value=25 Score=23.35 Aligned_cols=25 Identities=32% Similarity=0.667 Sum_probs=21.2
Q ss_pred eeeeEeceecccccceeEEEeecCCcEE
Q 039969 123 VVYEWTGKCRSCQGSGYVSYYNKRGKEI 150 (184)
Q Consensus 123 vvYeWtgKCrsCqGtG~Vsyy~krGKe~ 150 (184)
.-|+++.. +|.-.++| |++++||++
T Consensus 16 ~~y~~~~~--~C~~~aVI-f~tk~g~~i 40 (57)
T cd00272 16 KSYRRTSS--SCSKPAVI-FKTKRGREV 40 (57)
T ss_pred eEEEECCC--CCCCcEEE-EEeCCCCEE
Confidence 46899998 99999888 999999864
No 75
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=44.65 E-value=7.7 Score=35.41 Aligned_cols=36 Identities=31% Similarity=0.534 Sum_probs=25.0
Q ss_pred eeeeEeceecccccceeEEEeecCCcEEeEeeeeccceeeEEE
Q 039969 123 VVYEWTGKCRSCQGSGYVSYYNKRGKEIICKCIPCLGIGYVQK 165 (184)
Q Consensus 123 vvYeWtgKCrsCqGtG~Vsyy~krGKe~ickCi~ClGiGYVrk 165 (184)
++=++.-.|..|.|+|.+ ...--.|..|.|.+||+.
T Consensus 165 ~~qs~q~~C~~C~G~G~~-------~~~kd~C~~C~G~~~v~~ 200 (337)
T KOG0712|consen 165 MVQSPQLVCDSCNGSGET-------ISLKDRCKTCSGAKVVRE 200 (337)
T ss_pred ccccceeEeccCCCcccc-------ccccccCcccccchhhhh
Confidence 344677788888888875 112236889999988864
No 76
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=40.97 E-value=9.5 Score=33.45 Aligned_cols=12 Identities=42% Similarity=1.187 Sum_probs=10.7
Q ss_pred eecccccceeEE
Q 039969 130 KCRSCQGSGYVS 141 (184)
Q Consensus 130 KCrsCqGtG~Vs 141 (184)
.|..|||+|.+-
T Consensus 40 tCPTCqGtGrIP 51 (238)
T PF07092_consen 40 TCPTCQGTGRIP 51 (238)
T ss_pred cCCCCcCCccCC
Confidence 799999999875
No 77
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=39.26 E-value=19 Score=39.23 Aligned_cols=35 Identities=29% Similarity=0.724 Sum_probs=28.2
Q ss_pred eceecccccceeEEEeecCCcEEeEeeeeccceeeEEE
Q 039969 128 TGKCRSCQGSGYVSYYNKRGKEIICKCIPCLGIGYVQK 165 (184)
Q Consensus 128 tgKCrsCqGtG~Vsyy~krGKe~ickCi~ClGiGYVrk 165 (184)
.|+|..|||.|.+++.- -.+...|-.|.|-.|-+.
T Consensus 720 gG~C~~c~g~g~i~v~m---~~~~v~c~~C~GkRy~~e 754 (1809)
T PRK00635 720 LGACAECQGLGSITTTD---NRTSIPCPSCLGKRFLPQ 754 (1809)
T ss_pred CCCCCcceeeEEEEEec---CCceEECCccCCcccCHH
Confidence 68999999999998844 346678999999877544
No 78
>PF03589 Antiterm: Antitermination protein; InterPro: IPR003222 This entry consists of antitermination proteins found in bacteriophages, such as protein Q from phage lambda, and some bacterial homologues. Protein Q positively regulates expression of the phage late gene operon by binding to the bacterial host RNA polymerase (RNAP) and modifying it. The modified RNAP transcribes through termination sites that otherwise prevent expression of the regulated genes [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent
Probab=37.48 E-value=8.1 Score=28.97 Aligned_cols=37 Identities=30% Similarity=0.700 Sum_probs=28.0
Q ss_pred eceecccccceeEEEe---ecC-CcEEeEeeeeccceeeEE
Q 039969 128 TGKCRSCQGSGYVSYY---NKR-GKEIICKCIPCLGIGYVQ 164 (184)
Q Consensus 128 tgKCrsCqGtG~Vsyy---~kr-GKe~ickCi~ClGiGYVr 164 (184)
+..|++|-|.|-|--- ..+ |-.|.-.|--|.|.||-|
T Consensus 5 S~~c~~c~g~g~al~~~~s~~~~G~pvfk~c~rcgg~G~sr 45 (95)
T PF03589_consen 5 SDSCRRCAGDGAALDMKQSKAQFGVPVFKDCERCGGRGYSR 45 (95)
T ss_pred CCCcCccCCcceeccHHHhHhccCCchhhhhhhhcCCCCCC
Confidence 4579999999966422 223 666888999999999964
No 79
>PF10080 DUF2318: Predicted membrane protein (DUF2318); InterPro: IPR018758 This domain of unknown function is found in hypothetical bacterial membrane proteins with no known function.
Probab=36.87 E-value=33 Score=26.34 Aligned_cols=27 Identities=26% Similarity=0.466 Sum_probs=18.3
Q ss_pred eEEEee---cCCc--EEeEeeeeccceeeEEE
Q 039969 139 YVSYYN---KRGK--EIICKCIPCLGIGYVQK 165 (184)
Q Consensus 139 ~Vsyy~---krGK--e~ickCi~ClGiGYVrk 165 (184)
.|+|+- .-|+ -+..-|.+|.+-||+|+
T Consensus 18 ~vrff~i~~~dg~~~va~daCeiC~~~GY~q~ 49 (102)
T PF10080_consen 18 EVRFFAIKKPDGSYRVAFDACEICGPKGYYQE 49 (102)
T ss_pred EEEEEEEECCCCCEEEEEEeccccCCCceEEE
Confidence 455543 4444 36778888888888875
No 80
>PHA02779 E6 protein; Provisional
Probab=36.22 E-value=28 Score=28.06 Aligned_cols=34 Identities=18% Similarity=0.405 Sum_probs=25.7
Q ss_pred CCCCHHHHhhhhcCCcccccccceeeeEeceeccccc
Q 039969 100 SPVPREEIDKRLRCDPEVQDCKEVVYEWTGKCRSCQG 136 (184)
Q Consensus 100 ~P~t~EE~d~rl~CdPevedCk~vvYeWtgKCrsCqG 136 (184)
+|+++.|=++.+. ..+.=+.|--.|+|.|+.|..
T Consensus 109 k~L~~~EK~~~~~---~~~~F~~Vrg~WrG~C~~C~~ 142 (150)
T PHA02779 109 KPLCPVEKVNHIL---KKARFIKLNCSWKGRCLHCWT 142 (150)
T ss_pred CcCCHHHHHHHHH---cCCCEEEECCeEEEEcccccC
Confidence 8899888755543 444556688899999999964
No 81
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=35.67 E-value=17 Score=32.49 Aligned_cols=25 Identities=28% Similarity=0.635 Sum_probs=21.4
Q ss_pred ccccceeeeEeceecccccceeEEE
Q 039969 118 QDCKEVVYEWTGKCRSCQGSGYVSY 142 (184)
Q Consensus 118 edCk~vvYeWtgKCrsCqGtG~Vsy 142 (184)
++|-....+|.|||.+|.--|.+.=
T Consensus 4 ~~cg~~~~~~~g~cp~c~~w~~~~e 28 (372)
T cd01121 4 SECGYVSPKWLGKCPECGEWNTLVE 28 (372)
T ss_pred CCCCCCCCCccEECcCCCCceeeee
Confidence 4788899999999999998887653
No 82
>PRK11823 DNA repair protein RadA; Provisional
Probab=35.14 E-value=17 Score=33.00 Aligned_cols=26 Identities=23% Similarity=0.585 Sum_probs=22.2
Q ss_pred ccccceeeeEeceecccccceeEEEe
Q 039969 118 QDCKEVVYEWTGKCRSCQGSGYVSYY 143 (184)
Q Consensus 118 edCk~vvYeWtgKCrsCqGtG~Vsyy 143 (184)
++|-....+|-++|.+|..-|.+.=+
T Consensus 11 ~~Cg~~~~~~~g~Cp~C~~w~t~~e~ 36 (446)
T PRK11823 11 QECGAESPKWLGRCPECGAWNTLVEE 36 (446)
T ss_pred CcCCCCCcccCeeCcCCCCccceeee
Confidence 46888999999999999998887643
No 83
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=34.72 E-value=26 Score=29.46 Aligned_cols=12 Identities=42% Similarity=1.088 Sum_probs=8.9
Q ss_pred ceecccccceeE
Q 039969 129 GKCRSCQGSGYV 140 (184)
Q Consensus 129 gKCrsCqGtG~V 140 (184)
.-|..|.|+||.
T Consensus 251 ~gC~~C~~~G~~ 262 (264)
T cd01129 251 KGCEHCFGTGYK 262 (264)
T ss_pred CCchhhCCCCCC
Confidence 448888888873
No 84
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=34.60 E-value=29 Score=31.78 Aligned_cols=34 Identities=32% Similarity=0.623 Sum_probs=27.5
Q ss_pred eecccccceeEEEeecCCc----EEeEeeeeccceeeE
Q 039969 130 KCRSCQGSGYVSYYNKRGK----EIICKCIPCLGIGYV 163 (184)
Q Consensus 130 KCrsCqGtG~Vsyy~krGK----e~ickCi~ClGiGYV 163 (184)
+|+.|.|+|.-+--+.-|= -.-..|..|.|.|.+
T Consensus 145 ~C~~C~GsGv~~~~~~~gPg~~qs~q~~C~~C~G~G~~ 182 (337)
T KOG0712|consen 145 KCTTCRGSGVQTRTRQMGPGMVQSPQLVCDSCNGSGET 182 (337)
T ss_pred CCCCCCCCCceeEEEeccccccccceeEeccCCCcccc
Confidence 8999999998776665555 466789999999987
No 85
>PF03811 Zn_Tnp_IS1: InsA N-terminal domain; InterPro: IPR003220 Insertion elements are mobile elements in DNA, usually encoding proteins required for transposition, for example transposases. Protein InsA is absolutely required for transposition of insertion element 1. This entry represents a short zinc binding domain found in IS1 InsA family protein. It is found at the N terminus of the protein and may be a DNA-binding domain.; GO: 0006313 transposition, DNA-mediated
Probab=32.44 E-value=34 Score=21.94 Aligned_cols=29 Identities=21% Similarity=0.471 Sum_probs=18.5
Q ss_pred eceecccccce-eEEEeec-CCcEEeEeeeec
Q 039969 128 TGKCRSCQGSG-YVSYYNK-RGKEIICKCIPC 157 (184)
Q Consensus 128 tgKCrsCqGtG-~Vsyy~k-rGKe~ickCi~C 157 (184)
+-+|..||.+- ++++... .|+ ---.|..|
T Consensus 5 ~v~CP~C~s~~~v~k~G~~~~G~-qryrC~~C 35 (36)
T PF03811_consen 5 DVHCPRCQSTEGVKKNGKSPSGH-QRYRCKDC 35 (36)
T ss_pred eeeCCCCCCCCcceeCCCCCCCC-EeEecCcC
Confidence 56899999998 7775553 444 23344444
No 86
>smart00440 ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding motif in transcriptional elongation factor TFIIS and RNA polymerases.
Probab=30.17 E-value=57 Score=20.83 Aligned_cols=28 Identities=14% Similarity=0.602 Sum_probs=19.2
Q ss_pred eecccccceeEEEeecCCc------EEeEeeeecc
Q 039969 130 KCRSCQGSGYVSYYNKRGK------EIICKCIPCL 158 (184)
Q Consensus 130 KCrsCqGtG~Vsyy~krGK------e~ickCi~Cl 158 (184)
+|..|. ...+.||...-+ -+.-+|..|.
T Consensus 2 ~Cp~C~-~~~a~~~q~Q~RsaDE~mT~fy~C~~C~ 35 (40)
T smart00440 2 PCPKCG-NREATFFQLQTRSADEPMTVFYVCTKCG 35 (40)
T ss_pred cCCCCC-CCeEEEEEEcccCCCCCCeEEEEeCCCC
Confidence 689995 555666665333 3788898885
No 87
>PF09526 DUF2387: Probable metal-binding protein (DUF2387); InterPro: IPR012658 Members of this family are small proteins, about 70 residues in length, with a basic triplet near the N terminus and a probable metal-binding motif CPXCX(18)CXXC. Members are found in various proteobacteria.
Probab=28.71 E-value=63 Score=23.39 Aligned_cols=38 Identities=24% Similarity=0.730 Sum_probs=30.6
Q ss_pred eceecccccceeEEEeecCCcEEeEeeeeccceeeEEEEeec
Q 039969 128 TGKCRSCQGSGYVSYYNKRGKEIICKCIPCLGIGYVQKITAR 169 (184)
Q Consensus 128 tgKCrsCqGtG~Vsyy~krGKe~ickCi~ClGiGYVrkiT~R 169 (184)
-+.|..|+..=.+..|+..+.|.+ -|+.| ||.+..+.-
T Consensus 8 Ga~CP~C~~~D~i~~~~e~~ve~v-ECV~C---Gy~e~~~~~ 45 (71)
T PF09526_consen 8 GAVCPKCQAMDTIMMWRENGVEYV-ECVEC---GYTERQPDQ 45 (71)
T ss_pred CccCCCCcCccEEEEEEeCCceEE-EecCC---CCeeccCCc
Confidence 368999999999999999998765 57777 787766544
No 88
>PHA02775 E6; Provisional
Probab=27.42 E-value=44 Score=27.50 Aligned_cols=33 Identities=21% Similarity=0.173 Sum_probs=25.7
Q ss_pred CCCCHHHHhhhhcCCcccccccceeeeEeceecccc
Q 039969 100 SPVPREEIDKRLRCDPEVQDCKEVVYEWTGKCRSCQ 135 (184)
Q Consensus 100 ~P~t~EE~d~rl~CdPevedCk~vvYeWtgKCrsCq 135 (184)
+|++++|=++.+. +.+.=+.|--.|.|.|+.|.
T Consensus 124 k~L~~~EK~~~~~---~~~~F~~VRg~WRG~C~~C~ 156 (160)
T PHA02775 124 ALLQSVEKDFIAR---EDLSVHFIGGILRGLCTHCM 156 (160)
T ss_pred CcCCHHHHHHHHH---cCCCEEEEcCeEEEEchhhh
Confidence 8999988765554 34556668889999999994
No 89
>PF14380 WAK_assoc: Wall-associated receptor kinase C-terminal
Probab=27.23 E-value=62 Score=23.17 Aligned_cols=45 Identities=29% Similarity=0.705 Sum_probs=35.4
Q ss_pred CHHHHhhhhcCCcccccccceeeeEe---ceecccccceeEEEeecCCcEEeEeee
Q 039969 103 PREEIDKRLRCDPEVQDCKEVVYEWT---GKCRSCQGSGYVSYYNKRGKEIICKCI 155 (184)
Q Consensus 103 t~EE~d~rl~CdPevedCk~vvYeWt---gKCrsCqGtG~Vsyy~krGKe~ickCi 155 (184)
+.+.+.+.|+ +-...+|. +.|..|..+|=.=-|+....+..|-|-
T Consensus 44 ~~~~~~~~L~--------~GF~L~w~~~~~~C~~C~~SgG~Cgy~~~~~~f~C~C~ 91 (94)
T PF14380_consen 44 SSGNYEEVLK--------KGFELEWNADSGDCRECEASGGRCGYDSNSEQFTCFCS 91 (94)
T ss_pred chhHHHHHHh--------cCcEEEEeCCCCcCcChhcCCCEeCCCCCCceEEEECC
Confidence 5566666665 34667888 999999999988888888888988874
No 90
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=26.94 E-value=25 Score=32.47 Aligned_cols=35 Identities=29% Similarity=0.454 Sum_probs=27.5
Q ss_pred cceeEEEeecCCcEEeEeeeeccceeeEEEEeecCChh
Q 039969 136 GSGYVSYYNKRGKEIICKCIPCLGIGYVQKITARKDIE 173 (184)
Q Consensus 136 GtG~Vsyy~krGKe~ickCi~ClGiGYVrkiT~R~d~d 173 (184)
-+|+|.||+..|.-+++.++. =.-|.||..|.-.-
T Consensus 87 ssG~vrfyte~G~LL~~Q~~h---~~pV~~ik~~~~~~ 121 (415)
T PF14655_consen 87 SSGYVRFYTENGVLLLSQLLH---EEPVLKIKCRSTKI 121 (415)
T ss_pred cccEEEEEeccchHHHHHhcC---ccceEEEEecccCC
Confidence 479999999999988777653 56788888876543
No 91
>PF06807 Clp1: Pre-mRNA cleavage complex II protein Clp1; InterPro: IPR010655 This entry consists of several pre-mRNA cleavage complex II Clp1 (or HeaB) proteins. Six different protein factors are required in vitro for 3' end formation of mammalian pre-mRNAs by endonucleolytic cleavage and polyadenylation. Clp1 is a subunit of cleavage complex IIA, which is required for cleavage, but not for polyadenylation of pre-mRNA []. This entry also includes nucleolar proteins [].; PDB: 2NPI_A.
Probab=26.61 E-value=37 Score=26.04 Aligned_cols=17 Identities=35% Similarity=0.682 Sum_probs=12.5
Q ss_pred eeeccceeeEEEEeecC
Q 039969 154 CIPCLGIGYVQKITARK 170 (184)
Q Consensus 154 Ci~ClGiGYVrkiT~R~ 170 (184)
+..|+|+|+||.|-..+
T Consensus 149 ~~~~~G~~~Vr~VD~~~ 165 (195)
T PF06807_consen 149 DSNCLGFGIVRSVDEEK 165 (195)
T ss_dssp TS-EEEEEEEEEEETTT
T ss_pred cCeeEEEEEEEEEECCC
Confidence 45799999999985443
No 92
>PF05720 Dicty_CAD: Cell-cell adhesion domain; InterPro: IPR008601 This family is based on a group of Dictyostelium discoideum (Slime mould) proteins that are essential in early development []. P16642 from SWISSPROT and P16643 from SWISSPROT are located on the cell surface and mediate cell-cell adhesion.; GO: 0007155 cell adhesion
Probab=26.40 E-value=38 Score=25.78 Aligned_cols=22 Identities=32% Similarity=0.656 Sum_probs=19.5
Q ss_pred ccCcccccCCCCCccCCccCCC
Q 039969 77 RNRESYLTDDSEPLPLPMTYPD 98 (184)
Q Consensus 77 r~~Esyl~dd~~~LPLPmtyPd 98 (184)
...||-+....-+||.||-||-
T Consensus 4 ~~GeStI~G~a~~lP~p~i~Pp 25 (82)
T PF05720_consen 4 DDGESTISGKAIPLPTPRIFPP 25 (82)
T ss_pred cCCeeEeecccccCCCCccCCC
Confidence 4678999999999999999995
No 93
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=25.95 E-value=63 Score=23.86 Aligned_cols=29 Identities=28% Similarity=0.644 Sum_probs=18.4
Q ss_pred eeEeceeccc-------ccceeEEEeecCCcEEeEe
Q 039969 125 YEWTGKCRSC-------QGSGYVSYYNKRGKEIICK 153 (184)
Q Consensus 125 YeWtgKCrsC-------qGtG~Vsyy~krGKe~ick 153 (184)
|+-.+.|.-| +.+|-|.||=.+|.++|+|
T Consensus 27 ~~~~a~CPdC~~~Le~LkACGAvdYFC~~c~gLiSK 62 (70)
T PF07191_consen 27 YKKEAFCPDCGQPLEVLKACGAVDYFCNHCHGLISK 62 (70)
T ss_dssp EEEEEE-TTT-SB-EEEEETTEEEEE-TTTT-EE-T
T ss_pred ceecccCCCcccHHHHHHHhcccceeeccCCceeec
Confidence 5555566665 4678999999998888875
No 94
>PF08920 SF3b1: Splicing factor 3B subunit 1; InterPro: IPR015016 This group of proteins consists of several eukaryotic splicing factor 3B subunit 1 proteins, which associate with p14 through a C terminus beta-strand that interacts with beta-3 of the p14 RNA recognition motif (RRM) beta-sheet, which is in turn connected to an alpha-helix by a loop that makes extensive contacts with both the shorter C-terminal helix and RRM of p14. This subunit is required for 'A' splicing complex assembly (formed by the stable binding of U2 snRNP to the branchpoint sequence in pre-mRNA) and 'E' splicing complex assembly []. ; PDB: 2FHO_A 3LQV_P 2PEH_D 2F9J_P 2F9D_Q.
Probab=25.80 E-value=38 Score=27.46 Aligned_cols=14 Identities=36% Similarity=0.624 Sum_probs=10.6
Q ss_pred CCCCCCHHHHhhhh
Q 039969 98 DSSPVPREEIDKRL 111 (184)
Q Consensus 98 ds~P~t~EE~d~rl 111 (184)
+.+|+|.||+|.+|
T Consensus 83 RNrpLTDEELD~mL 96 (144)
T PF08920_consen 83 RNRPLTDEELDAML 96 (144)
T ss_dssp CTS-S-HHHHHHTS
T ss_pred ccCcCCHHHHHHhC
Confidence 45889999999999
No 95
>COG1326 Uncharacterized archaeal Zn-finger protein [General function prediction only]
Probab=24.77 E-value=31 Score=30.02 Aligned_cols=39 Identities=36% Similarity=0.652 Sum_probs=28.7
Q ss_pred ceecccccceeE--EEeecCCcEEeEeeeeccceeeEE--EEeecCC
Q 039969 129 GKCRSCQGSGYV--SYYNKRGKEIICKCIPCLGIGYVQ--KITARKD 171 (184)
Q Consensus 129 gKCrsCqGtG~V--syy~krGKe~ickCi~ClGiGYVr--kiT~R~d 171 (184)
..|.+|- ...| ---+.+|.+.+-.|..| |||. .|++.+.
T Consensus 7 ~~Cp~Cg-~eev~hEVik~~g~~~lvrC~eC---G~V~~~~i~~~k~ 49 (201)
T COG1326 7 IECPSCG-SEEVSHEVIKERGREPLVRCEEC---GTVHPAIIKTPKP 49 (201)
T ss_pred EECCCCC-cchhhHHHHHhcCCceEEEccCC---CcEeeceeecccc
Confidence 4688887 7777 46677899999999999 6776 5555443
No 96
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=24.34 E-value=30 Score=31.71 Aligned_cols=25 Identities=28% Similarity=0.716 Sum_probs=21.6
Q ss_pred ccccceeeeEeceecccccceeEEE
Q 039969 118 QDCKEVVYEWTGKCRSCQGSGYVSY 142 (184)
Q Consensus 118 edCk~vvYeWtgKCrsCqGtG~Vsy 142 (184)
++|--...+|.++|.+|.--+.+.-
T Consensus 11 ~~Cg~~~~~~~g~Cp~C~~w~t~~~ 35 (454)
T TIGR00416 11 QHCGADSPKWQGKCPACHAWNTITE 35 (454)
T ss_pred CcCCCCCccccEECcCCCCccccch
Confidence 4688899999999999998887765
No 97
>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family. Restriction alleviation proteins provide a countermeasure to host cell restriction enzyme defense against foreign DNA such as phage or plasmids. This family consists of homologs to the phage antirestriction protein Lar, and most members belong to phage genomes or prophage regions of bacterial genomes.
Probab=22.98 E-value=71 Score=21.05 Aligned_cols=33 Identities=21% Similarity=0.456 Sum_probs=20.4
Q ss_pred eeccccccee-EE--EeecCCcEEeEeeeeccceeeE
Q 039969 130 KCRSCQGSGY-VS--YYNKRGKEIICKCIPCLGIGYV 163 (184)
Q Consensus 130 KCrsCqGtG~-Vs--yy~krGKe~ickCi~ClGiGYV 163 (184)
-|.-|.|... +. +..+.+..+. +|-.|...|=+
T Consensus 3 PCPfCGg~~~~~~~~~~~~~~~~~~-~C~~Cga~~~~ 38 (53)
T TIGR03655 3 PCPFCGGADVYLRRGFDPLDLSHYF-ECSTCGASGPV 38 (53)
T ss_pred CCCCCCCcceeeEeccCCCCCEEEE-ECCCCCCCccc
Confidence 3777877776 54 4444555554 77777766543
No 98
>COG0267 RpmG Ribosomal protein L33 [Translation, ribosomal structure and biogenesis]
Probab=21.96 E-value=82 Score=21.93 Aligned_cols=28 Identities=25% Similarity=0.457 Sum_probs=23.2
Q ss_pred EEeEeeeeccceeeEEEEeecCChhhhh
Q 039969 149 EIICKCIPCLGIGYVQKITARKDIEVME 176 (184)
Q Consensus 149 e~ickCi~ClGiGYVrkiT~R~d~d~me 176 (184)
-++-.|-.|.|.-|+.....|..+|-||
T Consensus 5 kI~L~ct~c~g~nY~t~kN~r~~~~rLe 32 (50)
T COG0267 5 KIKLACTACTSRNYTTTKNKRNKPERLE 32 (50)
T ss_pred eEEEEEeccCCeeEEEeeccCCCcceEE
Confidence 4678899999999999888888887665
No 99
>PRK12336 translation initiation factor IF-2 subunit beta; Provisional
Probab=20.68 E-value=80 Score=26.19 Aligned_cols=39 Identities=21% Similarity=0.329 Sum_probs=29.6
Q ss_pred eecccccceeEEEeecCCcEEeEeeeeccceeeEEEEeecC
Q 039969 130 KCRSCQGSGYVSYYNKRGKEIICKCIPCLGIGYVQKITARK 170 (184)
Q Consensus 130 KCrsCqGtG~Vsyy~krGKe~ickCi~ClGiGYVrkiT~R~ 170 (184)
.|..|.-.-+- +.|.++-...+|-.|...+=|+++.++.
T Consensus 100 ~C~~C~~pdT~--l~k~~~~~~l~C~aCGa~~~v~~~~~~~ 138 (201)
T PRK12336 100 ICSECGLPDTR--LVKEDRVLMLRCDACGAHRPVKKRKASS 138 (201)
T ss_pred ECCCCCCCCcE--EEEcCCeEEEEcccCCCCcccccccccc
Confidence 47777765532 3455777788999999999999988887
No 100
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=20.51 E-value=1.2e+02 Score=19.20 Aligned_cols=34 Identities=24% Similarity=0.500 Sum_probs=19.6
Q ss_pred eeeeEeceecccccceeEEEeecCCcEEeEeeeeccce
Q 039969 123 VVYEWTGKCRSCQGSGYVSYYNKRGKEIICKCIPCLGI 160 (184)
Q Consensus 123 vvYeWtgKCrsCqGtG~Vsyy~krGKe~ickCi~ClGi 160 (184)
++|++ +|..|.-.=.+-..-.. +..-.|..|...
T Consensus 2 P~Yey--~C~~Cg~~fe~~~~~~~--~~~~~CP~Cg~~ 35 (52)
T TIGR02605 2 PIYEY--RCTACGHRFEVLQKMSD--DPLATCPECGGE 35 (52)
T ss_pred CCEEE--EeCCCCCEeEEEEecCC--CCCCCCCCCCCC
Confidence 45666 78888754444322122 344569999873
No 101
>cd00271 Chemokine_C Chemokine_C, C or lymphotactin subgroup, 1 of 4 subgroup designations of chemokines based on the arrangement of two N-terminal, conserved cysteine residues. Most of the known chemokines (cd00169) belong to either the CC (cd00272) or CXC (cd00273) subclass. The two other subclasses each have a single known member: fractalkine for the CX3C (cd00274) class and lymphotactin for the C (cd00271) class. Chemokine_Cs differ structurally since they contain only one of the two disulfide bridges that are conserved in all other chemokines and they possess a unique C-terminal extension, which is required for biological activity and thought to play a role in receptor binding. Lymphotactin, a mediator of mucosal immunity, has been found to chemoattract neutrophils and B cells through the XCR1 receptor and thought to be a factor in acute allograft rejection and inflammatory bowel disease.
Probab=20.46 E-value=1.1e+02 Score=21.88 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=16.5
Q ss_pred eeeeEeceecccccceeEEEeecCCcEE
Q 039969 123 VVYEWTGKCRSCQGSGYVSYYNKRGKEI 150 (184)
Q Consensus 123 vvYeWtgKCrsCqGtG~Vsyy~krGKe~ 150 (184)
..|+++. |.-.++| |++|+||++
T Consensus 25 ~sY~~q~----~~~~AVI-F~Tkkgr~i 47 (72)
T cd00271 25 KTYTIKE----GSVRAVI-FITKRGLKI 47 (72)
T ss_pred cEEEECC----CCCCeEE-EEecCCCEE
Confidence 5688873 4446655 999999985
No 102
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=20.32 E-value=57 Score=28.59 Aligned_cols=53 Identities=21% Similarity=0.223 Sum_probs=36.3
Q ss_pred CCccCCccCCCC-CCCCHHHHhhhhcCCcccccccceeeeEe-ceecccccceeEEEeecCCc-EEeEeeeecc
Q 039969 88 EPLPLPMTYPDS-SPVPREEIDKRLRCDPEVQDCKEVVYEWT-GKCRSCQGSGYVSYYNKRGK-EIICKCIPCL 158 (184)
Q Consensus 88 ~~LPLPmtyPds-~P~t~EE~d~rl~CdPevedCk~vvYeWt-gKCrsCqGtG~Vsyy~krGK-e~ickCi~Cl 158 (184)
+|+=+||+=|.+ .-.++||+ |+|| |||--.-|+-+-..-. +|| -.+.+|-+++
T Consensus 134 ~PIIFaLSNPt~~aE~tpe~a-----------------~~~t~G~ai~AtGspf~pv~~-~g~~~~~~Q~NN~~ 189 (254)
T cd00762 134 RPVIFALSNPTSKAECTAEEA-----------------YTATEGRAIFASGSPFHPVEL-NGGTYKPGQGNNLY 189 (254)
T ss_pred CCEEEECCCcCCccccCHHHH-----------------HhhcCCCEEEEECCCCCCccc-CCceeeccccccee
Confidence 677777777766 23466665 9999 9998777775443322 455 5788888887
No 103
>PRK14873 primosome assembly protein PriA; Provisional
Probab=20.32 E-value=64 Score=31.43 Aligned_cols=19 Identities=21% Similarity=0.585 Sum_probs=13.2
Q ss_pred eEeceecccccceeEEEeecC
Q 039969 126 EWTGKCRSCQGSGYVSYYNKR 146 (184)
Q Consensus 126 eWtgKCrsCqGtG~Vsyy~kr 146 (184)
.|..+|..|++. ..|+.++
T Consensus 390 g~~~~C~~C~~~--L~~h~~~ 408 (665)
T PRK14873 390 RTPARCRHCTGP--LGLPSAG 408 (665)
T ss_pred cCeeECCCCCCc--eeEecCC
Confidence 478899999865 4455543
No 104
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=20.17 E-value=62 Score=29.98 Aligned_cols=20 Identities=25% Similarity=0.569 Sum_probs=14.7
Q ss_pred eEeceecccccceeEEEeecCC
Q 039969 126 EWTGKCRSCQGSGYVSYYNKRG 147 (184)
Q Consensus 126 eWtgKCrsCqGtG~Vsyy~krG 147 (184)
.|..+|..|.+ ...|+.+.+
T Consensus 220 g~~~~C~~C~~--~l~~h~~~~ 239 (505)
T TIGR00595 220 GYILCCPNCDV--SLTYHKKEG 239 (505)
T ss_pred cCccCCCCCCC--ceEEecCCC
Confidence 48889999976 466776554
Done!