BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039972
(169 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9M041|BH140_ARATH Transcription factor bHLH140 OS=Arabidopsis thaliana GN=BHLH140
PE=4 SV=1
Length = 912
Score = 122 bits (306), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 63/108 (58%), Positives = 76/108 (70%), Gaps = 9/108 (8%)
Query: 11 SGKGNKKKKSSGSKSNPMKLSTDPQSVAARQRRHRISDRFKILQSMVPGGTKMDTASMLD 70
S GN K+ S S LSTDPQSVAAR RRHRISDRFKILQSMVPGG KMDT SMLD
Sbjct: 29 SETGNTKRSRSTST-----LSTDPQSVAARDRRHRISDRFKILQSMVPGGAKMDTVSMLD 83
Query: 71 EAINYVKFLKAVIWFHENIINFADHHHHEHDPPVAFGQLPGSFPYSPE 118
EAI+YVKFLKA IW+H+N++ F + +H+ + PG+ + P+
Sbjct: 84 EAISYVKFLKAQIWYHQNMLLFIN----DHETTSSCTYSPGAGEFGPK 127
>sp|Q7XAQ6|LAX_ORYSJ Transcription factor LAX PANICLE OS=Oryza sativa subsp. japonica
GN=LAX PE=1 SV=1
Length = 215
Score = 102 bits (253), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 44/62 (70%), Positives = 56/62 (90%)
Query: 29 KLSTDPQSVAARQRRHRISDRFKILQSMVPGGTKMDTASMLDEAINYVKFLKAVIWFHEN 88
KLSTDPQSVAAR+RRHRISDRF++L+S+VPGG+KMDT SML++AI+YVKFLKA + H+
Sbjct: 39 KLSTDPQSVAARERRHRISDRFRVLRSLVPGGSKMDTVSMLEQAIHYVKFLKAQVTLHQA 98
Query: 89 II 90
+
Sbjct: 99 AL 100
>sp|Q8S3D2|BH087_ARATH Transcription factor bHLH87 OS=Arabidopsis thaliana GN=BHLH87 PE=2
SV=1
Length = 373
Score = 100 bits (248), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 49/91 (53%), Positives = 65/91 (71%), Gaps = 6/91 (6%)
Query: 24 KSNPMKLSTDPQSVAARQRRHRISDRFKILQSMVPGGTKMDTASMLDEAINYVKFLKAVI 83
K +K+STDPQ+VAARQRR RIS++ ++LQ++VPGGTKMDTASMLDEA NY+KFL+A +
Sbjct: 269 KRKNVKISTDPQTVAARQRRERISEKIRVLQTLVPGGTKMDTASMLDEAANYLKFLRAQV 328
Query: 84 WFHENIINFADHHHHEHDPPVAFGQLPGSFP 114
EN+ D + ++F P SFP
Sbjct: 329 KALENLRPKLDQTN------LSFSSAPTSFP 353
>sp|O81313|IND_ARATH Transcription factor IND OS=Arabidopsis thaliana GN=IND PE=1 SV=3
Length = 198
Score = 80.9 bits (198), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 35/53 (66%), Positives = 45/53 (84%)
Query: 28 MKLSTDPQSVAARQRRHRISDRFKILQSMVPGGTKMDTASMLDEAINYVKFLK 80
+++S DPQ+V AR+RR RIS++ +IL+ +VPGG KMDTASMLDEAI Y KFLK
Sbjct: 116 VRISDDPQTVVARRRRERISEKIRILKRIVPGGAKMDTASMLDEAIRYTKFLK 168
>sp|Q9C707|BH083_ARATH Transcription factor bHLH83 OS=Arabidopsis thaliana GN=BHLH83 PE=2
SV=1
Length = 298
Score = 76.3 bits (186), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/71 (53%), Positives = 50/71 (70%), Gaps = 4/71 (5%)
Query: 17 KKKSSG----SKSNPMKLSTDPQSVAARQRRHRISDRFKILQSMVPGGTKMDTASMLDEA 72
KK SSG +K P DPQS+AA+ RR RIS+R KILQ +VP GTK+D +ML++A
Sbjct: 184 KKLSSGVTGKTKPKPTTSPKDPQSLAAKNRRERISERLKILQELVPNGTKVDLVTMLEKA 243
Query: 73 INYVKFLKAVI 83
I+YVKFL+ +
Sbjct: 244 ISYVKFLQVQV 254
>sp|Q3E7L7|BH139_ARATH Transcription factor bHLH139 OS=Arabidopsis thaliana GN=BHLH139
PE=4 SV=1
Length = 223
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 69/118 (58%), Gaps = 23/118 (19%)
Query: 3 YVNAKTLASGKGNKKKKSSGSKSNPMK-----------LSTDPQSVAARQRRHRISDRFK 51
+ + ++L+S + +K+ G SN K +++DPQS+ AR+RR RI+DR K
Sbjct: 100 WRDGQSLSSYNSSDDEKALGLVSNTSKSLKRKAKANRGIASDPQSLYARKRRERINDRLK 159
Query: 52 ILQSMVPGGTKMDTASMLDEAINYVKFLKAVI--------WFH----ENIINFADHHH 97
LQS+VP GTK+D ++ML++A++YVKFL+ I W + N +N HH+
Sbjct: 160 TLQSLVPNGTKVDISTMLEDAVHYVKFLQLQIKLLSSEDLWMYAPLAHNGLNMGLHHN 217
>sp|Q84WK0|BH085_ARATH Transcription factor bHLH85 OS=Arabidopsis thaliana GN=BHLH85 PE=2
SV=1
Length = 352
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 31/53 (58%), Positives = 46/53 (86%)
Query: 31 STDPQSVAARQRRHRISDRFKILQSMVPGGTKMDTASMLDEAINYVKFLKAVI 83
+TDPQS+ AR+RR RI++R +ILQ++VP GTK+D ++ML+EA++YVKFL+ I
Sbjct: 273 ATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVHYVKFLQLQI 325
>sp|Q7XHI9|BH084_ARATH Transcription factor bHLH84 OS=Arabidopsis thaliana GN=BHLH84 PE=2
SV=1
Length = 328
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 31/53 (58%), Positives = 44/53 (83%)
Query: 31 STDPQSVAARQRRHRISDRFKILQSMVPGGTKMDTASMLDEAINYVKFLKAVI 83
+TDPQS+ AR+RR RI++R +ILQ +VP GTK+D ++ML+EA+ YVKFL+ I
Sbjct: 244 ATDPQSLYARKRRERINERLRILQHLVPNGTKVDISTMLEEAVQYVKFLQLQI 296
>sp|Q9FJ00|BH086_ARATH Putative transcription factor bHLH086 OS=Arabidopsis thaliana
GN=BHLH86 PE=4 SV=2
Length = 307
Score = 73.2 bits (178), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 37/71 (52%), Positives = 51/71 (71%), Gaps = 4/71 (5%)
Query: 17 KKKSSGS--KSNPMKLST--DPQSVAARQRRHRISDRFKILQSMVPGGTKMDTASMLDEA 72
KK SSG+ K P ++ DPQS+AA+ RR RIS+R K+LQ +VP GTK+D +ML++A
Sbjct: 190 KKPSSGTNGKIKPKATTSPKDPQSLAAKNRRERISERLKVLQELVPNGTKVDLVTMLEKA 249
Query: 73 INYVKFLKAVI 83
I YVKFL+ +
Sbjct: 250 IGYVKFLQVQV 260
>sp|Q8LEG1|BH054_ARATH Transcription factor bHLH54 OS=Arabidopsis thaliana GN=BHLH54 PE=2
SV=1
Length = 258
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 58/84 (69%), Gaps = 3/84 (3%)
Query: 3 YVNAKTLASGKGNKKKKSSGSKSNPMKL---STDPQSVAARQRRHRISDRFKILQSMVPG 59
+V+ ++L++ ++K + K +TDPQS+ AR+RR +I++R K LQ++VP
Sbjct: 143 WVDGQSLSNSSDDEKASVTSVKGKTRATKGTATDPQSLYARKRREKINERLKTLQNLVPN 202
Query: 60 GTKMDTASMLDEAINYVKFLKAVI 83
GTK+D ++ML+EA++YVKFL+ I
Sbjct: 203 GTKVDISTMLEEAVHYVKFLQLQI 226
>sp|Q9LXD8|HEC3_ARATH Transcription factor HEC3 OS=Arabidopsis thaliana GN=HEC3 PE=1 SV=1
Length = 224
Score = 70.1 bits (170), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 44/65 (67%), Positives = 50/65 (76%)
Query: 24 KSNPMKLSTDPQSVAARQRRHRISDRFKILQSMVPGGTKMDTASMLDEAINYVKFLKAVI 83
K +++S DPQSVAAR RR RIS+R +ILQ +VPGGTKMDTASMLDEAI YVKFLK I
Sbjct: 119 KRRNVRISDDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQI 178
Query: 84 WFHEN 88
N
Sbjct: 179 RLLNN 183
>sp|Q9ZUG9|BH066_ARATH Transcription factor bHLH66 OS=Arabidopsis thaliana GN=BHLH66 PE=2
SV=1
Length = 350
Score = 69.7 bits (169), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 38/50 (76%)
Query: 31 STDPQSVAARQRRHRISDRFKILQSMVPGGTKMDTASMLDEAINYVKFLK 80
+TDP S+A R RR RI++R K LQ +VP G K D ASMLDE I+YVKFL+
Sbjct: 145 ATDPHSIAERLRRERIAERMKALQELVPNGNKTDKASMLDEIIDYVKFLQ 194
>sp|Q9FHA7|HEC1_ARATH Transcription factor HEC1 OS=Arabidopsis thaliana GN=HEC1 PE=1 SV=1
Length = 241
Score = 69.7 bits (169), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 42/57 (73%), Positives = 49/57 (85%)
Query: 24 KSNPMKLSTDPQSVAARQRRHRISDRFKILQSMVPGGTKMDTASMLDEAINYVKFLK 80
K +++S DPQSVAAR RR RIS+R +ILQ +VPGGTKMDTASMLDEAI+YVKFLK
Sbjct: 122 KRRNVRISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLK 178
>sp|Q9SND4|HEC2_ARATH Transcription factor HEC2 OS=Arabidopsis thaliana GN=HEC2 PE=1 SV=1
Length = 231
Score = 69.7 bits (169), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 42/57 (73%), Positives = 49/57 (85%)
Query: 24 KSNPMKLSTDPQSVAARQRRHRISDRFKILQSMVPGGTKMDTASMLDEAINYVKFLK 80
K +++S DPQSVAAR RR RIS+R +ILQ +VPGGTKMDTASMLDEAI+YVKFLK
Sbjct: 119 KRKNVRISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLK 175
>sp|Q8S3D5|BH069_ARATH Transcription factor bHLH69 OS=Arabidopsis thaliana GN=BHLH69 PE=2
SV=2
Length = 310
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 38/50 (76%)
Query: 31 STDPQSVAARQRRHRISDRFKILQSMVPGGTKMDTASMLDEAINYVKFLK 80
+TDP S+A R RR RI++R K LQ +VP G K D ASMLDE I+YVKFL+
Sbjct: 137 ATDPHSIAERLRRERIAERMKSLQELVPNGNKTDKASMLDEIIDYVKFLQ 186
>sp|Q9LSQ3|BH082_ARATH Transcription factor bHLH82 OS=Arabidopsis thaliana GN=BHLH82 PE=2
SV=1
Length = 297
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/50 (58%), Positives = 36/50 (72%)
Query: 31 STDPQSVAARQRRHRISDRFKILQSMVPGGTKMDTASMLDEAINYVKFLK 80
+TDP S+A R RR RI++R K LQ +VP K D ASMLDE I YV+FL+
Sbjct: 106 ATDPHSIAERLRRERIAERMKSLQELVPNTNKTDKASMLDEIIEYVRFLQ 155
>sp|Q93W88|BH137_ARATH Transcription factor bHLH137 OS=Arabidopsis thaliana GN=BHLH137
PE=2 SV=1
Length = 286
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 52/92 (56%), Gaps = 12/92 (13%)
Query: 5 NAKTLASGKGNKKKKSSGSKSNP----------MKLSTDPQSVAARQRRHRISDRFKILQ 54
N+K G+ +KK+K GSK P +TD S+A R RR +IS+R + LQ
Sbjct: 108 NSKEGVEGRKSKKQKR-GSKEEPPTDYIHVRARRGQATDSHSLAERVRREKISERMRTLQ 166
Query: 55 SMVPGGTKMD-TASMLDEAINYVKFLKAVIWF 85
++VPG K+ A MLDE INYV+ L+ + F
Sbjct: 167 NLVPGCDKVTGKALMLDEIINYVQTLQTQVEF 198
>sp|Q8GY61|BH063_ARATH Transcription factor bHLH63 OS=Arabidopsis thaliana GN=BHLH63 PE=2
SV=1
Length = 335
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 31 STDPQSVAARQRRHRISDRFKILQSMVPGGTKMD-TASMLDEAINYVKFLKAVIWF 85
+TD S+A R RR +IS+R K LQ +VPG K+ A MLDE INYV+ L+ I F
Sbjct: 179 ATDSHSIAERVRREKISERMKFLQDLVPGCDKITGKAGMLDEIINYVQSLQRQIEF 234
>sp|Q8GWK7|BEE3_ARATH Transcription factor BEE 3 OS=Arabidopsis thaliana GN=BEE3 PE=2
SV=1
Length = 261
Score = 56.6 bits (135), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Query: 31 STDPQSVAARQRRHRISDRFKILQSMVPGGTK-MDTASMLDEAINYVKFLKAVIWF 85
+TD S+A R RR +I++R K LQ +VPG K M A+MLDE INYV+ L+ + F
Sbjct: 154 ATDSHSIAERVRRGKINERLKCLQDIVPGCYKTMGMATMLDEIINYVQSLQNQVEF 209
>sp|Q9ZPW3|BH064_ARATH Transcription factor bHLH64 OS=Arabidopsis thaliana GN=BHLH64 PE=2
SV=3
Length = 337
Score = 56.6 bits (135), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 1/122 (0%)
Query: 31 STDPQSVAARQRRHRISDRFKILQSMVPGGTKMD-TASMLDEAINYVKFLKAVIWFHENI 89
+TD S+A R RR +IS + K LQ +VPG K+ A MLDE INYV+ L+ + F
Sbjct: 192 ATDRHSLAERARREKISKKMKYLQDIVPGCNKVTGKAGMLDEIINYVQCLQRQVEFLSMK 251
Query: 90 INFADHHHHEHDPPVAFGQLPGSFPYSPESLYSSINNLAAAPVPQQDSMQASETQPFQDF 149
+ + V+ Q F S S + ++ P+ QQ S+ S P Q
Sbjct: 252 LAVLNPELELAVEDVSVKQFQAYFTNVVASKQSIMVDVPLFPLDQQGSLDLSAINPNQTT 311
Query: 150 NV 151
++
Sbjct: 312 SI 313
>sp|Q8GZ13|BEE1_ARATH Transcription factor BEE 1 OS=Arabidopsis thaliana GN=BEE1 PE=2
SV=1
Length = 260
Score = 56.2 bits (134), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Query: 31 STDPQSVAARQRRHRISDRFKILQSMVPGGTK-MDTASMLDEAINYVKFLKAVIWF 85
+TD S+A R RR +I++R + LQ MVPG K M A+MLDE INYV+ L+ + F
Sbjct: 152 ATDSHSLAERVRRGKINERLRCLQDMVPGCYKAMGMATMLDEIINYVQSLQNQVEF 207
>sp|Q9SRT2|BH062_ARATH Transcription factor bHLH62 OS=Arabidopsis thaliana GN=BHLH62 PE=2
SV=1
Length = 456
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Query: 31 STDPQSVAARQRRHRISDRFKILQSMVPGGTKMD-TASMLDEAINYVKFLKAVIWF 85
+TD S+A R RR +IS+R K+LQ +VPG K+ A MLDE INYV+ L+ + F
Sbjct: 265 ATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEF 320
>sp|Q93VJ4|BEE2_ARATH Transcription factor BEE 2 OS=Arabidopsis thaliana GN=BEE2 PE=2
SV=1
Length = 304
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 58/114 (50%), Gaps = 3/114 (2%)
Query: 31 STDPQSVAARQRRHRISDRFKILQSMVPGGTKMD-TASMLDEAINYVKFLKAVIWFHENI 89
+TD S+A R RR +IS + K LQ +VPG K+ A MLDE INYV+ L+ + F
Sbjct: 148 ATDRHSLAERARREKISKKMKCLQDIVPGCNKVTGKAGMLDEIINYVQSLQQQVEFLSMK 207
Query: 90 INFADHHHHEHDPPVAFGQLPGSFPYSPE--SLYSSINNLAAAPVPQQDSMQAS 141
++ + H ++ Q F PE S S + + + P+ QQ S+ S
Sbjct: 208 LSVINPELECHIDDLSAKQFQAYFTGPPEGDSKQSIMADFRSFPLHQQGSLDYS 261
>sp|Q9C8P8|BH080_ARATH Transcription factor bHLH80 OS=Arabidopsis thaliana GN=BHLH80 PE=1
SV=1
Length = 259
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 38/55 (69%), Gaps = 1/55 (1%)
Query: 30 LSTDPQSVAARQRRHRISDRFKILQSMVPGGTK-MDTASMLDEAINYVKFLKAVI 83
+T P+S+A R RR RISDR + LQ +VP K +TA ML+EA+ YVK L++ I
Sbjct: 187 CATHPRSIAERVRRTRISDRIRRLQELVPNMDKQTNTADMLEEAVEYVKALQSQI 241
>sp|Q9M0R0|BH081_ARATH Transcription factor bHLH81 OS=Arabidopsis thaliana GN=BHLH81 PE=2
SV=1
Length = 262
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
Query: 30 LSTDPQSVAARQRRHRISDRFKILQSMVPGGTK-MDTASMLDEAINYVKFLKAVI 83
+T P+S+A R RR RISDR + LQ +VP K +TA ML+EA+ YVK L+ I
Sbjct: 190 CATHPRSIAERVRRTRISDRIRKLQELVPNMDKQTNTADMLEEAVEYVKVLQRQI 244
>sp|Q9FJL4|BH078_ARATH Transcription factor bHLH78 OS=Arabidopsis thaliana GN=BHLH78 PE=2
SV=1
Length = 498
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 31 STDPQSVAARQRRHRISDRFKILQSMVPGGTKMD-TASMLDEAINYVKFLKAVIWF 85
+TD S+A R RR +I +R K+LQ +VPG K+ A MLDE INYV+ L+ + F
Sbjct: 308 ATDSHSLAERVRREKIGERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEF 363
>sp|Q9C670|BH076_ARATH Transcription factor bHLH76 OS=Arabidopsis thaliana GN=BHLH76 PE=2
SV=1
Length = 390
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 31 STDPQSVAARQRRHRISDRFKILQSMVPGGTKM-DTASMLDEAINYVKFLKAVIWF 85
+T+ S+A R RR +IS+R K LQ +VPG K+ A MLDE INYV+ L+ I F
Sbjct: 230 ATNSHSLAERVRREKISERMKFLQDLVPGCDKVTGKAVMLDEIINYVQSLQCQIEF 285
>sp|Q0JXE7|BPE_ARATH Transcription factor BPE OS=Arabidopsis thaliana GN=BPE PE=2 SV=1
Length = 343
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Query: 31 STDPQSVAARQRRHRISDRFKILQSMVPGGTK-MDTASMLDEAINYVKFLKAVIWF 85
+TD S+A R RR +IS+R KILQ +VPG K + A +LDE INY++ L+ + F
Sbjct: 143 ATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEF 198
>sp|Q9LK48|BH077_ARATH Transcription factor bHLH77 OS=Arabidopsis thaliana GN=BHLH77 PE=2
SV=1
Length = 371
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 31 STDPQSVAARQRRHRISDRFKILQSMVPGGTKM-DTASMLDEAINYVKFLKAVIWF 85
+TD S+A R RR +IS+R +LQ +VPG ++ A MLDE INYV+ L+ + F
Sbjct: 198 ATDSHSLAERARREKISERMTLLQDLVPGCNRITGKAVMLDEIINYVQSLQRQVEF 253
>sp|Q9FHA2|ALC_ARATH Transcription factor ALC OS=Arabidopsis thaliana GN=ALC PE=2 SV=1
Length = 210
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 43/65 (66%), Gaps = 2/65 (3%)
Query: 18 KKSSGSKSNPMKLSTDPQ--SVAARQRRHRISDRFKILQSMVPGGTKMDTASMLDEAINY 75
K+S + N +K + D Q +++ ++RR +I+++ K LQ ++P K D ASMLDEAI Y
Sbjct: 79 KRSGAKQRNSLKRNIDAQFHNLSEKKRRSKINEKMKALQKLIPNSNKTDKASMLDEAIEY 138
Query: 76 VKFLK 80
+K L+
Sbjct: 139 LKQLQ 143
>sp|Q6NKN9|BH074_ARATH Transcription factor bHLH74 OS=Arabidopsis thaliana GN=BHLH74 PE=2
SV=1
Length = 366
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Query: 31 STDPQSVAARQRRHRISDRFKILQSMVPGGTKM-DTASMLDEAINYVKFLKAVIWF 85
+T+ S+A R RR +IS+R ++LQ +VPG K+ A MLDE INYV+ L+ + F
Sbjct: 213 ATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEF 268
>sp|Q9CAA9|BH049_ARATH Transcription factor bHLH49 OS=Arabidopsis thaliana GN=BHLH49 PE=2
SV=1
Length = 486
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 31 STDPQSVAARQRRHRISDRFKILQSMVPGGTKM-DTASMLDEAINYVKFLKAVIWF 85
+T+ S+A R RR +IS+R K LQ +VPG K+ A MLDE INYV+ L+ + F
Sbjct: 310 ATNSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVEF 365
>sp|Q8GZ38|UNE10_ARATH Transcription factor UNE10 OS=Arabidopsis thaliana GN=UNE10 PE=2
SV=1
Length = 399
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 46/75 (61%), Gaps = 9/75 (12%)
Query: 15 NKKKKSSGSKSNPMKLSTDPQSVAA------RQRRHRISDRFKILQSMVPGGTKMDTASM 68
++++K +G KS+ +ST AA R+RR +I+ R K LQ +VP +K D ASM
Sbjct: 195 DEEEKKAGGKSS---VSTKRSRAAAIHNQSERKRRDKINQRMKTLQKLVPNSSKTDKASM 251
Query: 69 LDEAINYVKFLKAVI 83
LDE I Y+K L+A +
Sbjct: 252 LDEVIEYLKQLQAQV 266
>sp|Q8GZM7|PIF1_ARATH Transcription factor PIF1 OS=Arabidopsis thaliana GN=PIF1 PE=1 SV=1
Length = 478
Score = 52.8 bits (125), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 34/48 (70%)
Query: 36 SVAARQRRHRISDRFKILQSMVPGGTKMDTASMLDEAINYVKFLKAVI 83
+++ R+RR RI++R K LQ ++P K D ASMLDEAI Y+K L+ I
Sbjct: 290 NLSERKRRDRINERMKALQELIPRCNKSDKASMLDEAIEYMKSLQLQI 337
>sp|O80536|PIF3_ARATH Transcription factor PIF3 OS=Arabidopsis thaliana GN=PIF3 PE=1 SV=1
Length = 524
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 7/79 (8%)
Query: 11 SGKGNKKKKSS----GSKSNPMKLSTDPQSVAARQRRHRISDRFKILQSMVPGGTKMDTA 66
SG G K+ S GSK + S + +++ R+RR RI+++ + LQ ++P K+D A
Sbjct: 323 SGDGRKEAGPSRTGLGSKRS---RSAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKA 379
Query: 67 SMLDEAINYVKFLKAVIWF 85
SMLDEAI Y+K L+ +
Sbjct: 380 SMLDEAIEYLKSLQLQVQI 398
>sp|A4D998|BH075_ARATH Transcription factor bHLH75 OS=Arabidopsis thaliana GN=BHLH75 PE=2
SV=1
Length = 223
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 31 STDPQSVAARQRRHRISDRFKILQSMVPGGTK-MDTASMLDEAINYVKFLKAVIWF 85
+TD S+A R RR +I++R K LQ +VPG K M A MLD I+YV+ L+ I F
Sbjct: 111 ATDSHSLAERVRREKINERLKCLQDLVPGCYKAMGMAVMLDVIIDYVRSLQNQIEF 166
>sp|Q9FUA4|SPT_ARATH Transcription factor SPATULA OS=Arabidopsis thaliana GN=SPT PE=1
SV=1
Length = 373
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 35/50 (70%)
Query: 36 SVAARQRRHRISDRFKILQSMVPGGTKMDTASMLDEAINYVKFLKAVIWF 85
+++ ++RR RI+++ K LQS++P K D ASMLDEAI Y+K L+ +
Sbjct: 203 NLSEKRRRSRINEKMKALQSLIPNSNKTDKASMLDEAIEYLKQLQLQVQM 252
>sp|Q9ZVX2|AMS_ARATH Transcription factor ABORTED MICROSPORES OS=Arabidopsis thaliana
GN=AMS PE=1 SV=2
Length = 571
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 34/44 (77%)
Query: 37 VAARQRRHRISDRFKILQSMVPGGTKMDTASMLDEAINYVKFLK 80
+A R+RR +++DR L+S+VP TK+D AS+L +AINYVK L+
Sbjct: 317 MAERRRRKKLNDRLYALRSLVPRITKLDRASILGDAINYVKELQ 360
>sp|Q9LSE2|ICE1_ARATH Transcription factor ICE1 OS=Arabidopsis thaliana GN=SCRM PE=1 SV=1
Length = 494
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 52/106 (49%), Gaps = 21/106 (19%)
Query: 37 VAARQRRHRISDRFKILQSMVPGGTKMDTASMLDEAINYVKFLKAVIWFHENIINFADHH 96
+A R+RR +++DR +L+S+VP +KMD AS+L +AI+Y+K L I D H
Sbjct: 310 MAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRI---------NDLH 360
Query: 97 HHEHDPPVAFGQLPGSFPYSPESLYSSINNLAAAPVPQQDSMQASE 142
+ P PGS P + S + P PQ S + E
Sbjct: 361 NELESTP------PGSLPPTSSSFH------PLTPTPQTLSCRVKE 394
>sp|Q8VZ02|BH048_ARATH Transcription factor bHLH48 OS=Arabidopsis thaliana GN=BHLH48 PE=2
SV=1
Length = 327
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
Query: 31 STDPQSVAARQRRHRISDRFKILQSMVPGGTKMD-TASMLDEAINYVKFLK 80
+TD S+A R RR +I+ R K+LQ +VPG K+ TA +LDE IN+V+ L+
Sbjct: 192 ATDNHSLAERARREKINARMKLLQELVPGCDKIQGTALVLDEIINHVQTLQ 242
>sp|Q9ZPY8|AIB_ARATH Transcription factor ABA-INDUCIBLE bHLH-TYPE OS=Arabidopsis
thaliana GN=AIB PE=2 SV=2
Length = 566
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 36/51 (70%)
Query: 38 AARQRRHRISDRFKILQSMVPGGTKMDTASMLDEAINYVKFLKAVIWFHEN 88
A RQRR +++ RF L+S+VP +KMD AS+L +AI+Y+K L+ + E+
Sbjct: 399 AERQRREKLNQRFYALRSVVPNISKMDKASLLGDAISYIKELQEKVKIMED 449
>sp|Q9C690|BH122_ARATH Transcription factor bHLH122 OS=Arabidopsis thaliana GN=BHLH122
PE=1 SV=1
Length = 379
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
Query: 30 LSTDPQSVAARQRRHRISDRFKILQSMVPG-GTKMDTASMLDEAINYVKFLKAVI 83
+T P+S+A R RR +IS+R + LQ +VP T+ +TA MLD A+ Y+K L+ +
Sbjct: 310 CATHPRSIAERVRRTKISERMRKLQDLVPNMDTQTNTADMLDLAVQYIKDLQEQV 364
>sp|Q8W2F3|PIF4_ARATH Transcription factor PIF4 OS=Arabidopsis thaliana GN=PIF4 PE=1 SV=1
Length = 430
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 51/80 (63%), Gaps = 5/80 (6%)
Query: 8 TLASGKGNKKKKSSGSKSNPMKLSTDPQSVAARQRRHRISDRFKILQSMVPGGTKMDTAS 67
+L+ GNK + SGS N + + +++ R+RR RI++R K LQ ++P +K D AS
Sbjct: 237 SLSDAIGNKSNQRSGS--NRRSRAAEVHNLSERRRRDRINERMKALQELIPHCSKTDKAS 294
Query: 68 MLDEAINYVKFLK---AVIW 84
+LDEAI+Y+K L+ V+W
Sbjct: 295 ILDEAIDYLKSLQLQLQVMW 314
>sp|Q66GR3|BH130_ARATH Transcription factor bHLH130 OS=Arabidopsis thaliana GN=BHLH130
PE=1 SV=1
Length = 359
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 36/52 (69%), Gaps = 1/52 (1%)
Query: 30 LSTDPQSVAARQRRHRISDRFKILQSMVPGGTK-MDTASMLDEAINYVKFLK 80
+T P+S+A R RR RIS+R + LQ +VP K +T+ MLD A++Y+K L+
Sbjct: 285 CATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTSDMLDLAVDYIKDLQ 336
>sp|O49687|BH004_ARATH Transcription factor MYC4 OS=Arabidopsis thaliana GN=BHLH4 PE=2
SV=1
Length = 589
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 33/44 (75%)
Query: 38 AARQRRHRISDRFKILQSMVPGGTKMDTASMLDEAINYVKFLKA 81
A RQRR +++ RF L+++VP +KMD AS+L +AI+Y+ LK+
Sbjct: 420 AERQRREKLNQRFYSLRAVVPNVSKMDKASLLGDAISYISELKS 463
>sp|Q9T072|BH025_ARATH Transcription factor bHLH25 OS=Arabidopsis thaliana GN=BHLH25 PE=2
SV=2
Length = 328
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 33/44 (75%)
Query: 37 VAARQRRHRISDRFKILQSMVPGGTKMDTASMLDEAINYVKFLK 80
+A R+RR +++ RF L ++VPG KMD AS+L +A+ ++K+L+
Sbjct: 155 IAERKRREKLTQRFVALSALVPGLKKMDKASVLGDALKHIKYLQ 198
>sp|Q9SVU7|BH056_ARATH Putative transcription factor bHLH056 OS=Arabidopsis thaliana
GN=BHLH56 PE=4 SV=2
Length = 445
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 52/105 (49%), Gaps = 8/105 (7%)
Query: 18 KKSSGSKSNPMKLSTDPQSVAARQRRHRISDRFKILQSMVPGGTKMDTASMLDEAINYVK 77
+++ GS S + + ++A R+RR +I+++ K LQ ++P K S LD+AI YVK
Sbjct: 243 EEARGSTSRKRSRTAEMHNLAERRRREKINEKMKTLQQLIPRCNKSTKVSTLDDAIEYVK 302
Query: 78 FLKAVI-------WFHENIINFADHHHHEHDPPVAFGQLPG-SFP 114
L++ I N F H + + P F PG SFP
Sbjct: 303 SLQSQIQGMMSPMMNAGNTQQFMPHMAMDMNRPPPFIPFPGTSFP 347
>sp|Q1PF17|BH018_ARATH Transcription factor bHLH18 OS=Arabidopsis thaliana GN=BHLH18 PE=2
SV=1
Length = 305
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 33/44 (75%)
Query: 37 VAARQRRHRISDRFKILQSMVPGGTKMDTASMLDEAINYVKFLK 80
+A R+RR +++ RF L +++PG KMD AS+L +AI ++K+L+
Sbjct: 129 LAERKRREKLTQRFVALSALIPGLKKMDKASVLGDAIKHIKYLQ 172
>sp|Q9FT81|TT8_ARATH Transcription factor TT8 OS=Arabidopsis thaliana GN=TT8 PE=1 SV=2
Length = 518
Score = 48.5 bits (114), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 5/64 (7%)
Query: 37 VAARQRRHRISDRFKILQSMVPGGTKMDTASMLDEAINYVKFLKAVIWFHENIINFADHH 96
VA R+RR +++++F L+SMVP TKMD S+L + I YV L+ + EN HH
Sbjct: 366 VAERRRREKLNEKFITLRSMVPFVTKMDKVSILGDTIAYVNHLRKRVHELENT-----HH 420
Query: 97 HHEH 100
+H
Sbjct: 421 EQQH 424
>sp|Q9FIP9|ATR2_ARATH Transcription factor ATR2 OS=Arabidopsis thaliana GN=ATR2 PE=1 SV=1
Length = 592
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 33/44 (75%)
Query: 38 AARQRRHRISDRFKILQSMVPGGTKMDTASMLDEAINYVKFLKA 81
A RQRR +++ RF L+++VP +KMD AS+L +AI+Y+ LK+
Sbjct: 419 AERQRREKLNQRFYSLRAVVPNVSKMDKASLLGDAISYINELKS 462
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.129 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,953,151
Number of Sequences: 539616
Number of extensions: 2391307
Number of successful extensions: 8507
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 8342
Number of HSP's gapped (non-prelim): 175
length of query: 169
length of database: 191,569,459
effective HSP length: 109
effective length of query: 60
effective length of database: 132,751,315
effective search space: 7965078900
effective search space used: 7965078900
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)