Query 039972
Match_columns 169
No_of_seqs 195 out of 1002
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 03:51:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039972.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039972hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00083 HLH Helix-loop-helix d 99.5 1.7E-14 3.7E-19 95.2 5.9 51 33-83 6-59 (60)
2 PF00010 HLH: Helix-loop-helix 99.5 2E-14 4.3E-19 94.5 5.3 48 33-80 3-55 (55)
3 smart00353 HLH helix loop heli 99.5 5.4E-14 1.2E-18 91.2 6.8 49 36-84 1-52 (53)
4 KOG1318 Helix loop helix trans 99.2 1.8E-11 3.9E-16 109.6 6.7 56 28-83 230-289 (411)
5 KOG4304 Transcriptional repres 99.0 2.8E-10 6.1E-15 96.5 3.3 52 32-83 33-92 (250)
6 KOG1319 bHLHZip transcription 99.0 3.5E-10 7.6E-15 92.3 3.2 57 32-88 63-126 (229)
7 KOG2483 Upstream transcription 98.7 9E-08 2E-12 80.5 8.6 58 27-84 55-115 (232)
8 KOG3561 Aryl-hydrocarbon recep 98.6 7.6E-08 1.6E-12 92.5 5.7 51 32-82 21-75 (803)
9 KOG2588 Predicted DNA-binding 98.2 8.6E-07 1.9E-11 86.0 3.5 54 30-83 275-329 (953)
10 KOG0561 bHLH transcription fac 98.1 3.6E-06 7.9E-11 73.2 3.9 50 34-83 63-114 (373)
11 KOG3960 Myogenic helix-loop-he 98.0 2.8E-05 6E-10 66.2 8.4 58 36-93 123-182 (284)
12 PLN03217 transcription factor 98.0 2.6E-05 5.5E-10 56.5 6.4 51 43-93 19-75 (93)
13 KOG4029 Transcription factor H 97.9 2.4E-05 5.3E-10 65.0 5.4 55 33-87 111-169 (228)
14 KOG3910 Helix loop helix trans 95.7 0.0054 1.2E-07 56.9 1.8 52 34-85 529-584 (632)
15 KOG4447 Transcription factor T 95.7 0.0024 5.2E-08 51.0 -0.5 51 33-83 80-132 (173)
16 KOG3560 Aryl-hydrocarbon recep 95.1 0.022 4.8E-07 53.5 3.8 39 39-77 33-75 (712)
17 KOG3898 Transcription factor N 93.6 0.064 1.4E-06 45.7 3.2 50 34-83 75-127 (254)
18 KOG3558 Hypoxia-inducible fact 92.7 0.075 1.6E-06 51.1 2.4 46 33-78 48-97 (768)
19 KOG3559 Transcriptional regula 91.3 0.24 5.3E-06 45.4 3.9 42 37-78 7-52 (598)
20 KOG4395 Transcription factor A 80.2 2.9 6.4E-05 36.1 4.4 49 36-84 179-230 (285)
21 KOG3582 Mlx interactors and re 75.2 0.67 1.4E-05 45.0 -0.9 51 33-83 653-708 (856)
22 PF05308 Mito_fiss_reg: Mitoch 70.1 50 0.0011 28.3 9.4 30 65-94 113-142 (253)
23 KOG4447 Transcription factor T 66.5 4.8 0.0001 32.4 2.3 44 38-81 29-74 (173)
24 PRK13702 replication protein; 65.9 23 0.0005 25.6 5.5 42 33-74 22-76 (85)
25 KOG3584 cAMP response element 53.6 9.3 0.0002 33.8 2.0 18 73-90 311-328 (348)
26 PF02344 Myc-LZ: Myc leucine z 48.2 22 0.00047 21.2 2.4 16 40-55 14-29 (32)
27 KOG4572 Predicted DNA-binding 44.1 1.2E+02 0.0027 30.8 8.1 48 35-82 524-585 (1424)
28 PF14689 SPOB_a: Sensor_kinase 42.4 99 0.0021 20.4 5.3 42 40-88 17-58 (62)
29 KOG3582 Mlx interactors and re 42.3 9.4 0.0002 37.4 0.3 52 34-88 790-846 (856)
30 COG3074 Uncharacterized protei 39.7 50 0.0011 23.3 3.5 26 69-94 13-38 (79)
31 TIGR00986 3a0801s05tom22 mitoc 39.6 20 0.00043 28.4 1.7 36 44-79 49-84 (145)
32 COG4710 Predicted DNA-binding 33.7 1.8E+02 0.0038 20.7 5.7 32 46-81 16-48 (80)
33 PLN02705 beta-amylase 30.7 67 0.0015 31.2 4.0 23 34-56 87-112 (681)
34 PF04281 Tom22: Mitochondrial 30.7 33 0.00072 26.8 1.7 21 42-62 49-69 (137)
35 PF12180 EABR: TSG101 and ALIX 30.2 56 0.0012 19.9 2.2 13 74-86 23-35 (35)
36 PF06005 DUF904: Protein of un 27.2 1.2E+02 0.0027 20.9 3.9 24 68-91 12-35 (72)
37 PRK15422 septal ring assembly 27.1 1.2E+02 0.0026 21.7 3.9 27 68-94 12-38 (79)
38 PF00601 Flu_NS2: Influenza no 26.6 58 0.0013 23.9 2.2 56 33-88 27-85 (94)
39 PRK11020 hypothetical protein; 26.4 1.3E+02 0.0028 23.1 4.1 48 43-90 7-54 (118)
40 smart00338 BRLZ basic region l 26.3 94 0.002 20.4 3.1 19 73-91 25-43 (65)
41 PF03791 KNOX2: KNOX2 domain ; 25.2 1E+02 0.0022 20.3 3.0 19 68-86 32-50 (52)
42 PF00170 bZIP_1: bZIP transcri 24.8 1.1E+02 0.0024 20.0 3.2 17 39-55 17-33 (64)
43 PHA02957 hypothetical protein; 24.5 30 0.00065 28.0 0.5 16 154-169 78-93 (206)
44 KOG3042 Panthothenate syntheta 23.9 1.2E+02 0.0027 26.0 4.0 46 37-83 198-243 (283)
45 PRK15365 type III secretion sy 23.5 1.5E+02 0.0032 22.2 3.9 43 45-87 48-93 (107)
46 PF04380 BMFP: Membrane fusoge 21.8 1.3E+02 0.0027 21.0 3.2 51 37-88 28-78 (79)
47 KOG1924 RhoA GTPase effector D 21.7 3.8E+02 0.0083 27.3 7.3 10 64-73 455-464 (1102)
48 PF09278 MerR-DNA-bind: MerR, 21.6 1.6E+02 0.0035 18.8 3.5 32 62-93 31-62 (65)
49 PF09006 Surfac_D-trimer: Lung 21.6 1.3E+02 0.0028 19.4 2.9 13 77-89 2-14 (46)
50 COG3416 Uncharacterized protei 20.5 3.9E+02 0.0085 22.7 6.3 23 66-88 50-76 (233)
51 PF10465 Inhibitor_I24: PinA p 20.3 87 0.0019 24.4 2.2 19 65-83 121-139 (140)
52 KOG1924 RhoA GTPase effector D 20.2 2.5E+02 0.0054 28.6 5.7 8 152-159 592-599 (1102)
53 PRK14069 exodeoxyribonuclease 20.1 3.6E+02 0.0079 19.8 6.4 62 46-107 10-76 (95)
No 1
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.53 E-value=1.7e-14 Score=95.24 Aligned_cols=51 Identities=33% Similarity=0.660 Sum_probs=48.6
Q ss_pred CcccHHHHHHHHHHHHHHHHHHhcCCCC---CCCChhhHHHHHHHHHHHHHHHH
Q 039972 33 DPQSVAARQRRHRISDRFKILQSMVPGG---TKMDTASMLDEAINYVKFLKAVI 83 (169)
Q Consensus 33 ~~h~~~ER~RR~kin~~~~~Lr~lvP~~---~K~dkasiL~~aI~YIk~Lq~~v 83 (169)
..|+..||+||++||++|..|+++||.. .|+||++||+.||+||+.|+.++
T Consensus 6 ~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~ 59 (60)
T cd00083 6 EAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELL 59 (60)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 4699999999999999999999999987 89999999999999999999876
No 2
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.52 E-value=2e-14 Score=94.49 Aligned_cols=48 Identities=38% Similarity=0.655 Sum_probs=45.3
Q ss_pred CcccHHHHHHHHHHHHHHHHHHhcCCCC-----CCCChhhHHHHHHHHHHHHH
Q 039972 33 DPQSVAARQRRHRISDRFKILQSMVPGG-----TKMDTASMLDEAINYVKFLK 80 (169)
Q Consensus 33 ~~h~~~ER~RR~kin~~~~~Lr~lvP~~-----~K~dkasiL~~aI~YIk~Lq 80 (169)
..|+..||+||++||++|..|+.+||.+ .|+||++||+.||+||++||
T Consensus 3 ~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 3 QKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 3599999999999999999999999976 78999999999999999997
No 3
>smart00353 HLH helix loop helix domain.
Probab=99.51 E-value=5.4e-14 Score=91.20 Aligned_cols=49 Identities=33% Similarity=0.581 Sum_probs=45.7
Q ss_pred cHHHHHHHHHHHHHHHHHHhcCCC---CCCCChhhHHHHHHHHHHHHHHHHH
Q 039972 36 SVAARQRRHRISDRFKILQSMVPG---GTKMDTASMLDEAINYVKFLKAVIW 84 (169)
Q Consensus 36 ~~~ER~RR~kin~~~~~Lr~lvP~---~~K~dkasiL~~aI~YIk~Lq~~v~ 84 (169)
+..||+||++||++|..|+++||. ..|+||++||+.||+||+.|+.+++
T Consensus 1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 1 NARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 368999999999999999999994 6899999999999999999999875
No 4
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=99.22 E-value=1.8e-11 Score=109.60 Aligned_cols=56 Identities=25% Similarity=0.475 Sum_probs=49.9
Q ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHhcCCCC----CCCChhhHHHHHHHHHHHHHHHH
Q 039972 28 MKLSTDPQSVAARQRRHRISDRFKILQSMVPGG----TKMDTASMLDEAINYVKFLKAVI 83 (169)
Q Consensus 28 ~~~~~~~h~~~ER~RR~kin~~~~~Lr~lvP~~----~K~dkasiL~~aI~YIk~Lq~~v 83 (169)
.+..++.|+.+|||||++||++|.+|..|||.| .|..|..||..+++||+.||+..
T Consensus 230 dr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~ 289 (411)
T KOG1318|consen 230 DRRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTL 289 (411)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHH
Confidence 344567899999999999999999999999987 57779999999999999999854
No 5
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]
Probab=98.98 E-value=2.8e-10 Score=96.47 Aligned_cols=52 Identities=21% Similarity=0.415 Sum_probs=46.7
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHhcCCC--------CCCCChhhHHHHHHHHHHHHHHHH
Q 039972 32 TDPQSVAARQRRHRISDRFKILQSMVPG--------GTKMDTASMLDEAINYVKFLKAVI 83 (169)
Q Consensus 32 ~~~h~~~ER~RR~kin~~~~~Lr~lvP~--------~~K~dkasiL~~aI~YIk~Lq~~v 83 (169)
+..+-+.||+||+|||++|.+|++||+. -.|++||.||+-||+|++.|+...
T Consensus 33 k~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~ 92 (250)
T KOG4304|consen 33 KVRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQ 92 (250)
T ss_pred hhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhccc
Confidence 3457899999999999999999999994 278999999999999999999854
No 6
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=98.96 E-value=3.5e-10 Score=92.29 Aligned_cols=57 Identities=28% Similarity=0.470 Sum_probs=49.9
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHhcCCCC-------CCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 039972 32 TDPQSVAARQRRHRISDRFKILQSMVPGG-------TKMDTASMLDEAINYVKFLKAVIWFHEN 88 (169)
Q Consensus 32 ~~~h~~~ER~RR~kin~~~~~Lr~lvP~~-------~K~dkasiL~~aI~YIk~Lq~~v~~L~~ 88 (169)
+..|.-+||+||+-||..+..|+.|||.| .|+.||.||..+|+||.+|+.++...+.
T Consensus 63 r~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~ 126 (229)
T KOG1319|consen 63 RRAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEE 126 (229)
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34699999999999999999999999954 4888999999999999999998755444
No 7
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=98.68 E-value=9e-08 Score=80.48 Aligned_cols=58 Identities=24% Similarity=0.281 Sum_probs=48.9
Q ss_pred CCCCCCCcccHHHHHHHHHHHHHHHHHHhcCCCC--CCCC-hhhHHHHHHHHHHHHHHHHH
Q 039972 27 PMKLSTDPQSVAARQRRHRISDRFKILQSMVPGG--TKMD-TASMLDEAINYVKFLKAVIW 84 (169)
Q Consensus 27 ~~~~~~~~h~~~ER~RR~kin~~~~~Lr~lvP~~--~K~d-kasiL~~aI~YIk~Lq~~v~ 84 (169)
.....+..|+..||+||+.|+++|..|+.+||.+ .+.. .++||+.|++||+.|+.+..
T Consensus 55 ~~~~~R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~ 115 (232)
T KOG2483|consen 55 SAASSRAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSA 115 (232)
T ss_pred CCCcchhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHH
Confidence 3444556799999999999999999999999974 3444 79999999999999998753
No 8
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]
Probab=98.57 E-value=7.6e-08 Score=92.49 Aligned_cols=51 Identities=24% Similarity=0.421 Sum_probs=48.0
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHhcCCCC----CCCChhhHHHHHHHHHHHHHHH
Q 039972 32 TDPQSVAARQRRHRISDRFKILQSMVPGG----TKMDTASMLDEAINYVKFLKAV 82 (169)
Q Consensus 32 ~~~h~~~ER~RR~kin~~~~~Lr~lvP~~----~K~dkasiL~~aI~YIk~Lq~~ 82 (169)
++.|+.+||+||+++|..|.+|.+|||.| .|+||.+||.+||++||.+++.
T Consensus 21 Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 21 RENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence 56799999999999999999999999985 6999999999999999999985
No 9
>KOG2588 consensus Predicted DNA-binding protein [Transcription]
Probab=98.21 E-value=8.6e-07 Score=86.02 Aligned_cols=54 Identities=24% Similarity=0.484 Sum_probs=49.6
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHHHhcCCCC-CCCChhhHHHHHHHHHHHHHHHH
Q 039972 30 LSTDPQSVAARQRRHRISDRFKILQSMVPGG-TKMDTASMLDEAINYVKFLKAVI 83 (169)
Q Consensus 30 ~~~~~h~~~ER~RR~kin~~~~~Lr~lvP~~-~K~dkasiL~~aI~YIk~Lq~~v 83 (169)
..+..|+++||+.|..|||+|.+|+++||+. .|+.|..+|..||+||++|+..-
T Consensus 275 ~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~n 329 (953)
T KOG2588|consen 275 EKRTAHNIIEKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYN 329 (953)
T ss_pred cccchhhHHHHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhccc
Confidence 4456799999999999999999999999985 89999999999999999999854
No 10
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=98.05 E-value=3.6e-06 Score=73.25 Aligned_cols=50 Identities=24% Similarity=0.490 Sum_probs=45.4
Q ss_pred cccHHHHHHHHHHHHHHHHHHhcCCC--CCCCChhhHHHHHHHHHHHHHHHH
Q 039972 34 PQSVAARQRRHRISDRFKILQSMVPG--GTKMDTASMLDEAINYVKFLKAVI 83 (169)
Q Consensus 34 ~h~~~ER~RR~kin~~~~~Lr~lvP~--~~K~dkasiL~~aI~YIk~Lq~~v 83 (169)
--+..||+|=.-||-.|..||+|+|. +.|++||.||+.+.+||.+|+.+.
T Consensus 63 IANsNERRRMQSINAGFqsLr~LlPr~eGEKLSKAAILQQTa~yI~~Le~~K 114 (373)
T KOG0561|consen 63 IANSNERRRMQSINAGFQSLRALLPRKEGEKLSKAAILQQTADYIHQLEGHK 114 (373)
T ss_pred hhcchHHHHHHhhhHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHhcc
Confidence 34567999999999999999999996 799999999999999999999854
No 11
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=98.02 E-value=2.8e-05 Score=66.24 Aligned_cols=58 Identities=17% Similarity=0.356 Sum_probs=49.7
Q ss_pred cHHHHHHHHHHHHHHHHHHh-cCCC-CCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039972 36 SVAARQRRHRISDRFKILQS-MVPG-GTKMDTASMLDEAINYVKFLKAVIWFHENIINFA 93 (169)
Q Consensus 36 ~~~ER~RR~kin~~~~~Lr~-lvP~-~~K~dkasiL~~aI~YIk~Lq~~v~~L~~~~~~~ 93 (169)
.+.||+|=.|+||.|.+|+. -.++ ...+-|..||..||+||..||.-++++......+
T Consensus 123 TMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~~~~~~ 182 (284)
T KOG3960|consen 123 TMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQDQAEKGL 182 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhhccchhh
Confidence 46799999999999999985 5565 5889999999999999999999999887655544
No 12
>PLN03217 transcription factor ATBS1; Provisional
Probab=97.98 E-value=2.6e-05 Score=56.48 Aligned_cols=51 Identities=22% Similarity=0.310 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHhcCCC------CCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039972 43 RHRISDRFKILQSMVPG------GTKMDTASMLDEAINYVKFLKAVIWFHENIINFA 93 (169)
Q Consensus 43 R~kin~~~~~Lr~lvP~------~~K~dkasiL~~aI~YIk~Lq~~v~~L~~~~~~~ 93 (169)
-+.|+|.+..|+.|+|. ..|...+-||.||+.||+.|+.+|..|.+....+
T Consensus 19 ddqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSerLs~L 75 (93)
T PLN03217 19 EDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERLSEL 75 (93)
T ss_pred HHHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999994 3567778899999999999999999998766554
No 13
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]
Probab=97.86 E-value=2.4e-05 Score=64.97 Aligned_cols=55 Identities=22% Similarity=0.462 Sum_probs=48.7
Q ss_pred CcccHHHHHHHHHHHHHHHHHHhcCCC----CCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 039972 33 DPQSVAARQRRHRISDRFKILQSMVPG----GTKMDTASMLDEAINYVKFLKAVIWFHE 87 (169)
Q Consensus 33 ~~h~~~ER~RR~kin~~~~~Lr~lvP~----~~K~dkasiL~~aI~YIk~Lq~~v~~L~ 87 (169)
..++..||.|=+.+|..|..||.+||. ..|+.|..+|..||.||++|+.-++..+
T Consensus 111 ~~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~ 169 (228)
T KOG4029|consen 111 QARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQE 169 (228)
T ss_pred hhhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhcccc
Confidence 346777999999999999999999994 5789999999999999999999887654
No 14
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=95.70 E-value=0.0054 Score=56.90 Aligned_cols=52 Identities=19% Similarity=0.220 Sum_probs=41.9
Q ss_pred cccHHHHHHHHHHHHHHHHHHhcCCCC----CCCChhhHHHHHHHHHHHHHHHHHH
Q 039972 34 PQSVAARQRRHRISDRFKILQSMVPGG----TKMDTASMLDEAINYVKFLKAVIWF 85 (169)
Q Consensus 34 ~h~~~ER~RR~kin~~~~~Lr~lvP~~----~K~dkasiL~~aI~YIk~Lq~~v~~ 85 (169)
..++.||.|-..||+.|++|..+.--- ....|.-||..||.-|-.|++||.+
T Consensus 529 aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRE 584 (632)
T KOG3910|consen 529 ANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRE 584 (632)
T ss_pred hhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHH
Confidence 445667777778999999999887532 3345899999999999999999965
No 15
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=95.68 E-value=0.0024 Score=51.01 Aligned_cols=51 Identities=27% Similarity=0.498 Sum_probs=45.9
Q ss_pred CcccHHHHHHHHHHHHHHHHHHhcCCC--CCCCChhhHHHHHHHHHHHHHHHH
Q 039972 33 DPQSVAARQRRHRISDRFKILQSMVPG--GTKMDTASMLDEAINYVKFLKAVI 83 (169)
Q Consensus 33 ~~h~~~ER~RR~kin~~~~~Lr~lvP~--~~K~dkasiL~~aI~YIk~Lq~~v 83 (169)
..|++-||+|-..+|+.|.+||.++|. ..|++|.--|.-|..||-+|=+-+
T Consensus 80 v~anvrerqRtqsLn~AF~~lr~iiptlPsdklSkiqtLklA~ryidfl~~vl 132 (173)
T KOG4447|consen 80 VMANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQVL 132 (173)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHhhcCCCCccccccccchhhcccCCchhhhcc
Confidence 458999999999999999999999996 589999999999999999986543
No 16
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]
Probab=95.13 E-value=0.022 Score=53.55 Aligned_cols=39 Identities=26% Similarity=0.526 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCC----CCCCChhhHHHHHHHHHH
Q 039972 39 ARQRRHRISDRFKILQSMVPG----GTKMDTASMLDEAINYVK 77 (169)
Q Consensus 39 ER~RR~kin~~~~~Lr~lvP~----~~K~dkasiL~~aI~YIk 77 (169)
-|+-|+|+|-.++.|.+|+|- .+|+||.|||.-+|-|++
T Consensus 33 SKRHRdRLNaELD~lAsLLPfpqdiisKLDkLSVLRLSVSyLr 75 (712)
T KOG3560|consen 33 SKRHRDRLNAELDHLASLLPFPQDIISKLDKLSVLRLSVSYLR 75 (712)
T ss_pred chhHHHHhhhHHHHHHHhcCCCHHHHhhhhhhhhhhhhHHHHH
Confidence 566799999999999999994 599999999999999985
No 17
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]
Probab=93.62 E-value=0.064 Score=45.71 Aligned_cols=50 Identities=26% Similarity=0.453 Sum_probs=42.7
Q ss_pred cccHHHHHHHHHHHHHHHHHHhcCCC---CCCCChhhHHHHHHHHHHHHHHHH
Q 039972 34 PQSVAARQRRHRISDRFKILQSMVPG---GTKMDTASMLDEAINYVKFLKAVI 83 (169)
Q Consensus 34 ~h~~~ER~RR~kin~~~~~Lr~lvP~---~~K~dkasiL~~aI~YIk~Lq~~v 83 (169)
.=+.-||+|=..+|+-|+.||.+||. ..|+.|+..|.-|-.||..|++-.
T Consensus 75 kaNaRER~RMH~LNdAld~LReviP~~~~~~klskIetl~~a~~yi~als~~~ 127 (254)
T KOG3898|consen 75 KANARERTRMHDLNDALDALREVIPHGLHPPKLSKIETLRLAANYIAALSEVL 127 (254)
T ss_pred cccchhhccccchhHHHHHhHhhccCcCCCCCCCcchhHHhhhcchhhhcccc
Confidence 34566888888999999999999994 589999999999999999998644
No 18
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]
Probab=92.71 E-value=0.075 Score=51.14 Aligned_cols=46 Identities=28% Similarity=0.527 Sum_probs=39.7
Q ss_pred CcccHHHHHHHHHHHHHHHHHHhcCCC----CCCCChhhHHHHHHHHHHH
Q 039972 33 DPQSVAARQRRHRISDRFKILQSMVPG----GTKMDTASMLDEAINYVKF 78 (169)
Q Consensus 33 ~~h~~~ER~RR~kin~~~~~Lr~lvP~----~~K~dkasiL~~aI~YIk~ 78 (169)
+...-+.|-||.|-|+-|.+|..++|- ..-+|||+|+.-||-|++-
T Consensus 48 EkSRdAARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLRl 97 (768)
T KOG3558|consen 48 EKSRDAARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLRL 97 (768)
T ss_pred hhhhhhhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHHH
Confidence 344567899999999999999999993 3779999999999999874
No 19
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]
Probab=91.31 E-value=0.24 Score=45.44 Aligned_cols=42 Identities=31% Similarity=0.486 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCC----CCCCChhhHHHHHHHHHHH
Q 039972 37 VAARQRRHRISDRFKILQSMVPG----GTKMDTASMLDEAINYVKF 78 (169)
Q Consensus 37 ~~ER~RR~kin~~~~~Lr~lvP~----~~K~dkasiL~~aI~YIk~ 78 (169)
.+.|.||++-|-.|.+|..++|- ...+|||+|+.-|..|||.
T Consensus 7 naA~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKm 52 (598)
T KOG3559|consen 7 NAARTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKM 52 (598)
T ss_pred hHHHHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHH
Confidence 46899999999999999999994 2569999999999999985
No 20
>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription]
Probab=80.24 E-value=2.9 Score=36.10 Aligned_cols=49 Identities=22% Similarity=0.354 Sum_probs=42.2
Q ss_pred cHHHHHHHHHHHHHHHHHHhcCCC---CCCCChhhHHHHHHHHHHHHHHHHH
Q 039972 36 SVAARQRRHRISDRFKILQSMVPG---GTKMDTASMLDEAINYVKFLKAVIW 84 (169)
Q Consensus 36 ~~~ER~RR~kin~~~~~Lr~lvP~---~~K~dkasiL~~aI~YIk~Lq~~v~ 84 (169)
+..||+|=..+|..|+.||..||. ..|++|-..|..|-.||-.|-..+.
T Consensus 179 narErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~~~l~ 230 (285)
T KOG4395|consen 179 NARERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALGCLLD 230 (285)
T ss_pred chHHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhHHhhc
Confidence 466888888999999999999996 4788999999999999998876653
No 21
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=75.19 E-value=0.67 Score=44.97 Aligned_cols=51 Identities=20% Similarity=0.350 Sum_probs=44.4
Q ss_pred CcccHHHHHHHHHHHHHHHHHHhcCCCC-----CCCChhhHHHHHHHHHHHHHHHH
Q 039972 33 DPQSVAARQRRHRISDRFKILQSMVPGG-----TKMDTASMLDEAINYVKFLKAVI 83 (169)
Q Consensus 33 ~~h~~~ER~RR~kin~~~~~Lr~lvP~~-----~K~dkasiL~~aI~YIk~Lq~~v 83 (169)
..|+.+|.+||.+|+-++..|-+++-+. .|+.++.-+..+++||..++...
T Consensus 653 it~~Sa~qkrr~n~kl~~~~~Ns~~Sn~~~l~s~k~t~~~~~q~~vhYi~~t~~e~ 708 (856)
T KOG3582|consen 653 ITHISAEQKRRFNIKLQFDVLNSLSSNSSSLSSIKTTNSNSLQKTVHYINVTQQER 708 (856)
T ss_pred ccCccHHHHHHhhHHhhhHhhhhhccCcccccchhhhccccccCceeeeeccchhc
Confidence 4599999999999999999999999863 56778888999999998887754
No 22
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=70.14 E-value=50 Score=28.27 Aligned_cols=30 Identities=10% Similarity=-0.051 Sum_probs=24.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039972 65 TASMLDEAINYVKFLKAVIWFHENIINFAD 94 (169)
Q Consensus 65 kasiL~~aI~YIk~Lq~~v~~L~~~~~~~~ 94 (169)
....=++||+-|..||.++..|.+....+-
T Consensus 113 ~~~~~~~AlqKIsALEdELs~LRaQIA~IV 142 (253)
T PF05308_consen 113 DLPANEAALQKISALEDELSRLRAQIAKIV 142 (253)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567899999999999999998777653
No 23
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=66.50 E-value=4.8 Score=32.42 Aligned_cols=44 Identities=23% Similarity=0.354 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCC--CCCChhhHHHHHHHHHHHHHH
Q 039972 38 AARQRRHRISDRFKILQSMVPGG--TKMDTASMLDEAINYVKFLKA 81 (169)
Q Consensus 38 ~ER~RR~kin~~~~~Lr~lvP~~--~K~dkasiL~~aI~YIk~Lq~ 81 (169)
.|+.|..++++.+.-|+.|+|+. .++.+.--|.-+-+||.+|.+
T Consensus 29 ~e~~R~~~ls~~s~l~g~l~pgspa~gk~~~ktlr~~~~~~~~~dE 74 (173)
T KOG4447|consen 29 KERGRKRRLSDASTLLGKLEPGSPADGKRGKKTLRIGTDSIQSLDE 74 (173)
T ss_pred HHHhHHhhhhhhhhhccccCCCCCCcccccccccccCCCchhhHHH
Confidence 57788889999999999999973 444333335555555555544
No 24
>PRK13702 replication protein; Provisional
Probab=65.91 E-value=23 Score=25.65 Aligned_cols=42 Identities=24% Similarity=0.387 Sum_probs=31.3
Q ss_pred CcccHHHHHHH--HHHHHHHHHHHhcCCCC-----------CCCChhhHHHHHHH
Q 039972 33 DPQSVAARQRR--HRISDRFKILQSMVPGG-----------TKMDTASMLDEAIN 74 (169)
Q Consensus 33 ~~h~~~ER~RR--~kin~~~~~Lr~lvP~~-----------~K~dkasiL~~aI~ 74 (169)
.+++.+||.|. .|..+.-++|.-.|++. ..+..|.+|+..|+
T Consensus 22 ~Pls~aErQr~svaRKr~THkei~vfi~n~lK~~L~elc~~~glTQAe~IE~LIe 76 (85)
T PRK13702 22 NPLSAAEKQRASVARKRATHKEIKVFIQNPLKDKLMELCEEEGLTQAEMIERLIE 76 (85)
T ss_pred CCCCHHHHHHHHHHHHHHhhhhhheeecHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 47889999984 56666777888888852 45677888887775
No 25
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=53.59 E-value=9.3 Score=33.78 Aligned_cols=18 Identities=33% Similarity=0.292 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 039972 73 INYVKFLKAVIWFHENII 90 (169)
Q Consensus 73 I~YIk~Lq~~v~~L~~~~ 90 (169)
=+|||.|+.+|..||...
T Consensus 311 KEYVKCLENRVAVLENQN 328 (348)
T KOG3584|consen 311 KEYVKCLENRVAVLENQN 328 (348)
T ss_pred hHHHHHHHhHHHHHhccc
Confidence 489999999998777533
No 26
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=48.19 E-value=22 Score=21.23 Aligned_cols=16 Identities=25% Similarity=0.650 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHh
Q 039972 40 RQRRHRISDRFKILQS 55 (169)
Q Consensus 40 R~RR~kin~~~~~Lr~ 55 (169)
|+||+.++.++..||.
T Consensus 14 rrr~eqLK~kLeqlrn 29 (32)
T PF02344_consen 14 RRRREQLKHKLEQLRN 29 (32)
T ss_dssp HHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHhc
Confidence 5778999999999985
No 27
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=44.13 E-value=1.2e+02 Score=30.82 Aligned_cols=48 Identities=27% Similarity=0.425 Sum_probs=33.3
Q ss_pred ccHHHHHHHHHHHHHHHH--HHhcCCCC----------CCCCh--hhHHHHHHHHHHHHHHH
Q 039972 35 QSVAARQRRHRISDRFKI--LQSMVPGG----------TKMDT--ASMLDEAINYVKFLKAV 82 (169)
Q Consensus 35 h~~~ER~RR~kin~~~~~--Lr~lvP~~----------~K~dk--asiL~~aI~YIk~Lq~~ 82 (169)
.+.+|.+.|+....+|+. |+.++|++ .|..| ..+=+=|.+|||.||.-
T Consensus 524 f~eaEekkREqfGk~fkKhFLha~ff~gfDn~P~~fckak~eKfDcdLPdIa~edik~Lqd~ 585 (1424)
T KOG4572|consen 524 FSEAEEKKREQFGKKFKKHFLHALFFGGFDNLPEFFCKAKLEKFDCDLPDIAKEDIKDLQDA 585 (1424)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhcccccCCHHHhcCChhhcCCCCchhhHHHHHHHHHh
Confidence 356789999999888764 88888853 22222 23445578899999874
No 28
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=42.38 E-value=99 Score=20.39 Aligned_cols=42 Identities=19% Similarity=0.366 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 039972 40 RQRRHRISDRFKILQSMVPGGTKMDTASMLDEAINYVKFLKAVIWFHEN 88 (169)
Q Consensus 40 R~RR~kin~~~~~Lr~lvP~~~K~dkasiL~~aI~YIk~Lq~~v~~L~~ 88 (169)
|.-|--...++..+..++- .-=.++|.+||+.+-..++.+..
T Consensus 17 R~~RHD~~NhLqvI~gllq-------lg~~~~a~eYi~~~~~~~~~~s~ 58 (62)
T PF14689_consen 17 RAQRHDFLNHLQVIYGLLQ-------LGKYEEAKEYIKELSKDLQQESE 58 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------TT-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHH-------CCCHHHHHHHHHHHHHHHHHHHH
Confidence 4457777888888888763 22357899999999998887754
No 29
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=42.31 E-value=9.4 Score=37.41 Aligned_cols=52 Identities=19% Similarity=0.168 Sum_probs=43.8
Q ss_pred cccHHHHHHHHHHHHHHHHHHhcCCC-----CCCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 039972 34 PQSVAARQRRHRISDRFKILQSMVPG-----GTKMDTASMLDEAINYVKFLKAVIWFHEN 88 (169)
Q Consensus 34 ~h~~~ER~RR~kin~~~~~Lr~lvP~-----~~K~dkasiL~~aI~YIk~Lq~~v~~L~~ 88 (169)
.|..++|++|-.+.+++..|-.|.|. -.+..+++||. +.|+.+++.-+.+.+
T Consensus 790 ~sih~lrr~~~~~~dq~~sL~alrp~v~~~~~ql~S~tS~L~---dp~~~~eq~ska~~e 846 (856)
T KOG3582|consen 790 GSIHALRRTRLNWLDQFCSLPALRPQVLLNLRQLLSSTSILT---DPIKQPEQASKAVTE 846 (856)
T ss_pred chHHHHHHHHHHHhhccccHHHHHHHHHhhHHHhhhhhhccc---CcccchHHHHHHHHh
Confidence 37889999999999999999999995 36678999998 888998887766544
No 30
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.69 E-value=50 Score=23.33 Aligned_cols=26 Identities=19% Similarity=0.138 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039972 69 LDEAINYVKFLKAVIWFHENIINFAD 94 (169)
Q Consensus 69 L~~aI~YIk~Lq~~v~~L~~~~~~~~ 94 (169)
+..||+-|.-||-.|++|++..+.+.
T Consensus 13 iqqAvdTI~LLQmEieELKEknn~l~ 38 (79)
T COG3074 13 VQQAIDTITLLQMEIEELKEKNNSLS 38 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhH
Confidence 56788888888888888887666543
No 31
>TIGR00986 3a0801s05tom22 mitochondrial import receptor subunit Tom22. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom22 proteins.
Probab=39.61 E-value=20 Score=28.45 Aligned_cols=36 Identities=25% Similarity=0.288 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhcCCCCCCCChhhHHHHHHHHHHHH
Q 039972 44 HRISDRFKILQSMVPGGTKMDTASMLDEAINYVKFL 79 (169)
Q Consensus 44 ~kin~~~~~Lr~lvP~~~K~dkasiL~~aI~YIk~L 79 (169)
+-|-++|.+|+++||+..+.--.++...+..++|.+
T Consensus 49 ETl~ERi~ALkDm~Pp~~R~~i~~~~s~t~s~~ks~ 84 (145)
T TIGR00986 49 ETFTDRIYALKDIVPPTTRGWIYHKYSTTTNFVKST 84 (145)
T ss_pred CcHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 568889999999999654444444444444444444
No 32
>COG4710 Predicted DNA-binding protein with an HTH domain [General function prediction only]
Probab=33.71 E-value=1.8e+02 Score=20.72 Aligned_cols=32 Identities=25% Similarity=0.381 Sum_probs=20.9
Q ss_pred HHHHHHHHHhcCCCCCCCChhhHHHHHHH-HHHHHHH
Q 039972 46 ISDRFKILQSMVPGGTKMDTASMLDEAIN-YVKFLKA 81 (169)
Q Consensus 46 in~~~~~Lr~lvP~~~K~dkasiL~~aI~-YIk~Lq~ 81 (169)
+.+++..|..- ..-.||.++.+||+ ||..++.
T Consensus 16 ~~eRL~~Ls~~----tgrtkayyvrEaIE~~ieemED 48 (80)
T COG4710 16 LKERLDNLSKN----TGRTKAYYVREAIEAYIEEMED 48 (80)
T ss_pred HHHHHHHHHHh----cCCchhHHHHHHHHHHHHHHHH
Confidence 45556666542 23457999999997 6766655
No 33
>PLN02705 beta-amylase
Probab=30.73 E-value=67 Score=31.24 Aligned_cols=23 Identities=17% Similarity=0.335 Sum_probs=12.6
Q ss_pred cccHHHHHHHH---HHHHHHHHHHhc
Q 039972 34 PQSVAARQRRH---RISDRFKILQSM 56 (169)
Q Consensus 34 ~h~~~ER~RR~---kin~~~~~Lr~l 56 (169)
.....||+||. ||=..+..++.+
T Consensus 87 ~~~~rer~rrai~~ki~aglr~~g~~ 112 (681)
T PLN02705 87 RTKLRERHRRAITSRMLAGLRQYGNF 112 (681)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhccCC
Confidence 34567888874 444444444443
No 34
>PF04281 Tom22: Mitochondrial import receptor subunit Tom22 ; InterPro: IPR005683 The mitochondrial protein translocase family, which is responsible for movement of nuclear encoded pre-proteins into mitochondria, is very complex with at least 19 components. These proteins include several chaperone proteins, four proteins of the outer membrane translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family represents the Tom22 proteins []. The N-terminal region of Tom22 has been shown to have chaperone-like activity, and the C-terminal region faces the intermembrane face []. ; GO: 0006886 intracellular protein transport, 0005741 mitochondrial outer membrane
Probab=30.69 E-value=33 Score=26.83 Aligned_cols=21 Identities=14% Similarity=0.379 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHhcCCCCCC
Q 039972 42 RRHRISDRFKILQSMVPGGTK 62 (169)
Q Consensus 42 RR~kin~~~~~Lr~lvP~~~K 62 (169)
.-+-|-++|..|+++||...+
T Consensus 49 ~dETl~ERl~aLkdi~P~~~R 69 (137)
T PF04281_consen 49 EDETLLERLWALKDIFPPSVR 69 (137)
T ss_pred ccccHHHHHHHHhccCCHHHH
Confidence 456788899999999996433
No 35
>PF12180 EABR: TSG101 and ALIX binding domain of CEP55; InterPro: IPR022008 This domain family is found in eukaryotes, and is approximately 40 amino acids in length. This domain is the active domain of CEP55. CEP55 is a protein involved in cytokinesis, specifically in abscission of the plasma membrane at the midbody. To perform this function, CEP55 complexes with ESCRT-I (by a Proline rich sequence in its TSG101 domain) and ALIX. This is the domain on CEP55 which binds to both TSG101 and ALIX. It also acts as a hinge between the N and C termini. This domain is called EABR. ; PDB: 3E1R_A.
Probab=30.25 E-value=56 Score=19.89 Aligned_cols=13 Identities=31% Similarity=0.110 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHH
Q 039972 74 NYVKFLKAVIWFH 86 (169)
Q Consensus 74 ~YIk~Lq~~v~~L 86 (169)
+||+.|..++.+|
T Consensus 23 ~YV~~L~~rl~el 35 (35)
T PF12180_consen 23 AYVRGLLARLKEL 35 (35)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC
Confidence 6889998888765
No 36
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=27.18 E-value=1.2e+02 Score=20.92 Aligned_cols=24 Identities=13% Similarity=0.061 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 039972 68 MLDEAINYVKFLKAVIWFHENIIN 91 (169)
Q Consensus 68 iL~~aI~YIk~Lq~~v~~L~~~~~ 91 (169)
=+..||+-|..|+.+|+.|+....
T Consensus 12 ki~~aveti~~Lq~e~eeLke~n~ 35 (72)
T PF06005_consen 12 KIQQAVETIALLQMENEELKEKNN 35 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357789999999999988887543
No 37
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=27.08 E-value=1.2e+02 Score=21.67 Aligned_cols=27 Identities=19% Similarity=0.116 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039972 68 MLDEAINYVKFLKAVIWFHENIINFAD 94 (169)
Q Consensus 68 iL~~aI~YIk~Lq~~v~~L~~~~~~~~ 94 (169)
=+..|||-|.-||..|++|+.....+.
T Consensus 12 KIqqAvdtI~LLqmEieELKekn~~L~ 38 (79)
T PRK15422 12 KVQQAIDTITLLQMEIEELKEKNNSLS 38 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357799999999999999887655543
No 38
>PF00601 Flu_NS2: Influenza non-structural protein (NS2); InterPro: IPR000968 The Influenza A virus belongs to the class of ssRNA negative-strand viruses. Nonstructural protein 2 (NS2) may play a role in promoting normal replication of the genomic RNAs by preventing the replication of short-length RNA species []. NS1 and NS2 proteins are produced from the same gene by alternative splicing.; GO: 0006405 RNA export from nucleus, 0042025 host cell nucleus; PDB: 1PD3_B.
Probab=26.62 E-value=58 Score=23.92 Aligned_cols=56 Identities=14% Similarity=0.322 Sum_probs=28.2
Q ss_pred CcccHHHHHH--HHHHHHHHHHHHhcCCCC-CCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 039972 33 DPQSVAARQR--RHRISDRFKILQSMVPGG-TKMDTASMLDEAINYVKFLKAVIWFHEN 88 (169)
Q Consensus 33 ~~h~~~ER~R--R~kin~~~~~Lr~lvP~~-~K~dkasiL~~aI~YIk~Lq~~v~~L~~ 88 (169)
+-|...+|.+ |+.+..+|...|.+|--+ .++-..++.-+-|.++..||--++.-+.
T Consensus 27 D~h~lq~rn~~wreqL~qkfe~IrwlI~e~r~~l~~tensf~qItfmqaLqlLlEve~e 85 (94)
T PF00601_consen 27 DYHSLQSRNGKWREQLGQKFEEIRWLIEEHRHRLKITENSFEQITFMQALQLLLEVEQE 85 (94)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHHHC----TTSHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 5689889888 999999999999988754 3333344444556666666655544433
No 39
>PRK11020 hypothetical protein; Provisional
Probab=26.41 E-value=1.3e+02 Score=23.06 Aligned_cols=48 Identities=17% Similarity=0.129 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHhcCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 039972 43 RHRISDRFKILQSMVPGGTKMDTASMLDEAINYVKFLKAVIWFHENII 90 (169)
Q Consensus 43 R~kin~~~~~Lr~lvP~~~K~dkasiL~~aI~YIk~Lq~~v~~L~~~~ 90 (169)
=.++|++++.++.=+......+.+.++.+--+=|..|..+|..|....
T Consensus 7 iq~L~drLD~~~~Klaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~~ 54 (118)
T PRK11020 7 IKRLSDRLDAIRHKLAAASLRGDAEKYAQFEKEKATLEAEIARLKEVQ 54 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888888888766665555666677667777777777776665433
No 40
>smart00338 BRLZ basic region leucin zipper.
Probab=26.31 E-value=94 Score=20.35 Aligned_cols=19 Identities=11% Similarity=-0.151 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 039972 73 INYVKFLKAVIWFHENIIN 91 (169)
Q Consensus 73 I~YIk~Lq~~v~~L~~~~~ 91 (169)
-.||..|+.+|..|+....
T Consensus 25 k~~~~~Le~~~~~L~~en~ 43 (65)
T smart00338 25 KAEIEELERKVEQLEAENE 43 (65)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455666665555554333
No 41
>PF03791 KNOX2: KNOX2 domain ; InterPro: IPR005541 The MEINOX region is comprised of two domains, KNOX1 and KNOX2. KNOX1 plays a role in suppressing target gene expression. KNOX2, essential for function, is thought to be necessary for homo-dimerization [].; GO: 0003677 DNA binding, 0005634 nucleus
Probab=25.16 E-value=1e+02 Score=20.28 Aligned_cols=19 Identities=11% Similarity=0.193 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 039972 68 MLDEAINYVKFLKAVIWFH 86 (169)
Q Consensus 68 iL~~aI~YIk~Lq~~v~~L 86 (169)
-+.+|+.+++.++.++..|
T Consensus 32 p~~EA~~f~~~ie~qL~~L 50 (52)
T PF03791_consen 32 PFQEAMEFCREIEQQLSSL 50 (52)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4568999999999988876
No 42
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=24.79 E-value=1.1e+02 Score=20.01 Aligned_cols=17 Identities=29% Similarity=0.423 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHh
Q 039972 39 ARQRRHRISDRFKILQS 55 (169)
Q Consensus 39 ER~RR~kin~~~~~Lr~ 55 (169)
-++-|.+-...+..|..
T Consensus 17 Ar~~R~RKk~~~~~Le~ 33 (64)
T PF00170_consen 17 ARRSRQRKKQYIEELEE 33 (64)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHH
Confidence 33344555555555543
No 43
>PHA02957 hypothetical protein; Provisional
Probab=24.55 E-value=30 Score=27.98 Aligned_cols=16 Identities=31% Similarity=0.625 Sum_probs=13.9
Q ss_pred ccCCcCccCCCCccCC
Q 039972 154 GEESETLMHLDGFMKY 169 (169)
Q Consensus 154 g~~~~~~~~~~~~~~~ 169 (169)
|+-+.|+|-.|+||||
T Consensus 78 gdpt~pimald~~h~~ 93 (206)
T PHA02957 78 GDPTAPIMALDAWHKN 93 (206)
T ss_pred CCCCCcEEehhhhccc
Confidence 5677899999999986
No 44
>KOG3042 consensus Panthothenate synthetase [Coenzyme transport and metabolism]
Probab=23.87 E-value=1.2e+02 Score=26.00 Aligned_cols=46 Identities=15% Similarity=0.288 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCChhhHHHHHHHHHHHHHHHH
Q 039972 37 VAARQRRHRISDRFKILQSMVPGGTKMDTASMLDEAINYVKFLKAVI 83 (169)
Q Consensus 37 ~~ER~RR~kin~~~~~Lr~lvP~~~K~dkasiL~~aI~YIk~Lq~~v 83 (169)
.-||++-..|-..++++..-|- +++.+.+.+++.++.|+-.-.-++
T Consensus 198 ~Eerkia~nlyr~Lk~a~~~i~-~G~~~~~elid~~~q~v~~~~f~~ 243 (283)
T KOG3042|consen 198 PEERKIAENLYRGLKAAENAIR-GGRLSRSELIDTVTQYVDSHDFKI 243 (283)
T ss_pred hHHHHhhHHHHHHHHHHHHHHh-cCCccHHHHHHHHHHHHhhccCcc
Confidence 4689999999999999988776 677899999999999876544444
No 45
>PRK15365 type III secretion system chaperone SseA; Provisional
Probab=23.47 E-value=1.5e+02 Score=22.23 Aligned_cols=43 Identities=16% Similarity=0.268 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhcCCCCC---CCChhhHHHHHHHHHHHHHHHHHHHH
Q 039972 45 RISDRFKILQSMVPGGT---KMDTASMLDEAINYVKFLKAVIWFHE 87 (169)
Q Consensus 45 kin~~~~~Lr~lvP~~~---K~dkasiL~~aI~YIk~Lq~~v~~L~ 87 (169)
+-.+.+..|-++.|.+- +..+.-++.....-.|.|+.+++.+-
T Consensus 48 kaRE~l~rLd~aFP~G~~~~~qE~~k~m~~i~~~FKQLEt~LKnln 93 (107)
T PRK15365 48 KSRETESILHNLFPQGVAGVNQEAEKDLKKIVSLFKQLEVRLKQLN 93 (107)
T ss_pred HHHHHHHHHHHHCcchhhHHhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33456777888888765 66677777777766677777776553
No 46
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=21.79 E-value=1.3e+02 Score=21.02 Aligned_cols=51 Identities=16% Similarity=0.133 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 039972 37 VAARQRRHRISDRFKILQSMVPGGTKMDTASMLDEAINYVKFLKAVIWFHEN 88 (169)
Q Consensus 37 ~~ER~RR~kin~~~~~Lr~lvP~~~K~dkasiL~~aI~YIk~Lq~~v~~L~~ 88 (169)
-.|+.=|..+...|..| +||+-..=--...+|..+-+-|..|+.+|..||+
T Consensus 28 e~e~~~r~~l~~~l~kl-dlVtREEFd~q~~~L~~~r~kl~~LEarl~~LE~ 78 (79)
T PF04380_consen 28 EIEKNIRARLQSALSKL-DLVTREEFDAQKAVLARTREKLEALEARLAALEA 78 (79)
T ss_pred HHHHHHHHHHHHHHHHC-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44555556665544442 2332111001466888899999999999998875
No 47
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=21.69 E-value=3.8e+02 Score=27.30 Aligned_cols=10 Identities=20% Similarity=0.604 Sum_probs=4.4
Q ss_pred ChhhHHHHHH
Q 039972 64 DTASMLDEAI 73 (169)
Q Consensus 64 dkasiL~~aI 73 (169)
|-+.+++..|
T Consensus 455 d~~~liD~~v 464 (1102)
T KOG1924|consen 455 DLTELIDKMV 464 (1102)
T ss_pred cHHHHHHHHH
Confidence 3444444433
No 48
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=21.57 E-value=1.6e+02 Score=18.80 Aligned_cols=32 Identities=6% Similarity=-0.188 Sum_probs=23.2
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039972 62 KMDTASMLDEAINYVKFLKAVIWFHENIINFA 93 (169)
Q Consensus 62 K~dkasiL~~aI~YIk~Lq~~v~~L~~~~~~~ 93 (169)
..+.+.+.+-.-+.++.|+++++.|+.....+
T Consensus 31 ~~~~~~~~~~l~~~~~~i~~~i~~L~~~~~~L 62 (65)
T PF09278_consen 31 DPPCADRRALLEEKLEEIEEQIAELQALRAQL 62 (65)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445666777788888889998888766654
No 49
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=21.55 E-value=1.3e+02 Score=19.38 Aligned_cols=13 Identities=8% Similarity=-0.041 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHH
Q 039972 77 KFLKAVIWFHENI 89 (169)
Q Consensus 77 k~Lq~~v~~L~~~ 89 (169)
..|++||..|+..
T Consensus 2 ~aLrqQv~aL~~q 14 (46)
T PF09006_consen 2 NALRQQVEALQGQ 14 (46)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 3444555444443
No 50
>COG3416 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.48 E-value=3.9e+02 Score=22.68 Aligned_cols=23 Identities=17% Similarity=0.196 Sum_probs=12.6
Q ss_pred hhHHHHHH----HHHHHHHHHHHHHHH
Q 039972 66 ASMLDEAI----NYVKFLKAVIWFHEN 88 (169)
Q Consensus 66 asiL~~aI----~YIk~Lq~~v~~L~~ 88 (169)
+.|++.|+ ..|++||.+|+.|+.
T Consensus 50 vliqE~ALk~a~~~i~eLe~ri~~lq~ 76 (233)
T COG3416 50 VLIQEQALKKASTQIKELEKRIAILQA 76 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44444444 356666666666654
No 51
>PF10465 Inhibitor_I24: PinA peptidase inhibitor ; InterPro: IPR019506 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. PinA inhibits the endopeptidase La. It binds to the La homotetramer but does not interfere with the ATP binding site or the active site of La.
Probab=20.34 E-value=87 Score=24.40 Aligned_cols=19 Identities=16% Similarity=0.581 Sum_probs=16.3
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 039972 65 TASMLDEAINYVKFLKAVI 83 (169)
Q Consensus 65 kasiL~~aI~YIk~Lq~~v 83 (169)
--.+.+.|.+||..|+.|+
T Consensus 121 EgnLMQAAAeYIewLE~ql 139 (140)
T PF10465_consen 121 EGNLMQAAAEYIEWLETQL 139 (140)
T ss_pred hhhHHHHHHHHHHHHHhhc
Confidence 3568899999999999886
No 52
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=20.20 E-value=2.5e+02 Score=28.58 Aligned_cols=8 Identities=13% Similarity=0.277 Sum_probs=3.1
Q ss_pred ccccCCcC
Q 039972 152 FQGEESET 159 (169)
Q Consensus 152 ~~g~~~~~ 159 (169)
.+|--.||
T Consensus 592 ~Gg~ppPP 599 (1102)
T KOG1924|consen 592 LGGPPPPP 599 (1102)
T ss_pred CCCCCCCC
Confidence 34433333
No 53
>PRK14069 exodeoxyribonuclease VII small subunit; Provisional
Probab=20.09 E-value=3.6e+02 Score=19.77 Aligned_cols=62 Identities=10% Similarity=0.158 Sum_probs=40.1
Q ss_pred HHHHHHHHHhcCCC----CCCCCh-hhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCcCC
Q 039972 46 ISDRFKILQSMVPG----GTKMDT-ASMLDEAINYVKFLKAVIWFHENIINFADHHHHEHDPPVAFG 107 (169)
Q Consensus 46 in~~~~~Lr~lvP~----~~K~dk-asiL~~aI~YIk~Lq~~v~~L~~~~~~~~~~~~~~~p~~~~~ 107 (169)
+.+.|..|..||-. .-.++. ....+++++.|++.+.+++.-+.....+.....+..+...|.
T Consensus 10 FEeal~~LEeIV~~LEsgdl~LEesl~lyeeGv~L~k~C~~~L~~AE~kV~~L~~~~~~~~~~~~~~ 76 (95)
T PRK14069 10 FEDALRELEQIAEKLERQDFSLEESLKAYERGMELKKICSGILDDAEGKIEALTKDESGKTNKTGFR 76 (95)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccccc
Confidence 34556666666642 233443 568899999999999999988887777654443333333333
Done!