Query 039972
Match_columns 169
No_of_seqs 195 out of 1002
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 05:36:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039972.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039972hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 99.7 6.8E-18 2.3E-22 119.5 7.1 62 33-94 8-70 (82)
2 4ati_A MITF, microphthalmia-as 99.7 1.4E-16 4.7E-21 119.9 7.6 60 31-90 27-90 (118)
3 4h10_B Circadian locomoter out 99.7 1E-16 3.4E-21 111.1 5.8 56 32-87 9-65 (71)
4 1a0a_A BHLH, protein (phosphat 99.6 3.6E-17 1.2E-21 110.8 2.8 53 32-84 3-62 (63)
5 1an4_A Protein (upstream stimu 99.6 5E-17 1.7E-21 110.0 3.1 52 32-83 6-63 (65)
6 1hlo_A Protein (transcription 99.6 8.2E-16 2.8E-20 108.0 6.5 61 33-93 14-76 (80)
7 1nkp_B MAX protein, MYC proto- 99.6 1.1E-15 3.7E-20 108.0 7.0 61 33-93 4-66 (83)
8 4h10_A ARYL hydrocarbon recept 99.6 1.1E-16 3.9E-21 111.3 1.8 51 31-81 9-63 (73)
9 1nkp_A C-MYC, MYC proto-oncoge 99.6 2.7E-15 9.2E-20 107.6 7.1 58 33-90 8-68 (88)
10 1nlw_A MAD protein, MAX dimeri 99.5 3.8E-14 1.3E-18 100.0 8.0 61 33-93 3-66 (80)
11 3u5v_A Protein MAX, transcript 99.5 9E-15 3.1E-19 102.4 4.2 57 32-88 6-66 (76)
12 1mdy_A Protein (MYOD BHLH doma 99.3 6.5E-12 2.2E-16 86.1 5.6 51 33-83 14-66 (68)
13 2ql2_B Neurod1, neurogenic dif 99.2 1.3E-11 4.4E-16 82.7 5.6 51 34-84 5-58 (60)
14 4f3l_A Mclock, circadian locom 99.2 2.2E-11 7.5E-16 104.5 5.7 51 32-82 13-64 (361)
15 4f3l_B BMAL1B; BHLH, PAS, circ 99.0 7E-11 2.4E-15 102.6 2.9 51 32-82 14-68 (387)
16 2lfh_A DNA-binding protein inh 98.9 4.8E-10 1.6E-14 76.8 1.9 44 38-81 21-67 (68)
17 4ath_A MITF, microphthalmia-as 98.8 6.1E-09 2.1E-13 73.8 6.6 45 43-87 4-52 (83)
18 4aya_A DNA-binding protein inh 98.4 4E-07 1.4E-11 66.2 6.6 48 39-86 33-83 (97)
19 1pyi_A Protein (pyrimidine pat 84.2 2.9 9.9E-05 28.4 6.1 25 73-97 47-71 (96)
20 3fx7_A Putative uncharacterize 63.8 16 0.00053 25.9 5.4 22 67-88 63-84 (94)
21 2wt7_A Proto-oncogene protein 63.7 24 0.00082 22.6 6.0 38 39-89 1-38 (63)
22 3muj_A Transcription factor CO 55.9 17 0.00057 27.5 4.7 35 45-79 95-133 (138)
23 2er8_A Regulatory protein Leu3 49.0 12 0.00042 23.8 2.7 21 73-93 48-68 (72)
24 1zme_C Proline utilization tra 46.3 14 0.00048 23.2 2.6 21 74-94 44-64 (70)
25 1xkm_B Distinctin chain B; por 43.6 28 0.00097 18.6 3.0 20 66-85 3-22 (26)
26 1dh3_A Transcription factor CR 43.4 23 0.00079 22.3 3.2 20 74-93 22-41 (55)
27 1hwt_C Protein (heme activator 43.0 11 0.00039 24.4 1.8 21 73-93 57-77 (81)
28 3he4_B Synzip5; heterodimeric 41.1 43 0.0015 20.1 3.9 23 69-91 5-27 (46)
29 2l5g_A GPS2 protein, G protein 40.5 56 0.0019 19.3 4.4 30 63-92 4-33 (38)
30 1gd2_E Transcription factor PA 40.2 26 0.00089 23.3 3.2 18 71-88 26-43 (70)
31 1pd7_B MAD1; PAH2, SIN3, eukar 36.6 46 0.0016 18.1 3.2 19 63-81 2-20 (26)
32 2jee_A YIIU; FTSZ, septum, coi 33.9 54 0.0018 22.5 4.1 26 68-93 14-39 (81)
33 2oqq_A Transcription factor HY 33.6 42 0.0014 20.3 3.0 14 75-88 4-17 (42)
34 3coq_A Regulatory protein GAL4 33.4 42 0.0014 21.9 3.5 23 73-95 44-66 (89)
35 1m2x_A Class B carbapenemase B 29.4 53 0.0018 24.6 3.9 30 55-85 191-221 (223)
36 1p3q_Q VPS9P, vacuolar protein 28.3 49 0.0017 21.0 2.9 25 37-61 3-27 (54)
37 2dgc_A Protein (GCN4); basic d 27.1 59 0.002 20.9 3.2 22 72-93 28-49 (63)
38 3k29_A Putative uncharacterize 26.3 84 0.0029 24.4 4.5 39 47-88 54-92 (169)
39 2lf0_A Uncharacterized protein 24.2 1.2E+02 0.0042 22.3 4.8 53 39-91 8-60 (123)
40 1d66_A Protein (GAL4); protein 24.2 20 0.00068 22.1 0.4 15 73-87 51-65 (66)
41 2fhx_A SPM-1; metallo-beta-lac 24.0 37 0.0013 25.7 2.1 30 55-84 216-245 (246)
42 1jnm_A Proto-oncogene C-JUN; B 23.3 77 0.0026 19.9 3.2 14 74-87 22-35 (62)
43 1a7t_A Metallo-beta-lactamase; 22.7 65 0.0022 24.3 3.3 30 55-84 201-230 (232)
44 1t2k_D Cyclic-AMP-dependent tr 21.1 91 0.0031 19.5 3.2 15 74-88 22-36 (61)
45 1f1f_A Cytochrome C6; heme, pr 20.9 1.6E+02 0.0054 18.2 4.8 39 43-82 48-87 (89)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.72 E-value=6.8e-18 Score=119.53 Aligned_cols=62 Identities=21% Similarity=0.333 Sum_probs=57.4
Q ss_pred CcccHHHHHHHHHHHHHHHHHHhcCCCC-CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039972 33 DPQSVAARQRRHRISDRFKILQSMVPGG-TKMDTASMLDEAINYVKFLKAVIWFHENIINFAD 94 (169)
Q Consensus 33 ~~h~~~ER~RR~kin~~~~~Lr~lvP~~-~K~dkasiL~~aI~YIk~Lq~~v~~L~~~~~~~~ 94 (169)
..|+.+||+||++||++|..|++|||++ .|+|||+||++||+||++|+.+++.|+.....+.
T Consensus 8 ~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~ 70 (82)
T 1am9_A 8 TAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLR 70 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999999999997 9999999999999999999999999988666553
No 2
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.66 E-value=1.4e-16 Score=119.91 Aligned_cols=60 Identities=22% Similarity=0.462 Sum_probs=52.2
Q ss_pred CCCcccHHHHHHHHHHHHHHHHHHhcCCCC----CCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 039972 31 STDPQSVAARQRRHRISDRFKILQSMVPGG----TKMDTASMLDEAINYVKFLKAVIWFHENII 90 (169)
Q Consensus 31 ~~~~h~~~ER~RR~kin~~~~~Lr~lvP~~----~K~dkasiL~~aI~YIk~Lq~~v~~L~~~~ 90 (169)
.+..|+.+||+||++||++|..|++|||++ .|++||+||+.||+||++|+.+++.|+...
T Consensus 27 kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~ 90 (118)
T 4ati_A 27 KKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLE 90 (118)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445799999999999999999999999986 378899999999999999999999987643
No 3
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.66 E-value=1e-16 Score=111.10 Aligned_cols=56 Identities=27% Similarity=0.479 Sum_probs=51.6
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHhcCCCC-CCCChhhHHHHHHHHHHHHHHHHHHHH
Q 039972 32 TDPQSVAARQRRHRISDRFKILQSMVPGG-TKMDTASMLDEAINYVKFLKAVIWFHE 87 (169)
Q Consensus 32 ~~~h~~~ER~RR~kin~~~~~Lr~lvP~~-~K~dkasiL~~aI~YIk~Lq~~v~~L~ 87 (169)
+.+|+.+||+||++||++|.+|++|||++ .|+||++||+.||+||+.|+.++.-|+
T Consensus 9 R~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 9 RVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 35799999999999999999999999974 799999999999999999999987664
No 4
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.65 E-value=3.6e-17 Score=110.76 Aligned_cols=53 Identities=21% Similarity=0.362 Sum_probs=48.1
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHhcCCCC-------CCCChhhHHHHHHHHHHHHHHHHH
Q 039972 32 TDPQSVAARQRRHRISDRFKILQSMVPGG-------TKMDTASMLDEAINYVKFLKAVIW 84 (169)
Q Consensus 32 ~~~h~~~ER~RR~kin~~~~~Lr~lvP~~-------~K~dkasiL~~aI~YIk~Lq~~v~ 84 (169)
+.+|..+||+||++||++|..|++|||++ .|++||+||+.||+||++||++|+
T Consensus 3 r~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~~ 62 (63)
T 1a0a_A 3 RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS 62 (63)
T ss_dssp TTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHhh
Confidence 45799999999999999999999999953 678899999999999999998763
No 5
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.64 E-value=5e-17 Score=109.98 Aligned_cols=52 Identities=19% Similarity=0.401 Sum_probs=48.0
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHhcCCCCC------CCChhhHHHHHHHHHHHHHHHH
Q 039972 32 TDPQSVAARQRRHRISDRFKILQSMVPGGT------KMDTASMLDEAINYVKFLKAVI 83 (169)
Q Consensus 32 ~~~h~~~ER~RR~kin~~~~~Lr~lvP~~~------K~dkasiL~~aI~YIk~Lq~~v 83 (169)
+..|+.+||+||++||++|..|++|||.+. |+|||+||+.||+||++|+++.
T Consensus 6 r~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~ 63 (65)
T 1an4_A 6 RAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN 63 (65)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred HHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 457999999999999999999999999864 7899999999999999999764
No 6
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.61 E-value=8.2e-16 Score=108.03 Aligned_cols=61 Identities=28% Similarity=0.452 Sum_probs=56.5
Q ss_pred CcccHHHHHHHHHHHHHHHHHHhcCCCC--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039972 33 DPQSVAARQRRHRISDRFKILQSMVPGG--TKMDTASMLDEAINYVKFLKAVIWFHENIINFA 93 (169)
Q Consensus 33 ~~h~~~ER~RR~kin~~~~~Lr~lvP~~--~K~dkasiL~~aI~YIk~Lq~~v~~L~~~~~~~ 93 (169)
..|+..||+||.+||++|..|+++||.+ .|++|++||..||+||+.|+.+++.|+.....+
T Consensus 14 ~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L 76 (80)
T 1hlo_A 14 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDL 76 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999999999975 799999999999999999999999999876654
No 7
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.61 E-value=1.1e-15 Score=107.96 Aligned_cols=61 Identities=30% Similarity=0.512 Sum_probs=54.4
Q ss_pred CcccHHHHHHHHHHHHHHHHHHhcCCC--CCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039972 33 DPQSVAARQRRHRISDRFKILQSMVPG--GTKMDTASMLDEAINYVKFLKAVIWFHENIINFA 93 (169)
Q Consensus 33 ~~h~~~ER~RR~kin~~~~~Lr~lvP~--~~K~dkasiL~~aI~YIk~Lq~~v~~L~~~~~~~ 93 (169)
..|+..||+||++||++|..|+++||. +.|++|++||..||+||+.|+.+++.|+.....+
T Consensus 4 ~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L 66 (83)
T 1nkp_B 4 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDL 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 469999999999999999999999997 4899999999999999999999888777654443
No 8
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.61 E-value=1.1e-16 Score=111.31 Aligned_cols=51 Identities=25% Similarity=0.432 Sum_probs=47.0
Q ss_pred CCCcccHHHHHHHHHHHHHHHHHHhcCCCC----CCCChhhHHHHHHHHHHHHHH
Q 039972 31 STDPQSVAARQRRHRISDRFKILQSMVPGG----TKMDTASMLDEAINYVKFLKA 81 (169)
Q Consensus 31 ~~~~h~~~ER~RR~kin~~~~~Lr~lvP~~----~K~dkasiL~~aI~YIk~Lq~ 81 (169)
.+..|+.+||+||++||++|.+|++|||.| .|+|||+||+.||+||+.|+.
T Consensus 9 rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 9 AREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence 345799999999999999999999999975 799999999999999999974
No 9
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.58 E-value=2.7e-15 Score=107.56 Aligned_cols=58 Identities=22% Similarity=0.237 Sum_probs=52.3
Q ss_pred CcccHHHHHHHHHHHHHHHHHHhcCCCC---CCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 039972 33 DPQSVAARQRRHRISDRFKILQSMVPGG---TKMDTASMLDEAINYVKFLKAVIWFHENII 90 (169)
Q Consensus 33 ~~h~~~ER~RR~kin~~~~~Lr~lvP~~---~K~dkasiL~~aI~YIk~Lq~~v~~L~~~~ 90 (169)
..|+..||+||++||++|..|+++||.+ .|++|++||..||+||++|+.+.+.+....
T Consensus 8 ~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~ 68 (88)
T 1nkp_A 8 RTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEE 68 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3699999999999999999999999974 699999999999999999999987765543
No 10
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.51 E-value=3.8e-14 Score=100.00 Aligned_cols=61 Identities=20% Similarity=0.191 Sum_probs=54.1
Q ss_pred CcccHHHHHHHHHHHHHHHHHHhcCCC---CCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039972 33 DPQSVAARQRRHRISDRFKILQSMVPG---GTKMDTASMLDEAINYVKFLKAVIWFHENIINFA 93 (169)
Q Consensus 33 ~~h~~~ER~RR~kin~~~~~Lr~lvP~---~~K~dkasiL~~aI~YIk~Lq~~v~~L~~~~~~~ 93 (169)
..|+..||+||..||++|..|+++||. +.|.+|++||..|++||+.|+++.+.|....+.+
T Consensus 3 ~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L 66 (80)
T 1nlw_A 3 STHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQL 66 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 359999999999999999999999995 4789999999999999999999998777655443
No 11
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.51 E-value=9e-15 Score=102.39 Aligned_cols=57 Identities=19% Similarity=0.247 Sum_probs=49.5
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHhcCCC---CCCC-ChhhHHHHHHHHHHHHHHHHHHHHH
Q 039972 32 TDPQSVAARQRRHRISDRFKILQSMVPG---GTKM-DTASMLDEAINYVKFLKAVIWFHEN 88 (169)
Q Consensus 32 ~~~h~~~ER~RR~kin~~~~~Lr~lvP~---~~K~-dkasiL~~aI~YIk~Lq~~v~~L~~ 88 (169)
+..|+..||+||+.||++|..|+.+||. +.|. +|++||..||+||++|++++++++.
T Consensus 6 R~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~~ 66 (76)
T 3u5v_A 6 RAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERNL 66 (76)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3569999999999999999999999994 4555 7999999999999999999998763
No 12
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.26 E-value=6.5e-12 Score=86.11 Aligned_cols=51 Identities=20% Similarity=0.468 Sum_probs=47.4
Q ss_pred CcccHHHHHHHHHHHHHHHHHHhcCCC--CCCCChhhHHHHHHHHHHHHHHHH
Q 039972 33 DPQSVAARQRRHRISDRFKILQSMVPG--GTKMDTASMLDEAINYVKFLKAVI 83 (169)
Q Consensus 33 ~~h~~~ER~RR~kin~~~~~Lr~lvP~--~~K~dkasiL~~aI~YIk~Lq~~v 83 (169)
..|+..||+|+..||+.|..|+++||. ..|++|+.||..||+||.+|++.+
T Consensus 14 ~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L 66 (68)
T 1mdy_A 14 KAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALL 66 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 358999999999999999999999996 489999999999999999999865
No 13
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=99.23 E-value=1.3e-11 Score=82.67 Aligned_cols=51 Identities=24% Similarity=0.358 Sum_probs=47.0
Q ss_pred cccHHHHHHHHHHHHHHHHHHhcCCC---CCCCChhhHHHHHHHHHHHHHHHHH
Q 039972 34 PQSVAARQRRHRISDRFKILQSMVPG---GTKMDTASMLDEAINYVKFLKAVIW 84 (169)
Q Consensus 34 ~h~~~ER~RR~kin~~~~~Lr~lvP~---~~K~dkasiL~~aI~YIk~Lq~~v~ 84 (169)
.|+..||+|+..||+.|..||.+||. ..|++|+.+|..||+||.+|++.++
T Consensus 5 ~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 5 KANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 47889999999999999999999996 4799999999999999999998764
No 14
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.17 E-value=2.2e-11 Score=104.49 Aligned_cols=51 Identities=25% Similarity=0.458 Sum_probs=42.7
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHhcCC-CCCCCChhhHHHHHHHHHHHHHHH
Q 039972 32 TDPQSVAARQRRHRISDRFKILQSMVP-GGTKMDTASMLDEAINYVKFLKAV 82 (169)
Q Consensus 32 ~~~h~~~ER~RR~kin~~~~~Lr~lvP-~~~K~dkasiL~~aI~YIk~Lq~~ 82 (169)
+.+|+.+||+||++||+.|.+|++||| ...|+||++||..||+||+.|+..
T Consensus 13 ~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~ 64 (361)
T 4f3l_A 13 RVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKET 64 (361)
T ss_dssp ------CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhh
Confidence 356999999999999999999999999 468999999999999999999864
No 15
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.03 E-value=7e-11 Score=102.60 Aligned_cols=51 Identities=25% Similarity=0.425 Sum_probs=47.2
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHhcCC----CCCCCChhhHHHHHHHHHHHHHHH
Q 039972 32 TDPQSVAARQRRHRISDRFKILQSMVP----GGTKMDTASMLDEAINYVKFLKAV 82 (169)
Q Consensus 32 ~~~h~~~ER~RR~kin~~~~~Lr~lvP----~~~K~dkasiL~~aI~YIk~Lq~~ 82 (169)
+.+|+.+||+||++||+.|..|+.||| ...|+||++||..||+|||.|+..
T Consensus 14 ~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~~ 68 (387)
T 4f3l_B 14 REAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGA 68 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHCC
T ss_pred cccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhcc
Confidence 457999999999999999999999999 568999999999999999999853
No 16
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.88 E-value=4.8e-10 Score=76.78 Aligned_cols=44 Identities=23% Similarity=0.476 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCC---CCCCChhhHHHHHHHHHHHHHH
Q 039972 38 AARQRRHRISDRFKILQSMVPG---GTKMDTASMLDEAINYVKFLKA 81 (169)
Q Consensus 38 ~ER~RR~kin~~~~~Lr~lvP~---~~K~dkasiL~~aI~YIk~Lq~ 81 (169)
-||+|+..||+.|..||.+||. ..|++|..+|..||+||..||.
T Consensus 21 rER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 21 EPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 3888999999999999999996 4899999999999999999984
No 17
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.84 E-value=6.1e-09 Score=73.83 Aligned_cols=45 Identities=22% Similarity=0.465 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHhcCCCC----CCCChhhHHHHHHHHHHHHHHHHHHHH
Q 039972 43 RHRISDRFKILQSMVPGG----TKMDTASMLDEAINYVKFLKAVIWFHE 87 (169)
Q Consensus 43 R~kin~~~~~Lr~lvP~~----~K~dkasiL~~aI~YIk~Lq~~v~~L~ 87 (169)
|..||++|..|..|||.+ .|.+|++||..|||||++||+.++.+.
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~ 52 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAK 52 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999964 579999999999999999988765443
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=98.44 E-value=4e-07 Score=66.23 Aligned_cols=48 Identities=21% Similarity=0.354 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCC---CCCCChhhHHHHHHHHHHHHHHHHHHH
Q 039972 39 ARQRRHRISDRFKILQSMVPG---GTKMDTASMLDEAINYVKFLKAVIWFH 86 (169)
Q Consensus 39 ER~RR~kin~~~~~Lr~lvP~---~~K~dkasiL~~aI~YIk~Lq~~v~~L 86 (169)
||.|=..||+.|..||.+||. ..|++|..+|..||+||..|++.++..
T Consensus 33 ~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~~ 83 (97)
T 4aya_A 33 PMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDSH 83 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhcC
Confidence 466778899999999999995 479999999999999999999988653
No 19
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=84.19 E-value=2.9 Score=28.38 Aligned_cols=25 Identities=16% Similarity=0.143 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCC
Q 039972 73 INYVKFLKAVIWFHENIINFADHHH 97 (169)
Q Consensus 73 I~YIk~Lq~~v~~L~~~~~~~~~~~ 97 (169)
-.||..|+++|+.||.....+....
T Consensus 47 ~~~~~~Le~rl~~le~~l~~~~~~~ 71 (96)
T 1pyi_A 47 RSYVFFLEDRLAVMMRVLKEYGVDP 71 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 4599999999999998877765544
No 20
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=63.76 E-value=16 Score=25.94 Aligned_cols=22 Identities=23% Similarity=0.256 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 039972 67 SMLDEAINYVKFLKAVIWFHEN 88 (169)
Q Consensus 67 siL~~aI~YIk~Lq~~v~~L~~ 88 (169)
-..+.|=+||.+|.++|+.|+.
T Consensus 63 ~f~e~a~e~vp~L~~~i~vle~ 84 (94)
T 3fx7_A 63 EFDEAAQEQIAWLKERIRVLEE 84 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHhHHHHHHHHHhHH
Confidence 3556788999999999999985
No 21
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=63.72 E-value=24 Score=22.60 Aligned_cols=38 Identities=13% Similarity=0.090 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 039972 39 ARQRRHRISDRFKILQSMVPGGTKMDTASMLDEAINYVKFLKAVIWFHENI 89 (169)
Q Consensus 39 ER~RR~kin~~~~~Lr~lvP~~~K~dkasiL~~aI~YIk~Lq~~v~~L~~~ 89 (169)
||++|.+...++.+.++ =..-.+|+..|+.+|+.|+..
T Consensus 1 Ekr~rrrerNR~AA~rc-------------R~rKk~~~~~Le~~v~~L~~~ 38 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKC-------------RNRRRELTDTLQAETDQLEDE 38 (63)
T ss_dssp CHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666666654 123345555555555555543
No 22
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=55.89 E-value=17 Score=27.53 Aligned_cols=35 Identities=26% Similarity=0.427 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhcCCC----CCCCChhhHHHHHHHHHHHH
Q 039972 45 RISDRFKILQSMVPG----GTKMDTASMLDEAINYVKFL 79 (169)
Q Consensus 45 kin~~~~~Lr~lvP~----~~K~dkasiL~~aI~YIk~L 79 (169)
.|.-.|..|+.+||. -.++-|-.||..|.|++..|
T Consensus 95 tId~gfqrl~k~~pr~pgdpe~lpk~~~lkraa~l~e~~ 133 (138)
T 3muj_A 95 TIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEAL 133 (138)
T ss_dssp CHHHHHHHHHHHSCCCTTCCSSCCHHHHHHHHHHHHHHH
T ss_pred ccccchhhhccccCCCCCChhhhhHHHHHHHHHHHHHHH
Confidence 478899999999995 37788999999999998766
No 23
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=48.98 E-value=12 Score=23.79 Aligned_cols=21 Identities=0% Similarity=-0.249 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 039972 73 INYVKFLKAVIWFHENIINFA 93 (169)
Q Consensus 73 I~YIk~Lq~~v~~L~~~~~~~ 93 (169)
-.||..|+++|+.|+.....+
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l 68 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999876654
No 24
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=46.26 E-value=14 Score=23.24 Aligned_cols=21 Identities=14% Similarity=0.034 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q 039972 74 NYVKFLKAVIWFHENIINFAD 94 (169)
Q Consensus 74 ~YIk~Lq~~v~~L~~~~~~~~ 94 (169)
.||..|+.+|+.|+.....+.
T Consensus 44 ~~~~~L~~ri~~Le~~l~~l~ 64 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNRLK 64 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 477777777777776655553
No 25
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=43.60 E-value=28 Score=18.58 Aligned_cols=20 Identities=30% Similarity=0.170 Sum_probs=15.4
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 039972 66 ASMLDEAINYVKFLKAVIWF 85 (169)
Q Consensus 66 asiL~~aI~YIk~Lq~~v~~ 85 (169)
.+-|-+|-.|+.+|+.+++.
T Consensus 3 vsgliearkyleqlhrklkn 22 (26)
T 1xkm_B 3 VSGLIEARKYLEQLHRKLKN 22 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhc
Confidence 45677889999999887753
No 26
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=43.41 E-value=23 Score=22.26 Aligned_cols=20 Identities=30% Similarity=0.222 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 039972 74 NYVKFLKAVIWFHENIINFA 93 (169)
Q Consensus 74 ~YIk~Lq~~v~~L~~~~~~~ 93 (169)
.||..|+.+|..|+.....+
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L 41 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTL 41 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 68888888888777655444
No 27
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=43.02 E-value=11 Score=24.41 Aligned_cols=21 Identities=19% Similarity=0.049 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 039972 73 INYVKFLKAVIWFHENIINFA 93 (169)
Q Consensus 73 I~YIk~Lq~~v~~L~~~~~~~ 93 (169)
-.||..|+++|..||.....+
T Consensus 57 ~~~~~~L~~ri~~LE~~l~~l 77 (81)
T 1hwt_C 57 DNELKKLRERVKSLEKTLSKV 77 (81)
T ss_dssp HHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 479999999999999765544
No 28
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=41.12 E-value=43 Score=20.10 Aligned_cols=23 Identities=22% Similarity=0.183 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 039972 69 LDEAINYVKFLKAVIWFHENIIN 91 (169)
Q Consensus 69 L~~aI~YIk~Lq~~v~~L~~~~~ 91 (169)
+.+--+||++|+++-.+|...++
T Consensus 5 vkelknyiqeleernaelknlke 27 (46)
T 3he4_B 5 VKELKNYIQELEERNAELKNLKE 27 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHhHHH
Confidence 45667899999998877765444
No 29
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=40.53 E-value=56 Score=19.31 Aligned_cols=30 Identities=13% Similarity=0.080 Sum_probs=25.4
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039972 63 MDTASMLDEAINYVKFLKAVIWFHENIINF 92 (169)
Q Consensus 63 ~dkasiL~~aI~YIk~Lq~~v~~L~~~~~~ 92 (169)
+..+..|+++-+-|..|+.+++.|+..+..
T Consensus 4 ~ee~mTLeEtkeQi~~l~~kl~~LkeEKHQ 33 (38)
T 2l5g_A 4 MEERMSLEETKEQILKLEEKLLALQEEKHQ 33 (38)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999999999999876654
No 30
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=40.17 E-value=26 Score=23.30 Aligned_cols=18 Identities=11% Similarity=0.054 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 039972 71 EAINYVKFLKAVIWFHEN 88 (169)
Q Consensus 71 ~aI~YIk~Lq~~v~~L~~ 88 (169)
.--.||+.|+.+|..|+.
T Consensus 26 RK~~~i~~LE~~v~~le~ 43 (70)
T 1gd2_E 26 RKEDHLKALETQVVTLKE 43 (70)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345677777777777764
No 31
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=36.55 E-value=46 Score=18.13 Aligned_cols=19 Identities=26% Similarity=0.228 Sum_probs=14.9
Q ss_pred CChhhHHHHHHHHHHHHHH
Q 039972 63 MDTASMLDEAINYVKFLKA 81 (169)
Q Consensus 63 ~dkasiL~~aI~YIk~Lq~ 81 (169)
++..-+|-+|.+|+...+.
T Consensus 2 ~~nvq~LLeAAeyLErrEr 20 (26)
T 1pd7_B 2 RMNIQMLLEAADYLERRER 20 (26)
T ss_dssp CCSTHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHH
Confidence 4567788899999987665
No 32
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=33.91 E-value=54 Score=22.50 Aligned_cols=26 Identities=19% Similarity=0.114 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039972 68 MLDEAINYVKFLKAVIWFHENIINFA 93 (169)
Q Consensus 68 iL~~aI~YIk~Lq~~v~~L~~~~~~~ 93 (169)
=+..||+-|.-||..|++|+.....+
T Consensus 14 KIq~avdtI~lLqmEieELKekN~~L 39 (81)
T 2jee_A 14 KVQQAIDTITLLQMEIEELKEKNNSL 39 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36789999999999998888765543
No 33
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=33.65 E-value=42 Score=20.34 Aligned_cols=14 Identities=29% Similarity=0.223 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHH
Q 039972 75 YVKFLKAVIWFHEN 88 (169)
Q Consensus 75 YIk~Lq~~v~~L~~ 88 (169)
|+-.|+.+++.|+.
T Consensus 4 Yl~eLE~r~k~le~ 17 (42)
T 2oqq_A 4 YLSELENRVKDLEN 17 (42)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 66666666655554
No 34
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=33.44 E-value=42 Score=21.86 Aligned_cols=23 Identities=4% Similarity=-0.152 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Q 039972 73 INYVKFLKAVIWFHENIINFADH 95 (169)
Q Consensus 73 I~YIk~Lq~~v~~L~~~~~~~~~ 95 (169)
..||..|+++|+.||.....+..
T Consensus 44 ~~~~~~L~~r~~~le~~l~~l~~ 66 (89)
T 3coq_A 44 RAHLTEVESRLERLEQLFLLIFP 66 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC
Confidence 46899999999999987777643
No 35
>1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold., hydrolase; HET: MCO; 1.50A {Elizabethkingia meningoseptica} SCOP: d.157.1.1
Probab=29.41 E-value=53 Score=24.56 Aligned_cols=30 Identities=7% Similarity=0.058 Sum_probs=21.2
Q ss_pred hcCCC-CCCCChhhHHHHHHHHHHHHHHHHHH
Q 039972 55 SMVPG-GTKMDTASMLDEAINYVKFLKAVIWF 85 (169)
Q Consensus 55 ~lvP~-~~K~dkasiL~~aI~YIk~Lq~~v~~ 85 (169)
.++|+ +... ....|+.+++|++.++++|++
T Consensus 191 ~i~pgHg~~~-~~~~l~~~~~~l~~~~~~~~~ 221 (223)
T 1m2x_A 191 YVVAGHDDWK-DQRSIQHTLDLINEYQQKQKA 221 (223)
T ss_dssp EEEESBSCCC-STTHHHHHHHHHHHHHHTC--
T ss_pred EEEeCCCCcC-CHHHHHHHHHHHHHHHHHHhc
Confidence 35665 3344 467899999999999998854
No 36
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=28.34 E-value=49 Score=20.98 Aligned_cols=25 Identities=20% Similarity=0.327 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCC
Q 039972 37 VAARQRRHRISDRFKILQSMVPGGT 61 (169)
Q Consensus 37 ~~ER~RR~kin~~~~~Lr~lvP~~~ 61 (169)
.++|-+|...++-+..|+.+.|+..
T Consensus 3 ~a~~i~~~e~~~~~~~L~~MFP~lD 27 (54)
T 1p3q_Q 3 LIKKIEENERKDTLNTLQNMFPDMD 27 (54)
T ss_dssp THHHHHHHHHHHHHHHHHHHSTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHcccCC
Confidence 4788899999999999999999744
No 37
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=27.05 E-value=59 Score=20.85 Aligned_cols=22 Identities=9% Similarity=-0.145 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 039972 72 AINYVKFLKAVIWFHENIINFA 93 (169)
Q Consensus 72 aI~YIk~Lq~~v~~L~~~~~~~ 93 (169)
-.+|+..|+.+|+.|+.....+
T Consensus 28 K~~~~~~Le~~v~~L~~eN~~L 49 (63)
T 2dgc_A 28 KLQRMKQLEDKVEELLSKNYHL 49 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4466777777776666544433
No 38
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=26.30 E-value=84 Score=24.40 Aligned_cols=39 Identities=18% Similarity=0.283 Sum_probs=27.7
Q ss_pred HHHHHHHHhcCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 039972 47 SDRFKILQSMVPGGTKMDTASMLDEAINYVKFLKAVIWFHEN 88 (169)
Q Consensus 47 n~~~~~Lr~lvP~~~K~dkasiL~~aI~YIk~Lq~~v~~L~~ 88 (169)
.+++..|+..+-.|+-.|+..+. =.||+-|+++...++.
T Consensus 54 ~~k~~qlre~~d~gtt~~~i~~m---~~yI~llrErea~lEq 92 (169)
T 3k29_A 54 MQKIRQLREQLDDGTTSDAILKM---KAYIKVVAIQLSEEEE 92 (169)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcHHHHHH---HHHHHHHHHHHHHHHH
Confidence 45688999987766666665544 4688888888766654
No 39
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=24.19 E-value=1.2e+02 Score=22.27 Aligned_cols=53 Identities=17% Similarity=0.150 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 039972 39 ARQRRHRISDRFKILQSMVPGGTKMDTASMLDEAINYVKFLKAVIWFHENIIN 91 (169)
Q Consensus 39 ER~RR~kin~~~~~Lr~lvP~~~K~dkasiL~~aI~YIk~Lq~~v~~L~~~~~ 91 (169)
|+.==.+++++++.++.=+......+.+.++.+--+=|..|..+|..|.....
T Consensus 8 ~K~Eiq~L~drLD~~~rKlaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~q~ 60 (123)
T 2lf0_A 8 EKNEIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIARLREVHS 60 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCTTTCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444678899999888777766666777777777888888888877765443
No 40
>1d66_A Protein (GAL4); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.70A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1aw6_A
Probab=24.18 E-value=20 Score=22.13 Aligned_cols=15 Identities=7% Similarity=-0.170 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHH
Q 039972 73 INYVKFLKAVIWFHE 87 (169)
Q Consensus 73 I~YIk~Lq~~v~~L~ 87 (169)
..||..|+++|+.||
T Consensus 51 ~~~~~~Le~rl~~LE 65 (66)
T 1d66_A 51 RAHLTEVESRLERLE 65 (66)
T ss_dssp HHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHc
Confidence 579999999998776
No 41
>2fhx_A SPM-1; metallo-beta-lactamase, dinuclear zinc, antibiotic resistanc hydrolase, metal binding protein; 1.90A {Pseudomonas aeruginosa}
Probab=23.97 E-value=37 Score=25.72 Aligned_cols=30 Identities=13% Similarity=0.254 Sum_probs=21.6
Q ss_pred hcCCCCCCCChhhHHHHHHHHHHHHHHHHH
Q 039972 55 SMVPGGTKMDTASMLDEAINYVKFLKAVIW 84 (169)
Q Consensus 55 ~lvP~~~K~dkasiL~~aI~YIk~Lq~~v~ 84 (169)
.++|+-...-....|.++++|++.|.++|+
T Consensus 216 ~i~pgHg~~~~~~~l~~~~~~l~~l~~~v~ 245 (246)
T 2fhx_A 216 IVIPGHGEWGGPEMVNKTIKVAEKAVGEMR 245 (246)
T ss_dssp EEEESBSCCBSTHHHHHHHHHHHHHHHHHT
T ss_pred EEECCCCCcCCHHHHHHHHHHHHHHHHHhc
Confidence 355653223336789999999999998874
No 42
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=23.30 E-value=77 Score=19.93 Aligned_cols=14 Identities=7% Similarity=-0.026 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q 039972 74 NYVKFLKAVIWFHE 87 (169)
Q Consensus 74 ~YIk~Lq~~v~~L~ 87 (169)
+||..|+.+|..|+
T Consensus 22 ~~~~~Le~~v~~L~ 35 (62)
T 1jnm_A 22 ERIARLEEKVKTLK 35 (62)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444433
No 43
>1a7t_A Metallo-beta-lactamase; hydrolase (beta-lactamase), zinc; HET: MES; 1.85A {Bacteroides fragilis} SCOP: d.157.1.1 PDB: 1a8t_A* 2bmi_A 1kr3_A 1znb_A 2znb_A 3znb_A 4znb_A 1hlk_A*
Probab=22.66 E-value=65 Score=24.27 Aligned_cols=30 Identities=13% Similarity=0.191 Sum_probs=21.4
Q ss_pred hcCCCCCCCChhhHHHHHHHHHHHHHHHHH
Q 039972 55 SMVPGGTKMDTASMLDEAINYVKFLKAVIW 84 (169)
Q Consensus 55 ~lvP~~~K~dkasiL~~aI~YIk~Lq~~v~ 84 (169)
.++|+-...-....++.+++||+.+.+++.
T Consensus 201 ~v~pgHg~~~~~~~~~~~~~~l~~~~~~~~ 230 (232)
T 1a7t_A 201 YVVPGHGNYGGTELIEHTKQIVNQYIESTS 230 (232)
T ss_dssp EEEESSSCCBCTHHHHHHHHHHHHHHHHHC
T ss_pred EEECCCCCcccHHHHHHHHHHHHHHHHHhc
Confidence 466763333335788999999999988774
No 44
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=21.13 E-value=91 Score=19.47 Aligned_cols=15 Identities=13% Similarity=-0.070 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHH
Q 039972 74 NYVKFLKAVIWFHEN 88 (169)
Q Consensus 74 ~YIk~Lq~~v~~L~~ 88 (169)
+|+..|+.+|+.|+.
T Consensus 22 ~~~~~Le~~~~~L~~ 36 (61)
T 1t2k_D 22 VWVQSLEKKAEDLSS 36 (61)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444455555444443
No 45
>1f1f_A Cytochrome C6; heme, protein structure, cyanobacteria, photosynthesis, electron transport; HET: HEM; 2.70A {Arthrospira maxima} SCOP: a.3.1.1 PDB: 1kib_A*
Probab=20.92 E-value=1.6e+02 Score=18.22 Aligned_cols=39 Identities=10% Similarity=0.150 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhcCCCC-CCCChhhHHHHHHHHHHHHHHH
Q 039972 43 RHRISDRFKILQSMVPGG-TKMDTASMLDEAINYVKFLKAV 82 (169)
Q Consensus 43 R~kin~~~~~Lr~lvP~~-~K~dkasiL~~aI~YIk~Lq~~ 82 (169)
++.|...+..-...+|.. ..++... +...+.||+.|..+
T Consensus 48 ~~~l~~~i~~g~~~Mp~~~~~ls~~e-i~~l~~yl~~~~~~ 87 (89)
T 1f1f_A 48 VAAVAYQVTNGKNAMPGFNGRLSPLQ-IEDVAAYVVDQAEK 87 (89)
T ss_dssp HHHHHHHHHHCBTTBCCCTTTSCHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCccccCCCHHH-HHHHHHHHHHHhhc
Confidence 444555444444567764 3466555 57799999988754
Done!