BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 039974
         (113 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2PFF|A Chain A, Structural Insights Of Yeast Fatty Acid Synthase
 pdb|2PFF|D Chain D, Structural Insights Of Yeast Fatty Acid Synthase
 pdb|2PFF|G Chain G, Structural Insights Of Yeast Fatty Acid Synthase
          Length = 1688

 Score = 26.9 bits (58), Expect = 3.0,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 4/51 (7%)

Query: 62   KGILTTSRGEASEIDVN--NLGLQERQR-LVDKLVKIAE-VDNEQFLLKLK 108
            KGILTT+R   S +     NL ++ R+R LV +  +I + V+NE   LKL+
Sbjct: 1224 KGILTTAREHHSSVKYASPNLNMKYRKRQLVTREAQIKDWVENELEALKLE 1274


>pdb|4E3W|A Chain A, Crystal Structure Francisella Tularensis Histidine Acid
           Phosphatase Cryoprotected With Proline
 pdb|4E3W|B Chain B, Crystal Structure Francisella Tularensis Histidine Acid
           Phosphatase Cryoprotected With Proline
          Length = 342

 Score = 26.6 bits (57), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 3/50 (6%)

Query: 67  TSRGEASEIDVN---NLGLQERQRLVDKLVKIAEVDNEQFLLKLKNRIDR 113
           T   E + I +N   NLGLQ R+R +DK   + E   +Q +  L +  +R
Sbjct: 35  TELSELTPIGMNQEYNLGLQLRKRYIDKFGLLPEHYVDQSIYVLSSHTNR 84


>pdb|3IT3|A Chain A, Crystal Structure Francisella Tularensis Histidine Acid
           Phosphatase D261a Mutant Complexed With Substrate 3'-Amp
 pdb|3IT3|B Chain B, Crystal Structure Francisella Tularensis Histidine Acid
           Phosphatase D261a Mutant Complexed With Substrate 3'-Amp
          Length = 342

 Score = 25.4 bits (54), Expect = 7.7,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 3/50 (6%)

Query: 67  TSRGEASEIDVN---NLGLQERQRLVDKLVKIAEVDNEQFLLKLKNRIDR 113
           T   E + I +N   NLGLQ R+R +DK   + E   +Q +  L +  +R
Sbjct: 35  TELSELTPIGMNQEYNLGLQLRKRYIDKFGLLPEHYVDQSIYVLSSHTNR 84


>pdb|3IT0|A Chain A, Crystal Structure Francisella Tularensis Histidine Acid
           Phosphatase Complexed With Phosphate
 pdb|3IT0|B Chain B, Crystal Structure Francisella Tularensis Histidine Acid
           Phosphatase Complexed With Phosphate
 pdb|3IT1|A Chain A, Crystal Structure Francisella Tularensis Histidine Acid
           Phosphatase Complexed With L(+)-Tartrate
 pdb|3IT1|B Chain B, Crystal Structure Francisella Tularensis Histidine Acid
           Phosphatase Complexed With L(+)-Tartrate
 pdb|3IT2|A Chain A, Crystal Structure Of Ligand-Free Francisella Tularensis
           Histidine Acid Phosphatase
 pdb|3IT2|B Chain B, Crystal Structure Of Ligand-Free Francisella Tularensis
           Histidine Acid Phosphatase
          Length = 342

 Score = 25.4 bits (54), Expect = 7.7,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 3/50 (6%)

Query: 67  TSRGEASEIDVN---NLGLQERQRLVDKLVKIAEVDNEQFLLKLKNRIDR 113
           T   E + I +N   NLGLQ R+R +DK   + E   +Q +  L +  +R
Sbjct: 35  TELSELTPIGMNQEYNLGLQLRKRYIDKFGLLPEHYVDQSIYVLSSHTNR 84


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.133    0.374 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,693,963
Number of Sequences: 62578
Number of extensions: 75801
Number of successful extensions: 180
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 180
Number of HSP's gapped (non-prelim): 6
length of query: 113
length of database: 14,973,337
effective HSP length: 77
effective length of query: 36
effective length of database: 10,154,831
effective search space: 365573916
effective search space used: 365573916
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)