Query 039974
Match_columns 113
No_of_seqs 139 out of 305
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 03:51:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039974.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039974hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03140 ABC transporter G fam 99.4 6.6E-14 1.4E-18 130.5 4.6 90 22-113 19-122 (1470)
2 KOG0065 Pleiotropic drug resis 98.8 4.3E-09 9.2E-14 97.7 5.7 68 40-113 12-80 (1391)
3 PF06971 Put_DNA-bind_N: Putat 47.8 6.3 0.00014 24.0 0.1 21 46-66 3-23 (50)
4 KOG1668 Elongation factor 1 be 31.0 32 0.0007 27.3 1.7 29 30-61 108-136 (231)
5 PF02520 DUF148: Domain of unk 29.9 1.1E+02 0.0023 20.7 4.0 54 46-110 55-108 (113)
6 PF11775 CobT_C: Cobalamin bio 25.4 64 0.0014 25.4 2.4 14 40-54 116-129 (219)
7 PF05083 LST1: LST-1 protein; 25.1 38 0.00082 22.4 0.9 18 42-59 35-52 (74)
8 COG0447 MenB Dihydroxynaphthoi 20.9 69 0.0015 25.9 1.8 26 42-67 208-235 (282)
9 PRK00766 hypothetical protein; 20.2 96 0.0021 23.8 2.4 40 45-93 126-167 (194)
10 PF12674 Zn_ribbon_2: Putative 17.8 78 0.0017 20.9 1.3 20 42-61 62-81 (81)
No 1
>PLN03140 ABC transporter G family member; Provisional
Probab=99.44 E-value=6.6e-14 Score=130.54 Aligned_cols=90 Identities=50% Similarity=0.768 Sum_probs=73.9
Q ss_pred cccccCCCCccccCC------CCCcChHHHhHHHHHhhCCchhHhhhcccccC-----CCC---cccccccCCChHHhHH
Q 039974 22 SRWRSNSPGAFSVSS------SREEDDEEALIWAALEKLPTYNRLRKGILTTS-----RGE---ASEIDVNNLGLQERQR 87 (113)
Q Consensus 22 ~~~~~~~~~~f~~~~------~~~~ddEe~L~WaAierLPT~~R~r~~il~~~-----~g~---~~~vDv~kL~~~er~~ 87 (113)
++|.. .++|++.+ +..+||||+|+|||+||||||+|+|++++... .|. ..++|+.+|+.++++.
T Consensus 19 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (1470)
T PLN03140 19 SSRNM--EDVFSGGSQSRRRTSSVDEDEEALKWAAIEKLPTYSRLRTSIMKSFVENDVYGNQLLHKEVDVTKLDGNDRQK 96 (1470)
T ss_pred hhhhh--hhhhhccchhccccccccCChHhhhhHHhhhCCchhhhhhhhhhcccccccccccccccccccccCChHHHHH
Confidence 55744 57885533 13568999999999999999999999999642 122 2259999999999999
Q ss_pred HHHHHHHhhhhchHHHHHHHHhhhcC
Q 039974 88 LVDKLVKIAEVDNEQFLLKLKNRIDR 113 (113)
Q Consensus 88 llerl~k~~e~Dne~fL~klreRiDR 113 (113)
+++++++++++|+++|++++++|+|+
T Consensus 97 ~~~~~~~~~~~d~~~~~~~~~~~~~~ 122 (1470)
T PLN03140 97 FIDMVFKVAEEDNEKFLKKFRNRIDR 122 (1470)
T ss_pred HHHhhhcccchhHHHHHHHHHhhhcc
Confidence 99999999999999999999998873
No 2
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.83 E-value=4.3e-09 Score=97.72 Aligned_cols=68 Identities=46% Similarity=0.783 Sum_probs=60.1
Q ss_pred cChHHHhHHHHHhhCCchhHhhhcccccC-CCCcccccccCCChHHhHHHHHHHHHhhhhchHHHHHHHHhhhcC
Q 039974 40 EDDEEALIWAALEKLPTYNRLRKGILTTS-RGEASEIDVNNLGLQERQRLVDKLVKIAEVDNEQFLLKLKNRIDR 113 (113)
Q Consensus 40 ~ddEe~L~WaAierLPT~~R~r~~il~~~-~g~~~~vDv~kL~~~er~~llerl~k~~e~Dne~fL~klreRiDR 113 (113)
++||++|+|||++||||++| +++... .+ ++|+.++++.+++.++++.++..++||++++.++++|+++
T Consensus 12 ~~~e~~~~~a~~~~~pt~~~---~~~~~~~~~---~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~r~~~~~ 80 (1391)
T KOG0065|consen 12 DEDEEALRWAAIERLPTFDR---SLLRSIFES---EVDVTKLDPDDDPKFIEKSSKHWEQDNEKLLEKLRERIDR 80 (1391)
T ss_pred chhHHHHHHHHHhcCccccc---hhhhhhccC---cccccCCCcccchhHHHHhHHHHhhhHHHHHHHHHhhcCc
Confidence 34999999999999999999 555431 22 6999999999999999999999999999999999999985
No 3
>PF06971 Put_DNA-bind_N: Putative DNA-binding protein N-terminus; InterPro: IPR009718 This entry represents the C terminus (approximately 30 residues) of a number of Rex proteins. These are redox-sensing repressors that appear to be widespread among Gram-positive bacteria []. They modulate transcription in response to changes in cellular NADH/NAD(+) redox state. Rex is predicted to include a pyridine nucleotide-binding domain (Rossmann fold), and residues that might play key structural and nucleotide binding roles are highly conserved.; GO: 0045892 negative regulation of transcription, DNA-dependent, 0051775 response to redox state, 0005737 cytoplasm; PDB: 3IL2_B 3IKT_A 3IKV_B 1XCB_F 2DT5_A 2VT3_A 2VT2_A 3KEO_B 3KET_A 3KEQ_A ....
Probab=47.81 E-value=6.3 Score=23.97 Aligned_cols=21 Identities=24% Similarity=0.382 Sum_probs=16.6
Q ss_pred hHHHHHhhCCchhHhhhcccc
Q 039974 46 LIWAALEKLPTYNRLRKGILT 66 (113)
Q Consensus 46 L~WaAierLPT~~R~r~~il~ 66 (113)
+-.++|+|||.|-|.-..+-.
T Consensus 3 Ip~~ti~RL~~Y~r~L~~l~~ 23 (50)
T PF06971_consen 3 IPKATIRRLPLYLRYLEQLKE 23 (50)
T ss_dssp -SHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHH
Confidence 346899999999998777764
No 4
>KOG1668 consensus Elongation factor 1 beta/delta chain [Transcription]
Probab=31.04 E-value=32 Score=27.32 Aligned_cols=29 Identities=34% Similarity=0.488 Sum_probs=20.5
Q ss_pred CccccCCCCCcChHHHhHHHHHhhCCchhHhh
Q 039974 30 GAFSVSSSREEDDEEALIWAALEKLPTYNRLR 61 (113)
Q Consensus 30 ~~f~~~~~~~~ddEe~L~WaAierLPT~~R~r 61 (113)
+.|... .+++++|+-++.+ ||||+|.-..
T Consensus 108 DLFGsd--~EEEd~eA~~~~e-Erla~y~~kk 136 (231)
T KOG1668|consen 108 DLFGSD--DEEEDEEAARIRE-ERLAAYAAKK 136 (231)
T ss_pred cccCCc--cccchhHHHHHHh-hhhhhhhHHh
Confidence 347665 3557778888887 8999987443
No 5
>PF02520 DUF148: Domain of unknown function DUF148; InterPro: IPR003677 This entry represents the domain DUF148, which has no known function.
Probab=29.94 E-value=1.1e+02 Score=20.70 Aligned_cols=54 Identities=22% Similarity=0.217 Sum_probs=37.3
Q ss_pred hHHHHHhhCCchhHhhhcccccCCCCcccccccCCChHHhHHHHHHHHHhhhhchHHHHHHHHhh
Q 039974 46 LIWAALEKLPTYNRLRKGILTTSRGEASEIDVNNLGLQERQRLVDKLVKIAEVDNEQFLLKLKNR 110 (113)
Q Consensus 46 L~WaAierLPT~~R~r~~il~~~~g~~~~vDv~kL~~~er~~llerl~k~~e~Dne~fL~klreR 110 (113)
-.=++|..||+...-=.+|+ +-..|+..+.+.-++.+....... -.-|..++..
T Consensus 55 ~~~~vi~~L~~a~~~l~~I~----------~n~~lT~~q~~~~I~~l~~~~~~e-~~~l~~i~~~ 108 (113)
T PF02520_consen 55 NVTAVISNLSSAFAKLSAIL----------DNKSLTRQQQQEAIDALRKQYPEE-VDTLFFIRKE 108 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHH----------cCcccCHHHHHHHHHHHHHHCCHH-HHHHHHHHHH
Confidence 34568889997777767776 446788888988888888866655 3344444443
No 6
>PF11775 CobT_C: Cobalamin biosynthesis protein CobT VWA domain
Probab=25.42 E-value=64 Score=25.40 Aligned_cols=14 Identities=64% Similarity=0.902 Sum_probs=10.7
Q ss_pred cChHHHhHHHHHhhC
Q 039974 40 EDDEEALIWAALEKL 54 (113)
Q Consensus 40 ~ddEe~L~WaAierL 54 (113)
.-|.|||+||+ +||
T Consensus 116 niDGeAl~~a~-~rL 129 (219)
T PF11775_consen 116 NIDGEALRWAA-ERL 129 (219)
T ss_pred CCcHHHHHHHH-HHH
Confidence 35899999998 344
No 7
>PF05083 LST1: LST-1 protein; InterPro: IPR007775 B144/LST1 is a gene encoded in the human major histocompatibility complex that produces multiple forms of alternatively spliced mRNA and encodes peptides fewer than 100 amino acids in length. B144/LST1 is strongly expressed in dendritic cells. Transfection of B144/LST1 into a variety of cells induces morphologic changes including the production of long, thin filopodia []. A possible role in modulating immune responses. Induces morphological changes including production of filopodia and microspikes when overexpressed in a variety of cell types and may be involved in dendritic cell maturation. Isoform 1 and isoform 2 have an inhibitory effect on lymphocyte proliferation [, ]. ; GO: 0000902 cell morphogenesis, 0006955 immune response, 0016020 membrane
Probab=25.14 E-value=38 Score=22.39 Aligned_cols=18 Identities=33% Similarity=0.608 Sum_probs=15.4
Q ss_pred hHHHhHHHHHhhCCchhH
Q 039974 42 DEEALIWAALEKLPTYNR 59 (113)
Q Consensus 42 dEe~L~WaAierLPT~~R 59 (113)
-|.++..|.|+|||.-..
T Consensus 35 ~eQE~hyasLqrLPv~~s 52 (74)
T PF05083_consen 35 SEQELHYASLQRLPVPSS 52 (74)
T ss_pred cccchHHHHHHhCCCCCC
Confidence 478899999999998764
No 8
>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]
Probab=20.88 E-value=69 Score=25.92 Aligned_cols=26 Identities=35% Similarity=0.580 Sum_probs=23.1
Q ss_pred hHHHhHHH--HHhhCCchhHhhhccccc
Q 039974 42 DEEALIWA--ALEKLPTYNRLRKGILTT 67 (113)
Q Consensus 42 dEe~L~Wa--AierLPT~~R~r~~il~~ 67 (113)
++|.++|+ -+++-||.-|+-++.+..
T Consensus 208 E~e~v~W~~E~l~kSP~AlR~LK~Afna 235 (282)
T COG0447 208 EKETVQWAREMLAKSPTALRMLKAAFNA 235 (282)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHhcC
Confidence 67889999 589999999999998864
No 9
>PRK00766 hypothetical protein; Provisional
Probab=20.19 E-value=96 Score=23.80 Aligned_cols=40 Identities=10% Similarity=0.042 Sum_probs=27.9
Q ss_pred HhHHHHHhhCCchhHhhh--cccccCCCCcccccccCCChHHhHHHHHHHH
Q 039974 45 ALIWAALEKLPTYNRLRK--GILTTSRGEASEIDVNNLGLQERQRLVDKLV 93 (113)
Q Consensus 45 ~L~WaAierLPT~~R~r~--~il~~~~g~~~~vDv~kL~~~er~~llerl~ 93 (113)
+.+|+.|+++|....+.+ .++ |-+..++.++...++.++.
T Consensus 126 ~~R~~~~~~~g~~~~~~~~~~vy---------vs~~gi~l~~A~~lv~~~~ 167 (194)
T PRK00766 126 EERIKLIKKAGKIVELITRGPLY---------IQAAGIDPETAAEIVRLTS 167 (194)
T ss_pred HHHHHHHHhCCCceEeccCCCEE---------EEEcCCCHHHHHHHHHHhc
Confidence 348999999998887753 233 4446677777777776554
No 10
>PF12674 Zn_ribbon_2: Putative zinc ribbon domain
Probab=17.75 E-value=78 Score=20.87 Aligned_cols=20 Identities=25% Similarity=0.205 Sum_probs=17.0
Q ss_pred hHHHhHHHHHhhCCchhHhh
Q 039974 42 DEEALIWAALEKLPTYNRLR 61 (113)
Q Consensus 42 dEe~L~WaAierLPT~~R~r 61 (113)
.++.+++.+.+.||+..|.+
T Consensus 62 ~~~~a~~~~~~~lp~LkRWk 81 (81)
T PF12674_consen 62 TPEEARKMMPRYLPTLKRWK 81 (81)
T ss_pred CHHHHHHHHHHHccCCcccC
Confidence 57889999999999998854
Done!