Query 039974
Match_columns 113
No_of_seqs 139 out of 305
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 05:37:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039974.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039974hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4emo_A Sharpin; pleckstrin hom 23.1 37 0.0013 23.6 1.7 13 41-53 107-119 (129)
2 2zet_C Melanophilin; complex, 20.1 1.4E+02 0.0047 20.9 4.2 39 74-112 11-51 (153)
3 2vt3_A REX, redox-sensing tran 13.5 28 0.00095 25.5 -0.9 25 42-66 4-28 (215)
4 2dt5_A AT-rich DNA-binding pro 12.0 46 0.0016 24.2 -0.1 19 48-66 5-23 (211)
5 3keo_A Redox-sensing transcrip 10.4 56 0.0019 24.0 -0.1 21 46-66 7-27 (212)
6 2qjx_A Protein BIM1; calponin 9.3 1.2E+02 0.0042 20.7 1.4 26 85-110 83-108 (127)
7 3rq9_A TSI2, type VI secretion 9.2 98 0.0034 19.8 0.8 10 53-62 64-73 (85)
8 2gey_A ACLR protein; alpha+bet 8.6 1.5E+02 0.0051 19.3 1.5 12 42-53 142-153 (158)
9 3stq_A TSI2, putative uncharac 7.8 1.2E+02 0.0042 19.9 0.8 9 53-61 89-97 (102)
10 3qd7_X Uncharacterized protein 7.7 3.9E+02 0.013 18.0 3.5 37 56-96 35-71 (137)
No 1
>4emo_A Sharpin; pleckstrin homology (PH) domain, lubac, SIPL1, linear ubiqui HOIL-1L, HOIP, protein binding; 2.00A {Homo sapiens}
Probab=23.13 E-value=37 Score=23.61 Aligned_cols=13 Identities=38% Similarity=0.685 Sum_probs=11.2
Q ss_pred ChHHHhHHHHHhh
Q 039974 41 DDEEALIWAALEK 53 (113)
Q Consensus 41 ddEe~L~WaAier 53 (113)
+++||-+||||.+
T Consensus 107 ~~qeAQrWA~lv~ 119 (129)
T 4emo_A 107 NPQEAQRWAVLVR 119 (129)
T ss_dssp SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 6899999999854
No 2
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=20.06 E-value=1.4e+02 Score=20.87 Aligned_cols=39 Identities=21% Similarity=0.267 Sum_probs=25.6
Q ss_pred cccccCCChHHhHHHHHHHHHhhh--hchHHHHHHHHhhhc
Q 039974 74 EIDVNNLGLQERQRLVDKLVKIAE--VDNEQFLLKLKNRID 112 (113)
Q Consensus 74 ~vDv~kL~~~er~~llerl~k~~e--~Dne~fL~klreRiD 112 (113)
.+|++.|..+|++.+++=+.+.-+ .--+..+.+|+++|+
T Consensus 11 ~~dLs~LteeEr~~Il~VL~Rd~~l~~~EeeRi~kLk~~l~ 51 (153)
T 2zet_C 11 RLDLSTLTDEEAEHVWAVVQRDFDLRRREEERLQGLKGKIQ 51 (153)
T ss_dssp CCCCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccCCHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHH
Confidence 489999999999998866655322 123345566665543
No 3
>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*
Probab=13.52 E-value=28 Score=25.53 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=15.8
Q ss_pred hHHHhHHHHHhhCCchhHhhhcccc
Q 039974 42 DEEALIWAALEKLPTYNRLRKGILT 66 (113)
Q Consensus 42 dEe~L~WaAierLPT~~R~r~~il~ 66 (113)
+....-.|.|.|||.|-|.-+.+..
T Consensus 4 ~~~~i~~~~~~Rl~~Y~r~l~~l~~ 28 (215)
T 2vt3_A 4 DQSKIPQATAKRLPLYYRFLKNLHA 28 (215)
T ss_dssp -------CHHHHHHHHHHHHHHHHH
T ss_pred ccCcCCHHHHHHHHHHHHHHHHHHH
Confidence 4445778999999999998887764
No 4
>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*
Probab=11.95 E-value=46 Score=24.22 Aligned_cols=19 Identities=32% Similarity=0.373 Sum_probs=16.1
Q ss_pred HHHHhhCCchhHhhhcccc
Q 039974 48 WAALEKLPTYNRLRKGILT 66 (113)
Q Consensus 48 WaAierLPT~~R~r~~il~ 66 (113)
.|.|.|||.|-|.-+.+..
T Consensus 5 ~~~~~Rl~~y~r~l~~l~~ 23 (211)
T 2dt5_A 5 EAAISRLITYLRILEELEA 23 (211)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5889999999998877764
No 5
>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*
Probab=10.37 E-value=56 Score=24.00 Aligned_cols=21 Identities=29% Similarity=0.302 Sum_probs=16.5
Q ss_pred hHHHHHhhCCchhHhhhcccc
Q 039974 46 LIWAALEKLPTYNRLRKGILT 66 (113)
Q Consensus 46 L~WaAierLPT~~R~r~~il~ 66 (113)
.-.|.|+|||.|-|.-+.+..
T Consensus 7 ip~~ti~RL~~Y~r~l~~l~~ 27 (212)
T 3keo_A 7 IPKATAKRLSLYYRIFKRFNT 27 (212)
T ss_dssp CCHHHHTTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHH
Confidence 346899999999997776653
No 6
>2qjx_A Protein BIM1; calponin homology domain, protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=9.32 E-value=1.2e+02 Score=20.65 Aligned_cols=26 Identities=38% Similarity=0.473 Sum_probs=20.6
Q ss_pred hHHHHHHHHHhhhhchHHHHHHHHhh
Q 039974 85 RQRLVDKLVKIAEVDNEQFLLKLKNR 110 (113)
Q Consensus 85 r~~llerl~k~~e~Dne~fL~klreR 110 (113)
+...+++|++-.-|||..|++-++.=
T Consensus 83 k~ipV~kLvKgrfQDNlEFlQWfkkf 108 (127)
T 2qjx_A 83 KTVYVDKLIRCKFQDNLEFLQWLKKH 108 (127)
T ss_dssp CCCCHHHHTTTCHHHHHHHHHHHHHH
T ss_pred CccCHHHHhccCchhHHHHHHHHHHH
Confidence 34567888888889999999887753
No 7
>3rq9_A TSI2, type VI secretion immunity protein; antitoxin, TSE2-BI protein; 1.00A {Pseudomonas aeruginosa} PDB: 3vpv_A
Probab=9.23 E-value=98 Score=19.81 Aligned_cols=10 Identities=50% Similarity=0.936 Sum_probs=8.1
Q ss_pred hCCchhHhhh
Q 039974 53 KLPTYNRLRK 62 (113)
Q Consensus 53 rLPT~~R~r~ 62 (113)
.||+|+++=.
T Consensus 64 ~LPpY~~Li~ 73 (85)
T 3rq9_A 64 GLPPYDRLIE 73 (85)
T ss_dssp SCCCHHHHTS
T ss_pred CCCCHHHHhh
Confidence 6999998743
No 8
>2gey_A ACLR protein; alpha+beta barrel, oxidoreductase; HET: PG4; 1.80A {Streptomyces galilaeus} SCOP: d.17.4.9
Probab=8.56 E-value=1.5e+02 Score=19.28 Aligned_cols=12 Identities=42% Similarity=0.429 Sum_probs=9.8
Q ss_pred hHHHhHHHHHhh
Q 039974 42 DEEALIWAALEK 53 (113)
Q Consensus 42 dEe~L~WaAier 53 (113)
+...+.|+|||-
T Consensus 142 ~~~~~~~~~~~~ 153 (158)
T 2gey_A 142 EASAKLAAALEH 153 (158)
T ss_dssp HHHHHHHHHHHH
T ss_pred ccHHHHHHHHhh
Confidence 567899999974
No 9
>3stq_A TSI2, putative uncharacterized protein; coiled-coil, toxin-antitoxin system, TSI2-TSE2, T6SS, toxin toxin; 2.28A {Pseudomonas aeruginosa}
Probab=7.82 E-value=1.2e+02 Score=19.93 Aligned_cols=9 Identities=56% Similarity=0.995 Sum_probs=7.5
Q ss_pred hCCchhHhh
Q 039974 53 KLPTYNRLR 61 (113)
Q Consensus 53 rLPT~~R~r 61 (113)
.||+|+++=
T Consensus 89 ~LPpY~~Li 97 (102)
T 3stq_A 89 GLPPYDRLI 97 (102)
T ss_dssp SCCCHHHHH
T ss_pred CCCCHHHHh
Confidence 699999873
No 10
>3qd7_X Uncharacterized protein YDAL; alpha/beta/alpha fold, endonuclease, hydrolase; 2.30A {Escherichia coli}
Probab=7.69 E-value=3.9e+02 Score=17.98 Aligned_cols=37 Identities=16% Similarity=0.350 Sum_probs=25.5
Q ss_pred chhHhhhcccccCCCCcccccccCCChHHhHHHHHHHHHhh
Q 039974 56 TYNRLRKGILTTSRGEASEIDVNNLGLQERQRLVDKLVKIA 96 (113)
Q Consensus 56 T~~R~r~~il~~~~g~~~~vDv~kL~~~er~~llerl~k~~ 96 (113)
++.+|+.|-.... .++|+..|..++....+++.+..+
T Consensus 35 ~~~kLr~G~~~~~----~~LDLHG~~~~EA~~~L~~fL~~a 71 (137)
T 3qd7_X 35 VLDKLRSGKYPQQ----ASLNLLRQPVEECRKMVFSFIQQA 71 (137)
T ss_dssp TTHHHHSCCCCGG----GEEECTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCC----eEEECCCCCHHHHHHHHHHHHHHH
Confidence 4556666555321 269999999999988887776543
Done!