Query 039974
Match_columns 113
No_of_seqs 139 out of 305
Neff 5.5
Searched_HMMs 13730
Date Mon Mar 25 05:37:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039974.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/039974hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2dt5a1 a.4.5.38 (A:4-77) Tran 36.9 3.5 0.00026 24.6 0.1 19 48-66 2-20 (74)
2 d1ppja2 d.185.1.1 (A:234-442) 19.1 16 0.0011 23.7 0.8 15 51-65 195-209 (209)
3 d3cx5a2 d.185.1.1 (A:240-457) 18.9 16 0.0011 24.1 0.7 14 51-64 200-213 (218)
4 d2ifta1 c.66.1.46 (A:11-193) P 8.9 31 0.0023 22.3 -0.2 12 55-66 25-36 (183)
5 d1s3aa1 c.47.1.22 (A:15-99) NA 7.7 1.7E+02 0.012 16.4 3.0 27 68-94 56-82 (85)
6 d1v7ba2 a.121.1.1 (A:75-175) T 7.5 1.3E+02 0.0091 18.0 2.4 22 75-96 78-99 (101)
7 d1lrva_ a.118.1.5 (A:) Leucine 7.2 74 0.0054 21.6 1.3 17 40-56 76-92 (233)
8 d2fhpa1 c.66.1.46 (A:1-182) Pu 7.1 50 0.0036 21.3 0.2 12 55-66 23-34 (182)
9 d2az0a1 a.30.8.1 (A:2-71) B2 { 7.1 53 0.0039 18.6 0.3 17 47-65 3-19 (70)
10 d1x1ga1 b.55.1.1 (A:8-123) Ple 7.0 90 0.0065 17.2 1.4 16 39-54 99-115 (116)
No 1
>d2dt5a1 a.4.5.38 (A:4-77) Transcriptional repressor Rex, N-terminal domain {Thermus aquaticus [TaxId: 271]}
Probab=36.88 E-value=3.5 Score=24.65 Aligned_cols=19 Identities=32% Similarity=0.373 Sum_probs=16.0
Q ss_pred HHHHhhCCchhHhhhcccc
Q 039974 48 WAALEKLPTYNRLRKGILT 66 (113)
Q Consensus 48 WaAierLPT~~R~r~~il~ 66 (113)
+|+|+|||.|-|.-+.+..
T Consensus 2 ~ati~RLp~Ylr~L~~l~~ 20 (74)
T d2dt5a1 2 EAAISRLITYLRILEELEA 20 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 5899999999998776664
No 2
>d1ppja2 d.185.1.1 (A:234-442) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]}
Probab=19.14 E-value=16 Score=23.70 Aligned_cols=15 Identities=53% Similarity=1.209 Sum_probs=10.6
Q ss_pred HhhCCchhHhhhccc
Q 039974 51 LEKLPTYNRLRKGIL 65 (113)
Q Consensus 51 ierLPT~~R~r~~il 65 (113)
++.||.|++++-+++
T Consensus 195 ~~~lp~~~~~~~~~~ 209 (209)
T d1ppja2 195 IEQLPDYNRIRSGMF 209 (209)
T ss_dssp CTTSCCHHHHHHTTC
T ss_pred hhhCCCHHHHHhhcC
Confidence 457788888877653
No 3
>d3cx5a2 d.185.1.1 (A:240-457) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=18.95 E-value=16 Score=24.13 Aligned_cols=14 Identities=36% Similarity=0.655 Sum_probs=10.3
Q ss_pred HhhCCchhHhhhcc
Q 039974 51 LEKLPTYNRLRKGI 64 (113)
Q Consensus 51 ierLPT~~R~r~~i 64 (113)
++.||.|+|+|..+
T Consensus 200 ~~~lp~~~~i~~~~ 213 (218)
T d3cx5a2 200 IEGLLDYMRIRSDM 213 (218)
T ss_dssp CTTSCCHHHHHHTT
T ss_pred hhhCCCHHHHHhHh
Confidence 56788888887654
No 4
>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}
Probab=8.92 E-value=31 Score=22.30 Aligned_cols=12 Identities=25% Similarity=0.636 Sum_probs=8.1
Q ss_pred CchhHhhhcccc
Q 039974 55 PTYNRLRKGILT 66 (113)
Q Consensus 55 PT~~R~r~~il~ 66 (113)
||.+|+|.+++.
T Consensus 25 Pt~~~vrealFn 36 (183)
T d2ifta1 25 PTGDRVKETLFN 36 (183)
T ss_dssp ---CHHHHHHHH
T ss_pred cCcHHHHHHHHH
Confidence 999999999986
No 5
>d1s3aa1 c.47.1.22 (A:15-99) NADH-ubiquinone oxidoreductase b8 subunit, CI-B8 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.65 E-value=1.7e+02 Score=16.44 Aligned_cols=27 Identities=15% Similarity=0.430 Sum_probs=21.2
Q ss_pred CCCCcccccccCCChHHhHHHHHHHHH
Q 039974 68 SRGEASEIDVNNLGLQERQRLVDKLVK 94 (113)
Q Consensus 68 ~~g~~~~vDv~kL~~~er~~llerl~k 94 (113)
.+|....|++.+++..+-...++.|+.
T Consensus 56 ~nG~e~~i~l~n~~~~eI~~~l~~L~~ 82 (85)
T d1s3aa1 56 AFGQETNVPLNNFSADQVTRALENVLS 82 (85)
T ss_dssp SSCCEEEEECTTCCHHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCHHHHHHHHHHHHc
Confidence 556656799999999988877777764
No 6
>d1v7ba2 a.121.1.1 (A:75-175) Transcriptional regulator Cgl2612 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=7.54 E-value=1.3e+02 Score=18.01 Aligned_cols=22 Identities=18% Similarity=0.413 Sum_probs=18.8
Q ss_pred ccccCCChHHhHHHHHHHHHhh
Q 039974 75 IDVNNLGLQERQRLVDKLVKIA 96 (113)
Q Consensus 75 vDv~kL~~~er~~llerl~k~~ 96 (113)
.....|+.++|+.+++++++.+
T Consensus 78 l~~~~ls~~~R~~l~~~l~~li 99 (101)
T d1v7ba2 78 IHDDVLSKSKRQAMLETILELI 99 (101)
T ss_dssp TSSSCCCHHHHHHHHHHHHHTS
T ss_pred cCCCCCCHHHHHHHHHHHHHhc
Confidence 5667899999999999998865
No 7
>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}
Probab=7.23 E-value=74 Score=21.58 Aligned_cols=17 Identities=29% Similarity=0.442 Sum_probs=14.5
Q ss_pred cChHHHhHHHHHhhCCc
Q 039974 40 EDDEEALIWAALEKLPT 56 (113)
Q Consensus 40 ~ddEe~L~WaAierLPT 56 (113)
.|+++..+|+|.++||.
T Consensus 76 ~D~d~~VR~~AA~~Lp~ 92 (233)
T d1lrva_ 76 RDSDEVVRRAVAYRLPR 92 (233)
T ss_dssp TCSSHHHHHHHHTTSCS
T ss_pred cCCCHHHHHHHHHHcCH
Confidence 36778899999999995
No 8
>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}
Probab=7.14 E-value=50 Score=21.33 Aligned_cols=12 Identities=25% Similarity=0.714 Sum_probs=10.8
Q ss_pred CchhHhhhcccc
Q 039974 55 PTYNRLRKGILT 66 (113)
Q Consensus 55 PT~~R~r~~il~ 66 (113)
||.+|+|.+++.
T Consensus 23 Pt~~~vrealFn 34 (182)
T d2fhpa1 23 PTTDKVKESIFN 34 (182)
T ss_dssp CCCHHHHHHHHH
T ss_pred cCcHHHHHHHHH
Confidence 999999999875
No 9
>d2az0a1 a.30.8.1 (A:2-71) B2 {Flock house virus, FHV [TaxId: 12287]}
Probab=7.10 E-value=53 Score=18.61 Aligned_cols=17 Identities=24% Similarity=0.546 Sum_probs=12.6
Q ss_pred HHHHHhhCCchhHhhhccc
Q 039974 47 IWAALEKLPTYNRLRKGIL 65 (113)
Q Consensus 47 ~WaAierLPT~~R~r~~il 65 (113)
+-|-|+.|| ||+++++-
T Consensus 3 klaliqelp--driq~ave 19 (70)
T d2az0a1 3 KLALIQELP--DRIQTAVE 19 (70)
T ss_dssp HHHHHHTHH--HHHHHHHH
T ss_pred hhHHHHHhh--HHHHHHHH
Confidence 456788887 78888775
No 10
>d1x1ga1 b.55.1.1 (A:8-123) Pleckstrin-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.97 E-value=90 Score=17.18 Aligned_cols=16 Identities=31% Similarity=0.569 Sum_probs=11.6
Q ss_pred CcChHHHhHHH-HHhhC
Q 039974 39 EEDDEEALIWA-ALEKL 54 (113)
Q Consensus 39 ~~ddEe~L~Wa-AierL 54 (113)
.+.+|+.-.|- ||+++
T Consensus 99 a~s~ee~~~Wi~ai~~~ 115 (116)
T d1x1ga1 99 ASSKAERAEWIEAIKKL 115 (116)
T ss_dssp CSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhh
Confidence 44677889997 77764
Done!