Query 039975
Match_columns 100
No_of_seqs 121 out of 648
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 05:38:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039975.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039975hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2al3_A TUG long isoform; TUG U 65.7 8.7 0.0003 25.1 4.1 42 38-82 12-53 (90)
2 1und_A Advillin, P92; actin bi 60.6 2.4 8.3E-05 23.5 0.6 20 54-73 1-20 (37)
3 1y74_B MLIN-2/CASK, peripheral 57.4 4.4 0.00015 23.0 1.3 20 54-73 26-49 (50)
4 3bux_B E3 ubiquitin-protein li 50.9 16 0.00055 29.0 4.0 39 31-72 275-314 (329)
5 2xko_C PIPX, global nitrogen r 42.6 2.8 9.7E-05 27.6 -1.3 11 54-64 5-15 (89)
6 3op0_A Signal transduction pro 42.1 26 0.00087 27.8 3.9 39 31-72 260-299 (323)
7 1z3x_A Putative cytidyltransfe 37.7 1.5 5.2E-05 33.3 -3.6 31 29-62 207-237 (238)
8 2vpk_A Myoneurin; transcriptio 37.5 32 0.0011 21.3 3.2 50 37-97 25-79 (116)
9 1yu8_X Villin; alpha helix, 3- 37.0 9.4 0.00032 23.6 0.5 20 54-73 31-50 (67)
10 1y6i_A Mg-chelatase cofactor G 36.0 2.1 7.2E-05 32.4 -3.1 31 29-62 199-229 (233)
11 1ujs_A Actin-binding LIM prote 34.8 12 0.00041 24.3 0.8 20 54-73 46-65 (88)
12 1qzp_A Dematin; villin headpie 32.9 8.2 0.00028 23.8 -0.2 20 54-73 32-51 (68)
13 1r29_A B-cell lymphoma 6 prote 31.8 33 0.0011 21.6 2.6 53 37-97 32-88 (127)
14 2k6m_S Supervillin; SVHP, HP, 31.4 10 0.00035 23.4 0.0 21 53-73 30-50 (67)
15 3ga1_A Nucleus accumbens-assoc 30.7 58 0.002 20.5 3.7 50 37-97 36-89 (129)
16 2lkt_A Retinoic acid receptor 30.4 35 0.0012 22.1 2.6 9 36-44 23-31 (125)
17 3n5b_B ASR0485 protein; PII, P 29.8 5.9 0.0002 27.0 -1.4 28 28-64 11-38 (112)
18 2nz0_B Potassium voltage-gated 29.5 55 0.0019 22.2 3.5 61 33-98 33-94 (140)
19 1pzq_A Erythronolide synthase; 29.4 30 0.001 20.7 1.8 15 10-24 36-50 (60)
20 1s1g_A Potassium voltage-gated 29.1 30 0.001 23.0 2.1 61 33-98 11-72 (124)
21 2vkp_A BTB/POZ domain-containi 28.8 80 0.0027 18.9 4.0 56 37-97 11-70 (109)
22 3qli_A Coenzyme A transferase; 26.4 38 0.0013 27.5 2.6 43 31-74 403-454 (455)
23 2if5_A Zinc finger and BTB dom 23.9 93 0.0032 19.1 3.6 54 37-97 28-84 (120)
24 3h43_A Proteasome-activating n 23.7 60 0.0021 20.3 2.7 47 7-55 3-49 (85)
25 3ezo_A Malonyl COA-acyl carrie 23.6 50 0.0017 24.7 2.7 40 35-75 10-49 (318)
26 1zav_U 50S ribosomal protein L 23.5 51 0.0018 17.1 1.9 13 61-73 18-30 (30)
27 3pmi_A PWWP domain-containing 23.2 25 0.00087 24.5 0.9 27 47-73 49-78 (134)
28 1wy3_A Villin; structural prot 23.1 22 0.00076 19.2 0.4 18 56-73 1-18 (35)
29 2ccq_A P97, peptide N-glycanas 22.8 66 0.0022 20.7 2.8 44 55-98 45-96 (99)
30 3drz_A BTB/POZ domain-containi 21.8 1.6E+02 0.0053 18.5 5.3 60 34-98 5-69 (107)
31 2ybf_B E3 ubiquitin-protein li 20.8 45 0.0015 17.2 1.3 15 58-72 8-22 (27)
32 1o51_A Hypothetical protein TM 20.6 1.3E+02 0.0045 19.7 4.0 28 36-71 15-42 (114)
No 1
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=65.69 E-value=8.7 Score=25.06 Aligned_cols=42 Identities=14% Similarity=0.196 Sum_probs=29.9
Q ss_pred EEEecCCceeEEEEeecCCCChHHHHHHHHHHHhhCCccCCCcee
Q 039975 38 AVYVGERQKKRFIIPVSFLNQPSFQELLSKAEEEFGFNHPMGGLT 82 (100)
Q Consensus 38 ~VyVG~~~~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~~~~G~L~ 82 (100)
.+++.... +|+.|.+. ..-.+.++|++|-+.||++.+...|.
T Consensus 12 v~Vl~~n~-rr~~VKvt--p~t~L~~VL~eaC~K~gl~~~~~~Lk 53 (90)
T 2al3_A 12 VSVLAPNG-RRHTVKVT--PSTVLLQVLEDTCRRQDFNPSEYDLK 53 (90)
T ss_dssp EEEECTTS-CEEEECCC--TTSBHHHHHHHHHHHTTCCGGGCEEE
T ss_pred EEEEcCCC-cEEEEEEC--CCCCHHHHHHHHHHHhCCChhhCeEE
Confidence 34444444 88999883 34468899999999999986644443
No 2
>1und_A Advillin, P92; actin binding, F-actin binding, cytoskeleton, headpiece subdomain; NMR {Homo sapiens} SCOP: a.14.1.1
Probab=60.58 E-value=2.4 Score=23.47 Aligned_cols=20 Identities=15% Similarity=0.497 Sum_probs=17.5
Q ss_pred cCCCChHHHHHHHHHHHhhC
Q 039975 54 SFLNQPSFQELLSKAEEEFG 73 (100)
Q Consensus 54 ~yL~hP~F~~LL~~aeeEfG 73 (100)
.||+.-.|++++.++.+||-
T Consensus 1 ~yLsd~dF~~vFgmsr~eF~ 20 (37)
T 1und_A 1 XYLSEQDFVSVFGITRGQFA 20 (37)
T ss_dssp -CCCHHHHHHHHSSCHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHH
Confidence 48999999999999999983
No 3
>1y74_B MLIN-2/CASK, peripheral plasma membrane protein CASK; L27 domain, scaffold protein, protein assembly, cell polarity, transport protein; NMR {Mus musculus} SCOP: a.194.1.1 PDB: 1zl8_B
Probab=57.41 E-value=4.4 Score=23.00 Aligned_cols=20 Identities=40% Similarity=0.662 Sum_probs=15.6
Q ss_pred cCCCChHHHHHHHH----HHHhhC
Q 039975 54 SFLNQPSFQELLSK----AEEEFG 73 (100)
Q Consensus 54 ~yL~hP~F~~LL~~----aeeEfG 73 (100)
..|+.|.||+||+- |.++||
T Consensus 26 ~lL~~PHfqaLl~ahD~Va~~~y~ 49 (50)
T 1y74_B 26 RILTQPHFMALLQTHDVVAHEVYS 49 (50)
T ss_dssp HHHHSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHcCHHHHHHHHHHHHHHHHHhc
Confidence 56889999999975 566664
No 4
>3bux_B E3 ubiquitin-protein ligase CBL; TKB, signal transduction, proto-oncogene, complex, ATP-binding, glycoprotein, kinase, membrane, nucleotide-binding; HET: PTR; 1.35A {Homo sapiens} SCOP: a.39.1.7 a.48.1.1 d.93.1.1 PDB: 1yvh_A* 3bun_B* 3buo_B* 3bum_B* 3buw_B* 3ob1_B* 3ob2_B* 3plf_B* 2cbl_A* 1b47_A 3pfv_A*
Probab=50.85 E-value=16 Score=28.98 Aligned_cols=39 Identities=31% Similarity=0.368 Sum_probs=31.1
Q ss_pred CCCCceEEE-EecCCceeEEEEeecCCCChHHHHHHHHHHHhh
Q 039975 31 DVPKGYLAV-YVGERQKKRFIIPVSFLNQPSFQELLSKAEEEF 72 (100)
Q Consensus 31 ~vpkG~~~V-yVG~~~~~RfvVp~~yL~hP~F~~LL~~aeeEf 72 (100)
...-|..|| ||-.+. =++.+-=.|-|++|+|++-.+|-|
T Consensus 275 cTrlGqwAIgyV~~~~---~I~qtip~nk~l~qal~dg~~eg~ 314 (329)
T 3bux_B 275 CTRLGQWAIGYVTADG---NILQTIPHNKPLFQALIDGFREGF 314 (329)
T ss_dssp SSSTTSEEEEEECTTS---CEEEECCSSCCHHHHHHHHHHHTS
T ss_pred cCccCceEEEEECCCC---ceeeeCCCCcHHHHHHHhccccce
Confidence 457899999 998764 355555689999999999999875
No 5
>2xko_C PIPX, global nitrogen regulator; transcription, nitrogen assimilation, CRP/FNR superfamily, 2-oxoglutarate, global nitrogen controller; HET: AKG; 2.25A {Synechococcus elongatus} PDB: 2xg8_D*
Probab=42.59 E-value=2.8 Score=27.58 Aligned_cols=11 Identities=45% Similarity=0.948 Sum_probs=8.7
Q ss_pred cCCCChHHHHH
Q 039975 54 SFLNQPSFQEL 64 (100)
Q Consensus 54 ~yL~hP~F~~L 64 (100)
.|||||.|.-|
T Consensus 5 ~YLNHPtFGlL 15 (89)
T 2xko_C 5 NYLNHPTFGLL 15 (89)
T ss_dssp CEEEETTTEEE
T ss_pred ccccCCccchh
Confidence 59999998644
No 6
>3op0_A Signal transduction protein CBL-C; structural genomics, structural genomics consortium, SGC, SI transduction protein, SH3-binding protein; HET: PTR; 2.52A {Homo sapiens}
Probab=42.07 E-value=26 Score=27.79 Aligned_cols=39 Identities=28% Similarity=0.316 Sum_probs=31.8
Q ss_pred CCCCceEEE-EecCCceeEEEEeecCCCChHHHHHHHHHHHhh
Q 039975 31 DVPKGYLAV-YVGERQKKRFIIPVSFLNQPSFQELLSKAEEEF 72 (100)
Q Consensus 31 ~vpkG~~~V-yVG~~~~~RfvVp~~yL~hP~F~~LL~~aeeEf 72 (100)
-...|..|| ||-.+. =++-+-=.|-|++|+|++-.+|-|
T Consensus 260 cTrlGqwAIgYV~s~g---~I~qtip~nk~l~qaL~dG~~eg~ 299 (323)
T 3op0_A 260 CTRLGQWAIGYVSSDG---SILQTIPANKPLSQVLLEGQKDGF 299 (323)
T ss_dssp SSSTTCEEEEEECTTS---CEEEECCCSSCHHHHHHHHHHTTS
T ss_pred cCccCceEEEEEcCCC---ceeecCCCCcHHHHHHHhccccce
Confidence 457899999 998764 356677789999999999998864
No 7
>1z3x_A Putative cytidyltransferase; transferase activator; 1.50A {Thermosynechococcus elongatus} SCOP: a.118.1.22 a.261.1.1 PDB: 1z3y_A
Probab=37.73 E-value=1.5 Score=33.31 Aligned_cols=31 Identities=23% Similarity=0.439 Sum_probs=20.0
Q ss_pred CcCCCCceEEEEecCCceeEEEEeecCCCChHHH
Q 039975 29 SVDVPKGYLAVYVGERQKKRFIIPVSFLNQPSFQ 62 (100)
Q Consensus 29 ~~~vpkG~~~VyVG~~~~~RfvVp~~yL~hP~F~ 62 (100)
...+|+||+|..-.-.. .-+=.+.|+||.|.
T Consensus 207 sl~AP~GHLP~~~~lrG---v~l~~~ll~hpa~~ 237 (238)
T 1z3x_A 207 DLSAPRGHLPLTNQLRG---VQVLNALLNHPAWT 237 (238)
T ss_dssp STTSCTTCCSCCCCTTC---SHHHHHHHTCGGGG
T ss_pred eCCCCCCCCCcCccccc---HHHHHHHHcCcccc
Confidence 34699999998542111 22445788999873
No 8
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=37.47 E-value=32 Score=21.26 Aligned_cols=50 Identities=14% Similarity=0.216 Sum_probs=36.4
Q ss_pred EEEEecCCceeEEEEeecCC--CChHHHHHHHHHHHhhCCccCCCceeee---ccHHHHHHHHHhh
Q 039975 37 LAVYVGERQKKRFIIPVSFL--NQPSFQELLSKAEEEFGFNHPMGGLTIP---CKEKLFIDITSSL 97 (100)
Q Consensus 37 ~~VyVG~~~~~RfvVp~~yL--~hP~F~~LL~~aeeEfG~~~~~G~L~IP---C~~~~Fe~vl~~l 97 (100)
+.+.||+ ++|-+.-..| ..|.|++++... . + ..+.|+ .+.+.|+.++.-+
T Consensus 25 v~l~v~~---~~~~aHk~vLaa~S~yF~~~f~~~------~-~-~~i~l~~~~~~~~~f~~ll~~~ 79 (116)
T 2vpk_A 25 CTIVIGE---FQFKAHRNVLASFSEYFGAIYRST------S-E-NNVFLDQSQVKADGFQKLLEFI 79 (116)
T ss_dssp EEEEETT---EEEEECHHHHHHHCHHHHHHHTTC------C-C-SCEECCTTTCCHHHHHHHHHHH
T ss_pred EEEEECC---EEEeccHHHHhhcCHHHHHHHcCC------C-C-CeEEeecCCCCHHHHHHHHHHH
Confidence 3456664 4577777776 679999998754 2 3 678888 7889999988754
No 9
>1yu8_X Villin; alpha helix, 3-10 helix, structural protein; 1.45A {Gallus gallus} SCOP: a.14.1.1 PDB: 1qqv_A 1yu5_X 2rjx_A 2rjy_A 1yu7_X 2rjv_A 2rjw_A 3nkj_A 3myc_A 3mya_A 3mye_X 1unc_A
Probab=36.96 E-value=9.4 Score=23.61 Aligned_cols=20 Identities=15% Similarity=0.444 Sum_probs=18.5
Q ss_pred cCCCChHHHHHHHHHHHhhC
Q 039975 54 SFLNQPSFQELLSKAEEEFG 73 (100)
Q Consensus 54 ~yL~hP~F~~LL~~aeeEfG 73 (100)
.||+.-.|++++.++.+||-
T Consensus 31 ~yLsdedF~~vFgms~~eF~ 50 (67)
T 1yu8_X 31 NHLSDEDFKAVFGMTRSAFA 50 (67)
T ss_dssp GGSCHHHHHHHHSSCHHHHH
T ss_pred hcCCHHHHHHHHCcCHHHHH
Confidence 69999999999999999984
No 10
>1y6i_A Mg-chelatase cofactor GUN4; helix-bundle, porphyrin binding, ligand binding protein; 1.78A {Synechocystis SP} SCOP: a.118.1.22 a.261.1.1
Probab=36.03 E-value=2.1 Score=32.41 Aligned_cols=31 Identities=23% Similarity=0.440 Sum_probs=20.5
Q ss_pred CcCCCCceEEEEecCCceeEEEEeecCCCChHHH
Q 039975 29 SVDVPKGYLAVYVGERQKKRFIIPVSFLNQPSFQ 62 (100)
Q Consensus 29 ~~~vpkG~~~VyVG~~~~~RfvVp~~yL~hP~F~ 62 (100)
...+|+||+|..-.-.. -| +=.+.|+||.|.
T Consensus 199 ~l~AP~GHLP~~~~lrG-~~--l~~~ll~hpa~~ 229 (233)
T 1y6i_A 199 DLSAPQGHLPLLNQLRG-VR--VAESLYRHPVWS 229 (233)
T ss_dssp STTSCTTCCSCCCCTTC-TH--HHHHHHTSTHHH
T ss_pred eCCCCCCCCCCccccch-HH--HHHHHHCCcccc
Confidence 34699999998642211 11 446789999884
No 11
>1ujs_A Actin-binding LIM protein homologue; VHP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 2l3x_A
Probab=34.77 E-value=12 Score=24.31 Aligned_cols=20 Identities=25% Similarity=0.428 Sum_probs=18.8
Q ss_pred cCCCChHHHHHHHHHHHhhC
Q 039975 54 SFLNQPSFQELLSKAEEEFG 73 (100)
Q Consensus 54 ~yL~hP~F~~LL~~aeeEfG 73 (100)
.||+.-.|++++.++.+||-
T Consensus 46 ~YLSdedF~~vFgMsr~eF~ 65 (88)
T 1ujs_A 46 RHLSQEEFYQVFGMTISEFD 65 (88)
T ss_dssp GGSCTTHHHHHHSSCHHHHT
T ss_pred hcCCHHHHHHHHCcCHHHHH
Confidence 69999999999999999985
No 12
>1qzp_A Dematin; villin headpiece, actin binding domain, protein binding; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 1zv6_A
Probab=32.87 E-value=8.2 Score=23.83 Aligned_cols=20 Identities=30% Similarity=0.615 Sum_probs=18.4
Q ss_pred cCCCChHHHHHHHHHHHhhC
Q 039975 54 SFLNQPSFQELLSKAEEEFG 73 (100)
Q Consensus 54 ~yL~hP~F~~LL~~aeeEfG 73 (100)
.||+.-.|++++.++.+||-
T Consensus 32 ~yLsdedF~~vFgmsr~eF~ 51 (68)
T 1qzp_A 32 RHLSAEDFSRVFAMSPEEFG 51 (68)
T ss_dssp GGBCHHHHHHHSSSCHHHHH
T ss_pred hhCCHHHHHHHHCcCHHHHH
Confidence 69999999999999999983
No 13
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=31.81 E-value=33 Score=21.56 Aligned_cols=53 Identities=11% Similarity=0.197 Sum_probs=38.5
Q ss_pred EEEEecCCceeEEEEeecCC--CChHHHHHHHHHHHhhCCccCCCceee-e-ccHHHHHHHHHhh
Q 039975 37 LAVYVGERQKKRFIIPVSFL--NQPSFQELLSKAEEEFGFNHPMGGLTI-P-CKEKLFIDITSSL 97 (100)
Q Consensus 37 ~~VyVG~~~~~RfvVp~~yL--~hP~F~~LL~~aeeEfG~~~~~G~L~I-P-C~~~~Fe~vl~~l 97 (100)
+.+.||+ ++|-+.-..| ..|.|++++...-.| .. ..|.| + .+.+.|+.++.-+
T Consensus 32 v~l~v~~---~~~~aHk~iLaa~S~~F~~~f~~~~~e----~~-~~i~l~~~~~~~~f~~ll~~~ 88 (127)
T 1r29_A 32 VVIVVSR---EQFRAHKTVLMACSGLFYSIFTDQLKR----NL-SVINLDPEINPEGFNILLDFM 88 (127)
T ss_dssp EEEEETT---EEEEECHHHHHHHCHHHHHHHTSTTTT----TC-SEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECC---EEEehHHHHHHHhCHHHHHHhcCCccC----CC-CEEEeCCCCCHHHHHHHHHHH
Confidence 4456664 4577777777 689999999865444 23 68999 4 6889999988754
No 14
>2k6m_S Supervillin; SVHP, HP, headpiece, archvillin, actin capping, actin-binding, alternative splicing, calcium, cytoplasm, cytoskeleton, membrane; NMR {Homo sapiens} PDB: 2k6n_A
Probab=31.36 E-value=10 Score=23.39 Aligned_cols=21 Identities=19% Similarity=0.419 Sum_probs=19.1
Q ss_pred ecCCCChHHHHHHHHHHHhhC
Q 039975 53 VSFLNQPSFQELLSKAEEEFG 73 (100)
Q Consensus 53 ~~yL~hP~F~~LL~~aeeEfG 73 (100)
-.||+.-.|++++.++.+||-
T Consensus 30 E~yLsdedF~~vFgmsr~eF~ 50 (67)
T 2k6m_S 30 EIYLTDEDFEFALDMTRDEYN 50 (67)
T ss_dssp GGGSCHHHHHHHTSSCHHHHT
T ss_pred HhhCCHHHHHHHHCcCHHHHH
Confidence 369999999999999999985
No 15
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=30.68 E-value=58 Score=20.52 Aligned_cols=50 Identities=20% Similarity=0.325 Sum_probs=36.7
Q ss_pred EEEEecCCceeEEEEeecCCC--ChHHHHHHHHHHHhhCCccCCCceeee--ccHHHHHHHHHhh
Q 039975 37 LAVYVGERQKKRFIIPVSFLN--QPSFQELLSKAEEEFGFNHPMGGLTIP--CKEKLFIDITSSL 97 (100)
Q Consensus 37 ~~VyVG~~~~~RfvVp~~yL~--hP~F~~LL~~aeeEfG~~~~~G~L~IP--C~~~~Fe~vl~~l 97 (100)
+.+.||+ ++|-+.-..|. .|.|++++... .. ..|.|| .+.+.|+.++.-+
T Consensus 36 v~l~v~~---~~~~~Hk~vLaa~S~~F~~~f~~~-------~~-~~i~l~~~~~~~~f~~ll~~i 89 (129)
T 3ga1_A 36 VSVVVKG---HAFKAHRAVLAASSSYFRDLFNNS-------RS-AVVELPAAVQPQSFQQILSFC 89 (129)
T ss_dssp EEEEETT---EEEEECHHHHHHHBHHHHHHHHHC-------CC-SEEECCTTCCHHHHHHHHHHH
T ss_pred eEEEECC---EEEEehHHHHHHcCHHHHHHHcCC-------CC-CEEEECCCCCHHHHHHHHHHH
Confidence 4566764 45776666654 68999998875 23 689997 8899999998754
No 16
>2lkt_A Retinoic acid receptor responder protein 3; TIG3, human tumor suppressor II family, NLPC/P60, hydrolase; NMR {Homo sapiens}
Probab=30.41 E-value=35 Score=22.13 Aligned_cols=9 Identities=33% Similarity=0.759 Sum_probs=8.4
Q ss_pred eEEEEecCC
Q 039975 36 YLAVYVGER 44 (100)
Q Consensus 36 ~~~VyVG~~ 44 (100)
|.+||||+.
T Consensus 23 H~gIYvGdg 31 (125)
T 2lkt_A 23 HWALYIGDG 31 (125)
T ss_dssp EEEEEEETT
T ss_pred EEEEEeCCC
Confidence 899999997
No 17
>3n5b_B ASR0485 protein; PII, PIPX, transcription regulator, signal transducer; HET: ADP; 1.90A {Nostoc}
Probab=29.80 E-value=5.9 Score=27.00 Aligned_cols=28 Identities=25% Similarity=0.381 Sum_probs=9.4
Q ss_pred CCcCCCCceEEEEecCCceeEEEEeecCCCChHHHHH
Q 039975 28 KSVDVPKGYLAVYVGERQKKRFIIPVSFLNQPSFQEL 64 (100)
Q Consensus 28 ~~~~vpkG~~~VyVG~~~~~RfvVp~~yL~hP~F~~L 64 (100)
.+.-||+|..---+..| .|||||.|.-|
T Consensus 11 ~~~~~~~~~~~~~ms~E---------~YLNHPTFGLL 38 (112)
T 3n5b_B 11 SSGLVPRGSHMNPENSE---------TYINHPTWGLL 38 (112)
T ss_dssp ---------------CC---------CEEEETTTEEE
T ss_pred cCCcccCCccCCCcchh---------hhccCCccchh
Confidence 34567777654333333 39999998654
No 18
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Probab=29.45 E-value=55 Score=22.25 Aligned_cols=61 Identities=21% Similarity=0.266 Sum_probs=42.7
Q ss_pred CCceEEEEecCCceeEEEEeecCC-CChHHHHHHHHHHHhhCCccCCCceeeeccHHHHHHHHHhhc
Q 039975 33 PKGYLAVYVGERQKKRFIIPVSFL-NQPSFQELLSKAEEEFGFNHPMGGLTIPCKEKLFIDITSSLN 98 (100)
Q Consensus 33 pkG~~~VyVG~~~~~RfvVp~~yL-~hP~F~~LL~~aeeEfG~~~~~G~L~IPC~~~~Fe~vl~~l~ 98 (100)
....+.+-||. .||.+..+-| ++|. .+|..++...-++.+.|.+-|-.+-..|++||.-++
T Consensus 33 ~~~~V~LNVGG---~~F~T~~~TL~~~P~--S~L~~~~~~~~~~~~~g~yFiDRdp~~F~~ILnflR 94 (140)
T 2nz0_B 33 QDELIVLNVSG---RRFQTWRTTLERYPD--TLLGSTEKEFFFNEDTKEYFFDRDPEVFRCVLNFYR 94 (140)
T ss_dssp CCCEEEEEETT---EEEEEEHHHHHTCTT--STTTSGGGGGSEETTTTEEEECSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECC---EEEEeeHHHHhcCCC--eeecccCCcccccCCCCeEEEeCCcHHHHHHHHHHh
Confidence 45678888997 5698887765 3332 133334444445555699999999999999998765
No 19
>1pzq_A Erythronolide synthase; four helix bundle, homodimer, transferase; NMR {Saccharopolyspora erythraea} SCOP: a.34.3.1
Probab=29.37 E-value=30 Score=20.65 Aligned_cols=15 Identities=13% Similarity=0.188 Sum_probs=11.7
Q ss_pred HHHHHHhhhhhhccc
Q 039975 10 HAKQILRQSKLCASQ 24 (100)
Q Consensus 10 ~~k~~l~r~~~~~~~ 24 (100)
++.++||||++....
T Consensus 36 rlesllrrwnsrrad 50 (60)
T 1pzq_A 36 RLESLLRRWNSRRAD 50 (60)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhcccC
Confidence 678899999987443
No 20
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2
Probab=29.07 E-value=30 Score=23.00 Aligned_cols=61 Identities=21% Similarity=0.269 Sum_probs=42.2
Q ss_pred CCceEEEEecCCceeEEEEeecCCC-ChHHHHHHHHHHHhhCCccCCCceeeeccHHHHHHHHHhhc
Q 039975 33 PKGYLAVYVGERQKKRFIIPVSFLN-QPSFQELLSKAEEEFGFNHPMGGLTIPCKEKLFIDITSSLN 98 (100)
Q Consensus 33 pkG~~~VyVG~~~~~RfvVp~~yL~-hP~F~~LL~~aeeEfG~~~~~G~L~IPC~~~~Fe~vl~~l~ 98 (100)
....+.+-||. .||.+..+-|. +|- .+|..++...-++.+.|.+-|-.+-..|+.||.-++
T Consensus 11 ~~~~V~LNVGG---~~F~t~~~TL~~~p~--S~L~~~~~~~~~~~~~g~~FiDRdp~~F~~ILnflR 72 (124)
T 1s1g_A 11 QDELIVLNVSG---RRFQTWRTTLERYPD--TLLGSTEKEFFFNEDTKEYFFDRDPEVFRCVLNFYR 72 (124)
T ss_dssp -CCEEEEEETT---EEEEEEHHHHTTSTT--SSTTSSGGGGTBCSSSCSEEECSCHHHHHHHHHHHH
T ss_pred CCCEEEEEeCC---EEEEEeHHHHhcCCC--ceecccCCcccccCCCCcEEEcCChHHHHHHHHHHh
Confidence 45678888996 56998887663 332 133334444445555699999999999999998765
No 21
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=28.83 E-value=80 Score=18.92 Aligned_cols=56 Identities=14% Similarity=0.210 Sum_probs=36.9
Q ss_pred EEEEecCC-ceeEEEEeecCC--CChHHHHHHHHHHHhhCCccCCCceeee-ccHHHHHHHHHhh
Q 039975 37 LAVYVGER-QKKRFIIPVSFL--NQPSFQELLSKAEEEFGFNHPMGGLTIP-CKEKLFIDITSSL 97 (100)
Q Consensus 37 ~~VyVG~~-~~~RfvVp~~yL--~hP~F~~LL~~aeeEfG~~~~~G~L~IP-C~~~~Fe~vl~~l 97 (100)
+.+.||++ ..++|-+.-..| ..|.|++++...-.|-. ..|.|| .+.+.|+.++.-+
T Consensus 11 v~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~~-----~~i~l~~~~~~~f~~~l~~i 70 (109)
T 2vkp_A 11 VHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVK-----SEIHIPDVEPAAFLILLKYM 70 (109)
T ss_dssp EEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC------C-----CEEEETTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccCC-----CeEEeCCCCHHHHHHHHHHH
Confidence 45667662 126788888887 68999999975433322 468887 6889999988754
No 22
>3qli_A Coenzyme A transferase; COEN transferase; 1.90A {Yersinia pestis} PDB: 3qlk_A 3s8d_A
Probab=26.38 E-value=38 Score=27.55 Aligned_cols=43 Identities=21% Similarity=0.352 Sum_probs=28.8
Q ss_pred CCCCceEEEEecC---------CceeEEEEeecCCCChHHHHHHHHHHHhhCC
Q 039975 31 DVPKGYLAVYVGE---------RQKKRFIIPVSFLNQPSFQELLSKAEEEFGF 74 (100)
Q Consensus 31 ~vpkG~~~VyVG~---------~~~~RfvVp~~yL~hP~F~~LL~~aeeEfG~ 74 (100)
..|++++-+.|-| ..++|-.-=++ +.||.||+.|.+++++.|+
T Consensus 403 tt~~~~v~~vvTE~Gva~l~G~s~~eRa~~lI~-iAHPdfR~~L~~~A~~~~~ 454 (455)
T 3qli_A 403 TTPRIDTHYIVTEFGAVNLKGLSSTERALRIIE-LAHPDFRDELTQAAKKMHL 454 (455)
T ss_dssp SBCTTTCCEEEETTEEEECTTCCHHHHHHHHHT-TSCHHHHHHHHHHHHHTTC
T ss_pred ccCcccccEEEeccEEEECCCCCHHHHHHHHHH-ccCcchHHHHHHHHHHcCC
Confidence 4577777766644 11234333334 8999999999998888764
No 23
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=23.87 E-value=93 Score=19.09 Aligned_cols=54 Identities=13% Similarity=0.150 Sum_probs=35.8
Q ss_pred EEEEecCCceeEEEEeecCC--CChHHHHHHHHHHHhhCCccCCCceeee-ccHHHHHHHHHhh
Q 039975 37 LAVYVGERQKKRFIIPVSFL--NQPSFQELLSKAEEEFGFNHPMGGLTIP-CKEKLFIDITSSL 97 (100)
Q Consensus 37 ~~VyVG~~~~~RfvVp~~yL--~hP~F~~LL~~aeeEfG~~~~~G~L~IP-C~~~~Fe~vl~~l 97 (100)
+.+.||+ ++|-+.-..| ..|.|++++...-.|- .. ..|.|+ .+.+.|+.++.-+
T Consensus 28 v~l~v~~---~~~~aHk~vLaa~S~~F~~~f~~~~~e~---~~-~~i~l~~~~~~~f~~ll~~~ 84 (120)
T 2if5_A 28 VVILVEG---REFPTHRSVLAACSQYFKKLFTSGAVVD---QQ-NVYEIDFVSAEALTALMDFA 84 (120)
T ss_dssp EEEEETT---EEEEECHHHHHHHCHHHHHHHHC--------CC-SEEECCSSCHHHHHHHHHHH
T ss_pred eEEEECC---EEEeHHHHHHHHhCHHHHHHhcCCcccc---CC-ceEEeCCCCHHHHHHHHHHH
Confidence 4456664 5577777777 4899999997543332 22 678888 6889999988754
No 24
>3h43_A Proteasome-activating nucleotidase; regulatory particle, nucleosidase, ATP-binding, cytoplasm, nucleotide-binding, hydrolase; 2.10A {Methanocaldococcus jannaschii}
Probab=23.74 E-value=60 Score=20.28 Aligned_cols=47 Identities=13% Similarity=0.056 Sum_probs=27.9
Q ss_pred hhHHHHHHHhhhhhhccccCCCCcCCCCceEEEEecCCceeEEEEeecC
Q 039975 7 GIMHAKQILRQSKLCASQATSKSVDVPKGYLAVYVGERQKKRFIIPVSF 55 (100)
Q Consensus 7 ~l~~~k~~l~r~~~~~~~~~~~~~~vpkG~~~VyVG~~~~~RfvVp~~y 55 (100)
.+.++|.-+++..+..-.-..--.....+++-|..+.+ .+|+|+++=
T Consensus 3 ev~~lkeei~~L~~~P~~vG~v~e~~dd~~~iVkss~g--~~~~V~v~~ 49 (85)
T 3h43_A 3 ENEILRRELDRMRVPPLIVGTVVDKVGERKVVVKSSTG--PSFLVNVSH 49 (85)
T ss_dssp HHHHHHHHHHHHHSCCEEEEEEEEEEETTEEEEEETTS--SEEEEEBCT
T ss_pred HHHHHHHHHHHhcCCCceEEEEEEEcCCCEEEEEeCCC--CeEEEEecC
Confidence 35677777777664422111112234567888877665 679998763
No 25
>3ezo_A Malonyl COA-acyl carrier protein transacylase; ssgcid, acyl-carrier-protein S-malonyltransferase, acyltransferase, transferase; 2.05A {Burkholderia pseudomallei 1710B}
Probab=23.62 E-value=50 Score=24.66 Aligned_cols=40 Identities=18% Similarity=0.331 Sum_probs=26.6
Q ss_pred ceEEEEecCCceeEEEEeecCCCChHHHHHHHHHHHhhCCc
Q 039975 35 GYLAVYVGERQKKRFIIPVSFLNQPSFQELLSKAEEEFGFN 75 (100)
Q Consensus 35 G~~~VyVG~~~~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~ 75 (100)
-..-|+-|++. +..=.--+.+++|.|++.++++.+-+|++
T Consensus 10 ~~~f~F~GQGs-Q~~gMg~~L~~~p~fr~~~~~~~~~lg~~ 49 (318)
T 3ezo_A 10 KFAFVFPGQGS-QSVGMLNAFADVAVVRETLDEASDALGQD 49 (318)
T ss_dssp CEEEEECCTTC-CCTTTTGGGTTCHHHHHHHHHHHHHHSSC
T ss_pred CeEEEECCcch-hhhhHHHHHhhCHHHHHHHHHHHHHhCCC
Confidence 35566777642 21111223338999999999999999875
No 26
>1zav_U 50S ribosomal protein L7/L12; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: a.108.1.1 PDB: 1zaw_U 1zax_U 1dd3_C
Probab=23.52 E-value=51 Score=17.10 Aligned_cols=13 Identities=46% Similarity=0.882 Sum_probs=10.5
Q ss_pred HHHHHHHHHHhhC
Q 039975 61 FQELLSKAEEEFG 73 (100)
Q Consensus 61 F~~LL~~aeeEfG 73 (100)
..+|.+.-||+||
T Consensus 18 l~eLvk~lEe~fG 30 (30)
T 1zav_U 18 LAELVKKLEDKFG 30 (30)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhC
Confidence 4678888899998
No 27
>3pmi_A PWWP domain-containing protein MUM1; structural genomics consortium, SGC, protein binding, nucLeu; HET: UNL; 2.82A {Homo sapiens}
Probab=23.24 E-value=25 Score=24.53 Aligned_cols=27 Identities=33% Similarity=0.492 Sum_probs=23.6
Q ss_pred eEEEEeecCCCCh---HHHHHHHHHHHhhC
Q 039975 47 KRFIIPVSFLNQP---SFQELLSKAEEEFG 73 (100)
Q Consensus 47 ~RfvVp~~yL~hP---~F~~LL~~aeeEfG 73 (100)
+=|-||+.-|+|= .-++|+++|.|.|+
T Consensus 49 rGi~V~LrrLK~fDC~ek~~L~~rAre~Y~ 78 (134)
T 3pmi_A 49 KGFTVSLKSLKHFDCKEKQTLLNQAREDFN 78 (134)
T ss_dssp CCEEEEGGGCEETTSTTHHHHHHHHTTTCH
T ss_pred CceEeEcccCCCCChHhHHHHHHHHHHHhc
Confidence 6799999888774 58999999999998
No 28
>1wy3_A Villin; structural protein; HET: NLE; 0.95A {Synthetic} PDB: 1wy4_A 1yri_A* 1yrf_A* 2f4k_A* 1vii_A 3trv_A* 3trw_A 3tjw_B* 3trv_B* 3try_A* 2ppz_A 2jm0_A* 3tjw_A* 3iur_B*
Probab=23.09 E-value=22 Score=19.23 Aligned_cols=18 Identities=17% Similarity=0.479 Sum_probs=13.8
Q ss_pred CCChHHHHHHHHHHHhhC
Q 039975 56 LNQPSFQELLSKAEEEFG 73 (100)
Q Consensus 56 L~hP~F~~LL~~aeeEfG 73 (100)
|+.-.|++++.++.+||-
T Consensus 1 Lsd~dF~~vFgmsr~eF~ 18 (35)
T 1wy3_A 1 LSDEDFKAVFGMTRSAFA 18 (35)
T ss_dssp CCHHHHHHHHSSCHHHHH
T ss_pred CCHHHHHHHHCCCHHHHH
Confidence 456678888888888873
No 29
>2ccq_A P97, peptide N-glycanase homolog; glycoprotein; 1.6A {Homo sapiens} SCOP: d.314.1.1 PDB: 2hpl_A 2hpj_A 2cm0_A
Probab=22.85 E-value=66 Score=20.67 Aligned_cols=44 Identities=18% Similarity=0.237 Sum_probs=29.9
Q ss_pred CCCChHHHHHHHHH------HHhhCCccCCCceeee--ccHHHHHHHHHhhc
Q 039975 55 FLNQPSFQELLSKA------EEEFGFNHPMGGLTIP--CKEKLFIDITSSLN 98 (100)
Q Consensus 55 yL~hP~F~~LL~~a------eeEfG~~~~~G~L~IP--C~~~~Fe~vl~~l~ 98 (100)
-+++|.|++=+... =+..||...++.+++| +++...+++...|.
T Consensus 45 r~~N~~f~~~v~~~~G~~e~L~a~GF~~~~~~l~lp~~~~~~~l~~~~d~l~ 96 (99)
T 2ccq_A 45 RIGNTAFSTRLLPVRGAVECLFEMGFEEGETHLIFPKKASVEQLQKIRDLIA 96 (99)
T ss_dssp ETTCHHHHHHTTTSTTHHHHHHHHTCEECSSEEECCTTSCHHHHHHHHHHHH
T ss_pred ecCCHHHHHHhcCCccHHHHHHHccceeCCCeeecCCCCCHHHHHHHHHHHH
Confidence 36788888855432 1357999776789998 66666666665553
No 30
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=21.81 E-value=1.6e+02 Score=18.50 Aligned_cols=60 Identities=17% Similarity=0.268 Sum_probs=41.7
Q ss_pred CceEEEEecCCceeEEEEeecCCC-Ch--HHHHHHHHHHHhhC--CccCCCceeeeccHHHHHHHHHhhc
Q 039975 34 KGYLAVYVGERQKKRFIIPVSFLN-QP--SFQELLSKAEEEFG--FNHPMGGLTIPCKEKLFIDITSSLN 98 (100)
Q Consensus 34 kG~~~VyVG~~~~~RfvVp~~yL~-hP--~F~~LL~~aeeEfG--~~~~~G~L~IPC~~~~Fe~vl~~l~ 98 (100)
...+.+-||. ++|.+..+-|. +| .|..+... ..++. .+. .|.+-|-.+...|++||.-++
T Consensus 5 ~~~v~LNVGG---~~f~t~~~TL~~~p~s~L~~~~~~-~~~~~~~~d~-~~~~fiDRdp~~F~~IL~~lr 69 (107)
T 3drz_A 5 SKWVRLNVGG---TYFLTTRQTLCRDPKSFLYRLCQA-DPDLDSDKDE-TGAYLIDRDPTYFGPVLNYLR 69 (107)
T ss_dssp CCEEEEEETT---EEEEEEHHHHTSSTTSHHHHHHTT-CGGGGGGBCT-TSCEEECSCHHHHHHHHHHHH
T ss_pred CCEEEEEECC---EEEEECHHHHhcCCCcchhHHHhc-CCCCCcCCCC-CceEEecCChHHHHHHHHHhC
Confidence 3467788996 56999887775 44 46666432 12332 233 489999999999999998765
No 31
>2ybf_B E3 ubiquitin-protein ligase RAD18; E2 ubiquitin conjugating enzyme, E3 ubiquitin ligase translesion synthesis, PCNA ubiquitination; 2.00A {Homo sapiens}
Probab=20.82 E-value=45 Score=17.23 Aligned_cols=15 Identities=27% Similarity=0.558 Sum_probs=12.1
Q ss_pred ChHHHHHHHHHHHhh
Q 039975 58 QPSFQELLSKAEEEF 72 (100)
Q Consensus 58 hP~F~~LL~~aeeEf 72 (100)
...||-|+++|...|
T Consensus 8 qneFq~LVDqakk~y 22 (27)
T 2ybf_B 8 KSEFQLLVDQARKGY 22 (27)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHH
Confidence 357999999998765
No 32
>1o51_A Hypothetical protein TM0021; ferredoxin-like fold, structural genomics, joint center for structural genomics, JCSG; HET: ADP; 2.50A {Thermotoga maritima} SCOP: d.58.5.4
Probab=20.64 E-value=1.3e+02 Score=19.66 Aligned_cols=28 Identities=32% Similarity=0.632 Sum_probs=22.2
Q ss_pred eEEEEecCCceeEEEEeecCCCChHHHHHHHHHHHh
Q 039975 36 YLAVYVGERQKKRFIIPVSFLNQPSFQELLSKAEEE 71 (100)
Q Consensus 36 ~~~VyVG~~~~~RfvVp~~yL~hP~F~~LL~~aeeE 71 (100)
.+.+|+|+++ |+ =+.|+...|++.+.+.
T Consensus 15 ~Lriy~~E~~--~~------~g~pL~~~Iv~~~~~~ 42 (114)
T 1o51_A 15 LLKIYLGEKD--KH------SGKPLFEYLVKRAYEL 42 (114)
T ss_dssp EEEEEEETTC--EE------TTEEHHHHHHHHHHHT
T ss_pred EEEEEECCcc--cc------CCeEHHHHHHHHHHHC
Confidence 3678999974 33 3889999999999875
Done!