Query 039976
Match_columns 438
No_of_seqs 253 out of 1148
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 05:39:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039976.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039976hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gcc_A Ethylene responsive ele 99.9 5.4E-24 1.8E-28 165.9 6.1 61 190-250 1-62 (63)
2 3igm_B PF14_0633 protein; AP2 78.1 1.6 5.3E-05 35.8 3.2 27 188-216 4-31 (77)
3 1u3e_M HNH homing endonuclease 71.5 0.58 2E-05 41.3 -0.9 38 192-232 109-146 (174)
4 1z1b_A Integrase; protein-DNA 70.1 4.4 0.00015 37.2 4.6 42 193-238 14-55 (356)
5 3jtz_A Integrase; four strande 44.1 43 0.0015 26.9 5.7 44 195-238 28-75 (88)
6 1x60_A Sporulation-specific N- 29.8 37 0.0013 25.6 3.0 23 214-236 46-68 (79)
7 1uta_A FTSN, MSGA, cell divisi 27.8 84 0.0029 23.9 4.7 24 213-236 45-68 (81)
8 3ju0_A Phage integrase; four s 26.1 99 0.0034 25.7 5.2 44 195-238 28-75 (108)
9 1b69_A Protein (integrase); in 26.0 78 0.0027 25.2 4.3 27 189-216 9-35 (69)
10 2ftc_I Mitochondrial ribosomal 23.7 1E+02 0.0034 26.4 4.9 35 203-239 80-114 (118)
No 1
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=99.89 E-value=5.4e-24 Score=165.89 Aligned_cols=61 Identities=69% Similarity=1.148 Sum_probs=57.5
Q ss_pred CceeeeEECCCCcEEEEEeecC-CCeEEeeCCCCCHHHHHHHHHHHHHHhhCCCCCCCCCcc
Q 039976 190 KLYRGVRQRHWGKWVAEIRLPR-NRTRLWLGTFDRAEDAALAYDREAFKLRGENARLNFPEL 250 (438)
Q Consensus 190 S~YRGVR~R~~GKW~AeIr~p~-~gKRiwLGTFdTaEEAArAYDrAAiklrG~~A~lNFP~~ 250 (438)
.+||||++++||||+|+|+++. +|+++|||||+|+||||+|||.|+++++|.++++|||++
T Consensus 1 ~~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~ 62 (63)
T 1gcc_A 1 KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR 62 (63)
T ss_dssp CCCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred CCcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence 3799999989999999999986 479999999999999999999999999999999999975
No 2
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=78.11 E-value=1.6 Score=35.80 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=21.1
Q ss_pred CCCceeeeEE-CCCCcEEEEEeecCCCeEE
Q 039976 188 TTKLYRGVRQ-RHWGKWVAEIRLPRNRTRL 216 (438)
Q Consensus 188 nsS~YRGVR~-R~~GKW~AeIr~p~~gKRi 216 (438)
.+|+|.||++ .+.+.|.|.-.+ +|++.
T Consensus 4 ~~Sg~pGVsw~kR~~~WlA~W~e--~g~rr 31 (77)
T 3igm_B 4 MSSGYPGVSWNKRMCAWLAFFYD--GASRR 31 (77)
T ss_dssp CCSSSTTEEEETTTTEEEEEEEE--TTEEE
T ss_pred CCCCCCcEEeecCCceEEEEEec--CCeEe
Confidence 4699999964 457999999997 56554
No 3
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=71.48 E-value=0.58 Score=41.34 Aligned_cols=38 Identities=5% Similarity=-0.095 Sum_probs=28.9
Q ss_pred eeeeEECCCCcEEEEEeecCCCeEEeeCCCCCHHHHHHHHH
Q 039976 192 YRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDRAEDAALAYD 232 (438)
Q Consensus 192 YRGVR~R~~GKW~AeIr~p~~gKRiwLGTFdTaEEAArAYD 232 (438)
++||.....++|.+.|.. + +.++||.|+|.+|||++|.
T Consensus 109 ~~g~~~~~~~k~~~vi~~--~-~~~~~~~f~s~~eAa~~~G 146 (174)
T 1u3e_M 109 SKAQQIAKIKNQKPIIVI--S-PDGIEKEYPSTKCACEELG 146 (174)
T ss_dssp HHHHHHHHHHTCCCEEEE--C-TTSCEEEESCHHHHHHHHT
T ss_pred eeeeeeccCCCCceEEEE--c-CCceEEeeCCHHHHHHHHC
Confidence 456643334678899986 4 5678999999999999965
No 4
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=70.05 E-value=4.4 Score=37.18 Aligned_cols=42 Identities=17% Similarity=0.101 Sum_probs=31.3
Q ss_pred eeeEECCCCcEEEEEeecCCCeEEeeCCCCCHHHHHHHHHHHHHHh
Q 039976 193 RGVRQRHWGKWVAEIRLPRNRTRLWLGTFDRAEDAALAYDREAFKL 238 (438)
Q Consensus 193 RGVR~R~~GKW~AeIr~p~~gKRiwLGTFdTaEEAArAYDrAAikl 238 (438)
.||++++.|.|..++. .+|+++.+|. |..||..+..++...+
T Consensus 14 ~~v~~~~~g~~~~r~~--~~gk~~~~g~--t~~eA~~~a~~~~~~~ 55 (356)
T 1z1b_A 14 PNLYIRNNGYYCYRDP--RTGKEFGLGR--DRRIAITEAIQANIEL 55 (356)
T ss_dssp TTEEEETTTEEEEECT--TTCCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred ccceecCCCeEEEEee--cCCeEEECCC--CHHHHHHHHHHHHHHH
Confidence 4687778899987765 4888999996 8888877766554444
No 5
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=44.13 E-value=43 Score=26.89 Aligned_cols=44 Identities=20% Similarity=0.333 Sum_probs=29.7
Q ss_pred eEECCCC--cEEEEEeecCCCeEEeeCCCC--CHHHHHHHHHHHHHHh
Q 039976 195 VRQRHWG--KWVAEIRLPRNRTRLWLGTFD--RAEDAALAYDREAFKL 238 (438)
Q Consensus 195 VR~R~~G--KW~AeIr~p~~gKRiwLGTFd--TaEEAArAYDrAAikl 238 (438)
|+-++.| .|.-+.+...+.+++-||.|. |.++|....+++...+
T Consensus 28 L~V~psG~K~w~~ryr~~Gk~~~~~LG~yp~~sL~~AR~~a~~~r~~l 75 (88)
T 3jtz_A 28 LLVKPGGSRHWYLKYRISGKESRIALGAYPAISLSDARQQREGIRKML 75 (88)
T ss_dssp EEECTTSCEEEEEEEEETTEEEEEEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred EEEecCCCEEEEEEEEeCCeEEEEEeECCCCCCHHHHHHHHHHHHHHH
Confidence 3445544 488888763344668999997 5888877777665555
No 6
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=29.79 E-value=37 Score=25.60 Aligned_cols=23 Identities=17% Similarity=0.291 Sum_probs=18.6
Q ss_pred eEEeeCCCCCHHHHHHHHHHHHH
Q 039976 214 TRLWLGTFDRAEDAALAYDREAF 236 (438)
Q Consensus 214 KRiwLGTFdTaEEAArAYDrAAi 236 (438)
-||++|.|.+.++|..+-++...
T Consensus 46 yRV~vGpf~~~~~A~~~~~~L~~ 68 (79)
T 1x60_A 46 YKVQIGAFSSKDNADTLAARAKN 68 (79)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHHH
Confidence 46888999999999988776554
No 7
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=27.77 E-value=84 Score=23.95 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=19.1
Q ss_pred CeEEeeCCCCCHHHHHHHHHHHHH
Q 039976 213 RTRLWLGTFDRAEDAALAYDREAF 236 (438)
Q Consensus 213 gKRiwLGTFdTaEEAArAYDrAAi 236 (438)
--||.+|-|.+.++|..+-++...
T Consensus 45 ~yRV~vGpf~s~~~A~~~~~~L~~ 68 (81)
T 1uta_A 45 WNRVVIGPVKGKENADSTLNRLKM 68 (81)
T ss_dssp SEEEEESSCBTTTHHHHHHHHHHH
T ss_pred EEEEEECCcCCHHHHHHHHHHHHH
Confidence 356889999999999988766554
No 8
>3ju0_A Phage integrase; four stranded beta-sheet, DNA binding protein; 1.60A {Pectobacterium atrosepticum}
Probab=26.09 E-value=99 Score=25.75 Aligned_cols=44 Identities=23% Similarity=0.286 Sum_probs=28.6
Q ss_pred eEECCCC--cEEEEEeecCCCeEEeeCCCC--CHHHHHHHHHHHHHHh
Q 039976 195 VRQRHWG--KWVAEIRLPRNRTRLWLGTFD--RAEDAALAYDREAFKL 238 (438)
Q Consensus 195 VR~R~~G--KW~AeIr~p~~gKRiwLGTFd--TaEEAArAYDrAAikl 238 (438)
|+-.+.| .|.-+.+...+.+++-||.|. |..+|....+++...+
T Consensus 28 L~V~psG~K~w~~rYr~~GK~~~~~LG~yp~~SLa~AR~~a~~~r~~l 75 (108)
T 3ju0_A 28 LLVHPNGSKYWRLSYRFEKKQRLLALGVYPAVSLADARQRRDEAKKLL 75 (108)
T ss_dssp EEECTTSCEEEEEEEEETTEEEEEEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCEEEEEEEEEcCceEEEecCCCCCCCHHHHHHHHHHHHHHH
Confidence 3445544 488887763334668899997 5777777666655554
No 9
>1b69_A Protein (integrase); integrase, DNA binding, transposition, complex, beta-sheet recognition; HET: DNA; NMR {Enterococcus faecalis} SCOP: d.10.1.1 PDB: 1tn9_A* 1bb8_A 2bb8_A
Probab=26.05 E-value=78 Score=25.21 Aligned_cols=27 Identities=19% Similarity=0.095 Sum_probs=21.1
Q ss_pred CCceeeeEECCCCcEEEEEeecCCCeEE
Q 039976 189 TKLYRGVRQRHWGKWVAEIRLPRNRTRL 216 (438)
Q Consensus 189 sS~YRGVR~R~~GKW~AeIr~p~~gKRi 216 (438)
.-.+.|+++|..|+|+.++.+. .|++.
T Consensus 9 r~L~~GesqR~dG~Y~yry~d~-~Gkr~ 35 (69)
T 1b69_A 9 RILKTGESQRKDGRYLYKYIDS-FGEPQ 35 (69)
T ss_dssp SCCCTTEEECSSSCEEEEEECT-TSSEE
T ss_pred CccCCCeEEccCCcEEEEEEcC-CCCEE
Confidence 3568899999999999999983 35544
No 10
>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_I
Probab=23.69 E-value=1e+02 Score=26.39 Aligned_cols=35 Identities=23% Similarity=0.229 Sum_probs=29.3
Q ss_pred EEEEEeecCCCeEEeeCCCCCHHHHHHHHHHHHHHhh
Q 039976 203 WVAEIRLPRNRTRLWLGTFDRAEDAALAYDREAFKLR 239 (438)
Q Consensus 203 W~AeIr~p~~gKRiwLGTFdTaEEAArAYDrAAiklr 239 (438)
|+|.|.. +..-+-++...+++.|..|..+|+.||=
T Consensus 80 wva~Vk~--G~ilfEi~g~~~~~~a~eAlr~a~~KlP 114 (118)
T 2ftc_I 80 YVTPVKA--GRLVVEMGGRCEFEEVQGFLDQVAHKLP 114 (118)
T ss_pred EEEEECC--CCEEEEEeccCCHHHHHHHHHHHHhhCC
Confidence 9999994 6666667777889999999999999874
Done!