BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 039980
         (165 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2I0O|A Chain A, Crystal Structure Of Anopheles Gambiae SerTHR PHOSPHATASE
           COMPLEXED With Zn2+
          Length = 304

 Score = 27.3 bits (59), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 13/85 (15%)

Query: 61  SLLQWPIST--TASLRNRTIECQFAQLKGRRKYQEDRITCDLDMNMPSLGKNDLKEVRLG 118
           + L  P++T  ++   N  +    + ++G R  QED   C L+ +            +  
Sbjct: 4   AYLSEPLTTKDSSDESNEFLASGSSSMQGWRISQEDAHNCILNFDD-----------QCS 52

Query: 119 IAAVFDGHGGSEASEMASHLLLNYF 143
             AV+DGHGG+E ++  S  L  + 
Sbjct: 53  FFAVYDGHGGAEVAQYCSLHLPTFL 77


>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
           Protein
          Length = 359

 Score = 26.9 bits (58), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 2/47 (4%)

Query: 94  DRITCDLDMNMPSLGKNDLKEVR--LGIAAVFDGHGGSEASEMASHL 138
           D    +LD N+  + + ++K ++  LGI +V+  H  +EA  MAS +
Sbjct: 158 DEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRI 204


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.135    0.398 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,696,201
Number of Sequences: 62578
Number of extensions: 173053
Number of successful extensions: 311
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 311
Number of HSP's gapped (non-prelim): 4
length of query: 165
length of database: 14,973,337
effective HSP length: 91
effective length of query: 74
effective length of database: 9,278,739
effective search space: 686626686
effective search space used: 686626686
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)