BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039981
(313 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1PA2|A Chain A, Arabidopsis Thaliana Peroxidase A2
pdb|1QO4|A Chain A, Arabidopsis Thaliana Peroxidase A2 At Room Temperature
Length = 306
Score = 398 bits (1022), Expect = e-111, Method: Compositional matrix adjust.
Identities = 197/306 (64%), Positives = 239/306 (78%), Gaps = 5/306 (1%)
Query: 8 QLSSTFYATTCPNVSSIVRGVVEQARNNDARIGARLIRVHFHDCFVNGCDGSLLLDDSAP 67
QL++TFY+ TCPN S+IVR ++QA +D RIGA LIR+HFHDCFVNGCD S+LLDD+
Sbjct: 2 QLNATFYSGTCPNASAIVRSTIQQALQSDTRIGASLIRLHFHDCFVNGCDASILLDDT-- 59
Query: 68 GGIQSEKNGNPNLSTG-GYEVVDDIKTALENVCPGVVSCADILAIASQILVSLDGGPTWQ 126
G IQSEKN PN+++ G+ VVD+IKTALEN CPGVVSC+D+LA+AS+ VSL GGP+W
Sbjct: 60 GSIQSEKNAGPNVNSARGFNVVDNIKTALENACPGVVSCSDVLALASEASVSLAGGPSWT 119
Query: 127 VQLGRRDSRTANLAGT-SGIPLGNETLDRISEKFRAVGLDDPTDLVALSGAHTFGRARCV 185
V LGRRDS TANLAG S IP E+L I+ KF AVGL+ DLVALSGAHTFGRARC
Sbjct: 120 VLLGRRDSLTANLAGANSSIPSPIESLSNITFKFSAVGLNT-NDLVALSGAHTFGRARCG 178
Query: 186 AFRNRLFNFDGAGNPDPTIDPTYLQTLRQNCPQGGNGNALVDLDPTTADGFDNNYFTNLQ 245
F NRLFNF G GNPDPT++ T L TL+Q CPQ G+ + + +LD +T D FDNNYF NLQ
Sbjct: 179 VFNNRLFNFSGTGNPDPTLNSTLLSTLQQLCPQNGSASTITNLDLSTPDAFDNNYFANLQ 238
Query: 246 NNRGLLTSDQVLFSTTGAKTVAIVNRFANSQTDFFDTFGQAMIKMGNIRPLTGNNGEIRS 305
+N GLL SDQ LFSTTG+ T+AIV FA++QT FF F Q+MI MGNI PLTG+NGEIR
Sbjct: 239 SNDGLLQSDQELFSTTGSSTIAIVTSFASNQTLFFQAFAQSMINMGNISPLTGSNGEIRL 298
Query: 306 NCRRIN 311
+C+++N
Sbjct: 299 DCKKVN 304
>pdb|4A5G|A Chain A, Raphanus Sativus Anionic Peroxidase.
pdb|4A5G|B Chain B, Raphanus Sativus Anionic Peroxidase
Length = 308
Score = 366 bits (940), Expect = e-102, Method: Compositional matrix adjust.
Identities = 192/305 (62%), Positives = 232/305 (76%), Gaps = 5/305 (1%)
Query: 9 LSSTFYATTCPNVSSIVRGVVEQARNNDARIGARLIRVHFHDCFVNGCDGSLLLDDSAPG 68
L++TFYA TCPN S++VR +V+QA +D+RIGA LIR+HFHDCFV GCD S+LLD+S G
Sbjct: 4 LNATFYAGTCPNASAMVRTIVQQAFQSDSRIGASLIRLHFHDCFVLGCDASILLDNS--G 61
Query: 69 GIQSEKNGNPNLSTG-GYEVVDDIKTALENVCPGVVSCADILAIASQILVSLDGGPTWQV 127
I SEKN PN ++ G+ VVD+IKTALEN CPGVVSC D+LA+ASQ VSL GGP+W V
Sbjct: 62 SIISEKNAGPNANSARGFNVVDNIKTALENACPGVVSCTDVLALASQASVSLSGGPSWTV 121
Query: 128 QLGRRDSRTANLAGT-SGIPLGNETLDRISEKFRAVGLDDPTDLVALSGAHTFGRARCVA 186
LGRRD+ TAN AG S IP + L I+ KF AVGL+ DLVALSGAHTFGRA C
Sbjct: 122 DLGRRDTLTANQAGANSSIPSPTQGLSNITSKFSAVGLNT-NDLVALSGAHTFGRATCGV 180
Query: 187 FRNRLFNFDGAGNPDPTIDPTYLQTLRQNCPQGGNGNALVDLDPTTADGFDNNYFTNLQN 246
F NRLFNF G GNPDPT++ T L TL++ CPQ G G+ +LD +T D FDNNYFTNLQ+
Sbjct: 181 FSNRLFNFSGKGNPDPTLNTTLLSTLQELCPQKGRGSGSTNLDLSTPDAFDNNYFTNLQS 240
Query: 247 NRGLLTSDQVLFSTTGAKTVAIVNRFANSQTDFFDTFGQAMIKMGNIRPLTGNNGEIRSN 306
N GLL SDQ LFSTTG+ T+AIV FA++QT FF F Q+MI MGNI PLTG++GEIR +
Sbjct: 241 NNGLLQSDQELFSTTGSATIAIVTSFASNQTLFFQAFAQSMINMGNISPLTGSSGEIRLD 300
Query: 307 CRRIN 311
C++ N
Sbjct: 301 CKKTN 305
>pdb|1GX2|A Chain A, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
pdb|1GX2|B Chain B, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
Length = 309
Score = 310 bits (793), Expect = 9e-85, Method: Compositional matrix adjust.
Identities = 158/308 (51%), Positives = 208/308 (67%), Gaps = 3/308 (0%)
Query: 8 QLSSTFYATTCPNVSSIVRGVVEQARNNDARIGARLIRVHFHDCFVNGCDGSLLLDDSAP 67
QL+ TFY +CPNVS+IVR + +D RI A ++R+HFHDCFVNGCD S+LLD++
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 68 GGIQSEKNGNPNLSTGGYEVVDDIKTALENVCPGVVSCADILAIASQILVSLDGGPTWQV 127
+ + GN N S G+ V+D +K A+E+ CP VSCAD+L IA+Q V+L GGP+W+V
Sbjct: 62 FRTEKDAFGNAN-SARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 120
Query: 128 QLGRRDSRTANL-AGTSGIPLGNETLDRISEKFRAVGLDDPTDLVALSGAHTFGRARCVA 186
LGRRDS A L + +P TL ++ + FR VGL+ +DLVALSG HTFG+ +C +
Sbjct: 121 PLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRS 180
Query: 187 FRNRLFNFDGAGNPDPTIDPTYLQTLRQNCPQGGNGNALVDLDPTTADGFDNNYFTNLQN 246
+RL+NF G PDPT++ TYLQTLR CP GN +ALVD D T FDN Y+ NL+
Sbjct: 181 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEE 240
Query: 247 NRGLLTSDQVLFSTTGAK-TVAIVNRFANSQTDFFDTFGQAMIKMGNIRPLTGNNGEIRS 305
+GL+ SDQ LFS+ A T+ +V FANS FF+ F +AM +MGNI PLTG G+IR
Sbjct: 241 QKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRL 300
Query: 306 NCRRINSN 313
NCR +NSN
Sbjct: 301 NCRVVNSN 308
>pdb|3ATJ|A Chain A, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|3ATJ|B Chain B, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|1GWT|A Chain A, Recombinant Horseradish Peroxidase C1a Phe221met
Length = 309
Score = 309 bits (791), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 158/308 (51%), Positives = 208/308 (67%), Gaps = 3/308 (0%)
Query: 8 QLSSTFYATTCPNVSSIVRGVVEQARNNDARIGARLIRVHFHDCFVNGCDGSLLLDDSAP 67
QL+ TFY +CPNVS+IVR + +D RI A ++R+HFHDCFVNGCD S+LLD++
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 68 GGIQSEKNGNPNLSTGGYEVVDDIKTALENVCPGVVSCADILAIASQILVSLDGGPTWQV 127
+ + GN N S G+ V+D +K A+E+ CP VSCAD+L IA+Q V+L GGP+W+V
Sbjct: 62 FRTEKDAFGNAN-SARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 120
Query: 128 QLGRRDSRTANL-AGTSGIPLGNETLDRISEKFRAVGLDDPTDLVALSGAHTFGRARCVA 186
LGRRDS A L + +P TL ++ + FR VGL+ +DLVALSG HTFG+ +C
Sbjct: 121 PLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRF 180
Query: 187 FRNRLFNFDGAGNPDPTIDPTYLQTLRQNCPQGGNGNALVDLDPTTADGFDNNYFTNLQN 246
+RL+NF G PDPT++ TYLQTLR CP GN +ALVD+D T FDN Y+ NL+
Sbjct: 181 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDMDLRTPTIFDNKYYVNLEE 240
Query: 247 NRGLLTSDQVLFSTTGAK-TVAIVNRFANSQTDFFDTFGQAMIKMGNIRPLTGNNGEIRS 305
+GL+ SDQ LFS+ A T+ +V FANS FF+ F +AM +MGNI PLTG G+IR
Sbjct: 241 QKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRL 300
Query: 306 NCRRINSN 313
NCR +NSN
Sbjct: 301 NCRVVNSN 308
>pdb|1W4W|A Chain A, Ferric Horseradish Peroxidase C1a In Complex With Formate
pdb|1W4Y|A Chain A, Ferrous Horseradish Peroxidase C1a In Complex With Carbon
Monoxide
Length = 323
Score = 308 bits (790), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 158/308 (51%), Positives = 207/308 (67%), Gaps = 3/308 (0%)
Query: 8 QLSSTFYATTCPNVSSIVRGVVEQARNNDARIGARLIRVHFHDCFVNGCDGSLLLDDSAP 67
QL+ TFY +CPNVS+IVR + +D RI A ++R+HFHDCFVNGCD S+LLD++
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 68 GGIQSEKNGNPNLSTGGYEVVDDIKTALENVCPGVVSCADILAIASQILVSLDGGPTWQV 127
+ + GN N S G+ V+D +K A+E+ CP VSCAD+L IA+Q V+L GGP+W+V
Sbjct: 61 FRTEKDAFGNAN-SARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 119
Query: 128 QLGRRDSRTANL-AGTSGIPLGNETLDRISEKFRAVGLDDPTDLVALSGAHTFGRARCVA 186
LGRRDS A L + +P TL ++ + FR VGL+ +DLVALSG HTFG+ +C
Sbjct: 120 PLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRF 179
Query: 187 FRNRLFNFDGAGNPDPTIDPTYLQTLRQNCPQGGNGNALVDLDPTTADGFDNNYFTNLQN 246
+RL+NF G PDPT++ TYLQTLR CP GN +ALVD D T FDN Y+ NL+
Sbjct: 180 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEE 239
Query: 247 NRGLLTSDQVLFSTTGAK-TVAIVNRFANSQTDFFDTFGQAMIKMGNIRPLTGNNGEIRS 305
+GL+ SDQ LFS+ A T+ +V FANS FF+ F +AM +MGNI PLTG G+IR
Sbjct: 240 QKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRL 299
Query: 306 NCRRINSN 313
NCR +NSN
Sbjct: 300 NCRVVNSN 307
>pdb|2ATJ|A Chain A, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
pdb|2ATJ|B Chain B, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
Length = 308
Score = 308 bits (789), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 158/308 (51%), Positives = 207/308 (67%), Gaps = 3/308 (0%)
Query: 8 QLSSTFYATTCPNVSSIVRGVVEQARNNDARIGARLIRVHFHDCFVNGCDGSLLLDDSAP 67
QL+ TFY +CPNVS+IVR + +D RI A ++R+HFHDCFVNGCD S+LLD++
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 68 GGIQSEKNGNPNLSTGGYEVVDDIKTALENVCPGVVSCADILAIASQILVSLDGGPTWQV 127
+ + GN N S G+ V+D +K A+E+ CP VSCAD+L IA+Q V+L GGP+W+V
Sbjct: 62 FRTEKDAFGNAN-SARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 120
Query: 128 QLGRRDSRTANL-AGTSGIPLGNETLDRISEKFRAVGLDDPTDLVALSGAHTFGRARCVA 186
LGRRDS A L + +P TL ++ + FR VGL+ +DLVALSG HTFG+ +C
Sbjct: 121 PLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRF 180
Query: 187 FRNRLFNFDGAGNPDPTIDPTYLQTLRQNCPQGGNGNALVDLDPTTADGFDNNYFTNLQN 246
+RL+NF G PDPT++ TYLQTLR CP GN +ALVD D T FDN Y+ NL+
Sbjct: 181 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEE 240
Query: 247 NRGLLTSDQVLFSTTGAK-TVAIVNRFANSQTDFFDTFGQAMIKMGNIRPLTGNNGEIRS 305
+GL+ SDQ LFS+ A T+ +V FANS FF+ F +AM +MGNI PLTG G+IR
Sbjct: 241 QKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRL 300
Query: 306 NCRRINSN 313
NCR +NSN
Sbjct: 301 NCRVVNSN 308
>pdb|6ATJ|A Chain A, Recombinant Horseradish Peroxidase C Complex With Ferulic
Acid
pdb|7ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a Complex With
Cyanide And Ferulic Acid
pdb|1H5D|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-11% Dose)
pdb|1H5E|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (11-22% Dose)
pdb|1H5F|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (22-33% Dose)
pdb|1H5G|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (33-44% Dose)
pdb|1H5I|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (56-67% Dose)
pdb|1H5J|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (67-78% Dose)
pdb|1H5K|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (78-89% Dose)
pdb|1H5M|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-100% Dose)
pdb|1H55|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Ii
pdb|1H57|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Iii
pdb|1H58|A Chain A, Structure Of Ferrous Horseradish Peroxidase C1a
pdb|1H5A|A Chain A, Structure Of Ferric Horseradish Peroxidase C1a In Complex
With Acetate
pdb|1H5C|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (100-200% Dose)
pdb|1H5H|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (44-56% Dose)
pdb|1H5L|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (89-100% Dose)
Length = 308
Score = 308 bits (789), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 158/308 (51%), Positives = 207/308 (67%), Gaps = 3/308 (0%)
Query: 8 QLSSTFYATTCPNVSSIVRGVVEQARNNDARIGARLIRVHFHDCFVNGCDGSLLLDDSAP 67
QL+ TFY +CPNVS+IVR + +D RI A ++R+HFHDCFVNGCD S+LLD++
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 68 GGIQSEKNGNPNLSTGGYEVVDDIKTALENVCPGVVSCADILAIASQILVSLDGGPTWQV 127
+ + GN N S G+ V+D +K A+E+ CP VSCAD+L IA+Q V+L GGP+W+V
Sbjct: 61 FRTEKDAFGNAN-SARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 119
Query: 128 QLGRRDSRTANL-AGTSGIPLGNETLDRISEKFRAVGLDDPTDLVALSGAHTFGRARCVA 186
LGRRDS A L + +P TL ++ + FR VGL+ +DLVALSG HTFG+ +C
Sbjct: 120 PLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRF 179
Query: 187 FRNRLFNFDGAGNPDPTIDPTYLQTLRQNCPQGGNGNALVDLDPTTADGFDNNYFTNLQN 246
+RL+NF G PDPT++ TYLQTLR CP GN +ALVD D T FDN Y+ NL+
Sbjct: 180 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEE 239
Query: 247 NRGLLTSDQVLFSTTGAK-TVAIVNRFANSQTDFFDTFGQAMIKMGNIRPLTGNNGEIRS 305
+GL+ SDQ LFS+ A T+ +V FANS FF+ F +AM +MGNI PLTG G+IR
Sbjct: 240 QKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRL 299
Query: 306 NCRRINSN 313
NCR +NSN
Sbjct: 300 NCRVVNSN 307
>pdb|1GWO|A Chain A, Recombinant Horseradish Peroxidase C1a Ala170gln
Length = 309
Score = 308 bits (789), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 158/308 (51%), Positives = 207/308 (67%), Gaps = 3/308 (0%)
Query: 8 QLSSTFYATTCPNVSSIVRGVVEQARNNDARIGARLIRVHFHDCFVNGCDGSLLLDDSAP 67
QL+ TFY +CPNVS+IVR + +D RI A ++R+HFHDCFVNGCD S+LLD++
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 68 GGIQSEKNGNPNLSTGGYEVVDDIKTALENVCPGVVSCADILAIASQILVSLDGGPTWQV 127
+ + GN N S G+ V+D +K A+E+ CP VSCAD+L IA+Q V+L GGP+W+V
Sbjct: 62 FRTEKDAFGNAN-SARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 120
Query: 128 QLGRRDSRTANL-AGTSGIPLGNETLDRISEKFRAVGLDDPTDLVALSGAHTFGRARCVA 186
LGRRDS A L + +P TL ++ + FR VGL+ +DLVALSG HTFG+ +C
Sbjct: 121 PLGRRDSLQAFLDLANANLPQPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRF 180
Query: 187 FRNRLFNFDGAGNPDPTIDPTYLQTLRQNCPQGGNGNALVDLDPTTADGFDNNYFTNLQN 246
+RL+NF G PDPT++ TYLQTLR CP GN +ALVD D T FDN Y+ NL+
Sbjct: 181 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEE 240
Query: 247 NRGLLTSDQVLFSTTGAK-TVAIVNRFANSQTDFFDTFGQAMIKMGNIRPLTGNNGEIRS 305
+GL+ SDQ LFS+ A T+ +V FANS FF+ F +AM +MGNI PLTG G+IR
Sbjct: 241 QKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRL 300
Query: 306 NCRRINSN 313
NCR +NSN
Sbjct: 301 NCRVVNSN 308
>pdb|1QGJ|A Chain A, Arabidopsis Thaliana Peroxidase N
pdb|1QGJ|B Chain B, Arabidopsis Thaliana Peroxidase N
Length = 300
Score = 308 bits (788), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 165/307 (53%), Positives = 204/307 (66%), Gaps = 11/307 (3%)
Query: 8 QLSSTFYATTCPNVSSIVRGVVEQARNNDARIGARLIRVHFHDCFVNGCDGSLLLDDSAP 67
QLS YA +CPN+ IVR V A + R+ A LIR+HFHDCFVNGCD SLLLD
Sbjct: 1 QLSPDIYAKSCPNLVQIVRKQVAIALKAEIRMAASLIRLHFHDCFVNGCDASLLLD---- 56
Query: 68 GGIQSEKNGNPNLSTG-GYEVVDDIKTALENVCPGVVSCADILAIASQILVSLDGGPTWQ 126
G SEK PN+++ G+EV+D IK A+EN CPGVVSCADIL +A++ V L GGP W+
Sbjct: 57 -GADSEKLAIPNINSARGFEVIDTIKAAVENACPGVVSCADILTLAARDSVVLSGGPGWR 115
Query: 127 VQLGRRDSRTANLAGTSGIPLGNETLDRISEKFRAVGLDDPTDLVALSGAHTFGRARCVA 186
V LGR+D AN + +P E LD I KF AV L+ TD+VALSGAHTFG+A+C
Sbjct: 116 VALGRKDGLVANQNSANNLPSPFEPLDAIIAKFVAVNLN-ITDVVALSGAHTFGQAKCAV 174
Query: 187 FRNRLFNFDGAGNPDPTIDPTYLQTLRQNCPQGGNGNALVDLDPTTADGFDNNYFTNLQN 246
F NRLFNF GAGNPD T++ + L L+ CP GGN N LD +T D FDNNYF NL
Sbjct: 175 FSNRLFNFTGAGNPDATLETSLLSNLQTVCPLGGNSNITAPLDRSTTDTFDNNYFKNLLE 234
Query: 247 NRGLLTSDQVLFSTTGA--KTVAIVNRFANSQTDFFDTFGQAMIKMGNIRPLTGNNGEIR 304
+GLL+SDQ+LFS+ A T +V ++ SQ+ FF F AMI+MGNI G +GE+R
Sbjct: 235 GKGLLSSDQILFSSDLAVNTTKKLVEAYSRSQSLFFRDFTCAMIRMGNIS--NGASGEVR 292
Query: 305 SNCRRIN 311
+NCR IN
Sbjct: 293 TNCRVIN 299
>pdb|1GWU|A Chain A, Recombinant Horseradish Peroxidase C1a Ala140gly
Length = 309
Score = 307 bits (786), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 158/308 (51%), Positives = 207/308 (67%), Gaps = 3/308 (0%)
Query: 8 QLSSTFYATTCPNVSSIVRGVVEQARNNDARIGARLIRVHFHDCFVNGCDGSLLLDDSAP 67
QL+ TFY +CPNVS+IVR + +D RI A ++R+HFHDCFVNGCD S+LLD++
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 68 GGIQSEKNGNPNLSTGGYEVVDDIKTALENVCPGVVSCADILAIASQILVSLDGGPTWQV 127
+ + GN N S G+ V+D +K A+E+ CP VSCAD+L IA+Q V+L GGP+W+V
Sbjct: 62 FRTEKDAFGNAN-SARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 120
Query: 128 QLGRRDSRTANL-AGTSGIPLGNETLDRISEKFRAVGLDDPTDLVALSGAHTFGRARCVA 186
LGRRDS A L + +P TL ++ + FR VGL+ +DLVALSG HTFG+ +C
Sbjct: 121 PLGRRDSLQAFLDLANANLPGPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRF 180
Query: 187 FRNRLFNFDGAGNPDPTIDPTYLQTLRQNCPQGGNGNALVDLDPTTADGFDNNYFTNLQN 246
+RL+NF G PDPT++ TYLQTLR CP GN +ALVD D T FDN Y+ NL+
Sbjct: 181 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEE 240
Query: 247 NRGLLTSDQVLFSTTGAK-TVAIVNRFANSQTDFFDTFGQAMIKMGNIRPLTGNNGEIRS 305
+GL+ SDQ LFS+ A T+ +V FANS FF+ F +AM +MGNI PLTG G+IR
Sbjct: 241 QKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRL 300
Query: 306 NCRRINSN 313
NCR +NSN
Sbjct: 301 NCRVVNSN 308
>pdb|1GW2|A Chain A, Recombinant Horseradish Peroxidase C1a Thr171ser In
Complex With Ferulic Acid
Length = 308
Score = 306 bits (785), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 157/308 (50%), Positives = 207/308 (67%), Gaps = 3/308 (0%)
Query: 8 QLSSTFYATTCPNVSSIVRGVVEQARNNDARIGARLIRVHFHDCFVNGCDGSLLLDDSAP 67
QL+ TFY +CPNVS+IVR + +D RI A ++R+HFHDCFVNGCD S+LLD++
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 68 GGIQSEKNGNPNLSTGGYEVVDDIKTALENVCPGVVSCADILAIASQILVSLDGGPTWQV 127
+ + GN N S G+ V+D +K A+E+ CP VSCAD+L IA+Q V+L GGP+W+V
Sbjct: 61 FRTEKDAFGNAN-SARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 119
Query: 128 QLGRRDSRTANL-AGTSGIPLGNETLDRISEKFRAVGLDDPTDLVALSGAHTFGRARCVA 186
LGRRDS A L + +P TL ++ + FR VGL+ +DLVALSG H+FG+ +C
Sbjct: 120 PLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHSFGKNQCRF 179
Query: 187 FRNRLFNFDGAGNPDPTIDPTYLQTLRQNCPQGGNGNALVDLDPTTADGFDNNYFTNLQN 246
+RL+NF G PDPT++ TYLQTLR CP GN +ALVD D T FDN Y+ NL+
Sbjct: 180 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEE 239
Query: 247 NRGLLTSDQVLFSTTGAK-TVAIVNRFANSQTDFFDTFGQAMIKMGNIRPLTGNNGEIRS 305
+GL+ SDQ LFS+ A T+ +V FANS FF+ F +AM +MGNI PLTG G+IR
Sbjct: 240 QKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRL 299
Query: 306 NCRRINSN 313
NCR +NSN
Sbjct: 300 NCRVVNSN 307
>pdb|1ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|B Chain B, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|C Chain C, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|D Chain D, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|E Chain E, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|F Chain F, Recombinant Horseradish Peroxidase C1a
pdb|1HCH|A Chain A, Structure Of Horseradish Peroxidase C1a Compound I
Length = 306
Score = 306 bits (784), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 157/307 (51%), Positives = 206/307 (67%), Gaps = 3/307 (0%)
Query: 8 QLSSTFYATTCPNVSSIVRGVVEQARNNDARIGARLIRVHFHDCFVNGCDGSLLLDDSAP 67
QL+ TFY +CPNVS+IVR + +D RI A ++R+HFHDCFVNGCD S+LLD++
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 68 GGIQSEKNGNPNLSTGGYEVVDDIKTALENVCPGVVSCADILAIASQILVSLDGGPTWQV 127
+ + GN N S G+ V+D +K A+E+ CP VSCAD+L IA+Q V+L GGP+W+V
Sbjct: 61 FRTEKDAFGNAN-SARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 119
Query: 128 QLGRRDSRTANL-AGTSGIPLGNETLDRISEKFRAVGLDDPTDLVALSGAHTFGRARCVA 186
LGRRDS A L + +P TL ++ + FR VGL+ +DLVALSG HTFG+ +C
Sbjct: 120 PLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRF 179
Query: 187 FRNRLFNFDGAGNPDPTIDPTYLQTLRQNCPQGGNGNALVDLDPTTADGFDNNYFTNLQN 246
+RL+NF G PDPT++ TYLQTLR CP GN +ALVD D T FDN Y+ NL+
Sbjct: 180 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEE 239
Query: 247 NRGLLTSDQVLFSTTGAK-TVAIVNRFANSQTDFFDTFGQAMIKMGNIRPLTGNNGEIRS 305
+GL+ SDQ LFS+ A T+ +V FANS FF+ F +AM +MGNI PLTG G+IR
Sbjct: 240 QKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRL 299
Query: 306 NCRRINS 312
NCR +NS
Sbjct: 300 NCRVVNS 306
>pdb|4ATJ|A Chain A, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
pdb|4ATJ|B Chain B, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
Length = 309
Score = 305 bits (781), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 157/308 (50%), Positives = 206/308 (66%), Gaps = 3/308 (0%)
Query: 8 QLSSTFYATTCPNVSSIVRGVVEQARNNDARIGARLIRVHFHDCFVNGCDGSLLLDDSAP 67
QL+ TFY +CPNVS+IVR + +D RI A ++R+HF DCFVNGCD S+LLD++
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFEDCFVNGCDASILLDNTTS 61
Query: 68 GGIQSEKNGNPNLSTGGYEVVDDIKTALENVCPGVVSCADILAIASQILVSLDGGPTWQV 127
+ + GN N S G+ V+D +K A+E+ CP VSCAD+L IA+Q V+L GGP+W+V
Sbjct: 62 FRTEKDAFGNAN-SARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 120
Query: 128 QLGRRDSRTANL-AGTSGIPLGNETLDRISEKFRAVGLDDPTDLVALSGAHTFGRARCVA 186
LGRRDS A L + +P TL ++ + FR VGL+ +DLVALSG HTFG+ +C
Sbjct: 121 PLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRF 180
Query: 187 FRNRLFNFDGAGNPDPTIDPTYLQTLRQNCPQGGNGNALVDLDPTTADGFDNNYFTNLQN 246
+RL+NF G PDPT++ TYLQTLR CP GN +ALVD D T FDN Y+ NL+
Sbjct: 181 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEE 240
Query: 247 NRGLLTSDQVLFSTTGAK-TVAIVNRFANSQTDFFDTFGQAMIKMGNIRPLTGNNGEIRS 305
+GL+ SDQ LFS+ A T+ +V FANS FF+ F +AM +MGNI PLTG G+IR
Sbjct: 241 QKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRL 300
Query: 306 NCRRINSN 313
NCR +NSN
Sbjct: 301 NCRVVNSN 308
>pdb|2YLJ|A Chain A, Horse Radish Peroxidase, Mutant S167y
Length = 306
Score = 304 bits (779), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 156/307 (50%), Positives = 205/307 (66%), Gaps = 3/307 (0%)
Query: 8 QLSSTFYATTCPNVSSIVRGVVEQARNNDARIGARLIRVHFHDCFVNGCDGSLLLDDSAP 67
QL+ TFY +CPNVS+IVR + +D RI A ++R+HFHDCFVNGCD S+LLD++
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 68 GGIQSEKNGNPNLSTGGYEVVDDIKTALENVCPGVVSCADILAIASQILVSLDGGPTWQV 127
+ + GN N S G+ V+D +K A+E+ CP VSCAD+L IA+Q V+L GGP+W+V
Sbjct: 61 FRTEKDAFGNAN-SARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 119
Query: 128 QLGRRDSRTANL-AGTSGIPLGNETLDRISEKFRAVGLDDPTDLVALSGAHTFGRARCVA 186
LGRRDS A L + +P TL ++ + FR VGL+ +DLVAL G HTFG+ +C
Sbjct: 120 PLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALYGGHTFGKNQCRF 179
Query: 187 FRNRLFNFDGAGNPDPTIDPTYLQTLRQNCPQGGNGNALVDLDPTTADGFDNNYFTNLQN 246
+RL+NF G PDPT++ TYLQTLR CP GN +ALVD D T FDN Y+ NL+
Sbjct: 180 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEE 239
Query: 247 NRGLLTSDQVLFSTTGAK-TVAIVNRFANSQTDFFDTFGQAMIKMGNIRPLTGNNGEIRS 305
+GL+ SDQ LFS+ A T+ +V FANS FF+ F +AM +MGNI PLTG G+IR
Sbjct: 240 QKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRL 299
Query: 306 NCRRINS 312
NCR +NS
Sbjct: 300 NCRVVNS 306
>pdb|1KZM|A Chain A, Distal Heme Pocket Mutant (r38s/h42e) Of Recombinant
Horseradish Peroxidase C (hrp C)
Length = 308
Score = 302 bits (774), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 156/308 (50%), Positives = 205/308 (66%), Gaps = 3/308 (0%)
Query: 8 QLSSTFYATTCPNVSSIVRGVVEQARNNDARIGARLIRVHFHDCFVNGCDGSLLLDDSAP 67
QL+ TFY +CPNVS+IVR + +D RI A ++ +HF DCFVNGCD S+LLD++
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILSLHFEDCFVNGCDASILLDNTTS 60
Query: 68 GGIQSEKNGNPNLSTGGYEVVDDIKTALENVCPGVVSCADILAIASQILVSLDGGPTWQV 127
+ + GN N S G+ V+D +K A+E+ CP VSCAD+L IA+Q V+L GGP+W+V
Sbjct: 61 FRTEKDAFGNAN-SARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 119
Query: 128 QLGRRDSRTANL-AGTSGIPLGNETLDRISEKFRAVGLDDPTDLVALSGAHTFGRARCVA 186
LGRRDS A L + +P TL ++ + FR VGL+ +DLVALSG HTFG+ +C
Sbjct: 120 PLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRF 179
Query: 187 FRNRLFNFDGAGNPDPTIDPTYLQTLRQNCPQGGNGNALVDLDPTTADGFDNNYFTNLQN 246
+RL+NF G PDPT++ TYLQTLR CP GN +ALVD D T FDN Y+ NL+
Sbjct: 180 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEE 239
Query: 247 NRGLLTSDQVLFSTTGAK-TVAIVNRFANSQTDFFDTFGQAMIKMGNIRPLTGNNGEIRS 305
+GL+ SDQ LFS+ A T+ +V FANS FF+ F +AM +MGNI PLTG G+IR
Sbjct: 240 QKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRL 299
Query: 306 NCRRINSN 313
NCR +NSN
Sbjct: 300 NCRVVNSN 307
>pdb|1FHF|A Chain A, The Structure Of Soybean Peroxidase
pdb|1FHF|B Chain B, The Structure Of Soybean Peroxidase
pdb|1FHF|C Chain C, The Structure Of Soybean Peroxidase
Length = 304
Score = 300 bits (768), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 167/306 (54%), Positives = 205/306 (66%), Gaps = 5/306 (1%)
Query: 8 QLSSTFYATTCPNVSSIVRGVVEQARNNDARIGARLIRVHFHDCFVNGCDGSLLLDDSAP 67
QL+ TFY TCPN+ IV GV+ A D RIGA L+R+HFHDCFV GCDGS+LL+++
Sbjct: 1 QLTPTFYRETCPNLFPIVFGVIFDASFTDPRIGASLMRLHFHDCFVQGCDGSVLLNNT-- 58
Query: 68 GGIQSEKNGNPNL-STGGYEVVDDIKTALENVCPGVVSCADILAIASQILVSLDGGPTWQ 126
I+SE++ PN+ S G +VV+DIKTA+EN CP VSCADILAIA++I L GGP W
Sbjct: 59 DTIESEQDALPNINSIRGLDVVNDIKTAVENSCPDTVSCADILAIAAEIASVLGGGPGWP 118
Query: 127 VQLGRRDSRTAN-LAGTSGIPLGNETLDRISEKFRAVGLDDPTDLVALSGAHTFGRARCV 185
V LGRRDS TAN +P L ++ F GL+ DLV LSG HTFGRARC
Sbjct: 119 VPLGRRDSLTANRTLANQNLPAPFFNLTQLKASFAVQGLNT-LDLVTLSGGHTFGRARCS 177
Query: 186 AFRNRLFNFDGAGNPDPTIDPTYLQTLRQNCPQGGNGNALVDLDPTTADGFDNNYFTNLQ 245
F NRL+NF GNPDPT++ TYL+ LR CPQ G+ L +LD +T D FDN Y++NL
Sbjct: 178 TFINRLYNFSNTGNPDPTLNTTYLEVLRARCPQNATGDNLTNLDLSTPDQFDNRYYSNLL 237
Query: 246 NNRGLLTSDQVLFSTTGAKTVAIVNRFANSQTDFFDTFGQAMIKMGNIRPLTGNNGEIRS 305
GLL SDQ LFST GA T+ IVN F+++Q FF F +MIKMGNI LTG+ GEIR
Sbjct: 238 QLNGLLQSDQELFSTPGADTIPIVNSFSSNQNTFFSNFRVSMIKMGNIGVLTGDEGEIRL 297
Query: 306 NCRRIN 311
C +N
Sbjct: 298 QCNFVN 303
>pdb|1SCH|A Chain A, Peanut Peroxidase
pdb|1SCH|B Chain B, Peanut Peroxidase
Length = 294
Score = 276 bits (705), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 148/305 (48%), Positives = 194/305 (63%), Gaps = 14/305 (4%)
Query: 9 LSSTFYATTCPNVSSIVRGVVEQARNNDARIGARLIRVHFHDCFVNGCDGSLLLDDSAPG 68
LSS FYAT CPN S ++ V A +AR+GA L+R+HFHDCFV GCD S+LLDD++
Sbjct: 2 LSSNFYATKCPNALSTIKSAVNSAVAKEARMGASLLRLHFHDCFVQGCDASVLLDDTS-- 59
Query: 69 GIQSEKNGNPNL-STGGYEVVDDIKTALENVCPGVVSCADILAIASQILVSLDGGPTWQV 127
EK PN S G+EV+D IK+ +E++CPGVVSCADILA+A++ V GG +W V
Sbjct: 60 NFTGEKTAGPNANSIRGFEVIDTIKSQVESLCPGVVSCADILAVAARDSVVALGGASWNV 119
Query: 128 QLGRRDSRTANLAGT-SGIPLGNETLDRISEKFRAVGLDDPTDLVALSGAHTFGRARCVA 186
LGRRDS TA+L+ S +P L + F G +LV LSGAHT G+A+C A
Sbjct: 120 LLGRRDSTTASLSSANSDLPAPFFNLSGLISAFSNKGFTTK-ELVTLSGAHTIGQAQCTA 178
Query: 187 FRNRLFNFDGAGNPDPTIDPTYLQTLRQNCPQGGNGNALVDLDPTTADGFDNNYFTNLQN 246
FR R++N + IDPTY ++L+ NCP G L D TT + FDN Y+ NL+N
Sbjct: 179 FRTRIYN-------ESNIDPTYAKSLQANCPSVGGDTNLSPFDVTTPNKFDNAYYINLRN 231
Query: 247 NRGLLTSDQVLFSTTGAKTVAIVNRFANSQTDFFDTFGQAMIKMGNIRPLTGNNGEIRSN 306
+GLL SDQ LF+ G T + V ++N+ F FG AMIKMGN+ PLTG +G+IR+N
Sbjct: 232 KKGLLHSDQQLFN--GVSTDSQVTAYSNNAATFNTDFGNAMIKMGNLSPLTGTSGQIRTN 289
Query: 307 CRRIN 311
CR+ N
Sbjct: 290 CRKTN 294
>pdb|1BGP|A Chain A, Crystal Structure Of Barley Grain Peroxidase 1
Length = 309
Score = 235 bits (600), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 139/304 (45%), Positives = 177/304 (58%), Gaps = 16/304 (5%)
Query: 9 LSSTFYATTCPNVSSIVRGVVEQARNNDARIGARLIRVHFHDCFVNGCDGSLLLDDSAPG 68
LS FY TCP SIVR V++A D + A L+R+HFHDCFV GCD S+LLD SA G
Sbjct: 9 LSFDFYWQTCPRAESIVREFVQEAVRKDIGLAAGLLRLHFHDCFVQGCDASVLLDGSATG 68
Query: 69 GIQSEKNGNPNLSTGGYEVVDDIKTALENVCPG-VVSCADILAIASQILVSLDGGPTWQV 127
+ + N L ++ V+DI+ LE C G VVSC+DILA+A++ V + GGP ++V
Sbjct: 69 PGEQQAPPNLTLRPSAFKAVNDIRDRLERECRGAVVSCSDILALAARDSVVVSGGPDYRV 128
Query: 128 QLGRRDSRTANLAGT----SGIPLGNETLDRISEKFRAVGLDDPTDLVALSGAHTFGRAR 183
LGRRDSR+ A T S +P G + + D TDLV +SG HT G A
Sbjct: 129 PLGRRDSRS--FASTQDVLSDLP-GPSSNVQSLLALLGRLGLDATDLVTISGGHTIGLAH 185
Query: 184 CVAFRNRLFNFDGAGNPDPTIDPTYLQTLRQNCPQGGNGNALVDLDPTTADGFDNNYFTN 243
C +F +RLF PDPTI PT+L L++ CP G V LD T + FDN Y+ +
Sbjct: 186 CSSFEDRLFP-----RPDPTISPTFLSRLKRTCPAKGTDRRTV-LDVRTPNVFDNKYYID 239
Query: 244 LQNNRGLLTSDQVLFSTTGAKTVAIVNRFANSQTDFFDTFGQAMIKMGNIRPLTGNNGEI 303
L N GL SDQ LF T A T IV RFA SQ DFF+ FG ++ KMG +R T + GE+
Sbjct: 240 LVNREGLFVSDQDLF--TNAITRPIVERFAQSQQDFFEQFGVSIGKMGQMRVRTSDQGEV 297
Query: 304 RSNC 307
R NC
Sbjct: 298 RRNC 301
>pdb|3HDL|A Chain A, Crystal Structure Of Highly Glycosylated Peroxidase From
Royal Palm Tree
Length = 304
Score = 210 bits (535), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 135/307 (43%), Positives = 172/307 (56%), Gaps = 15/307 (4%)
Query: 13 FYATTCPNVSSIVRGVVEQARNNDARIGARLIRVHFHDCFVNGCDGSLLLDDSAPGGIQS 72
FY T+CP S+V+ V A N++ I LIR+HFHDCFV GCD S+LLD +A +
Sbjct: 6 FYNTSCPTAESLVQQAVAAAFANNSGIAPGLIRMHFHDCFVRGCDASVLLDSTANN--TA 63
Query: 73 EKNGNP-NLSTGGYEVVDDIKTALENVCPGVVSCADILAIASQILVSLDGGPTWQVQLGR 131
EK+ P N S G+EV+ K+A+E CP VSCADILA A++ +L G T+QV GR
Sbjct: 64 EKDAIPNNPSLRGFEVITAAKSAVEAACPQTVSCADILAFAARDSANLAGNITYQVPSGR 123
Query: 132 RDSRTANLAGTSGI----PLGNETLDRISEKFRAVGLDDPTDLVALSGAHTFGRARCVAF 187
RD T +LA + PL N T S + + D ++V LSGAH+ G A C +F
Sbjct: 124 RDG-TVSLASEANAQIPSPLFNATQLINSFANKTLTAD---EMVTLSGAHSIGVAHCSSF 179
Query: 188 RNRLFNFDGAGNPDPTIDPTYLQTLRQNCPQGGN--GNALVDLDPTTADGFDNNYFTNLQ 245
NRL+NF+ DPT+ P+Y LR CP V LD T DN Y+T +Q
Sbjct: 180 TNRLYNFNSGSGIDPTLSPSYAALLRNTCPANSTRFTPITVSLDIITPSVLDNMYYTGVQ 239
Query: 246 NNRGLLTSDQVLFSTTGAKTVAIVNRFANSQTDFFDTFGQAMIKMGNIRPLTGNNGEIRS 305
GLLTSDQ L T A A V A + T + F QAM+KMG I LTG GEIR+
Sbjct: 240 LTLGLLTSDQAL--VTEANLSAAVKANAMNLTAWASKFAQAMVKMGQIEVLTGTQGEIRT 297
Query: 306 NCRRINS 312
NC +NS
Sbjct: 298 NCSVVNS 304
>pdb|4GED|A Chain A, Crystal Structure Of The Leishmania Major
Peroxidase-Cytochrome C Complex
Length = 268
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 75/160 (46%), Gaps = 10/160 (6%)
Query: 25 VRGVVEQARNNDARIGARLIRVHFHDCFVNGCDGSLLLDDSAPGGIQSEKNGNPNLSTGG 84
+R +E + +G LIR+ +H+ C D +P + P G
Sbjct: 11 LRADIEDMISEKLELGPSLIRLAWHEAASYDC----FKKDGSPNS--ASMRFKPECLYAG 64
Query: 85 YEVVDDIKTALENVCPGV--VSCADILAIASQILVSLDGGPTWQVQLGRRDSRTANLAGT 142
+ +D + ALE + +S AD+ +A+ + + GGPT GR D++ ++ G
Sbjct: 65 NKGLDIPRKALETLKKKYPQISYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVCGP 124
Query: 143 SG-IPLGNETLDRISEKFRAVGLDDPTDLVALSGAHTFGR 181
G +P G++T + E FR +G +D + VAL GAHT G
Sbjct: 125 DGRLPDGSKTQSHVREVFRRLGFND-QETVALIGAHTCGE 163
>pdb|3RIV|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
pdb|3RIV|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Length = 271
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 75/160 (46%), Gaps = 10/160 (6%)
Query: 25 VRGVVEQARNNDARIGARLIRVHFHDCFVNGCDGSLLLDDSAPGGIQSEKNGNPNLSTGG 84
+R +E + +G LIR+ +H+ C D +P + P G
Sbjct: 12 LRADIEDMISEKLELGPSLIRLAWHEAASYDC----FKKDGSPNS--ASMRFKPECLYAG 65
Query: 85 YEVVDDIKTALENVCPGV--VSCADILAIASQILVSLDGGPTWQVQLGRRDSRTANLAGT 142
+ +D + ALE + +S AD+ +A+ + + GGPT GR D++ ++ G
Sbjct: 66 NKGLDIPRKALETLKKKYPQISYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVCGP 125
Query: 143 SG-IPLGNETLDRISEKFRAVGLDDPTDLVALSGAHTFGR 181
G +P G++T + E FR +G +D + VAL GAHT G
Sbjct: 126 DGRLPDGSKTQSHVREVFRRLGFND-QETVALIGAHTCGE 164
>pdb|3RIW|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
pdb|3RIW|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
Length = 271
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 75/160 (46%), Gaps = 10/160 (6%)
Query: 25 VRGVVEQARNNDARIGARLIRVHFHDCFVNGCDGSLLLDDSAPGGIQSEKNGNPNLSTGG 84
+R +E + +G LIR+ +H+ C D +P + P G
Sbjct: 12 LRADIEDMISEKLELGPSLIRLAWHEAASYDC----FKKDGSPNS--ASMRFKPECLYAG 65
Query: 85 YEVVDDIKTALENVCPGV--VSCADILAIASQILVSLDGGPTWQVQLGRRDSRTANLAGT 142
+ +D + ALE + +S AD+ +A+ + + GGPT GR D++ ++ G
Sbjct: 66 NKGLDIPRKALETLKKKYPQISYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVCGP 125
Query: 143 SG-IPLGNETLDRISEKFRAVGLDDPTDLVALSGAHTFGR 181
G +P G++T + E FR +G +D + VAL GAHT G
Sbjct: 126 DGRLPDGSKTQSHVREVFRRLGFND-QETVALIGAHTCGE 164
>pdb|2CL4|X Chain X, Ascorbate Peroxidase R172a Mutant
Length = 261
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 70/290 (24%), Positives = 113/290 (38%), Gaps = 61/290 (21%)
Query: 17 TCPNVSSIVRGVVEQARNN------DARIGARLIRVHFHDC--FVNGCDGSLLLDDSAPG 68
+ P VS+ + VE+A+ + R ++R+ +H F G P
Sbjct: 15 SYPTVSADYQKAVEKAKKKLRGFIAEKRCAPLMLRLAWHSAGTFDKGTK------TGGPF 68
Query: 69 GIQSEKNGNPNLSTGGYEVVDDIKTALENVCPGVVSCADILAIASQILVSLDGGPTWQVQ 128
G + + G ++ + L+ P ++S AD +A + V + GGP
Sbjct: 69 GTIKHPAELAHSANNGLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFH 127
Query: 129 LGRRDSRTANLAGTSGIPLGNETLDRISEKF-RAVGLDDPTDLVALSGAHTFGRARCVAF 187
GR D G +P + D + + F +A+GL D D+VALSG HT G A A
Sbjct: 128 PGREDKPEPPPEGR--LPDATKGSDHLRDVFGKAMGLTD-QDIVALSGGHTIGAAHKEA- 183
Query: 188 RNRLFNFDGAGNPDPTIDPTYLQTLRQNCPQGGNGNALVDLDPTTADGFDNNYFTNLQN- 246
F+G +P I FDN+YFT L +
Sbjct: 184 ----SGFEGPWTSNPLI-------------------------------FDNSYFTELLSG 208
Query: 247 -NRGL--LTSDQVLFSTTGAKTVAIVNRFANSQTDFFDTFGQAMIKMGNI 293
GL L SD+ L S + +V+++A + FF + +A K+ +
Sbjct: 209 EKEGLLQLPSDKALLSDPVFRP--LVDKYAADEDAFFADYAEAHQKLSEL 256
>pdb|1OAF|A Chain A, Ascobate Peroxidase From Soybean Cytosol In Complex With
Ascorbate
pdb|1OAG|A Chain A, Ascorbate Peroxidase From Soybean Cytosol
pdb|1V0H|X Chain X, Ascobate Peroxidase From Soybean Cytosol In Complex With
Salicylhydroxamic Acid
pdb|2GHH|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHK|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
Length = 261
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 70/290 (24%), Positives = 114/290 (39%), Gaps = 61/290 (21%)
Query: 17 TCPNVSSIVRGVVEQARNN------DARIGARLIRVHFHDC--FVNGCDGSLLLDDSAPG 68
+ P VS+ + VE+A+ + R ++R+ +H F G P
Sbjct: 15 SYPTVSADYQKAVEKAKKKLRGFIAEKRCAPLMLRLAWHSAGTFDKGTK------TGGPF 68
Query: 69 GIQSEKNGNPNLSTGGYEVVDDIKTALENVCPGVVSCADILAIASQILVSLDGGPTWQVQ 128
G + + G ++ + L+ P ++S AD +A + V + GGP
Sbjct: 69 GTIKHPAELAHSANNGLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFH 127
Query: 129 LGRRDSRTANLAGTSGIPLGNETLDRISEKF-RAVGLDDPTDLVALSGAHTFGRARCVAF 187
GR D G +P + D + + F +A+GL D D+VALSG HT G A
Sbjct: 128 PGREDKPEPPPEGR--LPDATKGSDHLRDVFGKAMGLTD-QDIVALSGGHTIG----AAH 180
Query: 188 RNRLFNFDGAGNPDPTIDPTYLQTLRQNCPQGGNGNALVDLDPTTADGFDNNYFTNLQN- 246
+ R F+G +P I FDN+YFT L +
Sbjct: 181 KERS-GFEGPWTSNPLI-------------------------------FDNSYFTELLSG 208
Query: 247 -NRGL--LTSDQVLFSTTGAKTVAIVNRFANSQTDFFDTFGQAMIKMGNI 293
GL L SD+ L S + +V+++A + FF + +A K+ +
Sbjct: 209 EKEGLLQLPSDKALLSDPVFRP--LVDKYAADEDAFFADYAEAHQKLSEL 256
>pdb|2VCF|X Chain X, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase
Length = 264
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 70/290 (24%), Positives = 114/290 (39%), Gaps = 61/290 (21%)
Query: 17 TCPNVSSIVRGVVEQARNN------DARIGARLIRVHFHDC--FVNGCDGSLLLDDSAPG 68
+ P VS+ + VE+A+ + R ++R+ +H F G P
Sbjct: 15 SYPTVSADYQKAVEKAKKKLRGFIAEKRCAPLMLRLAWHSAGTFDKGTK------TGGPF 68
Query: 69 GIQSEKNGNPNLSTGGYEVVDDIKTALENVCPGVVSCADILAIASQILVSLDGGPTWQVQ 128
G + + G ++ + L+ P ++S AD +A + V + GGP
Sbjct: 69 GTIKHPAELAHSANNGLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFH 127
Query: 129 LGRRDSRTANLAGTSGIPLGNETLDRISEKF-RAVGLDDPTDLVALSGAHTFGRARCVAF 187
GR D G +P + D + + F +A+GL D D+VALSG HT G A
Sbjct: 128 PGREDKPEPPPEGR--LPDATKGSDHLRDVFGKAMGLTD-QDIVALSGGHTIG----AAH 180
Query: 188 RNRLFNFDGAGNPDPTIDPTYLQTLRQNCPQGGNGNALVDLDPTTADGFDNNYFTNLQN- 246
+ R F+G +P I FDN+YFT L +
Sbjct: 181 KERS-GFEGPWTSNPLI-------------------------------FDNSYFTELLSG 208
Query: 247 -NRGL--LTSDQVLFSTTGAKTVAIVNRFANSQTDFFDTFGQAMIKMGNI 293
GL L SD+ L S + +V+++A + FF + +A K+ +
Sbjct: 209 EKEGLLQLPSDKALLSDPVFRP--LVDKYAADEDAFFADYAEAHQKLSEL 256
>pdb|2XIF|A Chain A, The Structure Of Ascorbate Peroxidase Compound Ii
pdb|2XIH|A Chain A, The Structure Of Ascorbate Peroxidase Compound Iii
pdb|2XI6|A Chain A, The Structure Of Ascorbate Peroxidase Compound I
pdb|2XJ6|A Chain A, The Structure Of Ferrous Ascorbate Peroxidase
Length = 249
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 70/290 (24%), Positives = 114/290 (39%), Gaps = 61/290 (21%)
Query: 17 TCPNVSSIVRGVVEQARNN------DARIGARLIRVHFHDC--FVNGCDGSLLLDDSAPG 68
+ P VS+ + VE+A+ + R ++R+ +H F G P
Sbjct: 3 SYPTVSADYQKAVEKAKKKLRGFIAEKRCAPLMLRLAWHSAGTFDKGTK------TGGPF 56
Query: 69 GIQSEKNGNPNLSTGGYEVVDDIKTALENVCPGVVSCADILAIASQILVSLDGGPTWQVQ 128
G + + G ++ + L+ P ++S AD +A + V + GGP
Sbjct: 57 GTIKHPAELAHSANNGLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFH 115
Query: 129 LGRRDSRTANLAGTSGIPLGNETLDRISEKF-RAVGLDDPTDLVALSGAHTFGRARCVAF 187
GR D G +P + D + + F +A+GL D D+VALSG HT G A
Sbjct: 116 PGREDKPEPPPEGR--LPDATKGSDHLRDVFGKAMGLTD-QDIVALSGGHTIG----AAH 168
Query: 188 RNRLFNFDGAGNPDPTIDPTYLQTLRQNCPQGGNGNALVDLDPTTADGFDNNYFTNLQN- 246
+ R F+G +P I FDN+YFT L +
Sbjct: 169 KERS-GFEGPWTSNPLI-------------------------------FDNSYFTELLSG 196
Query: 247 -NRGL--LTSDQVLFSTTGAKTVAIVNRFANSQTDFFDTFGQAMIKMGNI 293
GL L SD+ L S + +V+++A + FF + +A K+ +
Sbjct: 197 EKEGLLQLPSDKALLSDPVFRP--LVDKYAADEDAFFADYAEAHQKLSEL 244
>pdb|1IYN|A Chain A, Crystal Structure Of Chloroplastic Ascorbate Peroxidase
From Tobacco Plants And Structural Insights For Its
Instability
Length = 295
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 82/198 (41%), Gaps = 30/198 (15%)
Query: 103 VSCADILAIASQILVSLDGGPTWQVQLGRRDSRTANLAGTSG-IPLGN--ETLDRISEKF 159
V+ AD+ +AS + GGP ++ GR D G +P + + F
Sbjct: 87 VTYADLFQLASATAIEEAGGPKIPMKYGRVDVTEPEQCPEEGRLPDAGPPSPAQHLRDVF 146
Query: 160 RAVGLDDPTDLVALSGAHTFGRARCVAFRNRLFNFDGAGNPDPTIDPTYLQTLRQNCPQG 219
+GL+D ++VALSGAHT GR+R + G G P+ ++ P
Sbjct: 147 YRMGLND-KEIVALSGAHTLGRSRP--------DRSGWGKPE--------TKYTKDGPGA 189
Query: 220 GNGNALVDLDPTTADGFDNNYFTNLQNNRG----LLTSDQVLFSTTGAKTVAIVNRFANS 275
G + FDN+YF +++ R +L +D LF K A ++A
Sbjct: 190 PGGQSWT----AQWLKFDNSYFKDIKERRDEDLLVLPTDAALFEDPSFKVYA--EKYAAD 243
Query: 276 QTDFFDTFGQAMIKMGNI 293
FF + +A K+ N+
Sbjct: 244 PEAFFKDYAEAHAKLSNL 261
>pdb|1APX|A Chain A, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|B Chain B, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|C Chain C, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|D Chain D, Crystal Structure Of Recombinant Ascorbate Peroxidase
Length = 249
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 82/197 (41%), Gaps = 46/197 (23%)
Query: 102 VVSCADILAIASQILVSLDGGPTWQVQLGRRDSRTANLAGTSGIPLGNETLDRISEKF-R 160
+VS AD +A + V + GGP GR D G +P + D + + F +
Sbjct: 89 IVSYADFYQLAGVVAVEITGGPEVPFHPGREDKPEPPPEGR--LPDATKGSDHLRDVFGK 146
Query: 161 AVGLDDPTDLVALSGAHTFGRARCVAFRNRLFNFDGAGNPDPTIDPTYLQTLRQNCPQGG 220
A+GL D D+VALSG HT G A + R F+G +P I
Sbjct: 147 AMGLSD-QDIVALSGGHTIG----AAHKERS-GFEGPWTSNPLI---------------- 184
Query: 221 NGNALVDLDPTTADGFDNNYFTNLQNNR--GL--LTSDQVLFSTTGAKTVAIVNRFANSQ 276
FDN+YFT L GL L SD+ L + + + +V ++A +
Sbjct: 185 ---------------FDNSYFTELLTGEKDGLLQLPSDKALLTDSVFRP--LVEKYAADE 227
Query: 277 TDFFDTFGQAMIKMGNI 293
FF + +A +K+ +
Sbjct: 228 DVFFADYAEAHLKLSEL 244
>pdb|2Y6B|A Chain A, Ascorbate Peroxidase R38k Mutant
Length = 249
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 69/290 (23%), Positives = 114/290 (39%), Gaps = 61/290 (21%)
Query: 17 TCPNVSSIVRGVVEQARNN------DARIGARLIRVHFHDC--FVNGCDGSLLLDDSAPG 68
+ P VS+ + VE+A+ + R ++++ +H F G P
Sbjct: 3 SYPTVSADYQKAVEKAKKKLRGFIAEKRCAPLMLKLAWHSAGTFDKGTK------TGGPF 56
Query: 69 GIQSEKNGNPNLSTGGYEVVDDIKTALENVCPGVVSCADILAIASQILVSLDGGPTWQVQ 128
G + + G ++ + L+ P ++S AD +A + V + GGP
Sbjct: 57 GTIKHPAELAHSANNGLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFH 115
Query: 129 LGRRDSRTANLAGTSGIPLGNETLDRISEKF-RAVGLDDPTDLVALSGAHTFGRARCVAF 187
GR D G +P + D + + F +A+GL D D+VALSG HT G A
Sbjct: 116 PGREDKPEPPPEGR--LPDATKGSDHLRDVFGKAMGLTD-QDIVALSGGHTIG----AAH 168
Query: 188 RNRLFNFDGAGNPDPTIDPTYLQTLRQNCPQGGNGNALVDLDPTTADGFDNNYFTNLQN- 246
+ R F+G +P I FDN+YFT L +
Sbjct: 169 KERS-GFEGPWTSNPLI-------------------------------FDNSYFTELLSG 196
Query: 247 -NRGL--LTSDQVLFSTTGAKTVAIVNRFANSQTDFFDTFGQAMIKMGNI 293
GL L SD+ L S + +V+++A + FF + +A K+ +
Sbjct: 197 EKEGLLQLPSDKALLSDPVFRP--LVDKYAADEDAFFADYAEAHQKLSEL 244
>pdb|2GGN|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHC|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHD|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHE|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2VCN|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant W41a
pdb|2VNX|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a After Exposure To A High Dose Of X-Rays
pdb|2VNZ|X Chain X, Crystal Structure Of Dithinonite Reduced Soybean Ascorbate
Peroxidase Mutant W41a.
pdb|2VO2|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a Subjected To Low Dose X-Rays
pdb|2WD4|A Chain A, Ascorbate Peroxidase As A Heme Oxygenase: W41a Variant
Product With T-Butyl Peroxide
Length = 261
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 70/290 (24%), Positives = 113/290 (38%), Gaps = 61/290 (21%)
Query: 17 TCPNVSSIVRGVVEQARNN------DARIGARLIRVHFHDC--FVNGCDGSLLLDDSAPG 68
+ P VS+ + VE+A+ + R ++R+ H F G P
Sbjct: 15 SYPTVSADYQKAVEKAKKKLRGFIAEKRCAPLMLRLAAHSAGTFDKGTK------TGGPF 68
Query: 69 GIQSEKNGNPNLSTGGYEVVDDIKTALENVCPGVVSCADILAIASQILVSLDGGPTWQVQ 128
G + + G ++ + L+ P ++S AD +A + V + GGP
Sbjct: 69 GTIKHPAELAHSANNGLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFH 127
Query: 129 LGRRDSRTANLAGTSGIPLGNETLDRISEKF-RAVGLDDPTDLVALSGAHTFGRARCVAF 187
GR D G +P + D + + F +A+GL D D+VALSG HT G A
Sbjct: 128 PGREDKPEPPPEGR--LPDATKGSDHLRDVFGKAMGLTD-QDIVALSGGHTIG----AAH 180
Query: 188 RNRLFNFDGAGNPDPTIDPTYLQTLRQNCPQGGNGNALVDLDPTTADGFDNNYFTNLQN- 246
+ R F+G +P I FDN+YFT L +
Sbjct: 181 KERS-GFEGPWTSNPLI-------------------------------FDNSYFTELLSG 208
Query: 247 -NRGL--LTSDQVLFSTTGAKTVAIVNRFANSQTDFFDTFGQAMIKMGNI 293
GL L SD+ L S + +V+++A + FF + +A K+ +
Sbjct: 209 EKEGLLQLPSDKALLSDPVFRP--LVDKYAADEDAFFADYAEAHQKLSEL 256
>pdb|3ZCG|A Chain A, Ascorbate Peroxidase W41a-h42c Mutant
Length = 261
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 82/197 (41%), Gaps = 46/197 (23%)
Query: 102 VVSCADILAIASQILVSLDGGPTWQVQLGRRDSRTANLAGTSGIPLGNETLDRISEKF-R 160
++S AD +A + V + GGP GR D G +P + D + + F +
Sbjct: 101 ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPEGR--LPDATKGSDHLRDVFGK 158
Query: 161 AVGLDDPTDLVALSGAHTFGRARCVAFRNRLFNFDGAGNPDPTIDPTYLQTLRQNCPQGG 220
A+GL D D+VALSG HT G A + R F+G +P I
Sbjct: 159 AMGLTD-QDIVALSGGHTIG----AAHKERS-GFEGPWTSNPLI---------------- 196
Query: 221 NGNALVDLDPTTADGFDNNYFTNLQN--NRGL--LTSDQVLFSTTGAKTVAIVNRFANSQ 276
FDN+YFT L + GL L SD+ L S + +V+++A +
Sbjct: 197 ---------------FDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRP--LVDKYAADE 239
Query: 277 TDFFDTFGQAMIKMGNI 293
FF + +A K+ +
Sbjct: 240 DAFFADYAEAHQKLSEL 256
>pdb|3ZCY|A Chain A, Ascorbate Peroxidase W41a-h42y Mutant
Length = 249
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 82/197 (41%), Gaps = 46/197 (23%)
Query: 102 VVSCADILAIASQILVSLDGGPTWQVQLGRRDSRTANLAGTSGIPLGNETLDRISEKF-R 160
++S AD +A + V + GGP GR D G +P + D + + F +
Sbjct: 89 ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPEGR--LPDATKGSDHLRDVFGK 146
Query: 161 AVGLDDPTDLVALSGAHTFGRARCVAFRNRLFNFDGAGNPDPTIDPTYLQTLRQNCPQGG 220
A+GL D D+VALSG HT G A + R F+G +P I
Sbjct: 147 AMGLTD-QDIVALSGGHTIG----AAHKERS-GFEGPWTSNPLI---------------- 184
Query: 221 NGNALVDLDPTTADGFDNNYFTNLQN--NRGL--LTSDQVLFSTTGAKTVAIVNRFANSQ 276
FDN+YFT L + GL L SD+ L S + +V+++A +
Sbjct: 185 ---------------FDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRP--LVDKYAADE 227
Query: 277 TDFFDTFGQAMIKMGNI 293
FF + +A K+ +
Sbjct: 228 DAFFADYAEAHQKLSEL 244
>pdb|2Y6A|A Chain A, Ascorbate Peroxidase R38a Mutant
Length = 249
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 82/197 (41%), Gaps = 46/197 (23%)
Query: 102 VVSCADILAIASQILVSLDGGPTWQVQLGRRDSRTANLAGTSGIPLGNETLDRISEKF-R 160
++S AD +A + V + GGP GR D G +P + D + + F +
Sbjct: 89 ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPEGR--LPDATKGSDHLRDVFGK 146
Query: 161 AVGLDDPTDLVALSGAHTFGRARCVAFRNRLFNFDGAGNPDPTIDPTYLQTLRQNCPQGG 220
A+GL D D+VALSG HT G A + R F+G +P I
Sbjct: 147 AMGLTD-QDIVALSGGHTIGAAH----KERS-GFEGPWTSNPLI---------------- 184
Query: 221 NGNALVDLDPTTADGFDNNYFTNLQN--NRGL--LTSDQVLFSTTGAKTVAIVNRFANSQ 276
FDN+YFT L + GL L SD+ L S + +V+++A +
Sbjct: 185 ---------------FDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRP--LVDKYAADE 227
Query: 277 TDFFDTFGQAMIKMGNI 293
FF + +A K+ +
Sbjct: 228 DAFFADYAEAHQKLSEL 244
>pdb|3ZCH|A Chain A, Ascorbate Peroxidase W41a-h42m Mutant
Length = 261
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 82/197 (41%), Gaps = 46/197 (23%)
Query: 102 VVSCADILAIASQILVSLDGGPTWQVQLGRRDSRTANLAGTSGIPLGNETLDRISEKF-R 160
++S AD +A + V + GGP GR D G +P + D + + F +
Sbjct: 101 ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPEGR--LPDATKGSDHLRDVFGK 158
Query: 161 AVGLDDPTDLVALSGAHTFGRARCVAFRNRLFNFDGAGNPDPTIDPTYLQTLRQNCPQGG 220
A+GL D D+VALSG HT G A + R F+G +P I
Sbjct: 159 AMGLTD-QDIVALSGGHTIG----AAHKERS-GFEGPWTSNPLI---------------- 196
Query: 221 NGNALVDLDPTTADGFDNNYFTNLQN--NRGL--LTSDQVLFSTTGAKTVAIVNRFANSQ 276
FDN+YFT L + GL L SD+ L S + +V+++A +
Sbjct: 197 ---------------FDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRP--LVDKYAADE 239
Query: 277 TDFFDTFGQAMIKMGNI 293
FF + +A K+ +
Sbjct: 240 DAFFADYAEAHQKLSEL 256
>pdb|2VCS|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant H42a
Length = 261
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 82/197 (41%), Gaps = 46/197 (23%)
Query: 102 VVSCADILAIASQILVSLDGGPTWQVQLGRRDSRTANLAGTSGIPLGNETLDRISEKF-R 160
++S AD +A + V + GGP GR D G +P + D + + F +
Sbjct: 101 ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPEGR--LPDATKGSDHLRDVFGK 158
Query: 161 AVGLDDPTDLVALSGAHTFGRARCVAFRNRLFNFDGAGNPDPTIDPTYLQTLRQNCPQGG 220
A+GL D D+VALSG HT G A + R F+G +P I
Sbjct: 159 AMGLTD-QDIVALSGGHTIG----AAHKERS-GFEGPWTSNPLI---------------- 196
Query: 221 NGNALVDLDPTTADGFDNNYFTNLQN--NRGL--LTSDQVLFSTTGAKTVAIVNRFANSQ 276
FDN+YFT L + GL L SD+ L S + +V+++A +
Sbjct: 197 ---------------FDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRP--LVDKYAADE 239
Query: 277 TDFFDTFGQAMIKMGNI 293
FF + +A K+ +
Sbjct: 240 DAFFADYAEAHQKLSEL 256
>pdb|1JCI|A Chain A, Stabilization Of The Engineered Cation-Binding Loop In
Cytochrome C Peroxidase (Ccp)
Length = 294
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 76/188 (40%), Gaps = 20/188 (10%)
Query: 103 VSCADILAIASQILVSLDGGPTWQVQLGRRDSRTANLAGTSGIPLGNETLDRISEKFRAV 162
+S D+ ++ V GP + GR D+ +P ++ D + F+ +
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQRL 161
Query: 163 GLDDPTDLVALSGAHTFGRARCVAFRNRLFNFDGAGNPDPTIDPTYLQTLRQNCPQGGNG 222
++D ++VAL GAHT G+ +N + NP+ + YL L ++ N
Sbjct: 162 NMND-REVVALMGAHTLGKTHL---KNSGYEGPWTANPNVFDNSFYLNLLNEDWKLEKND 217
Query: 223 NALVDLDPTTADGFDNNYFTNLQNNRGLLTSDQVLFSTTGAKTVAIVNRFANSQTDFFDT 282
NN + ++ +L +D L K ++IV +AN Q FF
Sbjct: 218 A--------------NNEQWDSKSGYMMLPTDYSLIQD--PKYLSIVKEYANDQDKFFKD 261
Query: 283 FGQAMIKM 290
F +A K+
Sbjct: 262 FSKAFEKL 269
>pdb|1STQ|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m3
Length = 294
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 76/205 (37%), Gaps = 54/205 (26%)
Query: 103 VSCADILAIASQILVSLDGGPTWQVQLGRRDSRTANLAGTSGIPLGNETLDRISEKFRAV 162
+S D+ ++ V GP + GR D+ +P ++ D + F+ +
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQRL 161
Query: 163 GLDDPTDLVALSGAHTFGRARCVAFRNRLFNFDGAGNPDPTIDPTYLQTLRQNCPQGGNG 222
++D ++VALSGAHT G+ T+L+ P N
Sbjct: 162 NMND-REVVALSGAHTLGK-------------------------THLKNSGYEGPWTANN 195
Query: 223 NALVDLDPTTADGFDNNYFTNLQNNRGLLTSD----QVLFSTTG-------------AKT 265
N FDN+++ NL N L + + S +G K
Sbjct: 196 NV-----------FDNSFYLNLLNEDWKLEKNDANNEQWDSKSGYLQLPTDYSLIQDPKY 244
Query: 266 VAIVNRFANSQTDFFDTFGQAMIKM 290
++IV +AN Q FF F +A K+
Sbjct: 245 LSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1SOG|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m2
Length = 294
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 75/205 (36%), Gaps = 54/205 (26%)
Query: 103 VSCADILAIASQILVSLDGGPTWQVQLGRRDSRTANLAGTSGIPLGNETLDRISEKFRAV 162
+S D+ ++ V GP + GR D+ +P ++ D + F+ +
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQRL 161
Query: 163 GLDDPTDLVALSGAHTFGRARCVAFRNRLFNFDGAGNPDPTIDPTYLQTLRQNCPQGGNG 222
++D ++VAL GAHT G+ T+L+ P N
Sbjct: 162 NMND-REVVALMGAHTLGK-------------------------THLKNSGYEGPWTANN 195
Query: 223 NALVDLDPTTADGFDNNYFTNLQNNRGLLTSD----QVLFSTTG-------------AKT 265
N FDN+++ NL N L + + S +G K
Sbjct: 196 NV-----------FDNSFYLNLLNEDWKLEKNDANNEQWDSKSGYLQLPTDYSLIQDPKY 244
Query: 266 VAIVNRFANSQTDFFDTFGQAMIKM 290
++IV +AN Q FF F +A K+
Sbjct: 245 LSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1JDR|A Chain A, Crystal Structure Of A Proximal Domain Potassium Binding
Variant Of Cytochrome C Peroxidase
Length = 294
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 75/205 (36%), Gaps = 54/205 (26%)
Query: 103 VSCADILAIASQILVSLDGGPTWQVQLGRRDSRTANLAGTSGIPLGNETLDRISEKFRAV 162
+S D+ ++ V GP + GR D+ +P ++ D + F+ +
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQRL 161
Query: 163 GLDDPTDLVALSGAHTFGRARCVAFRNRLFNFDGAGNPDPTIDPTYLQTLRQNCPQGGNG 222
++D ++VAL GAHT G+ T+L+ P N
Sbjct: 162 NMND-REVVALMGAHTLGK-------------------------THLKNSGYEGPWTANN 195
Query: 223 NALVDLDPTTADGFDNNYFTNLQNNRGLLTSD----QVLFSTTG-------------AKT 265
N FDN+++ NL N L + + S +G K
Sbjct: 196 NV-----------FDNSFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKY 244
Query: 266 VAIVNRFANSQTDFFDTFGQAMIKM 290
++IV +AN Q FF F +A K+
Sbjct: 245 LSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1KRJ|A Chain A, Engineering Calcium-Binding Site Into Cytochrome C
Peroxidase (Ccp)
Length = 294
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/205 (21%), Positives = 74/205 (36%), Gaps = 54/205 (26%)
Query: 103 VSCADILAIASQILVSLDGGPTWQVQLGRRDSRTANLAGTSGIPLGNETLDRISEKFRAV 162
+S D+ ++ V GP + GR D+ +P ++ D + F+ +
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQRL 161
Query: 163 GLDDPTDLVALSGAHTFGRARCVAFRNRLFNFDGAGNPDPTIDPTYLQTLRQNCPQGGNG 222
++D ++VAL GAHT G+ T+L+ P
Sbjct: 162 NMND-REVVALMGAHTLGK-------------------------THLKNSGYEGPWDATN 195
Query: 223 NALVDLDPTTADGFDNNYFTNLQNNRGLLTS----DQVLFSTTG-------------AKT 265
N FDN+++ NL N L ++ S +G K
Sbjct: 196 NV-----------FDNSFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKY 244
Query: 266 VAIVNRFANSQTDFFDTFGQAMIKM 290
++IV +AN Q FF F +A K+
Sbjct: 245 LSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|2V2E|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytochrome C
Peroxidase Mutant N184r Y36a
Length = 294
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 77/188 (40%), Gaps = 20/188 (10%)
Query: 103 VSCADILAIASQILVSLDGGPTWQVQLGRRDSRTANLAGTSGIPLGNETLDRISEKFRAV 162
+S D+ ++ V GP + GR D+ +P ++ D + F+ +
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQRL 161
Query: 163 GLDDPTDLVALSGAHTFGRARCVAFRNRLFNFDGAGNPDPTIDPTYLQTLRQNCPQGGNG 222
++D ++VAL GAH G+ R+ GA N + + YL L +N
Sbjct: 162 NMND-REVVALMGAHALGKTHLK--RSGYEGPWGAAN-NVFTNEFYLNLLNENW------ 211
Query: 223 NALVDLDPTTADGFDNNYFTNLQNNRGLLTSDQVLFSTTGAKTVAIVNRFANSQTDFFDT 282
L+ A NN + ++ +L +D L K ++IV +AN Q FF
Sbjct: 212 ----KLEKNDA----NNEQWDSKSGYMMLPTDYSLIQD--PKYLSIVKEYANDQDKFFKD 261
Query: 283 FGQAMIKM 290
F +A K+
Sbjct: 262 FSKAFEKL 269
>pdb|2XIL|A Chain A, The Structure Of Cytochrome C Peroxidase Compound I
Length = 294
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 75/188 (39%), Gaps = 20/188 (10%)
Query: 103 VSCADILAIASQILVSLDGGPTWQVQLGRRDSRTANLAGTSGIPLGNETLDRISEKFRAV 162
+S D+ ++ V GP + GR D+ +P ++ D + F+ +
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQRL 161
Query: 163 GLDDPTDLVALSGAHTFGRARCVAFRNRLFNFDGAGNPDPTIDPTYLQTLRQNCPQGGNG 222
++D ++VAL GAH G+ +N + + + YL L +N
Sbjct: 162 NMND-REVVALMGAHALGKTHL---KNSGYEGPWGAANNVFTNEFYLNLLNENW------ 211
Query: 223 NALVDLDPTTADGFDNNYFTNLQNNRGLLTSDQVLFSTTGAKTVAIVNRFANSQTDFFDT 282
L+ A NN + ++ +L +D L K ++IV +AN Q FF
Sbjct: 212 ----KLEKNDA----NNEQWDSKSGYMMLPTDYSLIQD--PKYLSIVKEYANDQDKFFKD 261
Query: 283 FGQAMIKM 290
F +A K+
Sbjct: 262 FSKAFEKL 269
>pdb|2V23|A Chain A, Structure Of Cytochrome C Peroxidase Mutant N184r Y36a
pdb|4A6Z|A Chain A, Cytochrome C Peroxidase With Bound Guaiacol
Length = 296
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 77/188 (40%), Gaps = 20/188 (10%)
Query: 103 VSCADILAIASQILVSLDGGPTWQVQLGRRDSRTANLAGTSGIPLGNETLDRISEKFRAV 162
+S D+ ++ V GP + GR D+ +P ++ D + F+ +
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQRL 163
Query: 163 GLDDPTDLVALSGAHTFGRARCVAFRNRLFNFDGAGNPDPTIDPTYLQTLRQNCPQGGNG 222
++D ++VAL GAH G+ R+ GA N + + YL L +N
Sbjct: 164 NMND-REVVALMGAHALGKTHLK--RSGYEGPWGAAN-NVFTNEFYLNLLNENW------ 213
Query: 223 NALVDLDPTTADGFDNNYFTNLQNNRGLLTSDQVLFSTTGAKTVAIVNRFANSQTDFFDT 282
L+ A NN + ++ +L +D L K ++IV +AN Q FF
Sbjct: 214 ----KLEKNDA----NNEQWDSKSGYMMLPTDYSLIQD--PKYLSIVKEYANDQDKFFKD 263
Query: 283 FGQAMIKM 290
F +A K+
Sbjct: 264 FSKAFEKL 271
>pdb|1KXM|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 290
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 77/188 (40%), Gaps = 22/188 (11%)
Query: 103 VSCADILAIASQILVSLDGGPTWQVQLGRRDSRTANLAGTSGIPLGNETLDRISEKFRAV 162
+S D+ ++ V GP + GR D+ +P ++ + F+ +
Sbjct: 100 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 159
Query: 163 GLDDPTDLVALSGAHTFGRARCVAFRNRLFNFDGAGNPDPTIDPTYLQTLRQNCPQGGNG 222
++D ++VAL GAH G+ +N ++G G + + YL L ++
Sbjct: 160 NMND-REVVALMGAHALGKTHL---KNS--GYEGGGANNVFTNEFYLNLLNEDW------ 207
Query: 223 NALVDLDPTTADGFDNNYFTNLQNNRGLLTSDQVLFSTTGAKTVAIVNRFANSQTDFFDT 282
L+ A NN + ++ +L +D L K ++IV +AN Q FF
Sbjct: 208 ----KLEKNDA----NNEQWDSKSGYMMLPTDYSLIQD--PKYLSIVKEYANDQDKFFKD 257
Query: 283 FGQAMIKM 290
F +A K+
Sbjct: 258 FSKAFEKL 265
>pdb|3EXB|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Pathway Excised In A Complex With A
Peptide Wire
Length = 295
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 77/188 (40%), Gaps = 22/188 (11%)
Query: 103 VSCADILAIASQILVSLDGGPTWQVQLGRRDSRTANLAGTSGIPLGNETLDRISEKFRAV 162
+S D+ ++ V GP + GR D+ +P ++ + F+ +
Sbjct: 105 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 164
Query: 163 GLDDPTDLVALSGAHTFGRARCVAFRNRLFNFDGAGNPDPTIDPTYLQTLRQNCPQGGNG 222
++D ++VAL GAH G+ +N ++G G + + YL L ++
Sbjct: 165 NMND-REVVALMGAHALGKTHL---KNS--GYEGGGANNVFTNEFYLNLLNEDW------ 212
Query: 223 NALVDLDPTTADGFDNNYFTNLQNNRGLLTSDQVLFSTTGAKTVAIVNRFANSQTDFFDT 282
L+ A NN + ++ +L +D L K ++IV +AN Q FF
Sbjct: 213 ----KLEKNDA----NNEQWDSKSGYMMLPTDYSLIQD--PKYLSIVKEYANDQDKFFKD 262
Query: 283 FGQAMIKM 290
F +A K+
Sbjct: 263 FSKAFEKL 270
>pdb|1KXN|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 289
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 77/188 (40%), Gaps = 22/188 (11%)
Query: 103 VSCADILAIASQILVSLDGGPTWQVQLGRRDSRTANLAGTSGIPLGNETLDRISEKFRAV 162
+S D+ ++ V GP + GR D+ +P ++ + F+ +
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 158
Query: 163 GLDDPTDLVALSGAHTFGRARCVAFRNRLFNFDGAGNPDPTIDPTYLQTLRQNCPQGGNG 222
++D ++VAL GAH G+ +N ++G G + + YL L ++
Sbjct: 159 NMND-REVVALMGAHALGKTHL---KNS--GYEGGGANNVFTNEFYLNLLNEDW------ 206
Query: 223 NALVDLDPTTADGFDNNYFTNLQNNRGLLTSDQVLFSTTGAKTVAIVNRFANSQTDFFDT 282
L+ A NN + ++ +L +D L K ++IV +AN Q FF
Sbjct: 207 ----KLEKNDA----NNEQWDSKSGYMMLPTDYSLIQD--PKYLSIVKEYANDQDKFFKD 256
Query: 283 FGQAMIKM 290
F +A K+
Sbjct: 257 FSKAFEKL 264
>pdb|1CPD|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPE|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPF|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 41/188 (21%), Positives = 75/188 (39%), Gaps = 20/188 (10%)
Query: 103 VSCADILAIASQILVSLDGGPTWQVQLGRRDSRTANLAGTSGIPLGNETLDRISEKFRAV 162
+S D+ ++ V GP + GR D+ +P ++ + F+ +
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 163
Query: 163 GLDDPTDLVALSGAHTFGRARCVAFRNRLFNFDGAGNPDPTIDPTYLQTLRQNCPQGGNG 222
++D ++VAL GAH G+ +N + G + + YL L ++
Sbjct: 164 NMND-REVVALMGAHALGKTHL---KNSGYEGPGGAANNVFTNEFYLNLLNEDW------ 213
Query: 223 NALVDLDPTTADGFDNNYFTNLQNNRGLLTSDQVLFSTTGAKTVAIVNRFANSQTDFFDT 282
L+ A NN + ++ +L +D L K ++IV +AN Q FF
Sbjct: 214 ----KLEKNDA----NNEQWDSKSGYMMLPTDYSLIQD--PKYLSIVKEYANDQDKFFKD 263
Query: 283 FGQAMIKM 290
F +A K+
Sbjct: 264 FSKAFEKL 271
>pdb|2ANZ|A Chain A, Cytochrome C Peroxidase In Complex With
2,6-Diaminopyridine
pdb|1AC4|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2,3,4-Trimethyl-1,3-Thiazole)
pdb|1AC8|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (3,4,5-Trimethylthiazole)
pdb|1AEB|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Methylthiazole)
pdb|1AED|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3,4-
Dimethylthiazole)
pdb|1AEE|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Aniline)
pdb|1AEF|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Aminopyridine)
pdb|1AEG|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (4-
Aminopyridine)
pdb|1AEH|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-4-
Methylthiazole)
pdb|1AEJ|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (1-
Vinylimidazole)
pdb|1AEK|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Indoline)
pdb|1AEM|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazo[1,2-
A]pyridine)
pdb|1AEN|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-5-
Methylthiazole)
pdb|1AEO|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-
Aminopyridine)
pdb|1AEQ|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2-Ethylimidazole)
pdb|1AES|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazole)
pdb|1AET|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (1-Methylimidazole)
pdb|1AEU|A Chain A, Specificity Of Ligand Binding In A Polar Cavity Of
Cytochrome C Peroxidase (2-Methylimidazole)
pdb|1AEV|A Chain A, Introduction Of Novel Substrate Oxidation Into Cytochrome
C Peroxidase By Cavity Complementation: Oxidation Of 2-
Aminothiazole And Covalent Modification Of The Enzyme
(2- Aminothiazole)
Length = 294
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 41/188 (21%), Positives = 75/188 (39%), Gaps = 20/188 (10%)
Query: 103 VSCADILAIASQILVSLDGGPTWQVQLGRRDSRTANLAGTSGIPLGNETLDRISEKFRAV 162
+S D+ ++ V GP + GR D+ +P ++ + F+ +
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 161
Query: 163 GLDDPTDLVALSGAHTFGRARCVAFRNRLFNFDGAGNPDPTIDPTYLQTLRQNCPQGGNG 222
++D ++VAL GAH G+ +N + G + + YL L ++
Sbjct: 162 NMND-REVVALMGAHALGKTHL---KNSGYEGPGGAANNVFTNEFYLNLLNEDW------ 211
Query: 223 NALVDLDPTTADGFDNNYFTNLQNNRGLLTSDQVLFSTTGAKTVAIVNRFANSQTDFFDT 282
L+ A NN + ++ +L +D L K ++IV +AN Q FF
Sbjct: 212 ----KLEKNDA----NNEQWDSKSGYMMLPTDYSLIQD--PKYLSIVKEYANDQDKFFKD 261
Query: 283 FGQAMIKM 290
F +A K+
Sbjct: 262 FSKAFEKL 269
>pdb|1BEJ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 41/188 (21%), Positives = 75/188 (39%), Gaps = 20/188 (10%)
Query: 103 VSCADILAIASQILVSLDGGPTWQVQLGRRDSRTANLAGTSGIPLGNETLDRISEKFRAV 162
+S D+ ++ V GP + GR D+ +P ++ + F+ +
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 158
Query: 163 GLDDPTDLVALSGAHTFGRARCVAFRNRLFNFDGAGNPDPTIDPTYLQTLRQNCPQGGNG 222
++D ++VAL GAH G+ +N + G + + YL L ++
Sbjct: 159 NMND-REVVALMGAHALGKTHL---KNSGYEGPGGAANNVFTNEFYLNLLNEDW------ 208
Query: 223 NALVDLDPTTADGFDNNYFTNLQNNRGLLTSDQVLFSTTGAKTVAIVNRFANSQTDFFDT 282
L+ A NN + ++ +L +D L K ++IV +AN Q FF
Sbjct: 209 ----KLEKNDA----NNEQWDSKSGYMMLPTDYSLIQD--PKYLSIVKEYANDQDKFFKD 258
Query: 283 FGQAMIKM 290
F +A K+
Sbjct: 259 FSKAFEKL 266
>pdb|2AQD|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,5-
Diaminopyridine
pdb|2AS1|A Chain A, Cytochrome C Peroxidase In Complex With Thiopheneamidine
pdb|2AS2|A Chain A, Cytochrome C Peroxidase In Complex With 2-Iminopiperidine
pdb|2AS3|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
pdb|2AS4|A Chain A, Cytochrome C Peroxidase In Complex With 3-Fluorocatechol
pdb|2AS6|A Chain A, Cytochrome C Peroxidase In Complex With Cyclopentylamine
pdb|2EUN|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,4-
Diaminopyrimidine
pdb|2EUO|A Chain A, Cytochrome C Peroxidase (ccp) In Complex With 1-methyl-1-
Lambda-5-pyridin-3-yl-amine
pdb|2EUP|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-5-
Picoline
pdb|2EUQ|A Chain A, Cytochrome C Peroxydase (Ccp) In Complex With 3-
Thienylmethylamine
pdb|2EUR|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 4-
Pyridylcarbinol
pdb|2EUS|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With Benzylamine
pdb|2EUT|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-4-
Picoline
pdb|2EUU|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With
1h-Imidazol-2- Ylmethanol
pdb|1AA4|A Chain A, Specificity Of Ligand Binding In A Buried Polar Cavity Of
Cytochrome C Peroxidase
pdb|1CMP|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMQ|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMT|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
pdb|1RYC|A Chain A, Cytochrome C Peroxidase W191g From Saccharomyces
Cerevisiae
pdb|2Y5A|A Chain A, Cytochrome C Peroxidase (Ccp) W191g Bound To
3-Aminopyridine
Length = 294
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 41/188 (21%), Positives = 75/188 (39%), Gaps = 20/188 (10%)
Query: 103 VSCADILAIASQILVSLDGGPTWQVQLGRRDSRTANLAGTSGIPLGNETLDRISEKFRAV 162
+S D+ ++ V GP + GR D+ +P ++ + F+ +
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 161
Query: 163 GLDDPTDLVALSGAHTFGRARCVAFRNRLFNFDGAGNPDPTIDPTYLQTLRQNCPQGGNG 222
++D ++VAL GAH G+ +N + G + + YL L ++
Sbjct: 162 NMND-REVVALMGAHALGKTHL---KNSGYEGPGGAANNVFTNEFYLNLLNEDW------ 211
Query: 223 NALVDLDPTTADGFDNNYFTNLQNNRGLLTSDQVLFSTTGAKTVAIVNRFANSQTDFFDT 282
L+ A NN + ++ +L +D L K ++IV +AN Q FF
Sbjct: 212 ----KLEKNDA----NNEQWDSKSGYMMLPTDYSLIQD--PKYLSIVKEYANDQDKFFKD 261
Query: 283 FGQAMIKM 290
F +A K+
Sbjct: 262 FSKAFEKL 269
>pdb|2RBU|X Chain X, Cytochrome C Peroxidase In Complex With
Cyclopentane-Carboximidamide
pdb|2RBV|X Chain X, Cytochrome C Peroxidase In Complex With
(1-Methyl-1h-Pyrrol-2-Yl)- Methylamine
pdb|2RBW|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1,2-dimethyl-1h-pyridin- 5-amine
pdb|2RBY|X Chain X, 1-methyl-5-imidazolecarboxaldehyde In Complex With
Cytochrome C Peroxidase W191g
pdb|2RBZ|X Chain X, Cytochrome C Peroxidase W191g In Complex 3-Methoxypyridine
pdb|2RC0|X Chain X, Cytochrome C Peroxidase W191g In Complex With 2-Imino-4-
Methylpiperdine
pdb|2RC2|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1-Methyl-2-Vinyl- Pyridinium
pdb|2RBT|X Chain X, N-Methylbenzylamine In Complex With Cytochrome C
Peroxidase W191g
pdb|2RBX|X Chain X, Cytochrome C Peroxidase W191g In Complex With
Pyrimidine-2,4,6- Triamine.
pdb|2RC1|X Chain X, Cytochrome C Peroxidase W191g In Complex With
2,4,5-Trimethyl-3- Oxazoline
Length = 292
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 41/188 (21%), Positives = 75/188 (39%), Gaps = 20/188 (10%)
Query: 103 VSCADILAIASQILVSLDGGPTWQVQLGRRDSRTANLAGTSGIPLGNETLDRISEKFRAV 162
+S D+ ++ V GP + GR D+ +P ++ + F+ +
Sbjct: 100 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 159
Query: 163 GLDDPTDLVALSGAHTFGRARCVAFRNRLFNFDGAGNPDPTIDPTYLQTLRQNCPQGGNG 222
++D ++VAL GAH G+ +N + G + + YL L ++
Sbjct: 160 NMND-REVVALMGAHALGKTHL---KNSGYEGPGGAANNVFTNEFYLNLLNEDW------ 209
Query: 223 NALVDLDPTTADGFDNNYFTNLQNNRGLLTSDQVLFSTTGAKTVAIVNRFANSQTDFFDT 282
L+ A NN + ++ +L +D L K ++IV +AN Q FF
Sbjct: 210 ----KLEKNDA----NNEQWDSKSGYMMLPTDYSLIQD--PKYLSIVKEYANDQDKFFKD 259
Query: 283 FGQAMIKM 290
F +A K+
Sbjct: 260 FSKAFEKL 267
>pdb|1BEM|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 73/196 (37%), Gaps = 36/196 (18%)
Query: 103 VSCADILAIASQILVSLDGGPTWQVQLGRRDSRTANLAGTSGIPLGNETLDRISEKFRAV 162
+S D+ ++ V GP + GR D+ +P ++ + F+ +
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 158
Query: 163 GLDDPTDLVALSGAHTFGRARCVAFRNRLFNFDGAGNPDPTIDPTYLQTLRQNCPQGGNG 222
++D ++VAL GAH G+ T+L+ PQG
Sbjct: 159 NMND-REVVALMGAHALGK-------------------------THLKNSGYEGPQGAAN 192
Query: 223 NA--------LVDLDPTTADGFDNNYFTNLQNNRGLLTSDQVLFSTTGAKTVAIVNRFAN 274
N L++ D NN + ++ +L +D L K ++IV +AN
Sbjct: 193 NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQD--PKYLSIVKEYAN 250
Query: 275 SQTDFFDTFGQAMIKM 290
Q FF F +A K+
Sbjct: 251 DQDKFFKDFSKAFEKL 266
>pdb|1CPG|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 73/196 (37%), Gaps = 36/196 (18%)
Query: 103 VSCADILAIASQILVSLDGGPTWQVQLGRRDSRTANLAGTSGIPLGNETLDRISEKFRAV 162
+S D+ ++ V GP + GR D+ +P ++ + F+ +
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 163
Query: 163 GLDDPTDLVALSGAHTFGRARCVAFRNRLFNFDGAGNPDPTIDPTYLQTLRQNCPQGGNG 222
++D ++VAL GAH G+ T+L+ PQG
Sbjct: 164 NMND-REVVALMGAHALGK-------------------------THLKNSGYEGPQGAAN 197
Query: 223 NA--------LVDLDPTTADGFDNNYFTNLQNNRGLLTSDQVLFSTTGAKTVAIVNRFAN 274
N L++ D NN + ++ +L +D L K ++IV +AN
Sbjct: 198 NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQD--PKYLSIVKEYAN 255
Query: 275 SQTDFFDTFGQAMIKM 290
Q FF F +A K+
Sbjct: 256 DQDKFFKDFSKAFEKL 271
>pdb|1CMU|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
Length = 294
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 39/188 (20%), Positives = 70/188 (37%), Gaps = 20/188 (10%)
Query: 103 VSCADILAIASQILVSLDGGPTWQVQLGRRDSRTANLAGTSGIPLGNETLDRISEKFRAV 162
+S D+ ++ V GP + GR D+ +P ++ + F+ +
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 161
Query: 163 GLDDPTDLVALSGAHTFGRARCVAFRNRLFNFDGAGNPDPTIDPTYLQTLRQNCPQGGNG 222
++D ++VAL GAH G+ +N + G + + YL L ++ N
Sbjct: 162 NMND-REVVALMGAHALGKTHL---KNSGYEGPGGAANNVFTNEFYLNLLNEDWKLEKND 217
Query: 223 NALVDLDPTTADGFDNNYFTNLQNNRGLLTSDQVLFSTTGAKTVAIVNRFANSQTDFFDT 282
D + + L N L+ K ++IV +AN Q FF
Sbjct: 218 ANNEQWDSKSG-------YMMLPTNYSLIQD---------PKYLSIVKEYANDQDKFFKD 261
Query: 283 FGQAMIKM 290
F +A K+
Sbjct: 262 FSKAFEKL 269
>pdb|1CCL|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 35.4 bits (80), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 40/188 (21%), Positives = 74/188 (39%), Gaps = 20/188 (10%)
Query: 103 VSCADILAIASQILVSLDGGPTWQVQLGRRDSRTANLAGTSGIPLGNETLDRISEKFRAV 162
+S D+ ++ V GP + GR D+ +P ++ + F+ +
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 158
Query: 163 GLDDPTDLVALSGAHTFGRARCVAFRNRLFNFDGAGNPDPTIDPTYLQTLRQNCPQGGNG 222
++D ++VAL GAH G+ +N + + + YL L ++
Sbjct: 159 NMND-REVVALMGAHALGKTHL---KNSGYEGPWGAANNVFTNEKYLNLLNEDW------ 208
Query: 223 NALVDLDPTTADGFDNNYFTNLQNNRGLLTSDQVLFSTTGAKTVAIVNRFANSQTDFFDT 282
L+ A NN + ++ +L +D L K ++IV +AN Q FF
Sbjct: 209 ----KLEKNDA----NNEQWDSKSGYMMLPTDYSLIQD--PKYLSIVKEYANDQDKFFKD 258
Query: 283 FGQAMIKM 290
F +A K+
Sbjct: 259 FSKAFEKL 266
>pdb|1A2F|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 35.4 bits (80), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 40/188 (21%), Positives = 74/188 (39%), Gaps = 20/188 (10%)
Query: 103 VSCADILAIASQILVSLDGGPTWQVQLGRRDSRTANLAGTSGIPLGNETLDRISEKFRAV 162
+S D+ ++ V GP + GR D+ +P ++ + F+ +
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 158
Query: 163 GLDDPTDLVALSGAHTFGRARCVAFRNRLFNFDGAGNPDPTIDPTYLQTLRQNCPQGGNG 222
++D ++VAL GAH G+ +N + + + YL L ++
Sbjct: 159 NMND-REVVALKGAHALGKTHL---KNSGYEGPWGAANNVFTNEFYLNLLNEDW------ 208
Query: 223 NALVDLDPTTADGFDNNYFTNLQNNRGLLTSDQVLFSTTGAKTVAIVNRFANSQTDFFDT 282
L+ A NN + ++ +L +D L K ++IV +AN Q FF
Sbjct: 209 ----KLEKNDA----NNEQWDSKSGYMMLPTDYSLIQD--PKYLSIVKEYANDQDKFFKD 258
Query: 283 FGQAMIKM 290
F +A K+
Sbjct: 259 FSKAFEKL 266
>pdb|2RJP|A Chain A, Crystal Structure Of Adamts4 With Inhibitor Bound
pdb|2RJP|B Chain B, Crystal Structure Of Adamts4 With Inhibitor Bound
pdb|2RJP|C Chain C, Crystal Structure Of Adamts4 With Inhibitor Bound
pdb|2RJP|D Chain D, Crystal Structure Of Adamts4 With Inhibitor Bound
pdb|3B2Z|A Chain A, Crystal Structure Of Adamts4 (Apo Form)
pdb|3B2Z|B Chain B, Crystal Structure Of Adamts4 (Apo Form)
pdb|3B2Z|C Chain C, Crystal Structure Of Adamts4 (Apo Form)
pdb|3B2Z|D Chain D, Crystal Structure Of Adamts4 (Apo Form)
pdb|3B2Z|E Chain E, Crystal Structure Of Adamts4 (Apo Form)
pdb|3B2Z|F Chain F, Crystal Structure Of Adamts4 (Apo Form)
pdb|3B2Z|G Chain G, Crystal Structure Of Adamts4 (Apo Form)
pdb|3B2Z|H Chain H, Crystal Structure Of Adamts4 (Apo Form)
Length = 316
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 34/80 (42%), Gaps = 8/80 (10%)
Query: 196 GAGNPDPTIDPTYLQTLRQNCPQGGNGNALVDLDPTTADGFDNNYFTNLQNNRGLLTSDQ 255
G+G P + P+ QTLR C N D DP D FD Q+ G+ T D
Sbjct: 61 GSGEEGPQVGPSAAQTLRSFCAWQRGLNTPEDSDP---DHFDTAILFTRQDLCGVSTCDT 117
Query: 256 VLFSTTG-----AKTVAIVN 270
+ + G A++ AIV
Sbjct: 118 LGMADVGTVCDPARSCAIVE 137
>pdb|2HRO|A Chain A, Structure Of The Full-Lenght Enzyme I Of The Pts System
From Staphylococcus Carnosus
Length = 573
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 79 NLSTGGYEVVDDIKTALENVCPGVVSCADILA 110
NL GYEV DDI+ + P + ADI A
Sbjct: 413 NLKNEGYEVADDIELGIMVEIPSTAALADIFA 444
>pdb|1YIZ|A Chain A, Aedes Aegypti Kynurenine Aminotrasferase
pdb|1YIZ|B Chain B, Aedes Aegypti Kynurenine Aminotrasferase
pdb|2R5C|A Chain A, Aedes Kynurenine Aminotransferase In Complex With Cysteine
Length = 429
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 21/49 (42%)
Query: 42 RLIRVHFHDCFVNGCDGSLLLDDSAPGGIQSEKNGNPNLSTGGYEVVDD 90
L R+ +C+ N G L+ +E NP + GGY +V D
Sbjct: 303 ELKRLKSPECYFNSISGELMAKRDYMASFLAEVGMNPTVPQGGYFMVAD 351
>pdb|1YIY|A Chain A, Aedes Aegypti Kynurenine Aminotransferase
pdb|1YIY|B Chain B, Aedes Aegypti Kynurenine Aminotransferase
pdb|2R5C|B Chain B, Aedes Kynurenine Aminotransferase In Complex With Cysteine
pdb|2R5E|A Chain A, Aedes Kynurenine Aminotransferase In Complex With
Glutamine
pdb|2R5E|B Chain B, Aedes Kynurenine Aminotransferase In Complex With
Glutamine
Length = 429
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 21/49 (42%)
Query: 42 RLIRVHFHDCFVNGCDGSLLLDDSAPGGIQSEKNGNPNLSTGGYEVVDD 90
L R+ +C+ N G L+ +E NP + GGY +V D
Sbjct: 303 ELKRLKSPECYFNSISGELMAKRDYMASFLAEVGMNPTVPQGGYFMVAD 351
>pdb|2QR8|A Chain A, 2.0a X-ray Structure Of C-terminal Kinase Domain Of P90
Ribosomal S6 Kinase 2 (rsk2)
pdb|4D9U|A Chain A, Rsk2 C-Terminal Kinase Domain, (E)-Tert-Butyl
3-(4-Amino-7-(3-
Hydroxypropyl)-5-P-Tolyl-7h-Pyrrolo[2,
3-D]pyrimidin-6-Yl)-2- Cyanoacrylate
pdb|4D9T|A Chain A, Rsk2 C-Terminal Kinase Domain With Inhibitor (E)-Methyl
3-(4-Amino-7-
(3-Hydroxypropyl)-5-P-Tolyl-7h-Pyrrolo[2,
3-D]pyrimidin-6-Yl)-2- Cyanoacrylate
Length = 342
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 29/137 (21%), Positives = 54/137 (39%), Gaps = 17/137 (12%)
Query: 82 TGGYEVVDDIKTALENVCPGVVSCADILAIASQILVSLDGGPTWQVQLGRRDSRTANLAG 141
T GYEV +DI +VC + A + A +I+ PT ++++ R + N+
Sbjct: 21 TDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKRDPTEEIEILLRYGQHPNIIT 80
Query: 142 -------------TSGIPLGNETLDRISEKFRAVGLDDPTDLVALSGAHTFGRARCVAFR 188
+ + G E LD+I + + L ++ + A+ V R
Sbjct: 81 LKDVYDDGKYVYVVTELMKGGELLDKILRQKFFSEREASAVLFTITKTVEYLHAQGVVHR 140
Query: 189 N----RLFNFDGAGNPD 201
+ + D +GNP+
Sbjct: 141 DLKPSNILYVDESGNPE 157
>pdb|3UT2|A Chain A, Crystal Structure Of Fungal Magkatg2
pdb|3UT2|B Chain B, Crystal Structure Of Fungal Magkatg2
Length = 764
Score = 27.7 bits (60), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 57/162 (35%), Gaps = 22/162 (13%)
Query: 138 NLAGTSGIPLGNETLDRISEKFRAVGLDDPTDLVALSGAHTFGRARCVAFRNRLFNFDGA 197
N G +G P + I E F +G++D + ++G H FG+ + +
Sbjct: 253 NPEGPNGTPDPAASAKDIREAFGRMGMNDTETVALIAGGHAFGKTHGAVKGSNI------ 306
Query: 198 GNPDPTIDPTYLQTL-RQNCPQGGNG-----NALVDLDPTTADGFDNNYFTNLQNNRGLL 251
P P +Q L N GNG + L + T + N Y +L NN L
Sbjct: 307 -GPAPEAADLGMQGLGWHNSVGDGNGPNQMTSGLEVIWTKTPTKWSNGYLESLINNNWTL 365
Query: 252 TSDQVLFSTTGAKTVAIVNRFANSQTDFFDTFGQAMIKMGNI 293
S GA V N D+ D F + + +
Sbjct: 366 VE-----SPAGAHQWEAV----NGTVDYPDPFDKTKFRKATM 398
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,924,911
Number of Sequences: 62578
Number of extensions: 439118
Number of successful extensions: 1138
Number of sequences better than 100.0: 70
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 1011
Number of HSP's gapped (non-prelim): 91
length of query: 313
length of database: 14,973,337
effective HSP length: 99
effective length of query: 214
effective length of database: 8,778,115
effective search space: 1878516610
effective search space used: 1878516610
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)