Query 039981
Match_columns 313
No_of_seqs 123 out of 1398
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 03:54:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039981.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039981hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03030 cationic peroxidase; 100.0 6E-101 1E-105 725.9 24.6 297 7-311 23-324 (324)
2 cd00693 secretory_peroxidase H 100.0 3.3E-97 7E-102 698.9 25.1 298 8-310 1-298 (298)
3 PF00141 peroxidase: Peroxidas 100.0 1.2E-69 2.6E-74 495.6 8.9 228 25-275 1-230 (230)
4 PLN02608 L-ascorbate peroxidas 100.0 1.2E-67 2.6E-72 493.0 21.2 232 22-308 14-257 (289)
5 cd00691 ascorbate_peroxidase A 100.0 3E-64 6.6E-69 465.0 19.8 232 19-297 10-252 (253)
6 cd00692 ligninase Ligninase an 100.0 1.6E-63 3.4E-68 472.9 22.1 237 21-312 16-288 (328)
7 PLN02364 L-ascorbate peroxidas 100.0 1.4E-63 3E-68 459.2 19.8 230 12-296 4-248 (250)
8 PLN02879 L-ascorbate peroxidas 100.0 5.6E-63 1.2E-67 454.5 19.7 221 21-296 16-248 (251)
9 cd00314 plant_peroxidase_like 100.0 6.7E-58 1.4E-62 423.8 18.8 220 24-292 2-255 (255)
10 cd00649 catalase_peroxidase_1 100.0 1.5E-57 3.4E-62 438.5 18.8 258 22-301 44-401 (409)
11 TIGR00198 cat_per_HPI catalase 100.0 1.8E-54 3.8E-59 441.0 19.2 256 22-299 54-406 (716)
12 PRK15061 catalase/hydroperoxid 100.0 5.9E-52 1.3E-56 420.4 18.9 258 22-301 56-414 (726)
13 cd08201 plant_peroxidase_like_ 100.0 1E-48 2.2E-53 359.8 14.8 210 34-292 36-264 (264)
14 cd08200 catalase_peroxidase_2 100.0 2.6E-42 5.5E-47 321.1 16.9 219 27-294 17-296 (297)
15 TIGR00198 cat_per_HPI catalase 100.0 1.3E-36 2.9E-41 310.2 16.3 221 23-295 428-710 (716)
16 PRK15061 catalase/hydroperoxid 100.0 2.3E-36 5E-41 306.9 17.1 220 27-295 442-722 (726)
17 COG0376 KatG Catalase (peroxid 100.0 1.7E-34 3.6E-39 281.6 16.3 251 24-294 71-416 (730)
18 COG0376 KatG Catalase (peroxid 99.6 1.7E-15 3.8E-20 149.1 12.3 216 27-294 452-725 (730)
19 PTZ00411 transaldolase-like pr 79.5 14 0.00031 35.9 9.5 132 120-284 180-327 (333)
20 PRK12309 transaldolase/EF-hand 69.3 44 0.00096 33.3 10.2 65 103-167 155-225 (391)
21 PRK05269 transaldolase B; Prov 62.9 45 0.00097 32.3 8.7 49 119-167 169-221 (318)
22 TIGR00874 talAB transaldolase. 59.7 61 0.0013 31.4 8.9 49 119-167 167-219 (317)
23 PF11895 DUF3415: Domain of un 57.2 9.2 0.0002 29.5 2.3 19 278-296 2-20 (80)
24 PRK12346 transaldolase A; Prov 45.0 15 0.00033 35.5 2.3 66 102-167 149-220 (316)
25 cd00957 Transaldolase_TalAB Tr 42.1 18 0.00038 35.0 2.2 65 103-167 149-219 (313)
26 COG3763 Uncharacterized protei 28.4 69 0.0015 24.2 2.9 31 22-52 22-52 (71)
27 cd00439 Transaldolase Transald 26.3 34 0.00074 31.9 1.3 48 120-167 159-210 (252)
28 PRK01362 putative translaldola 24.4 32 0.00068 31.3 0.6 39 120-167 121-159 (214)
29 COG0167 PyrD Dihydroorotate de 22.6 1.1E+02 0.0025 29.4 4.1 96 54-173 185-306 (310)
30 TIGR00875 fsa_talC_mipB fructo 20.2 38 0.00082 30.8 0.3 39 120-167 121-159 (213)
No 1
>PLN03030 cationic peroxidase; Provisional
Probab=100.00 E-value=6.4e-101 Score=725.94 Aligned_cols=297 Identities=46% Similarity=0.818 Sum_probs=281.8
Q ss_pred cCCCcccccCCCccHHHHHHHHHHHHHhcCccchhhHHHHhhhcccccCCCceeecCCCCCCCCCCccCCCCCCCCCccc
Q 039981 7 AQLSSTFYATTCPNVSSIVRGVVEQARNNDARIGARLIRVHFHDCFVNGCDGSLLLDDSAPGGIQSEKNGNPNLSTGGYE 86 (313)
Q Consensus 7 ~~l~~~~Y~~~Cp~~e~~Vr~~v~~~~~~~~~~a~~~lRl~FHDc~~~GcDgSill~~~~~~~~~~E~~~~~N~~l~g~~ 86 (313)
++|+++||++|||++|+||++.|++.+.++++++|++|||+|||||++||||||||+++ ..|+++++|.+++||+
T Consensus 23 ~~L~~~fY~~sCP~aE~iV~~~v~~~~~~d~~~aa~llRL~FHDCfv~GCDaSvLl~~~-----~~Ek~a~~N~~l~Gf~ 97 (324)
T PLN03030 23 QGTRVGFYSTTCPQAESIVRKTVQSHFQSNPAIAPGLLRMHFHDCFVRGCDASILIDGS-----NTEKTALPNLLLRGYD 97 (324)
T ss_pred ccCccchhhCcCCCHHHHHHHHHHHHHhhCcccchhhhhhhhhhheecCCceEEeeCCC-----cccccCCCCcCcchHH
Confidence 57999999999999999999999999999999999999999999999999999999854 3799999999889999
Q ss_pred hHHHHHHHHhhcCCCccchHHHHHHhhHhHhhhcCCCceEeeCCCCCCCCCCCcCCCCCCCCCCCHHHHHHHHHHCCCCC
Q 039981 87 VVDDIKTALENVCPGVVSCADILAIASQILVSLDGGPTWQVQLGRRDSRTANLAGTSGIPLGNETLDRISEKFRAVGLDD 166 (313)
Q Consensus 87 ~i~~iK~~le~~cp~~VS~ADiialaa~~av~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~ 166 (313)
+|+.||+.+|+.||++|||||||+||||+||+++|||.|+|++||||+++|.+..+.+||.|+.++++|++.|+++||+.
T Consensus 98 ~i~~iK~~~e~~CPg~VSCADilalAarDaV~~~gGP~~~v~~GRrDg~~s~~~~~~~LP~p~~~~~~l~~~F~~~Gl~~ 177 (324)
T PLN03030 98 VIDDAKTQLEAACPGVVSCADILALAARDSVVLTNGLTWPVPTGRRDGRVSLASDASNLPGFTDSIDVQKQKFAAKGLNT 177 (324)
T ss_pred HHHHHHHHHHhhCCCcccHHHHHHHHhhccccccCCCceeeeccccCCCCCCcccccCCcCCCCCHHHHHHHHHHcCCCH
Confidence 99999999999999999999999999999999999999999999999999876665589999999999999999999999
Q ss_pred ccchhhhccccccccccccccccccccCCCCC-CCCCCCCHHHHHHHHhcCCCCCCCCCcccCCCCCCCCCChHHHHHHh
Q 039981 167 PTDLVALSGAHTFGRARCVAFRNRLFNFDGAG-NPDPTIDPTYLQTLRQNCPQGGNGNALVDLDPTTADGFDNNYFTNLQ 245 (313)
Q Consensus 167 ~~elVaL~GaHtiG~~hc~~f~~rl~~~~g~~-~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~~d~~tp~~FDN~Yy~~l~ 245 (313)
+ |||+||||||||++||.+|.+|||||+|.+ .+||+||+.|+..|++.||..+++++.+++|..||.+|||+||++|+
T Consensus 178 ~-DlVaLsGAHTiG~ahC~~f~~Rlynf~~~~~~~Dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDn~Yy~nll 256 (324)
T PLN03030 178 Q-DLVTLVGGHTIGTTACQFFRYRLYNFTTTGNGADPSIDASFVPQLQALCPQNGDGSRRIALDTGSSNRFDASFFSNLK 256 (324)
T ss_pred H-HheeeeeccccceeeeeccccccccccCCCCCCCCchhHHHHHHHhccCCCCCCCCccccCCCCCCcccccHHHHHHH
Confidence 9 999999999999999999999999998874 58999999999999999996433334678999999999999999999
Q ss_pred cCcccccchhhhhccCChhHHHHHHHHhcCH----HHHHHHHHHHHHHhhcCCCCCCCCCcccccccccC
Q 039981 246 NNRGLLTSDQVLFSTTGAKTVAIVNRFANSQ----TDFFDTFGQAMIKMGNIRPLTGNNGEIRSNCRRIN 311 (313)
Q Consensus 246 ~~~g~l~sD~~L~~~~d~~t~~~v~~yA~d~----~~F~~~Fa~A~~Kms~lgv~tg~~GeiR~~C~~~n 311 (313)
.++|+|+||+.|+. |++|+++|++||.|+ +.|+++|++||+||++|+|+||.+|||||+|+.+|
T Consensus 257 ~~rGlL~SDq~L~~--d~~T~~~V~~~A~~~~~~~~~F~~~Fa~AmvKMg~i~VlTG~~GEIRk~C~~vN 324 (324)
T PLN03030 257 NGRGILESDQKLWT--DASTRTFVQRFLGVRGLAGLNFNVEFGRSMVKMSNIGVKTGTNGEIRKVCSAIN 324 (324)
T ss_pred hcCCCcCCchHhhc--CccHHHHHHHHhcccccchhhhHHHHHHHHHHHccCCCCCCCCCceeccccccC
Confidence 99999999999999 999999999999875 59999999999999999999999999999999998
No 2
>cd00693 secretory_peroxidase Horseradish peroxidase and related secretory plant peroxidases. Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=3.3e-97 Score=698.91 Aligned_cols=298 Identities=55% Similarity=0.958 Sum_probs=285.3
Q ss_pred CCCcccccCCCccHHHHHHHHHHHHHhcCccchhhHHHHhhhcccccCCCceeecCCCCCCCCCCccCCCCCCCCCccch
Q 039981 8 QLSSTFYATTCPNVSSIVRGVVEQARNNDARIGARLIRVHFHDCFVNGCDGSLLLDDSAPGGIQSEKNGNPNLSTGGYEV 87 (313)
Q Consensus 8 ~l~~~~Y~~~Cp~~e~~Vr~~v~~~~~~~~~~a~~~lRl~FHDc~~~GcDgSill~~~~~~~~~~E~~~~~N~~l~g~~~ 87 (313)
||+++||++|||++|+||+++|++.+..+++++|++|||+|||||++||||||||+.+ .++.+|+++++|.+++||++
T Consensus 1 ~L~~~~Y~~sCP~~e~iV~~~v~~~~~~~~~~a~~~lRl~FHDc~v~GcDaSill~~~--~~~~~E~~~~~N~~l~g~~~ 78 (298)
T cd00693 1 QLSVGFYSKSCPNAESIVRSVVRAAVKADPRLAAALLRLHFHDCFVRGCDASVLLDST--ANNTSEKDAPPNLSLRGFDV 78 (298)
T ss_pred CCCcccccCCCCChHHHHHHHHHHHHHhCCCcCchhhhhhhHhhhccCcceeEEecCC--CCCchhccCCCCCCcchhHH
Confidence 5999999999999999999999999999999999999999999999999999999876 56678999999998899999
Q ss_pred HHHHHHHHhhcCCCccchHHHHHHhhHhHhhhcCCCceEeeCCCCCCCCCCCcCCCCCCCCCCCHHHHHHHHHHCCCCCc
Q 039981 88 VDDIKTALENVCPGVVSCADILAIASQILVSLDGGPTWQVQLGRRDSRTANLAGTSGIPLGNETLDRISEKFRAVGLDDP 167 (313)
Q Consensus 88 i~~iK~~le~~cp~~VS~ADiialaa~~av~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~ 167 (313)
|+.||+++|+.||++|||||||+|||++||+++|||.|+|++||+|+.++.+..+..||.|+.+++++++.|+++||+++
T Consensus 79 i~~iK~~~e~~cp~~VScADiialAar~av~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F~~~G~~~~ 158 (298)
T cd00693 79 IDDIKAALEAACPGVVSCADILALAARDAVVLAGGPSYEVPLGRRDGRVSSANDVGNLPSPFFSVSQLISLFASKGLTVT 158 (298)
T ss_pred HHHHHHHHHhhCCCcccHHHHHHHhhhhceeccCCCcccccCCCcCCcccCcccccCCCCcccCHHHHHHHHHHcCCCHH
Confidence 99999999999999999999999999999999999999999999999877665434799999999999999999999999
Q ss_pred cchhhhccccccccccccccccccccCCCCCCCCCCCCHHHHHHHHhcCCCCCCCCCcccCCCCCCCCCChHHHHHHhcC
Q 039981 168 TDLVALSGAHTFGRARCVAFRNRLFNFDGAGNPDPTIDPTYLQTLRQNCPQGGNGNALVDLDPTTADGFDNNYFTNLQNN 247 (313)
Q Consensus 168 ~elVaL~GaHtiG~~hc~~f~~rl~~~~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~~d~~tp~~FDN~Yy~~l~~~ 247 (313)
|||||+||||||++||.+|.+|||+|+|.+.+||+|++.|+..|++.||....+.+.++||+.||.+|||+||++|+.+
T Consensus 159 -d~VaL~GaHTiG~~hc~~f~~Rl~~f~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDn~Yy~~l~~~ 237 (298)
T cd00693 159 -DLVALSGAHTIGRAHCSSFSDRLYNFSGTGDPDPTLDPAYAAQLRKKCPAGGDDDTLVPLDPGTPNTFDNSYYKNLLAG 237 (298)
T ss_pred -HheeecccceeeeeecccccccccCCCCCCCCCCCccHHHHHHhcCCCCCCCCCCccccCCCCCCCccccHHHHHHHhc
Confidence 9999999999999999999999999999989999999999999999999755455678999999999999999999999
Q ss_pred cccccchhhhhccCChhHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCCCCCCccccccccc
Q 039981 248 RGLLTSDQVLFSTTGAKTVAIVNRFANSQTDFFDTFGQAMIKMGNIRPLTGNNGEIRSNCRRI 310 (313)
Q Consensus 248 ~g~l~sD~~L~~~~d~~t~~~v~~yA~d~~~F~~~Fa~A~~Kms~lgv~tg~~GeiR~~C~~~ 310 (313)
+|+|+||+.|+. |++|+++|++||.||+.|+++|++||+||++|||+||.+||||++|+.+
T Consensus 238 ~glL~SD~~L~~--d~~t~~~V~~~A~d~~~F~~~Fa~Am~Kl~~l~v~tg~~GeiR~~C~~~ 298 (298)
T cd00693 238 RGLLTSDQALLS--DPRTRAIVNRYAANQDAFFRDFAAAMVKMGNIGVLTGSQGEIRKNCRVV 298 (298)
T ss_pred ccCccCCHHhcc--CccHHHHHHHHhhCHHHHHHHHHHHHHHHhhcCCccCCCCccCCccccC
Confidence 999999999999 9999999999999999999999999999999999999999999999975
No 3
>PF00141 peroxidase: Peroxidase; InterPro: IPR002016 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Most haem peroxidases follow the reaction scheme: Fe3+ + H2O2 --> [Fe4+=O]R' (Compound I) + H2O [Fe4+=O]R' + substrate --> [Fe4+=O]R (Compound II) + oxidised substrate [Fe4+=O]R + substrate --> Fe3+ + H2O + oxidised substrate In this mechanism, the enzyme reacts with one equivalent of H2O2 to give [Fe4+=O]R' (compound I). This is a two-electron oxidation/reduction reaction where H2O2 is reduced to water and the enzyme is oxidised. One oxidising equivalent resides on iron, giving the oxyferryl [] intermediate, while in many peroxidases the porphyrin (R) is oxidised to the porphyrin pi-cation radical (R'). Compound I then oxidises an organic substrate to give a substrate radical []. Haem peroxidases include two superfamilies: one found in bacteria, fungi, plants and the second found in animals. The first one can be viewed as consisting of 3 major classes []. Class I, the intracellular peroxidases, includes: yeast cytochrome c peroxidase (CCP), a soluble protein found in the mitochondrial electron transport chain, where it probably protects against toxic peroxides; ascorbate peroxidase (AP), the main enzyme responsible for hydrogen peroxide removal in chloroplasts and cytosol of higher plants; and bacterial catalase- peroxidases, exhibiting both peroxidase and catalase activities. It is thought that catalase-peroxidase provides protection to cells under oxidative stress []. Class II consists of secretory fungal peroxidases: ligninases, or lignin peroxidases (LiPs), and manganese-dependent peroxidases (MnPs). These are monomeric glycoproteins involved in the degradation of lignin. In MnP, Mn2+ serves as the reducing substrate []. Class II proteins contain four conserved disulphide bridges and two conserved calcium-binding sites. Class III consists of the secretory plant peroxidases, which have multiple tissue-specific functions: e.g., removal of hydrogen peroxide from chloroplasts and cytosol; oxidation of toxic compounds; biosynthesis of the cell wall; defence responses towards wounding; indole-3-acetic acid (IAA) catabolism; ethylene biosynthesis; and so on. Class III proteins are also monomeric glycoproteins, containing four conserved disulphide bridges and two calcium ions, although the placement of the disulphides differs from class II enzymes. The crystal structures of a number of these proteins show that they share the same architecture - two all-alpha domains between which the haem group is embedded. ; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1QPA_B 2DV2_A 2B2R_B 1MWV_B 2FXJ_A 2FXG_A 2B2O_B 1X7U_B 2B2Q_A 2FXH_A ....
Probab=100.00 E-value=1.2e-69 Score=495.61 Aligned_cols=228 Identities=49% Similarity=0.860 Sum_probs=208.0
Q ss_pred HHHHHHHHHhcCccchhhHHHHhhhcccc-cCCCceeecCCCCCCCCCCccCCCCCCCC-CccchHHHHHHHHhhcCCCc
Q 039981 25 VRGVVEQARNNDARIGARLIRVHFHDCFV-NGCDGSLLLDDSAPGGIQSEKNGNPNLST-GGYEVVDDIKTALENVCPGV 102 (313)
Q Consensus 25 Vr~~v~~~~~~~~~~a~~~lRl~FHDc~~-~GcDgSill~~~~~~~~~~E~~~~~N~~l-~g~~~i~~iK~~le~~cp~~ 102 (313)
||++|+++++.+++++|+||||+||||++ +|||||||+.. .|+++++|.+| +++++|+.||++++++||++
T Consensus 1 Vr~~v~~~~~~~~~~~~~~lRl~FHDc~~~~GcDgSil~~~-------~e~~~~~N~gl~~~~~~i~~ik~~~~~~cp~~ 73 (230)
T PF00141_consen 1 VRSDVRAAFKKDPTLAPGLLRLAFHDCFVYGGCDGSILLFS-------AEKDAPPNRGLRDGFDVIDPIKAKLEAACPGV 73 (230)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHTTHTSSSSGGGGST-------TGGGSGGGTTHHHHHHHHHHHHHHHCHHSTTT
T ss_pred CHHHHHHHHHHCcCccHHHHHHHccccccccccccceeccc-------cccccccccCcceeeechhhHHhhhcccccCC
Confidence 89999999999999999999999999999 99999999843 69999999999 59999999999999999999
Q ss_pred cchHHHHHHhhHhHhhhcCCCceEeeCCCCCCCCCCCcCCCCCCCCCCCHHHHHHHHHHCCCCCccchhhhccccccccc
Q 039981 103 VSCADILAIASQILVSLDGGPTWQVQLGRRDSRTANLAGTSGIPLGNETLDRISEKFRAVGLDDPTDLVALSGAHTFGRA 182 (313)
Q Consensus 103 VS~ADiialaa~~av~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~~elVaL~GaHtiG~~ 182 (313)
|||||||+|||++||+.+|||.|+|++||+|++++.+.++.+||.|+.++++|++.|+++||+++ |||||+||||||++
T Consensus 74 VS~ADiialAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~-e~VaLsGaHTiG~~ 152 (230)
T PF00141_consen 74 VSCADIIALAARDAVELCGGPRIPVPLGRRDGTVSSPSGASNLPSPTDSVDQLLAFFARKGLSAE-EMVALSGAHTIGRA 152 (230)
T ss_dssp S-HHHHHHHHHHHHHHHTTGGHSHBEB-EBB-SSGGHHHHHHSSTTTSHHHHHHHHHHHTT--HH-HHHHHHGGGGSTEE
T ss_pred CCHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccchhhhhhhccccchh-hhcceecccccccc
Confidence 99999999999999999999999999999999999986532489999999999999999999999 99999999999999
Q ss_pred cccccccccccCCCCCCCCCCCCHHHHHHHHhcCCCCCCCCCcccCCCCCCCCCChHHHHHHhcCcccccchhhhhccCC
Q 039981 183 RCVAFRNRLFNFDGAGNPDPTIDPTYLQTLRQNCPQGGNGNALVDLDPTTADGFDNNYFTNLQNNRGLLTSDQVLFSTTG 262 (313)
Q Consensus 183 hc~~f~~rl~~~~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~~d~~tp~~FDN~Yy~~l~~~~g~l~sD~~L~~~~d 262 (313)
||.+|. ||| + .+||+|++.|+.. .| ..++++ .+++| ||.+|||+||++|++++|+|.||++|+. |
T Consensus 153 ~c~~f~-rl~-~----~~dp~~d~~~~~~---~C-~~~~~~-~~~~d--tp~~fDN~Yy~~ll~~~gll~SD~~L~~--d 217 (230)
T PF00141_consen 153 HCSSFS-RLY-F----PPDPTMDPGYAGQ---NC-NSGGDN-GVPLD--TPTVFDNSYYKNLLNGRGLLPSDQALLN--D 217 (230)
T ss_dssp SGGCTG-GTS-C----SSGTTSTHHHHHH---SS-STSGCT-CEESS--STTS-SSHHHHHHHHTEEEEHHHHHHHH--S
T ss_pred eecccc-ccc-c----cccccccccccee---cc-CCCccc-ccccc--CCCcchhHHHHHHhcCCCcCHHHHHHhc--C
Confidence 999999 999 4 5799999999988 99 443333 77888 9999999999999999999999999999 9
Q ss_pred hhHHHHHHHHhcC
Q 039981 263 AKTVAIVNRFANS 275 (313)
Q Consensus 263 ~~t~~~v~~yA~d 275 (313)
++|+++|++||+|
T Consensus 218 ~~t~~~V~~yA~d 230 (230)
T PF00141_consen 218 PETRPIVERYAQD 230 (230)
T ss_dssp TTHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcC
Confidence 9999999999986
No 4
>PLN02608 L-ascorbate peroxidase
Probab=100.00 E-value=1.2e-67 Score=493.00 Aligned_cols=232 Identities=25% Similarity=0.417 Sum_probs=210.1
Q ss_pred HHHHHHHHHHHHhcCccchhhHHHHhhhccc-------ccCCCceeecCCCCCCCCCCccCCCCCCCC-CccchHHHHHH
Q 039981 22 SSIVRGVVEQARNNDARIGARLIRVHFHDCF-------VNGCDGSLLLDDSAPGGIQSEKNGNPNLST-GGYEVVDDIKT 93 (313)
Q Consensus 22 e~~Vr~~v~~~~~~~~~~a~~~lRl~FHDc~-------~~GcDgSill~~~~~~~~~~E~~~~~N~~l-~g~~~i~~iK~ 93 (313)
-+.+|++|.+ +.+++.++|.+|||+||||+ ++||||||++. +|+++++|.+| +++++|+.||+
T Consensus 14 ~~~~~~~~~~-~~~d~~~a~~llRLaFHDc~t~d~~~~~gGcDgSIll~--------~E~~~~~N~gL~~g~~vid~iK~ 84 (289)
T PLN02608 14 IEKARRDLRA-LIASKNCAPIMLRLAWHDAGTYDAKTKTGGPNGSIRNE--------EEYSHGANNGLKIAIDLCEPVKA 84 (289)
T ss_pred HHHHHHHHHH-HHHCCCcHHHHHHHhhhhcCCcCCCCCCCCCCeeeecc--------cccCCccccchHHHHHHHHHHHH
Confidence 3456666744 66789999999999999999 89999999984 59999999999 79999999999
Q ss_pred HHhhcCCCccchHHHHHHhhHhHhhhcCCCceEeeCCCCCCCCCCCcCCCCCCCCCCCHHHHHHHHHHCCCCCccchhhh
Q 039981 94 ALENVCPGVVSCADILAIASQILVSLDGGPTWQVQLGRRDSRTANLAGTSGIPLGNETLDRISEKFRAVGLDDPTDLVAL 173 (313)
Q Consensus 94 ~le~~cp~~VS~ADiialaa~~av~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~~elVaL 173 (313)
++ ++|||||||+||||+||+.+|||.|+|++||+|++++.+.+ +||.|+.+++++++.|+++||+++ |||||
T Consensus 85 ~~-----~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~~~--~LP~p~~~~~~l~~~F~~~Gl~~~-D~VaL 156 (289)
T PLN02608 85 KH-----PKITYADLYQLAGVVAVEVTGGPTIDFVPGRKDSNACPEEG--RLPDAKKGAKHLRDVFYRMGLSDK-DIVAL 156 (289)
T ss_pred Hc-----CCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCcCCccC--CCcCCCCCHHHHHHHHHHcCCCHH-HHhhh
Confidence 97 38999999999999999999999999999999999987655 899999999999999999999999 99999
Q ss_pred ccccccccccccccccccccCCCCCCCCCCCCHHHHHHHHhcCCCCCCCCCcccCCCCCCCCCChHHHHHHhcC--ccc-
Q 039981 174 SGAHTFGRARCVAFRNRLFNFDGAGNPDPTIDPTYLQTLRQNCPQGGNGNALVDLDPTTADGFDNNYFTNLQNN--RGL- 250 (313)
Q Consensus 174 ~GaHtiG~~hc~~f~~rl~~~~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~~d~~tp~~FDN~Yy~~l~~~--~g~- 250 (313)
+||||||++||. |+ +|.| +++ .||.+|||+||++|+.+ +|+
T Consensus 157 sGAHTiG~ahc~----r~-g~~g------------------------------~~~-~Tp~~FDN~Yy~~ll~~~~~gll 200 (289)
T PLN02608 157 SGGHTLGRAHPE----RS-GFDG------------------------------PWT-KEPLKFDNSYFVELLKGESEGLL 200 (289)
T ss_pred cccccccccccc----CC-CCCC------------------------------CCC-CCCCccChHHHHHHHcCCcCCcc
Confidence 999999999995 54 3322 012 68999999999999998 787
Q ss_pred -ccchhhhhccCChhHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCCCCCCccccccc
Q 039981 251 -LTSDQVLFSTTGAKTVAIVNRFANSQTDFFDTFGQAMIKMGNIRPLTGNNGEIRSNCR 308 (313)
Q Consensus 251 -l~sD~~L~~~~d~~t~~~v~~yA~d~~~F~~~Fa~A~~Kms~lgv~tg~~GeiR~~C~ 308 (313)
|+||+.|+. |++|+++|+.||.||++|+++|++||+||++|||+||.+||+.+.-+
T Consensus 201 ~L~SD~~L~~--d~~T~~~V~~fA~~~~~F~~~Fa~Am~Km~~lgvltg~~Ge~~~~~~ 257 (289)
T PLN02608 201 KLPTDKALLE--DPEFRPYVELYAKDEDAFFRDYAESHKKLSELGFTPPSSAFKKKSTS 257 (289)
T ss_pred ccccCHhhhc--ChhHHHHHHHHhhCHHHHHHHHHHHHHHHHcCCCCCCCCCcccccCc
Confidence 799999999 99999999999999999999999999999999999999999987543
No 5
>cd00691 ascorbate_peroxidase Ascorbate peroxidases and cytochrome C peroxidases. Ascorbate peroxidases are a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Along with related catalase-peroxidases, ascorbate peroxidases belong to class I of the plant superfamily. Ascorbate peroxidases are found in the chloroplasts and/or cytosol of algae and plants, where they have been shown to control the concentration of lethal hydrogen peroxide molecules. The yeast cytochrome c peroxidase is a divergent member of the family; it forms a complex with cytochrome c to catalyze the reduction of hydrogen peroxide to water.
Probab=100.00 E-value=3e-64 Score=464.99 Aligned_cols=232 Identities=25% Similarity=0.382 Sum_probs=207.9
Q ss_pred ccHHHHHHHHHHHHHhcCccchhhHHHHhhhcccccCCCceeecCCCC-CCCCCCccCCCCCCCC-CccchHHHHHHHHh
Q 039981 19 PNVSSIVRGVVEQARNNDARIGARLIRVHFHDCFVNGCDGSLLLDDSA-PGGIQSEKNGNPNLST-GGYEVVDDIKTALE 96 (313)
Q Consensus 19 p~~e~~Vr~~v~~~~~~~~~~a~~~lRl~FHDc~~~GcDgSill~~~~-~~~~~~E~~~~~N~~l-~g~~~i~~iK~~le 96 (313)
-..++|||++|++.++ ++.++|.+|||+|||||+ ||+|+++++.. ...+.+|+++++|.+| +++++|++||+++
T Consensus 10 ~~~~~~V~~~v~~~~~-~~~~~~~llRl~FHDc~~--~d~s~~~~G~d~s~~~~~E~~~~~N~~L~~~~~~i~~iK~~~- 85 (253)
T cd00691 10 AKDLEAARNDIAKLID-DKNCAPILVRLAWHDSGT--YDKETKTGGSNGTIRFDPELNHGANAGLDIARKLLEPIKKKY- 85 (253)
T ss_pred HHHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHhc--cccccCCCCCCccccchhhcCCccccchHHHHHHHHHHHHHc-
Confidence 3568899999999999 999999999999999994 77777665421 1334579999999999 9999999999987
Q ss_pred hcCCCccchHHHHHHhhHhHhhhcCCCceEeeCCCCCCCCCCCcCCC-CCCCCCCCHHHHHHHHHHCCCCCccchhhhcc
Q 039981 97 NVCPGVVSCADILAIASQILVSLDGGPTWQVQLGRRDSRTANLAGTS-GIPLGNETLDRISEKFRAVGLDDPTDLVALSG 175 (313)
Q Consensus 97 ~~cp~~VS~ADiialaa~~av~~~GGP~~~v~~GR~D~~~s~~~~~~-~lP~p~~~~~~l~~~F~~~Gl~~~~elVaL~G 175 (313)
| +|||||||+|||++||+.+|||.|+|++||+|+.++....+. +||.|+.++++++++|+++||+++ |||||+|
T Consensus 86 ---~-~VScADilalAar~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~-d~VaLsG 160 (253)
T cd00691 86 ---P-DISYADLWQLAGVVAIEEMGGPKIPFRPGRVDASDPEECPPEGRLPDASKGADHLRDVFYRMGFNDQ-EIVALSG 160 (253)
T ss_pred ---C-CCCHHHHHHHHHHHHHHHcCCCccCcccCCCCCCcccccCcccCCCCCCCCHHHHHHHHHhcCCCHH-HHHHhcc
Confidence 3 899999999999999999999999999999999999876666 899999999999999999999999 9999999
Q ss_pred ccccccccccccccccccCCCCCCCCCCCCHHHHHHHHhcCCCCCCCCCcccCCCCCCCCCChHHHHHHhcCcc------
Q 039981 176 AHTFGRARCVAFRNRLFNFDGAGNPDPTIDPTYLQTLRQNCPQGGNGNALVDLDPTTADGFDNNYFTNLQNNRG------ 249 (313)
Q Consensus 176 aHtiG~~hc~~f~~rl~~~~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~~d~~tp~~FDN~Yy~~l~~~~g------ 249 (313)
|||||++||.. ++|.|. + ..||.+|||+||++|+.++|
T Consensus 161 aHTiG~a~c~~-----~~~~g~-------------------------~------~~tp~~FDn~Yy~~ll~~~g~~~~~~ 204 (253)
T cd00691 161 AHTLGRCHKER-----SGYDGP-------------------------W------TKNPLKFDNSYFKELLEEDWKLPTPG 204 (253)
T ss_pred cceeecccccC-----CCCCCC-------------------------C------CCCCCcccHHHHHHHhcCCCccCcCc
Confidence 99999999953 233220 1 15899999999999999999
Q ss_pred --cccchhhhhccCChhHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCC
Q 039981 250 --LLTSDQVLFSTTGAKTVAIVNRFANSQTDFFDTFGQAMIKMGNIRPLT 297 (313)
Q Consensus 250 --~l~sD~~L~~~~d~~t~~~v~~yA~d~~~F~~~Fa~A~~Kms~lgv~t 297 (313)
+|+||+.|+. |++|+++|+.||.|+++|+++|++||+||++|||..
T Consensus 205 ~~~L~sD~~L~~--d~~t~~~v~~~a~~~~~F~~~Fa~Am~Km~~l~v~~ 252 (253)
T cd00691 205 LLMLPTDKALLE--DPKFRPYVELYAKDQDAFFKDYAEAHKKLSELGVPF 252 (253)
T ss_pred ceechhhHHHHc--CccHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCCCC
Confidence 9999999999 999999999999999999999999999999999863
No 6
>cd00692 ligninase Ligninase and other manganese-dependent fungal peroxidases. Ligninases and related extracellular fungal peroxidases belong to class II of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class II peroxidases are fungal glycoproteins that have been implicated in the oxidative breakdown of lignin, the main cell wall component of woody plants. They contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=1.6e-63 Score=472.88 Aligned_cols=237 Identities=26% Similarity=0.376 Sum_probs=213.2
Q ss_pred HHHHHHHHHHHHHhcCcc---chhhHHHHhhhcccc------------cCCCceeecCCCCCCCCCCccCCCCCCCCCcc
Q 039981 21 VSSIVRGVVEQARNNDAR---IGARLIRVHFHDCFV------------NGCDGSLLLDDSAPGGIQSEKNGNPNLSTGGY 85 (313)
Q Consensus 21 ~e~~Vr~~v~~~~~~~~~---~a~~~lRl~FHDc~~------------~GcDgSill~~~~~~~~~~E~~~~~N~~l~g~ 85 (313)
+|..|+++|++.+..+.. .|+.+|||+||||++ +|||||||++.+ .|+++++|.+|+
T Consensus 16 ~~~~v~~dl~~~~~~~~~c~~~a~~~lRL~FHD~~~~~~~~~~~~~~~gGcDgSill~~~------~E~~~~~N~gL~-- 87 (328)
T cd00692 16 VWFDILDDIQGNLFNGGECGEEAHESLRLTFHDAIGFSPALAAGQFGGGGADGSIVLFDD------IETAFHANIGLD-- 87 (328)
T ss_pred chHHHHHHHHHHHhcCCCCchHHHHhHHHhhhcccccccccccCCCCCCCcCceeecCCc------ccccCCCCCCHH--
Confidence 699999999999985544 577799999999996 799999999753 699999998765
Q ss_pred chHHHHHHHHhhcCCCccchHHHHHHhhHhHhhhc-CCCceEeeCCCCCCCCCCCcCCCCCCCCCCCHHHHHHHHHHCCC
Q 039981 86 EVVDDIKTALENVCPGVVSCADILAIASQILVSLD-GGPTWQVQLGRRDSRTANLAGTSGIPLGNETLDRISEKFRAVGL 164 (313)
Q Consensus 86 ~~i~~iK~~le~~cp~~VS~ADiialaa~~av~~~-GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F~~~Gl 164 (313)
++|+.||..+|+.| |||||||+|||++||+.+ |||.|+|++||+|++++.+.+ +||.|+.++++|++.|+++||
T Consensus 88 ~vvd~lk~~~e~~c---VScADiialAa~~AV~~~~GGP~i~v~~GR~D~~~s~~~g--~LP~p~~sv~~l~~~F~~~Gf 162 (328)
T cd00692 88 EIVEALRPFHQKHN---VSMADFIQFAGAVAVSNCPGAPRLEFYAGRKDATQPAPDG--LVPEPFDSVDKILARFADAGF 162 (328)
T ss_pred HHHHHHHHHHHhcC---cCHHHHHHHHHHHHHHhcCCCCcccccCCCCCCCCCCccc--CCCCCCCCHHHHHHHHHHcCC
Confidence 89999999999988 999999999999999965 999999999999999998777 899999999999999999999
Q ss_pred CCccchhhhccccccccccccccccccccCCCCCCCCCCCCHHHHHHHHhcCCCCCCCCCcccCCCCCCCCCChHHHHHH
Q 039981 165 DDPTDLVALSGAHTFGRARCVAFRNRLFNFDGAGNPDPTIDPTYLQTLRQNCPQGGNGNALVDLDPTTADGFDNNYFTNL 244 (313)
Q Consensus 165 ~~~~elVaL~GaHtiG~~hc~~f~~rl~~~~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~~d~~tp~~FDN~Yy~~l 244 (313)
+++ |||||+||||||++|. .||+++ ..++| .||.+|||+||+++
T Consensus 163 ~~~-E~VaLsGAHTiG~a~~---------------~Dps~~-------------------g~p~D-~TP~~FDn~Yf~~l 206 (328)
T cd00692 163 SPD-ELVALLAAHSVAAQDF---------------VDPSIA-------------------GTPFD-STPGVFDTQFFIET 206 (328)
T ss_pred CHH-HHhhhcccccccccCC---------------CCCCCC-------------------CCCCC-CCcchhcHHHHHHH
Confidence 999 9999999999999982 366654 14678 69999999999998
Q ss_pred h-cCcc-------------------cccchhhhhccCChhHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCCCCCCccc
Q 039981 245 Q-NNRG-------------------LLTSDQVLFSTTGAKTVAIVNRFANSQTDFFDTFGQAMIKMGNIRPLTGNNGEIR 304 (313)
Q Consensus 245 ~-~~~g-------------------~l~sD~~L~~~~d~~t~~~v~~yA~d~~~F~~~Fa~A~~Kms~lgv~tg~~GeiR 304 (313)
+ .+++ +|+||++|+. |++|+.+|++||+||++|+++|++||+||++|||. ....
T Consensus 207 l~~~~~~~g~~~~~~e~~~~~~g~~~L~SD~~L~~--D~~T~~~v~~fa~dq~~f~~~Fa~Am~KLs~lgv~----~~~l 280 (328)
T cd00692 207 LLKGTAFPGSGGNQGEVESPLPGEFRLQSDFLLAR--DPRTACEWQSFVNNQAKMNAAFAAAMLKLSLLGQD----NISL 280 (328)
T ss_pred HHcCCCCCCccccccccccCccccccccchHHHhc--CCcHHHHHHHHhcCHHHHHHHHHHHHHHHHcCCCC----cchh
Confidence 7 4544 4999999999 99999999999999999999999999999999987 3377
Q ss_pred ccccccCC
Q 039981 305 SNCRRINS 312 (313)
Q Consensus 305 ~~C~~~n~ 312 (313)
..|+.|++
T Consensus 281 ~dcs~v~p 288 (328)
T cd00692 281 TDCSDVIP 288 (328)
T ss_pred ccCcccCC
Confidence 79999986
No 7
>PLN02364 L-ascorbate peroxidase 1
Probab=100.00 E-value=1.4e-63 Score=459.16 Aligned_cols=230 Identities=27% Similarity=0.471 Sum_probs=206.8
Q ss_pred ccccC--CCccHHHHHHHHHHHHHhcCccchhhHHHHhhh-----ccccc--CCCceeecCCCCCCCCCCccCCCCCCCC
Q 039981 12 TFYAT--TCPNVSSIVRGVVEQARNNDARIGARLIRVHFH-----DCFVN--GCDGSLLLDDSAPGGIQSEKNGNPNLST 82 (313)
Q Consensus 12 ~~Y~~--~Cp~~e~~Vr~~v~~~~~~~~~~a~~~lRl~FH-----Dc~~~--GcDgSill~~~~~~~~~~E~~~~~N~~l 82 (313)
+||.. -|+.+++.+++.+++.+ .+++++|.||||+|| ||+++ ||||||.+ .+|+++++|.+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~lRl~FHd~~t~dc~~~~GG~dgSi~~--------~~E~~~~~N~gl 74 (250)
T PLN02364 4 NYPTVSEDYKKAVEKCRRKLRGLI-AEKNCAPIMVRLAWHSAGTFDCQSRTGGPFGTMRF--------DAEQAHGANSGI 74 (250)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHccccCcCcCCCCCCCCccccc--------cccccCCCccCH
Confidence 55643 47889999999999988 588999999999999 77766 99999854 369999999999
Q ss_pred -CccchHHHHHHHHhhcCCCccchHHHHHHhhHhHhhhcCCCceEeeCCCCCCCCCCCcCCCCCCCCCCCHHHHHHHHHH
Q 039981 83 -GGYEVVDDIKTALENVCPGVVSCADILAIASQILVSLDGGPTWQVQLGRRDSRTANLAGTSGIPLGNETLDRISEKFRA 161 (313)
Q Consensus 83 -~g~~~i~~iK~~le~~cp~~VS~ADiialaa~~av~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F~~ 161 (313)
++|++|+.||+++ ++|||||||+||||+||+++|||.|+|++||+|++++.+.+ .||.|+.++++|++.|++
T Consensus 75 ~~~~~~i~~ik~~~-----~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~~~--~lP~p~~~~~~l~~~F~~ 147 (250)
T PLN02364 75 HIALRLLDPIREQF-----PTISFADFHQLAGVVAVEVTGGPDIPFHPGREDKPQPPPEG--RLPDATKGCDHLRDVFAK 147 (250)
T ss_pred HHHHHHHHHHHHHc-----CCcCHHHHHHHHHHHHHHhcCCCeeCCCCCCCCcccccccC--CCCCCCcCHHHHHHHHHH
Confidence 9999999999998 48999999999999999999999999999999999988765 799999999999999997
Q ss_pred -CCCCCccchhhhccccccccccccccccccccCCCCCCCCCCCCHHHHHHHHhcCCCCCCCCCcccCCCCCCCCCChHH
Q 039981 162 -VGLDDPTDLVALSGAHTFGRARCVAFRNRLFNFDGAGNPDPTIDPTYLQTLRQNCPQGGNGNALVDLDPTTADGFDNNY 240 (313)
Q Consensus 162 -~Gl~~~~elVaL~GaHtiG~~hc~~f~~rl~~~~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~~d~~tp~~FDN~Y 240 (313)
+||+++ |||||+||||||++||. |+ +|.| . ++ .||.+|||+|
T Consensus 148 ~~Gl~~~-d~VaLsGaHTiG~~hc~----r~-~~~g-------------------------~-----~~-~tp~~fDn~Y 190 (250)
T PLN02364 148 QMGLSDK-DIVALSGAHTLGRCHKD----RS-GFEG-------------------------A-----WT-SNPLIFDNSY 190 (250)
T ss_pred hcCCCHH-HheeeecceeeccccCC----CC-CCCC-------------------------C-----CC-CCCCccchHH
Confidence 699999 99999999999999993 43 3322 1 12 6899999999
Q ss_pred HHHHhcC--ccccc--chhhhhccCChhHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCC
Q 039981 241 FTNLQNN--RGLLT--SDQVLFSTTGAKTVAIVNRFANSQTDFFDTFGQAMIKMGNIRPL 296 (313)
Q Consensus 241 y~~l~~~--~g~l~--sD~~L~~~~d~~t~~~v~~yA~d~~~F~~~Fa~A~~Kms~lgv~ 296 (313)
|++|+.+ +|+|. ||+.|+. |++|+.+|+.||.||++|+++|++||+||++||+-
T Consensus 191 y~~ll~~~~~gll~l~sD~~L~~--d~~T~~~v~~~a~~~~~F~~~Fa~Am~Km~~lg~~ 248 (250)
T PLN02364 191 FKELLSGEKEGLLQLVSDKALLD--DPVFRPLVEKYAADEDAFFADYAEAHMKLSELGFA 248 (250)
T ss_pred HHHHhcCCcCCCccccchHHHcc--CchHHHHHHHHhhCHHHHHHHHHHHHHHHHccCCC
Confidence 9999998 88865 9999999 99999999999999999999999999999999973
No 8
>PLN02879 L-ascorbate peroxidase
Probab=100.00 E-value=5.6e-63 Score=454.46 Aligned_cols=221 Identities=25% Similarity=0.448 Sum_probs=199.4
Q ss_pred HHHHHHHHHHHHHhcCccchhhHHHHhhhcccc-------cCCCceeecCCCCCCCCCCccCCCCCCCC-CccchHHHHH
Q 039981 21 VSSIVRGVVEQARNNDARIGARLIRVHFHDCFV-------NGCDGSLLLDDSAPGGIQSEKNGNPNLST-GGYEVVDDIK 92 (313)
Q Consensus 21 ~e~~Vr~~v~~~~~~~~~~a~~~lRl~FHDc~~-------~GcDgSill~~~~~~~~~~E~~~~~N~~l-~g~~~i~~iK 92 (313)
..+-+++.|.+.+. +..++|.+|||+||||++ +||||||++. .|+++++|.+| .++++|++||
T Consensus 16 ~~~~~~~~~~~~~~-~~~~~p~~vRla~Hdagt~~~~~~~GG~~Gsirf~--------~E~~~~~N~gL~~~~~~i~~iK 86 (251)
T PLN02879 16 AVQRCKRKLRGLIA-EKHCAPIVLRLAWHSAGTFDVKTKTGGPFGTIRHP--------QELAHDANNGLDIAVRLLDPIK 86 (251)
T ss_pred HHHHHHHHHHHHHh-CCCchhHhHHHHHhhhccccCCCCCCCCCeeecCh--------hhccCCCcCChHHHHHHHHHHH
Confidence 34456888888775 579999999999999974 7999999763 59999999999 6999999999
Q ss_pred HHHhhcCCCccchHHHHHHhhHhHhhhcCCCceEeeCCCCCCCCCCCcCCCCCCCCCCCHHHHHHHHHHCCCCCccchhh
Q 039981 93 TALENVCPGVVSCADILAIASQILVSLDGGPTWQVQLGRRDSRTANLAGTSGIPLGNETLDRISEKFRAVGLDDPTDLVA 172 (313)
Q Consensus 93 ~~le~~cp~~VS~ADiialaa~~av~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~~elVa 172 (313)
+++ ++|||||||+|||++||+.+|||.|+|++||+|+.++.+.+ +||.|+.++++|++.|+++||+++ ||||
T Consensus 87 ~~~-----~~VScADilalAa~~AV~~~GGP~~~~~~GR~D~~~~~~~~--~lP~p~~~~~~l~~~F~~~Gl~~~-dlVA 158 (251)
T PLN02879 87 ELF-----PILSYADFYQLAGVVAVEITGGPEIPFHPGRLDKVEPPPEG--RLPQATKGVDHLRDVFGRMGLNDK-DIVA 158 (251)
T ss_pred HHc-----CCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCCCCccc--CCCCCCCCHHHHHHHHHHcCCCHH-HHee
Confidence 998 48999999999999999999999999999999999987766 899999999999999999999999 9999
Q ss_pred hccccccccccccccccccccCCCCCCCCCCCCHHHHHHHHhcCCCCCCCCCcccCCCCCCCCCChHHHHHHhcC--ccc
Q 039981 173 LSGAHTFGRARCVAFRNRLFNFDGAGNPDPTIDPTYLQTLRQNCPQGGNGNALVDLDPTTADGFDNNYFTNLQNN--RGL 250 (313)
Q Consensus 173 L~GaHtiG~~hc~~f~~rl~~~~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~~d~~tp~~FDN~Yy~~l~~~--~g~ 250 (313)
|+||||||++||. | ++|.| . +| .||.+|||+||++|+.+ +|+
T Consensus 159 LsGaHTiG~ah~~----r-~g~~g-------------------------~-----~d-~tp~~FDN~Yy~~ll~~~~~gl 202 (251)
T PLN02879 159 LSGGHTLGRCHKE----R-SGFEG-------------------------A-----WT-PNPLIFDNSYFKEILSGEKEGL 202 (251)
T ss_pred eeccccccccccc----c-ccCCC-------------------------C-----CC-CCccceeHHHHHHHHcCCcCCC
Confidence 9999999999995 3 33322 1 33 68999999999999998 787
Q ss_pred --ccchhhhhccCChhHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCC
Q 039981 251 --LTSDQVLFSTTGAKTVAIVNRFANSQTDFFDTFGQAMIKMGNIRPL 296 (313)
Q Consensus 251 --l~sD~~L~~~~d~~t~~~v~~yA~d~~~F~~~Fa~A~~Kms~lgv~ 296 (313)
|+||++|+. |++|+++|++||.||++|+++|++||+||++||+.
T Consensus 203 l~L~SD~aL~~--D~~t~~~V~~~A~d~~~F~~~Fa~Am~KL~~lg~~ 248 (251)
T PLN02879 203 LQLPTDKALLD--DPLFLPFVEKYAADEDAFFEDYTEAHLKLSELGFA 248 (251)
T ss_pred ccchhhHHHhc--CCcHHHHHHHHhhCHHHHHHHHHHHHHHHHccCCC
Confidence 679999999 99999999999999999999999999999999975
No 9
>cd00314 plant_peroxidase_like Heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX), which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions. Several sub-families can be identified. Class I includes intracellular peroxidases present in fungi, plants, archaea and bacteria, called catalase-peroxidases, that can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. Catalase-peroxidases are typically comprised of two homologous domains that probably arose via a single gene duplication event. Class II includes ligninase and other extracellular fungal peroxidases, while class III is comprised
Probab=100.00 E-value=6.7e-58 Score=423.83 Aligned_cols=220 Identities=34% Similarity=0.534 Sum_probs=203.1
Q ss_pred HHHHHHHHHHhcCccchhhHHHHhhhccccc--------CCCceeecCCCCCCCCCCccCCCCCCCC-CccchHHHHHHH
Q 039981 24 IVRGVVEQARNNDARIGARLIRVHFHDCFVN--------GCDGSLLLDDSAPGGIQSEKNGNPNLST-GGYEVVDDIKTA 94 (313)
Q Consensus 24 ~Vr~~v~~~~~~~~~~a~~~lRl~FHDc~~~--------GcDgSill~~~~~~~~~~E~~~~~N~~l-~g~~~i~~iK~~ 94 (313)
.|++.|++.+.+++.+++.+|||+||||+++ ||||||+++ +|+++++|.+| +++++|+.||.+
T Consensus 2 ~v~~~l~~~~~~~~~~~~~llRl~fHD~~~~~~~~~~~gg~dgsi~~~--------~e~~~~~N~~l~~~~~~l~~ik~~ 73 (255)
T cd00314 2 AIKAILEDLITQAGALAGSLLRLAFHDAGTYDIADGKGGGADGSIRFE--------PELDRPENGGLDKALRALEPIKSA 73 (255)
T ss_pred hHHHHHHHHHHhCcchHHHHHHHHHHHhccccccCCCCCCCCceEecc--------ccccCcccccHHHHHHHHHHHHHH
Confidence 5889999999999999999999999999996 999999996 39999999998 999999999999
Q ss_pred HhhcCCCccchHHHHHHhhHhHhhhc--CCCceEeeCCCCCCCCC-----CCcCCCCCCCCCCCHHHHHHHHHHCCCCCc
Q 039981 95 LENVCPGVVSCADILAIASQILVSLD--GGPTWQVQLGRRDSRTA-----NLAGTSGIPLGNETLDRISEKFRAVGLDDP 167 (313)
Q Consensus 95 le~~cp~~VS~ADiialaa~~av~~~--GGP~~~v~~GR~D~~~s-----~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~ 167 (313)
++. |++|||||||+||+++||+.+ |||.|+|++||+|++.+ .|.+ .+|.|+.+++++++.|.++||+++
T Consensus 74 ~~~--~~~vS~ADlialAa~~Av~~~~~ggp~~~~~~GR~D~~~~~~~~p~P~~--~~p~~~~~~~~~~~~F~~~Gl~~~ 149 (255)
T cd00314 74 YDG--GNPVSRADLIALAGAVAVESTFGGGPLIPFRFGRLDATEPDLGVPDPEG--LLPNETSSATELRDKFKRMGLSPS 149 (255)
T ss_pred cCC--CCcccHHHHHHHHHHHHHHHhccCCCeeeeCCCCCCCchhhccCCCCCC--CCCCccchHHHHHHHHHHcCCCHH
Confidence 998 889999999999999999999 99999999999999955 3333 788899999999999999999999
Q ss_pred cchhhhc-ccccc-ccccccccccccccCCCCCCCCCCCCHHHHHHHHhcCCCCCCCCCcccCCCCCCCCCChHHHHHHh
Q 039981 168 TDLVALS-GAHTF-GRARCVAFRNRLFNFDGAGNPDPTIDPTYLQTLRQNCPQGGNGNALVDLDPTTADGFDNNYFTNLQ 245 (313)
Q Consensus 168 ~elVaL~-GaHti-G~~hc~~f~~rl~~~~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~~d~~tp~~FDN~Yy~~l~ 245 (313)
|||||+ ||||| |++||..+..|+ |+ ++..||.+|||+||++|+
T Consensus 150 -e~VAL~~GaHti~G~~~~~~~~~~~------------------------~~----------~~~~tp~~fDN~yy~~l~ 194 (255)
T cd00314 150 -ELVALSAGAHTLGGKNHGDLLNYEG------------------------SG----------LWTSTPFTFDNAYFKNLL 194 (255)
T ss_pred -HHHhhccCCeeccCcccCCCCCccc------------------------CC----------CCCCCCCccchHHHHHHh
Confidence 999999 99999 999998776654 11 233799999999999999
Q ss_pred cCc----------------ccccchhhhhccCChhHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Q 039981 246 NNR----------------GLLTSDQVLFSTTGAKTVAIVNRFANSQTDFFDTFGQAMIKMGN 292 (313)
Q Consensus 246 ~~~----------------g~l~sD~~L~~~~d~~t~~~v~~yA~d~~~F~~~Fa~A~~Kms~ 292 (313)
.++ ++|+||+.|+. |++|+.+|++||.|+++|+++|++||.||++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~l~sD~~L~~--d~~t~~~v~~ya~~~~~f~~~Fa~a~~Km~~ 255 (255)
T cd00314 195 DMNWEWRVGSPDPDGVKGPGLLPSDYALLS--DSETRALVERYASDQEKFFEDFAKAWIKMVN 255 (255)
T ss_pred cCCcccccCCccCCCcccCCCchhhHHHhc--CHhHHHHHHHHHhCHHHHHHHHHHHHHHHcC
Confidence 988 89999999999 9999999999999999999999999999974
No 10
>cd00649 catalase_peroxidase_1 N-terminal catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms, where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to class I of the plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C
Probab=100.00 E-value=1.5e-57 Score=438.46 Aligned_cols=258 Identities=24% Similarity=0.352 Sum_probs=228.4
Q ss_pred HHHHHHHHHHHHhcC--------ccchhhHHHHhhhcccc-------cCCC-ceeecCCCCCCCCCCccCCCCCCCC-Cc
Q 039981 22 SSIVRGVVEQARNND--------ARIGARLIRVHFHDCFV-------NGCD-GSLLLDDSAPGGIQSEKNGNPNLST-GG 84 (313)
Q Consensus 22 e~~Vr~~v~~~~~~~--------~~~a~~~lRl~FHDc~~-------~GcD-gSill~~~~~~~~~~E~~~~~N~~l-~g 84 (313)
.+.||++|++.+... .+++|.+|||+||++.+ ||++ |+|.+. +|++++.|.+| ++
T Consensus 44 ~~~~~~di~~ll~~s~~~wp~D~g~~gp~lvRlAWh~AgTy~~~d~~GG~ngg~iRf~--------pe~~~~~N~gL~~a 115 (409)
T cd00649 44 LEALKEDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIADGRGGAGTGQQRFA--------PLNSWPDNVNLDKA 115 (409)
T ss_pred HHHHHHHHHHHHhcccccCccccCCcccceeeeeccccccccCcCCCCCCCCCccccc--------cccCcHhhhhHHHH
Confidence 478999999999864 37999999999999986 6886 787664 69999999999 89
Q ss_pred cchHHHHHHHHhhcCCCccchHHHHHHhhHhHhhhcCCCceEeeCCCCCCCCCC--------------------------
Q 039981 85 YEVVDDIKTALENVCPGVVSCADILAIASQILVSLDGGPTWQVQLGRRDSRTAN-------------------------- 138 (313)
Q Consensus 85 ~~~i~~iK~~le~~cp~~VS~ADiialaa~~av~~~GGP~~~v~~GR~D~~~s~-------------------------- 138 (313)
+.+|++||+++. ..||+||+|+||+.+|||.+|||.|++.+||.|+..+.
T Consensus 116 ~~~L~pik~k~~----~~iS~ADL~~LaG~~AiE~~Ggp~ipf~~GR~Da~~~~~~v~wg~~~~~~~~~~~~~~~~l~~p 191 (409)
T cd00649 116 RRLLWPIKQKYG----NKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGPEKEWLADKRYSGDRDLENP 191 (409)
T ss_pred HHHHHHHHHHcC----CCccHHHHHHHHHHHHHHHcCCCcccccCCCCccCCCccccccCcchhcccccccccchhhccc
Confidence 999999999984 47999999999999999999999999999999997643
Q ss_pred ------------CcCCCCCCCCCCCHHHHHHHHHHCCCCCccchhhh-ccccccccccccccccccccCCCCCCCCCCCC
Q 039981 139 ------------LAGTSGIPLGNETLDRISEKFRAVGLDDPTDLVAL-SGAHTFGRARCVAFRNRLFNFDGAGNPDPTID 205 (313)
Q Consensus 139 ------------~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~~elVaL-~GaHtiG~~hc~~f~~rl~~~~g~~~~dp~~~ 205 (313)
++++..||.|..++.+|++.|.+||||++ ||||| +||||||++||..|.+||. +||.++
T Consensus 192 l~a~~mgliyv~Pegp~gLPdP~~sa~~LR~~F~RmGlnd~-E~VAL~sGAHTiGkaHc~~~~~rlg-------~dP~~~ 263 (409)
T cd00649 192 LAAVQMGLIYVNPEGPDGNPDPLAAAKDIRETFARMAMNDE-ETVALIAGGHTFGKTHGAGPASHVG-------PEPEAA 263 (409)
T ss_pred hhhhhccccccCCCCCCCCCCCccCHHHHHHHHHHcCCCHH-HHeeeccCCcceeecCcccccccCC-------CCCCcC
Confidence 23333689999999999999999999999 99999 5999999999999999982 699999
Q ss_pred HHHHHHHH--hcCCCCCC-CCCcccCC---CCCCCCCChHHHHHHhc---------------------------------
Q 039981 206 PTYLQTLR--QNCPQGGN-GNALVDLD---PTTADGFDNNYFTNLQN--------------------------------- 246 (313)
Q Consensus 206 ~~~~~~L~--~~Cp~~~~-~~~~~~~d---~~tp~~FDN~Yy~~l~~--------------------------------- 246 (313)
+.|++.|+ ..||...+ +.....+| ..||++|||+||++|+.
T Consensus 264 ~~~~~gLgw~~~Cp~g~g~~t~~sglDG~Wt~tP~~FDN~YF~nLl~~eW~~~~~p~g~~Q~~~~~~~~~~~~~d~~~~~ 343 (409)
T cd00649 264 PIEQQGLGWKNSYGTGKGKDTITSGLEGAWTPTPTKWDNNYLKNLFGYEWELTKSPAGAWQWVPKNAAGENTVPDAHDPS 343 (409)
T ss_pred HHHHHhhcccccCCCCCCCCCccccCCCCCCCCcchhhHHHHHHHHhccceeccCCCCcccccccCccccccCCCccccc
Confidence 99999995 89996433 23355788 47999999999999998
Q ss_pred ---CcccccchhhhhccCChhHHHHHHHHhcCHHHHHHHHHHHHHHh--hcCCCCCCCCC
Q 039981 247 ---NRGLLTSDQVLFSTTGAKTVAIVNRFANSQTDFFDTFGQAMIKM--GNIRPLTGNNG 301 (313)
Q Consensus 247 ---~~g~l~sD~~L~~~~d~~t~~~v~~yA~d~~~F~~~Fa~A~~Km--s~lgv~tg~~G 301 (313)
+.+||+||++|+. |++++++|++||+||++|+++|++||.|| ..+|+++.-.|
T Consensus 344 ~~~~~gmL~SD~aL~~--Dp~tr~iV~~yA~d~~~Ff~dFA~A~~KL~hrdmgp~~~~~g 401 (409)
T cd00649 344 KKHAPMMLTTDLALRF--DPEYEKISRRFLENPDEFADAFAKAWFKLTHRDMGPKSRYLG 401 (409)
T ss_pred cccCcccchhhHhhhc--CccHHHHHHHHhcCHHHHHHHHHHHHHHHccccCCchhhhcC
Confidence 4589999999999 99999999999999999999999999999 58899886555
No 11
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=1.8e-54 Score=440.96 Aligned_cols=256 Identities=23% Similarity=0.310 Sum_probs=223.9
Q ss_pred HHHHHHHHHHHHhcC--------ccchhhHHHHhhhcccc-------cCC-CceeecCCCCCCCCCCccCCCCCCCC-Cc
Q 039981 22 SSIVRGVVEQARNND--------ARIGARLIRVHFHDCFV-------NGC-DGSLLLDDSAPGGIQSEKNGNPNLST-GG 84 (313)
Q Consensus 22 e~~Vr~~v~~~~~~~--------~~~a~~~lRl~FHDc~~-------~Gc-DgSill~~~~~~~~~~E~~~~~N~~l-~g 84 (313)
.+.||++|++.+... ..++|.+|||+||++.| ||| .|+|.+ .+|++|+.|.+| ++
T Consensus 54 ~~a~~~dl~~l~~~s~~wwpad~g~ygp~~vRlAWHsAgTYr~~d~rGGa~gg~iRf--------~P~~sw~~N~~Ldka 125 (716)
T TIGR00198 54 LAAVKQDLKHLMTDSQSWWPADWGHYGGLFIRMAWHAAGTYRIADGRGGAATGNQRF--------APLNSWPDNVNLDKA 125 (716)
T ss_pred HHHHHHHHHHHHhcCcccCccccCCcceeeeeeeccccccccCCCCCCCCCCCceec--------ccccCchhhhhHHHH
Confidence 457999999999864 37999999999999986 577 477665 479999999999 89
Q ss_pred cchHHHHHHHHhhcCCCccchHHHHHHhhHhHhhhcCCCceEeeCCCCCCCCCC--------------------------
Q 039981 85 YEVVDDIKTALENVCPGVVSCADILAIASQILVSLDGGPTWQVQLGRRDSRTAN-------------------------- 138 (313)
Q Consensus 85 ~~~i~~iK~~le~~cp~~VS~ADiialaa~~av~~~GGP~~~v~~GR~D~~~s~-------------------------- 138 (313)
+.+|++||++ ||+.|||||||+|||++|||.+|||.|+|.+||+|+..+.
T Consensus 126 ~~lL~pIk~k----yp~~VS~ADLivLAG~vAVE~~Ggp~i~f~~GR~D~~~~~~d~~~g~e~~~l~~~~~~~~~l~~p~ 201 (716)
T TIGR00198 126 RRLLWPIKKK----YGNKLSWADLIILAGTVAYESMGLKVFGFAGGREDIWEPDKDIYWGAEKEWLTSSREDRESLENPL 201 (716)
T ss_pred HHHHHHHHHH----CCCceeHHHHHHHHHHHHHHHhCCCccCCCCCCCCCCCcccccccccccchhhccccccccccccc
Confidence 9999999986 5789999999999999999999999999999999995432
Q ss_pred -----------CcCCCCCCCCCCCHHHHHHHHHHCCCCCccchhhhc-cccccccccccccccccccCCCCCCCCCCCCH
Q 039981 139 -----------LAGTSGIPLGNETLDRISEKFRAVGLDDPTDLVALS-GAHTFGRARCVAFRNRLFNFDGAGNPDPTIDP 206 (313)
Q Consensus 139 -----------~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~~elVaL~-GaHtiG~~hc~~f~~rl~~~~g~~~~dp~~~~ 206 (313)
++++..+|.|..+.++|++.|++||||++ |||||+ ||||||++||.+|.+|| ++||++++
T Consensus 202 a~~~~Gliyvnpeg~~~lPdP~~sa~~Lrd~F~rmGLnd~-EmVALiaGaHTiGkaHc~s~~~rl-------g~dP~~~~ 273 (716)
T TIGR00198 202 AATEMGLIYVNPEGPDGHPDPLCTAQDIRTTFARMGMNDE-ETVALIAGGHTVGKCHGAGPAELI-------GPDPEGAP 273 (716)
T ss_pred hhhhccccccCcccccCCCCCCCCHHHHHHHHHHcCCChH-HHeeeecCceeccccCCCcccccC-------CCCCCcCH
Confidence 12322699999999999999999999999 999996 99999999999999998 27999999
Q ss_pred HHHHHHHhcCCCCC---CCCCcccCC---CCCCCCCChHHHHHHhcC---------------------------------
Q 039981 207 TYLQTLRQNCPQGG---NGNALVDLD---PTTADGFDNNYFTNLQNN--------------------------------- 247 (313)
Q Consensus 207 ~~~~~L~~~Cp~~~---~~~~~~~~d---~~tp~~FDN~Yy~~l~~~--------------------------------- 247 (313)
.|++.|+++||... .+...+.+| ..||++|||+||++|+..
T Consensus 274 ~~~~gLg~~c~~~~g~g~dt~~sglDG~wT~TP~~FDN~YF~nLl~~~w~~~~s~~g~~q~~~~~~~~~~p~~~~~~~~~ 353 (716)
T TIGR00198 274 IEEQGLGWHNQYGKGVGRDTMTSGLEVAWTTTPTQWDNGYFYMLFNYEWELKKSPAGAWQWEAVDAPEIIPDVEDPNKKH 353 (716)
T ss_pred HHHHHhcccCCCCCCCCCCcccccCCCCCCCCCCccchHHHHHHhcCCceeeecCCCCceeeeccccccccccccccccc
Confidence 99999999998642 222346777 479999999999999974
Q ss_pred -cccccchhhhhccCChhHHHHHHHHhcCHHHHHHHHHHHHHHhh--cCCCCCCC
Q 039981 248 -RGLLTSDQVLFSTTGAKTVAIVNRFANSQTDFFDTFGQAMIKMG--NIRPLTGN 299 (313)
Q Consensus 248 -~g~l~sD~~L~~~~d~~t~~~v~~yA~d~~~F~~~Fa~A~~Kms--~lgv~tg~ 299 (313)
.++|.||++|.. |++++++|++||.|+++|+++|++||.||+ .+|++..-
T Consensus 354 ~~~mL~SDlaL~~--Dp~~r~iVe~yA~d~~~F~~dFA~Aw~KL~~~d~gp~~~y 406 (716)
T TIGR00198 354 NPIMLDADLALRF--DPEFRKISRRFLREPDYFAEAFAKAWFKLTHRDMGPKSRY 406 (716)
T ss_pred ccCccchhHHhcc--CccHHHHHHHHhcCHHHHHHHHHHHHHHHcccccCchhhh
Confidence 689999999999 999999999999999999999999999999 46766543
No 12
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=5.9e-52 Score=420.36 Aligned_cols=258 Identities=24% Similarity=0.355 Sum_probs=224.6
Q ss_pred HHHHHHHHHHHHhcC--------ccchhhHHHHhhhcccc-------cCCC-ceeecCCCCCCCCCCccCCCCCCCC-Cc
Q 039981 22 SSIVRGVVEQARNND--------ARIGARLIRVHFHDCFV-------NGCD-GSLLLDDSAPGGIQSEKNGNPNLST-GG 84 (313)
Q Consensus 22 e~~Vr~~v~~~~~~~--------~~~a~~~lRl~FHDc~~-------~GcD-gSill~~~~~~~~~~E~~~~~N~~l-~g 84 (313)
.+.||++|.+.+... ..++|.+|||+||++.+ |||+ |+|++ .+|++++.|.+| ++
T Consensus 56 ~~a~k~di~~l~~~sqdwwpaD~g~ygp~~vRlAWH~AgTYr~~d~rGGangg~iRf--------~pe~~w~~N~gL~ka 127 (726)
T PRK15061 56 LEALKKDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIGDGRGGAGGGQQRF--------APLNSWPDNVNLDKA 127 (726)
T ss_pred HHHHHHHHHHHHhcccccccccCCCccceeeeeeecccccccCcCCCCCCCCCcccC--------cccccchhhhhHHHH
Confidence 567999999999864 37999999999999986 6885 67655 479999999999 99
Q ss_pred cchHHHHHHHHhhcCCCccchHHHHHHhhHhHhhhcCCCceEeeCCCCCCCCCCC-------------------------
Q 039981 85 YEVVDDIKTALENVCPGVVSCADILAIASQILVSLDGGPTWQVQLGRRDSRTANL------------------------- 139 (313)
Q Consensus 85 ~~~i~~iK~~le~~cp~~VS~ADiialaa~~av~~~GGP~~~v~~GR~D~~~s~~------------------------- 139 (313)
+.+|++||+++. ..||+||+|+||+.+|||.+|||.|++.+||.|...+..
T Consensus 128 ~~~L~pik~ky~----~~iS~ADLi~LaG~vAiE~~Ggp~i~f~~GR~D~~~~~~~v~wg~e~~~l~~~~r~~~~~~l~~ 203 (726)
T PRK15061 128 RRLLWPIKQKYG----NKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPEEDVYWGPEKEWLGGDERYSGERDLEN 203 (726)
T ss_pred HHHHHHHHHHhC----CCccHHHHHHHHHHHHHHHcCCCccCcCCCCCCCcCCccccccCcccccccccccccccccccc
Confidence 999999999984 479999999999999999999999999999999875432
Q ss_pred --------------cCCCCCCCCCCCHHHHHHHHHHCCCCCccchhhhc-cccccccccccccccccccCCCCCCCCCCC
Q 039981 140 --------------AGTSGIPLGNETLDRISEKFRAVGLDDPTDLVALS-GAHTFGRARCVAFRNRLFNFDGAGNPDPTI 204 (313)
Q Consensus 140 --------------~~~~~lP~p~~~~~~l~~~F~~~Gl~~~~elVaL~-GaHtiG~~hc~~f~~rl~~~~g~~~~dp~~ 204 (313)
+++..+|+|..++.+|++.|.+||||++ |||||+ ||||||++||..|..|| ++||.+
T Consensus 204 pl~a~~mgliyvnpegp~glPdP~~sa~~lR~tF~RMGmnDe-EtVALiaGgHT~GkaHca~~~~rl-------gpdP~~ 275 (726)
T PRK15061 204 PLAAVQMGLIYVNPEGPNGNPDPLAAARDIRETFARMAMNDE-ETVALIAGGHTFGKTHGAGDASHV-------GPEPEA 275 (726)
T ss_pred chhhhhccceecCCCCCCCCCCcccCHHHHHHHHHHcCCCHH-HheeeccCCceeeeCCCcCccccc-------CCCCCc
Confidence 1222479999999999999999999999 999995 99999999999999997 269999
Q ss_pred CHHHHHHHH--hcCCCCCC-CCCcccCC---CCCCCCCChHHHHHHhcC-------------------------------
Q 039981 205 DPTYLQTLR--QNCPQGGN-GNALVDLD---PTTADGFDNNYFTNLQNN------------------------------- 247 (313)
Q Consensus 205 ~~~~~~~L~--~~Cp~~~~-~~~~~~~d---~~tp~~FDN~Yy~~l~~~------------------------------- 247 (313)
++.+++.|. +.||...+ +.....+| ..||++|||+||++|+..
T Consensus 276 a~~~~qgLgw~~~c~~g~g~dt~tsGldG~Wt~tPt~fDN~YF~nLl~~~W~~~~sp~G~~qw~~~~~~~~~~~pd~~~~ 355 (726)
T PRK15061 276 APIEEQGLGWKNSYGSGKGADTITSGLEGAWTTTPTQWDNGYFENLFGYEWELTKSPAGAWQWVPKDGAAEDTVPDAHDP 355 (726)
T ss_pred CHHHHHhccccccCCCCCCCCCccccCCCCCCCCcchhhHHHHHHHhhCcceeccCCCccccccccCccccccCCccccc
Confidence 999999985 89996432 33355688 479999999999999974
Q ss_pred -----cccccchhhhhccCChhHHHHHHHHhcCHHHHHHHHHHHHHHhhc--CCCCCCCCC
Q 039981 248 -----RGLLTSDQVLFSTTGAKTVAIVNRFANSQTDFFDTFGQAMIKMGN--IRPLTGNNG 301 (313)
Q Consensus 248 -----~g~l~sD~~L~~~~d~~t~~~v~~yA~d~~~F~~~Fa~A~~Kms~--lgv~tg~~G 301 (313)
.+||.||++|.. ||+++++|++||+||++|+++|++||.||++ +|+++.-.|
T Consensus 356 ~~~~~~~MLtSD~AL~~--DP~~r~iV~~fA~d~~~F~~~FA~A~~KL~hrdmgp~~ry~g 414 (726)
T PRK15061 356 SKKHAPTMLTTDLALRF--DPEYEKISRRFLENPEEFADAFARAWFKLTHRDMGPKSRYLG 414 (726)
T ss_pred ccccCcccccccHHhhc--CCcHHHHHHHHhcCHHHHHHHHHHHHHHHcccCCCchhhhcC
Confidence 589999999999 9999999999999999999999999999955 677664333
No 13
>cd08201 plant_peroxidase_like_1 Uncharacterized family of plant peroxidase-like proteins. This is a subgroup of heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX) which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions.
Probab=100.00 E-value=1e-48 Score=359.77 Aligned_cols=210 Identities=25% Similarity=0.348 Sum_probs=173.8
Q ss_pred hcCccchhhHHHHhhhccc-------ccCCCceeecCCCCCCCCCCccC-CCCCCCCCccchHHHHHHHHhhcCCCccch
Q 039981 34 NNDARIGARLIRVHFHDCF-------VNGCDGSLLLDDSAPGGIQSEKN-GNPNLSTGGYEVVDDIKTALENVCPGVVSC 105 (313)
Q Consensus 34 ~~~~~~a~~~lRl~FHDc~-------~~GcDgSill~~~~~~~~~~E~~-~~~N~~l~g~~~i~~iK~~le~~cp~~VS~ 105 (313)
..++.+++.||||+||||+ ++||||||+++.. .+|+. ...|..+++|+.|+.+ +|||
T Consensus 36 ~~~~~~aa~~LRL~FHDc~t~~~~~g~gGcDgSIlle~~-----~~En~G~~~n~~l~~~~~i~~~----------~VSc 100 (264)
T cd08201 36 GPGRQAAAEWLRTAFHDMATHNVDDGTGGLDASIQYELD-----RPENIGSGFNTTLNFFVNFYSP----------RSSM 100 (264)
T ss_pred CCCccHHHHHHHHHHHhhcCcccCCCCCCCCcceeecCC-----ChhhccCchhhccccceeeccC----------ccCH
Confidence 3678899999999999999 7899999999742 46776 4445555777776543 6999
Q ss_pred HHHHHHhhHhHhhhcCCCceEeeCCCCCCCCCCCcCCCCCCCCCCCHHHHHHHHHHCCCCCccchhhhcc-ccccccccc
Q 039981 106 ADILAIASQILVSLDGGPTWQVQLGRRDSRTANLAGTSGIPLGNETLDRISEKFRAVGLDDPTDLVALSG-AHTFGRARC 184 (313)
Q Consensus 106 ADiialaa~~av~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~~elVaL~G-aHtiG~~hc 184 (313)
||||||||++||+.||||.|+|++||+|++++.+.+ ||.|+.++++|++.|+++||+++ |||||+| |||||++||
T Consensus 101 ADiialAa~~AV~~~GGP~i~v~~GR~Da~~s~~~g---lP~P~~~v~~l~~~Fa~~Gfs~~-DmVaLsggaHTiG~ahc 176 (264)
T cd08201 101 ADLIAMGVVTSVASCGGPVVPFRAGRIDATEAGQAG---VPEPQTDLGTTTESFRRQGFSTS-EMIALVACGHTLGGVHS 176 (264)
T ss_pred HHHHHHHHHHHHHHcCCCeecccccCCCcccccccc---CCCCccCHHHHHHHHHHcCCChH-HHheeecCCeeeeeccc
Confidence 999999999999999999999999999999988764 99999999999999999999999 9999995 999999999
Q ss_pred cccccccccCCCCCCCCCCCCHHHHHHHHhcCCCCCCCCCcccCCCCCCCCCChHHHHHHhcCcc----------cccch
Q 039981 185 VAFRNRLFNFDGAGNPDPTIDPTYLQTLRQNCPQGGNGNALVDLDPTTADGFDNNYFTNLQNNRG----------LLTSD 254 (313)
Q Consensus 185 ~~f~~rl~~~~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~~d~~tp~~FDN~Yy~~l~~~~g----------~l~sD 254 (313)
..|.+++- |. ...+...+|| .||.+|||+||.+++.+.. .+.||
T Consensus 177 ~~f~~~~~---------~g----------------~~~~~~~p~d-stp~~FDn~~f~E~l~g~~~~~L~~~~~~~~~sd 230 (264)
T cd08201 177 EDFPEIVP---------PG----------------SVPDTVLQFF-DTTIQFDNKVVTEYLSGTTNNPLVVGPNNTTNSD 230 (264)
T ss_pred ccchhhcC---------Cc----------------cccCCCCCCC-CCccccchHHHHHHhcCCCCCceeecCCCCccch
Confidence 98876531 10 0001245677 7999999999999998742 36899
Q ss_pred hhhhccCChhHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Q 039981 255 QVLFSTTGAKTVAIVNRFANSQTDFFDTFGQAMIKMGN 292 (313)
Q Consensus 255 ~~L~~~~d~~t~~~v~~yA~d~~~F~~~Fa~A~~Kms~ 292 (313)
..++..+... .++..| |+..|.+.++..++||.+
T Consensus 231 ~r~f~~d~n~---t~~~l~-~~~~f~~~c~~~~~~mi~ 264 (264)
T cd08201 231 LRIFSSDGNV---TMNELA-SPDTFQKTCADILQRMID 264 (264)
T ss_pred hhheecCccH---HHHHhc-ChHHHHHHHHHHHHHHhC
Confidence 9999854333 345666 899999999999999974
No 14
>cd08200 catalase_peroxidase_2 C-terminal non-catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C-terminal do
Probab=100.00 E-value=2.6e-42 Score=321.08 Aligned_cols=219 Identities=19% Similarity=0.236 Sum_probs=180.8
Q ss_pred HHHHHHHhcCccchhhHHHHhhhcccc-------cCCCce-eecCCCCCCCCCCccCCCCCCC--C-CccchHHHHHHHH
Q 039981 27 GVVEQARNNDARIGARLIRVHFHDCFV-------NGCDGS-LLLDDSAPGGIQSEKNGNPNLS--T-GGYEVVDDIKTAL 95 (313)
Q Consensus 27 ~~v~~~~~~~~~~a~~~lRl~FHDc~~-------~GcDgS-ill~~~~~~~~~~E~~~~~N~~--l-~g~~~i~~iK~~l 95 (313)
+.|++.+.....+++.||||+||++.+ ||++|+ |.| .+|++|+.|++ | +.+.++++||+++
T Consensus 17 ~~lk~~i~~~gl~~~~lvrlAWhsAgTyr~sd~rGGaNGariRl--------~pe~~w~~N~~~~L~~~~~~Le~ik~~~ 88 (297)
T cd08200 17 AALKAKILASGLTVSELVSTAWASASTFRNSDKRGGANGARIRL--------APQKDWEVNEPEELAKVLAVLEGIQKEF 88 (297)
T ss_pred HHHHHHHHhcCCcHHHHHHHhhhccccccCCCCCCCCCcccccC--------ccccCcCccCcHHHHHHHHHHHHHHHHh
Confidence 567777777788999999999999986 799999 555 47999999999 8 8999999999999
Q ss_pred hhc-CC-CccchHHHHHHhhHhHhhhcCC-----CceEeeCCCCCCCCCCCcCCC---CCCCCC------------CCHH
Q 039981 96 ENV-CP-GVVSCADILAIASQILVSLDGG-----PTWQVQLGRRDSRTANLAGTS---GIPLGN------------ETLD 153 (313)
Q Consensus 96 e~~-cp-~~VS~ADiialaa~~av~~~GG-----P~~~v~~GR~D~~~s~~~~~~---~lP~p~------------~~~~ 153 (313)
... -+ ..||+||+|+||+.+|||.+|| |.|++.+||.|++.+...... .+|.+. .+.+
T Consensus 89 ~~~~~~~~~vS~ADLivLaG~vAiE~agg~ag~~p~Ipf~pGR~Da~~~~td~~sf~~l~P~adg~rny~~~~~~~~~~~ 168 (297)
T cd08200 89 NESQSGGKKVSLADLIVLGGCAAVEKAAKDAGVDIKVPFTPGRTDATQEQTDVESFEVLEPKADGFRNYLKKGYRVPPEE 168 (297)
T ss_pred cccccCCccccHHHHHHHHhHHHHHHHHhccCCCceeccCCCCCCcccCCCCcccccccCCCCcccccccccCCCCCHHH
Confidence 532 12 2699999999999999999999 999999999999876433211 335332 2347
Q ss_pred HHHHHHHHCCCCCccchhhhcccc-ccccccccccccccccCCCCCCCCCCCCHHHHHHHHhcCCCCCCCCCcccCCCCC
Q 039981 154 RISEKFRAVGLDDPTDLVALSGAH-TFGRARCVAFRNRLFNFDGAGNPDPTIDPTYLQTLRQNCPQGGNGNALVDLDPTT 232 (313)
Q Consensus 154 ~l~~~F~~~Gl~~~~elVaL~GaH-tiG~~hc~~f~~rl~~~~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~~d~~t 232 (313)
.|++.|.++||+++ |||||+||| ++|..|..++ .| .|+ .+
T Consensus 169 ~Lrd~f~rlglsd~-EmvaL~Gg~r~lG~~~~~s~-------~G-------------------------~wT------~~ 209 (297)
T cd08200 169 MLVDKAQLLTLTAP-EMTVLVGGLRVLGANYGGSK-------HG-------------------------VFT------DR 209 (297)
T ss_pred HHHHHHHhCCCChH-HHhheecchhhcccCCCCCC-------CC-------------------------CCc------CC
Confidence 89999999999999 999999997 7998874321 11 122 58
Q ss_pred CCCCChHHHHHHhcCc--------------------c-----cccchhhhhccCChhHHHHHHHHhcC--HHHHHHHHHH
Q 039981 233 ADGFDNNYFTNLQNNR--------------------G-----LLTSDQVLFSTTGAKTVAIVNRFANS--QTDFFDTFGQ 285 (313)
Q Consensus 233 p~~FDN~Yy~~l~~~~--------------------g-----~l~sD~~L~~~~d~~t~~~v~~yA~d--~~~F~~~Fa~ 285 (313)
|.+|||.||++|++.. | ++.+|..|.. |++.|++|+.||.| +++|++||++
T Consensus 210 p~~f~N~fF~nLLd~~~~W~~~~~~~~~~~~~dr~~g~~~~~~t~~Dl~l~s--d~~~R~~ve~YA~dd~~~~F~~DF~~ 287 (297)
T cd08200 210 PGVLTNDFFVNLLDMSTEWKPADEDDGLFEGRDRKTGEVKWTATRVDLVFGS--NSELRAVAEVYASDDAQEKFVKDFVA 287 (297)
T ss_pred CCccccHHHHHHhcccceeeecCCCCCceeeccCCCCceeeccChhhhhhcc--CHHHHHHHHHHhcccchhHHHHHHHH
Confidence 9999999999999520 1 2678999999 99999999999999 9999999999
Q ss_pred HHHHhhcCC
Q 039981 286 AMIKMGNIR 294 (313)
Q Consensus 286 A~~Kms~lg 294 (313)
||.||+++.
T Consensus 288 A~~Klmeld 296 (297)
T cd08200 288 AWTKVMNLD 296 (297)
T ss_pred HHHHHHhcC
Confidence 999999874
No 15
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=1.3e-36 Score=310.21 Aligned_cols=221 Identities=20% Similarity=0.275 Sum_probs=177.6
Q ss_pred HHHHHHHHHH---HhcCccchhhHHHHhhhcccc-------cCCCce-eecCCCCCCCCCCccCCCCC--CCC-CccchH
Q 039981 23 SIVRGVVEQA---RNNDARIGARLIRVHFHDCFV-------NGCDGS-LLLDDSAPGGIQSEKNGNPN--LST-GGYEVV 88 (313)
Q Consensus 23 ~~Vr~~v~~~---~~~~~~~a~~~lRl~FHDc~~-------~GcDgS-ill~~~~~~~~~~E~~~~~N--~~l-~g~~~i 88 (313)
++|+++|+.. +.......+.|||++||++.+ ||++|+ |.|. +|++++.| .+| +.+.++
T Consensus 428 ~~v~~di~~lk~~i~~sgl~~~~lVr~AWhsA~Tyr~sd~rGGaNGariRl~--------pe~~w~~N~p~gL~~vl~~L 499 (716)
T TIGR00198 428 TLSEGDIKELKQQILASGLSVSELVCTAWASASTFRSSDYRGGANGARIRLE--------PQKNWPVNEPTRLAKVLAVL 499 (716)
T ss_pred hhHHHHHHHHHHHHHhcCCcHHHHHHHhhhhcccccCCCCCCCCCcceeecc--------hhcCcccCCHHHHHHHHHHH
Confidence 3445555553 456677899999999999986 799998 6664 79999999 888 899999
Q ss_pred HHHHHHHhhcCCCccchHHHHHHhhHhHhhhc---CCC--ceEeeCCCCCCCCCCCcCCCCC---CCC------------
Q 039981 89 DDIKTALENVCPGVVSCADILAIASQILVSLD---GGP--TWQVQLGRRDSRTANLAGTSGI---PLG------------ 148 (313)
Q Consensus 89 ~~iK~~le~~cp~~VS~ADiialaa~~av~~~---GGP--~~~v~~GR~D~~~s~~~~~~~l---P~p------------ 148 (313)
++||+++.. ..||+||+|+||+.+|||.+ ||| .|++.+||.|++.......... |.+
T Consensus 500 e~Ik~~f~~---~~vS~ADLivLaG~vAVE~aa~~gG~~~~Vpf~pGR~Da~~~~td~~~~~~l~p~adgfRn~~~~~~~ 576 (716)
T TIGR00198 500 EKIQAEFAK---GPVSLADLIVLGGGAAVEKAALDAGISVNVPFLPGRVDATQAMTDAESFTPLEPIADGFRNYLKRDYA 576 (716)
T ss_pred HHHHHHcCC---CcccHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCccccCCCCccccccCCCCCcccchhcccccc
Confidence 999999853 27999999999999999999 898 5789999999987643221111 211
Q ss_pred CCCHHHHHHHHHHCCCCCccchhhhccc-cccccccccccccccccCCCCCCCCCCCCHHHHHHHHhcCCCCCCCCCccc
Q 039981 149 NETLDRISEKFRAVGLDDPTDLVALSGA-HTFGRARCVAFRNRLFNFDGAGNPDPTIDPTYLQTLRQNCPQGGNGNALVD 227 (313)
Q Consensus 149 ~~~~~~l~~~F~~~Gl~~~~elVaL~Ga-HtiG~~hc~~f~~rl~~~~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~ 227 (313)
....+.|++.|.++||+++ |||||+|| |++|+.|..++ .| .+
T Consensus 577 ~~~~~~l~d~a~~lglt~~-EmvaL~Gg~r~lG~~~~~s~-------~G-------------------------~~---- 619 (716)
T TIGR00198 577 VTPEELLLDKAQLLTLTAP-EMTVLIGGMRVLGANHGGSK-------HG-------------------------VF---- 619 (716)
T ss_pred CCHHHHHHHHHHhCCCChH-HHHheecchhhccccCCCCC-------CC-------------------------CC----
Confidence 2235678899999999999 99999999 59999985321 11 12
Q ss_pred CCCCCCCCCChHHHHHHhcCc--------------------c---cc--cchhhhhccCChhHHHHHHHHhcCH--HHHH
Q 039981 228 LDPTTADGFDNNYFTNLQNNR--------------------G---LL--TSDQVLFSTTGAKTVAIVNRFANSQ--TDFF 280 (313)
Q Consensus 228 ~d~~tp~~FDN~Yy~~l~~~~--------------------g---~l--~sD~~L~~~~d~~t~~~v~~yA~d~--~~F~ 280 (313)
. .+|.+|||.||++|++.. | ++ .+|..|.. |++.|++|+.||+|+ ++|+
T Consensus 620 -T-~~p~~f~NdfF~~LLd~~~~w~~~~~~~~~~~~~dr~tg~~~~~~t~~Dl~~~s--d~~lra~aE~YA~dd~~~~F~ 695 (716)
T TIGR00198 620 -T-DRVGVLSNDFFVNLLDMAYEWRAADNNRYLFEGGDRQTGEVKWTATRVDLVFGS--NSILRAVAEVYAQDDAREKFV 695 (716)
T ss_pred -c-CCCCccccHHHHHHhcCCceeeecCCCCceeeeecCCCCceeeccChhheeecc--CHHHHHHHHHHhcccccchHH
Confidence 1 589999999999999721 1 22 67999999 999999999999997 8999
Q ss_pred HHHHHHHHHhhcCCC
Q 039981 281 DTFGQAMIKMGNIRP 295 (313)
Q Consensus 281 ~~Fa~A~~Kms~lgv 295 (313)
+||++||.||++++-
T Consensus 696 ~DF~~Aw~Klm~ldr 710 (716)
T TIGR00198 696 KDFVAAWTKVMNLDR 710 (716)
T ss_pred HHHHHHHHHHHhCCC
Confidence 999999999999984
No 16
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=2.3e-36 Score=306.95 Aligned_cols=220 Identities=19% Similarity=0.250 Sum_probs=181.0
Q ss_pred HHHHHHHhcCccchhhHHHHhhhcccc-------cCCCce-eecCCCCCCCCCCccCCCCCC--CC-CccchHHHHHHHH
Q 039981 27 GVVEQARNNDARIGARLIRVHFHDCFV-------NGCDGS-LLLDDSAPGGIQSEKNGNPNL--ST-GGYEVVDDIKTAL 95 (313)
Q Consensus 27 ~~v~~~~~~~~~~a~~~lRl~FHDc~~-------~GcDgS-ill~~~~~~~~~~E~~~~~N~--~l-~g~~~i~~iK~~l 95 (313)
.++++.+....-..+.|||++||++.+ ||++|+ |+|. +|++++.|+ +| +.+.++++||+++
T Consensus 442 ~~lk~~i~~~gl~~~~LVr~AWhsA~Tyr~sd~rGGaNGarIRl~--------Pq~~w~~N~p~~L~~vl~~LE~Ik~~f 513 (726)
T PRK15061 442 AALKAKILASGLSVSELVSTAWASASTFRGSDKRGGANGARIRLA--------PQKDWEVNEPAQLAKVLAVLEGIQAEF 513 (726)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHhhcccccCCCCCCCCCccceecc--------cccCccccCHHHHHHHHHHHHHHHHHH
Confidence 566777777778899999999999986 799998 7664 799999999 78 8999999999999
Q ss_pred hhcCC--CccchHHHHHHhhHhHhhhc---CC--CceEeeCCCCCCCCCCCcCCC---CCCCCC------------CCHH
Q 039981 96 ENVCP--GVVSCADILAIASQILVSLD---GG--PTWQVQLGRRDSRTANLAGTS---GIPLGN------------ETLD 153 (313)
Q Consensus 96 e~~cp--~~VS~ADiialaa~~av~~~---GG--P~~~v~~GR~D~~~s~~~~~~---~lP~p~------------~~~~ 153 (313)
+..-. ..||+||+|+||+.+|||.+ || |.|++.+||.|++........ .+|.+. ...+
T Consensus 514 ~~~~~~~~~vS~ADLivLaG~vAIE~aa~~aG~~~~VPf~pGR~Da~~~~td~esf~~l~P~Adgfrny~~~~~~~~~e~ 593 (726)
T PRK15061 514 NAAQSGGKKVSLADLIVLGGNAAVEQAAKAAGHDVTVPFTPGRTDATQEQTDVESFAVLEPKADGFRNYLKKGYSVSPEE 593 (726)
T ss_pred hhccCCCCceeHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCCcccCCCCcccccccCCCCccccccccccCCCCHHH
Confidence 65321 36999999999999999999 68 999999999999886443321 346532 1347
Q ss_pred HHHHHHHHCCCCCccchhhhcccc-ccccccccccccccccCCCCCCCCCCCCHHHHHHHHhcCCCCCCCCCcccCCCCC
Q 039981 154 RISEKFRAVGLDDPTDLVALSGAH-TFGRARCVAFRNRLFNFDGAGNPDPTIDPTYLQTLRQNCPQGGNGNALVDLDPTT 232 (313)
Q Consensus 154 ~l~~~F~~~Gl~~~~elVaL~GaH-tiG~~hc~~f~~rl~~~~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~~d~~t 232 (313)
.|++.|.++||+++ |||||+||| ++|..|..++ .| .++ .+
T Consensus 594 ~L~d~a~~lglt~~-EmvaL~Gg~r~Lg~~~~~S~-------~G-------------------------~~T------~~ 634 (726)
T PRK15061 594 LLVDKAQLLTLTAP-EMTVLVGGLRVLGANYGGSK-------HG-------------------------VFT------DR 634 (726)
T ss_pred HHHHHHHhCCCChH-HHhheecchhhcccCCCCCC-------CC-------------------------CCc------CC
Confidence 89999999999999 999999997 7888874321 01 121 58
Q ss_pred CCCCChHHHHHHhcCc--------------------c---c--ccchhhhhccCChhHHHHHHHHhcC--HHHHHHHHHH
Q 039981 233 ADGFDNNYFTNLQNNR--------------------G---L--LTSDQVLFSTTGAKTVAIVNRFANS--QTDFFDTFGQ 285 (313)
Q Consensus 233 p~~FDN~Yy~~l~~~~--------------------g---~--l~sD~~L~~~~d~~t~~~v~~yA~d--~~~F~~~Fa~ 285 (313)
|.+|||.||++|++.. | + +.+|..|.. |++.|++|+.||.| +++|++||++
T Consensus 635 p~~fsNdfFvnLLdm~~~W~~~~~~~~~ye~~Dr~tg~~~~~~t~~Dlvfgs--ds~lRa~aEvYA~dd~~~kF~~DF~~ 712 (726)
T PRK15061 635 PGVLTNDFFVNLLDMGTEWKPTDEDEEVYEGRDRKTGEVKWTATRVDLVFGS--NSQLRALAEVYASDDAKEKFVRDFVA 712 (726)
T ss_pred CCccccHHHHHHhcCCceeeecCCCCCceeeccCCCcceeeccChhheeccc--CHHHHHHHHHHhcccchhHHHHHHHH
Confidence 9999999999999521 1 1 478999999 99999999999999 9999999999
Q ss_pred HHHHhhcCCC
Q 039981 286 AMIKMGNIRP 295 (313)
Q Consensus 286 A~~Kms~lgv 295 (313)
||.||++++-
T Consensus 713 Aw~Kvmeldr 722 (726)
T PRK15061 713 AWTKVMNLDR 722 (726)
T ss_pred HHHHHHhCCC
Confidence 9999999974
No 17
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.7e-34 Score=281.63 Aligned_cols=251 Identities=24% Similarity=0.320 Sum_probs=200.7
Q ss_pred HHHHHHHHHHhcC--------ccchhhHHHHhhhcccccCCCceeec-CCCCC-----CCCCCccCCCCCCCC-CccchH
Q 039981 24 IVRGVVEQARNND--------ARIGARLIRVHFHDCFVNGCDGSLLL-DDSAP-----GGIQSEKNGNPNLST-GGYEVV 88 (313)
Q Consensus 24 ~Vr~~v~~~~~~~--------~~~a~~~lRl~FHDc~~~GcDgSill-~~~~~-----~~~~~E~~~~~N~~l-~g~~~i 88 (313)
.|+..+...+... ....|.+|||+||-+.++ .+ |++|| -++.++.+||.|.+| +++.++
T Consensus 71 Avk~Dl~aLmtdSqdWWPAD~GhYGplfIRmAWHsAGTY------Ri~DGRGGa~~G~qRFaPlnSWPDN~nLDKarRLL 144 (730)
T COG0376 71 AVKRDLKALMTDSQDWWPADFGHYGPLFIRMAWHSAGTY------RIGDGRGGAGGGQQRFAPLNSWPDNANLDKARRLL 144 (730)
T ss_pred HHHHHHHHHhhcccccCcccccccccceeeeeecccCce------ecccCCCCCCCCceecccccCCCcccchHHHHHHh
Confidence 5666677666644 257999999999999863 11 22211 367889999999999 999999
Q ss_pred HHHHHHHhhcCCCccchHHHHHHhhHhHhhhcCCCceEeeCCCCCCCCCCC-----------------------------
Q 039981 89 DDIKTALENVCPGVVSCADILAIASQILVSLDGGPTWQVQLGRRDSRTANL----------------------------- 139 (313)
Q Consensus 89 ~~iK~~le~~cp~~VS~ADiialaa~~av~~~GGP~~~v~~GR~D~~~s~~----------------------------- 139 (313)
++||+++. ..||+||+|+|++.+|+|.+|++++.+..||.|...+..
T Consensus 145 WPIKkKYG----~kiSWaDL~iLaGnvAlEsMGfktfGFa~GR~D~wepd~dvyWG~e~~wl~d~Ry~~~~~Le~Plaav 220 (730)
T COG0376 145 WPIKKKYG----RKISWADLIILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGSEKTWLGDERYSGDRDLENPLAAV 220 (730)
T ss_pred hhHhHhhc----ccccHhHhhhhhchhhhhhcCCccccccCCCCcCCCCccccccCccccccccccccccccccCchhhh
Confidence 99999995 589999999999999999999999999999999888765
Q ss_pred ---------cCCCCCCCCCCCHHHHHHHHHHCCCCCccchhhhc-cccccccccccccccccccCCCCCCCCCCCCHHHH
Q 039981 140 ---------AGTSGIPLGNETLDRISEKFRAVGLDDPTDLVALS-GAHTFGRARCVAFRNRLFNFDGAGNPDPTIDPTYL 209 (313)
Q Consensus 140 ---------~~~~~lP~p~~~~~~l~~~F~~~Gl~~~~elVaL~-GaHtiG~~hc~~f~~rl~~~~g~~~~dp~~~~~~~ 209 (313)
++++..|+|-.+..++++.|++|++|++ |+|||+ ||||+|++|...-... -+++|.-.+--.
T Consensus 221 qMGLIYVNPEGpng~PDpl~aA~dIRetFaRMaMNDe-ETVALiaGGHtfGKtHGag~a~~-------vg~ePe~a~ie~ 292 (730)
T COG0376 221 QMGLIYVNPEGPNGNPDPLAAARDIRETFARMAMNDE-ETVALIAGGHTFGKTHGAGPASN-------VGPEPEAAPIEQ 292 (730)
T ss_pred eeeeEEeCCCCCCCCCChhhhHHHHHHHHHHhcCCcH-hhhhhhhcccccccccCCCchhh-------cCCCccccchhh
Confidence 3444678898999999999999999999 999999 6999999996542211 246776665556
Q ss_pred HHHHh--cCCCCCC-CCCcccCC---CCCCCCCChHHHHHHhcCc-----------------------------------
Q 039981 210 QTLRQ--NCPQGGN-GNALVDLD---PTTADGFDNNYFTNLQNNR----------------------------------- 248 (313)
Q Consensus 210 ~~L~~--~Cp~~~~-~~~~~~~d---~~tp~~FDN~Yy~~l~~~~----------------------------------- 248 (313)
+.|-+ .|....+ +.....++ ..||++|||+||.+|+...
T Consensus 293 qGlGW~~~~g~G~G~dtitsGlE~~Wt~tPT~w~n~ff~~Lf~yEWeltksPAGa~Qw~~k~~~~~~~pd~~dp~~~~~p 372 (730)
T COG0376 293 QGLGWANTYGSGKGPDTITSGLEGAWTTTPTQWSNEFFENLFNYEWELTKSPAGAWQWDAKSAAAETIPDAHDPSKKHGP 372 (730)
T ss_pred hccccccccCCCcCcccccccccccCCCCcchhhhHHHHHHhccceeeecCCCccccccccCccccCCCCCCCcccccCc
Confidence 66643 3333222 22233333 2689999999999998631
Q ss_pred ccccchhhhhccCChhHHHHHHHHhcCHHHHHHHHHHHHHHhhcCC
Q 039981 249 GLLTSDQVLFSTTGAKTVAIVNRFANSQTDFFDTFGQAMIKMGNIR 294 (313)
Q Consensus 249 g~l~sD~~L~~~~d~~t~~~v~~yA~d~~~F~~~Fa~A~~Kms~lg 294 (313)
.||.+|.+|.. ||..+.+.++|.+||+.|.+.|++||.||++-.
T Consensus 373 ~MlttDlaLr~--DP~Y~kIs~rf~e~pd~F~~~FArAWfKLtHRD 416 (730)
T COG0376 373 MMLTTDLALRF--DPEYEKISRRFLEDPDEFADAFARAWFKLTHRD 416 (730)
T ss_pred eeeccchhhhc--ChHHHHHHHHHHhCHHHHHHHHHHHHHHHhhcc
Confidence 47999999999 999999999999999999999999999999753
No 18
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.63 E-value=1.7e-15 Score=149.05 Aligned_cols=216 Identities=19% Similarity=0.264 Sum_probs=161.5
Q ss_pred HHHHHHHhcCccchhhHHHHhhhcccc-------cCCCceeecCCCCCCCCCCccCCCCCCC--C-CccchHHHHHHHHh
Q 039981 27 GVVEQARNNDARIGARLIRVHFHDCFV-------NGCDGSLLLDDSAPGGIQSEKNGNPNLS--T-GGYEVVDDIKTALE 96 (313)
Q Consensus 27 ~~v~~~~~~~~~~a~~~lRl~FHDc~~-------~GcDgSill~~~~~~~~~~E~~~~~N~~--l-~g~~~i~~iK~~le 96 (313)
.+++..+.+..-....|+-.+|-.+-+ +|.+|--+ +..+.++|+.|.. | +.+.+++.|.+.++
T Consensus 452 ~~lK~~IlasgLsvs~lVstAWaSAsTfRgsDkRGGaNGaRi-------rLaPqkdWevN~P~~l~kvl~~le~iq~~fn 524 (730)
T COG0376 452 AALKAKILASGLSVSQLVSTAWASASTFRGSDKRGGANGARI-------RLAPQKDWEVNQPAELAKVLAVLEKIQKEFN 524 (730)
T ss_pred HHHHHHHHHccCCHHHHHHHHHHhhhhccCCcccCCcCcceE-------eecccccCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 456677777777889999999998875 57766532 2346899999965 4 78899999999987
Q ss_pred hcCCCccchHHHHHHhhHhHhhhc---CCCce--EeeCCCCCCCCCCCcCCC--CC-CC-----------CCCCH-HHHH
Q 039981 97 NVCPGVVSCADILAIASQILVSLD---GGPTW--QVQLGRRDSRTANLAGTS--GI-PL-----------GNETL-DRIS 156 (313)
Q Consensus 97 ~~cp~~VS~ADiialaa~~av~~~---GGP~~--~v~~GR~D~~~s~~~~~~--~l-P~-----------p~~~~-~~l~ 156 (313)
..||.||+|+|++..|||.+ +|-.+ ++.+||.|+......... .| |- ...+. +-|+
T Consensus 525 ----kkvSlADlIVL~G~a~ie~AAk~aG~~v~VPF~pGR~DA~qeqtDv~sf~~LeP~aDGfRNy~~~~~~~~pe~~Lv 600 (730)
T COG0376 525 ----KKVSLADLIVLGGNAAVEKAAKAAGFSVTVPFAPGRTDASQEQTDVESFAVLEPIADGFRNYVKKDYVLTPEELLV 600 (730)
T ss_pred ----CccchhHheeecchHHHHHHHHhcCceeeeccCCCCcccchhhcchhhhhcccccchhhhhhccCCCcCCHHHHHH
Confidence 37999999999999999986 67655 567999999876544322 11 21 11233 4477
Q ss_pred HHHHHCCCCCccchhhhcccc-ccccccccccccccccCCCCCCCCCCCCHHHHHHHHhcCCCCCCCCCcccCCCCCCCC
Q 039981 157 EKFRAVGLDDPTDLVALSGAH-TFGRARCVAFRNRLFNFDGAGNPDPTIDPTYLQTLRQNCPQGGNGNALVDLDPTTADG 235 (313)
Q Consensus 157 ~~F~~~Gl~~~~elVaL~GaH-tiG~~hc~~f~~rl~~~~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~~d~~tp~~ 235 (313)
++-+-++|+.. ||++|+||. .+|..+ . +...+++.| .|..
T Consensus 601 DkAqlL~Ltap-emtVLiGGlRvLg~n~-----------g-------------------------~s~~GVfT~--~pg~ 641 (730)
T COG0376 601 DKAQLLTLTAP-EMTVLIGGLRVLGANY-----------G-------------------------GSKHGVFTD--RPGV 641 (730)
T ss_pred HHHHHhccCCc-cceEEEcceEeeccCC-----------C-------------------------CCccceecc--Cccc
Confidence 88889999999 999999875 344322 1 123344443 6889
Q ss_pred CChHHHHHHhcCc--------------------c-----cccchhhhhccCChhHHHHHHHHhcC--HHHHHHHHHHHHH
Q 039981 236 FDNNYFTNLQNNR--------------------G-----LLTSDQVLFSTTGAKTVAIVNRFANS--QTDFFDTFGQAMI 288 (313)
Q Consensus 236 FDN~Yy~~l~~~~--------------------g-----~l~sD~~L~~~~d~~t~~~v~~yA~d--~~~F~~~Fa~A~~ 288 (313)
+.|.||.||++.. | --..|..+-+ ++..|.+.+.||.| ++.|.+||++||.
T Consensus 642 LtndFFvnLlDM~~~W~~~~~~~~~feg~DrktG~~kwt~trvDLvfGs--ns~LRA~aEVYa~dda~ekFv~DFvaaw~ 719 (730)
T COG0376 642 LTNDFFVNLLDMGTEWKPTDDARGLFEGRDRKTGEVKWTATRVDLVFGS--NSELRALAEVYASDDAKEKFVKDFVAAWT 719 (730)
T ss_pred ccchhhhhhhhccceeeeccccccceeccccccCceEeeeeEEeEEecC--cHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 9999999998741 1 1246777777 99999999999986 8899999999999
Q ss_pred HhhcCC
Q 039981 289 KMGNIR 294 (313)
Q Consensus 289 Kms~lg 294 (313)
|.+++.
T Consensus 720 kVMn~D 725 (730)
T COG0376 720 KVMNLD 725 (730)
T ss_pred HHhccc
Confidence 999875
No 19
>PTZ00411 transaldolase-like protein; Provisional
Probab=79.54 E-value=14 Score=35.91 Aligned_cols=132 Identities=14% Similarity=0.137 Sum_probs=67.9
Q ss_pred cCCCceEeeCCCCCCCCCCCcCCCCCCC-C---CCCHHHHHHHHHHCCCCCc---------cchhhhccccccccccccc
Q 039981 120 DGGPTWQVQLGRRDSRTANLAGTSGIPL-G---NETLDRISEKFRAVGLDDP---------TDLVALSGAHTFGRARCVA 186 (313)
Q Consensus 120 ~GGP~~~v~~GR~D~~~s~~~~~~~lP~-p---~~~~~~l~~~F~~~Gl~~~---------~elVaL~GaHtiG~~hc~~ 186 (313)
+|-..|..+.||.+.+.-.+......+. . -..+.++.+.|++.|+..+ .|+.+|.|+|.+
T Consensus 180 AGa~~ISPfVGRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~g~~T~Im~ASfRn~~qi~~laG~D~l------- 252 (333)
T PTZ00411 180 AGVTLISPFVGRILDWYKKPEKAESYVGAQDPGVISVTKIYNYYKKHGYKTIVMGASFRNTGEILELAGCDKL------- 252 (333)
T ss_pred cCCCEEEeecchHHHhcccccccccccccCCchHHHHHHHHHHHHHcCCCeEEEecccCCHHHHHHHHCCCEE-------
Confidence 4778889999999765433322111222 1 2346778889998887653 044455555422
Q ss_pred cccccccCCCCCCCCCCCCHHHHHHHHhcC-CCCCC--CCCcccCCCCCCCCCChHHHHHHhcCcccccchhhhhccCCh
Q 039981 187 FRNRLFNFDGAGNPDPTIDPTYLQTLRQNC-PQGGN--GNALVDLDPTTADGFDNNYFTNLQNNRGLLTSDQVLFSTTGA 263 (313)
Q Consensus 187 f~~rl~~~~g~~~~dp~~~~~~~~~L~~~C-p~~~~--~~~~~~~d~~tp~~FDN~Yy~~l~~~~g~l~sD~~L~~~~d~ 263 (313)
+++|...+.|...- ..-.. ++....-....+..+|-..|+-.++..++ = -.
T Consensus 253 ----------------Ti~p~ll~~L~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~fr~~~~~d~m------a----~e 306 (333)
T PTZ00411 253 ----------------TISPKLLEELANTEDGPVERKLDPEKLTEDTEKLPELTEKEFRWELNEDAM------A----TE 306 (333)
T ss_pred ----------------eCCHHHHHHHHhCCCcccCcccCcccccccccccCCCCHHHHHHHhCCCcc------h----HH
Confidence 35566666665422 11000 00000001112355788888654332222 1 12
Q ss_pred hHHHHHHHHhcCHHHHHHHHH
Q 039981 264 KTVAIVNRFANSQTDFFDTFG 284 (313)
Q Consensus 264 ~t~~~v~~yA~d~~~F~~~Fa 284 (313)
....-++.|+.|+....+-..
T Consensus 307 kl~~gir~F~~d~~~Le~~i~ 327 (333)
T PTZ00411 307 KLAEGIRNFAKDLEKLENVIR 327 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344567778887776655443
No 20
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=69.27 E-value=44 Score=33.26 Aligned_cols=65 Identities=14% Similarity=0.217 Sum_probs=38.0
Q ss_pred cchHHHHHHhhHhHhh--hcCCCceEeeCCCCCCCCCCCcCCCCCCCCCC----CHHHHHHHHHHCCCCCc
Q 039981 103 VSCADILAIASQILVS--LDGGPTWQVQLGRRDSRTANLAGTSGIPLGNE----TLDRISEKFRAVGLDDP 167 (313)
Q Consensus 103 VS~ADiialaa~~av~--~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~----~~~~l~~~F~~~Gl~~~ 167 (313)
|.|-=.+.+....|+. .+|-..|..+.||.|.+.-...+...+|...+ .+.++.+.|++.|+..+
T Consensus 155 I~~n~TlvFS~~QA~aaaeAGa~~ISPfVgRi~dw~~~~~g~~~~~~~~dpGv~~v~~i~~~~~~~~~~T~ 225 (391)
T PRK12309 155 IHCNLTLLFGFHQAIACAEAGVTLISPFVGRILDWYKKETGRDSYPGAEDPGVQSVTQIYNYYKKFGYKTE 225 (391)
T ss_pred CceeeeeecCHHHHHHHHHcCCCEEEeecchhhhhhhhccCCCccccccchHHHHHHHHHHHHHhcCCCcE
Confidence 3333333444333333 34778899999999875433222112443333 36778888988887654
No 21
>PRK05269 transaldolase B; Provisional
Probab=62.89 E-value=45 Score=32.26 Aligned_cols=49 Identities=14% Similarity=0.099 Sum_probs=30.7
Q ss_pred hcCCCceEeeCCCCCCCCCCCcCCCCCC----CCCCCHHHHHHHHHHCCCCCc
Q 039981 119 LDGGPTWQVQLGRRDSRTANLAGTSGIP----LGNETLDRISEKFRAVGLDDP 167 (313)
Q Consensus 119 ~~GGP~~~v~~GR~D~~~s~~~~~~~lP----~p~~~~~~l~~~F~~~Gl~~~ 167 (313)
.+|-..|..+.||.|...-...+....+ ++-..+.++.+.|++.|+..+
T Consensus 169 ~AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~~~~t~ 221 (318)
T PRK05269 169 EAGVFLISPFVGRILDWYKKNTGKKEYAPAEDPGVVSVTKIYNYYKKHGYKTV 221 (318)
T ss_pred HcCCCEEEeeccHHHHHhhhcccccccCcCCCcHHHHHHHHHHHHHHcCCCce
Confidence 3477888999999986532211100111 123357788889999998765
No 22
>TIGR00874 talAB transaldolase. This family includes the majority of known and predicted transaldolase sequences, including E. coli TalA and TalB. It excluded two other families. The first includes E. coli transaldolase-like protein TalC. The second family includes the putative transaldolases of Helicobacter pylori and Mycobacterium tuberculosis.
Probab=59.66 E-value=61 Score=31.37 Aligned_cols=49 Identities=12% Similarity=0.095 Sum_probs=31.0
Q ss_pred hcCCCceEeeCCCCCCCCCCCcCCCCCC----CCCCCHHHHHHHHHHCCCCCc
Q 039981 119 LDGGPTWQVQLGRRDSRTANLAGTSGIP----LGNETLDRISEKFRAVGLDDP 167 (313)
Q Consensus 119 ~~GGP~~~v~~GR~D~~~s~~~~~~~lP----~p~~~~~~l~~~F~~~Gl~~~ 167 (313)
.+|-..|..+.||.+.+.-...+....+ ++-..+.++.+.|++.|+..+
T Consensus 167 ~AGa~~ISPFVgRi~dw~~~~~g~~~~~~~~d~Gv~~v~~i~~~~k~~g~~T~ 219 (317)
T TIGR00874 167 EAKVTLISPFVGRILDWYKAATGKKEYSIEEDPGVASVKKIYNYYKKHGYPTE 219 (317)
T ss_pred HcCCCEEEeecchHhHhhhhccCccccccccCchHHHHHHHHHHHHHcCCCcE
Confidence 4588889999999977532221100111 123457778889999998755
No 23
>PF11895 DUF3415: Domain of unknown function (DUF3415); InterPro: IPR024589 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Peroxidases are found in bacteria, fungi, plants and animals. Fungal ligninases are extracellular haem enzymes involved in the degradation of lignin. They include lignin peroxidases (LiPs), manganese-dependent peroxidases (MnPs) and versatile peroxidases, which combine the substrate-specificity characteristics of the other two []. In MnP, Mn2+ serves as the reducing substrate []. It is commonly thought that the plant polymer lignin is the second most abundant organic compound on Earth, exceeded only by cellulose. Higher plants synthesise vast quantities of insoluble macromolecules, including lignins. Lignin is an amorphous three-dimensional aromatic biopolymer composed of oxyphenylpropane units. Biodegradation of lignins is slow - it is probable that their decomposition is the rate-limiting step in the biospheric carbon-oxygen cycle, which is mediated almost entirely by the catabolic activities of microorganisms. The white-rot fungi are able extensively to decompose all the important structural components of wood, including both cellulose and lignin. Under the proper environmental conditions, white-rot fungi completely degrade all structural components of lignin, with ultimate formation of CO2 and H2O. The first step in lignin degradation is depolymerisation, catalysed by the LiPs (ligninases). LiPs are secreted, along with hydrogen peroxide (H2O2), by white-rot fungi under conditions of nutrient limitation. The enzymes are not only important in lignin biodegradation, but are also potentially valuable in chemical waste disposal because of their ability to degrade environmental pollutants []. To date, 3D structures have been determined for LiP [] and MnP [] from Phanerochaete chrysosporium (White-rot fungus), and for the fungal peroxidase from Arthromyces ramosus []. All these proteins share the same architecture and consist of 2 all-alpha domains, between which is embedded the haem group. The helical topography of LiPs is nearly identical to that of yeast cytochrome c peroxidase (CCP) [], despite the former having 4 disulphide bonds, which are absent in CCP (MnP has an additional disulphide bond at the C terminus). This uncharacterised C-terminal domain is found in fungal ligninases. It is about 80 amino acids in length and associated with Pfam:PF00141.; PDB: 1B85_B 1B82_A 1B80_A 1YYG_A 1YZP_A 1MNP_A 1MN1_A 1YZR_A 1MN2_A 3M8M_A ....
Probab=57.25 E-value=9.2 Score=29.51 Aligned_cols=19 Identities=21% Similarity=0.233 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHhhcCCCC
Q 039981 278 DFFDTFGQAMIKMGNIRPL 296 (313)
Q Consensus 278 ~F~~~Fa~A~~Kms~lgv~ 296 (313)
.....|..||.||+.||..
T Consensus 2 ~m~~~F~~am~KlavLG~d 20 (80)
T PF11895_consen 2 KMQSAFKAAMAKLAVLGHD 20 (80)
T ss_dssp HHHHHHHHHHHHHCTTTS-
T ss_pred hHHHHHHHHHHHHHHhcCC
Confidence 3567899999999999864
No 24
>PRK12346 transaldolase A; Provisional
Probab=45.04 E-value=15 Score=35.46 Aligned_cols=66 Identities=9% Similarity=0.008 Sum_probs=38.2
Q ss_pred ccchHHHHHHhhHhHhh--hcCCCceEeeCCCCCCCCCCCcCCCCCCCC----CCCHHHHHHHHHHCCCCCc
Q 039981 102 VVSCADILAIASQILVS--LDGGPTWQVQLGRRDSRTANLAGTSGIPLG----NETLDRISEKFRAVGLDDP 167 (313)
Q Consensus 102 ~VS~ADiialaa~~av~--~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p----~~~~~~l~~~F~~~Gl~~~ 167 (313)
.|+|-=.+.|....|+. .+|-..|..+.||.|.+.-.......++.. -..+.++.+.|++.|+..+
T Consensus 149 GI~~n~TliFS~~Qa~~aa~AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~~~~T~ 220 (316)
T PRK12346 149 GINCNLTLLFSFAQARACAEAGVFLISPFVGRIYDWYQARKPMDPYVVEEDPGVKSVRNIYDYYKQHRYETI 220 (316)
T ss_pred CCceeEEEecCHHHHHHHHHcCCCEEEecccHHHHhhhhccccccccccCCChHHHHHHHHHHHHHcCCCcE
Confidence 34444444444444443 358888999999998754321111112221 2346778889988887654
No 25
>cd00957 Transaldolase_TalAB Transaldolases including both TalA and TalB. The enzyme catalyses the reversible transfer of a dyhydroxyacetone moiety, derived from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. The catalytic mechanism is similar to other class I aldolases. The enzyme is found in the non-oxidative branch of the pentose phosphate pathway and forms a dimer in solution.
Probab=42.13 E-value=18 Score=34.99 Aligned_cols=65 Identities=15% Similarity=0.209 Sum_probs=37.1
Q ss_pred cchHHHHHHhhHhHhh--hcCCCceEeeCCCCCCCCCCCcCCCCCCC----CCCCHHHHHHHHHHCCCCCc
Q 039981 103 VSCADILAIASQILVS--LDGGPTWQVQLGRRDSRTANLAGTSGIPL----GNETLDRISEKFRAVGLDDP 167 (313)
Q Consensus 103 VS~ADiialaa~~av~--~~GGP~~~v~~GR~D~~~s~~~~~~~lP~----p~~~~~~l~~~F~~~Gl~~~ 167 (313)
|+|-=.+.+....|+. .+|-..|..+.||.|...-...+....+. +-..+.++.+.|++.|+..+
T Consensus 149 I~vn~TlvFS~~Qa~~aa~AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~d~Gv~~v~~i~~~~~~~~~~T~ 219 (313)
T cd00957 149 IHCNLTLLFSFAQAVACAEAGVTLISPFVGRILDWYKKHSGDKAYTAEEDPGVASVKKIYNYYKKFGYKTK 219 (313)
T ss_pred CceeeeeecCHHHHHHHHHcCCCEEEeecchHHHhhhhccccccCCccCCcHHHHHHHHHHHHHHcCCCcE
Confidence 4444444444443333 34777889999999865332211101111 22347788889999998765
No 26
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.42 E-value=69 Score=24.17 Aligned_cols=31 Identities=16% Similarity=0.209 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHhcCccchhhHHHHhhhccc
Q 039981 22 SSIVRGVVEQARNNDARIGARLIRVHFHDCF 52 (313)
Q Consensus 22 e~~Vr~~v~~~~~~~~~~a~~~lRl~FHDc~ 52 (313)
.-|.|+.+++.++++|.+....||+.+---+
T Consensus 22 ~fiark~~~k~lk~NPpine~~iR~M~~qmG 52 (71)
T COG3763 22 FFIARKQMKKQLKDNPPINEEMIRMMMAQMG 52 (71)
T ss_pred HHHHHHHHHHHHhhCCCCCHHHHHHHHHHhC
Confidence 4588999999999999999999999987543
No 27
>cd00439 Transaldolase Transaldolase. Enzymes found in the non-oxidative branch of the pentose phosphate pathway, that catalyze the reversible transfer of a dihydroxyacetone group from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. They are members of the class I aldolases, who are characterized by using a Schiff-base mechanism for stabilization of the reaction intermediates.
Probab=26.34 E-value=34 Score=31.86 Aligned_cols=48 Identities=10% Similarity=0.082 Sum_probs=28.9
Q ss_pred cCCCceEeeCCCCCCCCCCCcCCCCC-CCCCCC---HHHHHHHHHHCCCCCc
Q 039981 120 DGGPTWQVQLGRRDSRTANLAGTSGI-PLGNET---LDRISEKFRAVGLDDP 167 (313)
Q Consensus 120 ~GGP~~~v~~GR~D~~~s~~~~~~~l-P~p~~~---~~~l~~~F~~~Gl~~~ 167 (313)
+|...+.+++||.|...-.......+ |..... +.++.+.|+..|...+
T Consensus 159 Aga~~ispfvgRid~~~~~~~~~~~~d~~~~~gi~~~~~~~~~~~~~~~~tk 210 (252)
T cd00439 159 AGTSVASPFVSRIDTLMDKMLEQIGLDLRGKAGVAQVTLAYKLYKQKFKKQR 210 (252)
T ss_pred cCCCEEEEeccHHHHHhhhhccccccccccCcHHHHHHHHHHHHHHhCCCCe
Confidence 47778899999999866432221111 111133 4466677777787655
No 28
>PRK01362 putative translaldolase; Provisional
Probab=24.35 E-value=32 Score=31.35 Aligned_cols=39 Identities=26% Similarity=0.350 Sum_probs=27.6
Q ss_pred cCCCceEeeCCCCCCCCCCCcCCCCCCCCCCCHHHHHHHHHHCCCCCc
Q 039981 120 DGGPTWQVQLGRRDSRTANLAGTSGIPLGNETLDRISEKFRAVGLDDP 167 (313)
Q Consensus 120 ~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~ 167 (313)
+|--++..++||.|...- ++..-+.++.+.++..|++.+
T Consensus 121 aGa~yispyvgRi~d~g~---------dg~~~i~~~~~~~~~~~~~tk 159 (214)
T PRK01362 121 AGATYVSPFVGRLDDIGT---------DGMELIEDIREIYDNYGFDTE 159 (214)
T ss_pred cCCcEEEeecchHhhcCC---------CHHHHHHHHHHHHHHcCCCcE
Confidence 355667999999986431 233446788888988898765
No 29
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=22.61 E-value=1.1e+02 Score=29.43 Aligned_cols=96 Identities=20% Similarity=0.320 Sum_probs=57.1
Q ss_pred cCCCceeecCCCC-CCCCCCccCC----CCCCCCC-------ccchHHHHHHHHhhcCC-----CccchHHHH--HHhhH
Q 039981 54 NGCDGSLLLDDSA-PGGIQSEKNG----NPNLSTG-------GYEVVDDIKTALENVCP-----GVVSCADIL--AIASQ 114 (313)
Q Consensus 54 ~GcDgSill~~~~-~~~~~~E~~~----~~N~~l~-------g~~~i~~iK~~le~~cp-----~~VS~ADii--alaa~ 114 (313)
.|.||=++++.+. +.....+... .+-.||. ++++|.++...++..+| ++-|+-|.+ .+|++
T Consensus 185 ~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLSG~~ikp~al~~v~~l~~~~~~~ipIIGvGGI~s~~DA~E~i~aGA 264 (310)
T COG0167 185 AGADGLIAINTTKSGMKIDLETKKPVLANETGGLSGPPLKPIALRVVAELYKRLGGDIPIIGVGGIETGEDALEFILAGA 264 (310)
T ss_pred cCCcEEEEEeeccccccccccccccccCcCCCCcCcccchHHHHHHHHHHHHhcCCCCcEEEecCcCcHHHHHHHHHcCC
Confidence 6999999987541 1112222211 1122332 46778888888886666 556888886 45777
Q ss_pred hHhhhc-----CCCceEeeCCCCCCCCCCCcCCCCCCCCCCC-HHHHHHHHHHCCCC-Cccchhhh
Q 039981 115 ILVSLD-----GGPTWQVQLGRRDSRTANLAGTSGIPLGNET-LDRISEKFRAVGLD-DPTDLVAL 173 (313)
Q Consensus 115 ~av~~~-----GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~-~~~l~~~F~~~Gl~-~~~elVaL 173 (313)
.+|+.. .||.+ ... .++|.+...++||. .+ |+|-+
T Consensus 265 ~~vQv~Tal~~~Gp~i-----------------------~~~I~~~l~~~l~~~g~~si~-d~iG~ 306 (310)
T COG0167 265 SAVQVGTALIYKGPGI-----------------------VKEIIKGLARWLEEKGFESIQ-DIIGS 306 (310)
T ss_pred chheeeeeeeeeCchH-----------------------HHHHHHHHHHHHHHcCCCCHH-HHhch
Confidence 777753 23331 111 35677788889996 56 77653
No 30
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=20.18 E-value=38 Score=30.78 Aligned_cols=39 Identities=18% Similarity=0.224 Sum_probs=27.7
Q ss_pred cCCCceEeeCCCCCCCCCCCcCCCCCCCCCCCHHHHHHHHHHCCCCCc
Q 039981 120 DGGPTWQVQLGRRDSRTANLAGTSGIPLGNETLDRISEKFRAVGLDDP 167 (313)
Q Consensus 120 ~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~ 167 (313)
+|--++..++||.|...- ++..-+.++.+.++..|++.+
T Consensus 121 aGa~yispyvgRi~d~g~---------dg~~~v~~~~~~~~~~~~~tk 159 (213)
T TIGR00875 121 AGATYVSPFVGRLDDIGG---------DGMKLIEEVKTIFENHAPDTE 159 (213)
T ss_pred cCCCEEEeecchHHHcCC---------CHHHHHHHHHHHHHHcCCCCE
Confidence 365667999999987532 123346778888888888866
Done!