Query 039982
Match_columns 253
No_of_seqs 219 out of 1608
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 05:44:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039982.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039982hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1egw_A MADS box transcription 100.0 5.8E-40 2E-44 236.7 0.3 73 2-74 1-73 (77)
2 3p57_A Myocyte-specific enhanc 100.0 2.8E-39 9.7E-44 238.7 -0.1 73 2-74 1-73 (90)
3 1mnm_A Protein (MCM1 transcrip 100.0 1.2E-37 4.1E-42 233.8 0.3 72 1-72 16-87 (100)
4 1hbx_A SRF, serum response fac 100.0 1.8E-37 6.3E-42 229.9 0.7 70 1-70 10-79 (92)
5 1k6o_B SRF, serum response fac 100.0 7.1E-37 2.4E-41 231.0 1.1 69 1-69 9-77 (103)
6 2jee_A YIIU; FTSZ, septum, coi 91.1 1.9 6.5E-05 30.5 8.7 43 122-169 3-45 (81)
7 2w6a_A ARF GTPase-activating p 88.3 4 0.00014 26.9 8.6 53 120-172 8-62 (63)
8 2dfs_A Myosin-5A; myosin-V, in 84.4 1.9 6.5E-05 44.4 7.4 26 153-178 1018-1043(1080)
9 1dip_A Delta-sleep-inducing pe 83.8 1.7 5.7E-05 30.1 4.5 26 147-172 18-43 (78)
10 1dh3_A Transcription factor CR 81.9 6.3 0.00021 25.6 6.6 37 139-179 14-50 (55)
11 2oqq_A Transcription factor HY 81.8 5.3 0.00018 24.5 5.7 26 149-174 15-40 (42)
12 2dgc_A Protein (GCN4); basic d 81.3 6.2 0.00021 26.3 6.7 39 137-179 20-58 (63)
13 1j1d_C Troponin I, TNI; THIN f 76.5 24 0.00082 27.2 10.5 73 99-179 30-107 (133)
14 1gd2_E Transcription factor PA 75.7 9.3 0.00032 26.1 6.2 43 136-178 18-63 (70)
15 3nmd_A CGMP dependent protein 74.7 18 0.00061 24.9 7.8 53 118-177 14-66 (72)
16 2wt7_A Proto-oncogene protein 73.8 13 0.00045 24.5 6.6 37 139-179 15-51 (63)
17 3hnw_A Uncharacterized protein 73.8 26 0.00087 27.0 9.2 19 94-112 67-85 (138)
18 1t2k_D Cyclic-AMP-dependent tr 73.7 13 0.00046 24.2 6.6 37 139-179 14-50 (61)
19 1jnm_A Proto-oncogene C-JUN; B 73.1 14 0.00048 24.3 6.6 39 138-180 13-51 (62)
20 3s9g_A Protein hexim1; cyclin 73.0 19 0.00065 26.2 7.5 29 150-178 64-92 (104)
21 2yy0_A C-MYC-binding protein; 71.2 8.3 0.00028 24.9 4.8 28 148-175 23-50 (53)
22 3oja_B Anopheles plasmodium-re 70.7 43 0.0015 31.2 11.9 31 149-179 549-579 (597)
23 1ci6_A Transcription factor AT 70.4 18 0.00061 24.0 6.6 38 138-179 14-51 (63)
24 1j1e_C Troponin I, TNI; THIN f 67.9 44 0.0015 27.0 9.5 72 99-178 30-106 (180)
25 2oxj_A Hybrid alpha/beta pepti 65.9 10 0.00035 22.0 3.9 27 153-179 3-29 (34)
26 1hjb_A Ccaat/enhancer binding 64.0 26 0.0009 24.8 6.8 27 153-179 38-64 (87)
27 3gp4_A Transcriptional regulat 63.4 47 0.0016 25.3 9.0 58 121-179 59-116 (142)
28 1gu4_A CAAT/enhancer binding p 62.9 30 0.001 24.0 6.8 39 137-179 26-64 (78)
29 1a93_B MAX protein, coiled coi 61.6 13 0.00046 21.7 3.9 26 143-168 6-31 (34)
30 3na7_A HP0958; flagellar bioge 61.3 38 0.0013 28.5 8.6 52 123-174 88-141 (256)
31 3m48_A General control protein 60.7 12 0.00041 21.6 3.5 27 153-179 2-28 (33)
32 1a93_B MAX protein, coiled coi 59.9 9.8 0.00033 22.3 3.1 21 94-114 13-33 (34)
33 1ytz_T Troponin T; muscle, THI 58.0 36 0.0012 25.1 6.8 53 117-177 37-89 (107)
34 1go4_E MAD1 (mitotic arrest de 57.5 28 0.00097 25.4 6.0 21 157-177 74-94 (100)
35 3s9g_A Protein hexim1; cyclin 55.2 57 0.002 23.7 8.4 86 56-173 9-94 (104)
36 1kd8_B GABH BLL, GCN4 acid bas 55.1 20 0.00069 21.1 3.9 26 153-178 3-28 (36)
37 3c3f_A Alpha/beta peptide with 54.2 22 0.00075 20.6 3.9 26 153-178 3-28 (34)
38 1j1d_B Troponin T, TNT; THIN f 53.8 37 0.0013 25.0 6.2 52 118-177 38-89 (106)
39 1go4_E MAD1 (mitotic arrest de 53.8 21 0.00071 26.1 4.8 28 151-178 12-39 (100)
40 2v71_A Nuclear distribution pr 53.1 91 0.0031 25.3 9.7 26 152-177 89-114 (189)
41 3gpv_A Transcriptional regulat 52.8 74 0.0025 24.3 8.3 57 121-178 73-129 (148)
42 3hnw_A Uncharacterized protein 50.9 81 0.0028 24.1 11.4 51 127-177 77-129 (138)
43 2jee_A YIIU; FTSZ, septum, coi 50.7 51 0.0017 23.1 6.2 32 145-176 14-45 (81)
44 1p9i_A Cortexillin I/GCN4 hybr 50.3 20 0.0007 19.7 3.2 19 160-178 8-26 (31)
45 3c3g_A Alpha/beta peptide with 49.5 36 0.0012 19.6 4.5 25 154-178 3-27 (33)
46 3s4r_A Vimentin; alpha-helix, 48.6 70 0.0024 22.7 11.0 72 91-178 12-83 (93)
47 1ci6_A Transcription factor AT 47.5 48 0.0016 21.8 5.5 31 146-176 32-62 (63)
48 1q08_A Zn(II)-responsive regul 47.1 69 0.0024 22.2 7.3 56 121-177 16-72 (99)
49 2aze_A Transcription factor DP 46.8 84 0.0029 24.7 7.6 48 123-172 3-50 (155)
50 3ghg_A Fibrinogen alpha chain; 46.8 1.9E+02 0.0065 27.2 11.5 43 133-176 114-156 (562)
51 2l5g_B Putative uncharacterize 46.1 49 0.0017 20.2 5.2 37 122-166 2-38 (42)
52 2xus_A Breast cancer metastasi 45.5 55 0.0019 20.7 5.6 33 124-163 12-44 (49)
53 2bni_A General control protein 45.1 33 0.0011 19.9 3.7 26 153-178 3-28 (34)
54 3w03_C DNA repair protein XRCC 42.9 37 0.0013 27.5 5.2 30 148-177 149-178 (184)
55 1t2k_D Cyclic-AMP-dependent tr 42.6 65 0.0022 20.8 5.5 27 148-174 33-59 (61)
56 2l5g_A GPS2 protein, G protein 41.8 36 0.0012 20.2 3.5 20 151-170 15-34 (38)
57 2dfs_A Myosin-5A; myosin-V, in 40.5 2.6E+02 0.0087 28.7 12.1 16 94-109 959-974 (1080)
58 3q4f_C DNA repair protein XRCC 39.7 31 0.0011 27.9 4.1 23 151-173 161-183 (186)
59 1nkp_B MAX protein, MYC proto- 39.4 35 0.0012 23.5 4.0 28 150-177 53-80 (83)
60 2hy6_A General control protein 39.3 47 0.0016 19.2 3.7 26 153-178 3-28 (34)
61 1kd8_A GABH AIV, GCN4 acid bas 38.7 34 0.0012 20.1 3.1 25 154-178 4-28 (36)
62 1gd2_E Transcription factor PA 37.8 69 0.0024 21.7 5.1 22 149-170 48-69 (70)
63 1uo4_A General control protein 37.7 51 0.0017 19.1 3.7 27 153-179 3-29 (34)
64 1nkp_A C-MYC, MYC proto-oncoge 36.7 65 0.0022 22.6 5.1 25 154-178 62-86 (88)
65 1am9_A Srebp-1A, protein (ster 35.7 52 0.0018 22.7 4.4 28 151-178 50-77 (82)
66 3ra3_B P2F; coiled coil domain 35.4 29 0.001 18.6 2.3 16 162-177 4-19 (28)
67 1ytz_I Troponin I; muscle, THI 35.2 1.4E+02 0.0048 24.0 7.4 73 98-179 27-104 (182)
68 2v71_A Nuclear distribution pr 34.5 1.8E+02 0.0063 23.5 9.4 18 149-166 68-85 (189)
69 3oja_A Leucine-rich immune mol 34.2 2.6E+02 0.0089 25.1 12.5 26 152-177 436-461 (487)
70 1dip_A Delta-sleep-inducing pe 33.9 1.1E+02 0.0039 20.9 5.8 31 150-180 14-44 (78)
71 2yy0_A C-MYC-binding protein; 33.5 87 0.003 19.9 4.8 29 151-179 19-47 (53)
72 2oa5_A Hypothetical protein BQ 33.2 26 0.00089 26.0 2.5 24 153-176 10-33 (110)
73 3s4r_A Vimentin; alpha-helix, 32.8 1.3E+02 0.0045 21.3 7.6 53 126-178 10-69 (93)
74 3mq7_A Bone marrow stromal ant 32.6 1.5E+02 0.0053 22.1 8.6 33 145-177 72-104 (121)
75 1uii_A Geminin; human, DNA rep 32.1 1.2E+02 0.004 21.3 5.6 27 148-174 50-76 (83)
76 1g6u_A Domain swapped dimer; d 31.0 89 0.003 18.8 6.9 26 120-145 15-40 (48)
77 2w6b_A RHO guanine nucleotide 28.8 1.2E+02 0.0041 19.5 4.8 29 148-176 7-35 (56)
78 1nlw_A MAD protein, MAX dimeri 28.2 1.1E+02 0.0037 21.0 5.0 25 153-177 49-73 (80)
79 2ky6_A Mediator of RNA polymer 28.1 33 0.0011 27.3 2.4 36 36-71 116-159 (166)
80 3twe_A Alpha4H; unknown functi 27.6 76 0.0026 16.9 3.0 19 94-112 7-25 (27)
81 1deb_A APC protein, adenomatou 27.4 93 0.0032 19.7 4.0 21 156-176 8-28 (54)
82 2zxx_A Geminin; coiled-coil, c 27.2 1E+02 0.0035 21.4 4.6 29 148-176 38-66 (79)
83 2wq1_A General control protein 26.8 95 0.0033 17.8 4.5 24 154-177 3-26 (33)
84 3vkg_A Dynein heavy chain, cyt 26.6 2.6E+02 0.0089 32.4 10.0 50 125-174 2014-2065(3245)
85 1zps_A PRA-CH, phosphoribosyl- 26.5 22 0.00077 27.5 1.2 37 17-53 54-100 (138)
86 3oja_B Anopheles plasmodium-re 26.0 3.9E+02 0.013 24.5 13.5 34 142-175 521-554 (597)
87 3nrf_A APAG protein; structura 25.7 20 0.00067 26.5 0.7 42 11-57 21-62 (106)
88 1deq_A Fibrinogen (alpha chain 25.4 3.7E+02 0.013 24.1 9.6 17 94-110 66-82 (390)
89 4gfh_A DNA topoisomerase 2; to 24.8 1.6E+02 0.0056 30.5 7.6 106 45-164 975-1147(1177)
90 1wlq_A Geminin; coiled-coil; 2 24.7 98 0.0034 21.7 4.1 25 149-173 43-67 (83)
91 1kaf_A Transcription regulator 24.3 19 0.00066 26.6 0.4 51 6-71 23-74 (108)
92 3a7p_A Autophagy protein 16; c 24.1 2.6E+02 0.0088 21.8 10.9 47 127-173 84-132 (152)
93 1t6f_A Geminin; coiled-coil, c 22.7 1.2E+02 0.0042 17.7 4.5 24 148-171 11-34 (37)
94 2v66_B Nuclear distribution pr 22.5 2.3E+02 0.008 20.8 8.8 19 154-172 52-70 (111)
95 2oa5_A Hypothetical protein BQ 22.5 2.3E+02 0.008 20.8 6.1 53 93-145 13-67 (110)
96 1fmh_B General control protein 22.5 1.1E+02 0.0038 17.0 3.8 27 152-178 2-28 (33)
97 1r8e_A Multidrug-efflux transp 22.3 1.7E+02 0.0059 24.0 6.2 48 121-175 63-110 (278)
98 3thf_A Protein shroom; coiled- 21.4 1.7E+02 0.0058 23.7 5.5 34 139-176 11-44 (190)
99 1q06_A Transcriptional regulat 21.3 2.5E+02 0.0087 20.7 7.1 53 121-174 57-109 (135)
100 3hvz_A Uncharacterized protein 21.1 45 0.0015 22.9 1.8 25 44-68 7-32 (78)
101 1nlw_A MAD protein, MAX dimeri 20.9 1.4E+02 0.0048 20.4 4.4 25 151-175 54-78 (80)
102 2vz4_A Tipal, HTH-type transcr 20.9 1.4E+02 0.0048 21.2 4.7 47 121-174 58-104 (108)
103 1i84_S Smooth muscle myosin he 20.6 4.4E+02 0.015 27.1 9.9 13 95-107 864-876 (1184)
104 3azd_A Short alpha-tropomyosin 20.6 48 0.0017 19.5 1.6 27 151-177 4-30 (37)
105 2zqm_A Prefoldin beta subunit 20.5 2.3E+02 0.008 20.0 7.3 41 137-178 71-111 (117)
106 2wvr_A Geminin; DNA replicatio 20.3 1.9E+02 0.0065 23.7 5.6 27 148-174 119-145 (209)
107 2p22_C Protein SRN2; endosome, 20.2 3.3E+02 0.011 21.9 7.2 10 94-103 40-49 (192)
108 3m9b_A Proteasome-associated A 20.1 1.9E+02 0.0063 24.6 5.8 42 126-172 55-96 (251)
109 1nkp_B MAX protein, MYC proto- 20.1 1.5E+02 0.0051 20.1 4.5 27 152-178 48-74 (83)
No 1
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=100.00 E-value=5.8e-40 Score=236.70 Aligned_cols=73 Identities=47% Similarity=0.845 Sum_probs=70.1
Q ss_pred CCccceeEEecCCCCccccccccccchhhhhhhhhcccCCceEEEEEecCCcccccccchhhhhhhhhcccch
Q 039982 2 GRGKIEIKKIENLNSRQVTFSKRRNGLLKKAKELSVLCDADVGVIVFSSTGKLYEFSSSSMEHILSRYSKGID 74 (253)
Q Consensus 2 gR~Ki~ikrIen~~~RqvTFsKRr~GL~KKA~ELSvLCdaevalIifS~~gkl~e~~s~sm~~iieRY~~~~~ 74 (253)
||+||+|++|||.++|||||+|||+||||||+|||||||||||||||||+||+|+|+|++|++||+||+.+++
T Consensus 1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~s~~~~~il~ry~~~~~ 73 (77)
T 1egw_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNE 73 (77)
T ss_dssp CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHC--
T ss_pred CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeCCCCCHHHHHHHHHhccC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999998765
No 2
>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A
Probab=100.00 E-value=2.8e-39 Score=238.74 Aligned_cols=73 Identities=47% Similarity=0.845 Sum_probs=71.7
Q ss_pred CCccceeEEecCCCCccccccccccchhhhhhhhhcccCCceEEEEEecCCcccccccchhhhhhhhhcccch
Q 039982 2 GRGKIEIKKIENLNSRQVTFSKRRNGLLKKAKELSVLCDADVGVIVFSSTGKLYEFSSSSMEHILSRYSKGID 74 (253)
Q Consensus 2 gR~Ki~ikrIen~~~RqvTFsKRr~GL~KKA~ELSvLCdaevalIifS~~gkl~e~~s~sm~~iieRY~~~~~ 74 (253)
||+||+|++|||.++|||||+|||+||||||+||||||||+||||||||+|++|+|+|++|..||+||+.+++
T Consensus 1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~s~~~~~il~rY~~~~~ 73 (90)
T 3p57_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNE 73 (90)
T ss_dssp CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHCCS
T ss_pred CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEeCCCCHHHHHHHHHhcCc
Confidence 8999999999999999999999999999999999999999999999999999999999999999999998776
No 3
>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1
Probab=100.00 E-value=1.2e-37 Score=233.84 Aligned_cols=72 Identities=49% Similarity=0.654 Sum_probs=69.9
Q ss_pred CCCccceeEEecCCCCccccccccccchhhhhhhhhcccCCceEEEEEecCCcccccccchhhhhhhhhccc
Q 039982 1 MGRGKIEIKKIENLNSRQVTFSKRRNGLLKKAKELSVLCDADVGVIVFSSTGKLYEFSSSSMEHILSRYSKG 72 (253)
Q Consensus 1 MgR~Ki~ikrIen~~~RqvTFsKRr~GL~KKA~ELSvLCdaevalIifS~~gkl~e~~s~sm~~iieRY~~~ 72 (253)
|||+||+|++|||.++|||||+|||+||||||+||||||||+||||||||+||+|+|+|++|..||+||...
T Consensus 16 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~sps~~~il~r~~G~ 87 (100)
T 1mnm_A 16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKFEPIVTQQEGR 87 (100)
T ss_dssp CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTTTTHHHHSHHHH
T ss_pred CCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcceecCCCHHHHHHHhhCC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999643
No 4
>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*
Probab=100.00 E-value=1.8e-37 Score=229.92 Aligned_cols=70 Identities=39% Similarity=0.593 Sum_probs=68.7
Q ss_pred CCCccceeEEecCCCCccccccccccchhhhhhhhhcccCCceEEEEEecCCcccccccchhhhhhhhhc
Q 039982 1 MGRGKIEIKKIENLNSRQVTFSKRRNGLLKKAKELSVLCDADVGVIVFSSTGKLYEFSSSSMEHILSRYS 70 (253)
Q Consensus 1 MgR~Ki~ikrIen~~~RqvTFsKRr~GL~KKA~ELSvLCdaevalIifS~~gkl~e~~s~sm~~iieRY~ 70 (253)
|||+||+|++|||.++|||||+|||+||||||+||||||||+||||||||+|++|+|+|++|..||++|.
T Consensus 10 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~s~~~~~~i~~~~ 79 (92)
T 1hbx_A 10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSET 79 (92)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEECGGGGGGTSSHH
T ss_pred CCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEecCCCHHHHHhhhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999874
No 5
>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1
Probab=100.00 E-value=7.1e-37 Score=231.04 Aligned_cols=69 Identities=39% Similarity=0.595 Sum_probs=68.0
Q ss_pred CCCccceeEEecCCCCccccccccccchhhhhhhhhcccCCceEEEEEecCCcccccccchhhhhhhhh
Q 039982 1 MGRGKIEIKKIENLNSRQVTFSKRRNGLLKKAKELSVLCDADVGVIVFSSTGKLYEFSSSSMEHILSRY 69 (253)
Q Consensus 1 MgR~Ki~ikrIen~~~RqvTFsKRr~GL~KKA~ELSvLCdaevalIifS~~gkl~e~~s~sm~~iieRY 69 (253)
|||+||+|++|||.++|||||+|||+||||||+||||||||+||||||||+|++|+|+|++|..||+++
T Consensus 9 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s~~~~~vi~~~ 77 (103)
T 1k6o_B 9 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSE 77 (103)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEEECGGGGGGTSSH
T ss_pred CCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeeecCccHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999984
No 6
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=91.13 E-value=1.9 Score=30.49 Aligned_cols=43 Identities=14% Similarity=0.261 Sum_probs=33.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039982 122 LSFKELQQLEHQLSEGMLSVKDMKEQVLLEQIRRSRLMEQKAMLENET 169 (253)
Q Consensus 122 Ls~~EL~~LE~~Le~sL~~IR~rK~qll~~qi~~Lk~Ke~~l~eeN~~ 169 (253)
+|++=|.+||..+..++..|- +|..+|++|+.|-..|.++|..
T Consensus 3 MS~ElleqLE~KIq~avdtI~-----lLqmEieELKekN~~L~~e~~e 45 (81)
T 2jee_A 3 MSLEVFEKLEAKVQQAIDTIT-----LLQMEIEELKEKNNSLSQEVQN 45 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 678889999999999998774 5666778888877776665555
No 7
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=88.27 E-value=4 Score=26.94 Aligned_cols=53 Identities=21% Similarity=0.295 Sum_probs=42.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039982 120 DGLSFKELQQLEHQLSEGMLSVKD--MKEQVLLEQIRRSRLMEQKAMLENETLRK 172 (253)
Q Consensus 120 ~~Ls~~EL~~LE~~Le~sL~~IR~--rK~qll~~qi~~Lk~Ke~~l~eeN~~L~~ 172 (253)
+..++.|..++.+.|-.+=.+|.. +-+.-+.+++..|+++.+.|+.||..|+.
T Consensus 8 gpit~qeylevK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~ 62 (63)
T 2w6a_A 8 GAVTLQEYLELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLRQ 62 (63)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcchHHHHHHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence 356888888888888877766653 44556789999999999999999999974
No 8
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=84.40 E-value=1.9 Score=44.42 Aligned_cols=26 Identities=19% Similarity=0.243 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039982 153 IRRSRLMEQKAMLENETLRKQMEELR 178 (253)
Q Consensus 153 i~~Lk~Ke~~l~eeN~~L~~~~~~~~ 178 (253)
-+.|+.|...|.+||..|++++.++.
T Consensus 1018 ~~~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1018 KHETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36888999999999999999988775
No 9
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=83.83 E-value=1.7 Score=30.10 Aligned_cols=26 Identities=31% Similarity=0.307 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039982 147 QVLLEQIRRSRLMEQKAMLENETLRK 172 (253)
Q Consensus 147 qll~~qi~~Lk~Ke~~l~eeN~~L~~ 172 (253)
+.|.++|.+|..|...|+.||..|+.
T Consensus 18 evLKe~I~EL~e~~~qLE~EN~~Lk~ 43 (78)
T 1dip_A 18 EILKEQIRELVEKNSQLERENTLLKT 43 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888888888888888877
No 10
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=81.86 E-value=6.3 Score=25.56 Aligned_cols=37 Identities=16% Similarity=0.161 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039982 139 LSVKDMKEQVLLEQIRRSRLMEQKAMLENETLRKQMEELRR 179 (253)
Q Consensus 139 ~~IR~rK~qll~~qi~~Lk~Ke~~l~eeN~~L~~~~~~~~~ 179 (253)
.+-|.||. ..++.|..++..|..+|..|..++..+..
T Consensus 14 ~rSR~RKk----~~~~~LE~~v~~L~~eN~~L~~~~~~L~~ 50 (55)
T 1dh3_A 14 RESRRKKK----EYVKSLENRVAVLENQNKTLIEELKALKD 50 (55)
T ss_dssp HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466665 44699999999999999999999988754
No 11
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=81.85 E-value=5.3 Score=24.46 Aligned_cols=26 Identities=19% Similarity=0.077 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039982 149 LLEQIRRSRLMEQKAMLENETLRKQM 174 (253)
Q Consensus 149 l~~qi~~Lk~Ke~~l~eeN~~L~~~~ 174 (253)
|.....+|..+...|+.||..||+.+
T Consensus 15 le~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 15 LENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 44557888999999999999999876
No 12
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=81.33 E-value=6.2 Score=26.33 Aligned_cols=39 Identities=13% Similarity=0.191 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039982 137 GMLSVKDMKEQVLLEQIRRSRLMEQKAMLENETLRKQMEELRR 179 (253)
Q Consensus 137 sL~~IR~rK~qll~~qi~~Lk~Ke~~l~eeN~~L~~~~~~~~~ 179 (253)
+-.+.|.||.+ .+..|..+...|..+|..|..++..+..
T Consensus 20 AArrsR~RK~~----~~~~Le~~v~~L~~eN~~L~~ev~~Lr~ 58 (63)
T 2dgc_A 20 AARRSRARKLQ----RMKQLEDKVEELLSKNYHLENEVARLKK 58 (63)
T ss_dssp HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777754 5699999999999999999999988754
No 13
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=76.48 E-value=24 Score=27.15 Aligned_cols=73 Identities=29% Similarity=0.312 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHhcC-----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039982 99 ALKDEYARLRLAYMRMNG-----QELDGLSFKELQQLEHQLSEGMLSVKDMKEQVLLEQIRRSRLMEQKAMLENETLRKQ 173 (253)
Q Consensus 99 kLk~ei~~Lq~~~r~l~G-----edL~~Ls~~EL~~LE~~Le~sL~~IR~rK~qll~~qi~~Lk~Ke~~l~eeN~~L~~~ 173 (253)
.|+++-+....+-+.++. -++++|+.++|+++-+.|-..+..+-+-|.-+ ..+...-.-|-+.|+.+
T Consensus 30 ~l~kE~e~k~eeKkkiLaER~~pL~id~ls~~~L~e~~keLh~~I~~LEeEKYDl--------E~kvkkq~yEI~dL~~r 101 (133)
T 1j1d_C 30 ELEREAEERRGEKGRALSTRAQPLELAGLGFAELQDLARQLHARVDKVDEERYDI--------EAKVTKNITEIADLTQK 101 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhH--------HHHHHHcchHHHHHHHH
Confidence 344444444444333332 47999999999999999999998888777544 44444445566667777
Q ss_pred HHHHhh
Q 039982 174 MEELRR 179 (253)
Q Consensus 174 ~~~~~~ 179 (253)
|.++.+
T Consensus 102 V~Dl~g 107 (133)
T 1j1d_C 102 IFDLRG 107 (133)
T ss_dssp HHHHC-
T ss_pred HHHHHc
Confidence 777643
No 14
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=75.67 E-value=9.3 Score=26.12 Aligned_cols=43 Identities=23% Similarity=0.355 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039982 136 EGMLSVKDMKEQVL---LEQIRRSRLMEQKAMLENETLRKQMEELR 178 (253)
Q Consensus 136 ~sL~~IR~rK~qll---~~qi~~Lk~Ke~~l~eeN~~L~~~~~~~~ 178 (253)
.+-..+|+||.+-| ..++..|......+..||..|+.++..+.
T Consensus 18 ~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~ 63 (70)
T 1gd2_E 18 AAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLE 63 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677776543 33555555555556677777777776554
No 15
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=74.70 E-value=18 Score=24.85 Aligned_cols=53 Identities=15% Similarity=0.219 Sum_probs=38.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039982 118 ELDGLSFKELQQLEHQLSEGMLSVKDMKEQVLLEQIRRSRLMEQKAMLENETLRKQMEEL 177 (253)
Q Consensus 118 dL~~Ls~~EL~~LE~~Le~sL~~IR~rK~qll~~qi~~Lk~Ke~~l~eeN~~L~~~~~~~ 177 (253)
.+++++. +.+|+..|......||.+-.. |+.|.+......++...|+.++...
T Consensus 14 ~~~~mgt--i~eLq~~L~~K~eELr~kd~~-----I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 14 SIEGRGS--LRDLQYALQEKIEELRQRDAL-----IDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp -----CH--HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hcccCCc--HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444443 888888899998888887543 6888888888888888898888665
No 16
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=73.79 E-value=13 Score=24.54 Aligned_cols=37 Identities=8% Similarity=0.145 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039982 139 LSVKDMKEQVLLEQIRRSRLMEQKAMLENETLRKQMEELRR 179 (253)
Q Consensus 139 ~~IR~rK~qll~~qi~~Lk~Ke~~l~eeN~~L~~~~~~~~~ 179 (253)
.+-|.||.+ .|..|+.+...|..+|..|..++..+..
T Consensus 15 ~rcR~rKk~----~~~~Le~~v~~L~~~n~~L~~ei~~L~~ 51 (63)
T 2wt7_A 15 AKCRNRRRE----LTDTLQAETDQLEDEKSALQTEIANLLK 51 (63)
T ss_dssp HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666654 4688999999999999999998877643
No 17
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=73.77 E-value=26 Score=27.04 Aligned_cols=19 Identities=16% Similarity=0.048 Sum_probs=10.6
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 039982 94 SAELNALKDEYARLRLAYM 112 (253)
Q Consensus 94 ~~e~~kLk~ei~~Lq~~~r 112 (253)
-.++.+++.+++.|+..+.
T Consensus 67 adEl~k~~~~~~~L~~~l~ 85 (138)
T 3hnw_A 67 ADDYFKAKKMADSLSLDIE 85 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455566666666555443
No 18
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=73.73 E-value=13 Score=24.24 Aligned_cols=37 Identities=11% Similarity=0.097 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039982 139 LSVKDMKEQVLLEQIRRSRLMEQKAMLENETLRKQMEELRR 179 (253)
Q Consensus 139 ~~IR~rK~qll~~qi~~Lk~Ke~~l~eeN~~L~~~~~~~~~ 179 (253)
.+.|.||.+ .++.|+.+...|..+|..|..++..+..
T Consensus 14 ~k~R~rKk~----~~~~Le~~~~~L~~~n~~L~~~i~~L~~ 50 (61)
T 1t2k_D 14 SRSRQKRKV----WVQSLEKKAEDLSSLNGQLQSEVTLLRN 50 (61)
T ss_dssp HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666655 4688888888999999999888877653
No 19
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=73.13 E-value=14 Score=24.26 Aligned_cols=39 Identities=18% Similarity=0.140 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039982 138 MLSVKDMKEQVLLEQIRRSRLMEQKAMLENETLRKQMEELRRS 180 (253)
Q Consensus 138 L~~IR~rK~qll~~qi~~Lk~Ke~~l~eeN~~L~~~~~~~~~~ 180 (253)
-.+-|.||.+ .++.|..+...|..+|..|..++..+...
T Consensus 13 A~k~R~rKk~----~~~~Le~~v~~L~~~n~~L~~~v~~L~~e 51 (62)
T 1jnm_A 13 ASKSRKRKLE----RIARLEEKVKTLKAQNSELASTANMLREQ 51 (62)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666654 46899999999999999999999877543
No 20
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=73.04 E-value=19 Score=26.21 Aligned_cols=29 Identities=24% Similarity=0.144 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039982 150 LEQIRRSRLMEQKAMLENETLRKQMEELR 178 (253)
Q Consensus 150 ~~qi~~Lk~Ke~~l~eeN~~L~~~~~~~~ 178 (253)
-.+|..|..+...|..||..|+++-+.-.
T Consensus 64 ~~~v~eLe~everL~~ENq~L~~e~~~~~ 92 (104)
T 3s9g_A 64 DARVRELELELDRLRAENLQLLTENELHR 92 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 46778888888888888888887755443
No 21
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=71.16 E-value=8.3 Score=24.85 Aligned_cols=28 Identities=14% Similarity=0.217 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039982 148 VLLEQIRRSRLMEQKAMLENETLRKQME 175 (253)
Q Consensus 148 ll~~qi~~Lk~Ke~~l~eeN~~L~~~~~ 175 (253)
.|..+.++|+.|...|.+++..|+.++.
T Consensus 23 aLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 23 LLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556778888888888888888888764
No 22
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=70.66 E-value=43 Score=31.19 Aligned_cols=31 Identities=19% Similarity=0.273 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039982 149 LLEQIRRSRLMEQKAMLENETLRKQMEELRR 179 (253)
Q Consensus 149 l~~qi~~Lk~Ke~~l~eeN~~L~~~~~~~~~ 179 (253)
+..+++..+++...+.+|+..+++++.++..
T Consensus 549 le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~ 579 (597)
T 3oja_B 549 LEKQLDNKRAKQAELRQETSLKRQKVKQLEA 579 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555666777777777777766543
No 23
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=70.37 E-value=18 Score=23.96 Aligned_cols=38 Identities=13% Similarity=0.131 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039982 138 MLSVKDMKEQVLLEQIRRSRLMEQKAMLENETLRKQMEELRR 179 (253)
Q Consensus 138 L~~IR~rK~qll~~qi~~Lk~Ke~~l~eeN~~L~~~~~~~~~ 179 (253)
-.+.|.+|. +.++.|..+...|..+|..|..++..+..
T Consensus 14 A~R~R~KKk----~~~~~le~~~~~L~~~N~~L~~~i~~L~~ 51 (63)
T 1ci6_A 14 ATRYRQKKR----AEQEALTGECKELEKKNEALKERADSLAK 51 (63)
T ss_dssp HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555553 45678888888888888888888776644
No 24
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=67.93 E-value=44 Score=27.00 Aligned_cols=72 Identities=29% Similarity=0.321 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHhcC-----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039982 99 ALKDEYARLRLAYMRMNG-----QELDGLSFKELQQLEHQLSEGMLSVKDMKEQVLLEQIRRSRLMEQKAMLENETLRKQ 173 (253)
Q Consensus 99 kLk~ei~~Lq~~~r~l~G-----edL~~Ls~~EL~~LE~~Le~sL~~IR~rK~qll~~qi~~Lk~Ke~~l~eeN~~L~~~ 173 (253)
.|+++-+....+-+.++. -+|++|+.++|+++-..|-..+..+-+-|.-+ ..+...-.-|-+.|+.+
T Consensus 30 ~L~~E~e~k~eEKkkiLaER~kPLnid~Lse~~L~e~ckELh~~I~~LEeEKYDl--------E~kvkkqdyEI~dL~~r 101 (180)
T 1j1e_C 30 ELEREAEERRGEKGRALSTRAQPLELAGLGFAELQDLARQLHARVDKVDEERYDI--------EAKVTKNITEIADLTQK 101 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhH--------HHHHHhcchhHHHHHHH
Confidence 344444444444333332 48999999999999999999999888877654 33333333444555555
Q ss_pred HHHHh
Q 039982 174 MEELR 178 (253)
Q Consensus 174 ~~~~~ 178 (253)
|.++.
T Consensus 102 V~DLr 106 (180)
T 1j1e_C 102 IFDLR 106 (180)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 55553
No 25
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=65.93 E-value=10 Score=22.04 Aligned_cols=27 Identities=11% Similarity=0.251 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039982 153 IRRSRLMEQKAMLENETLRKQMEELRR 179 (253)
Q Consensus 153 i~~Lk~Ke~~l~eeN~~L~~~~~~~~~ 179 (253)
+..|..|+..|..+|..|..++..+..
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV~rLk~ 29 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEVXRLKX 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 566778888888888888888776643
No 26
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=64.04 E-value=26 Score=24.85 Aligned_cols=27 Identities=30% Similarity=0.325 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039982 153 IRRSRLMEQKAMLENETLRKQMEELRR 179 (253)
Q Consensus 153 i~~Lk~Ke~~l~eeN~~L~~~~~~~~~ 179 (253)
...++.+...|..||..|+.+|+.+..
T Consensus 38 ~~e~~~r~~~Le~EN~~Lr~~v~~L~~ 64 (87)
T 1hjb_A 38 NLETQHKVLELTAENERLQKKVEQLSR 64 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666777777777777777766543
No 27
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=63.39 E-value=47 Score=25.31 Aligned_cols=58 Identities=16% Similarity=0.135 Sum_probs=41.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039982 121 GLSFKELQQLEHQLSEGMLSVKDMKEQVLLEQIRRSRLMEQKAMLENETLRKQMEELRR 179 (253)
Q Consensus 121 ~Ls~~EL~~LE~~Le~sL~~IR~rK~qll~~qi~~Lk~Ke~~l~eeN~~L~~~~~~~~~ 179 (253)
+++++|+..+-...+.+-..+..+ .+++.++++.+.++...|...-..|..++.....
T Consensus 59 G~sL~eIk~~l~~~~~~~~~~~~~-~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~ 116 (142)
T 3gp4_A 59 GLSIEALIDYLALFREGEHTLEAR-AELLKKQRIELKNRIDVMQEALDRLDFKIDNYDT 116 (142)
T ss_dssp TCCHHHHHHHHHHHHHCGGGHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhccCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999988877665543333333 4577888888888888888888888887766543
No 28
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=62.92 E-value=30 Score=24.01 Aligned_cols=39 Identities=23% Similarity=0.250 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039982 137 GMLSVKDMKEQVLLEQIRRSRLMEQKAMLENETLRKQMEELRR 179 (253)
Q Consensus 137 sL~~IR~rK~qll~~qi~~Lk~Ke~~l~eeN~~L~~~~~~~~~ 179 (253)
+.++-|.++.+- ...++.+...|..||..|+.+|..+..
T Consensus 26 AakrSR~krk~r----~~e~~~r~~~L~~eN~~L~~~v~~L~~ 64 (78)
T 1gu4_A 26 AVRKSRDKAKMR----NLETQHKVLELTAENERLQKKVEQLSR 64 (78)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445444332 466777888888888888888877654
No 29
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=61.64 E-value=13 Score=21.67 Aligned_cols=26 Identities=8% Similarity=-0.041 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039982 143 DMKEQVLLEQIRRSRLMEQKAMLENE 168 (253)
Q Consensus 143 ~rK~qll~~qi~~Lk~Ke~~l~eeN~ 168 (253)
.||++-....|++|+++...|.++-.
T Consensus 6 RrKn~a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 6 RRKNDTHQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhHhhHHHHHHHHHHHHHHHH
Confidence 36777778888888877666665543
No 30
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=61.33 E-value=38 Score=28.49 Aligned_cols=52 Identities=19% Similarity=0.174 Sum_probs=33.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039982 123 SFKELQQLEHQLSEGMLSVKDMKEQV--LLEQIRRSRLMEQKAMLENETLRKQM 174 (253)
Q Consensus 123 s~~EL~~LE~~Le~sL~~IR~rK~ql--l~~qi~~Lk~Ke~~l~eeN~~L~~~~ 174 (253)
+.+|+..|.+.++..-.++...-+++ ++++++.++.....+...-..+...+
T Consensus 88 ~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l 141 (256)
T 3na7_A 88 SERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLA 141 (256)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999998887777776665554 34666666555554444444444443
No 31
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=60.72 E-value=12 Score=21.63 Aligned_cols=27 Identities=11% Similarity=0.238 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039982 153 IRRSRLMEQKAMLENETLRKQMEELRR 179 (253)
Q Consensus 153 i~~Lk~Ke~~l~eeN~~L~~~~~~~~~ 179 (253)
+..|..|+..|..+|..|..++..+..
T Consensus 2 M~QLE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 346778888889999999888877653
No 32
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=59.87 E-value=9.8 Score=22.26 Aligned_cols=21 Identities=19% Similarity=0.268 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHh
Q 039982 94 SAELNALKDEYARLRLAYMRM 114 (253)
Q Consensus 94 ~~e~~kLk~ei~~Lq~~~r~l 114 (253)
+++++.|++++..|+.++|.+
T Consensus 13 qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 13 QQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HhhHHHHHHHHHHHHHHHHhc
Confidence 788999999999999988764
No 33
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=58.00 E-value=36 Score=25.13 Aligned_cols=53 Identities=17% Similarity=0.193 Sum_probs=41.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039982 117 QELDGLSFKELQQLEHQLSEGMLSVKDMKEQVLLEQIRRSRLMEQKAMLENETLRKQMEEL 177 (253)
Q Consensus 117 edL~~Ls~~EL~~LE~~Le~sL~~IR~rK~qll~~qi~~Lk~Ke~~l~eeN~~L~~~~~~~ 177 (253)
-++++|+.++|+++-+.|-..+..+-+-|.- |..+...-.-|-+.|+.++.++
T Consensus 37 L~id~l~~~~L~e~~keLh~~I~~lEeEKYD--------lE~kv~kq~yEI~eL~~rV~dl 89 (107)
T 1ytz_T 37 LNIDHLNEDKLRDKAKELWDWLYQLQTEKYD--------FAEQIKRKKYEIVTLRNRIDQA 89 (107)
T ss_dssp CCCSSSCSSHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHhh--------HHHHHHhhhhHHHHHHHHHHHh
Confidence 4799999999999999999999888777754 4455555555667777777776
No 34
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=57.48 E-value=28 Score=25.39 Aligned_cols=21 Identities=24% Similarity=0.237 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 039982 157 RLMEQKAMLENETLRKQMEEL 177 (253)
Q Consensus 157 k~Ke~~l~eeN~~L~~~~~~~ 177 (253)
++....|+.|+..|+..+..+
T Consensus 74 ~~~~e~Lq~E~erLr~~v~~l 94 (100)
T 1go4_E 74 REDHSQLQAECERLRGLLRAM 94 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455666777777666443
No 35
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=55.20 E-value=57 Score=23.66 Aligned_cols=86 Identities=23% Similarity=0.253 Sum_probs=52.8
Q ss_pred ccccchhhhhhhhhcccchhhhhcccCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHH
Q 039982 56 EFSSSSMEHILSRYSKGIDLECQTNRNEEHGVPELPPKSAELNALKDEYARLRLAYMRMNGQELDGLSFKELQQLEHQLS 135 (253)
Q Consensus 56 e~~s~sm~~iieRY~~~~~~~~~~~~~~~~~~~~lq~~~~e~~kLk~ei~~Lq~~~r~l~GedL~~Ls~~EL~~LE~~Le 135 (253)
+|-+-..-.+.+||..-.- ..+.. +.+-+++-.|.+.++.++.+.+. |+++....
T Consensus 9 eFl~KdFSe~YE~~h~ErL----~~mSK-------qELIqEYl~LE~~~s~le~e~~r-------------lr~~~~~~- 63 (104)
T 3s9g_A 9 EFLQRDFSETYERYHTESL----QNMSK-------QELIKEYLELEKSLSRMEDENNR-------------LRLESKRL- 63 (104)
T ss_dssp -----CCHHHHHHHHHHHH----HTSCH-------HHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHH----HhccH-------HHHHHHHHHHHHHHHHHHHHHHH-------------HHHHhccc-
Confidence 4666667777888764222 11111 23467788888888888776554 22222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039982 136 EGMLSVKDMKEQVLLEQIRRSRLMEQKAMLENETLRKQ 173 (253)
Q Consensus 136 ~sL~~IR~rK~qll~~qi~~Lk~Ke~~l~eeN~~L~~~ 173 (253)
..+-+-|..+++.|+.....|..||...+++
T Consensus 64 -------~~~v~eLe~everL~~ENq~L~~e~~~~~~~ 94 (104)
T 3s9g_A 64 -------DARVRELELELDRLRAENLQLLTENELHRQQ 94 (104)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred -------hhhHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 3444557788899999999999999999875
No 36
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=55.08 E-value=20 Score=21.06 Aligned_cols=26 Identities=8% Similarity=0.167 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039982 153 IRRSRLMEQKAMLENETLRKQMEELR 178 (253)
Q Consensus 153 i~~Lk~Ke~~l~eeN~~L~~~~~~~~ 178 (253)
+..|..|+.+|..+|..|..++..+.
T Consensus 3 MnQLE~KVEeLl~~~~~Le~eV~RLk 28 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKNKVARLK 28 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34556666666666666666665543
No 37
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=54.21 E-value=22 Score=20.61 Aligned_cols=26 Identities=0% Similarity=-0.046 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039982 153 IRRSRLMEQKAMLENETLRKQMEELR 178 (253)
Q Consensus 153 i~~Lk~Ke~~l~eeN~~L~~~~~~~~ 178 (253)
+..|..|+..|..+|..|..++..+.
T Consensus 3 MnQLEdKVEeLl~~~~~Le~EV~RLk 28 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXENEXARIX 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 45677778888888888888776654
No 38
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=53.81 E-value=37 Score=24.99 Aligned_cols=52 Identities=15% Similarity=0.224 Sum_probs=37.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039982 118 ELDGLSFKELQQLEHQLSEGMLSVKDMKEQVLLEQIRRSRLMEQKAMLENETLRKQMEEL 177 (253)
Q Consensus 118 dL~~Ls~~EL~~LE~~Le~sL~~IR~rK~qll~~qi~~Lk~Ke~~l~eeN~~L~~~~~~~ 177 (253)
++++|+.++|+.+-..|-..+..+-+-|.-+ ..+...-.-|-+.|+.++.++
T Consensus 38 ~id~l~~~~L~e~~keLh~~I~~LEeEKYDl--------E~kv~kq~yEI~eL~~rV~dl 89 (106)
T 1j1d_B 38 AIDHLNEDQLREKAKELWQTIYNLEAEKFDL--------QEKFKQQKYEINVLRNRINDN 89 (106)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhhhhH--------HHHHHhhhHHHHHHHHHHHHh
Confidence 7999999999999999999999888877554 333333344555566666554
No 39
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=53.79 E-value=21 Score=26.13 Aligned_cols=28 Identities=21% Similarity=0.183 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039982 151 EQIRRSRLMEQKAMLENETLRKQMEELR 178 (253)
Q Consensus 151 ~qi~~Lk~Ke~~l~eeN~~L~~~~~~~~ 178 (253)
+++..|+++...|..||..|++.+..+.
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE 39 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLE 39 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888888888888876653
No 40
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=53.08 E-value=91 Score=25.31 Aligned_cols=26 Identities=23% Similarity=0.116 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039982 152 QIRRSRLMEQKAMLENETLRKQMEEL 177 (253)
Q Consensus 152 qi~~Lk~Ke~~l~eeN~~L~~~~~~~ 177 (253)
+|..|++....|...+..|..++.++
T Consensus 89 ~~~~Lq~el~~l~~~~~~l~~~ireL 114 (189)
T 2v71_A 89 QVSVLEDDLSQTRAIKEQLHKYVREL 114 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555555555555443
No 41
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=52.78 E-value=74 Score=24.30 Aligned_cols=57 Identities=11% Similarity=0.194 Sum_probs=40.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039982 121 GLSFKELQQLEHQLSEGMLSVKDMKEQVLLEQIRRSRLMEQKAMLENETLRKQMEELR 178 (253)
Q Consensus 121 ~Ls~~EL~~LE~~Le~sL~~IR~rK~qll~~qi~~Lk~Ke~~l~eeN~~L~~~~~~~~ 178 (253)
+++++|+..+-.....+-..+.. ..+++.+++..+.++...|...-..|..++....
T Consensus 73 G~sL~eIk~~l~~~~~~~~~~~~-~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~ 129 (148)
T 3gpv_A 73 GMPIQKIKQFIDWSMEGDSTILH-RLKLMKQQEANVLQLIQDTEKNLKKIQQKIAKYE 129 (148)
T ss_dssp TCCHHHHHHHHHHHHHCGGGHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHhhhcCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899988887655444333333 3457888888888888888888888888876653
No 42
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=50.93 E-value=81 Score=24.13 Aligned_cols=51 Identities=14% Similarity=0.147 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039982 127 LQQLEHQLSEGMLSVKDMKEQVLL--EQIRRSRLMEQKAMLENETLRKQMEEL 177 (253)
Q Consensus 127 L~~LE~~Le~sL~~IR~rK~qll~--~qi~~Lk~Ke~~l~eeN~~L~~~~~~~ 177 (253)
...|+.+++.--+.+-+-|.++.. .+++.++++...|.+++..|..++..+
T Consensus 77 ~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~l 129 (138)
T 3hnw_A 77 ADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKL 129 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555443 334555555566666666666665544
No 43
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=50.72 E-value=51 Score=23.08 Aligned_cols=32 Identities=16% Similarity=0.231 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039982 145 KEQVLLEQIRRSRLMEQKAMLENETLRKQMEE 176 (253)
Q Consensus 145 K~qll~~qi~~Lk~Ke~~l~eeN~~L~~~~~~ 176 (253)
|-+-..+.|.-|+-....|.++|..|..+.++
T Consensus 14 KIq~avdtI~lLqmEieELKekN~~L~~e~~e 45 (81)
T 2jee_A 14 KVQQAIDTITLLQMEIEELKEKNNSLSQEVQN 45 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556666666666666666666665554
No 44
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=50.25 E-value=20 Score=19.71 Aligned_cols=19 Identities=32% Similarity=0.347 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 039982 160 EQKAMLENETLRKQMEELR 178 (253)
Q Consensus 160 e~~l~eeN~~L~~~~~~~~ 178 (253)
...|..||++|+.+++++-
T Consensus 8 lasleaenkqlkakveell 26 (31)
T 1p9i_A 8 LASLEAENKQLKAKVEELL 26 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4567889999999988763
No 45
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=49.47 E-value=36 Score=19.60 Aligned_cols=25 Identities=0% Similarity=-0.000 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 039982 154 RRSRLMEQKAMLENETLRKQMEELR 178 (253)
Q Consensus 154 ~~Lk~Ke~~l~eeN~~L~~~~~~~~ 178 (253)
..|..|+..|..+|..|..++..+.
T Consensus 3 nQLEdKvEeLl~~~~~Le~EV~RLk 27 (33)
T 3c3g_A 3 KXIEXKLXEIXSKXYHXENXLARIK 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4566777777778888877776654
No 46
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=48.59 E-value=70 Score=22.73 Aligned_cols=72 Identities=17% Similarity=0.144 Sum_probs=44.2
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039982 91 PPKSAELNALKDEYARLRLAYMRMNGQELDGLSFKELQQLEHQLSEGMLSVKDMKEQVLLEQIRRSRLMEQKAMLENETL 170 (253)
Q Consensus 91 q~~~~e~~kLk~ei~~Lq~~~r~l~GedL~~Ls~~EL~~LE~~Le~sL~~IR~rK~qll~~qi~~Lk~Ke~~l~eeN~~L 170 (253)
|.++..++..=.++..|+.+++.+.. ++..+.. +-..+-..++..+|..|+++...+..++..|
T Consensus 12 q~LNdRlAsyIdKVR~LEqqN~~Le~---------~i~~l~~-------~~~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l 75 (93)
T 3s4r_A 12 QELNDRFANLIDKVRFLEQQNKILLA---------ELEQLKG-------QGKSRLGDLYEEEMRELRRQVDQLTNDKARV 75 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHhh-------ccCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555544321 1222211 1123444578889999999999999999998
Q ss_pred HHHHHHHh
Q 039982 171 RKQMEELR 178 (253)
Q Consensus 171 ~~~~~~~~ 178 (253)
..++..+.
T Consensus 76 ~~e~dnl~ 83 (93)
T 3s4r_A 76 EVERDNLA 83 (93)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88876553
No 47
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=47.51 E-value=48 Score=21.78 Aligned_cols=31 Identities=16% Similarity=0.072 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039982 146 EQVLLEQIRRSRLMEQKAMLENETLRKQMEE 176 (253)
Q Consensus 146 ~qll~~qi~~Lk~Ke~~l~eeN~~L~~~~~~ 176 (253)
.+-|..+...|+.+...|..|+..|+.-|.+
T Consensus 32 ~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~e 62 (63)
T 1ci6_A 32 CKELEKKNEALKERADSLAKEIQYLKDLIEE 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445566777788888888888888776543
No 48
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=47.14 E-value=69 Score=22.23 Aligned_cols=56 Identities=9% Similarity=0.139 Sum_probs=36.4
Q ss_pred CCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039982 121 GLSFKELQQLEHQLSEGML-SVKDMKEQVLLEQIRRSRLMEQKAMLENETLRKQMEEL 177 (253)
Q Consensus 121 ~Ls~~EL~~LE~~Le~sL~-~IR~rK~qll~~qi~~Lk~Ke~~l~eeN~~L~~~~~~~ 177 (253)
|+|++|+..+=......-. .+ ..-..++.+++..+.++...|..--..|...+...
T Consensus 16 GfsL~eIk~~l~~~~~~~~~~~-~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~~~~~ 72 (99)
T 1q08_A 16 GFSLESIRELLSIRIDPEHHTC-QESKGIVQERLQEVEARIAELQSMQRSLQRLNDAC 72 (99)
T ss_dssp TCCHHHHHHHHHHHHCGGGCBH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHhCCCcccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6888898887654332111 11 23345778888888888888877777777766544
No 49
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=46.78 E-value=84 Score=24.70 Aligned_cols=48 Identities=15% Similarity=0.182 Sum_probs=34.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039982 123 SFKELQQLEHQLSEGMLSVKDMKEQVLLEQIRRSRLMEQKAMLENETLRK 172 (253)
Q Consensus 123 s~~EL~~LE~~Le~sL~~IR~rK~qll~~qi~~Lk~Ke~~l~eeN~~L~~ 172 (253)
|+.|.+.||..-...+.+|+.++.+| +++...+.--+.|.+.|+.+..
T Consensus 3 s~qe~~~Le~Ek~~~~~rI~~K~~~L--qeL~~Q~vafknLv~RN~~~e~ 50 (155)
T 2aze_A 3 FAQECQNLEVERQRRLERIKQKQSQL--QELILQQIAFKNLVQRNRHAEQ 50 (155)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHh
Confidence 67889999999999999999887664 2233333334677788877765
No 50
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=46.78 E-value=1.9e+02 Score=27.23 Aligned_cols=43 Identities=9% Similarity=0.125 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039982 133 QLSEGMLSVKDMKEQVLLEQIRRSRLMEQKAMLENETLRKQMEE 176 (253)
Q Consensus 133 ~Le~sL~~IR~rK~qll~~qi~~Lk~Ke~~l~eeN~~L~~~~~~ 176 (253)
.|+..+..|+.+-+..+ .+|..||.-...+..+-++|...|..
T Consensus 114 ELRRrIqyLKekVdnQl-snIrvLQsnLedq~~kIQRLEvDIdi 156 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKV-QHIQLLQKNVRAQLVDMKRLEVDIDI 156 (562)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666666 77777777777777777777666554
No 51
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=46.11 E-value=49 Score=20.18 Aligned_cols=37 Identities=27% Similarity=0.240 Sum_probs=21.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039982 122 LSFKELQQLEHQLSEGMLSVKDMKEQVLLEQIRRSRLMEQKAMLE 166 (253)
Q Consensus 122 Ls~~EL~~LE~~Le~sL~~IR~rK~qll~~qi~~Lk~Ke~~l~ee 166 (253)
+|-+||.|=-..++.-+..+++ +|..||+|.+.|.+.
T Consensus 2 ~tk~~l~qkI~kVdrEI~Kte~--------kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 2 LSKEELIQNMDRVDREITMVEQ--------QISKLKKKQQQLEEE 38 (42)
T ss_dssp CSSSHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHh
Confidence 4445555554555544444443 467788887777664
No 52
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=45.53 E-value=55 Score=20.65 Aligned_cols=33 Identities=24% Similarity=0.448 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039982 124 FKELQQLEHQLSEGMLSVKDMKEQVLLEQIRRSRLMEQKA 163 (253)
Q Consensus 124 ~~EL~~LE~~Le~sL~~IR~rK~qll~~qi~~Lk~Ke~~l 163 (253)
+++|..||+ ..-.-|++++.+.|..++++..++
T Consensus 12 ld~l~~LEk-------qF~~LkEqlY~ERl~ql~~~Leel 44 (49)
T 2xus_A 12 VSEMLDLEK-------QFSELKEKLFRERLSQLRLRLEEV 44 (49)
T ss_dssp HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777773 345567888888888888776554
No 53
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=45.11 E-value=33 Score=19.88 Aligned_cols=26 Identities=0% Similarity=0.174 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039982 153 IRRSRLMEQKAMLENETLRKQMEELR 178 (253)
Q Consensus 153 i~~Lk~Ke~~l~eeN~~L~~~~~~~~ 178 (253)
+..|..|+..|..+|..|..++..+.
T Consensus 3 MnQLEdKvEeLl~~~~~L~~EV~RLk 28 (34)
T 2bni_A 3 MKQIEDKLEEILSKGHHICNELARIK 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHccHHHHHHHHHHH
Confidence 35566677777777777777776554
No 54
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=42.92 E-value=37 Score=27.52 Aligned_cols=30 Identities=20% Similarity=0.304 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039982 148 VLLEQIRRSRLMEQKAMLENETLRKQMEEL 177 (253)
Q Consensus 148 ll~~qi~~Lk~Ke~~l~eeN~~L~~~~~~~ 177 (253)
-+++.+..|+.+...|.++|.+|+.+-...
T Consensus 149 ~~ld~~~~L~~~n~~LqkeNeRL~~E~n~~ 178 (184)
T 3w03_C 149 YCLDTIAENQAKNEHLQKENERLLRDWNDV 178 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999999999999886554
No 55
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=42.59 E-value=65 Score=20.81 Aligned_cols=27 Identities=11% Similarity=-0.102 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039982 148 VLLEQIRRSRLMEQKAMLENETLRKQM 174 (253)
Q Consensus 148 ll~~qi~~Lk~Ke~~l~eeN~~L~~~~ 174 (253)
-|..+...|+.+...|.+|+..|+..+
T Consensus 33 ~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 33 DLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445566777777777777777777654
No 56
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=41.77 E-value=36 Score=20.20 Aligned_cols=20 Identities=25% Similarity=0.067 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 039982 151 EQIRRSRLMEQKAMLENETL 170 (253)
Q Consensus 151 ~qi~~Lk~Ke~~l~eeN~~L 170 (253)
+||..|+.|...|.+|.-.|
T Consensus 15 eQi~~l~~kl~~LkeEKHQL 34 (38)
T 2l5g_A 15 EQILKLEEKLLALQEEKHQL 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555554444
No 57
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=40.53 E-value=2.6e+02 Score=28.71 Aligned_cols=16 Identities=38% Similarity=0.638 Sum_probs=7.9
Q ss_pred hHHHHHHHHHHHHHHH
Q 039982 94 SAELNALKDEYARLRL 109 (253)
Q Consensus 94 ~~e~~kLk~ei~~Lq~ 109 (253)
..|+..|+++++.++.
T Consensus 959 ~~e~~~L~~~l~~le~ 974 (1080)
T 2dfs_A 959 STETEKLRSDVERLRM 974 (1080)
T ss_dssp HHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455555555544443
No 58
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=39.68 E-value=31 Score=27.88 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 039982 151 EQIRRSRLMEQKAMLENETLRKQ 173 (253)
Q Consensus 151 ~qi~~Lk~Ke~~l~eeN~~L~~~ 173 (253)
++|..|+.+...|++||.+|..+
T Consensus 161 ~~i~~L~a~N~hLqkENeRL~~e 183 (186)
T 3q4f_C 161 DTIAENQAKNEHLQKENERLLRD 183 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 56788999999999999999875
No 59
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=39.38 E-value=35 Score=23.48 Aligned_cols=28 Identities=14% Similarity=0.082 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039982 150 LEQIRRSRLMEQKAMLENETLRKQMEEL 177 (253)
Q Consensus 150 ~~qi~~Lk~Ke~~l~eeN~~L~~~~~~~ 177 (253)
.+++..|+.....|..+|..|..++..+
T Consensus 53 ~~~~~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 53 RRKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445556666666677777777776543
No 60
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=39.35 E-value=47 Score=19.24 Aligned_cols=26 Identities=12% Similarity=0.093 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039982 153 IRRSRLMEQKAMLENETLRKQMEELR 178 (253)
Q Consensus 153 i~~Lk~Ke~~l~eeN~~L~~~~~~~~ 178 (253)
+..|..|+.+|..+|..|..++..+.
T Consensus 3 MnQLEdkVEeLl~~~~~Le~eV~RL~ 28 (34)
T 2hy6_A 3 VKQLADAVEELASANYHLANAVARLA 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34566777777777777777766553
No 61
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=38.68 E-value=34 Score=20.06 Aligned_cols=25 Identities=12% Similarity=0.076 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 039982 154 RRSRLMEQKAMLENETLRKQMEELR 178 (253)
Q Consensus 154 ~~Lk~Ke~~l~eeN~~L~~~~~~~~ 178 (253)
..|..|+..|..+|..|..++..+.
T Consensus 4 nQLE~kVEeLl~~~~~Le~EV~RL~ 28 (36)
T 1kd8_A 4 KQLEAEVEEIESEVWHLENEVARLE 28 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4455566666666666666555443
No 62
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=37.78 E-value=69 Score=21.66 Aligned_cols=22 Identities=14% Similarity=-0.091 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 039982 149 LLEQIRRSRLMEQKAMLENETL 170 (253)
Q Consensus 149 l~~qi~~Lk~Ke~~l~eeN~~L 170 (253)
+..++..|+.....|..||..|
T Consensus 48 l~~en~~Lr~~i~~L~~El~~l 69 (70)
T 1gd2_E 48 TTLENDQLRQKVRQLEEELRIL 69 (70)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 5677777777777777777665
No 63
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=37.70 E-value=51 Score=19.09 Aligned_cols=27 Identities=0% Similarity=0.177 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039982 153 IRRSRLMEQKAMLENETLRKQMEELRR 179 (253)
Q Consensus 153 i~~Lk~Ke~~l~eeN~~L~~~~~~~~~ 179 (253)
+..|..|+..|..+|..|..++..+..
T Consensus 3 M~QLEdKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 3 MKQIEDKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 355677788888888888887766543
No 64
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=36.75 E-value=65 Score=22.59 Aligned_cols=25 Identities=20% Similarity=0.231 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 039982 154 RRSRLMEQKAMLENETLRKQMEELR 178 (253)
Q Consensus 154 ~~Lk~Ke~~l~eeN~~L~~~~~~~~ 178 (253)
..+......|..+|..|+.++.++.
T Consensus 62 ~~l~~~~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 62 QKLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444557778888888887663
No 65
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=35.74 E-value=52 Score=22.70 Aligned_cols=28 Identities=29% Similarity=0.284 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039982 151 EQIRRSRLMEQKAMLENETLRKQMEELR 178 (253)
Q Consensus 151 ~qi~~Lk~Ke~~l~eeN~~L~~~~~~~~ 178 (253)
+=|..|+.....|.+++..|+..+.+..
T Consensus 50 ~YI~~Lq~~~~~L~~e~~~L~~~~~~~~ 77 (82)
T 1am9_A 50 DYIRFLQHSNQKLKQENLSLRTAVHKSK 77 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4467788888999999999999887654
No 66
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=35.37 E-value=29 Score=18.63 Aligned_cols=16 Identities=19% Similarity=0.412 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 039982 162 KAMLENETLRKQMEEL 177 (253)
Q Consensus 162 ~l~eeN~~L~~~~~~~ 177 (253)
.|.+.|.+|++++..+
T Consensus 4 rlkqknarlkqeiaal 19 (28)
T 3ra3_B 4 RLKQKNARLKQEIAAL 19 (28)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHH
Confidence 3445555555555443
No 67
>1ytz_I Troponin I; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.2 PDB: 2w49_2 2w4u_2 1yv0_I 1vdi_A 1vdj_A
Probab=35.21 E-value=1.4e+02 Score=24.03 Aligned_cols=73 Identities=26% Similarity=0.302 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHhcC-----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039982 98 NALKDEYARLRLAYMRMNG-----QELDGLSFKELQQLEHQLSEGMLSVKDMKEQVLLEQIRRSRLMEQKAMLENETLRK 172 (253)
Q Consensus 98 ~kLk~ei~~Lq~~~r~l~G-----edL~~Ls~~EL~~LE~~Le~sL~~IR~rK~qll~~qi~~Lk~Ke~~l~eeN~~L~~ 172 (253)
..|+++.+....+-+.++. -+|++ +.++|+++-..|-..+..+-+-|.- |..+...-.-|-+.|+.
T Consensus 27 e~L~~E~e~k~eeKkkiLaER~kPLnid~-se~~L~e~ckELh~~I~~LEeEKYD--------lE~kvkkq~yEI~dL~~ 97 (182)
T 1ytz_I 27 TEIEKEAAAKEVEKQNYLAEHSPPLSLPG-SMQELQELSKKLHAKIDSVDEERYD--------TEVKLQKTNKELEDLSQ 97 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCCCCCCC-SHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHhh--------HHHHHHhhhHHHHHHHH
Confidence 3355555444444344433 47888 9999999999999999887777754 44555555566667777
Q ss_pred HHHHHhh
Q 039982 173 QMEELRR 179 (253)
Q Consensus 173 ~~~~~~~ 179 (253)
+|.++.+
T Consensus 98 rVnDLrG 104 (182)
T 1ytz_I 98 KLFDLRG 104 (182)
T ss_dssp TTGGGTC
T ss_pred HHHHHHh
Confidence 7766643
No 68
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=34.51 E-value=1.8e+02 Score=23.47 Aligned_cols=18 Identities=6% Similarity=-0.001 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 039982 149 LLEQIRRSRLMEQKAMLE 166 (253)
Q Consensus 149 l~~qi~~Lk~Ke~~l~ee 166 (253)
+..+++.++.|......+
T Consensus 68 L~~E~e~~k~K~~~~~~e 85 (189)
T 2v71_A 68 LKYEVEALKEKLEHQYAQ 85 (189)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445566666655555444
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=34.17 E-value=2.6e+02 Score=25.13 Aligned_cols=26 Identities=23% Similarity=0.114 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039982 152 QIRRSRLMEQKAMLENETLRKQMEEL 177 (253)
Q Consensus 152 qi~~Lk~Ke~~l~eeN~~L~~~~~~~ 177 (253)
..+..+..+..+.++|.+++..+.++
T Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (487)
T 3oja_A 436 DWDMYQHKETQLAEENARLKKLNGEA 461 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHhhhhhhhhhhh
Confidence 34556666677777777777766554
No 70
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=33.92 E-value=1.1e+02 Score=20.90 Aligned_cols=31 Identities=13% Similarity=0.130 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039982 150 LEQIRRSRLMEQKAMLENETLRKQMEELRRS 180 (253)
Q Consensus 150 ~~qi~~Lk~Ke~~l~eeN~~L~~~~~~~~~~ 180 (253)
.++++.|+.+...|.+.|..|..+-.-+...
T Consensus 14 REEVevLKe~I~EL~e~~~qLE~EN~~Lk~~ 44 (78)
T 1dip_A 14 REEVEILKEQIRELVEKNSQLERENTLLKTL 44 (78)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4788999999999999999999886655543
No 71
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=33.48 E-value=87 Score=19.89 Aligned_cols=29 Identities=17% Similarity=0.178 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039982 151 EQIRRSRLMEQKAMLENETLRKQMEELRR 179 (253)
Q Consensus 151 ~qi~~Lk~Ke~~l~eeN~~L~~~~~~~~~ 179 (253)
..++.|+.....|+.++..|..++.++..
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777777777777777777777776643
No 72
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=33.17 E-value=26 Score=25.97 Aligned_cols=24 Identities=21% Similarity=0.284 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 039982 153 IRRSRLMEQKAMLENETLRKQMEE 176 (253)
Q Consensus 153 i~~Lk~Ke~~l~eeN~~L~~~~~~ 176 (253)
+++|..+...|+-||+.|+++|..
T Consensus 10 ~EeLaaeL~kLqmENK~LKkkl~~ 33 (110)
T 2oa5_A 10 YEEMVKEVERLKLENKTLKQKVKS 33 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 577888889999999999999854
No 73
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=32.82 E-value=1.3e+02 Score=21.27 Aligned_cols=53 Identities=23% Similarity=0.384 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHh
Q 039982 126 ELQQLEHQLSEGMLSVK--DMKEQVLLEQIRRSRLMEQK-----AMLENETLRKQMEELR 178 (253)
Q Consensus 126 EL~~LE~~Le~sL~~IR--~rK~qll~~qi~~Lk~Ke~~-----l~eeN~~L~~~~~~~~ 178 (253)
+++.|=..|-.-+.+|| +..+..|..+|..++.+... -..+-..|+.++..+.
T Consensus 10 ~mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~~~~~~~~~~~ye~~i~~Lr~~i~~~~ 69 (93)
T 3s4r_A 10 ELQELNDRFANLIDKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLT 69 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHH
Confidence 46777778888888887 45566777777777765432 2445555666665543
No 74
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=32.63 E-value=1.5e+02 Score=22.05 Aligned_cols=33 Identities=30% Similarity=0.218 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039982 145 KEQVLLEQIRRSRLMEQKAMLENETLRKQMEEL 177 (253)
Q Consensus 145 K~qll~~qi~~Lk~Ke~~l~eeN~~L~~~~~~~ 177 (253)
+.+-|..+|..|..+.+....+-++|+...+.+
T Consensus 72 ~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~ 104 (121)
T 3mq7_A 72 KVEELEGEITTLNHKLQDASAEVERLRRENQVL 104 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhh
Confidence 456677888888888888888888888877655
No 75
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=32.09 E-value=1.2e+02 Score=21.29 Aligned_cols=27 Identities=19% Similarity=0.126 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039982 148 VLLEQIRRSRLMEQKAMLENETLRKQM 174 (253)
Q Consensus 148 ll~~qi~~Lk~Ke~~l~eeN~~L~~~~ 174 (253)
-|.++|+.|+.....|.++|..|+.-.
T Consensus 50 ~Lh~~ie~l~eEi~~lk~en~eL~ela 76 (83)
T 1uii_A 50 KLHKEIEQKDNEIARLKKENKELAEVA 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555566666666665543
No 76
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=31.01 E-value=89 Score=18.77 Aligned_cols=26 Identities=31% Similarity=0.387 Sum_probs=17.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHH
Q 039982 120 DGLSFKELQQLEHQLSEGMLSVKDMK 145 (253)
Q Consensus 120 ~~Ls~~EL~~LE~~Le~sL~~IR~rK 145 (253)
++++.+||-.||..|..--+++-.-|
T Consensus 15 egfspeelaaleselqalekklaalk 40 (48)
T 1g6u_A 15 EGFSPEELAALESELQALEKKLAALK 40 (48)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999999988765544444333
No 77
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=28.79 E-value=1.2e+02 Score=19.52 Aligned_cols=29 Identities=21% Similarity=0.312 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039982 148 VLLEQIRRSRLMEQKAMLENETLRKQMEE 176 (253)
Q Consensus 148 ll~~qi~~Lk~Ke~~l~eeN~~L~~~~~~ 176 (253)
-|.+-+-.|+.....|..||+.|.+-+++
T Consensus 7 SlVDtVYaLkDqV~eL~qe~k~m~k~lEe 35 (56)
T 2w6b_A 7 SLVDTVYALKDEVQELRQDNKKMKKSLEE 35 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666677777777777777776654
No 78
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=28.21 E-value=1.1e+02 Score=21.04 Aligned_cols=25 Identities=20% Similarity=0.363 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 039982 153 IRRSRLMEQKAMLENETLRKQMEEL 177 (253)
Q Consensus 153 i~~Lk~Ke~~l~eeN~~L~~~~~~~ 177 (253)
|..|+.++..+.++...|+.+...+
T Consensus 49 I~~L~~~~~~l~~e~~~L~~e~~~L 73 (80)
T 1nlw_A 49 IKKLEDSDRKAVHQIDQLQREQRHL 73 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555554443
No 79
>2ky6_A Mediator of RNA polymerase II transcription subun; ARC, VP16 binding domain, acid, transcription REGU; NMR {Homo sapiens} PDB: 2l23_A 2l6u_A 2xnf_A
Probab=28.13 E-value=33 Score=27.31 Aligned_cols=36 Identities=14% Similarity=0.456 Sum_probs=27.9
Q ss_pred hcccCCceEEEEEecCCcccc-ccc-------chhhhhhhhhcc
Q 039982 36 SVLCDADVGVIVFSSTGKLYE-FSS-------SSMEHILSRYSK 71 (253)
Q Consensus 36 SvLCdaevalIifS~~gkl~e-~~s-------~sm~~iieRY~~ 71 (253)
+.-|++.|-+++|||+-+.|- |-. ..+++||+.|+.
T Consensus 116 ~~~ceiKvLiLlYs~~k~aflGfIPnDQ~~Fv~rlr~Viq~~k~ 159 (166)
T 2ky6_A 116 TAPCEVRVLMLLYSSKKKIFMGLIPYDQSGFVNGIRQVITNHKQ 159 (166)
T ss_dssp TCCCSCCEEEEEECTTTCSEEEEEESSHHHHHHHHHHHHHHHHT
T ss_pred CCCcceEEEEEEEcCCcceeeeeccCCHHHHHHHHHHHHHHHHH
Confidence 566999999999999999876 643 347777777654
No 80
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=27.55 E-value=76 Score=16.87 Aligned_cols=19 Identities=26% Similarity=0.371 Sum_probs=9.2
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 039982 94 SAELNALKDEYARLRLAYM 112 (253)
Q Consensus 94 ~~e~~kLk~ei~~Lq~~~r 112 (253)
..|++.|++.+.+|++.+|
T Consensus 7 ykeledlqerlrklrkklr 25 (27)
T 3twe_A 7 YKELEDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3444555555555544443
No 81
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=27.37 E-value=93 Score=19.68 Aligned_cols=21 Identities=24% Similarity=0.339 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 039982 156 SRLMEQKAMLENETLRKQMEE 176 (253)
Q Consensus 156 Lk~Ke~~l~eeN~~L~~~~~~ 176 (253)
|=+++..|..||..|++++..
T Consensus 8 L~~QVe~Lk~ENshLrrEL~d 28 (54)
T 1deb_A 8 LLKQVEALKMENSNLRQELED 28 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHh
Confidence 334444555666666666654
No 82
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=27.23 E-value=1e+02 Score=21.42 Aligned_cols=29 Identities=21% Similarity=0.171 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039982 148 VLLEQIRRSRLMEQKAMLENETLRKQMEE 176 (253)
Q Consensus 148 ll~~qi~~Lk~Ke~~l~eeN~~L~~~~~~ 176 (253)
.|..+|+.++.....|.+||..|..-...
T Consensus 38 ~Lh~~ie~~~eEi~~LkeEN~~L~el~~~ 66 (79)
T 2zxx_A 38 KLHKEIEQKDSEIARLRKENKDLAEVAEH 66 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666667777777777654433
No 83
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=26.84 E-value=95 Score=17.80 Aligned_cols=24 Identities=0% Similarity=-0.151 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 039982 154 RRSRLMEQKAMLENETLRKQMEEL 177 (253)
Q Consensus 154 ~~Lk~Ke~~l~eeN~~L~~~~~~~ 177 (253)
..|..|+.+|..+|..|..++..+
T Consensus 3 nQLEdKVEell~~~~~le~EV~Rl 26 (33)
T 2wq1_A 3 KQLEDKIEENTSKIYHNTNEIARN 26 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHH
Confidence 345555555556666665555444
No 84
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=26.59 E-value=2.6e+02 Score=32.43 Aligned_cols=50 Identities=20% Similarity=0.258 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039982 125 KELQQLEHQLSEGMLSVKDMKEQV--LLEQIRRSRLMEQKAMLENETLRKQM 174 (253)
Q Consensus 125 ~EL~~LE~~Le~sL~~IR~rK~ql--l~~qi~~Lk~Ke~~l~eeN~~L~~~~ 174 (253)
++|..+|..|+.+-....+.+.+| +.+.+..|+.+-..+..|...|..++
T Consensus 2014 ~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~ 2065 (3245)
T 3vkg_A 2014 EEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTES 2065 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888888888877777666554 55667777766555555555555544
No 85
>1zps_A PRA-CH, phosphoribosyl-AMP cyclohydrolase; histidine biosynthesis; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.168.1.1
Probab=26.52 E-value=22 Score=27.46 Aligned_cols=37 Identities=27% Similarity=0.430 Sum_probs=28.7
Q ss_pred ccccc-cccccchhh---------hhhhhhcccCCceEEEEEecCCc
Q 039982 17 RQVTF-SKRRNGLLK---------KAKELSVLCDADVGVIVFSSTGK 53 (253)
Q Consensus 17 RqvTF-sKRr~GL~K---------KA~ELSvLCdaevalIifS~~gk 53 (253)
+.+|| |+=|+.|-. +..|+.+-||.|+-|+..-+.|.
T Consensus 54 g~~~y~SRSR~~LW~KGetSG~~Q~v~~i~~DCD~D~LL~~V~q~G~ 100 (138)
T 1zps_A 54 GTAHYWSTSRGKLWLKGESSGHVQRVKDVLVDCDGDAVVLKVEQEGG 100 (138)
T ss_dssp SBCEEEETTTTEEEETTTTTSCCEEEEEEEECTTSSEEEEEEEESSC
T ss_pred CcEEEEcCCCCccccCccCCCCcEEEEEEEecCCCCEEEEEEEecCC
Confidence 45564 665765655 46799999999999999999884
No 86
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=26.00 E-value=3.9e+02 Score=24.52 Aligned_cols=34 Identities=21% Similarity=0.128 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039982 142 KDMKEQVLLEQIRRSRLMEQKAMLENETLRKQME 175 (253)
Q Consensus 142 R~rK~qll~~qi~~Lk~Ke~~l~eeN~~L~~~~~ 175 (253)
..++.+.+.++++..+++-..++++...+.++++
T Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~ 554 (597)
T 3oja_B 521 KLRETQARRTEADAKQKETEDLEQENIALEKQLD 554 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHh
Confidence 3444445555555555555555555555555443
No 87
>3nrf_A APAG protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 1.50A {Pseudomonas aeruginosa} PDB: 3sb3_A
Probab=25.69 E-value=20 Score=26.49 Aligned_cols=42 Identities=19% Similarity=0.325 Sum_probs=33.4
Q ss_pred ecCCCCccccccccccchhhhhhhhhcccCCceEEEEEecCCccccc
Q 039982 11 IENLNSRQVTFSKRRNGLLKKAKELSVLCDADVGVIVFSSTGKLYEF 57 (253)
Q Consensus 11 Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaevalIifS~~gkl~e~ 57 (253)
|.++.-...||-=.-.-|.+|.-+|+.+| ++.|+|.|+-|-.
T Consensus 21 ~~~k~~ytktFdV~vaNl~~~~idLsk~C-----~~a~~~~gkef~l 62 (106)
T 3nrf_A 21 VGDKHFRTQAFKVRLVNAAKSEISLKNSC-----LVAQSAAGQSFRL 62 (106)
T ss_dssp ETTEEEEEEEEEEEEECCSSSCEECTTCE-----EEEEETTSCEEEE
T ss_pred eCCeeEEEEEEEEEEecCCCCccccchhh-----heeeCcCCCEEEe
Confidence 45556667788888888999999999655 9999999987654
No 88
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=25.41 E-value=3.7e+02 Score=24.15 Aligned_cols=17 Identities=18% Similarity=0.352 Sum_probs=9.3
Q ss_pred hHHHHHHHHHHHHHHHH
Q 039982 94 SAELNALKDEYARLRLA 110 (253)
Q Consensus 94 ~~e~~kLk~ei~~Lq~~ 110 (253)
...|++|+..++.+++.
T Consensus 66 ~~rIe~L~~~L~~~s~s 82 (390)
T 1deq_A 66 TSRINKLRDSLFNYQKN 82 (390)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 44555566666555443
No 89
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=24.77 E-value=1.6e+02 Score=30.49 Aligned_cols=106 Identities=16% Similarity=0.149 Sum_probs=0.0
Q ss_pred EEEEecCCcccccccchhhhhhhhhcccchhhhhcccCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHhcC-----CCC
Q 039982 45 VIVFSSTGKLYEFSSSSMEHILSRYSKGIDLECQTNRNEEHGVPELPPKSAELNALKDEYARLRLAYMRMNG-----QEL 119 (253)
Q Consensus 45 lIifS~~gkl~e~~s~sm~~iieRY~~~~~~~~~~~~~~~~~~~~lq~~~~e~~kLk~ei~~Lq~~~r~l~G-----edL 119 (253)
+++|.+.|++..| .++++||+-|-.+--.--..+. ...+.+++.++++++...+-+.| =.+
T Consensus 975 m~~~d~~g~i~k~--~~l~eiL~~f~~~R~e~~~rRk------------~~~l~~l~~~l~k~~~r~~fi~~vi~~~L~i 1040 (1177)
T 4gfh_A 975 MVAFDPHGKIKKY--NSVNEILSEFYYVRLEYYQKRK------------DHMSERLQWEVEKYSFQVKFIKMIIEKELTV 1040 (1177)
T ss_dssp CEEECTTSCEEEC--SSHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred EEEEcCCCCccCc--CCHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHhhcCeEEE
Q ss_pred CCCCHHHHHHHHHH--------------------------------------------------------------HHHH
Q 039982 120 DGLSFKELQQLEHQ--------------------------------------------------------------LSEG 137 (253)
Q Consensus 120 ~~Ls~~EL~~LE~~--------------------------------------------------------------Le~s 137 (253)
..-+.+++..+-.. |+..
T Consensus 1041 ~~~~~devI~~Lr~~~~~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qydyIL~Mr 1120 (1177)
T 4gfh_A 1041 TNKPRNAIIQELENLGFPRFNKEGKPYYGSPNDEIAEQINDVKGATSDEEDEESSHEDTENVINGPEELYGTYEYLLGMR 1120 (1177)
T ss_dssp SSSCHHHHHHHHHHTTCCEECSSSCEECCC------------------------------------CTTTCBTHHHHSSB
T ss_pred ecCCHHHHHHHHHHCCCcccchhhhhhcccchhhhhhhhhhhccccccccccccccchhhhhhcccccccchhhHHhcCh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039982 138 MLSVKDMKEQVLLEQIRRSRLMEQKAM 164 (253)
Q Consensus 138 L~~IR~rK~qll~~qi~~Lk~Ke~~l~ 164 (253)
|.+...-+.+-|.+|.+++..+...|.
T Consensus 1121 L~~LT~ee~ekL~~E~~e~~~ei~~L~ 1147 (1177)
T 4gfh_A 1121 IWSLTKERYQKLLKQKQEKETELENLL 1147 (1177)
T ss_dssp GGGGSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
No 90
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=24.73 E-value=98 Score=21.69 Aligned_cols=25 Identities=20% Similarity=0.177 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 039982 149 LLEQIRRSRLMEQKAMLENETLRKQ 173 (253)
Q Consensus 149 l~~qi~~Lk~Ke~~l~eeN~~L~~~ 173 (253)
|.++|+.++.....|.++|..|+.-
T Consensus 43 Lh~~ie~~~eEi~~Lk~en~~L~el 67 (83)
T 1wlq_A 43 LHKEIEQKDSEIARLRKENKDLAEV 67 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666677777777777777654
No 91
>1kaf_A Transcription regulatory protein MOTA; escherichia coli, X-RAY crystallography, protein-DNA interactions, structural genomics; 1.60A {Enterobacteria phage T4} SCOP: d.199.1.1
Probab=24.27 E-value=19 Score=26.58 Aligned_cols=51 Identities=22% Similarity=0.403 Sum_probs=34.7
Q ss_pred ceeEEe-cCCCCccccccccccchhhhhhhhhcccCCceEEEEEecCCcccccccchhhhhhhhhcc
Q 039982 6 IEIKKI-ENLNSRQVTFSKRRNGLLKKAKELSVLCDADVGVIVFSSTGKLYEFSSSSMEHILSRYSK 71 (253)
Q Consensus 6 i~ikrI-en~~~RqvTFsKRr~GL~KKA~ELSvLCdaevalIifS~~gkl~e~~s~sm~~iieRY~~ 71 (253)
+++|.+ +|.++=.|+|.||-.|+-+ +=....|..--|+---.+++++.|..
T Consensus 23 ie~K~~~~~RSN~~i~f~KRt~GiRq---------------fEi~n~G~fRI~gYk~se~~~~~f~s 74 (108)
T 1kaf_A 23 FVLKKVEIYRSNYLAILEKRTNGIRN---------------FEINNNGNMRIFGYKMMEHHIQKFTD 74 (108)
T ss_dssp CCEEEEEEETTEEEEEEEEEETTEEE---------------EEECTTSEEEEEEESCCHHHHHHHHT
T ss_pred ceeeeeEeeccceEEeeecccCceeE---------------EEEecCCcEEEEEecCCHHHHHHHHh
Confidence 777765 7889999999999999832 33345666655555445555555544
No 92
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=24.06 E-value=2.6e+02 Score=21.81 Aligned_cols=47 Identities=6% Similarity=0.041 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q 039982 127 LQQLEHQLSEGMLSVKDMKEQVLL--EQIRRSRLMEQKAMLENETLRKQ 173 (253)
Q Consensus 127 L~~LE~~Le~sL~~IR~rK~qll~--~qi~~Lk~Ke~~l~eeN~~L~~~ 173 (253)
+.+|+..|...=+.+-.-+++++. -|...+..|...|++||..|-..
T Consensus 84 i~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~R 132 (152)
T 3a7p_A 84 IRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVAR 132 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444454444444444444444333 34456677888999999887654
No 93
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=22.73 E-value=1.2e+02 Score=17.68 Aligned_cols=24 Identities=21% Similarity=0.155 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 039982 148 VLLEQIRRSRLMEQKAMLENETLR 171 (253)
Q Consensus 148 ll~~qi~~Lk~Ke~~l~eeN~~L~ 171 (253)
.|...|+.-......|.++|..|.
T Consensus 11 kLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 11 KLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHH
Confidence 344455555555666667776664
No 94
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=22.54 E-value=2.3e+02 Score=20.80 Aligned_cols=19 Identities=11% Similarity=0.137 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 039982 154 RRSRLMEQKAMLENETLRK 172 (253)
Q Consensus 154 ~~Lk~Ke~~l~eeN~~L~~ 172 (253)
+.|+.+.+.|...|-.|-.
T Consensus 52 ~~l~~~iReLEq~NDDLER 70 (111)
T 2v66_B 52 EQLHKYVRELEQANDDLER 70 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhchHHHH
Confidence 3344444445555544443
No 95
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=22.52 E-value=2.3e+02 Score=20.80 Aligned_cols=53 Identities=17% Similarity=0.041 Sum_probs=33.3
Q ss_pred chHHHHHHHHHHHHHHHHHHH--hcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 039982 93 KSAELNALKDEYARLRLAYMR--MNGQELDGLSFKELQQLEHQLSEGMLSVKDMK 145 (253)
Q Consensus 93 ~~~e~~kLk~ei~~Lq~~~r~--l~GedL~~Ls~~EL~~LE~~Le~sL~~IR~rK 145 (253)
+..++.+|+-++..|.+.++. -.+.+=..|+..+-+-+-.+.-.+|...-++|
T Consensus 13 LaaeL~kLqmENK~LKkkl~~~g~~~p~d~~LTp~qKea~I~s~~~~Lss~A~~K 67 (110)
T 2oa5_A 13 MVKEVERLKLENKTLKQKVKSSGAVSSDDSILTAAKRESIIVSSSRALGAVAMRK 67 (110)
T ss_dssp HHHHHHHHHHHHHHHHHTC---------CCBCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888888777664 12245567888887777666666666655555
No 96
>1fmh_B General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_B
Probab=22.45 E-value=1.1e+02 Score=16.97 Aligned_cols=27 Identities=15% Similarity=0.220 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039982 152 QIRRSRLMEQKAMLENETLRKQMEELR 178 (253)
Q Consensus 152 qi~~Lk~Ke~~l~eeN~~L~~~~~~~~ 178 (253)
++..|+++.+.|...|-.-++++..+.
T Consensus 2 evqalkkrvqalkarnyaakqkvqalr 28 (33)
T 1fmh_B 2 EVQALKKRVQALKARNYAAKQKVQALR 28 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 356788888888888888888887664
No 97
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=22.30 E-value=1.7e+02 Score=24.00 Aligned_cols=48 Identities=17% Similarity=0.102 Sum_probs=23.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039982 121 GLSFKELQQLEHQLSEGMLSVKDMKEQVLLEQIRRSRLMEQKAMLENETLRKQME 175 (253)
Q Consensus 121 ~Ls~~EL~~LE~~Le~sL~~IR~rK~qll~~qi~~Lk~Ke~~l~eeN~~L~~~~~ 175 (253)
+++++|+..+-..-...+ .++|.+++..+.++...|+..-..|...+.
T Consensus 63 g~~l~~i~~~~~~~~~~~-------~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~ 110 (278)
T 1r8e_A 63 GTPLEEMKKAQDLEMEEL-------FAFYTEQERQIREKLDFLSALEQTISLVKK 110 (278)
T ss_dssp TCCHHHHHHHTTSCHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhChHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777666532111112 234455555555555555555555554443
No 98
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=21.40 E-value=1.7e+02 Score=23.72 Aligned_cols=34 Identities=9% Similarity=0.112 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039982 139 LSVKDMKEQVLLEQIRRSRLMEQKAMLENETLRKQMEE 176 (253)
Q Consensus 139 ~~IR~rK~qll~~qi~~Lk~Ke~~l~eeN~~L~~~~~~ 176 (253)
..|.++|.+|+ +.|++|...|.++-..|...+..
T Consensus 11 ~~i~~Kk~ELi----~~L~~kL~~L~~eqe~l~ee~~~ 44 (190)
T 3thf_A 11 NLIKQKMDELI----KHLNQKIVSLKREQQTISEECSA 44 (190)
T ss_dssp CHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888875 88888888888888888777654
No 99
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=21.30 E-value=2.5e+02 Score=20.73 Aligned_cols=53 Identities=11% Similarity=0.088 Sum_probs=30.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039982 121 GLSFKELQQLEHQLSEGMLSVKDMKEQVLLEQIRRSRLMEQKAMLENETLRKQM 174 (253)
Q Consensus 121 ~Ls~~EL~~LE~~Le~sL~~IR~rK~qll~~qi~~Lk~Ke~~l~eeN~~L~~~~ 174 (253)
+++++|+..+-...+.+-... ..-.+++.+++..+.++...|...-..|...+
T Consensus 57 G~sl~eI~~~l~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~ 109 (135)
T 1q06_A 57 GFNLEESGELVNLFNDPQRHS-ADVKRRTLEKVAEIERHIEELQSMRDQLLALA 109 (135)
T ss_dssp TCCHHHHHHHHHHHHCTTCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhhhcCCchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888877654433221111 12235667777777777766666666665544
No 100
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=21.12 E-value=45 Score=22.91 Aligned_cols=25 Identities=20% Similarity=0.339 Sum_probs=19.2
Q ss_pred EEEEEecCCccccccc-chhhhhhhh
Q 039982 44 GVIVFSSTGKLYEFSS-SSMEHILSR 68 (253)
Q Consensus 44 alIifS~~gkl~e~~s-~sm~~iieR 68 (253)
-+.||.|.|..++++. +++.++...
T Consensus 7 ~i~v~tP~G~~~~lp~GaT~~D~A~~ 32 (78)
T 3hvz_A 7 EVFVFTPKGDVISLPIGSTVIDFAYA 32 (78)
T ss_dssp EEEEECTTSCEEEEETTCBHHHHHHH
T ss_pred eEEEECCCCCEEEecCCCCHHHHHHH
Confidence 3689999999999987 566666543
No 101
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=20.91 E-value=1.4e+02 Score=20.45 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 039982 151 EQIRRSRLMEQKAMLENETLRKQME 175 (253)
Q Consensus 151 ~qi~~Lk~Ke~~l~eeN~~L~~~~~ 175 (253)
++...+......|..+|..|+++++
T Consensus 54 ~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 54 DSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3345555555666777777777764
No 102
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=20.85 E-value=1.4e+02 Score=21.19 Aligned_cols=47 Identities=15% Similarity=0.067 Sum_probs=25.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039982 121 GLSFKELQQLEHQLSEGMLSVKDMKEQVLLEQIRRSRLMEQKAMLENETLRKQM 174 (253)
Q Consensus 121 ~Ls~~EL~~LE~~Le~sL~~IR~rK~qll~~qi~~Lk~Ke~~l~eeN~~L~~~~ 174 (253)
++++++...+-..-. .....++.++++.+.++...|...-..|...+
T Consensus 58 G~sl~~I~~~l~~~~-------~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 104 (108)
T 2vz4_A 58 GFPLDEVAALLDDPA-------ADPRAHLRRQHELLSARIGKLQKMAAAVEQAM 104 (108)
T ss_dssp TCCHHHHHHHHTC------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhCCc-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777776543211 11234566666666666666666555555544
No 103
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=20.61 E-value=4.4e+02 Score=27.05 Aligned_cols=13 Identities=23% Similarity=0.317 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 039982 95 AELNALKDEYARL 107 (253)
Q Consensus 95 ~e~~kLk~ei~~L 107 (253)
.++..++.++..+
T Consensus 864 ~eL~el~~~L~~l 876 (1184)
T 1i84_S 864 EELQRTKERQQKA 876 (1184)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333344333333
No 104
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=20.60 E-value=48 Score=19.49 Aligned_cols=27 Identities=15% Similarity=0.155 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039982 151 EQIRRSRLMEQKAMLENETLRKQMEEL 177 (253)
Q Consensus 151 ~qi~~Lk~Ke~~l~eeN~~L~~~~~~~ 177 (253)
..|+.+++|.+.|+.+...+..++..+
T Consensus 4 ~~i~avKkKiq~lq~q~d~aee~~~~~ 30 (37)
T 3azd_A 4 SSLEAVRRKIRSLQEQNYHLENEVARL 30 (37)
T ss_dssp --CHHHHHHHHHHHHHTTTTHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888887777777766554
No 105
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=20.46 E-value=2.3e+02 Score=20.02 Aligned_cols=41 Identities=17% Similarity=0.131 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039982 137 GMLSVKDMKEQVLLEQIRRSRLMEQKAMLENETLRKQMEELR 178 (253)
Q Consensus 137 sL~~IR~rK~qll~~qi~~Lk~Ke~~l~eeN~~L~~~~~~~~ 178 (253)
++..+..+++. +...|+.|.++...+..+-..|+.++.++-
T Consensus 71 a~~~L~~~~e~-ie~~i~~le~~~~~l~~~l~~lk~~l~~~~ 111 (117)
T 2zqm_A 71 AVAELKEKIET-LEVRLNALERQEKKLNEKLKELTAQIQSAL 111 (117)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444433 367788888888888888888888887764
No 106
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=20.33 E-value=1.9e+02 Score=23.69 Aligned_cols=27 Identities=19% Similarity=0.126 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039982 148 VLLEQIRRSRLMEQKAMLENETLRKQM 174 (253)
Q Consensus 148 ll~~qi~~Lk~Ke~~l~eeN~~L~~~~ 174 (253)
-|.++|+.|+.....|.++|..|+.-.
T Consensus 119 ~Lh~~ie~l~eEi~~LkeEn~eLkeLa 145 (209)
T 2wvr_A 119 KLHKEIEQKDNEIARLKKENKELAEVA 145 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666666665543
No 107
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=20.16 E-value=3.3e+02 Score=21.86 Aligned_cols=10 Identities=30% Similarity=0.262 Sum_probs=4.2
Q ss_pred hHHHHHHHHH
Q 039982 94 SAELNALKDE 103 (253)
Q Consensus 94 ~~e~~kLk~e 103 (253)
..++..|-..
T Consensus 40 ~~eL~~LL~~ 49 (192)
T 2p22_C 40 SKEIIDLIQT 49 (192)
T ss_dssp THHHHHHHHH
T ss_pred HHHHHHHHhC
Confidence 3444444333
No 108
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=20.09 E-value=1.9e+02 Score=24.55 Aligned_cols=42 Identities=19% Similarity=0.282 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039982 126 ELQQLEHQLSEGMLSVKDMKEQVLLEQIRRSRLMEQKAMLENETLRK 172 (253)
Q Consensus 126 EL~~LE~~Le~sL~~IR~rK~qll~~qi~~Lk~Ke~~l~eeN~~L~~ 172 (253)
.+.+|+.+++.. ..|++.|.+.+..++++...|.+|+..|++
T Consensus 55 ~l~eL~~ql~~L-----~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 55 DIHQLEARIDSL-----AARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHHHH-----TTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 355555554332 234444555666666666666666666543
No 109
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=20.08 E-value=1.5e+02 Score=20.12 Aligned_cols=27 Identities=19% Similarity=0.182 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039982 152 QIRRSRLMEQKAMLENETLRKQMEELR 178 (253)
Q Consensus 152 qi~~Lk~Ke~~l~eeN~~L~~~~~~~~ 178 (253)
-|..|+.+...|..+...|+.+...+.
T Consensus 48 YI~~L~~~~~~l~~e~~~L~~~~~~L~ 74 (83)
T 1nkp_B 48 YIQYMRRKNHTHQQDIDDLKRQNALLE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777777766654
Done!