Query 039983
Match_columns 220
No_of_seqs 146 out of 1190
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 03:55:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039983.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039983hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00730 conserved hypothetic 100.0 3.1E-54 6.8E-59 358.0 20.6 178 12-189 1-178 (178)
2 COG1611 Predicted Rossmann fol 100.0 5.3E-45 1.1E-49 308.6 19.8 189 3-192 6-198 (205)
3 TIGR00725 conserved hypothetic 100.0 1.2E-41 2.5E-46 278.1 19.0 157 11-186 1-158 (159)
4 PF03641 Lysine_decarbox: Poss 100.0 7.6E-39 1.6E-43 254.1 14.9 131 56-186 1-133 (133)
5 TIGR00732 dprA DNA protecting 99.6 2.2E-14 4.7E-19 123.0 17.5 155 12-185 45-219 (220)
6 PF02481 DNA_processg_A: DNA r 99.3 3.9E-11 8.4E-16 102.3 13.8 143 11-163 44-206 (212)
7 PRK10736 hypothetical protein; 99.2 9E-10 1.9E-14 101.1 17.0 159 11-188 107-285 (374)
8 COG0758 Smf Predicted Rossmann 98.9 6.7E-08 1.5E-12 88.1 15.7 125 12-145 112-255 (350)
9 PF12694 MoCo_carrier: Putativ 96.6 0.018 3.8E-07 46.5 9.0 93 46-145 1-98 (145)
10 PF05014 Nuc_deoxyrib_tr: Nucl 95.2 0.046 1E-06 41.5 5.1 46 95-146 49-98 (113)
11 PF06908 DUF1273: Protein of u 94.6 0.75 1.6E-05 38.3 11.4 130 11-145 1-168 (177)
12 PF13528 Glyco_trans_1_3: Glyc 94.5 1.5 3.3E-05 38.2 13.8 119 42-188 192-316 (318)
13 PF11071 DUF2872: Protein of u 94.1 0.63 1.4E-05 37.1 9.3 74 98-187 63-137 (141)
14 KOG3614 Ca2+/Mg2+-permeable ca 93.7 1.5 3.2E-05 46.4 13.6 152 13-168 120-326 (1381)
15 PRK13660 hypothetical protein; 93.5 4 8.7E-05 34.2 14.1 108 33-144 33-167 (182)
16 PRK10565 putative carbohydrate 93.3 0.4 8.7E-06 46.1 8.3 127 42-187 254-384 (508)
17 TIGR03646 YtoQ_fam YtoQ family 92.2 1.6 3.4E-05 34.9 8.8 74 98-187 66-140 (144)
18 PF10686 DUF2493: Protein of u 91.8 2.4 5.2E-05 30.0 8.7 63 12-77 4-67 (71)
19 PLN02605 monogalactosyldiacylg 91.5 4 8.7E-05 37.1 12.3 72 100-191 275-346 (382)
20 TIGR01133 murG undecaprenyldip 91.2 9.7 0.00021 33.3 15.9 73 103-191 246-320 (348)
21 PRK13608 diacylglycerol glucos 91.0 5.1 0.00011 36.6 12.5 72 99-190 265-336 (391)
22 cd03785 GT1_MurG MurG is an N- 90.6 11 0.00024 33.0 16.1 77 99-191 244-323 (350)
23 PRK13609 diacylglycerol glucos 90.2 9.2 0.0002 34.4 13.2 73 99-191 265-337 (380)
24 TIGR01426 MGT glycosyltransfer 89.7 8 0.00017 35.0 12.5 71 103-191 287-358 (392)
25 cd03784 GT1_Gtf_like This fami 89.6 5.6 0.00012 35.9 11.4 72 103-191 300-371 (401)
26 PRK12446 undecaprenyldiphospho 88.6 17 0.00037 33.0 13.8 73 103-190 248-323 (352)
27 COG0707 MurG UDP-N-acetylgluco 88.2 21 0.00046 32.8 16.5 81 94-191 239-323 (357)
28 PF06258 Mito_fiss_Elm1: Mitoc 86.2 25 0.00055 31.7 15.1 78 103-189 224-308 (311)
29 PRK00025 lpxB lipid-A-disaccha 85.1 11 0.00024 33.6 10.5 77 102-191 256-340 (380)
30 COG3613 Nucleoside 2-deoxyribo 83.7 8.3 0.00018 32.0 8.1 44 97-146 58-107 (172)
31 TIGR03590 PseG pseudaminic aci 83.4 17 0.00036 31.9 10.6 37 98-145 232-268 (279)
32 PRK00696 sucC succinyl-CoA syn 83.1 25 0.00053 32.4 12.0 72 108-189 311-384 (388)
33 COG0063 Predicted sugar kinase 80.2 16 0.00034 32.7 9.3 132 41-187 31-168 (284)
34 COG3660 Predicted nucleoside-d 79.6 47 0.001 30.0 12.9 56 103-167 240-296 (329)
35 PF04101 Glyco_tran_28_C: Glyc 79.4 1.8 3.9E-05 34.5 2.8 34 102-145 67-100 (167)
36 COG1597 LCB5 Sphingosine kinas 79.0 4 8.7E-05 36.5 5.2 46 31-77 46-92 (301)
37 COG2185 Sbm Methylmalonyl-CoA 77.6 7.1 0.00015 31.5 5.7 81 30-123 27-107 (143)
38 TIGR00215 lpxB lipid-A-disacch 77.2 59 0.0013 29.8 12.6 75 104-191 264-346 (385)
39 TIGR00196 yjeF_cterm yjeF C-te 75.2 20 0.00043 31.1 8.4 42 102-147 87-128 (272)
40 PF13607 Succ_CoA_lig: Succiny 71.0 28 0.0006 27.6 7.6 66 107-187 54-136 (138)
41 PRK05749 3-deoxy-D-manno-octul 70.2 87 0.0019 28.6 16.6 82 90-191 303-387 (425)
42 COG1010 CobJ Precorrin-3B meth 68.2 68 0.0015 28.2 9.8 107 36-145 65-195 (249)
43 TIGR00661 MJ1255 conserved hyp 68.1 85 0.0018 27.6 13.9 104 43-164 189-293 (321)
44 PF01256 Carb_kinase: Carbohyd 65.1 24 0.00053 30.6 6.7 127 46-190 2-135 (242)
45 smart00046 DAGKc Diacylglycero 64.7 8.5 0.00019 29.5 3.4 34 111-144 52-85 (124)
46 PRK13337 putative lipid kinase 63.9 19 0.0004 31.9 5.8 44 33-77 47-92 (304)
47 COG1819 Glycosyl transferases, 62.1 1.1E+02 0.0024 28.5 10.8 95 40-152 235-333 (406)
48 KOG4022 Dihydropteridine reduc 60.5 58 0.0013 27.4 7.7 70 42-118 3-83 (236)
49 PRK02645 ppnK inorganic polyph 59.5 16 0.00036 32.7 4.7 106 10-163 2-116 (305)
50 CHL00200 trpA tryptophan synth 59.0 47 0.001 29.3 7.4 40 120-163 75-119 (263)
51 COG1057 NadD Nicotinic acid mo 58.9 14 0.00031 31.2 4.0 34 10-43 1-34 (197)
52 cd01171 YXKO-related B.subtili 58.8 54 0.0012 27.9 7.7 42 103-148 73-114 (254)
53 TIGR00421 ubiX_pad polyprenyl 58.8 24 0.00052 29.3 5.3 81 107-188 75-165 (181)
54 PF00781 DAGK_cat: Diacylglyce 58.7 14 0.0003 28.3 3.7 40 104-144 48-89 (130)
55 PF00781 DAGK_cat: Diacylglyce 58.6 17 0.00037 27.8 4.1 43 34-77 44-91 (130)
56 PRK00726 murG undecaprenyldiph 58.1 1.3E+02 0.0029 26.4 15.3 79 96-191 241-323 (357)
57 COG3573 Predicted oxidoreducta 57.3 24 0.00053 33.0 5.4 84 44-135 141-245 (552)
58 PRK06029 3-octaprenyl-4-hydrox 56.6 27 0.00058 29.2 5.2 81 107-188 78-168 (185)
59 PF04007 DUF354: Protein of un 56.5 57 0.0012 29.8 7.8 65 103-190 244-308 (335)
60 PRK11914 diacylglycerol kinase 56.5 1.4E+02 0.003 26.2 10.2 17 112-128 68-84 (306)
61 COG1832 Predicted CoA-binding 55.5 23 0.00049 28.5 4.3 38 6-48 11-48 (140)
62 COG0549 ArcC Carbamate kinase 55.2 31 0.00068 31.2 5.6 60 34-116 175-234 (312)
63 KOG2968 Predicted esterase of 55.1 7.8 0.00017 40.0 2.0 47 33-81 829-886 (1158)
64 TIGR03702 lip_kinase_YegS lipi 54.4 27 0.00059 30.7 5.2 43 33-76 42-88 (293)
65 PF04127 DFP: DNA / pantothena 53.9 69 0.0015 26.6 7.3 64 46-114 22-89 (185)
66 cd07025 Peptidase_S66 LD-Carbo 53.3 1.1E+02 0.0023 27.0 8.8 35 107-144 62-96 (282)
67 cd07062 Peptidase_S66_mccF_lik 53.0 1.3E+02 0.0028 26.9 9.3 33 108-141 67-99 (308)
68 TIGR00519 asnASE_I L-asparagin 52.4 37 0.0008 30.9 5.8 49 106-157 76-129 (336)
69 cd03804 GT1_wbaZ_like This fam 52.4 76 0.0017 27.7 7.8 72 99-191 253-325 (351)
70 PRK00861 putative lipid kinase 52.3 27 0.00059 30.7 4.9 43 33-77 47-90 (300)
71 PRK11914 diacylglycerol kinase 51.7 32 0.00069 30.3 5.2 44 32-77 53-97 (306)
72 cd03786 GT1_UDP-GlcNAc_2-Epime 51.0 1.7E+02 0.0037 25.6 15.4 68 99-191 269-336 (363)
73 cd03820 GT1_amsD_like This fam 50.9 93 0.002 25.8 7.8 72 99-190 244-317 (348)
74 PRK08105 flavodoxin; Provision 50.8 32 0.0007 27.3 4.7 34 11-47 1-34 (149)
75 PRK12359 flavodoxin FldB; Prov 50.6 41 0.00089 27.7 5.4 36 12-47 80-116 (172)
76 PRK13054 lipid kinase; Reviewe 50.5 35 0.00075 30.1 5.3 44 33-77 46-93 (300)
77 PTZ00032 60S ribosomal protein 50.2 31 0.00068 29.5 4.6 40 29-68 162-209 (211)
78 cd03795 GT1_like_4 This family 49.7 83 0.0018 26.9 7.5 73 99-191 255-331 (357)
79 COG0593 DnaA ATPase involved i 49.7 66 0.0014 30.3 7.2 104 30-143 96-214 (408)
80 PRK02155 ppnK NAD(+)/NADH kina 49.6 1E+02 0.0023 27.4 8.2 62 9-74 3-94 (291)
81 PRK07313 phosphopantothenoylcy 49.5 57 0.0012 27.0 6.1 88 104-191 74-179 (182)
82 TIGR00640 acid_CoA_mut_C methy 49.2 75 0.0016 24.9 6.5 44 30-74 17-60 (132)
83 cd02201 FtsZ_type1 FtsZ is a G 48.8 1.1E+02 0.0024 27.2 8.3 73 35-115 78-154 (304)
84 PRK13055 putative lipid kinase 48.5 37 0.00081 30.6 5.2 44 33-77 49-94 (334)
85 PF05159 Capsule_synth: Capsul 48.5 21 0.00045 30.8 3.5 38 102-151 194-231 (269)
86 KOG3349 Predicted glycosyltran 48.2 1.6E+02 0.0034 24.4 9.0 121 11-164 3-128 (170)
87 PRK09880 L-idonate 5-dehydroge 47.8 1.9E+02 0.004 25.6 9.6 30 43-74 171-201 (343)
88 PF09152 DUF1937: Domain of un 47.7 22 0.00047 27.7 3.0 39 99-143 71-114 (116)
89 cd03808 GT1_cap1E_like This fa 47.4 65 0.0014 26.9 6.3 69 103-190 259-327 (359)
90 cd03825 GT1_wcfI_like This fam 47.2 1.1E+02 0.0023 26.4 7.8 71 100-191 257-329 (365)
91 PRK09004 FMN-binding protein M 47.1 37 0.00081 26.9 4.5 34 11-47 1-34 (146)
92 PF01820 Dala_Dala_lig_N: D-al 46.9 25 0.00054 26.8 3.3 36 12-47 1-36 (117)
93 cd00411 Asparaginase Asparagin 46.6 53 0.0012 29.6 5.9 48 107-157 78-130 (323)
94 PF14359 DUF4406: Domain of un 46.6 46 0.001 24.5 4.6 37 99-141 51-90 (92)
95 PRK14569 D-alanyl-alanine synt 46.5 52 0.0011 29.0 5.7 37 12-48 4-40 (296)
96 PLN02958 diacylglycerol kinase 46.4 44 0.00095 32.0 5.6 45 32-77 157-208 (481)
97 PRK06703 flavodoxin; Provision 45.0 53 0.0011 25.6 5.1 14 59-72 105-118 (151)
98 COG2081 Predicted flavoprotein 44.8 20 0.00044 33.7 2.9 27 45-73 6-32 (408)
99 cd03823 GT1_ExpE7_like This fa 44.8 1.1E+02 0.0023 25.9 7.3 72 99-191 254-328 (359)
100 TIGR02113 coaC_strep phosphopa 44.7 41 0.00089 27.8 4.5 83 107-189 76-176 (177)
101 cd06259 YdcF-like YdcF-like. Y 44.5 1.1E+02 0.0024 23.6 6.8 16 171-186 96-111 (150)
102 PRK09330 cell division protein 44.4 1.1E+02 0.0024 28.6 7.7 73 35-115 91-167 (384)
103 COG3967 DltE Short-chain dehyd 44.3 27 0.0006 30.3 3.4 27 45-72 8-34 (245)
104 PRK09922 UDP-D-galactose:(gluc 43.9 1.4E+02 0.0029 26.5 8.1 74 99-193 249-325 (359)
105 cd03801 GT1_YqgM_like This fam 43.7 79 0.0017 26.3 6.2 69 101-190 269-339 (374)
106 cd03822 GT1_ecORF704_like This 43.5 1.1E+02 0.0024 26.0 7.3 71 99-191 259-333 (366)
107 PF13692 Glyco_trans_1_4: Glyc 43.4 87 0.0019 23.1 5.9 70 100-190 63-133 (135)
108 COG0240 GpsA Glycerol-3-phosph 43.2 2.7E+02 0.0058 25.6 10.7 42 11-62 1-43 (329)
109 cd05844 GT1_like_7 Glycosyltra 43.1 1E+02 0.0022 26.8 7.1 70 101-191 258-335 (367)
110 PF02608 Bmp: Basic membrane p 42.6 41 0.0009 29.7 4.5 61 9-75 159-221 (306)
111 PRK12361 hypothetical protein; 42.6 51 0.0011 31.8 5.4 44 32-77 286-330 (547)
112 cd04951 GT1_WbdM_like This fam 42.3 89 0.0019 26.8 6.5 68 102-190 257-324 (360)
113 PRK04183 glutamyl-tRNA(Gln) am 42.2 67 0.0014 30.4 6.0 48 108-158 153-205 (419)
114 cd03799 GT1_amsK_like This is 41.8 1.2E+02 0.0027 25.8 7.3 74 99-191 247-326 (355)
115 PF01985 CRS1_YhbY: CRS1 / Yhb 41.7 26 0.00055 25.3 2.5 58 131-190 10-68 (84)
116 PRK13057 putative lipid kinase 41.4 58 0.0013 28.4 5.2 32 107-144 50-81 (287)
117 KOG1201 Hydroxysteroid 17-beta 40.9 32 0.00069 31.1 3.4 29 42-71 38-66 (300)
118 COG0159 TrpA Tryptophan syntha 40.9 1.2E+02 0.0027 26.9 7.1 129 33-189 6-142 (265)
119 PRK13057 putative lipid kinase 40.7 59 0.0013 28.4 5.1 43 32-77 40-83 (287)
120 smart00870 Asparaginase Aspara 40.5 1.7E+02 0.0037 26.3 8.2 50 107-158 77-131 (323)
121 PRK03378 ppnK inorganic polyph 40.3 1.7E+02 0.0037 26.1 8.1 62 9-74 3-94 (292)
122 PF12831 FAD_oxidored: FAD dep 40.3 23 0.00049 33.0 2.5 27 45-73 2-28 (428)
123 KOG4175 Tryptophan synthase al 40.2 56 0.0012 28.3 4.6 33 120-155 78-110 (268)
124 PRK08862 short chain dehydroge 40.2 1.4E+02 0.0031 24.8 7.3 54 12-73 6-59 (227)
125 PF00106 adh_short: short chai 39.6 50 0.0011 25.4 4.1 30 44-74 2-31 (167)
126 COG1063 Tdh Threonine dehydrog 39.6 1.3E+02 0.0028 27.2 7.4 83 43-128 170-259 (350)
127 COG1064 AdhP Zn-dependent alco 39.5 76 0.0016 29.2 5.7 82 43-129 168-250 (339)
128 PF10727 Rossmann-like: Rossma 39.5 42 0.00092 26.2 3.6 31 8-47 7-37 (127)
129 PRK15484 lipopolysaccharide 1, 39.4 1.9E+02 0.0042 26.0 8.5 72 99-191 268-343 (380)
130 cd01408 SIRT1 SIRT1: Eukaryoti 39.3 84 0.0018 27.0 5.8 70 98-186 166-235 (235)
131 PF00534 Glycos_transf_1: Glyc 39.2 1.4E+02 0.0029 23.0 6.6 72 98-190 83-156 (172)
132 PRK09461 ansA cytoplasmic aspa 39.1 83 0.0018 28.6 6.0 51 106-158 80-135 (335)
133 PLN02591 tryptophan synthase 39.1 1.5E+02 0.0033 25.9 7.4 41 120-164 62-107 (250)
134 COG0252 AnsB L-asparaginase/ar 38.9 51 0.0011 30.4 4.5 34 109-145 102-135 (351)
135 COG0163 UbiX 3-polyprenyl-4-hy 38.4 70 0.0015 27.0 4.9 80 107-187 80-169 (191)
136 PRK13059 putative lipid kinase 38.4 86 0.0019 27.6 5.9 34 107-144 56-89 (295)
137 TIGR03575 selen_PSTK_euk L-ser 38.3 88 0.0019 28.7 6.0 48 137-187 125-173 (340)
138 PF04412 DUF521: Protein of un 38.1 3.5E+02 0.0075 25.5 13.2 143 8-151 178-334 (400)
139 PRK06756 flavodoxin; Provision 38.1 90 0.002 24.2 5.4 15 58-72 105-119 (148)
140 TIGR03449 mycothiol_MshA UDP-N 38.0 1.5E+02 0.0033 26.4 7.6 71 99-190 294-366 (405)
141 cd02191 FtsZ FtsZ is a GTPase 37.6 2.8E+02 0.006 24.8 9.0 66 42-115 85-154 (303)
142 PRK08887 nicotinic acid mononu 37.5 44 0.00094 27.4 3.6 24 11-34 1-24 (174)
143 PRK05723 flavodoxin; Provision 37.4 63 0.0014 25.8 4.4 33 12-47 1-33 (151)
144 cd06353 PBP1_BmpA_Med_like Per 37.2 1.9E+02 0.0041 24.8 7.7 58 9-74 150-207 (258)
145 cd04949 GT1_gtfA_like This fam 37.2 1.2E+02 0.0025 26.7 6.5 68 104-191 275-344 (372)
146 PRK01231 ppnK inorganic polyph 37.0 1.9E+02 0.0042 25.8 7.9 61 10-74 3-93 (295)
147 PLN00141 Tic62-NAD(P)-related 36.3 71 0.0015 26.9 4.8 34 7-48 13-46 (251)
148 PRK09355 hydroxyethylthiazole 36.2 1.5E+02 0.0033 25.7 7.0 42 103-148 50-94 (263)
149 cd04728 ThiG Thiazole synthase 36.1 3E+02 0.0066 24.2 10.7 110 13-145 95-205 (248)
150 PRK07109 short chain dehydroge 36.0 1.7E+02 0.0037 26.0 7.5 57 11-75 8-64 (334)
151 TIGR01182 eda Entner-Doudoroff 36.0 1.9E+02 0.004 24.6 7.2 106 12-129 9-119 (204)
152 PRK06973 nicotinic acid mononu 35.8 60 0.0013 28.2 4.4 31 10-40 20-50 (243)
153 cd03800 GT1_Sucrose_synthase T 35.8 1.1E+02 0.0024 26.7 6.2 69 101-190 296-366 (398)
154 PF09314 DUF1972: Domain of un 35.8 66 0.0014 26.9 4.4 36 11-46 1-37 (185)
155 TIGR01753 flav_short flavodoxi 35.8 90 0.0019 23.5 4.9 9 64-72 107-115 (140)
156 CHL00162 thiG thiamin biosynth 35.4 1.3E+02 0.0027 26.9 6.2 30 101-130 181-210 (267)
157 TIGR01501 MthylAspMutase methy 35.4 1.2E+02 0.0025 24.1 5.6 41 33-74 19-59 (134)
158 PRK07775 short chain dehydroge 35.3 2E+02 0.0043 24.4 7.5 36 8-51 7-42 (274)
159 cd03814 GT1_like_2 This family 35.0 1.2E+02 0.0025 25.8 6.1 69 102-191 261-331 (364)
160 PF11834 DUF3354: Domain of un 35.0 84 0.0018 22.1 4.2 33 109-147 19-51 (69)
161 smart00046 DAGKc Diacylglycero 34.9 94 0.002 23.7 4.9 32 45-77 52-87 (124)
162 cd03807 GT1_WbnK_like This fam 34.9 99 0.0022 25.9 5.5 66 103-191 264-331 (365)
163 cd03818 GT1_ExpC_like This fam 34.8 1.8E+02 0.0039 26.1 7.5 71 99-190 292-364 (396)
164 PRK06756 flavodoxin; Provision 34.8 92 0.002 24.2 4.9 32 12-46 2-33 (148)
165 PRK05782 bifunctional sirohydr 34.7 2.7E+02 0.0059 25.5 8.6 63 11-78 6-74 (335)
166 PRK14572 D-alanyl-alanine synt 34.5 78 0.0017 28.6 5.0 38 12-49 2-39 (347)
167 TIGR00147 lipid kinase, YegS/R 34.3 1.1E+02 0.0023 26.7 5.8 32 45-77 60-92 (293)
168 cd00587 HCP_like The HCP famil 34.3 85 0.0018 27.8 5.0 151 10-186 93-257 (258)
169 PRK14138 NAD-dependent deacety 34.0 1.3E+02 0.0027 26.1 6.1 71 98-190 169-241 (244)
170 PRK03708 ppnK inorganic polyph 33.8 86 0.0019 27.7 5.1 34 12-48 1-34 (277)
171 PF01182 Glucosamine_iso: Gluc 33.8 1.3E+02 0.0029 24.8 6.0 83 103-189 16-110 (199)
172 TIGR02153 gatD_arch glutamyl-t 33.5 1.1E+02 0.0023 28.9 5.8 48 108-157 140-192 (404)
173 PRK05866 short chain dehydroge 33.4 2E+02 0.0044 24.9 7.4 54 12-73 41-94 (293)
174 PRK15427 colanic acid biosynth 33.2 2.2E+02 0.0047 26.1 7.9 69 102-191 293-369 (406)
175 PRK01372 ddl D-alanine--D-alan 33.1 80 0.0017 27.5 4.8 37 12-48 5-41 (304)
176 PRK08264 short chain dehydroge 33.1 2.5E+02 0.0055 22.8 7.6 29 44-73 8-37 (238)
177 PF00549 Ligase_CoA: CoA-ligas 33.0 2.3E+02 0.005 22.9 7.0 50 94-143 58-114 (153)
178 PLN02945 nicotinamide-nucleoti 33.0 1.1E+02 0.0025 26.1 5.6 43 5-47 15-57 (236)
179 TIGR01752 flav_long flavodoxin 32.8 1.1E+02 0.0023 24.6 5.1 20 56-75 100-119 (167)
180 PRK05333 NAD-dependent deacety 32.8 1E+02 0.0022 27.2 5.4 70 98-189 205-276 (285)
181 cd00458 SugarP_isomerase Sugar 32.7 2.6E+02 0.0057 22.4 8.2 45 104-149 16-60 (169)
182 PRK01966 ddl D-alanyl-alanine 32.6 84 0.0018 28.1 4.9 37 11-47 3-39 (333)
183 cd03415 CbiX_CbiC Archaeal sir 32.5 2.4E+02 0.0051 21.9 7.5 58 16-78 5-68 (125)
184 PRK04539 ppnK inorganic polyph 32.4 2.9E+02 0.0063 24.7 8.2 62 9-74 3-99 (296)
185 PRK14568 vanB D-alanine--D-lac 32.3 79 0.0017 28.4 4.7 36 12-47 4-39 (343)
186 PF13614 AAA_31: AAA domain; P 32.3 93 0.002 23.8 4.6 33 12-47 1-33 (157)
187 PRK11780 isoprenoid biosynthes 32.1 57 0.0012 27.8 3.5 36 12-48 2-38 (217)
188 PRK13059 putative lipid kinase 32.0 95 0.0021 27.3 5.1 36 40-76 53-90 (295)
189 COG0794 GutQ Predicted sugar p 31.9 3.2E+02 0.007 23.3 8.2 35 42-76 39-74 (202)
190 PF13380 CoA_binding_2: CoA bi 31.9 62 0.0013 24.6 3.4 31 12-47 1-31 (116)
191 PRK02645 ppnK inorganic polyph 31.9 2.6E+02 0.0057 25.0 7.9 29 45-74 60-88 (305)
192 TIGR01198 pgl 6-phosphoglucono 31.8 3E+02 0.0065 23.4 8.0 42 105-149 25-66 (233)
193 TIGR03451 mycoS_dep_FDH mycoth 31.8 3.7E+02 0.0079 23.8 10.6 31 43-75 178-209 (358)
194 PRK13937 phosphoheptose isomer 31.6 1.2E+02 0.0026 24.9 5.3 32 25-56 21-52 (188)
195 PRK08105 flavodoxin; Provision 31.6 1E+02 0.0023 24.3 4.8 18 55-72 103-120 (149)
196 PF04230 PS_pyruv_trans: Polys 31.6 70 0.0015 26.1 4.0 40 106-145 62-107 (286)
197 PRK04155 chaperone protein Hch 31.5 48 0.001 29.6 3.1 36 108-143 146-186 (287)
198 cd03819 GT1_WavL_like This fam 31.5 1.6E+02 0.0034 25.2 6.4 68 101-189 257-327 (355)
199 COG0300 DltE Short-chain dehyd 31.2 2.3E+02 0.0051 25.0 7.3 62 9-78 4-65 (265)
200 PRK03372 ppnK inorganic polyph 31.0 3E+02 0.0064 24.8 8.1 32 9-43 3-34 (306)
201 TIGR02482 PFKA_ATP 6-phosphofr 30.9 1.7E+02 0.0037 26.3 6.5 58 14-73 63-121 (301)
202 cd07225 Pat_PNPLA6_PNPLA7 Pata 30.9 51 0.0011 29.6 3.2 31 33-65 5-35 (306)
203 TIGR00936 ahcY adenosylhomocys 30.8 1.5E+02 0.0033 27.9 6.4 70 44-123 197-266 (406)
204 cd04261 AAK_AKii-LysC-BS AAK_A 30.7 1.3E+02 0.0028 25.5 5.6 40 17-58 6-47 (239)
205 KOG1718 Dual specificity phosp 30.7 39 0.00085 28.4 2.2 54 106-160 93-156 (198)
206 PRK14077 pnk inorganic polypho 30.6 2.7E+02 0.0059 24.8 7.7 68 1-74 1-95 (287)
207 COG2085 Predicted dinucleotide 30.6 1.2E+02 0.0026 26.1 5.2 52 11-73 1-52 (211)
208 COG0716 FldA Flavodoxins [Ener 30.5 87 0.0019 24.6 4.2 35 11-48 1-35 (151)
209 PRK05476 S-adenosyl-L-homocyst 30.4 1.6E+02 0.0034 27.9 6.4 86 45-148 215-301 (425)
210 PRK06180 short chain dehydroge 30.3 73 0.0016 27.1 4.0 34 11-52 4-37 (277)
211 cd07227 Pat_Fungal_NTE1 Fungal 30.3 39 0.00085 29.8 2.3 30 34-65 1-30 (269)
212 PF13407 Peripla_BP_4: Peripla 30.3 1.1E+02 0.0024 25.2 5.0 40 102-146 50-89 (257)
213 cd06320 PBP1_allose_binding Pe 30.2 1E+02 0.0022 25.7 4.8 33 14-48 2-34 (275)
214 PF12146 Hydrolase_4: Putative 30.2 1.7E+02 0.0037 20.6 5.3 33 12-48 16-48 (79)
215 PF00290 Trp_syntA: Tryptophan 30.2 77 0.0017 27.9 4.1 41 120-163 70-115 (259)
216 PLN02496 probable phosphopanto 29.9 1.3E+02 0.0027 25.8 5.2 89 104-193 93-200 (209)
217 PRK07102 short chain dehydroge 29.9 74 0.0016 26.3 3.9 29 12-48 2-30 (243)
218 COG0205 PfkA 6-phosphofructoki 29.7 1.8E+02 0.0039 26.8 6.6 58 14-73 66-124 (347)
219 PRK13111 trpA tryptophan synth 29.6 2.7E+02 0.0058 24.4 7.4 42 120-164 72-118 (258)
220 PRK07677 short chain dehydroge 29.5 83 0.0018 26.2 4.1 28 13-48 3-30 (252)
221 TIGR01832 kduD 2-deoxy-D-gluco 29.4 82 0.0018 26.0 4.1 29 12-48 6-34 (248)
222 TIGR00236 wecB UDP-N-acetylglu 29.4 3E+02 0.0064 24.4 7.9 75 91-191 257-333 (365)
223 PF03492 Methyltransf_7: SAM d 29.3 47 0.001 30.2 2.7 43 147-189 198-243 (334)
224 KOG1207 Diacetyl reductase/L-x 29.2 75 0.0016 27.1 3.6 30 44-74 9-38 (245)
225 COG1597 LCB5 Sphingosine kinas 29.2 69 0.0015 28.6 3.7 30 110-144 60-90 (301)
226 PF05690 ThiG: Thiazole biosyn 29.1 55 0.0012 28.8 2.9 39 101-145 167-205 (247)
227 PRK13337 putative lipid kinase 29.1 2.9E+02 0.0062 24.3 7.7 31 111-144 60-90 (304)
228 PF01965 DJ-1_PfpI: DJ-1/PfpI 29.0 51 0.0011 25.7 2.6 34 111-144 40-78 (147)
229 PF02729 OTCace_N: Aspartate/o 29.0 1.5E+02 0.0032 23.5 5.3 65 60-143 58-122 (142)
230 PRK04885 ppnK inorganic polyph 29.0 3.1E+02 0.0067 24.1 7.7 57 13-74 2-68 (265)
231 PRK00861 putative lipid kinase 28.9 59 0.0013 28.6 3.2 29 111-144 60-88 (300)
232 PRK05920 aromatic acid decarbo 28.7 1.3E+02 0.0029 25.4 5.2 81 107-188 93-183 (204)
233 KOG3974 Predicted sugar kinase 28.7 4.2E+02 0.0091 23.9 8.3 47 99-149 93-143 (306)
234 COG0148 Eno Enolase [Carbohydr 28.6 2.2E+02 0.0048 27.0 6.9 70 98-168 318-387 (423)
235 cd03798 GT1_wlbH_like This fam 28.6 2.1E+02 0.0046 23.8 6.5 72 100-192 271-344 (377)
236 TIGR02690 resist_ArsH arsenica 28.6 1.3E+02 0.0028 25.8 5.1 38 8-46 23-60 (219)
237 PF14947 HTH_45: Winged helix- 28.5 68 0.0015 22.5 2.9 41 149-190 33-73 (77)
238 cd02072 Glm_B12_BD B12 binding 28.5 1.8E+02 0.0039 22.8 5.6 41 33-74 17-57 (128)
239 PRK05854 short chain dehydroge 28.5 83 0.0018 27.6 4.1 33 12-52 15-47 (313)
240 PF00710 Asparaginase: Asparag 28.3 1.4E+02 0.003 26.8 5.5 37 106-144 71-107 (313)
241 PRK14072 6-phosphofructokinase 28.3 2.1E+02 0.0046 26.9 7.0 56 14-73 72-138 (416)
242 cd01412 SIRT5_Af1_CobB SIRT5_A 28.3 2.6E+02 0.0057 23.4 7.0 67 99-186 156-223 (224)
243 PLN02740 Alcohol dehydrogenase 28.2 1.7E+02 0.0038 26.3 6.3 83 43-128 200-289 (381)
244 TIGR03702 lip_kinase_YegS lipi 28.1 1.6E+02 0.0034 25.8 5.8 33 111-144 55-87 (293)
245 PF03358 FMN_red: NADPH-depend 28.0 1.1E+02 0.0024 23.5 4.4 47 99-145 62-114 (152)
246 PRK06194 hypothetical protein; 28.0 3.1E+02 0.0068 23.1 7.6 60 1-73 1-60 (287)
247 cd04180 UGPase_euk_like Eukary 27.8 1.5E+02 0.0033 25.9 5.6 69 110-190 2-76 (266)
248 PLN02565 cysteine synthase 27.7 4.5E+02 0.0097 23.5 10.2 45 31-76 161-208 (322)
249 PLN02871 UDP-sulfoquinovose:DA 27.7 2.4E+02 0.0052 26.2 7.2 74 99-190 323-398 (465)
250 KOG2467 Glycine/serine hydroxy 27.4 74 0.0016 30.0 3.6 36 31-66 329-374 (477)
251 PHA03392 egt ecdysteroid UDP-g 27.3 5.6E+02 0.012 24.6 11.7 141 4-164 257-408 (507)
252 PRK07308 flavodoxin; Validated 27.3 1.3E+02 0.0027 23.3 4.6 10 14-23 51-60 (146)
253 PRK14571 D-alanyl-alanine synt 27.2 1.3E+02 0.0028 26.3 5.1 36 13-48 2-37 (299)
254 TIGR02467 CbiE precorrin-6y C5 27.2 3.5E+02 0.0076 22.2 9.5 112 30-144 55-174 (204)
255 PRK09271 flavodoxin; Provision 27.2 1.2E+02 0.0025 24.1 4.4 31 13-46 2-32 (160)
256 PRK07035 short chain dehydroge 27.2 86 0.0019 26.0 3.8 31 12-50 9-39 (252)
257 cd03802 GT1_AviGT4_like This f 27.1 3.7E+02 0.008 22.7 7.9 66 102-190 238-306 (335)
258 PRK07454 short chain dehydroge 27.1 3.5E+02 0.0075 22.1 7.5 66 9-82 4-69 (241)
259 PF00258 Flavodoxin_1: Flavodo 27.1 71 0.0015 24.3 3.1 38 9-48 85-123 (143)
260 cd03812 GT1_CapH_like This fam 27.0 2.5E+02 0.0054 24.0 6.8 68 102-191 261-330 (358)
261 cd00384 ALAD_PBGS Porphobilino 27.0 4.9E+02 0.011 23.8 9.8 130 24-167 132-283 (314)
262 TIGR02822 adh_fam_2 zinc-bindi 26.9 84 0.0018 27.8 3.9 31 43-75 167-197 (329)
263 cd06300 PBP1_ABC_sugar_binding 26.9 1.3E+02 0.0027 25.1 4.8 27 14-42 2-28 (272)
264 PRK05867 short chain dehydroge 26.8 3.3E+02 0.0072 22.5 7.4 54 12-73 10-63 (253)
265 PRK02649 ppnK inorganic polyph 26.7 3.5E+02 0.0077 24.3 7.8 32 11-45 1-32 (305)
266 cd03148 GATase1_EcHsp31_like T 26.7 50 0.0011 28.4 2.3 34 110-143 98-135 (232)
267 cd00763 Bacterial_PFK Phosphof 26.7 2.9E+02 0.0062 25.0 7.3 57 14-73 64-121 (317)
268 PRK06703 flavodoxin; Provision 26.6 1.2E+02 0.0027 23.5 4.4 32 12-46 2-33 (151)
269 PRK09291 short chain dehydroge 26.4 98 0.0021 25.6 4.0 32 12-51 3-34 (257)
270 cd03809 GT1_mtfB_like This fam 26.3 4E+02 0.0086 22.5 11.0 66 102-190 267-334 (365)
271 TIGR00642 mmCoA_mut_beta methy 26.3 1.2E+02 0.0026 30.2 5.1 43 12-58 547-589 (619)
272 cd03147 GATase1_Ydr533c_like T 26.3 48 0.001 28.5 2.1 35 110-144 96-134 (231)
273 cd06313 PBP1_ABC_sugar_binding 26.1 1.3E+02 0.0027 25.4 4.7 38 103-145 51-88 (272)
274 cd04246 AAK_AK-DapG-like AAK_A 26.1 1.6E+02 0.0035 24.9 5.3 35 17-52 6-42 (239)
275 PRK06924 short chain dehydroge 26.0 1.2E+02 0.0025 25.1 4.4 29 11-47 1-29 (251)
276 TIGR00147 lipid kinase, YegS/R 26.0 1.7E+02 0.0037 25.3 5.6 33 108-145 58-91 (293)
277 PRK14106 murD UDP-N-acetylmura 25.9 2.4E+02 0.0052 26.0 6.9 29 45-75 8-36 (450)
278 PLN02586 probable cinnamyl alc 25.8 2.2E+02 0.0047 25.5 6.4 83 43-128 185-268 (360)
279 PLN02271 serine hydroxymethylt 25.8 83 0.0018 31.1 3.8 41 31-71 443-493 (586)
280 PF09353 DUF1995: Domain of un 25.8 3.9E+02 0.0084 22.2 9.7 38 108-151 98-135 (209)
281 PTZ00187 succinyl-CoA syntheta 25.8 3.6E+02 0.0078 24.5 7.7 90 95-190 210-313 (317)
282 cd03821 GT1_Bme6_like This fam 25.7 3.3E+02 0.0071 22.8 7.2 69 100-191 274-344 (375)
283 PRK09004 FMN-binding protein M 25.5 1.9E+02 0.0042 22.7 5.4 22 26-47 96-117 (146)
284 COG0112 GlyA Glycine/serine hy 25.4 66 0.0014 30.3 2.9 41 30-70 291-341 (413)
285 PRK10494 hypothetical protein; 25.3 1.6E+02 0.0034 25.7 5.2 12 107-118 78-89 (259)
286 PRK08217 fabG 3-ketoacyl-(acyl 25.3 1E+02 0.0022 25.3 3.9 29 12-48 6-34 (253)
287 cd05009 SIS_GlmS_GlmD_2 SIS (S 25.2 3E+02 0.0066 20.8 6.8 91 32-145 3-97 (153)
288 TIGR00715 precor6x_red precorr 25.1 2.8E+02 0.0061 24.2 6.7 17 174-190 239-255 (256)
289 PRK14075 pnk inorganic polypho 25.1 2.8E+02 0.006 24.1 6.7 54 12-75 1-70 (256)
290 PRK08339 short chain dehydroge 25.1 1.1E+02 0.0024 25.9 4.2 29 12-48 9-37 (263)
291 cd01400 6PGL 6PGL: 6-Phosphogl 25.0 3.4E+02 0.0073 22.8 7.1 44 104-149 19-62 (219)
292 PRK02649 ppnK inorganic polyph 25.0 1.6E+02 0.0035 26.5 5.3 53 106-164 67-126 (305)
293 PRK12367 short chain dehydroge 24.9 1E+02 0.0023 26.1 4.0 28 45-73 17-44 (245)
294 cd01411 SIR2H SIR2H: Uncharact 24.8 93 0.002 26.5 3.6 45 98-146 162-206 (225)
295 PRK12367 short chain dehydroge 24.7 1.4E+02 0.003 25.3 4.7 40 4-51 7-46 (245)
296 cd05212 NAD_bind_m-THF_DH_Cycl 24.6 3.5E+02 0.0077 21.3 9.2 103 9-126 26-131 (140)
297 TIGR01205 D_ala_D_alaTIGR D-al 24.5 1E+02 0.0022 26.9 3.8 38 14-52 2-40 (315)
298 cd03805 GT1_ALG2_like This fam 24.4 3.1E+02 0.0068 24.0 7.1 67 102-190 294-362 (392)
299 PRK00071 nadD nicotinic acid m 24.4 1.2E+02 0.0026 25.1 4.1 27 11-37 3-29 (203)
300 PF09587 PGA_cap: Bacterial ca 24.4 1.3E+02 0.0027 25.7 4.4 21 32-52 205-225 (250)
301 COG1582 FlgEa Uncharacterized 24.3 58 0.0012 22.8 1.8 24 169-192 34-57 (67)
302 PRK02261 methylaspartate mutas 24.3 3.5E+02 0.0076 21.1 8.5 41 33-74 21-61 (137)
303 PRK13054 lipid kinase; Reviewe 24.2 2.1E+02 0.0045 25.1 5.8 35 108-144 57-91 (300)
304 PRK00481 NAD-dependent deacety 24.1 2.3E+02 0.005 24.2 6.0 70 98-188 168-238 (242)
305 PF00483 NTP_transferase: Nucl 24.0 1.4E+02 0.0029 24.8 4.4 63 112-190 3-69 (248)
306 PRK03708 ppnK inorganic polyph 23.9 4E+02 0.0086 23.5 7.5 27 46-74 61-87 (277)
307 PRK12314 gamma-glutamyl kinase 23.9 1.3E+02 0.0029 26.2 4.4 44 11-54 9-61 (266)
308 PF01202 SKI: Shikimate kinase 23.9 1.4E+02 0.0031 23.4 4.3 39 34-74 54-92 (158)
309 KOG1584 Sulfotransferase [Gene 23.7 1.7E+02 0.0036 26.5 5.1 58 115-191 151-214 (297)
310 PF01320 Colicin_Pyocin: Colic 23.6 75 0.0016 23.3 2.4 45 143-191 27-76 (85)
311 PRK07890 short chain dehydroge 23.6 3.7E+02 0.008 22.1 7.1 54 12-73 6-59 (258)
312 cd04197 eIF-2B_epsilon_N The N 23.5 1.7E+02 0.0036 24.1 4.9 63 111-190 3-68 (217)
313 PF03486 HI0933_like: HI0933-l 23.5 53 0.0011 30.7 2.0 25 45-71 3-27 (409)
314 PRK15454 ethanol dehydrogenase 23.4 2E+02 0.0044 26.6 5.8 13 106-118 105-117 (395)
315 PRK06300 enoyl-(acyl carrier p 23.4 1.1E+02 0.0023 27.3 3.8 16 33-48 24-39 (299)
316 CHL00139 rpl18 ribosomal prote 23.3 2.9E+02 0.0063 21.1 5.7 40 29-68 60-107 (109)
317 PRK08589 short chain dehydroge 23.3 1.1E+02 0.0024 25.9 3.9 54 12-74 7-60 (272)
318 PLN02275 transferase, transfer 23.3 5E+02 0.011 23.2 8.3 70 99-189 298-370 (371)
319 PRK07062 short chain dehydroge 23.2 1.1E+02 0.0024 25.5 3.8 31 12-50 9-39 (265)
320 PRK12481 2-deoxy-D-gluconate 3 23.2 1.2E+02 0.0026 25.4 4.0 31 12-50 9-39 (251)
321 PRK08057 cobalt-precorrin-6x r 23.2 3E+02 0.0064 24.0 6.5 65 99-190 180-247 (248)
322 TIGR02483 PFK_mixed phosphofru 23.2 2.4E+02 0.0053 25.6 6.1 57 15-73 66-123 (324)
323 TIGR03366 HpnZ_proposed putati 23.1 2.1E+02 0.0045 24.5 5.5 83 43-128 122-208 (280)
324 PRK09072 short chain dehydroge 23.1 1.2E+02 0.0025 25.5 3.9 29 12-48 6-34 (263)
325 TIGR00253 RNA_bind_YhbY putati 23.1 2.4E+02 0.0053 20.9 5.1 53 136-190 15-68 (95)
326 TIGR02076 pyrH_arch uridylate 23.1 1E+02 0.0022 25.8 3.5 36 17-52 5-43 (221)
327 COG2242 CobL Precorrin-6B meth 23.0 2.1E+02 0.0046 24.1 5.3 120 32-164 24-153 (187)
328 TIGR00065 ftsZ cell division p 23.0 5.1E+02 0.011 23.7 8.3 70 38-115 98-171 (349)
329 PRK07814 short chain dehydroge 23.0 1.2E+02 0.0026 25.5 3.9 33 11-51 10-42 (263)
330 PRK07102 short chain dehydroge 22.9 1.5E+02 0.0032 24.4 4.5 30 44-74 3-32 (243)
331 cd03133 GATase1_ES1 Type 1 glu 22.7 1.1E+02 0.0024 26.1 3.6 12 111-122 85-96 (213)
332 PRK05723 flavodoxin; Provision 22.4 1.7E+02 0.0038 23.2 4.6 37 12-48 85-121 (151)
333 PRK08303 short chain dehydroge 22.3 1.1E+02 0.0024 26.9 3.8 31 12-50 9-39 (305)
334 cd06318 PBP1_ABC_sugar_binding 22.3 1.9E+02 0.0041 24.1 5.1 38 103-145 51-88 (282)
335 PRK12829 short chain dehydroge 22.3 1.3E+02 0.0027 25.0 3.9 28 12-47 12-39 (264)
336 PF12965 DUF3854: Domain of un 22.2 3.8E+02 0.0083 20.9 6.6 49 12-61 69-124 (130)
337 TIGR01369 CPSaseII_lrg carbamo 22.2 9.5E+02 0.021 25.4 11.8 18 172-189 177-194 (1050)
338 PRK05693 short chain dehydroge 22.1 1.3E+02 0.0028 25.4 4.0 30 12-49 2-31 (274)
339 PRK13146 hisH imidazole glycer 22.1 2.4E+02 0.0052 23.5 5.6 19 55-73 65-83 (209)
340 cd04260 AAK_AKi-DapG-BS AAK_AK 22.1 1.1E+02 0.0024 26.2 3.6 28 16-44 5-32 (244)
341 PRK12361 hypothetical protein; 22.1 1E+02 0.0022 29.7 3.7 29 111-144 300-328 (547)
342 PRK06914 short chain dehydroge 22.1 1.2E+02 0.0026 25.6 3.8 33 12-52 4-36 (280)
343 PRK07041 short chain dehydroge 22.1 1E+02 0.0022 25.1 3.2 27 46-73 1-27 (230)
344 TIGR02991 ectoine_eutB ectoine 22.0 1.5E+02 0.0032 26.5 4.5 45 31-76 157-203 (317)
345 PRK10343 RNA-binding protein Y 22.0 2.5E+02 0.0055 21.0 5.0 52 136-189 17-69 (97)
346 PRK08226 short chain dehydroge 21.9 4.6E+02 0.01 21.7 7.9 64 10-82 5-68 (263)
347 PRK06182 short chain dehydroge 21.9 1.3E+02 0.0028 25.4 3.9 31 12-50 4-34 (273)
348 PLN02494 adenosylhomocysteinas 21.9 3.4E+02 0.0075 26.2 7.1 73 44-126 256-329 (477)
349 KOG0503 Asparaginase [Amino ac 21.9 1.4E+02 0.003 27.8 4.2 37 106-145 120-156 (368)
350 PRK09250 fructose-bisphosphate 21.9 6.4E+02 0.014 23.3 11.0 97 32-128 181-301 (348)
351 PF03721 UDPG_MGDP_dh_N: UDP-g 21.8 1.1E+02 0.0024 25.1 3.4 25 47-73 5-29 (185)
352 PRK10537 voltage-gated potassi 21.8 6.6E+02 0.014 23.4 10.1 94 42-143 240-335 (393)
353 PF07287 DUF1446: Protein of u 21.8 2.4E+02 0.0052 26.2 5.8 53 23-75 51-107 (362)
354 cd03817 GT1_UGDG_like This fam 21.7 4.7E+02 0.01 21.9 7.4 40 99-146 270-311 (374)
355 PF13604 AAA_30: AAA domain; P 21.7 3E+02 0.0066 22.5 6.1 35 43-77 19-56 (196)
356 smart00516 SEC14 Domain in hom 21.7 2.5E+02 0.0055 21.2 5.3 65 120-189 79-147 (158)
357 PRK08177 short chain dehydroge 21.7 1.7E+02 0.0038 23.8 4.6 31 12-50 2-32 (225)
358 cd04962 GT1_like_5 This family 21.7 3.1E+02 0.0067 23.7 6.4 68 102-190 265-334 (371)
359 PRK03910 D-cysteine desulfhydr 21.6 2.3E+02 0.0049 25.3 5.6 58 18-76 156-219 (331)
360 PRK01231 ppnK inorganic polyph 21.6 1.8E+02 0.0039 25.9 4.9 38 107-150 62-101 (295)
361 PF00290 Trp_syntA: Tryptophan 21.5 5.6E+02 0.012 22.5 8.7 49 93-142 148-203 (259)
362 cd06309 PBP1_YtfQ_like Peripla 21.5 1.9E+02 0.0041 24.1 4.9 38 103-145 51-88 (273)
363 PRK14077 pnk inorganic polypho 21.5 2.2E+02 0.0048 25.3 5.5 52 107-164 64-122 (287)
364 PLN02970 serine racemase 21.3 1.9E+02 0.0041 26.0 5.0 46 30-76 164-211 (328)
365 PRK08979 acetolactate synthase 21.3 5.3E+02 0.011 24.9 8.4 86 31-120 195-285 (572)
366 PRK00625 shikimate kinase; Pro 21.3 3.1E+02 0.0066 22.3 5.9 78 34-114 65-149 (173)
367 TIGR00060 L18_bact ribosomal p 21.2 3.9E+02 0.0085 20.6 7.2 40 29-68 65-112 (114)
368 PRK12824 acetoacetyl-CoA reduc 21.2 2E+02 0.0042 23.5 4.8 31 10-48 1-31 (245)
369 PF02502 LacAB_rpiB: Ribose/Ga 21.2 1.8E+02 0.0039 23.1 4.4 47 13-61 27-76 (140)
370 cd03132 GATase1_catalase Type 21.2 2.9E+02 0.0063 20.9 5.5 62 109-182 64-129 (142)
371 cd00363 PFK Phosphofructokinas 21.1 3.4E+02 0.0073 24.7 6.7 55 15-73 65-127 (338)
372 PRK14573 bifunctional D-alanyl 21.0 1.6E+02 0.0035 29.9 5.0 38 10-47 450-487 (809)
373 cd06311 PBP1_ABC_sugar_binding 21.0 2.4E+02 0.0052 23.4 5.4 38 103-145 56-93 (274)
374 cd02115 AAK Amino Acid Kinases 21.0 1.8E+02 0.0039 24.3 4.6 37 17-55 4-42 (248)
375 TIGR03492 conserved hypothetic 20.9 6.6E+02 0.014 23.1 10.9 33 102-145 291-323 (396)
376 PF03975 CheD: CheD chemotacti 20.9 2.7E+02 0.006 21.0 5.2 41 7-47 35-81 (114)
377 PRK07023 short chain dehydroge 20.8 1.7E+02 0.0036 24.1 4.4 30 11-48 1-30 (243)
378 PF09345 DUF1987: Domain of un 20.8 1.5E+02 0.0032 22.3 3.5 58 146-205 24-86 (99)
379 PF02571 CbiJ: Precorrin-6x re 20.8 5.6E+02 0.012 22.2 10.9 63 99-188 184-249 (249)
380 PF04016 DUF364: Domain of unk 20.7 3.5E+02 0.0076 21.4 6.0 76 98-189 53-131 (147)
381 PF03205 MobB: Molybdopterin g 20.7 1.9E+02 0.004 22.6 4.4 58 12-74 1-64 (140)
382 cd03811 GT1_WabH_like This fam 20.5 3.1E+02 0.0067 22.6 6.0 67 103-190 259-330 (353)
383 PRK05593 rplR 50S ribosomal pr 20.5 3.2E+02 0.0069 21.1 5.5 39 30-68 69-115 (117)
384 PRK08340 glucose-1-dehydrogena 20.4 1.4E+02 0.0031 24.9 3.9 30 13-50 2-31 (259)
385 PRK05583 ribosomal protein L7A 20.4 3E+02 0.0064 20.6 5.2 44 106-157 56-99 (104)
386 PRK07523 gluconate 5-dehydroge 20.3 4.9E+02 0.011 21.4 7.6 71 4-82 3-73 (255)
387 COG4221 Short-chain alcohol de 20.2 1.5E+02 0.0032 26.1 3.9 38 33-73 20-58 (246)
388 PRK07063 short chain dehydroge 20.2 1.5E+02 0.0032 24.7 3.9 29 12-48 8-36 (260)
389 TIGR00035 asp_race aspartate r 20.2 5.1E+02 0.011 21.7 7.2 78 112-190 4-97 (229)
390 COG1028 FabG Dehydrogenases wi 20.2 1.6E+02 0.0034 24.3 4.0 33 11-51 5-37 (251)
391 TIGR03325 BphB_TodD cis-2,3-di 20.1 1.4E+02 0.0031 24.9 3.9 10 108-117 80-89 (262)
392 cd05007 SIS_Etherase N-acetylm 20.1 1.1E+02 0.0025 26.5 3.3 33 26-58 33-65 (257)
393 PRK09496 trkA potassium transp 20.1 3.7E+02 0.008 24.7 6.9 89 27-118 216-308 (453)
394 PRK06171 sorbitol-6-phosphate 20.1 1.5E+02 0.0032 24.8 3.9 30 43-73 10-39 (266)
395 PLN02564 6-phosphofructokinase 20.1 3.2E+02 0.0069 26.4 6.5 52 15-73 154-211 (484)
No 1
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=100.00 E-value=3.1e-54 Score=357.96 Aligned_cols=178 Identities=48% Similarity=0.851 Sum_probs=170.0
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEcCCCcChhHHHHHHHHhcCCcEEEEeCCcccccccCCCCCceE
Q 039983 12 KRVCVFCGSSPDYKYCYRKAAVDLGNELVSRGLDLVYGGGSVGLMGLISEEVHRGGRHVLGIIPKALMKKELTGVTLGEV 91 (220)
Q Consensus 12 ~~I~Vfgss~~~~~~~~~~~A~~lG~~lA~~g~~lVtGGg~~GlM~ava~gA~~~gG~viGv~P~~~~~~e~~~~~~~~~ 91 (220)
++|||||||+.++++.|++.|++||++||++|++||||||..|+|+++++||+++||+|+||+|..+..++.+++.+++.
T Consensus 1 ~~i~V~~~s~~~~~~~~~~~A~~lG~~la~~g~~lV~GGg~~GlM~a~a~ga~~~gG~viGi~p~~l~~~~~~~~~~~~~ 80 (178)
T TIGR00730 1 KTVCVYCGSSPGGNAAYKELAAELGAYLAGQGWGLVYGGGRVGLMGAIADAAMENGGTAVGVNPSGLFSGEVVHQNLTEL 80 (178)
T ss_pred CEEEEECcCCCCCCcHHHHHHHHHHHHHHHCCCEEEECCChHhHHHHHHHHHHhcCCeEEEecchhhhhhhccCCCCCce
Confidence 47999999999999999999999999999999999999994499999999999999999999998877677777778888
Q ss_pred eecCCHHHHHHHHHHhCCeEEEecCCcccHHHHHHHHHHHHhccCCCcEEEEcCCCCchhHHHHHHHHHHcCCCCccccC
Q 039983 92 KPVDHMHQRKAEMARNADCFIALPGGFGTLEELFEVTTWSQLGIHNKPVGLINVEGYYDPILNFIDKSIDEGFIYPSQRS 171 (220)
Q Consensus 92 ~~~~~~~~Rk~~~~~~sda~IvlpGG~GTL~El~~~~t~~qlg~~~kPIill~~~g~~~~l~~~l~~~~~~g~i~~~~~~ 171 (220)
+++.+|++||..|++.|||||+||||+|||+|++++|+|.|+++++|||+++|.+|||++|++|+++|+++||++++..+
T Consensus 81 i~~~~~~~Rk~~m~~~sda~I~lPGG~GTL~El~e~~~~~qlg~~~kPiil~n~~g~~~~l~~~l~~~~~~gfi~~~~~~ 160 (178)
T TIGR00730 81 IEVNGMHERKAMMAELADAFIAMPGGFGTLEELFEVLTWAQLGIHQKPIILFNVNGHFDGLVEWLKYSIQEGFISESHLK 160 (178)
T ss_pred EEECCHHHHHHHHHHhCCEEEEcCCCcchHHHHHHHHHHHHcCCCCCCEEEECCcchHHHHHHHHHHHHHCCCCCHHHcC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEcCCHHHHHHHHHhh
Q 039983 172 IIVSASNAKELVQKLEDY 189 (220)
Q Consensus 172 ~i~~~~d~ee~~~~l~~~ 189 (220)
.++++||++|++++|++|
T Consensus 161 ~~~~~d~~~e~~~~i~~~ 178 (178)
T TIGR00730 161 LIHVVSRPDELIEQVQNY 178 (178)
T ss_pred cEEEcCCHHHHHHHHHhC
Confidence 999999999999999764
No 2
>COG1611 Predicted Rossmann fold nucleotide-binding protein [General function prediction only]
Probab=100.00 E-value=5.3e-45 Score=308.63 Aligned_cols=189 Identities=35% Similarity=0.633 Sum_probs=171.4
Q ss_pred hhhhhcCCCceEEEEcCCCCCCCHH-HHHHHHHHHHHHHHCCCeEEEcCCCcChhHHHHHHHHhcCCcEEEEeCCccccc
Q 039983 3 EKKEAKSRFKRVCVFCGSSPDYKYC-YRKAAVDLGNELVSRGLDLVYGGGSVGLMGLISEEVHRGGRHVLGIIPKALMKK 81 (220)
Q Consensus 3 ~~~~~~~~~~~I~Vfgss~~~~~~~-~~~~A~~lG~~lA~~g~~lVtGGg~~GlM~ava~gA~~~gG~viGv~P~~~~~~ 81 (220)
.+...+..+++|||||||+.+.++. ||+.|++||+.|+++|+.|+||||+ |+|+|+++||+++||.||||+|......
T Consensus 6 ~~~~~~~~~~~i~V~~gs~~~~~~~~~~~~a~~lg~~la~~g~~V~tGG~~-GiMea~~~gA~~~gg~~vGi~p~~~~~~ 84 (205)
T COG1611 6 FARLLFIGIRQIVVICGSARGIEPEEYYELARELGRELAKRGLLVITGGGP-GVMEAVARGALEAGGLVVGILPGLLHEQ 84 (205)
T ss_pred hhhhcccCcceEEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEeCCch-hhhhHHHHHHHHcCCeEEEecCCCchhh
Confidence 3445566789999999999766666 9999999999999999888888888 9999999999999999999999876555
Q ss_pred ccCCCCCceEeecCCHHHHHHHHHHhCCeEEEecCCcccHHHHHHHHHHHHhccC--CCcEEEEcCCCCchhHHHHHH-H
Q 039983 82 ELTGVTLGEVKPVDHMHQRKAEMARNADCFIALPGGFGTLEELFEVTTWSQLGIH--NKPVGLINVEGYYDPILNFID-K 158 (220)
Q Consensus 82 e~~~~~~~~~~~~~~~~~Rk~~~~~~sda~IvlpGG~GTL~El~~~~t~~qlg~~--~kPIill~~~g~~~~l~~~l~-~ 158 (220)
+.++...+++++..+|++||..|+++|||||++|||+||++|+|++|+|.|++.+ .+|+++++.++||+++.++++ +
T Consensus 85 e~~~~~~~~l~~~~~~~~Rk~~~~~~ada~V~~pGG~GTleEl~e~lt~~q~g~~~l~~~~~i~~~~~~~~~~~~~~d~~ 164 (205)
T COG1611 85 EPPNYEVIELITGMDFAERKRAMVRSADAFIVLPGGFGTLEELFEALTLGQTGVHALTPPPLILNGNGFWEPLLEFLDPH 164 (205)
T ss_pred ccCccccceeeecCCHHHHHHHHHHhCCEEEEeCCCcchHHHHHHHHHHhhCCcccCCCCcEEecchHHHHHHHHHhCHH
Confidence 5334445778899999999999999999999999999999999999999999988 888888999999999999998 8
Q ss_pred HHHcCCCCccccCcEEEcCCHHHHHHHHHhhcCC
Q 039983 159 SIDEGFIYPSQRSIIVSASNAKELVQKLEDYVPS 192 (220)
Q Consensus 159 ~~~~g~i~~~~~~~i~~~~d~ee~~~~l~~~~~~ 192 (220)
++.++++++...+++++++|++++++.+.++.++
T Consensus 165 ~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (205)
T COG1611 165 LIVEGLISEADRELLIVVDDAEEAIDAILKYLPP 198 (205)
T ss_pred HHHhhcCChhhhhheeeecCHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999876
No 3
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=100.00 E-value=1.2e-41 Score=278.06 Aligned_cols=157 Identities=24% Similarity=0.358 Sum_probs=135.5
Q ss_pred CceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEcCCCcChhHHHHHHHHhcCCcEEEEeCCcccccccCCCCCce
Q 039983 11 FKRVCVFCGSSPDYKYCYRKAAVDLGNELVSRGLDLVYGGGSVGLMGLISEEVHRGGRHVLGIIPKALMKKELTGVTLGE 90 (220)
Q Consensus 11 ~~~I~Vfgss~~~~~~~~~~~A~~lG~~lA~~g~~lVtGGg~~GlM~ava~gA~~~gG~viGv~P~~~~~~e~~~~~~~~ 90 (220)
|++|||||||+. ++.+++.|++||+.||++|++|||||+. |+|++++++|+++||+||||+|..+. ..+++.+
T Consensus 1 ~~~I~V~gss~~--~~~~~~~A~~lg~~La~~g~~lv~Gg~~-GlM~a~a~ga~~~gg~viGVlp~~l~----~~~~~~~ 73 (159)
T TIGR00725 1 MVQIGVIGSSNK--SEELYEIAYRLGKELAKKGHILINGGRT-GVMEAVSKGAREAGGLVVGILPDEDF----AGNPYLT 73 (159)
T ss_pred CeEEEEEeCCCC--ChHHHHHHHHHHHHHHHCCCEEEcCCch-hHHHHHHHHHHHCCCeEEEECChhhc----cCCCCce
Confidence 578999999984 7899999999999999999999999888 99999999999999999999998653 2334444
Q ss_pred Eee-cCCHHHHHHHHHHhCCeEEEecCCcccHHHHHHHHHHHHhccCCCcEEEEcCCCCchhHHHHHHHHHHcCCCCccc
Q 039983 91 VKP-VDHMHQRKAEMARNADCFIALPGGFGTLEELFEVTTWSQLGIHNKPVGLINVEGYYDPILNFIDKSIDEGFIYPSQ 169 (220)
Q Consensus 91 ~~~-~~~~~~Rk~~~~~~sda~IvlpGG~GTL~El~~~~t~~qlg~~~kPIill~~~g~~~~l~~~l~~~~~~g~i~~~~ 169 (220)
.++ ...+++||++|+++|||||++|||+|||+|++++|+ ++|||+++|.+|||+++++++ +.+.+|+++
T Consensus 74 ~~i~~~~~~~Rk~~m~~~sda~IvlpGG~GTL~E~~~a~~------~~kpv~~l~~~g~~~~~l~~~--~~~~~~~~~-- 143 (159)
T TIGR00725 74 IKVKTGMNFARNFILVRSADVVVSVGGGYGTAIEILGAYA------LGGPVVVLRGTGGWTDRLSQV--LIEGVYLDE-- 143 (159)
T ss_pred EEEECCCcchHHHHHHHHCCEEEEcCCchhHHHHHHHHHH------cCCCEEEEECCCcchHHHHHH--Hhccccccc--
Confidence 444 444488999999999999999999999999999998 589999999999999998875 444444442
Q ss_pred cCcEEEcCCHHHHHHHH
Q 039983 170 RSIIVSASNAKELVQKL 186 (220)
Q Consensus 170 ~~~i~~~~d~ee~~~~l 186 (220)
.+.+++|++|+++++
T Consensus 144 --~~~~~~~~~e~~~~~ 158 (159)
T TIGR00725 144 --RVIVEITPAEAVKLA 158 (159)
T ss_pred --eeEecCCHHHHHHhh
Confidence 699999999999875
No 4
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=100.00 E-value=7.6e-39 Score=254.14 Aligned_cols=131 Identities=42% Similarity=0.767 Sum_probs=124.2
Q ss_pred hHHHHHHHHhcCCcEEEEeCCcccc-cccCCCCCceEeecCCHHHHHHHHHHhCCeEEEecCCcccHHHHHHHHHHHHhc
Q 039983 56 MGLISEEVHRGGRHVLGIIPKALMK-KELTGVTLGEVKPVDHMHQRKAEMARNADCFIALPGGFGTLEELFEVTTWSQLG 134 (220)
Q Consensus 56 M~ava~gA~~~gG~viGv~P~~~~~-~e~~~~~~~~~~~~~~~~~Rk~~~~~~sda~IvlpGG~GTL~El~~~~t~~qlg 134 (220)
|+|+++||+++||+|+||+|....+ ++.+++.+++++.+++|++||..|+++|||||++|||+|||+|+|++|+|+|++
T Consensus 1 M~a~~~ga~~~gG~viGi~p~~~~~~~~~~~~~~~~~~~~~~~~~Rk~~m~~~sda~I~lPGG~GTl~El~~~~~~~~l~ 80 (133)
T PF03641_consen 1 MGAVAKGAKEAGGRVIGIIPEFLFPFEEPPNPYVTELIIVDDMFERKEIMIESSDAFIALPGGIGTLDELFEALTLMQLG 80 (133)
T ss_dssp HHHHHHHHHHTTTTEEEEEETTGTTTTTTCCTTSSEEEEESSHHHHHHHHHHHESEEEEES-SHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHcCCeEEEEecCccccccccCCcccCceeEeCChHHHHHHHHHhCCEEEEEecCCchHHHHHHHHHHHhhc
Confidence 9999999999999999999998888 666677778899999999999999999999999999999999999999999999
Q ss_pred cCCC-cEEEEcCCCCchhHHHHHHHHHHcCCCCccccCcEEEcCCHHHHHHHH
Q 039983 135 IHNK-PVGLINVEGYYDPILNFIDKSIDEGFIYPSQRSIIVSASNAKELVQKL 186 (220)
Q Consensus 135 ~~~k-PIill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~d~ee~~~~l 186 (220)
.++| ||+|+|.+|||+++++|+++|.++||+++++.+.+++++|++|++++|
T Consensus 81 ~~~~~Piil~~~~g~w~~l~~~l~~~~~~g~i~~~~~~~~~~~d~~~e~~~~i 133 (133)
T PF03641_consen 81 RHNKVPIILLNIDGFWDPLLEFLDRMIEEGFISPDDLDLLHFVDDPEEALEYI 133 (133)
T ss_dssp SSTS-EEEEEECGGCCHHHHHHHHHHHHTTSSSHHHHCCEEEESSHHHHHHHH
T ss_pred cccCCCEEEeCCcchHHHHHHHHHHHHHCCCCCHHHCCeEEEeCCHHHHHhhC
Confidence 8877 999999999999999999999999999999999999999999999976
No 5
>TIGR00732 dprA DNA protecting protein DprA. Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function.
Probab=99.63 E-value=2.2e-14 Score=122.96 Aligned_cols=155 Identities=15% Similarity=0.182 Sum_probs=116.1
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEcCCCcChhHHHHHHHHhcCCcEEEEeCCccc---cccc-----
Q 039983 12 KRVCVFCGSSPDYKYCYRKAAVDLGNELVSRGLDLVYGGGSVGLMGLISEEVHRGGRHVLGIIPKALM---KKEL----- 83 (220)
Q Consensus 12 ~~I~Vfgss~~~~~~~~~~~A~~lG~~lA~~g~~lVtGGg~~GlM~ava~gA~~~gG~viGv~P~~~~---~~e~----- 83 (220)
+.|+|.|+... .+...+.++++++.|+++|++||+|++. |+|.++.++|+++||.+|+|+|..+. |.+.
T Consensus 45 ~~iaIvGsR~~--s~~~~~~a~~l~~~l~~~g~~IVSG~A~-GiD~~ah~~al~~~g~tIaVl~~gld~~yp~~n~~l~~ 121 (220)
T TIGR00732 45 RKVAIVGTRRP--TKYGERWTRKLAEELAKNGVTIVSGLAL-GIDGIAHKAALKVNGRTIAVLGTGLDQIYPRQNSKLAA 121 (220)
T ss_pred CeEEEEcCCCC--CHHHHHHHHHHHHHHHhCCCEEEcCchh-hHHHHHHHHHHHcCCCEEEEECCCCccCCchhhHHHHH
Confidence 67999998765 5677888999999999999999999998 99999999999999999999987652 2210
Q ss_pred --CCCC---CceE-----eecCCHHHHHHHHHHhCCeEEEecCC--cccHHHHHHHHHHHHhccCCCcEEEEcCCCCchh
Q 039983 84 --TGVT---LGEV-----KPVDHMHQRKAEMARNADCFIALPGG--FGTLEELFEVTTWSQLGIHNKPVGLINVEGYYDP 151 (220)
Q Consensus 84 --~~~~---~~~~-----~~~~~~~~Rk~~~~~~sda~IvlpGG--~GTL~El~~~~t~~qlg~~~kPIill~~~g~~~~ 151 (220)
..+. +++. .....|..||+++...||++|++..+ .||+..+-.++. .+|||+.+.. ..+++
T Consensus 122 ~i~~~gglliSe~p~~~~~~~~~f~~RNriia~ls~~vivve~~~~sGtl~ta~~A~~------~gr~v~~~pg-~~~~~ 194 (220)
T TIGR00732 122 KIAENGGLLLSEYPPDTKPIKYNFPKRNRIISGLSRAVLVVEAPLKSGALITARYALE------QGREVFAYPG-DLNSP 194 (220)
T ss_pred HHHHcCCEEEEecCCCCCCCcccHHHHHHHHHHhcCEEEEEECCCCCchHHHHHHHHH------hCCcEEEEcC-CCCCc
Confidence 0011 1111 12356789999999999999999886 799998887775 4899999953 34444
Q ss_pred HHHHHHHHHHcCCCCccccCcEEEcCCHHHHHHH
Q 039983 152 ILNFIDKSIDEGFIYPSQRSIIVSASNAKELVQK 185 (220)
Q Consensus 152 l~~~l~~~~~~g~i~~~~~~~i~~~~d~ee~~~~ 185 (220)
..+--..++++|- ....+++++++.
T Consensus 195 ~~~G~~~Li~~GA---------~~i~~~~d~~~~ 219 (220)
T TIGR00732 195 ESDGCHKLIEQGA---------ALITSAKDILET 219 (220)
T ss_pred cchHHHHHHHCCC---------EEECCHHHHHHh
Confidence 4343345555552 345677877664
No 6
>PF02481 DNA_processg_A: DNA recombination-mediator protein A; InterPro: IPR003488 The SMF family, of DNA processing chain A, dprA, are a group of bacterial proteins. In Helicobacter pylori, dprA is required for natural chromosomal and plasmid transformation []. It has now been shown that DprA is found to bind cooperatively to single-stranded DNA (ssDNA) and to interact with RecA. In the process, DprA-RecA-ssDNA filaments are produced and these filaments catalyse the homology-dependent formation of joint molecules. While the Escherichia coli SSB protein limits access of RecA to ssDNA, DprA alleviates this barrier. It is proposed that DprA is a new member of the recombination-mediator protein family, dedicated to natural bacterial transformation [].; GO: 0009294 DNA mediated transformation; PDB: 3MAJ_A.
Probab=99.32 E-value=3.9e-11 Score=102.34 Aligned_cols=143 Identities=20% Similarity=0.165 Sum_probs=88.0
Q ss_pred CceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEcCCCcChhHHHHHHHHhcCCcEEEEeCCccc---cccc----
Q 039983 11 FKRVCVFCGSSPDYKYCYRKAAVDLGNELVSRGLDLVYGGGSVGLMGLISEEVHRGGRHVLGIIPKALM---KKEL---- 83 (220)
Q Consensus 11 ~~~I~Vfgss~~~~~~~~~~~A~~lG~~lA~~g~~lVtGGg~~GlM~ava~gA~~~gG~viGv~P~~~~---~~e~---- 83 (220)
.+.|+|.|+.++ ++...+.++++++.|+++|+++|+|+.. |+..++.++|+++||.+|+|+|..+. |.+.
T Consensus 44 ~~~iaIvGsR~~--s~~g~~~a~~l~~~l~~~g~~vvSGlA~-GiD~~ah~~al~~~g~tIaVl~~gl~~~yP~~n~~l~ 120 (212)
T PF02481_consen 44 QPSIAIVGSRNP--SEYGLKFAKKLARELAKAGIVVVSGLAK-GIDAAAHRGALDAGGPTIAVLACGLDNIYPKENRELA 120 (212)
T ss_dssp S-EEEEE--SS----HHHHHHHHHHHHHHHHHT-EEEE---T-THHHHHHHHHTTT---EEEE-SS-TTS-SSGGGHHHH
T ss_pred CceEEEEcCCCC--CHHHHHHHHHHHHHHhhCCEEEEcCCCC-CHHHHHHHHHHHccCCEEEEECCCcccccchhhHHHH
Confidence 568999998775 6788899999999999999999999998 99999999999999999999987652 3221
Q ss_pred ---C-CCCC--c-----eEeecCCHHHHHHHHHHhCCeEEEec--CCcccHHHHHHHHHHHHhccCCCcEEEEcCCCCch
Q 039983 84 ---T-GVTL--G-----EVKPVDHMHQRKAEMARNADCFIALP--GGFGTLEELFEVTTWSQLGIHNKPVGLINVEGYYD 150 (220)
Q Consensus 84 ---~-~~~~--~-----~~~~~~~~~~Rk~~~~~~sda~Ivlp--GG~GTL~El~~~~t~~qlg~~~kPIill~~~g~~~ 150 (220)
. .+.+ + .-.....|..|++++...||++||+- =..||+.-+-.++. .+|||+.+.. ..++
T Consensus 121 ~~i~~~~glliSe~~p~~~~~~~~f~~RNRiiaaLs~~~vvvea~~~sGt~~ta~~A~~------~gr~v~~vp~-~~~~ 193 (212)
T PF02481_consen 121 ERILDEGGLLISEYPPGTKPSRWRFPERNRIIAALSDAVVVVEAGEKSGTLHTARFALE------QGRPVFAVPG-PIDD 193 (212)
T ss_dssp HHHHHTT-EEEE-S-TT----TTHHHHHHHHHHHH-S-EEE----TT-THHHHHHHHHH------HT--EEE-----TT-
T ss_pred HHHHhcCcEEEeCCCCCCCcccccChHHHHHHHHhCCeEEEEecCCCChHHHHHHHHHH------cCCeEEEEeC-CCCC
Confidence 0 1110 1 11234577899999999999999984 56789887777775 3899999843 4566
Q ss_pred hHHHHHHHHHHcC
Q 039983 151 PILNFIDKSIDEG 163 (220)
Q Consensus 151 ~l~~~l~~~~~~g 163 (220)
+..+.-..++++|
T Consensus 194 ~~~~G~~~Li~~G 206 (212)
T PF02481_consen 194 PNSEGNNELIKEG 206 (212)
T ss_dssp GGGHHHHHHHHTT
T ss_pred cccHHHHHHHHcC
Confidence 5555555566665
No 7
>PRK10736 hypothetical protein; Provisional
Probab=99.20 E-value=9e-10 Score=101.08 Aligned_cols=159 Identities=12% Similarity=0.128 Sum_probs=116.7
Q ss_pred CceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEcCCCcChhHHHHHHHHhcCCcEEEEeCCccc---ccc-----
Q 039983 11 FKRVCVFCGSSPDYKYCYRKAAVDLGNELVSRGLDLVYGGGSVGLMGLISEEVHRGGRHVLGIIPKALM---KKE----- 82 (220)
Q Consensus 11 ~~~I~Vfgss~~~~~~~~~~~A~~lG~~lA~~g~~lVtGGg~~GlM~ava~gA~~~gG~viGv~P~~~~---~~e----- 82 (220)
.+.|+|.|+.++ ++...+.++.+++.|+++|++||+|+.. |+..++.++|+++||.+|+|++..+. |.+
T Consensus 107 ~~~iaiVGsR~~--s~yg~~~~~~l~~~la~~g~~IVSGlA~-GiD~~AH~~aL~~~g~TIaVlg~Gld~~YP~~n~~L~ 183 (374)
T PRK10736 107 SPQLAVVGSRAH--SWYGERWGRLFCEELAKNGLTITSGLAR-GIDGVAHRAALQAGGKTIAVLGNGLENIYPRRHARLA 183 (374)
T ss_pred CCeEEEECCCCC--CHHHHHHHHHHHHHHHHCCCEEECcchh-hHHHHHHHHHHHcCCCEEEEECCCCCccCCHhHHHHH
Confidence 357999998775 5777888999999999999999999998 99999999999999999999876542 322
Q ss_pred --c-CCCCC--ceE-----eecCCHHHHHHHHHHhCCeEEEec--CCcccHHHHHHHHHHHHhccCCCcEEEEcCCCCch
Q 039983 83 --L-TGVTL--GEV-----KPVDHMHQRKAEMARNADCFIALP--GGFGTLEELFEVTTWSQLGIHNKPVGLINVEGYYD 150 (220)
Q Consensus 83 --~-~~~~~--~~~-----~~~~~~~~Rk~~~~~~sda~Ivlp--GG~GTL~El~~~~t~~qlg~~~kPIill~~~g~~~ 150 (220)
. ..+.+ +|. ....+|..||+++...|+++||+- =..|||.=.-.++. .+|+|+.+.. ..++
T Consensus 184 ~~I~~~~G~liSEyp~~~~p~~~~Fp~RNRIIagLS~~viVvEA~~kSGsliTA~~Al~------~gR~VfavPG-~i~~ 256 (374)
T PRK10736 184 ESIIEQGGALVSEFPLDTPPLAANFPRRNRIISGLSKGVLVVEAALRSGSLVTARCALE------QGRDVFALPG-PIGN 256 (374)
T ss_pred HHHHhcCCEEEECCCCCCCCChhhhhHhhhHHHHhCCeEEEEEeCCCCchHHHHHHHHH------hCCeEEEEcC-CCCC
Confidence 1 01110 111 124688999999999999999984 46678765555554 5899999842 3444
Q ss_pred hHHHHHHHHHHcCCCCccccCcEEEcCCHHHHHHHHHh
Q 039983 151 PILNFIDKSIDEGFIYPSQRSIIVSASNAKELVQKLED 188 (220)
Q Consensus 151 ~l~~~l~~~~~~g~i~~~~~~~i~~~~d~ee~~~~l~~ 188 (220)
+.-.--..++.+| -..+.+++++++.+..
T Consensus 257 ~~s~G~n~LI~~G---------A~lv~~~~Di~~~l~~ 285 (374)
T PRK10736 257 PGSEGPHWLIKQG---------AYLVTSPEDILENLQF 285 (374)
T ss_pred ccchhHHHHHHCC---------CEEeCCHHHHHHHhhh
Confidence 4434334455554 3457789999998853
No 8
>COG0758 Smf Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake [DNA replication, recombination, and repair / Intracellular trafficking and secretion]
Probab=98.89 E-value=6.7e-08 Score=88.07 Aligned_cols=125 Identities=15% Similarity=0.169 Sum_probs=96.2
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEcCCCcChhHHHHHHHHhcCCcEEEEeCCcc---ccccc-----
Q 039983 12 KRVCVFCGSSPDYKYCYRKAAVDLGNELVSRGLDLVYGGGSVGLMGLISEEVHRGGRHVLGIIPKAL---MKKEL----- 83 (220)
Q Consensus 12 ~~I~Vfgss~~~~~~~~~~~A~~lG~~lA~~g~~lVtGGg~~GlM~ava~gA~~~gG~viGv~P~~~---~~~e~----- 83 (220)
+.|+|.|+.+. +....+.++.|++.|+++|+++|+|+.. |+..+++++|++++|++|+|+...+ +|++.
T Consensus 112 ~~vaIVGsR~~--S~~g~~~~~~~a~~L~~~g~~IvSGlA~-GID~~AH~aaL~~~G~TiaVl~~Gld~iYP~~n~~l~~ 188 (350)
T COG0758 112 PSVAIVGSRKP--SKYGLDYTRDLAEYLAQNGITIVSGLAR-GIDTEAHKAALNAGGKTIAVLATGLDKIYPRENIKLAE 188 (350)
T ss_pred CceEEEeCCCC--CHhHHHHHHHHHHHHHhCCeEEEecCcc-eecHHHHHHHHHcCCcEEEEEcCCCCccCChhhHHHHH
Confidence 67999998776 5777889999999999999999999999 9999999999999999999987654 23221
Q ss_pred --CCCC--Cce-----EeecCCHHHHHHHHHHhCCeEEEecC--CcccHHHHHHHHHHHHhccCCCcEEEEcC
Q 039983 84 --TGVT--LGE-----VKPVDHMHQRKAEMARNADCFIALPG--GFGTLEELFEVTTWSQLGIHNKPVGLINV 145 (220)
Q Consensus 84 --~~~~--~~~-----~~~~~~~~~Rk~~~~~~sda~IvlpG--G~GTL~El~~~~t~~qlg~~~kPIill~~ 145 (220)
..+. ++| -....+|..||+++..+|+++||+-. -.|+|.=.-.++. .++.|+.+.+
T Consensus 189 ~i~~~g~liSEypp~~~p~~~~Fp~RNRiIagLS~gvlVvEA~~kSGSLiTA~~Ale------qgR~VfavPg 255 (350)
T COG0758 189 KIAENGLLISEYPPDTEPNKGNFPRRNRLIAGLSDGVLVVEAGLKSGSLITAKYALE------QGRDVFAVPG 255 (350)
T ss_pred HHHhcCeEEeecCCCCCcccccchHHHHHHHHhcCceEEEecCcccccHHHHHHHHH------cCCeeEEcCC
Confidence 0111 011 12346889999999999999999854 4688755544444 4788887754
No 9
>PF12694 MoCo_carrier: Putative molybdenum carrier; InterPro: IPR024755 The structure of proteins in this family contain central beta strands with flanking alpha helices. The structure is similar to that of a molybdenum cofactor carrier protein.; PDB: 3IMK_A.
Probab=96.64 E-value=0.018 Score=46.50 Aligned_cols=93 Identities=22% Similarity=0.238 Sum_probs=52.3
Q ss_pred EEEcCCCcChhHHHHHHHHhcCCcEEEEeCCccccccc-CCCCCc-eEeecCCHHHHHHHHHHhCCeEEEec-CCc--cc
Q 039983 46 LVYGGGSVGLMGLISEEVHRGGRHVLGIIPKALMKKEL-TGVTLG-EVKPVDHMHQRKAEMARNADCFIALP-GGF--GT 120 (220)
Q Consensus 46 lVtGGg~~GlM~ava~gA~~~gG~viGv~P~~~~~~e~-~~~~~~-~~~~~~~~~~Rk~~~~~~sda~Ivlp-GG~--GT 120 (220)
||+||-. |+..|+-+.|+++|-..=|-.|......+- -+..|. ......+...|.+..++-||+-++|- |-. ||
T Consensus 1 IiSGGQT-GvDRAALDaAi~~gi~~GGWcP~GR~aEDG~ip~~Y~L~E~~~~~Y~~RT~~NV~DsDgTlI~~~g~l~GGt 79 (145)
T PF12694_consen 1 IISGGQT-GVDRAALDAAIAHGIPHGGWCPKGRRAEDGPIPARYPLQETPSSGYRQRTEWNVRDSDGTLIFTRGELTGGT 79 (145)
T ss_dssp EE----T-THHHHHHHHHHHTT--EE-EE-GGG--TTSS--TTS--EE-SS--HHHHHHHHHHTSSEEEEEESSS--HHH
T ss_pred CccCccc-cHHHHHHHHHHHcCCCccCcCCCCcccccCcCCccccceecCCCCHHHHHHhhhhhcCeEEEEecCCCCcHH
Confidence 6787766 999999999999998888888876543321 122231 11234778999999999999977764 321 44
Q ss_pred HHHHHHHHHHHHhccCCCcEEEEcC
Q 039983 121 LEELFEVTTWSQLGIHNKPVGLINV 145 (220)
Q Consensus 121 L~El~~~~t~~qlg~~~kPIill~~ 145 (220)
. +|...-.++.||+.+++.
T Consensus 80 ~------lT~~~a~~~~KP~l~i~~ 98 (145)
T PF12694_consen 80 A------LTVEFARKHGKPCLHIDL 98 (145)
T ss_dssp H------HHHHHHHHTT--EEEETS
T ss_pred H------HHHHHHHHhCCCEEEEec
Confidence 2 343333468999999854
No 10
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=95.15 E-value=0.046 Score=41.50 Aligned_cols=46 Identities=33% Similarity=0.308 Sum_probs=38.1
Q ss_pred CCHHHHHHHHHHhCCeEEEecCC----cccHHHHHHHHHHHHhccCCCcEEEEcCC
Q 039983 95 DHMHQRKAEMARNADCFIALPGG----FGTLEELFEVTTWSQLGIHNKPVGLINVE 146 (220)
Q Consensus 95 ~~~~~Rk~~~~~~sda~IvlpGG----~GTL~El~~~~t~~qlg~~~kPIill~~~ 146 (220)
....+|....++.||++|+.-.+ .||.-|+..++.+ +|||+++..+
T Consensus 49 ~~i~~~d~~~i~~~D~via~l~~~~~d~Gt~~ElG~A~al------gkpv~~~~~d 98 (113)
T PF05014_consen 49 REIFERDLEGIRECDIVIANLDGFRPDSGTAFELGYAYAL------GKPVILLTED 98 (113)
T ss_dssp HHHHHHHHHHHHHSSEEEEEECSSS--HHHHHHHHHHHHT------TSEEEEEECC
T ss_pred HHHHHHHHHHHHHCCEEEEECCCCCCCCcHHHHHHHHHHC------CCEEEEEEcC
Confidence 44578889999999988877555 9999999999874 8999999653
No 11
>PF06908 DUF1273: Protein of unknown function (DUF1273); InterPro: IPR024718 This entry represents a functionally uncharacterised domain.; PDB: 2NX2_A.
Probab=94.61 E-value=0.75 Score=38.26 Aligned_cols=130 Identities=19% Similarity=0.210 Sum_probs=61.3
Q ss_pred CceEEEEcCCCC------CCCHHHHHHHHHHHH---HHHHCCCe-EEEcCCCcChhHHHHHHHHhcCC-----cEEEEeC
Q 039983 11 FKRVCVFCGSSP------DYKYCYRKAAVDLGN---ELVSRGLD-LVYGGGSVGLMGLISEEVHRGGR-----HVLGIIP 75 (220)
Q Consensus 11 ~~~I~Vfgss~~------~~~~~~~~~A~~lG~---~lA~~g~~-lVtGGg~~GlM~ava~gA~~~gG-----~viGv~P 75 (220)
|+++||-|-... ..+|.....-..|-+ .+-+.|++ ++|||.- |+---++..+++... +.+-++|
T Consensus 1 M~~~~~TGyR~~eL~~f~~~~~~~~~ik~~L~~~i~~lie~G~~~fi~Ggal-G~D~waae~vl~LK~~yp~ikL~~v~P 79 (177)
T PF06908_consen 1 MKRCCFTGYRPYELGIFNEKDPKIQVIKKALKKQIIELIEEGVRWFITGGAL-GVDLWAAEVVLELKKEYPEIKLALVLP 79 (177)
T ss_dssp --EEEEEE--GGGGT--SS--HHHHHHHHHHHHHHHHHHTTT--EEEE---T-THHHHHHHHHHTTTTT-TT-EEEEEES
T ss_pred CeEEEEEecChhhcCCCCCCchhHHHHHHHHHHHHHHHHHCCCCEEEECCcc-cHHHHHHHHHHHHHhhhhheEEEEEEc
Confidence 456777664332 135555444444444 33456887 4566665 999999999998643 4556667
Q ss_pred CcccccccCCC----------CCceEeec--------CCHHHHHHHHHHhCCeEEEe-----cCCcccHHHHHHHHHHHH
Q 039983 76 KALMKKELTGV----------TLGEVKPV--------DHMHQRKAEMARNADCFIAL-----PGGFGTLEELFEVTTWSQ 132 (220)
Q Consensus 76 ~~~~~~e~~~~----------~~~~~~~~--------~~~~~Rk~~~~~~sda~Ivl-----pGG~GTL~El~~~~t~~q 132 (220)
-......+... ..+..+.+ .-|..|++.|+++||.+|++ +||....-+.....
T Consensus 80 f~~q~~~W~~~~q~~y~~il~~aD~v~~vs~~~Y~~~~~~~~rn~fMvdhsd~~iavyD~~~~G~t~~~~~~a~~~---- 155 (177)
T PF06908_consen 80 FENQGNNWNEANQERYQSILEQADFVVVVSERPYYSPGQLQKRNRFMVDHSDGLIAVYDGEPEGGTKYTVRAAKKY---- 155 (177)
T ss_dssp SB-TTTTS-HHHHHHHHHHHHH-SEEEESSSSB---HHHHHHHHHHHHHHSSEEEEE--TTT--TTHHHHHHHHHH----
T ss_pred ccchhhcCCHHHHHHHHHHHHhCCEEEEccCCCCCCHHHHHHHhHHHHhCCCeEEEEEeCCCCCcchHHHHHHHHH----
Confidence 43222111100 01222222 23579999999999988887 23333322222111
Q ss_pred hccCCCcEEEEcC
Q 039983 133 LGIHNKPVGLINV 145 (220)
Q Consensus 133 lg~~~kPIill~~ 145 (220)
-..++.||.++..
T Consensus 156 ~~~~~y~i~~I~~ 168 (177)
T PF06908_consen 156 QEQKGYPIDLIDP 168 (177)
T ss_dssp HHHH---EEEE-H
T ss_pred hhccCCeEEEecH
Confidence 1124679988863
No 12
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=94.48 E-value=1.5 Score=38.22 Aligned_cols=119 Identities=25% Similarity=0.244 Sum_probs=65.8
Q ss_pred CCCeEEEcCCCcChhHHHHHHHHhcCC-cEEEEeCCcccccccCCCCCceEeecCCHH-HHHHHHHHhCCeEEEecCCcc
Q 039983 42 RGLDLVYGGGSVGLMGLISEEVHRGGR-HVLGIIPKALMKKELTGVTLGEVKPVDHMH-QRKAEMARNADCFIALPGGFG 119 (220)
Q Consensus 42 ~g~~lVtGGg~~GlM~ava~gA~~~gG-~viGv~P~~~~~~e~~~~~~~~~~~~~~~~-~Rk~~~~~~sda~IvlpGG~G 119 (220)
.++.|||=||. |.- .+.+.+.+..+ .++-+-+.. .. ..... +. ...+. ..-.-++..||++|-- ||++
T Consensus 192 ~~~iLv~~gg~-~~~-~~~~~l~~~~~~~~~v~g~~~--~~-~~~~n---i~-~~~~~~~~~~~~m~~ad~vIs~-~G~~ 261 (318)
T PF13528_consen 192 EPKILVYFGGG-GPG-DLIEALKALPDYQFIVFGPNA--AD-PRPGN---IH-VRPFSTPDFAELMAAADLVISK-GGYT 261 (318)
T ss_pred CCEEEEEeCCC-cHH-HHHHHHHhCCCCeEEEEcCCc--cc-ccCCC---EE-EeecChHHHHHHHHhCCEEEEC-CCHH
Confidence 46778876665 555 55555555554 333332221 11 11111 11 11221 2233456788888776 7899
Q ss_pred cHHHHHHHHHHHHhccCCCcEEEEcCCCCchhHHHHHHHHHHcCCCCccccCcEEEcC----CHHHHHHHHHh
Q 039983 120 TLEELFEVTTWSQLGIHNKPVGLINVEGYYDPILNFIDKSIDEGFIYPSQRSIIVSAS----NAKELVQKLED 188 (220)
Q Consensus 120 TL~El~~~~t~~qlg~~~kPIill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~----d~ee~~~~l~~ 188 (220)
|+.|+ +. .+||++++-..++++...+- +.+.+.|.. ...+ +++.+-+.|++
T Consensus 262 t~~Ea---~~------~g~P~l~ip~~~~~EQ~~~a-~~l~~~G~~--------~~~~~~~~~~~~l~~~l~~ 316 (318)
T PF13528_consen 262 TISEA---LA------LGKPALVIPRPGQDEQEYNA-RKLEELGLG--------IVLSQEDLTPERLAEFLER 316 (318)
T ss_pred HHHHH---HH------cCCCEEEEeCCCCchHHHHH-HHHHHCCCe--------EEcccccCCHHHHHHHHhc
Confidence 98776 33 48999999766666665432 344444442 2222 67777777765
No 13
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=94.11 E-value=0.63 Score=37.06 Aligned_cols=74 Identities=16% Similarity=0.259 Sum_probs=48.1
Q ss_pred HHHHHHHHHhCCeEEEecCC-cccHHHHHHHHHHHHhccCCCcEEEEcCCCCchhHHHHHHHHHHcCCCCccccCcEEEc
Q 039983 98 HQRKAEMARNADCFIALPGG-FGTLEELFEVTTWSQLGIHNKPVGLINVEGYYDPILNFIDKSIDEGFIYPSQRSIIVSA 176 (220)
Q Consensus 98 ~~Rk~~~~~~sda~IvlpGG-~GTL~El~~~~t~~qlg~~~kPIill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~ 176 (220)
..|.+.+++.||.+|+.-|- +=--+-.|.+-... ..+||+|++.....--+|.+. +.....++
T Consensus 63 ~iRT~~li~~aDvVVvrFGekYKQWNaAfDAg~a~---AlgKplI~lh~~~~~HpLKEv-------------da~A~a~~ 126 (141)
T PF11071_consen 63 AIRTRTLIEKADVVVVRFGEKYKQWNAAFDAGYAA---ALGKPLITLHPEELHHPLKEV-------------DAAALAVA 126 (141)
T ss_pred HHHHHHHHhhCCEEEEEechHHHHHHHHhhHHHHH---HcCCCeEEecchhccccHHHH-------------hHhhHhhh
Confidence 57889999999999998772 11112222221111 148999999876555555443 23445678
Q ss_pred CCHHHHHHHHH
Q 039983 177 SNAKELVQKLE 187 (220)
Q Consensus 177 ~d~ee~~~~l~ 187 (220)
.+|+.+++.|.
T Consensus 127 et~~Qvv~iL~ 137 (141)
T PF11071_consen 127 ETPEQVVEILR 137 (141)
T ss_pred CCHHHHHHHHH
Confidence 99999999886
No 14
>KOG3614 consensus Ca2+/Mg2+-permeable cation channels (LTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=93.73 E-value=1.5 Score=46.45 Aligned_cols=152 Identities=18% Similarity=0.198 Sum_probs=89.5
Q ss_pred eEEEEcCCCC-CCCHHHHHHHHH-HHHHHHHCCCeEEEcCCCcChhHHHHHHHHhcC-----CcE--EEEeCCccccc--
Q 039983 13 RVCVFCGSSP-DYKYCYRKAAVD-LGNELVSRGLDLVYGGGSVGLMGLISEEVHRGG-----RHV--LGIIPKALMKK-- 81 (220)
Q Consensus 13 ~I~Vfgss~~-~~~~~~~~~A~~-lG~~lA~~g~~lVtGGg~~GlM~ava~gA~~~g-----G~v--iGv~P~~~~~~-- 81 (220)
.|+|.||... .-.|.+.+.-++ |-+..-..|.=|+|||-.+|+|.-|..++++++ +++ |||-|-....+
T Consensus 120 vISV~GG~~nF~L~pkl~~~frkGLvkaAqtTGAWIiTsG~~tGv~khVg~Al~dh~~~s~~~~ivaiGiApWGvv~nr~ 199 (1381)
T KOG3614|consen 120 VISVHGGLQNFELQPKLKSVFRKGLIKAAQTTGAWIITSGLDTGVMKHVGSALRDHSLASSGGKIVAIGIAPWGIVKNRD 199 (1381)
T ss_pred EEEEecCCCCccccHHHHHHHHHHHHHHHhhcCeEEEecCcccchHHHHHHHHHhccchhccCceEEEeeccceeeechh
Confidence 6999998664 234565544444 444434468889999999999999999999964 243 55544222110
Q ss_pred --------------ccC-------CCCCceEeecCC---------HHHHHHHHHHh------C----C---eEEEecCCc
Q 039983 82 --------------ELT-------GVTLGEVKPVDH---------MHQRKAEMARN------A----D---CFIALPGGF 118 (220)
Q Consensus 82 --------------e~~-------~~~~~~~~~~~~---------~~~Rk~~~~~~------s----d---a~IvlpGG~ 118 (220)
+.+ ++..+..+.+++ ..-|+++=--. + + ..+++.||.
T Consensus 200 ~lI~~d~~~~Y~~~~~~~~~L~~Ln~nhShFiLvDnGTvGkygae~~lR~~LEk~Is~q~~~~~~~~~iPvvc~v~eGg~ 279 (1381)
T KOG3614|consen 200 DLIGGDFTVSYQTDDNPLNKLTILNNNHSHFILVDNGTVGKYGAETKLRLRLEKYISLQKINSGGTGKIPVVCLVLEGGP 279 (1381)
T ss_pred hhccCCcceeeeecCCCCcceeeccCCCceeEEecCCccCccchHHHHHHhchhhHhhhccCCCCCCccceEEEEecCCc
Confidence 000 011122222211 12233221100 1 2 467889999
Q ss_pred ccHHHHHHHHHHHHhccCCCcEEEEcCCCCchhHHHHHH-HHHHcCCCCcc
Q 039983 119 GTLEELFEVTTWSQLGIHNKPVGLINVEGYYDPILNFID-KSIDEGFIYPS 168 (220)
Q Consensus 119 GTL~El~~~~t~~qlg~~~kPIill~~~g~~~~l~~~l~-~~~~~g~i~~~ 168 (220)
+|+.=+.+..+. ..+.|++++.+.|--.++++++- .....|+++..
T Consensus 280 nti~~I~~~v~~----~~~iPvvVc~GSGraADilA~~~~~~~~~g~l~~~ 326 (1381)
T KOG3614|consen 280 NTLAIILDYVTD----KPPIPVVVCAGSGRAADILAFAHEEHGAPGILSDA 326 (1381)
T ss_pred hHHHHHHHHhcc----CCCCceEEEcCCchHHHHHHHHHHhhcCCCcccHH
Confidence 999877666542 33569999988887788888774 44455665543
No 15
>PRK13660 hypothetical protein; Provisional
Probab=93.47 E-value=4 Score=34.17 Aligned_cols=108 Identities=17% Similarity=0.075 Sum_probs=58.6
Q ss_pred HHHHHHHHHCCCe-EEEcCCCcChhHHHHHHHHhcC-----CcEEEEeCCcccccccCC----------CCCceEee---
Q 039983 33 VDLGNELVSRGLD-LVYGGGSVGLMGLISEEVHRGG-----RHVLGIIPKALMKKELTG----------VTLGEVKP--- 93 (220)
Q Consensus 33 ~~lG~~lA~~g~~-lVtGGg~~GlM~ava~gA~~~g-----G~viGv~P~~~~~~e~~~----------~~~~~~~~--- 93 (220)
++|-+.+ +.|+. +++||- .|+---++.-|++.. -+.+-++|-......+.. ...+.+..
T Consensus 33 ~~l~~~~-e~G~~wfi~gga-lG~d~wAaEvvl~LK~~yp~lkL~~~~PF~~q~~~W~e~~q~~y~~i~~~aD~v~~vs~ 110 (182)
T PRK13660 33 RKLIALL-EEGLEWVIISGQ-LGVELWAAEVVLELKEEYPDLKLAVITPFEEHGENWNEANQEKLANILKQADFVKSISK 110 (182)
T ss_pred HHHHHHH-HCCCCEEEECCc-chHHHHHHHHHHHHHhhCCCeEEEEEeCccchhhcCCHHHHHHHHHHHHhCCEEEEecC
Confidence 3444444 45777 456665 599999999998863 345666674322111110 00111211
Q ss_pred -----cCCHHHHHHHHHHhCCeEEEec-CC--cccHHHHHHHHHHHHhccCCCcEEEEc
Q 039983 94 -----VDHMHQRKAEMARNADCFIALP-GG--FGTLEELFEVTTWSQLGIHNKPVGLIN 144 (220)
Q Consensus 94 -----~~~~~~Rk~~~~~~sda~Ivlp-GG--~GTL~El~~~~t~~qlg~~~kPIill~ 144 (220)
..-|..|++.|+++||.+|++= |- .||--=+- .+..+-..++.||.++.
T Consensus 111 ~~y~~p~q~~~rn~fmv~~sd~~i~~YD~e~~Ggt~y~~~--~A~k~~~~~~y~i~~I~ 167 (182)
T PRK13660 111 RPYESPAQFRQYNQFMLEHTDGALLVYDEENEGSPKYFYE--AAKKKQEKEDYPLDLIT 167 (182)
T ss_pred CCCCChHHHHHHHHHHHHccCeEEEEEcCCCCCChHHHHH--HHHHhhhccCceEEEeC
Confidence 1237899999999999888762 11 23431111 11112223578998884
No 16
>PRK10565 putative carbohydrate kinase; Provisional
Probab=93.29 E-value=0.4 Score=46.11 Aligned_cols=127 Identities=22% Similarity=0.203 Sum_probs=68.2
Q ss_pred CCCeEEEcCCCcChhHHH---HHHHHhcC-CcEEEEeCCcccccccCCCCCceEeecCCHHHHHHHHHHhCCeEEEecCC
Q 039983 42 RGLDLVYGGGSVGLMGLI---SEEVHRGG-RHVLGIIPKALMKKELTGVTLGEVKPVDHMHQRKAEMARNADCFIALPGG 117 (220)
Q Consensus 42 ~g~~lVtGGg~~GlM~av---a~gA~~~g-G~viGv~P~~~~~~e~~~~~~~~~~~~~~~~~Rk~~~~~~sda~IvlpGG 117 (220)
+|+.+|-||.. +.++|+ +++|+..| |.|.=+.|....+ .......++++.....+.-.-++..+|++++=||
T Consensus 254 ~G~vliigGs~-~~~GA~~Laa~aAlr~GaGlv~~~~~~~~~~--~~~~~~Pe~~~~~~~~~~~~~~~~~~~a~viGpG- 329 (508)
T PRK10565 254 HGRLLIIGGDH-GTAGAIRMAGEAALRSGAGLVRVLTRSENIA--PLLTARPELMVHELTPDSLEESLEWADVVVIGPG- 329 (508)
T ss_pred CCeEEEEECCC-CCccHHHHHHHHHHHhCCCeEEEEeChhhHH--HHhhcCceeEEecCCHhHHHHHhhcCCEEEEeCC-
Confidence 58889999976 666664 66777776 6666556643211 1111223443322111112233467899888776
Q ss_pred cccHHHHHHHHHHHHhccCCCcEEEEcCCCCchhHHHHHHHHHHcCCCCccccCcEEEcCCHHHHHHHHH
Q 039983 118 FGTLEELFEVTTWSQLGIHNKPVGLINVEGYYDPILNFIDKSIDEGFIYPSQRSIIVSASNAKELVQKLE 187 (220)
Q Consensus 118 ~GTL~El~~~~t~~qlg~~~kPIill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~d~ee~~~~l~ 187 (220)
.|+-++...++. .+...++|+ +++.++ +.+|.. ... . ....+++.++-|+...+.
T Consensus 330 lg~~~~~~~~~~--~~~~~~~P~-VLDAda-----L~ll~~---~~~-~---~~~~VLTPh~gE~~rL~~ 384 (508)
T PRK10565 330 LGQQEWGKKALQ--KVENFRKPM-LWDADA-----LNLLAI---NPD-K---RHNRVITPHPGEAARLLG 384 (508)
T ss_pred CCCCHHHHHHHH--HHHhcCCCE-EEEchH-----HHHHhh---Ccc-c---cCCeEECCCHHHHHHHhC
Confidence 777655544332 222356897 557666 233321 100 0 113567777777776664
No 17
>TIGR03646 YtoQ_fam YtoQ family protein. Members of this family are uncharacterized proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=92.15 E-value=1.6 Score=34.94 Aligned_cols=74 Identities=18% Similarity=0.304 Sum_probs=47.5
Q ss_pred HHHHHHHHHhCCeEEEecCC-cccHHHHHHHHHHHHhccCCCcEEEEcCCCCchhHHHHHHHHHHcCCCCccccCcEEEc
Q 039983 98 HQRKAEMARNADCFIALPGG-FGTLEELFEVTTWSQLGIHNKPVGLINVEGYYDPILNFIDKSIDEGFIYPSQRSIIVSA 176 (220)
Q Consensus 98 ~~Rk~~~~~~sda~IvlpGG-~GTL~El~~~~t~~qlg~~~kPIill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~ 176 (220)
..|-+.+++.||.+|+.-|- +=--+-.|.+-... ..+||+|++..+..--+|.+. +.....++
T Consensus 66 aiRT~~li~~aDvvVvrFGekYKQWNaAfDAg~aa---AlgKplI~lh~~~~~HpLKEv-------------daaA~ava 129 (144)
T TIGR03646 66 NIRTRKLIEKADVVIALFGEKYKQWNAAFDAGYAA---ALGKPLIILRPEELIHPLKEV-------------DNKAQAVV 129 (144)
T ss_pred hHHHHHHHhhCCEEEEEechHHHHHHHHhhHHHHH---HcCCCeEEecchhccccHHHH-------------hHHHHHHh
Confidence 57888999999999998762 22222222221110 148999999876554455442 23445678
Q ss_pred CCHHHHHHHHH
Q 039983 177 SNAKELVQKLE 187 (220)
Q Consensus 177 ~d~ee~~~~l~ 187 (220)
.+|+.+++.|.
T Consensus 130 etp~Qvv~iL~ 140 (144)
T TIGR03646 130 ETPEQAIETLK 140 (144)
T ss_pred cCHHHHHHHHH
Confidence 99999999886
No 18
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=91.77 E-value=2.4 Score=29.95 Aligned_cols=63 Identities=17% Similarity=0.110 Sum_probs=44.2
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHHC-CCeEEEcCCCcChhHHHHHHHHhcCCcEEEEeCCc
Q 039983 12 KRVCVFCGSSPDYKYCYRKAAVDLGNELVSR-GLDLVYGGGSVGLMGLISEEVHRGGRHVLGIIPKA 77 (220)
Q Consensus 12 ~~I~Vfgss~~~~~~~~~~~A~~lG~~lA~~-g~~lVtGGg~~GlM~ava~gA~~~gG~viGv~P~~ 77 (220)
++|.|-||... .|- ...-..|-+.+++. ...||+||.+.|+...+.+=|.+.|-.++-+-|++
T Consensus 4 ~rVli~GgR~~-~D~--~~i~~~Ld~~~~~~~~~~lvhGga~~GaD~iA~~wA~~~gv~~~~~~adW 67 (71)
T PF10686_consen 4 MRVLITGGRDW-TDH--ELIWAALDKVHARHPDMVLVHGGAPKGADRIAARWARERGVPVIRFPADW 67 (71)
T ss_pred CEEEEEECCcc-ccH--HHHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHHHCCCeeEEeCcCh
Confidence 45655555443 232 33445677777765 56788999955999999999999988888776654
No 19
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=91.52 E-value=4 Score=37.05 Aligned_cols=72 Identities=22% Similarity=0.298 Sum_probs=42.9
Q ss_pred HHHHHHHhCCeEEEecCCcccHHHHHHHHHHHHhccCCCcEEEEcCCCCchhHHHHHHHHHHcCCCCccccCcEEEcCCH
Q 039983 100 RKAEMARNADCFIALPGGFGTLEELFEVTTWSQLGIHNKPVGLINVEGYYDPILNFIDKSIDEGFIYPSQRSIIVSASNA 179 (220)
Q Consensus 100 Rk~~~~~~sda~IvlpGG~GTL~El~~~~t~~qlg~~~kPIill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~d~ 179 (220)
.-..++..||++|.-+| .+|+.| +++ .++|+|+.+.-. ....-+ .+.+.+.|. -.++.|+
T Consensus 275 ~~~~l~~aaDv~V~~~g-~~ti~E---Ama------~g~PvI~~~~~p-gqe~gn-~~~i~~~g~--------g~~~~~~ 334 (382)
T PLN02605 275 NMEEWMGACDCIITKAG-PGTIAE---ALI------RGLPIILNGYIP-GQEEGN-VPYVVDNGF--------GAFSESP 334 (382)
T ss_pred cHHHHHHhCCEEEECCC-cchHHH---HHH------cCCCEEEecCCC-ccchhh-HHHHHhCCc--------eeecCCH
Confidence 34467789999997565 468655 455 489999987311 111111 122222222 2245899
Q ss_pred HHHHHHHHhhcC
Q 039983 180 KELVQKLEDYVP 191 (220)
Q Consensus 180 ee~~~~l~~~~~ 191 (220)
+++.+.+.+...
T Consensus 335 ~~la~~i~~ll~ 346 (382)
T PLN02605 335 KEIARIVAEWFG 346 (382)
T ss_pred HHHHHHHHHHHc
Confidence 999888887653
No 20
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=91.20 E-value=9.7 Score=33.32 Aligned_cols=73 Identities=18% Similarity=0.125 Sum_probs=39.5
Q ss_pred HHHHhCCeEEEecCCcccHHHHHHHHHHHHhccCCCcEEEEcCCCCchhHHHHHHHHHHcCCCCccccCcEEEcC--CHH
Q 039983 103 EMARNADCFIALPGGFGTLEELFEVTTWSQLGIHNKPVGLINVEGYYDPILNFIDKSIDEGFIYPSQRSIIVSAS--NAK 180 (220)
Q Consensus 103 ~~~~~sda~IvlpGG~GTL~El~~~~t~~qlg~~~kPIill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~--d~e 180 (220)
.++..||++|. ++|..|+-| ++. .++|+|..+..+.-.......+.+.+. ....++-.. +++
T Consensus 246 ~~l~~ad~~v~-~~g~~~l~E---a~~------~g~Pvv~~~~~~~~~~~~~~~~~i~~~------~~G~~~~~~~~~~~ 309 (348)
T TIGR01133 246 AAYAAADLVIS-RAGASTVAE---LAA------AGVPAILIPYPYAADDQYYNAKFLEDL------GAGLVIRQKELLPE 309 (348)
T ss_pred HHHHhCCEEEE-CCChhHHHH---HHH------cCCCEEEeeCCCCccchhhHHHHHHHC------CCEEEEecccCCHH
Confidence 56688999886 444456544 454 589999986433211111000112111 122333333 489
Q ss_pred HHHHHHHhhcC
Q 039983 181 ELVQKLEDYVP 191 (220)
Q Consensus 181 e~~~~l~~~~~ 191 (220)
++.+.|.+...
T Consensus 310 ~l~~~i~~ll~ 320 (348)
T TIGR01133 310 KLLEALLKLLL 320 (348)
T ss_pred HHHHHHHHHHc
Confidence 99988887663
No 21
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=90.98 E-value=5.1 Score=36.63 Aligned_cols=72 Identities=19% Similarity=0.227 Sum_probs=43.2
Q ss_pred HHHHHHHHhCCeEEEecCCcccHHHHHHHHHHHHhccCCCcEEEEcCCCCchhHHHHHHHHHHcCCCCccccCcEEEcCC
Q 039983 99 QRKAEMARNADCFIALPGGFGTLEELFEVTTWSQLGIHNKPVGLINVEGYYDPILNFIDKSIDEGFIYPSQRSIIVSASN 178 (220)
Q Consensus 99 ~Rk~~~~~~sda~IvlpGG~GTL~El~~~~t~~qlg~~~kPIill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~d 178 (220)
.+-..++..||++|.-|||. |+. |++. .++|+++.+...- ++..+- .-+.+.|+ -...+|
T Consensus 265 ~~~~~~~~~aDl~I~k~gg~-tl~---EA~a------~G~PvI~~~~~pg-qe~~N~-~~~~~~G~--------g~~~~~ 324 (391)
T PRK13608 265 KHMNEWMASSQLMITKPGGI-TIS---EGLA------RCIPMIFLNPAPG-QELENA-LYFEEKGF--------GKIADT 324 (391)
T ss_pred chHHHHHHhhhEEEeCCchH-HHH---HHHH------hCCCEEECCCCCC-cchhHH-HHHHhCCc--------EEEeCC
Confidence 44556789999999877764 654 4455 4899999864211 121111 11222332 344678
Q ss_pred HHHHHHHHHhhc
Q 039983 179 AKELVQKLEDYV 190 (220)
Q Consensus 179 ~ee~~~~l~~~~ 190 (220)
++++.+.|.+..
T Consensus 325 ~~~l~~~i~~ll 336 (391)
T PRK13608 325 PEEAIKIVASLT 336 (391)
T ss_pred HHHHHHHHHHHh
Confidence 888888777664
No 22
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=90.65 E-value=11 Score=33.00 Aligned_cols=77 Identities=18% Similarity=0.194 Sum_probs=41.1
Q ss_pred HHHHHHHHhCCeEEEecCCcccHHHHHHHHHHHHhccCCCcEEEEcCCCC-chhHHHHHHHHHHcCCCCccccCcEEEcC
Q 039983 99 QRKAEMARNADCFIALPGGFGTLEELFEVTTWSQLGIHNKPVGLINVEGY-YDPILNFIDKSIDEGFIYPSQRSIIVSAS 177 (220)
Q Consensus 99 ~Rk~~~~~~sda~IvlpGG~GTL~El~~~~t~~qlg~~~kPIill~~~g~-~~~l~~~l~~~~~~g~i~~~~~~~i~~~~ 177 (220)
..-..++..||++|. ++|..|+ .|++. .++|++.....+. .+.-....+.+.+.|. ..+.-.+
T Consensus 244 ~~~~~~l~~ad~~v~-~sg~~t~---~Eam~------~G~Pvv~~~~~~~~~~~~~~~~~~l~~~g~------g~~v~~~ 307 (350)
T cd03785 244 DDMAAAYAAADLVIS-RAGASTV---AELAA------LGLPAILIPLPYAADDHQTANARALVKAGA------AVLIPQE 307 (350)
T ss_pred hhHHHHHHhcCEEEE-CCCHhHH---HHHHH------hCCCEEEeecCCCCCCcHHHhHHHHHhCCC------EEEEecC
Confidence 344466789999886 4455664 45565 4899998753221 1110000112222221 2222222
Q ss_pred --CHHHHHHHHHhhcC
Q 039983 178 --NAKELVQKLEDYVP 191 (220)
Q Consensus 178 --d~ee~~~~l~~~~~ 191 (220)
|++++.+.|.+...
T Consensus 308 ~~~~~~l~~~i~~ll~ 323 (350)
T cd03785 308 ELTPERLAAALLELLS 323 (350)
T ss_pred CCCHHHHHHHHHHHhc
Confidence 79999888887753
No 23
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=90.18 E-value=9.2 Score=34.35 Aligned_cols=73 Identities=25% Similarity=0.261 Sum_probs=42.2
Q ss_pred HHHHHHHHhCCeEEEecCCcccHHHHHHHHHHHHhccCCCcEEEEcCCCCchhHHHHHHHHHHcCCCCccccCcEEEcCC
Q 039983 99 QRKAEMARNADCFIALPGGFGTLEELFEVTTWSQLGIHNKPVGLINVEGYYDPILNFIDKSIDEGFIYPSQRSIIVSASN 178 (220)
Q Consensus 99 ~Rk~~~~~~sda~IvlpGG~GTL~El~~~~t~~qlg~~~kPIill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~d 178 (220)
..-..++..||++|.-+|| .|+. |++. .++|+|+.+..+-.+. ...+.+.+.|+ .+...|
T Consensus 265 ~~~~~l~~~aD~~v~~~gg-~t~~---EA~a------~g~PvI~~~~~~g~~~--~n~~~~~~~G~--------~~~~~~ 324 (380)
T PRK13609 265 ENIDELFRVTSCMITKPGG-ITLS---EAAA------LGVPVILYKPVPGQEK--ENAMYFERKGA--------AVVIRD 324 (380)
T ss_pred hhHHHHHHhccEEEeCCCc-hHHH---HHHH------hCCCEEECCCCCCcch--HHHHHHHhCCc--------EEEECC
Confidence 3444677899988865554 3544 4555 4899988763221111 11111223333 445688
Q ss_pred HHHHHHHHHhhcC
Q 039983 179 AKELVQKLEDYVP 191 (220)
Q Consensus 179 ~ee~~~~l~~~~~ 191 (220)
++++.+.|.+...
T Consensus 325 ~~~l~~~i~~ll~ 337 (380)
T PRK13609 325 DEEVFAKTEALLQ 337 (380)
T ss_pred HHHHHHHHHHHHC
Confidence 8988888877653
No 24
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=89.66 E-value=8 Score=35.01 Aligned_cols=71 Identities=18% Similarity=0.210 Sum_probs=40.1
Q ss_pred HHHHhCCeEEEecCCcccHHHHHHHHHHHHhccCCCcEEEEcCCCCchhHHHHHHHHHHcCCCCccccCcEE-EcCCHHH
Q 039983 103 EMARNADCFIALPGGFGTLEELFEVTTWSQLGIHNKPVGLINVEGYYDPILNFIDKSIDEGFIYPSQRSIIV-SASNAKE 181 (220)
Q Consensus 103 ~~~~~sda~IvlpGG~GTL~El~~~~t~~qlg~~~kPIill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~-~~~d~ee 181 (220)
.++..+|++| -.||.||+.|. +. +++|++++... .+.. .+.+.+.+.|.-. .+. -.-++++
T Consensus 287 ~ll~~~~~~I-~hgG~~t~~Ea---l~------~G~P~v~~p~~--~dq~-~~a~~l~~~g~g~-----~l~~~~~~~~~ 348 (392)
T TIGR01426 287 EILKKADAFI-THGGMNSTMEA---LF------NGVPMVAVPQG--ADQP-MTARRIAELGLGR-----HLPPEEVTAEK 348 (392)
T ss_pred HHHhhCCEEE-ECCCchHHHHH---HH------hCCCEEecCCc--ccHH-HHHHHHHHCCCEE-----EeccccCCHHH
Confidence 3457788554 68889998775 33 58999998531 2222 2234444444211 111 1225677
Q ss_pred HHHHHHhhcC
Q 039983 182 LVQKLEDYVP 191 (220)
Q Consensus 182 ~~~~l~~~~~ 191 (220)
+.+.+.+...
T Consensus 349 l~~ai~~~l~ 358 (392)
T TIGR01426 349 LREAVLAVLS 358 (392)
T ss_pred HHHHHHHHhc
Confidence 7777776653
No 25
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=89.61 E-value=5.6 Score=35.95 Aligned_cols=72 Identities=14% Similarity=0.127 Sum_probs=42.0
Q ss_pred HHHHhCCeEEEecCCcccHHHHHHHHHHHHhccCCCcEEEEcCCCCchhHHHHHHHHHHcCCCCccccCcEEEcCCHHHH
Q 039983 103 EMARNADCFIALPGGFGTLEELFEVTTWSQLGIHNKPVGLINVEGYYDPILNFIDKSIDEGFIYPSQRSIIVSASNAKEL 182 (220)
Q Consensus 103 ~~~~~sda~IvlpGG~GTL~El~~~~t~~qlg~~~kPIill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~d~ee~ 182 (220)
.++..+|+|| --||.||+.|.. . +++|++++.. +.|.. .+.+.+.+.|....-.... -+++++
T Consensus 300 ~ll~~~d~~I-~hgG~~t~~eal---~------~GvP~v~~P~--~~dQ~-~~a~~~~~~G~g~~l~~~~----~~~~~l 362 (401)
T cd03784 300 WLLPRCAAVV-HHGGAGTTAAAL---R------AGVPQLVVPF--FGDQP-FWAARVAELGAGPALDPRE----LTAERL 362 (401)
T ss_pred HHhhhhheee-ecCCchhHHHHH---H------cCCCEEeeCC--CCCcH-HHHHHHHHCCCCCCCCccc----CCHHHH
Confidence 4567788877 567789987753 3 5899999953 33422 2334566656322111111 267777
Q ss_pred HHHHHhhcC
Q 039983 183 VQKLEDYVP 191 (220)
Q Consensus 183 ~~~l~~~~~ 191 (220)
.+.+++...
T Consensus 363 ~~al~~~l~ 371 (401)
T cd03784 363 AAALRRLLD 371 (401)
T ss_pred HHHHHHHhC
Confidence 777766543
No 26
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=88.64 E-value=17 Score=32.97 Aligned_cols=73 Identities=22% Similarity=0.331 Sum_probs=39.2
Q ss_pred HHHHhCCeEEEecCCcccHHHHHHHHHHHHhccCCCcEEEEcCCCC---chhHHHHHHHHHHcCCCCccccCcEEEcCCH
Q 039983 103 EMARNADCFIALPGGFGTLEELFEVTTWSQLGIHNKPVGLINVEGY---YDPILNFIDKSIDEGFIYPSQRSIIVSASNA 179 (220)
Q Consensus 103 ~~~~~sda~IvlpGG~GTL~El~~~~t~~qlg~~~kPIill~~~g~---~~~l~~~l~~~~~~g~i~~~~~~~i~~~~d~ 179 (220)
.++..||++|. -||.+|+.|+. . .++|.+++-.... .+...+ .+.+.+.|....-. .-.-++
T Consensus 248 ~~~~~adlvIs-r~G~~t~~E~~---~------~g~P~I~iP~~~~~~~~~Q~~N-a~~l~~~g~~~~l~----~~~~~~ 312 (352)
T PRK12446 248 DILAITDFVIS-RAGSNAIFEFL---T------LQKPMLLIPLSKFASRGDQILN-AESFERQGYASVLY----EEDVTV 312 (352)
T ss_pred HHHHhCCEEEE-CCChhHHHHHH---H------cCCCEEEEcCCCCCCCchHHHH-HHHHHHCCCEEEcc----hhcCCH
Confidence 46789995555 55667877764 2 4899999842111 122222 24455555322100 111157
Q ss_pred HHHHHHHHhhc
Q 039983 180 KELVQKLEDYV 190 (220)
Q Consensus 180 ee~~~~l~~~~ 190 (220)
+++.+.+.+..
T Consensus 313 ~~l~~~l~~ll 323 (352)
T PRK12446 313 NSLIKHVEELS 323 (352)
T ss_pred HHHHHHHHHHH
Confidence 77777777654
No 27
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=88.19 E-value=21 Score=32.84 Aligned_cols=81 Identities=17% Similarity=0.116 Sum_probs=46.9
Q ss_pred cCCHHHHHHHHHHhCCeEEEecCCcccHHHHHHHHHHHHhccCCCcEEEEcCCCCc--hhHHHHHHHHHHcCCCCccccC
Q 039983 94 VDHMHQRKAEMARNADCFIALPGGFGTLEELFEVTTWSQLGIHNKPVGLINVEGYY--DPILNFIDKSIDEGFIYPSQRS 171 (220)
Q Consensus 94 ~~~~~~Rk~~~~~~sda~IvlpGG~GTL~El~~~~t~~qlg~~~kPIill~~~g~~--~~l~~~l~~~~~~g~i~~~~~~ 171 (220)
+..|.......+..||.+|.=+| ..|+.|++ . .++|.|++.. .++ ++-..-.+.+.+.|. .
T Consensus 239 v~~f~~dm~~~~~~ADLvIsRaG-a~Ti~E~~---a------~g~P~IliP~-p~~~~~~Q~~NA~~l~~~ga------a 301 (357)
T COG0707 239 VLPFIDDMAALLAAADLVISRAG-ALTIAELL---A------LGVPAILVPY-PPGADGHQEYNAKFLEKAGA------A 301 (357)
T ss_pred EeeHHhhHHHHHHhccEEEeCCc-ccHHHHHH---H------hCCCEEEeCC-CCCccchHHHHHHHHHhCCC------E
Confidence 33444445567788898776655 68999975 2 3799999964 344 222211233444443 1
Q ss_pred cEEEcC--CHHHHHHHHHhhcC
Q 039983 172 IIVSAS--NAKELVQKLEDYVP 191 (220)
Q Consensus 172 ~i~~~~--d~ee~~~~l~~~~~ 191 (220)
.++--+ +++++.+.|.+...
T Consensus 302 ~~i~~~~lt~~~l~~~i~~l~~ 323 (357)
T COG0707 302 LVIRQSELTPEKLAELILRLLS 323 (357)
T ss_pred EEeccccCCHHHHHHHHHHHhc
Confidence 122112 47788888887654
No 28
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=86.17 E-value=25 Score=31.65 Aligned_cols=78 Identities=13% Similarity=0.224 Sum_probs=53.0
Q ss_pred HHHHhCCeEEEecCCcccHHHHHHHHHHHHhccCCCcEEEEcCCCCchhHHHHHHHHHHcCCCCccccC--c-----EEE
Q 039983 103 EMARNADCFIALPGGFGTLEELFEVTTWSQLGIHNKPVGLINVEGYYDPILNFIDKSIDEGFIYPSQRS--I-----IVS 175 (220)
Q Consensus 103 ~~~~~sda~IvlpGG~GTL~El~~~~t~~qlg~~~kPIill~~~g~~~~l~~~l~~~~~~g~i~~~~~~--~-----i~~ 175 (220)
-++..||+|||-+-++-=+. |+++ .++||.++...+--..+..+++.|.+.|.+..-... . +.-
T Consensus 224 ~~La~ad~i~VT~DSvSMvs---EA~~------tG~pV~v~~l~~~~~r~~r~~~~L~~~g~~r~~~~~~~~~~~~~~~p 294 (311)
T PF06258_consen 224 GFLAAADAIVVTEDSVSMVS---EAAA------TGKPVYVLPLPGRSGRFRRFHQSLEERGAVRPFTGWRDLEQWTPYEP 294 (311)
T ss_pred HHHHhCCEEEEcCccHHHHH---HHHH------cCCCEEEecCCCcchHHHHHHHHHHHCCCEEECCCcccccccccCCC
Confidence 46789999999887665554 4454 479999998776555677788889999987644322 1 333
Q ss_pred cCCHHHHHHHHHhh
Q 039983 176 ASNAKELVQKLEDY 189 (220)
Q Consensus 176 ~~d~ee~~~~l~~~ 189 (220)
.++.+.+.+.|.+.
T Consensus 295 l~et~r~A~~i~~r 308 (311)
T PF06258_consen 295 LDETDRVAAEIRER 308 (311)
T ss_pred ccHHHHHHHHHHHH
Confidence 45556666666543
No 29
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=85.12 E-value=11 Score=33.63 Aligned_cols=77 Identities=16% Similarity=0.157 Sum_probs=40.3
Q ss_pred HHHHHhCCeEEEecCCcccHHHHHHHHHHHHhccCCCcEEEEcCCCCchhHHHHHHHHHHcCCCC------cc--ccCcE
Q 039983 102 AEMARNADCFIALPGGFGTLEELFEVTTWSQLGIHNKPVGLINVEGYYDPILNFIDKSIDEGFIY------PS--QRSII 173 (220)
Q Consensus 102 ~~~~~~sda~IvlpGG~GTL~El~~~~t~~qlg~~~kPIill~~~g~~~~l~~~l~~~~~~g~i~------~~--~~~~i 173 (220)
..+...||++|. ++|..|+ |. +. .++|+|+.-..+.|..... +++...+++. .. ...++
T Consensus 256 ~~~~~~aDl~v~-~sG~~~l-Ea---~a------~G~PvI~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~ 322 (380)
T PRK00025 256 REAMAAADAALA-ASGTVTL-EL---AL------LKVPMVVGYKVSPLTFWIA--KRLVKVPYVSLPNLLAGRELVPELL 322 (380)
T ss_pred HHHHHhCCEEEE-CccHHHH-HH---HH------hCCCEEEEEccCHHHHHHH--HHHHcCCeeehHHHhcCCCcchhhc
Confidence 456789998877 5677776 54 33 3899987632222221111 1222111111 00 01223
Q ss_pred EEcCCHHHHHHHHHhhcC
Q 039983 174 VSASNAKELVQKLEDYVP 191 (220)
Q Consensus 174 ~~~~d~ee~~~~l~~~~~ 191 (220)
.-..|++++.+.+.+...
T Consensus 323 ~~~~~~~~l~~~i~~ll~ 340 (380)
T PRK00025 323 QEEATPEKLARALLPLLA 340 (380)
T ss_pred CCCCCHHHHHHHHHHHhc
Confidence 334578888888877654
No 30
>COG3613 Nucleoside 2-deoxyribosyltransferase [Nucleotide transport and metabolism]
Probab=83.67 E-value=8.3 Score=32.05 Aligned_cols=44 Identities=25% Similarity=0.189 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhCCeEEEe--cCC----cccHHHHHHHHHHHHhccCCCcEEEEcCC
Q 039983 97 MHQRKAEMARNADCFIAL--PGG----FGTLEELFEVTTWSQLGIHNKPVGLINVE 146 (220)
Q Consensus 97 ~~~Rk~~~~~~sda~Ivl--pGG----~GTL~El~~~~t~~qlg~~~kPIill~~~ 146 (220)
+.+=...+++.||++|+. |=- .||.-|+-.+..+ +||++.+..+
T Consensus 58 i~e~d~~~i~~aD~vla~ld~fr~~~DsGTa~E~GYa~Al------gKPv~~~~~d 107 (172)
T COG3613 58 IYEADIKLIDQADIVLANLDPFRPDPDSGTAFELGYAIAL------GKPVYAYRKD 107 (172)
T ss_pred HHHHHHHHHhhcCEEEEecCCCCCCCCCcchHHHHHHHHc------CCceEEEeec
Confidence 345566778899998887 444 8999999998874 8999988653
No 31
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=83.36 E-value=17 Score=31.86 Aligned_cols=37 Identities=27% Similarity=0.195 Sum_probs=26.7
Q ss_pred HHHHHHHHHhCCeEEEecCCcccHHHHHHHHHHHHhccCCCcEEEEcC
Q 039983 98 HQRKAEMARNADCFIALPGGFGTLEELFEVTTWSQLGIHNKPVGLINV 145 (220)
Q Consensus 98 ~~Rk~~~~~~sda~IvlpGG~GTL~El~~~~t~~qlg~~~kPIill~~ 145 (220)
...-.-++..||.+|. .|| +|+-|+ +. .++|++++..
T Consensus 232 ~~~m~~lm~~aDl~Is-~~G-~T~~E~---~a------~g~P~i~i~~ 268 (279)
T TIGR03590 232 VENMAELMNEADLAIG-AAG-STSWER---CC------LGLPSLAICL 268 (279)
T ss_pred HHHHHHHHHHCCEEEE-CCc-hHHHHH---HH------cCCCEEEEEe
Confidence 3444567789999998 566 898775 33 4799998854
No 32
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=83.08 E-value=25 Score=32.39 Aligned_cols=72 Identities=13% Similarity=0.068 Sum_probs=41.8
Q ss_pred CCeEE-EecCCcccHHHHHHHHHHHHhc-cCCCcEEEEcCCCCchhHHHHHHHHHHcCCCCccccCcEEEcCCHHHHHHH
Q 039983 108 ADCFI-ALPGGFGTLEELFEVTTWSQLG-IHNKPVGLINVEGYYDPILNFIDKSIDEGFIYPSQRSIIVSASNAKELVQK 185 (220)
Q Consensus 108 sda~I-vlpGG~GTL~El~~~~t~~qlg-~~~kPIill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~d~ee~~~~ 185 (220)
.|+++ .++|++...+++.+.+.-..-. ..+|||++-..+...+..... +.+.|+ -+.+++|++++++.
T Consensus 311 vd~vlv~~~~~~~~~~~va~~i~~~~~~~~~~kPvv~~~~g~~~~~~~~~---L~~~Gi-------~ip~f~~pe~A~~a 380 (388)
T PRK00696 311 VKAILVNIFGGITRCDVIAEGIIAAVKEVGVTVPLVVRLEGTNVELGKKI---LAESGL-------NIIAADTLDDAAQK 380 (388)
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEeCCCCHHHHHHH---HHHCCC-------CceecCCHHHHHHH
Confidence 46554 4567777777777776543322 157999554322222333322 222221 16688999999999
Q ss_pred HHhh
Q 039983 186 LEDY 189 (220)
Q Consensus 186 l~~~ 189 (220)
+.+.
T Consensus 381 l~~~ 384 (388)
T PRK00696 381 AVEA 384 (388)
T ss_pred HHHH
Confidence 8764
No 33
>COG0063 Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=80.20 E-value=16 Score=32.69 Aligned_cols=132 Identities=20% Similarity=0.194 Sum_probs=69.1
Q ss_pred HCCCeEEEcCCC--cChhHHHHHHHHhcC-CcEEEEeCCcccccccCCCCCceEeecC--CHH-HHHHHHHHhCCeEEEe
Q 039983 41 SRGLDLVYGGGS--VGLMGLISEEVHRGG-RHVLGIIPKALMKKELTGVTLGEVKPVD--HMH-QRKAEMARNADCFIAL 114 (220)
Q Consensus 41 ~~g~~lVtGGg~--~GlM~ava~gA~~~g-G~viGv~P~~~~~~e~~~~~~~~~~~~~--~~~-~Rk~~~~~~sda~Ivl 114 (220)
++|..+|-||.. .|-...++.+|+.+| |.|.=.+|...... ......++++.. +.. ..+..+.+..|++++=
T Consensus 31 ~~G~vliigG~~~y~GA~~laa~aAl~~GaglV~v~~~~~~~~~--~~s~~Pe~mv~~~~~~~~~~~~~~~~~~~avviG 108 (284)
T COG0063 31 DYGRVLIIGGSRGYTGAPVLAALAALRAGAGLVSLASPPEAASA--LKSYLPELMVIEVEGKKLLEERELVERADAVVIG 108 (284)
T ss_pred CCCeEEEEcCCCCCCCHHHHHHHHHHHhCCCeEEEecchhhhhh--HhhcCcceeEeecccchhhHHhhhhccCCEEEEC
Confidence 368888888763 466667788888887 55544455421101 011122333322 222 2233566788887765
Q ss_pred cCCcccHHHHHHHHHHHHhccCCCcEEEEcCCCCchhHHHHHHHHHHcCCCCccccCcEEEcCCHHHHHHHHH
Q 039983 115 PGGFGTLEELFEVTTWSQLGIHNKPVGLINVEGYYDPILNFIDKSIDEGFIYPSQRSIIVSASNAKELVQKLE 187 (220)
Q Consensus 115 pGG~GTL~El~~~~t~~qlg~~~kPIill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~d~ee~~~~l~ 187 (220)
| |.|.-+|..+++........ +|+++ +-++.+ .+ .+..... ....++++..+-|.-..+.
T Consensus 109 p-GlG~~~~~~~~~~~~l~~~~-~p~Vi-DADaL~-----~l---a~~~~~~--~~~~~VlTPH~gEf~rL~g 168 (284)
T COG0063 109 P-GLGRDAEGQEALKELLSSDL-KPLVL-DADALN-----LL---AELPDLL--DERKVVLTPHPGEFARLLG 168 (284)
T ss_pred C-CCCCCHHHHHHHHHHHhccC-CCEEE-eCcHHH-----HH---HhCcccc--cCCcEEECCCHHHHHHhcC
Confidence 4 58888876665543222222 89876 444432 11 1111111 1122777888888776654
No 34
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=79.64 E-value=47 Score=29.95 Aligned_cols=56 Identities=20% Similarity=0.328 Sum_probs=41.1
Q ss_pred HHHHhCCeEEEecCCcccHHHHHHHHHHHHhccCCCcEEEEcCCCC-chhHHHHHHHHHHcCCCCc
Q 039983 103 EMARNADCFIALPGGFGTLEELFEVTTWSQLGIHNKPVGLINVEGY-YDPILNFIDKSIDEGFIYP 167 (220)
Q Consensus 103 ~~~~~sda~IvlpGG~GTL~El~~~~t~~qlg~~~kPIill~~~g~-~~~l~~~l~~~~~~g~i~~ 167 (220)
-|+..+|++|+---++.-..|. .+ .+|||.++-.++| -..+.-|++.+.+.+....
T Consensus 240 ~~La~Adyii~TaDSinM~sEA---as------TgkPv~~~~~~~~~s~K~r~Fi~~L~eq~~AR~ 296 (329)
T COG3660 240 DMLAAADYIISTADSINMCSEA---AS------TGKPVFILEPPNFNSLKFRIFIEQLVEQKIARP 296 (329)
T ss_pred HHHhhcceEEEecchhhhhHHH---hc------cCCCeEEEecCCcchHHHHHHHHHHHHhhhccc
Confidence 4678899999988877776654 33 4899999988788 5566667777777665443
No 35
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=79.36 E-value=1.8 Score=34.46 Aligned_cols=34 Identities=32% Similarity=0.478 Sum_probs=21.9
Q ss_pred HHHHHhCCeEEEecCCcccHHHHHHHHHHHHhccCCCcEEEEcC
Q 039983 102 AEMARNADCFIALPGGFGTLEELFEVTTWSQLGIHNKPVGLINV 145 (220)
Q Consensus 102 ~~~~~~sda~IvlpGG~GTL~El~~~~t~~qlg~~~kPIill~~ 145 (220)
..+++.|| +||--||.||+.|+. . .++|.|++..
T Consensus 67 ~~~m~~aD-lvIs~aG~~Ti~E~l---~------~g~P~I~ip~ 100 (167)
T PF04101_consen 67 AELMAAAD-LVISHAGAGTIAEAL---A------LGKPAIVIPL 100 (167)
T ss_dssp HHHHHHHS-EEEECS-CHHHHHHH---H------CT--EEEE--
T ss_pred HHHHHHcC-EEEeCCCccHHHHHH---H------cCCCeeccCC
Confidence 35668889 667778999998764 3 5899998843
No 36
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=79.03 E-value=4 Score=36.54 Aligned_cols=46 Identities=24% Similarity=0.512 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHCCCe-EEEcCCCcChhHHHHHHHHhcCCcEEEEeCCc
Q 039983 31 AAVDLGNELVSRGLD-LVYGGGSVGLMGLISEEVHRGGRHVLGIIPKA 77 (220)
Q Consensus 31 ~A~~lG~~lA~~g~~-lVtGGg~~GlM~ava~gA~~~gG~viGv~P~~ 77 (220)
.|.++++.++..++. ||.+||- |...+++.|....+...+||+|..
T Consensus 46 ~a~~~a~~a~~~~~D~via~GGD-GTv~evingl~~~~~~~LgilP~G 92 (301)
T COG1597 46 DAIEIAREAAVEGYDTVIAAGGD-GTVNEVANGLAGTDDPPLGILPGG 92 (301)
T ss_pred cHHHHHHHHHhcCCCEEEEecCc-chHHHHHHHHhcCCCCceEEecCC
Confidence 456677777766665 5567776 999999999999988889999964
No 37
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=77.64 E-value=7.1 Score=31.51 Aligned_cols=81 Identities=14% Similarity=0.087 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHCCCeEEEcCCCcChhHHHHHHHHhcCCcEEEEeCCcccccccCCCCCceEeecCCHHHHHHHHHHhCC
Q 039983 30 KAAVDLGNELVSRGLDLVYGGGSVGLMGLISEEVHRGGRHVLGIIPKALMKKELTGVTLGEVKPVDHMHQRKAEMARNAD 109 (220)
Q Consensus 30 ~~A~~lG~~lA~~g~~lVtGGg~~GlM~ava~gA~~~gG~viGv~P~~~~~~e~~~~~~~~~~~~~~~~~Rk~~~~~~sd 109 (220)
.-+.-+.+.|+..|+.++++|.. --.+.+++.|.+....+|||.--. ..|.. .+. ..+..+-..-.+
T Consensus 27 ~gakvia~~l~d~GfeVi~~g~~-~tp~e~v~aA~~~dv~vIgvSsl~-----g~h~~-----l~~--~lve~lre~G~~ 93 (143)
T COG2185 27 RGAKVIARALADAGFEVINLGLF-QTPEEAVRAAVEEDVDVIGVSSLD-----GGHLT-----LVP--GLVEALREAGVE 93 (143)
T ss_pred cchHHHHHHHHhCCceEEecCCc-CCHHHHHHHHHhcCCCEEEEEecc-----chHHH-----HHH--HHHHHHHHhCCc
Confidence 45677888999999999999988 777899999999999999994211 11111 111 223333334455
Q ss_pred eEEEecCCcccHHH
Q 039983 110 CFIALPGGFGTLEE 123 (220)
Q Consensus 110 a~IvlpGG~GTL~E 123 (220)
.++++.||.=..++
T Consensus 94 ~i~v~~GGvip~~d 107 (143)
T COG2185 94 DILVVVGGVIPPGD 107 (143)
T ss_pred ceEEeecCccCchh
Confidence 66667777665555
No 38
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=77.23 E-value=59 Score=29.77 Aligned_cols=75 Identities=12% Similarity=0.089 Sum_probs=40.4
Q ss_pred HHHhCCeEEEecCCcccHHHHHHHHHHHHhccCCCcEEEEcCCCCchhHHHHHHHHHHcCCCC------ccc--cCcEEE
Q 039983 104 MARNADCFIALPGGFGTLEELFEVTTWSQLGIHNKPVGLINVEGYYDPILNFIDKSIDEGFIY------PSQ--RSIIVS 175 (220)
Q Consensus 104 ~~~~sda~IvlpGG~GTL~El~~~~t~~qlg~~~kPIill~~~g~~~~l~~~l~~~~~~g~i~------~~~--~~~i~~ 175 (220)
.+..||++|.-. |..|+ |+ +. .++|+|+.-.-..+..++. ++++.-.++. .+. .+++.-
T Consensus 264 ~l~aADl~V~~S-Gt~tl-Ea---~a------~G~P~Vv~yk~~pl~~~~~--~~~~~~~~~~~~nil~~~~~~pel~q~ 330 (385)
T TIGR00215 264 AMFAADAALLAS-GTAAL-EA---AL------IKTPMVVGYRMKPLTFLIA--RRLVKTDYISLPNILANRLLVPELLQE 330 (385)
T ss_pred HHHhCCEEeecC-CHHHH-HH---HH------cCCCEEEEEcCCHHHHHHH--HHHHcCCeeeccHHhcCCccchhhcCC
Confidence 668899887766 55676 54 33 4899988743222222211 2222222211 111 233334
Q ss_pred cCCHHHHHHHHHhhcC
Q 039983 176 ASNAKELVQKLEDYVP 191 (220)
Q Consensus 176 ~~d~ee~~~~l~~~~~ 191 (220)
.-+++.+.+.+.++..
T Consensus 331 ~~~~~~l~~~~~~ll~ 346 (385)
T TIGR00215 331 ECTPHPLAIALLLLLE 346 (385)
T ss_pred CCCHHHHHHHHHHHhc
Confidence 4578888888887753
No 39
>TIGR00196 yjeF_cterm yjeF C-terminal region, hydroxyethylthiazole kinase-related. The present model may hit hydroxyethylthiazole kinase, an enzyme associated with thiamine biosynthesis.
Probab=75.21 E-value=20 Score=31.11 Aligned_cols=42 Identities=17% Similarity=0.245 Sum_probs=23.2
Q ss_pred HHHHHhCCeEEEecCCcccHHHHHHHHHHHHhccCCCcEEEEcCCC
Q 039983 102 AEMARNADCFIALPGGFGTLEELFEVTTWSQLGIHNKPVGLINVEG 147 (220)
Q Consensus 102 ~~~~~~sda~IvlpGG~GTL~El~~~~t~~qlg~~~kPIill~~~g 147 (220)
..++..+|++++ .+|.++-+.+.++.... ...++|| +++.++
T Consensus 87 ~~~~~~~davvi-g~Gl~~~~~~~~l~~~~--~~~~~pv-VlDa~g 128 (272)
T TIGR00196 87 EELLERYDVVVI-GPGLGQDPSFKKAVEEV--LELDKPV-VLDADA 128 (272)
T ss_pred HhhhccCCEEEE-cCCCCCCHHHHHHHHHH--HhcCCCE-EEEhHH
Confidence 344566777666 66698865533333222 2347886 456543
No 40
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=71.02 E-value=28 Score=27.62 Aligned_cols=66 Identities=14% Similarity=0.181 Sum_probs=36.6
Q ss_pred hCCeEEEecCCcccHHHHHHHHHHHHhccCCCcEEEEcCCC-----------------CchhHHHHHHHHHHcCCCCccc
Q 039983 107 NADCFIALPGGFGTLEELFEVTTWSQLGIHNKPVGLINVEG-----------------YYDPILNFIDKSIDEGFIYPSQ 169 (220)
Q Consensus 107 ~sda~IvlpGG~GTL~El~~~~t~~qlg~~~kPIill~~~g-----------------~~~~l~~~l~~~~~~g~i~~~~ 169 (220)
..+++++.--|++--.+++++... .... ||||++..+. =++-+...++
T Consensus 54 ~t~~I~ly~E~~~d~~~f~~~~~~--a~~~-KPVv~lk~Grt~~g~~aa~sHTgslag~~~~~~a~~~------------ 118 (138)
T PF13607_consen 54 DTRVIVLYLEGIGDGRRFLEAARR--AARR-KPVVVLKAGRTEAGARAAASHTGSLAGDDAVYDAALR------------ 118 (138)
T ss_dssp S--EEEEEES--S-HHHHHHHHHH--HCCC-S-EEEEE---------------------HHHHHHHHH------------
T ss_pred CCCEEEEEccCCCCHHHHHHHHHH--HhcC-CCEEEEeCCCchhhhhhhhccCCcccCcHHHHHHHHH------------
Confidence 355788888889988888877643 3333 9999997632 1111111111
Q ss_pred cCcEEEcCCHHHHHHHHH
Q 039983 170 RSIIVSASNAKELVQKLE 187 (220)
Q Consensus 170 ~~~i~~~~d~ee~~~~l~ 187 (220)
..-++.++|.+|+++..+
T Consensus 119 ~aGv~~v~~~~el~~~~~ 136 (138)
T PF13607_consen 119 QAGVVRVDDLDELLDAAK 136 (138)
T ss_dssp HCTEEEESSHHHHHHHHC
T ss_pred HcCceEECCHHHHHHHHH
Confidence 134788999999998764
No 41
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=70.20 E-value=87 Score=28.56 Aligned_cols=82 Identities=15% Similarity=0.077 Sum_probs=46.6
Q ss_pred eEeecCCHHHHHHHHHHhCCeEEEec---CCcccHHHHHHHHHHHHhccCCCcEEEEcCCCCchhHHHHHHHHHHcCCCC
Q 039983 90 EVKPVDHMHQRKAEMARNADCFIALP---GGFGTLEELFEVTTWSQLGIHNKPVGLINVEGYYDPILNFIDKSIDEGFIY 166 (220)
Q Consensus 90 ~~~~~~~~~~Rk~~~~~~sda~Ivlp---GG~GTL~El~~~~t~~qlg~~~kPIill~~~g~~~~l~~~l~~~~~~g~i~ 166 (220)
.+++.+++. .-..+...||++++.+ .+.|.- +.|++. .++|||.-...+-+..+.+ .+.+.
T Consensus 303 ~v~l~~~~~-el~~~y~~aDi~~v~~S~~e~~g~~--~lEAma------~G~PVI~g~~~~~~~e~~~---~~~~~---- 366 (425)
T PRK05749 303 DVLLGDTMG-ELGLLYAIADIAFVGGSLVKRGGHN--PLEPAA------FGVPVISGPHTFNFKEIFE---RLLQA---- 366 (425)
T ss_pred cEEEEecHH-HHHHHHHhCCEEEECCCcCCCCCCC--HHHHHH------hCCCEEECCCccCHHHHHH---HHHHC----
Confidence 344555544 3446668999876642 223432 567776 4899987432111233332 22222
Q ss_pred ccccCcEEEcCCHHHHHHHHHhhcC
Q 039983 167 PSQRSIIVSASNAKELVQKLEDYVP 191 (220)
Q Consensus 167 ~~~~~~i~~~~d~ee~~~~l~~~~~ 191 (220)
..++..+|++++.+.|.+...
T Consensus 367 ----g~~~~~~d~~~La~~l~~ll~ 387 (425)
T PRK05749 367 ----GAAIQVEDAEDLAKAVTYLLT 387 (425)
T ss_pred ----CCeEEECCHHHHHHHHHHHhc
Confidence 335557889998888887653
No 42
>COG1010 CobJ Precorrin-3B methylase [Coenzyme metabolism]
Probab=68.15 E-value=68 Score=28.18 Aligned_cols=107 Identities=24% Similarity=0.343 Sum_probs=57.3
Q ss_pred HHHHHHCCC--eEEEcCCCcChhHH--HHHHHHh-cC--CcEEEEeCCcccc--------cccCCCC----CceEeecCC
Q 039983 36 GNELVSRGL--DLVYGGGSVGLMGL--ISEEVHR-GG--RHVLGIIPKALMK--------KELTGVT----LGEVKPVDH 96 (220)
Q Consensus 36 G~~lA~~g~--~lVtGGg~~GlM~a--va~gA~~-~g--G~viGv~P~~~~~--------~e~~~~~----~~~~~~~~~ 96 (220)
+-.+|+.|+ .+|++|-+ |+-+- +.-.+.+ .+ .-=+-|+|+.--. ....|.. ++++...-.
T Consensus 65 AielA~~G~~ValVSsGDp-gVYgMA~lv~E~~~~~~~~~v~veVvPGvTA~~aaAa~lGAPL~hDF~~ISLSDlLtPwe 143 (249)
T COG1010 65 AIELAAEGRDVALVSSGDP-GVYGMAGLVLEAAEEEGWYDVDVEVVPGVTAALAAAARLGAPLGHDFCVISLSDLLTPWE 143 (249)
T ss_pred HHHHHhcCCeEEEEeCCCc-cHHHhHHHHHHHHHhcCCCCccEEEeCChHHHHHHHHHhCCCcccceEEEEhHhcCCcHH
Confidence 334455555 57899888 88543 3333444 44 2346677764311 1111221 111111222
Q ss_pred HHHHHHHHHHhCCeEEEe--cCCcc---cHHHHHHHHHHHHhccCCCcEEEEcC
Q 039983 97 MHQRKAEMARNADCFIAL--PGGFG---TLEELFEVTTWSQLGIHNKPVGLINV 145 (220)
Q Consensus 97 ~~~Rk~~~~~~sda~Ivl--pGG~G---TL~El~~~~t~~qlg~~~kPIill~~ 145 (220)
.-++.......+|.+|+| |=+-+ -+.+.++++. +......||+|...
T Consensus 144 ~IekRl~aAA~adfVi~~YNP~s~~R~~~~~~a~eil~--~~r~~~tpVgivrn 195 (249)
T COG1010 144 VIEKRLRAAAEADFVIALYNPISKRRPEQLGRAFEILR--EHRSPDTPVGIVRN 195 (249)
T ss_pred HHHHHHHHHhhCCEEEEEECCccccchHHHHHHHHHHH--HhcCCCCcEEEEec
Confidence 246666777889999888 66666 4455555542 22234689999864
No 43
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=68.13 E-value=85 Score=27.64 Aligned_cols=104 Identities=23% Similarity=0.154 Sum_probs=53.6
Q ss_pred CCeEEEcCCCcChhHHHHHHHHhcCC-cEEEEeCCcccccccCCCCCceEeecCCHHHHHHHHHHhCCeEEEecCCcccH
Q 039983 43 GLDLVYGGGSVGLMGLISEEVHRGGR-HVLGIIPKALMKKELTGVTLGEVKPVDHMHQRKAEMARNADCFIALPGGFGTL 121 (220)
Q Consensus 43 g~~lVtGGg~~GlM~ava~gA~~~gG-~viGv~P~~~~~~e~~~~~~~~~~~~~~~~~Rk~~~~~~sda~IvlpGG~GTL 121 (220)
++.||+||+. | ...+.+...+... .++--.++.. .+... ..+.+.....+.-.-++..||++|.- ||.+|+
T Consensus 189 ~~iLv~~g~~-~-~~~l~~~l~~~~~~~~i~~~~~~~--~~~~~---~~v~~~~~~~~~~~~~l~~ad~vI~~-~G~~t~ 260 (321)
T TIGR00661 189 DYILVYIGFE-Y-RYKILELLGKIANVKFVCYSYEVA--KNSYN---ENVEIRRITTDNFKELIKNAELVITH-GGFSLI 260 (321)
T ss_pred CcEEEECCcC-C-HHHHHHHHHhCCCeEEEEeCCCCC--ccccC---CCEEEEECChHHHHHHHHhCCEEEEC-CChHHH
Confidence 5678998654 5 4555554434443 2221122211 11111 12222221113444566788887775 677887
Q ss_pred HHHHHHHHHHHhccCCCcEEEEcCCCCchhHHHHHHHHHHcCC
Q 039983 122 EELFEVTTWSQLGIHNKPVGLINVEGYYDPILNFIDKSIDEGF 164 (220)
Q Consensus 122 ~El~~~~t~~qlg~~~kPIill~~~g~~~~l~~~l~~~~~~g~ 164 (220)
.|. +. +++|++++...+.++...+- +.+.+.|.
T Consensus 261 ~Ea---~~------~g~P~l~ip~~~~~eQ~~na-~~l~~~g~ 293 (321)
T TIGR00661 261 SEA---LS------LGKPLIVIPDLGQFEQGNNA-VKLEDLGC 293 (321)
T ss_pred HHH---HH------cCCCEEEEcCCCcccHHHHH-HHHHHCCC
Confidence 664 43 58999999765555554332 34445554
No 44
>PF01256 Carb_kinase: Carbohydrate kinase; InterPro: IPR000631 This family is related to Hydroxyethylthiazole kinase IPR000417 from INTERPRO and PfkB carbohydrate kinase IPR011611 from INTERPRO implying that it also a carbohydrate kinase. Several uncharacterised proteins have been shown to share regions of similarities, including yeast chromosome XI hypothetical protein YKL151c; Caenorhabditis elegans hypothetical protein R107.2; Escherichia coli hypothetical protein yjeF; Bacillus subtilis hypothetical protein yxkO; Helicobacter pylori hypothetical protein HP1363; Mycobacterium tuberculosis hypothetical protein MtCY77.05c; Mycobacterium leprae hypothetical protein B229_C2_201; Synechocystis sp. (strain PCC 6803) hypothetical protein sll1433; and Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1586. These are proteins of about 30 to 40 kDa whose central region is well conserved.; PDB: 3RSG_A 3RT9_A 3RRF_A 3RTB_A 3RRE_A 3RS9_A 3RSS_A 3RRB_A 3RTA_A 3RTD_A ....
Probab=65.12 E-value=24 Score=30.55 Aligned_cols=127 Identities=20% Similarity=0.239 Sum_probs=62.2
Q ss_pred EEEcCCCcChhHHH---HHHHHhcC-CcEEEEeCCcccccccCCCCCceEeecC-CH--HHHHHHHHHhCCeEEEecCCc
Q 039983 46 LVYGGGSVGLMGLI---SEEVHRGG-RHVLGIIPKALMKKELTGVTLGEVKPVD-HM--HQRKAEMARNADCFIALPGGF 118 (220)
Q Consensus 46 lVtGGg~~GlM~av---a~gA~~~g-G~viGv~P~~~~~~e~~~~~~~~~~~~~-~~--~~Rk~~~~~~sda~IvlpGG~ 118 (220)
+|-||.. +..+|+ +++|+..| |.|.-+.|....+.- .....++++.. .. ...-....+..|++++=|| .
T Consensus 2 lvigGS~-~~~GA~~Laa~aAlr~GaGlV~~~~~~~~~~~~--~~~~Pe~m~~~~~~~~~~~~~~~~~~~~av~iGPG-l 77 (242)
T PF01256_consen 2 LVIGGSE-GYPGAAILAARAALRSGAGLVTLATPESIAPVI--ASYSPEAMVSPLPSDEDVEILELLEKADAVVIGPG-L 77 (242)
T ss_dssp EEEE-BT-SSHHHHHHHHHHHHHTT-SEEEEEECGCCHHHH--HHHTTTSEEEETTHCCHHHHHHHHCH-SEEEE-TT--
T ss_pred EEEECCC-CCCCHHHHHHHHHHHHCCCcEEEEEcHHHHHHH--HhCCceeEEecccchhhhhhHhhhccCCEEEeecC-C
Confidence 5667765 666665 66666666 677766665332110 00111222211 11 1122334577899888887 5
Q ss_pred ccHHHHHHHHHHHHhccCCCcEEEEcCCCCchhHHHHHHHHHHcCCCCccccCcEEEcCCHHHHHHHHHhhc
Q 039983 119 GTLEELFEVTTWSQLGIHNKPVGLINVEGYYDPILNFIDKSIDEGFIYPSQRSIIVSASNAKELVQKLEDYV 190 (220)
Q Consensus 119 GTL~El~~~~t~~qlg~~~kPIill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~d~ee~~~~l~~~~ 190 (220)
|+-++..+.+.. +-...+| ++++-++.| . +.... ......++++..+-|+-+.+....
T Consensus 78 g~~~~~~~~~~~--~~~~~~p-~VlDADaL~-----~---l~~~~---~~~~~~~IlTPH~gE~~rL~~~~~ 135 (242)
T PF01256_consen 78 GRDEETEELLEE--LLESDKP-LVLDADALN-----L---LAENP---KKRNAPVILTPHPGEFARLLGKSV 135 (242)
T ss_dssp SSSHHHHHHHHH--HHHHCST-EEEECHHHH-----C---HHHCC---CCSSSCEEEE-BHHHHHHHHTTTC
T ss_pred CCchhhHHHHHH--HHhhcce-EEEehHHHH-----H---HHhcc---ccCCCCEEECCCHHHHHHHhCCcc
Confidence 666654433321 1123678 455654321 1 11111 334567888999999887776543
No 45
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=64.69 E-value=8.5 Score=29.55 Aligned_cols=34 Identities=21% Similarity=0.325 Sum_probs=22.9
Q ss_pred EEEecCCcccHHHHHHHHHHHHhccCCCcEEEEc
Q 039983 111 FIALPGGFGTLEELFEVTTWSQLGIHNKPVGLIN 144 (220)
Q Consensus 111 ~IvlpGG~GTL~El~~~~t~~qlg~~~kPIill~ 144 (220)
+|+.-||=||++|+...+.-........|+.++-
T Consensus 52 ~vvv~GGDGTi~~vvn~l~~~~~~~~~~plgiiP 85 (124)
T smart00046 52 RVLVCGGDGTVGWVLNALDKRELPLPEPPVAVLP 85 (124)
T ss_pred EEEEEccccHHHHHHHHHHhcccccCCCcEEEeC
Confidence 7778999999999987773211111116888884
No 46
>PRK13337 putative lipid kinase; Reviewed
Probab=63.85 E-value=19 Score=31.91 Aligned_cols=44 Identities=23% Similarity=0.370 Sum_probs=30.0
Q ss_pred HHHHHHHHHCCC-eEEEcCCCcChhHHHHHHHHhcCC-cEEEEeCCc
Q 039983 33 VDLGNELVSRGL-DLVYGGGSVGLMGLISEEVHRGGR-HVLGIIPKA 77 (220)
Q Consensus 33 ~~lG~~lA~~g~-~lVtGGg~~GlM~ava~gA~~~gG-~viGv~P~~ 77 (220)
.++.+.+++.++ .||..||- |-..++..|....+- ..+||+|..
T Consensus 47 ~~~a~~~~~~~~d~vvv~GGD-GTl~~vv~gl~~~~~~~~lgiiP~G 92 (304)
T PRK13337 47 TLAAERAVERKFDLVIAAGGD-GTLNEVVNGIAEKENRPKLGIIPVG 92 (304)
T ss_pred HHHHHHHHhcCCCEEEEEcCC-CHHHHHHHHHhhCCCCCcEEEECCc
Confidence 344444555554 45666776 999999998876643 579999953
No 47
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=62.10 E-value=1.1e+02 Score=28.51 Aligned_cols=95 Identities=25% Similarity=0.203 Sum_probs=53.6
Q ss_pred HHCCCeEEEcCCCcC----hhHHHHHHHHhcCCcEEEEeCCcccccccCCCCCceEeecCCHHHHHHHHHHhCCeEEEec
Q 039983 40 VSRGLDLVYGGGSVG----LMGLISEEVHRGGRHVLGIIPKALMKKELTGVTLGEVKPVDHMHQRKAEMARNADCFIALP 115 (220)
Q Consensus 40 A~~g~~lVtGGg~~G----lM~ava~gA~~~gG~viGv~P~~~~~~e~~~~~~~~~~~~~~~~~Rk~~~~~~sda~Ivlp 115 (220)
+.+....++=|. ++ +-+.+.+.+.+.+.++|=-..+... .. .+--...++..... ...++..||+|| -.
T Consensus 235 ~d~~~vyvslGt-~~~~~~l~~~~~~a~~~l~~~vi~~~~~~~~--~~-~~~p~n~~v~~~~p--~~~~l~~ad~vI-~h 307 (406)
T COG1819 235 ADRPIVYVSLGT-VGNAVELLAIVLEALADLDVRVIVSLGGARD--TL-VNVPDNVIVADYVP--QLELLPRADAVI-HH 307 (406)
T ss_pred CCCCeEEEEcCC-cccHHHHHHHHHHHHhcCCcEEEEecccccc--cc-ccCCCceEEecCCC--HHHHhhhcCEEE-ec
Confidence 334444444333 36 4556667677778887766544111 00 11111233444443 234778888765 58
Q ss_pred CCcccHHHHHHHHHHHHhccCCCcEEEEcCCCCchhH
Q 039983 116 GGFGTLEELFEVTTWSQLGIHNKPVGLINVEGYYDPI 152 (220)
Q Consensus 116 GG~GTL~El~~~~t~~qlg~~~kPIill~~~g~~~~l 152 (220)
||.||..|. +. +++|++++-. .||..
T Consensus 308 GG~gtt~ea---L~------~gvP~vv~P~--~~DQ~ 333 (406)
T COG1819 308 GGAGTTSEA---LY------AGVPLVVIPD--GADQP 333 (406)
T ss_pred CCcchHHHH---HH------cCCCEEEecC--Ccchh
Confidence 999998775 32 5899999854 25553
No 48
>KOG4022 consensus Dihydropteridine reductase DHPR/QDPR [Amino acid transport and metabolism]
Probab=60.47 E-value=58 Score=27.42 Aligned_cols=70 Identities=20% Similarity=0.355 Sum_probs=43.2
Q ss_pred CCCeEEEcCCCcChhHHHHHHHHhcCCcEEEEeCCcccccccCCCCCceEee--cCCHHHHHHHHHH---------hCCe
Q 039983 42 RGLDLVYGGGSVGLMGLISEEVHRGGRHVLGIIPKALMKKELTGVTLGEVKP--VDHMHQRKAEMAR---------NADC 110 (220)
Q Consensus 42 ~g~~lVtGGg~~GlM~ava~gA~~~gG~viGv~P~~~~~~e~~~~~~~~~~~--~~~~~~Rk~~~~~---------~sda 110 (220)
.|..||||| . |..+.++-.+.++++.-++-+- +.+.|++.. .+++ .+++-+.....++ .-|+
T Consensus 3 agrVivYGG-k-GALGSacv~~FkannywV~siD--l~eNe~Ad~---sI~V~~~~swtEQe~~v~~~vg~sL~gekvDa 75 (236)
T KOG4022|consen 3 AGRVIVYGG-K-GALGSACVEFFKANNYWVLSID--LSENEQADS---SILVDGNKSWTEQEQSVLEQVGSSLQGEKVDA 75 (236)
T ss_pred CceEEEEcC-c-chHhHHHHHHHHhcCeEEEEEe--ecccccccc---eEEecCCcchhHHHHHHHHHHHHhhcccccce
Confidence 577899976 5 8889888888888887666542 222333222 2332 3455444444433 3688
Q ss_pred EEEecCCc
Q 039983 111 FIALPGGF 118 (220)
Q Consensus 111 ~IvlpGG~ 118 (220)
++.+.||+
T Consensus 76 v~CVAGGW 83 (236)
T KOG4022|consen 76 VFCVAGGW 83 (236)
T ss_pred EEEeeccc
Confidence 88887765
No 49
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=59.52 E-value=16 Score=32.71 Aligned_cols=106 Identities=21% Similarity=0.249 Sum_probs=61.1
Q ss_pred CCceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEcCCCcChhHHHHHHHHhcCCcEEEEeCCcccccccCCCCCc
Q 039983 10 RFKRVCVFCGSSPDYKYCYRKAAVDLGNELVSRGLDLVYGGGSVGLMGLISEEVHRGGRHVLGIIPKALMKKELTGVTLG 89 (220)
Q Consensus 10 ~~~~I~Vfgss~~~~~~~~~~~A~~lG~~lA~~g~~lVtGGg~~GlM~ava~gA~~~gG~viGv~P~~~~~~e~~~~~~~ 89 (220)
++++|.++.-. + .+...+.+.++.+.|.+.|+.+..---. . ... +. ..
T Consensus 2 ~~kkv~lI~n~--~-~~~~~~~~~~i~~~L~~~g~~v~v~~~~-~---------~~~-----~~------------~~-- 49 (305)
T PRK02645 2 QLKQVIIAYKA--G-SSQAKEAAERCAKQLEARGCKVLMGPSG-P---------KDN-----PY------------PV-- 49 (305)
T ss_pred CcCEEEEEEeC--C-CHHHHHHHHHHHHHHHHCCCEEEEecCc-h---------hhc-----cc------------cc--
Confidence 45678888653 2 3555667888888888888886642211 0 000 00 00
Q ss_pred eEeecCCHHHHHHHHHHhCCeEEEecCCcccHHHHHHHHHHHHhccCCCcEEEEcCC---CCchhH------HHHHHHHH
Q 039983 90 EVKPVDHMHQRKAEMARNADCFIALPGGFGTLEELFEVTTWSQLGIHNKPVGLINVE---GYYDPI------LNFIDKSI 160 (220)
Q Consensus 90 ~~~~~~~~~~Rk~~~~~~sda~IvlpGG~GTL~El~~~~t~~qlg~~~kPIill~~~---g~~~~l------~~~l~~~~ 160 (220)
+ .....+..|.+|++ ||=||+.+.+..+. ..++||+.+|.+ ||.... .+.++.+.
T Consensus 50 -------~---~~~~~~~~d~vi~~-GGDGT~l~~~~~~~-----~~~~pv~gin~~G~lGFL~~~~~~~~~~~~l~~i~ 113 (305)
T PRK02645 50 -------F---LASASELIDLAIVL-GGDGTVLAAARHLA-----PHDIPILSVNVGGHLGFLTHPRDLLQDESVWDRLQ 113 (305)
T ss_pred -------h---hhccccCcCEEEEE-CCcHHHHHHHHHhc-----cCCCCEEEEecCCcceEecCchhhcchHHHHHHHH
Confidence 0 01111245766666 89999988776653 347999999862 566543 24455555
Q ss_pred HcC
Q 039983 161 DEG 163 (220)
Q Consensus 161 ~~g 163 (220)
+..
T Consensus 114 ~g~ 116 (305)
T PRK02645 114 EDR 116 (305)
T ss_pred cCC
Confidence 433
No 50
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=59.02 E-value=47 Score=29.26 Aligned_cols=40 Identities=28% Similarity=0.624 Sum_probs=25.6
Q ss_pred cHHHHHHHHHHHHhccCCCcEEEEcCCCCchhHHH-----HHHHHHHcC
Q 039983 120 TLEELFEVTTWSQLGIHNKPVGLINVEGYYDPILN-----FIDKSIDEG 163 (220)
Q Consensus 120 TL~El~~~~t~~qlg~~~kPIill~~~g~~~~l~~-----~l~~~~~~g 163 (220)
|++.+++.+.-.. ...+.|++++ +||+++.. |++.+.+.|
T Consensus 75 ~~~~~~~~~~~~r-~~~~~p~vlm---~Y~N~i~~~G~e~F~~~~~~aG 119 (263)
T CHL00200 75 NLNKILSILSEVN-GEIKAPIVIF---TYYNPVLHYGINKFIKKISQAG 119 (263)
T ss_pred CHHHHHHHHHHHh-cCCCCCEEEE---ecccHHHHhCHHHHHHHHHHcC
Confidence 4666776665433 2357899887 47776554 677666655
No 51
>COG1057 NadD Nicotinic acid mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=58.90 E-value=14 Score=31.17 Aligned_cols=34 Identities=21% Similarity=0.197 Sum_probs=27.4
Q ss_pred CCceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCC
Q 039983 10 RFKRVCVFCGSSPDYKYCYRKAAVDLGNELVSRG 43 (220)
Q Consensus 10 ~~~~I~Vfgss~~~~~~~~~~~A~~lG~~lA~~g 43 (220)
++++|+|||||=...+.-+...|+++.+.+..--
T Consensus 1 ~~~~i~lfGGsFdP~H~GHl~ia~~~~~~l~ld~ 34 (197)
T COG1057 1 KMKKIALFGGSFDPPHYGHLLIAEEALDQLGLDK 34 (197)
T ss_pred CCceEEEeccCCCCCCHHHHHHHHHHHHhcCCCe
Confidence 4678999999998888888888888888775443
No 52
>cd01171 YXKO-related B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.
Probab=58.81 E-value=54 Score=27.85 Aligned_cols=42 Identities=24% Similarity=0.385 Sum_probs=22.7
Q ss_pred HHHHhCCeEEEecCCcccHHHHHHHHHHHHhccCCCcEEEEcCCCC
Q 039983 103 EMARNADCFIALPGGFGTLEELFEVTTWSQLGIHNKPVGLINVEGY 148 (220)
Q Consensus 103 ~~~~~sda~IvlpGG~GTL~El~~~~t~~qlg~~~kPIill~~~g~ 148 (220)
.+....|++++ .+|.|+-+.+..+..... .+++|++ ++.++.
T Consensus 73 ~~~~~~d~v~i-g~gl~~~~~~~~i~~~~~--~~~~pvV-lDa~~~ 114 (254)
T cd01171 73 ELLERADAVVI-GPGLGRDEEAAEILEKAL--AKDKPLV-LDADAL 114 (254)
T ss_pred hhhccCCEEEE-ecCCCCCHHHHHHHHHHH--hcCCCEE-EEcHHH
Confidence 34456777665 555887544433332222 3467864 576543
No 53
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=58.80 E-value=24 Score=29.26 Aligned_cols=81 Identities=11% Similarity=0.072 Sum_probs=50.3
Q ss_pred hCCeEEEecCCcccHHHHHHHHHHHH-------hccCCCcEEEEcCCCCchh--HHHHHHHHHHcCCC-CccccCcEEEc
Q 039983 107 NADCFIALPGGFGTLEELFEVTTWSQ-------LGIHNKPVGLINVEGYYDP--ILNFIDKSIDEGFI-YPSQRSIIVSA 176 (220)
Q Consensus 107 ~sda~IvlpGG~GTL~El~~~~t~~q-------lg~~~kPIill~~~g~~~~--l~~~l~~~~~~g~i-~~~~~~~i~~~ 176 (220)
.+|++||.|=..+|+.-+..=++-.- .-..++|+++.-. ..|.. -.+-++.+.+.|+. -+.....+.--
T Consensus 75 ~aD~~vIaPATantiAkiA~GiaD~Llt~~a~~~L~~~~pv~i~P~-~m~~~~~~~~Nl~~L~~~G~~ii~P~~g~~~~p 153 (181)
T TIGR00421 75 PFDGMVVVPCSMKTLSAIANGYADNLITRAADVCLKERRKLVLVPR-ETPLNSIHLENMLRLSRMGAIILPPMPAFYTRP 153 (181)
T ss_pred hhCEEEEecCCHhHHHHHHcccCCCHHHHHHHHHHhcCCCEEEEeC-CCcCCHHHHHHHHHHHHCCCEEECCCCcccCCC
Confidence 48999999999999988764321111 1125799999865 44543 22334556666642 22234556666
Q ss_pred CCHHHHHHHHHh
Q 039983 177 SNAKELVQKLED 188 (220)
Q Consensus 177 ~d~ee~~~~l~~ 188 (220)
.+++|+++++..
T Consensus 154 ~~~~~~~~~i~~ 165 (181)
T TIGR00421 154 KSVEDMIDFIVG 165 (181)
T ss_pred CCHHHHHHHHHH
Confidence 899997776654
No 54
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=58.71 E-value=14 Score=28.26 Aligned_cols=40 Identities=30% Similarity=0.369 Sum_probs=25.1
Q ss_pred HHHhCCe--EEEecCCcccHHHHHHHHHHHHhccCCCcEEEEc
Q 039983 104 MARNADC--FIALPGGFGTLEELFEVTTWSQLGIHNKPVGLIN 144 (220)
Q Consensus 104 ~~~~sda--~IvlpGG~GTL~El~~~~t~~qlg~~~kPIill~ 144 (220)
+....+. .|+.-||=||+.|+...+....... ..|+.++.
T Consensus 48 ~~~~~~~~~~ivv~GGDGTl~~vv~~l~~~~~~~-~~~l~iiP 89 (130)
T PF00781_consen 48 ILALDDYPDVIVVVGGDGTLNEVVNGLMGSDRED-KPPLGIIP 89 (130)
T ss_dssp HHHHTTS-SEEEEEESHHHHHHHHHHHCTSTSSS---EEEEEE
T ss_pred HHhhccCccEEEEEcCccHHHHHHHHHhhcCCCc-cceEEEec
Confidence 3445554 8888899999999987774211111 23788874
No 55
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=58.64 E-value=17 Score=27.77 Aligned_cols=43 Identities=28% Similarity=0.406 Sum_probs=28.5
Q ss_pred HHHHHHHHCCC--eEEEcCCCcChhHHHHHHHHhcCC---cEEEEeCCc
Q 039983 34 DLGNELVSRGL--DLVYGGGSVGLMGLISEEVHRGGR---HVLGIIPKA 77 (220)
Q Consensus 34 ~lG~~lA~~g~--~lVtGGg~~GlM~ava~gA~~~gG---~viGv~P~~ 77 (220)
++.+....... .||..||- |-...+..+....+. ..+||+|..
T Consensus 44 ~~~~~~~~~~~~~~ivv~GGD-GTl~~vv~~l~~~~~~~~~~l~iiP~G 91 (130)
T PF00781_consen 44 ALARILALDDYPDVIVVVGGD-GTLNEVVNGLMGSDREDKPPLGIIPAG 91 (130)
T ss_dssp HHHHHHHHTTS-SEEEEEESH-HHHHHHHHHHCTSTSSS--EEEEEE-S
T ss_pred HHHHHHhhccCccEEEEEcCc-cHHHHHHHHHhhcCCCccceEEEecCC
Confidence 34443344444 67777776 888888888888765 479999853
No 56
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=58.14 E-value=1.3e+02 Score=26.44 Aligned_cols=79 Identities=19% Similarity=0.257 Sum_probs=44.2
Q ss_pred CHHHHHHHHHHhCCeEEEecCCcccHHHHHHHHHHHHhccCCCcEEEEcCCC--CchhHHHHHHHHHHcCCCCccccCcE
Q 039983 96 HMHQRKAEMARNADCFIALPGGFGTLEELFEVTTWSQLGIHNKPVGLINVEG--YYDPILNFIDKSIDEGFIYPSQRSII 173 (220)
Q Consensus 96 ~~~~Rk~~~~~~sda~IvlpGG~GTL~El~~~~t~~qlg~~~kPIill~~~g--~~~~l~~~l~~~~~~g~i~~~~~~~i 173 (220)
.+...-..++..||++|. .+|.+|+- |++. .++|++.....+ ..+... ..+.+.+.| ...+
T Consensus 241 g~~~~~~~~~~~~d~~i~-~~g~~~~~---Ea~~------~g~Pvv~~~~~~~~~~~~~~-~~~~i~~~~------~g~~ 303 (357)
T PRK00726 241 PFIDDMAAAYAAADLVIC-RAGASTVA---ELAA------AGLPAILVPLPHAADDHQTA-NARALVDAG------AALL 303 (357)
T ss_pred ehHhhHHHHHHhCCEEEE-CCCHHHHH---HHHH------hCCCEEEecCCCCCcCcHHH-HHHHHHHCC------CEEE
Confidence 333334567789999886 55566654 4454 489999886421 122111 112233333 2233
Q ss_pred EEcCC--HHHHHHHHHhhcC
Q 039983 174 VSASN--AKELVQKLEDYVP 191 (220)
Q Consensus 174 ~~~~d--~ee~~~~l~~~~~ 191 (220)
.-.+| ++++.+.|++...
T Consensus 304 ~~~~~~~~~~l~~~i~~ll~ 323 (357)
T PRK00726 304 IPQSDLTPEKLAEKLLELLS 323 (357)
T ss_pred EEcccCCHHHHHHHHHHHHc
Confidence 33444 8999888887654
No 57
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=57.28 E-value=24 Score=32.97 Aligned_cols=84 Identities=20% Similarity=0.321 Sum_probs=52.1
Q ss_pred CeEEEcCCCcChhHHHHHHHHh--------------------cCCcEEEEeCCcccccccCCCCCceEeecCCHHHHHHH
Q 039983 44 LDLVYGGGSVGLMGLISEEVHR--------------------GGRHVLGIIPKALMKKELTGVTLGEVKPVDHMHQRKAE 103 (220)
Q Consensus 44 ~~lVtGGg~~GlM~ava~gA~~--------------------~gG~viGv~P~~~~~~e~~~~~~~~~~~~~~~~~Rk~~ 103 (220)
+.+-+|-|| |+.+--.+-+.+ .+|+|.||.-+.+.|.....-.-+.-.+..+|
T Consensus 141 FHiTWGTGP-gvl~pFvr~~re~~~~~~v~f~~RHrV~~l~~t~grvtGv~GdVLeps~v~RG~~SSR~~~GdF------ 213 (552)
T COG3573 141 FHITWGTGP-GVLEPFVRRLREAQRRGRVTFRFRHRVDGLTTTGGRVTGVRGDVLEPSDVERGQPSSREVVGDF------ 213 (552)
T ss_pred eEEeecCCc-chhhHHHHHHHHHHhCCceEEEeeeeccceEeeCCeEeeecccccCCCccccCCCccceeecce------
Confidence 457889999 999988887776 25677777554444332221111111222232
Q ss_pred HHHhCCeEEEecCCcccHHHHHHH-HHHHHhcc
Q 039983 104 MARNADCFIALPGGFGTLEELFEV-TTWSQLGI 135 (220)
Q Consensus 104 ~~~~sda~IvlpGG~GTL~El~~~-~t~~qlg~ 135 (220)
.-++.++||-.||+|--.|+.-- |--..+|.
T Consensus 214 -ef~A~aviv~SGGIGGnhelVRrnWP~eRlG~ 245 (552)
T COG3573 214 -EFSASAVIVASGGIGGNHELVRRNWPTERLGR 245 (552)
T ss_pred -EEeeeeEEEecCCcCCCHHHHHhcCchhhcCC
Confidence 23688999999999999997644 43344554
No 58
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=56.62 E-value=27 Score=29.20 Aligned_cols=81 Identities=14% Similarity=0.110 Sum_probs=53.6
Q ss_pred hCCeEEEecCCcccHHHHHHHHHHHH-------hccCCCcEEEEcCCCCchhH--HHHHHHHHHcCCCC-ccccCcEEEc
Q 039983 107 NADCFIALPGGFGTLEELFEVTTWSQ-------LGIHNKPVGLINVEGYYDPI--LNFIDKSIDEGFIY-PSQRSIIVSA 176 (220)
Q Consensus 107 ~sda~IvlpGG~GTL~El~~~~t~~q-------lg~~~kPIill~~~g~~~~l--~~~l~~~~~~g~i~-~~~~~~i~~~ 176 (220)
.+|++||.|=..+|+.-+..=++-.- .-..++|+++.-. ..|..- .+.++.+.+.|+.= +.....+.--
T Consensus 78 ~aD~~vIaPaTaNtlAKiA~GiaDnLlt~~a~~~L~~~~pvii~P~-~M~~~p~~~~Nl~~L~~~G~~vi~P~~g~~a~p 156 (185)
T PRK06029 78 GTDGMVIAPCSMKTLAKIAHGYSDNLITRAADVMLKERRRLVLCVR-ETPLHLGHLRNMTKLAEMGAIIMPPVPAFYHRP 156 (185)
T ss_pred hhCEEEEeeCCHhHHHHHHccccCcHHHHHHHHHHhcCCCEEEEec-cccCCHHHHHHHHHHHHCcCEEECCCcccccCC
Confidence 47999999999999988764322111 1125799999864 577642 34456677777532 3334556666
Q ss_pred CCHHHHHHHHHh
Q 039983 177 SNAKELVQKLED 188 (220)
Q Consensus 177 ~d~ee~~~~l~~ 188 (220)
.+.+++++++..
T Consensus 157 ~~~~~~~~~~v~ 168 (185)
T PRK06029 157 QTLEDMVDQTVG 168 (185)
T ss_pred CCHHHHHHHHHH
Confidence 899999988753
No 59
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=56.52 E-value=57 Score=29.77 Aligned_cols=65 Identities=20% Similarity=0.302 Sum_probs=40.3
Q ss_pred HHHHhCCeEEEecCCcccHHHHHHHHHHHHhccCCCcEEEEcCCCCchhHHHHHHHHHHcCCCCccccCcEEEcCCHHHH
Q 039983 103 EMARNADCFIALPGGFGTLEELFEVTTWSQLGIHNKPVGLINVEGYYDPILNFIDKSIDEGFIYPSQRSIIVSASNAKEL 182 (220)
Q Consensus 103 ~~~~~sda~IvlpGG~GTL~El~~~~t~~qlg~~~kPIill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~d~ee~ 182 (220)
.++..||.+| ||.|||. .|+.. .+.|.|-..+ |.+-..-.+ +.+. .+++.+.|++|+
T Consensus 244 ~Ll~~a~l~I---g~ggTMa--~EAA~------LGtPaIs~~~-g~~~~vd~~---L~~~--------Gll~~~~~~~ei 300 (335)
T PF04007_consen 244 DLLYYADLVI---GGGGTMA--REAAL------LGTPAISCFP-GKLLAVDKY---LIEK--------GLLYHSTDPDEI 300 (335)
T ss_pred HHHHhcCEEE---eCCcHHH--HHHHH------hCCCEEEecC-CcchhHHHH---HHHC--------CCeEecCCHHHH
Confidence 3556677665 5666775 45544 3889886543 333333333 3333 458889999999
Q ss_pred HHHHHhhc
Q 039983 183 VQKLEDYV 190 (220)
Q Consensus 183 ~~~l~~~~ 190 (220)
++++.+..
T Consensus 301 ~~~v~~~~ 308 (335)
T PF04007_consen 301 VEYVRKNL 308 (335)
T ss_pred HHHHHHhh
Confidence 99887654
No 60
>PRK11914 diacylglycerol kinase; Reviewed
Probab=56.48 E-value=1.4e+02 Score=26.23 Aligned_cols=17 Identities=24% Similarity=0.524 Sum_probs=9.7
Q ss_pred EEecCCcccHHHHHHHH
Q 039983 112 IALPGGFGTLEELFEVT 128 (220)
Q Consensus 112 IvlpGG~GTL~El~~~~ 128 (220)
|+.-||=||++|+...+
T Consensus 68 vvv~GGDGTi~evv~~l 84 (306)
T PRK11914 68 LVVVGGDGVISNALQVL 84 (306)
T ss_pred EEEECCchHHHHHhHHh
Confidence 44556666666665444
No 61
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=55.49 E-value=23 Score=28.54 Aligned_cols=38 Identities=16% Similarity=0.166 Sum_probs=27.7
Q ss_pred hhcCCCceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEE
Q 039983 6 EAKSRFKRVCVFCGSSPDYKYCYRKAAVDLGNELVSRGLDLVY 48 (220)
Q Consensus 6 ~~~~~~~~I~Vfgss~~~~~~~~~~~A~~lG~~lA~~g~~lVt 48 (220)
+.-++-++|+|.|-|.....+ +..+.+.|-++||.++=
T Consensus 11 ~iL~~~K~IAvVG~S~~P~r~-----sy~V~kyL~~~GY~ViP 48 (140)
T COG1832 11 EILKSAKTIAVVGASDKPDRP-----SYRVAKYLQQKGYRVIP 48 (140)
T ss_pred HHHHhCceEEEEecCCCCCcc-----HHHHHHHHHHCCCEEEe
Confidence 334556899999988754333 45678889999999873
No 62
>COG0549 ArcC Carbamate kinase [Amino acid transport and metabolism]
Probab=55.22 E-value=31 Score=31.16 Aligned_cols=60 Identities=22% Similarity=0.296 Sum_probs=33.4
Q ss_pred HHHHHHHHCCCeEEEcCCCcChhHHHHHHHHhcCCcEEEEeCCcccccccCCCCCceEeecCCHHHHHHHHHHhCCeEEE
Q 039983 34 DLGNELVSRGLDLVYGGGSVGLMGLISEEVHRGGRHVLGIIPKALMKKELTGVTLGEVKPVDHMHQRKAEMARNADCFIA 113 (220)
Q Consensus 34 ~lG~~lA~~g~~lVtGGg~~GlM~ava~gA~~~gG~viGv~P~~~~~~e~~~~~~~~~~~~~~~~~Rk~~~~~~sda~Iv 113 (220)
+.-+.|.++|+.+|+.||+ |+. +.+.++...|| +-++-+++..-+---.-.+|.+|+
T Consensus 175 ~~Ik~L~~~g~vVI~~GGG-GIP------Vv~~~~~~~GV----------------eAVIDKDlasalLA~~i~AD~liI 231 (312)
T COG0549 175 EAIKALLESGHVVIAAGGG-GIP------VVEEGAGLQGV----------------EAVIDKDLASALLAEQIDADLLII 231 (312)
T ss_pred HHHHHHHhCCCEEEEeCCC-Ccc------eEecCCCccee----------------eEEEccHHHHHHHHHHhcCCEEEE
Confidence 4445666777777776666 554 22222222222 445666775333333346899999
Q ss_pred ecC
Q 039983 114 LPG 116 (220)
Q Consensus 114 lpG 116 (220)
|-.
T Consensus 232 LTd 234 (312)
T COG0549 232 LTD 234 (312)
T ss_pred Eec
Confidence 876
No 63
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=55.11 E-value=7.8 Score=39.99 Aligned_cols=47 Identities=30% Similarity=0.437 Sum_probs=34.5
Q ss_pred HHHHHHHHHCCCeEEEcCCCcChhHHHHHHHHhc-----------CCcEEEEeCCccccc
Q 039983 33 VDLGNELVSRGLDLVYGGGSVGLMGLISEEVHRG-----------GRHVLGIIPKALMKK 81 (220)
Q Consensus 33 ~~lG~~lA~~g~~lVtGGg~~GlM~ava~gA~~~-----------gG~viGv~P~~~~~~ 81 (220)
.+|+|.|.-+-+.||.||| |.=+++.-|++.| ||.+||-.-+.++..
T Consensus 829 sRLAR~LtGnaIgLVLGGG--GARG~ahiGvl~ALeE~GIPvD~VGGTSIGafiGaLYA~ 886 (1158)
T KOG2968|consen 829 SRLARILTGNAIGLVLGGG--GARGAAHIGVLQALEEAGIPVDMVGGTSIGAFIGALYAE 886 (1158)
T ss_pred HHHHHHHhCCeEEEEecCc--chhhhhHHHHHHHHHHcCCCeeeeccccHHHhhhhhhhc
Confidence 3677788888889999887 6788888887773 677777655555433
No 64
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=54.44 E-value=27 Score=30.67 Aligned_cols=43 Identities=21% Similarity=0.427 Sum_probs=29.3
Q ss_pred HHHHHHHHHCCC-eEEEcCCCcChhHHHHHHHHhcCC---cEEEEeCC
Q 039983 33 VDLGNELVSRGL-DLVYGGGSVGLMGLISEEVHRGGR---HVLGIIPK 76 (220)
Q Consensus 33 ~~lG~~lA~~g~-~lVtGGg~~GlM~ava~gA~~~gG---~viGv~P~ 76 (220)
.++++.+++.++ .||.-||- |...++..|....+. ..+||+|.
T Consensus 42 ~~~a~~~~~~~~d~vv~~GGD-GTi~ev~ngl~~~~~~~~~~lgiiP~ 88 (293)
T TIGR03702 42 QRYVAEALALGVSTVIAGGGD-GTLREVATALAQIRDDAAPALGLLPL 88 (293)
T ss_pred HHHHHHHHHcCCCEEEEEcCC-hHHHHHHHHHHhhCCCCCCcEEEEcC
Confidence 445555555554 45566666 999999999986542 35999995
No 65
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=53.88 E-value=69 Score=26.62 Aligned_cols=64 Identities=27% Similarity=0.253 Sum_probs=34.1
Q ss_pred EEEcCCCcChhHHH-HHHHHhcCCcEEEEeCCcccccccCCCCCceEeec---CCHHHHHHHHHHhCCeEEEe
Q 039983 46 LVYGGGSVGLMGLI-SEEVHRGGRHVLGIIPKALMKKELTGVTLGEVKPV---DHMHQRKAEMARNADCFIAL 114 (220)
Q Consensus 46 lVtGGg~~GlM~av-a~gA~~~gG~viGv~P~~~~~~e~~~~~~~~~~~~---~~~~~Rk~~~~~~sda~Ivl 114 (220)
.+|=-.. |-|+.. ++.+...|..|+=|.-.... ..+...+.+.+ .+|.+.-......+|++|..
T Consensus 22 ~ItN~SS-G~~G~~lA~~~~~~Ga~V~li~g~~~~----~~p~~~~~i~v~sa~em~~~~~~~~~~~Di~I~a 89 (185)
T PF04127_consen 22 FITNRSS-GKMGAALAEEAARRGAEVTLIHGPSSL----PPPPGVKVIRVESAEEMLEAVKELLPSADIIIMA 89 (185)
T ss_dssp EEEES---SHHHHHHHHHHHHTT-EEEEEE-TTS--------TTEEEEE-SSHHHHHHHHHHHGGGGSEEEE-
T ss_pred EecCCCc-CHHHHHHHHHHHHCCCEEEEEecCccc----cccccceEEEecchhhhhhhhccccCcceeEEEe
Confidence 3443444 999865 77788889998888533211 11222344433 45566666666777887754
No 66
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=53.30 E-value=1.1e+02 Score=26.99 Aligned_cols=35 Identities=14% Similarity=0.318 Sum_probs=24.8
Q ss_pred hCCeEEEecCCcccHHHHHHHHHHHHhccCCCcEEEEc
Q 039983 107 NADCFIALPGGFGTLEELFEVTTWSQLGIHNKPVGLIN 144 (220)
Q Consensus 107 ~sda~IvlpGG~GTL~El~~~~t~~qlg~~~kPIill~ 144 (220)
..||++..-||+|+. ++..-+.+..+..++| ++++
T Consensus 62 ~i~aI~~~rGG~ga~-rlL~~ld~~~~~~~pK--~~iG 96 (282)
T cd07025 62 EIKAIWCARGGYGAN-RLLPYLDYDLIRANPK--IFVG 96 (282)
T ss_pred CCCEEEEcCCcCCHH-HhhhhCCHHHHhhCCe--EEEE
Confidence 468999999999996 4666666666654444 4553
No 67
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=53.01 E-value=1.3e+02 Score=26.88 Aligned_cols=33 Identities=18% Similarity=0.147 Sum_probs=24.2
Q ss_pred CCeEEEecCCcccHHHHHHHHHHHHhccCCCcEE
Q 039983 108 ADCFIALPGGFGTLEELFEVTTWSQLGIHNKPVG 141 (220)
Q Consensus 108 sda~IvlpGG~GTL~El~~~~t~~qlg~~~kPIi 141 (220)
.||++..-||+|+. ++..-+.+..+..++|+++
T Consensus 67 i~aI~~~rGG~g~~-rlL~~lD~~~i~~~PK~fi 99 (308)
T cd07062 67 IKAIIPTIGGDDSN-ELLPYLDYELIKKNPKIFI 99 (308)
T ss_pred CCEEEECCcccCHh-hhhhhcCHHHHhhCCCEEE
Confidence 58999999999996 4666666666665555443
No 68
>TIGR00519 asnASE_I L-asparaginases, type I. Two related families of asparaginase are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity secreted enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type I of E. coli. Archaeal putative asparaginases are of this type but contain an extra ~ 80 residues in a conserved N-terminal region. These archaeal homologs are included in this model.
Probab=52.44 E-value=37 Score=30.92 Aligned_cols=49 Identities=20% Similarity=0.213 Sum_probs=35.0
Q ss_pred HhCCeEEEecCCcccHHHHHHHHHHHHhccCCCcEEEEcC-----CCCchhHHHHHH
Q 039983 106 RNADCFIALPGGFGTLEELFEVTTWSQLGIHNKPVGLINV-----EGYYDPILNFID 157 (220)
Q Consensus 106 ~~sda~IvlpGG~GTL~El~~~~t~~qlg~~~kPIill~~-----~g~~~~l~~~l~ 157 (220)
+..|.|||+-| .-||+|-..++.+.-- .+|||||-+. .--.|...+++.
T Consensus 76 ~~~dG~VVtHG-TDTme~TA~~Ls~~l~--~~kPVVlTGsmrp~~~~~sDg~~NL~~ 129 (336)
T TIGR00519 76 DDYDGFVITHG-TDTMAYTAAALSFMLE--TPKPVVFTGAQRSSDRPSSDAALNLLC 129 (336)
T ss_pred hcCCeEEEccC-CchHHHHHHHHHHHcC--CCCCEEEECCCCCCCCcCcchHHHHHH
Confidence 35899999986 8999999888776433 3899999864 224555555554
No 69
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=52.41 E-value=76 Score=27.68 Aligned_cols=72 Identities=15% Similarity=0.231 Sum_probs=46.4
Q ss_pred HHHHHHHHhCCeEEEec-CCcccHHHHHHHHHHHHhccCCCcEEEEcCCCCchhHHHHHHHHHHcCCCCccccCcEEEcC
Q 039983 99 QRKAEMARNADCFIALP-GGFGTLEELFEVTTWSQLGIHNKPVGLINVEGYYDPILNFIDKSIDEGFIYPSQRSIIVSAS 177 (220)
Q Consensus 99 ~Rk~~~~~~sda~Ivlp-GG~GTL~El~~~~t~~qlg~~~kPIill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~ 177 (220)
+....++..||++|+.. -|+|.. +.|++. .++||+..+..+ +..+ +.......++-.+
T Consensus 253 ~~~~~~~~~ad~~v~ps~e~~g~~--~~Eama------~G~Pvi~~~~~~-~~e~------------i~~~~~G~~~~~~ 311 (351)
T cd03804 253 EELRDLYARARAFLFPAEEDFGIV--PVEAMA------SGTPVIAYGKGG-ALET------------VIDGVTGILFEEQ 311 (351)
T ss_pred HHHHHHHHhCCEEEECCcCCCCch--HHHHHH------cCCCEEEeCCCC-Ccce------------eeCCCCEEEeCCC
Confidence 34556778999888642 567766 467776 589999987644 2221 2222234444467
Q ss_pred CHHHHHHHHHhhcC
Q 039983 178 NAKELVQKLEDYVP 191 (220)
Q Consensus 178 d~ee~~~~l~~~~~ 191 (220)
|++++.+.|.....
T Consensus 312 ~~~~la~~i~~l~~ 325 (351)
T cd03804 312 TVESLAAAVERFEK 325 (351)
T ss_pred CHHHHHHHHHHHHh
Confidence 89998888877653
No 70
>PRK00861 putative lipid kinase; Reviewed
Probab=52.30 E-value=27 Score=30.70 Aligned_cols=43 Identities=28% Similarity=0.513 Sum_probs=30.7
Q ss_pred HHHHHHHHHCCC-eEEEcCCCcChhHHHHHHHHhcCCcEEEEeCCc
Q 039983 33 VDLGNELVSRGL-DLVYGGGSVGLMGLISEEVHRGGRHVLGIIPKA 77 (220)
Q Consensus 33 ~~lG~~lA~~g~-~lVtGGg~~GlM~ava~gA~~~gG~viGv~P~~ 77 (220)
.++++..++.++ .||..||- |-...+..+.... +..+||+|..
T Consensus 47 ~~~a~~~~~~~~d~vv~~GGD-GTl~evv~~l~~~-~~~lgviP~G 90 (300)
T PRK00861 47 DQLAQEAIERGAELIIASGGD-GTLSAVAGALIGT-DIPLGIIPRG 90 (300)
T ss_pred HHHHHHHHhcCCCEEEEECCh-HHHHHHHHHHhcC-CCcEEEEcCC
Confidence 445555555554 45677776 9999999998765 4679999963
No 71
>PRK11914 diacylglycerol kinase; Reviewed
Probab=51.67 E-value=32 Score=30.33 Aligned_cols=44 Identities=30% Similarity=0.406 Sum_probs=30.0
Q ss_pred HHHHHHHHHHCCC-eEEEcCCCcChhHHHHHHHHhcCCcEEEEeCCc
Q 039983 32 AVDLGNELVSRGL-DLVYGGGSVGLMGLISEEVHRGGRHVLGIIPKA 77 (220)
Q Consensus 32 A~~lG~~lA~~g~-~lVtGGg~~GlM~ava~gA~~~gG~viGv~P~~ 77 (220)
+.++++.+++.++ .||..||- |...+++.+.... +..+||+|..
T Consensus 53 ~~~~a~~~~~~~~d~vvv~GGD-GTi~evv~~l~~~-~~~lgiiP~G 97 (306)
T PRK11914 53 ARHLVAAALAKGTDALVVVGGD-GVISNALQVLAGT-DIPLGIIPAG 97 (306)
T ss_pred HHHHHHHHHhcCCCEEEEECCc-hHHHHHhHHhccC-CCcEEEEeCC
Confidence 4555555555654 35666776 9999999887643 4679999953
No 72
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=50.95 E-value=1.7e+02 Score=25.58 Aligned_cols=68 Identities=16% Similarity=0.213 Sum_probs=39.4
Q ss_pred HHHHHHHHhCCeEEEecCCcccHHHHHHHHHHHHhccCCCcEEEEcCCCCchhHHHHHHHHHHcCCCCccccCcEEEcCC
Q 039983 99 QRKAEMARNADCFIALPGGFGTLEELFEVTTWSQLGIHNKPVGLINVEGYYDPILNFIDKSIDEGFIYPSQRSIIVSASN 178 (220)
Q Consensus 99 ~Rk~~~~~~sda~IvlpGG~GTL~El~~~~t~~qlg~~~kPIill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~d 178 (220)
..-..+...||++|.=+| |..+|. +. .++|+++++..+-+..+ .+.|. .+.+.+|
T Consensus 269 ~~~~~l~~~ad~~v~~Sg--gi~~Ea---~~------~g~PvI~~~~~~~~~~~-------~~~g~-------~~~~~~~ 323 (363)
T cd03786 269 LYFLLLLKNADLVLTDSG--GIQEEA---SF------LGVPVLNLRDRTERPET-------VESGT-------NVLVGTD 323 (363)
T ss_pred HHHHHHHHcCcEEEEcCc--cHHhhh---hh------cCCCEEeeCCCCccchh-------hheee-------EEecCCC
Confidence 344456677999986555 444333 32 47999998643322221 12221 1233347
Q ss_pred HHHHHHHHHhhcC
Q 039983 179 AKELVQKLEDYVP 191 (220)
Q Consensus 179 ~ee~~~~l~~~~~ 191 (220)
++++.+.+.+...
T Consensus 324 ~~~i~~~i~~ll~ 336 (363)
T cd03786 324 PEAILAAIEKLLS 336 (363)
T ss_pred HHHHHHHHHHHhc
Confidence 8999888887654
No 73
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=50.87 E-value=93 Score=25.81 Aligned_cols=72 Identities=18% Similarity=0.251 Sum_probs=42.0
Q ss_pred HHHHHHHHhCCeEEEecC--CcccHHHHHHHHHHHHhccCCCcEEEEcCCCCchhHHHHHHHHHHcCCCCccccCcEEEc
Q 039983 99 QRKAEMARNADCFIALPG--GFGTLEELFEVTTWSQLGIHNKPVGLINVEGYYDPILNFIDKSIDEGFIYPSQRSIIVSA 176 (220)
Q Consensus 99 ~Rk~~~~~~sda~IvlpG--G~GTL~El~~~~t~~qlg~~~kPIill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~ 176 (220)
+....++..||++|.-.. |+|+- ++|++. .++||+..+..+....+. +......++-.
T Consensus 244 ~~~~~~~~~ad~~i~ps~~e~~~~~--~~Ea~a------~G~Pvi~~~~~~~~~~~~------------~~~~~g~~~~~ 303 (348)
T cd03820 244 KNIEEYYAKASIFVLTSRFEGFPMV--LLEAMA------FGLPVISFDCPTGPSEII------------EDGVNGLLVPN 303 (348)
T ss_pred chHHHHHHhCCEEEeCccccccCHH--HHHHHH------cCCCEEEecCCCchHhhh------------ccCcceEEeCC
Confidence 344566678998776432 34433 667775 589999876433332221 11112333334
Q ss_pred CCHHHHHHHHHhhc
Q 039983 177 SNAKELVQKLEDYV 190 (220)
Q Consensus 177 ~d~ee~~~~l~~~~ 190 (220)
.|++++.+.|.+..
T Consensus 304 ~~~~~~~~~i~~ll 317 (348)
T cd03820 304 GDVEALAEALLRLM 317 (348)
T ss_pred CCHHHHHHHHHHHH
Confidence 57788888888874
No 74
>PRK08105 flavodoxin; Provisional
Probab=50.75 E-value=32 Score=27.31 Aligned_cols=34 Identities=18% Similarity=0.271 Sum_probs=25.6
Q ss_pred CceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEE
Q 039983 11 FKRVCVFCGSSPDYKYCYRKAAVDLGNELVSRGLDLV 47 (220)
Q Consensus 11 ~~~I~Vfgss~~~~~~~~~~~A~~lG~~lA~~g~~lV 47 (220)
|.+|.|+-+|..++. .+.|++|++.+.+.|+.+.
T Consensus 1 m~~i~I~YgS~tGnt---e~~A~~l~~~l~~~g~~~~ 34 (149)
T PRK08105 1 MAKVGIFVGTVYGNA---LLVAEEAEAILTAQGHEVT 34 (149)
T ss_pred CCeEEEEEEcCchHH---HHHHHHHHHHHHhCCCceE
Confidence 457889988887743 4567899999988887754
No 75
>PRK12359 flavodoxin FldB; Provisional
Probab=50.55 E-value=41 Score=27.67 Aligned_cols=36 Identities=22% Similarity=0.332 Sum_probs=15.7
Q ss_pred ceEEEEcCCCC-CCCHHHHHHHHHHHHHHHHCCCeEE
Q 039983 12 KRVCVFCGSSP-DYKYCYRKAAVDLGNELVSRGLDLV 47 (220)
Q Consensus 12 ~~I~Vfgss~~-~~~~~~~~~A~~lG~~lA~~g~~lV 47 (220)
++|+|||.... +..+.|...+..|-+.|.+.|..+|
T Consensus 80 K~vAlFG~Gd~~~y~~~f~~a~~~l~~~l~~~Ga~iv 116 (172)
T PRK12359 80 KIVALYGMGDQLGYGEWFLDALGMLHDKLAPKGVKFV 116 (172)
T ss_pred CEEEEEeCCCCccchHHHHHHHHHHHHHHHhCCCeEE
Confidence 44555553221 1223344444455555555555444
No 76
>PRK13054 lipid kinase; Reviewed
Probab=50.49 E-value=35 Score=30.10 Aligned_cols=44 Identities=23% Similarity=0.462 Sum_probs=28.5
Q ss_pred HHHHHHHHHCCC-eEEEcCCCcChhHHHHHHHHhcC-C--cEEEEeCCc
Q 039983 33 VDLGNELVSRGL-DLVYGGGSVGLMGLISEEVHRGG-R--HVLGIIPKA 77 (220)
Q Consensus 33 ~~lG~~lA~~g~-~lVtGGg~~GlM~ava~gA~~~g-G--~viGv~P~~ 77 (220)
.++.+.+++.++ .||..||- |-...++.+..... + ..+||+|..
T Consensus 46 ~~~a~~~~~~~~d~vvv~GGD-GTl~evv~~l~~~~~~~~~~lgiiP~G 93 (300)
T PRK13054 46 ARYVEEALALGVATVIAGGGD-GTINEVATALAQLEGDARPALGILPLG 93 (300)
T ss_pred HHHHHHHHHcCCCEEEEECCc-cHHHHHHHHHHhhccCCCCcEEEEeCC
Confidence 344444444554 45566776 98888888887642 2 469999953
No 77
>PTZ00032 60S ribosomal protein L18; Provisional
Probab=50.18 E-value=31 Score=29.49 Aligned_cols=40 Identities=25% Similarity=0.346 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHH----CCCeEE-E--cCCC-cChhHHHHHHHHhcCC
Q 039983 29 RKAAVDLGNELVS----RGLDLV-Y--GGGS-VGLMGLISEEVHRGGR 68 (220)
Q Consensus 29 ~~~A~~lG~~lA~----~g~~lV-t--GGg~-~GlM~ava~gA~~~gG 68 (220)
.+.|+.+|+.||+ .|+.=| . ||.. -|-+.|.+++|+++|-
T Consensus 162 ieaA~~VGk~IAerAl~kGI~kVvFDRgGy~YHGRVkALAdaARe~GL 209 (211)
T PTZ00032 162 IKAAYELGKLIGRKALSKGISKVRFDRAHYKYAGKVEALAEGARAVGL 209 (211)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEeCCCCeehhHHHHHHHHHHHcCC
Confidence 4678888888887 465533 2 5543 4899999999999873
No 78
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=49.73 E-value=83 Score=26.93 Aligned_cols=73 Identities=18% Similarity=0.274 Sum_probs=45.4
Q ss_pred HHHHHHHHhCCeEEEec----CCcccHHHHHHHHHHHHhccCCCcEEEEcCCCCchhHHHHHHHHHHcCCCCccccCcEE
Q 039983 99 QRKAEMARNADCFIALP----GGFGTLEELFEVTTWSQLGIHNKPVGLINVEGYYDPILNFIDKSIDEGFIYPSQRSIIV 174 (220)
Q Consensus 99 ~Rk~~~~~~sda~Ivlp----GG~GTL~El~~~~t~~qlg~~~kPIill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~ 174 (220)
+....+...||++|... .|+|.- +.|++. .++||+.-+..+..+.+.. ......++
T Consensus 255 ~~~~~~~~~ad~~i~ps~~~~e~~g~~--~~Ea~~------~g~Pvi~~~~~~~~~~i~~------------~~~~g~~~ 314 (357)
T cd03795 255 EEKAALLAACDVFVFPSVERSEAFGIV--LLEAMA------FGKPVISTEIGTGGSYVNL------------HGVTGLVV 314 (357)
T ss_pred HHHHHHHHhCCEEEeCCcccccccchH--HHHHHH------cCCCEEecCCCCchhHHhh------------CCCceEEe
Confidence 44556778899988652 466643 566675 5899998775444332211 11233445
Q ss_pred EcCCHHHHHHHHHhhcC
Q 039983 175 SASNAKELVQKLEDYVP 191 (220)
Q Consensus 175 ~~~d~ee~~~~l~~~~~ 191 (220)
-.+|++++.+.|.+...
T Consensus 315 ~~~d~~~~~~~i~~l~~ 331 (357)
T cd03795 315 PPGDPAALAEAIRRLLE 331 (357)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 55789999988887653
No 79
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=49.72 E-value=66 Score=30.33 Aligned_cols=104 Identities=21% Similarity=0.267 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHH-----CCCeEEEcCCCcC---hhHHHHHHHHhcCC--cEEEEeCCcccccccCCCCCceEeecCCHHH
Q 039983 30 KAAVDLGNELVS-----RGLDLVYGGGSVG---LMGLISEEVHRGGR--HVLGIIPKALMKKELTGVTLGEVKPVDHMHQ 99 (220)
Q Consensus 30 ~~A~~lG~~lA~-----~g~~lVtGGg~~G---lM~ava~gA~~~gG--~viGv~P~~~~~~e~~~~~~~~~~~~~~~~~ 99 (220)
+.|..++..+|+ .+..++|||-+.| ||.|+...+.+.+- +++.+....+. +.+..-+.-..|..
T Consensus 96 ~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~------~~~v~a~~~~~~~~ 169 (408)
T COG0593 96 RLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFT------NDFVKALRDNEMEK 169 (408)
T ss_pred HHHHHHHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHH------HHHHHHHHhhhHHH
Confidence 466777788877 4566788775555 99999999999876 55655332110 00000111123322
Q ss_pred HHHHHHHhCCeEEE-----ecCCcccHHHHHHHHHHHHhccCCCcEEEE
Q 039983 100 RKAEMARNADCFIA-----LPGGFGTLEELFEVTTWSQLGIHNKPVGLI 143 (220)
Q Consensus 100 Rk~~~~~~sda~Iv-----lpGG~GTL~El~~~~t~~qlg~~~kPIill 143 (220)
=|... +.|++++ +.|.-.|.+|+|.++.. +...+|-|++-
T Consensus 170 Fk~~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~--l~~~~kqIvlt 214 (408)
T COG0593 170 FKEKY--SLDLLLIDDIQFLAGKERTQEEFFHTFNA--LLENGKQIVLT 214 (408)
T ss_pred HHHhh--ccCeeeechHhHhcCChhHHHHHHHHHHH--HHhcCCEEEEE
Confidence 22222 6777664 67888999999988754 33345545443
No 80
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=49.60 E-value=1e+02 Score=27.39 Aligned_cols=62 Identities=27% Similarity=0.280 Sum_probs=38.4
Q ss_pred CCCceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCC------------------------------eEEEcCCCcChhHH
Q 039983 9 SRFKRVCVFCGSSPDYKYCYRKAAVDLGNELVSRGL------------------------------DLVYGGGSVGLMGL 58 (220)
Q Consensus 9 ~~~~~I~Vfgss~~~~~~~~~~~A~~lG~~lA~~g~------------------------------~lVtGGg~~GlM~a 58 (220)
+.+++|+|+.-.. .+...+.+.++.++|.++|+ .+|+-||- |.|--
T Consensus 3 ~~~~~v~iv~~~~---~~~~~e~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~GGD-Gt~l~ 78 (291)
T PRK02155 3 SQFKTVALIGRYQ---TPGIAEPLESLAAFLAKRGFEVVFEADTARNIGLTGYPALTPEEIGARADLAVVLGGD-GTMLG 78 (291)
T ss_pred CcCCEEEEEecCC---CHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccChhHhccCCCEEEEECCc-HHHHH
Confidence 4467799996543 34455566666666644432 24455666 77777
Q ss_pred HHHHHHhcCCcEEEEe
Q 039983 59 ISEEVHRGGRHVLGII 74 (220)
Q Consensus 59 va~gA~~~gG~viGv~ 74 (220)
+++.....+-.++||-
T Consensus 79 ~~~~~~~~~~pilGIn 94 (291)
T PRK02155 79 IGRQLAPYGVPLIGIN 94 (291)
T ss_pred HHHHhcCCCCCEEEEc
Confidence 7666655666788874
No 81
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=49.49 E-value=57 Score=26.98 Aligned_cols=88 Identities=16% Similarity=0.220 Sum_probs=55.2
Q ss_pred HHHhCCeEEEecCCcccHHHHHHHHHHHH-----h-ccCCCcEEEEcC--CCCchh--HHHHHHHHHHcCC--CCccccC
Q 039983 104 MARNADCFIALPGGFGTLEELFEVTTWSQ-----L-GIHNKPVGLINV--EGYYDP--ILNFIDKSIDEGF--IYPSQRS 171 (220)
Q Consensus 104 ~~~~sda~IvlpGG~GTL~El~~~~t~~q-----l-g~~~kPIill~~--~g~~~~--l~~~l~~~~~~g~--i~~~~~~ 171 (220)
+...+|++||.|=..+|+.-+..=++-.. + -+.++|+++.-. ...|.. ..+.++++.+.|. +++....
T Consensus 74 l~~~aD~~vIaPaTantlakiA~GiaDnllt~~~~a~~~~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~~G~~vi~p~~g~ 153 (182)
T PRK07313 74 LAKRADLFLVAPATANTIAKLAHGIADDLVTSVALALPATTPKLIAPAMNTKMYENPATQRNLKTLKEDGVQEIEPKEGL 153 (182)
T ss_pred cccccCEEEEeeCCHhHHHHHHccccCcHHHHHHHHcCCCCCEEEEECCCHHHhcCHHHHHHHHHHHHCCCEEECCCCCc
Confidence 44578999999999999987754322111 1 124799998742 246664 3344566767664 3333111
Q ss_pred ------cEEEcCCHHHHHHHHHhhcC
Q 039983 172 ------IIVSASNAKELVQKLEDYVP 191 (220)
Q Consensus 172 ------~i~~~~d~ee~~~~l~~~~~ 191 (220)
-..--.+++++++++.++..
T Consensus 154 la~~~~g~g~~~~~~~i~~~v~~~~~ 179 (182)
T PRK07313 154 LACGDEGYGALADIETILETIENTLK 179 (182)
T ss_pred cccCCccCCCCCCHHHHHHHHHHHhc
Confidence 13456789999999988654
No 82
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=49.21 E-value=75 Score=24.86 Aligned_cols=44 Identities=18% Similarity=0.208 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHCCCeEEEcCCCcChhHHHHHHHHhcCCcEEEEe
Q 039983 30 KAAVDLGNELVSRGLDLVYGGGSVGLMGLISEEVHRGGRHVLGII 74 (220)
Q Consensus 30 ~~A~~lG~~lA~~g~~lVtGGg~~GlM~ava~gA~~~gG~viGv~ 74 (220)
.-+.-+...|...||.+++-|.- =-.+.+.+.|.+.+..+||+.
T Consensus 17 ~g~~iv~~~l~~~GfeVi~lg~~-~s~e~~v~aa~e~~adii~iS 60 (132)
T TIGR00640 17 RGAKVIATAYADLGFDVDVGPLF-QTPEEIARQAVEADVHVVGVS 60 (132)
T ss_pred HHHHHHHHHHHhCCcEEEECCCC-CCHHHHHHHHHHcCCCEEEEc
Confidence 34455666788899999998887 667888999999999999993
No 83
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=48.80 E-value=1.1e+02 Score=27.19 Aligned_cols=73 Identities=19% Similarity=0.373 Sum_probs=40.6
Q ss_pred HHHHHHHCCCeEEE---cCCC-cChhHHHHHHHHhcCCcEEEEeCCcccccccCCCCCceEeecCCHHHHHHHHHHhCCe
Q 039983 35 LGNELVSRGLDLVY---GGGS-VGLMGLISEEVHRGGRHVLGIIPKALMKKELTGVTLGEVKPVDHMHQRKAEMARNADC 110 (220)
Q Consensus 35 lG~~lA~~g~~lVt---GGg~-~GlM~ava~gA~~~gG~viGv~P~~~~~~e~~~~~~~~~~~~~~~~~Rk~~~~~~sda 110 (220)
+-+.|-..+..+|+ |||. +|.--.+++-+.+.|-.+++|.+.-+. .|.. ....+-...-..|.+.+|+
T Consensus 78 I~~~l~~~d~v~i~aglGGGTGSG~ap~ia~~a~e~g~~~~~vvt~Pf~-~Eg~-------~~~~nA~~~l~~L~~~~d~ 149 (304)
T cd02201 78 IKEALEGADMVFITAGMGGGTGTGAAPVIAKIAKEMGALTVAVVTKPFS-FEGK-------KRMRQAEEGLEELRKHVDT 149 (304)
T ss_pred HHHHHhCCCEEEEeeccCCCcchhHHHHHHHHHHHcCCCEEEEEeCCcc-ccch-------hHHHHHHHHHHHHHHhCCE
Confidence 33444445666665 4443 466666778888888888888642110 1110 1111112344556677888
Q ss_pred EEEec
Q 039983 111 FIALP 115 (220)
Q Consensus 111 ~Ivlp 115 (220)
+|+++
T Consensus 150 ~ivid 154 (304)
T cd02201 150 LIVIP 154 (304)
T ss_pred EEEEe
Confidence 88876
No 84
>PRK13055 putative lipid kinase; Reviewed
Probab=48.50 E-value=37 Score=30.55 Aligned_cols=44 Identities=18% Similarity=0.343 Sum_probs=29.9
Q ss_pred HHHHHHHHHCCC-eEEEcCCCcChhHHHHHHHHhcC-CcEEEEeCCc
Q 039983 33 VDLGNELVSRGL-DLVYGGGSVGLMGLISEEVHRGG-RHVLGIIPKA 77 (220)
Q Consensus 33 ~~lG~~lA~~g~-~lVtGGg~~GlM~ava~gA~~~g-G~viGv~P~~ 77 (220)
.++.+.+++.++ .||..||- |-+.++..+....+ ...+||+|..
T Consensus 49 ~~~~~~~~~~~~d~vvv~GGD-GTl~evvngl~~~~~~~~LgiiP~G 94 (334)
T PRK13055 49 KNEAKRAAEAGFDLIIAAGGD-GTINEVVNGIAPLEKRPKMAIIPAG 94 (334)
T ss_pred HHHHHHHhhcCCCEEEEECCC-CHHHHHHHHHhhcCCCCcEEEECCC
Confidence 344444444554 45566776 99999999988654 4569999953
No 85
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=48.47 E-value=21 Score=30.82 Aligned_cols=38 Identities=24% Similarity=0.475 Sum_probs=29.6
Q ss_pred HHHHHhCCeEEEecCCcccHHHHHHHHHHHHhccCCCcEEEEcCCCCchh
Q 039983 102 AEMARNADCFIALPGGFGTLEELFEVTTWSQLGIHNKPVGLINVEGYYDP 151 (220)
Q Consensus 102 ~~~~~~sda~IvlpGG~GTL~El~~~~t~~qlg~~~kPIill~~~g~~~~ 151 (220)
.-+++.||++|.+.+..| +|++- ++|||++++. .||+.
T Consensus 194 ~~Ll~~s~~VvtinStvG-----lEAll------~gkpVi~~G~-~~Y~~ 231 (269)
T PF05159_consen 194 YELLEQSDAVVTINSTVG-----LEALL------HGKPVIVFGR-AFYAG 231 (269)
T ss_pred HHHHHhCCEEEEECCHHH-----HHHHH------cCCceEEecC-cccCC
Confidence 367899999999999877 45553 5999999975 46664
No 86
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=48.22 E-value=1.6e+02 Score=24.38 Aligned_cols=121 Identities=20% Similarity=0.228 Sum_probs=60.7
Q ss_pred CceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCe---EEEcCCCcChhHHHHHHHHhcCCcEE-EEeCCcccccccCCC
Q 039983 11 FKRVCVFCGSSPDYKYCYRKAAVDLGNELVSRGLD---LVYGGGSVGLMGLISEEVHRGGRHVL-GIIPKALMKKELTGV 86 (220)
Q Consensus 11 ~~~I~Vfgss~~~~~~~~~~~A~~lG~~lA~~g~~---lVtGGg~~GlM~ava~gA~~~gG~vi-Gv~P~~~~~~e~~~~ 86 (220)
++.+-|-+|+..=.+=.-.-.+.++-+.|-++|++ |=.|=|..+.-+-...+. ..+|.+| |+ +
T Consensus 3 ~~~vFVTVGtT~Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~~~~~d~~~~~~-k~~gl~id~y--~---------- 69 (170)
T KOG3349|consen 3 LMTVFVTVGTTSFDDLISCVLSEEFLQELQKRGFTKLIIQIGRGQPFFGDPIDLIR-KNGGLTIDGY--D---------- 69 (170)
T ss_pred ceEEEEEeccccHHHHHHHHcCHHHHHHHHHcCccEEEEEecCCccCCCCHHHhhc-ccCCeEEEEE--e----------
Confidence 35566666665421122223356677788888887 336666424444433333 3344332 22 0
Q ss_pred CCceEeecCCHHHHHHHHHHhCCeEEEecCCcccHHHHHHHHHHHHhccCCCcEEEE-cCCCCchhHHHHHHHHHHcCC
Q 039983 87 TLGEVKPVDHMHQRKAEMARNADCFIALPGGFGTLEELFEVTTWSQLGIHNKPVGLI-NVEGYYDPILNFIDKSIDEGF 164 (220)
Q Consensus 87 ~~~~~~~~~~~~~Rk~~~~~~sda~IvlpGG~GTL~El~~~~t~~qlg~~~kPIill-~~~g~~~~l~~~l~~~~~~g~ 164 (220)
..+++ +.. ++.||. |+=-+|.||.- +++. .+||.+++ |-+=+=++=.++.+.+.++|+
T Consensus 70 ------f~psl---~e~-I~~Adl-VIsHAGaGS~l---etL~------l~KPlivVvNd~LMDNHQ~ELA~qL~~egy 128 (170)
T KOG3349|consen 70 ------FSPSL---TED-IRSADL-VISHAGAGSCL---ETLR------LGKPLIVVVNDSLMDNHQLELAKQLAEEGY 128 (170)
T ss_pred ------cCccH---HHH-HhhccE-EEecCCcchHH---HHHH------cCCCEEEEeChHhhhhHHHHHHHHHHhcCc
Confidence 01112 112 233443 44568899964 4454 47998876 422122233344456777666
No 87
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=47.78 E-value=1.9e+02 Score=25.56 Aligned_cols=30 Identities=20% Similarity=0.224 Sum_probs=20.1
Q ss_pred CCeEEEcCCCcChhHHHHHHHHhcCC-cEEEEe
Q 039983 43 GLDLVYGGGSVGLMGLISEEVHRGGR-HVLGII 74 (220)
Q Consensus 43 g~~lVtGGg~~GlM~ava~gA~~~gG-~viGv~ 74 (220)
...+|+|+|+.|+|-+ .-|+..|. +++.+.
T Consensus 171 ~~VlV~G~G~vG~~ai--qlak~~G~~~Vi~~~ 201 (343)
T PRK09880 171 KRVFVSGVGPIGCLIV--AAVKTLGAAEIVCAD 201 (343)
T ss_pred CEEEEECCCHHHHHHH--HHHHHcCCcEEEEEe
Confidence 4568888877777643 56667776 566663
No 88
>PF09152 DUF1937: Domain of unknown function (DUF1937); InterPro: IPR015235 This entry is represented by Bacteriophage N15, Gp57. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a set of hypothetical bacterial and phage proteins whose exact function has not, as yet, been described. ; PDB: 1T1J_A.
Probab=47.75 E-value=22 Score=27.75 Aligned_cols=39 Identities=18% Similarity=0.175 Sum_probs=26.8
Q ss_pred HHHHHHHHhCCeEEEec-----CCcccHHHHHHHHHHHHhccCCCcEEEE
Q 039983 99 QRKAEMARNADCFIALP-----GGFGTLEELFEVTTWSQLGIHNKPVGLI 143 (220)
Q Consensus 99 ~Rk~~~~~~sda~Ivlp-----GG~GTL~El~~~~t~~qlg~~~kPIill 143 (220)
.=.+.|++.+|++|++. =+.|+.-|+-.+.+ +++||.++
T Consensus 71 ~~d~~~L~~c~~lvV~~i~GW~~S~Gi~~Ei~~a~~------~~~~V~~~ 114 (116)
T PF09152_consen 71 DWDRPFLDACDELVVLDIPGWDDSEGIWAEIEAAEE------MGMPVFLY 114 (116)
T ss_dssp HHHHHHHHH-SEEEE---TTGGG-HHHHHHHHHHHH------TT-EEEEH
T ss_pred HHhHHHHHhcceeEEecCCCccccccHHHHHHHHHH------cCCeEEEe
Confidence 34567889999999995 46789999887776 58999875
No 89
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=47.37 E-value=65 Score=26.94 Aligned_cols=69 Identities=22% Similarity=0.314 Sum_probs=40.4
Q ss_pred HHHHhCCeEEEecCCcccHHHHHHHHHHHHhccCCCcEEEEcCCCCchhHHHHHHHHHHcCCCCccccCcEEEcCCHHHH
Q 039983 103 EMARNADCFIALPGGFGTLEELFEVTTWSQLGIHNKPVGLINVEGYYDPILNFIDKSIDEGFIYPSQRSIIVSASNAKEL 182 (220)
Q Consensus 103 ~~~~~sda~IvlpGG~GTL~El~~~~t~~qlg~~~kPIill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~d~ee~ 182 (220)
.+...||++|.-...-|.-.=+.|++. .++||+.-+..+. ..++ .......++-.+|++++
T Consensus 259 ~~~~~adi~i~ps~~e~~~~~~~Ea~~------~G~Pvi~s~~~~~-~~~i------------~~~~~g~~~~~~~~~~~ 319 (359)
T cd03808 259 ELLAAADVFVLPSYREGLPRVLLEAMA------MGRPVIATDVPGC-REAV------------IDGVNGFLVPPGDAEAL 319 (359)
T ss_pred HHHHhccEEEecCcccCcchHHHHHHH------cCCCEEEecCCCc-hhhh------------hcCcceEEECCCCHHHH
Confidence 556789987764432222223667775 5899998765432 2221 11123344455689999
Q ss_pred HHHHHhhc
Q 039983 183 VQKLEDYV 190 (220)
Q Consensus 183 ~~~l~~~~ 190 (220)
.+.+.+..
T Consensus 320 ~~~i~~l~ 327 (359)
T cd03808 320 ADAIERLI 327 (359)
T ss_pred HHHHHHHH
Confidence 88888754
No 90
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=47.19 E-value=1.1e+02 Score=26.37 Aligned_cols=71 Identities=18% Similarity=0.250 Sum_probs=42.8
Q ss_pred HHHHHHHhCCeEEEec--CCcccHHHHHHHHHHHHhccCCCcEEEEcCCCCchhHHHHHHHHHHcCCCCccccCcEEEcC
Q 039983 100 RKAEMARNADCFIALP--GGFGTLEELFEVTTWSQLGIHNKPVGLINVEGYYDPILNFIDKSIDEGFIYPSQRSIIVSAS 177 (220)
Q Consensus 100 Rk~~~~~~sda~Ivlp--GG~GTL~El~~~~t~~qlg~~~kPIill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~ 177 (220)
....+...||++|.-. .|+|.- +.|++. .++|||..+..++- .+ +.......+.-..
T Consensus 257 ~~~~~~~~ad~~l~ps~~e~~g~~--~~Eam~------~g~PvI~~~~~~~~-e~------------~~~~~~g~~~~~~ 315 (365)
T cd03825 257 SLALIYSAADVFVVPSLQENFPNT--AIEALA------CGTPVVAFDVGGIP-DI------------VDHGVTGYLAKPG 315 (365)
T ss_pred HHHHHHHhCCEEEeccccccccHH--HHHHHh------cCCCEEEecCCCCh-hh------------eeCCCceEEeCCC
Confidence 3445778899987743 344432 566775 58999988764432 21 1111223344455
Q ss_pred CHHHHHHHHHhhcC
Q 039983 178 NAKELVQKLEDYVP 191 (220)
Q Consensus 178 d~ee~~~~l~~~~~ 191 (220)
|++++.+.|.+...
T Consensus 316 ~~~~~~~~l~~l~~ 329 (365)
T cd03825 316 DPEDLAEGIEWLLA 329 (365)
T ss_pred CHHHHHHHHHHHHh
Confidence 78888888877653
No 91
>PRK09004 FMN-binding protein MioC; Provisional
Probab=47.07 E-value=37 Score=26.86 Aligned_cols=34 Identities=18% Similarity=0.223 Sum_probs=25.0
Q ss_pred CceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEE
Q 039983 11 FKRVCVFCGSSPDYKYCYRKAAVDLGNELVSRGLDLV 47 (220)
Q Consensus 11 ~~~I~Vfgss~~~~~~~~~~~A~~lG~~lA~~g~~lV 47 (220)
|++|.|+.+|..++. .+.|++|++.+.+.|+.+.
T Consensus 1 M~~i~I~ygS~tGna---e~~A~~l~~~~~~~g~~~~ 34 (146)
T PRK09004 1 MADITLISGSTLGGA---EYVADHLAEKLEEAGFSTE 34 (146)
T ss_pred CCeEEEEEEcCchHH---HHHHHHHHHHHHHcCCceE
Confidence 457888888887743 3567888888888887644
No 92
>PF01820 Dala_Dala_lig_N: D-ala D-ala ligase N-terminus; InterPro: IPR011127 This entry represents the N-terminal region of the D-alanine--D-alanine ligase enzyme (6.3.2.4 from EC) which is thought to be involved in substrate binding []. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine:D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity, 0009252 peptidoglycan biosynthetic process, 0005618 cell wall; PDB: 4EG0_B 3E5N_A 3RFC_A 3R5F_A 1IOV_A 1IOW_A 2DLN_A 3Q1K_D 3I12_C 3N8D_B ....
Probab=46.95 E-value=25 Score=26.84 Aligned_cols=36 Identities=17% Similarity=0.222 Sum_probs=27.2
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEE
Q 039983 12 KRVCVFCGSSPDYKYCYRKAAVDLGNELVSRGLDLV 47 (220)
Q Consensus 12 ~~I~Vfgss~~~~~~~~~~~A~~lG~~lA~~g~~lV 47 (220)
|+|+|.+|.....++.-...|+.+.+.|.+.+|.++
T Consensus 1 m~v~vlfGG~S~EheVSl~Sa~~v~~~L~~~~y~v~ 36 (117)
T PF01820_consen 1 MRVAVLFGGRSSEHEVSLRSARNVYEALDKEKYEVI 36 (117)
T ss_dssp EEEEEEEETSSTTHHHHHHHHHHHHHHSHTTTEEEE
T ss_pred CeEEEEeccCchhHHHHHHHHHHHHHHHhhhcceEE
Confidence 356665554444577778899999999999999987
No 93
>cd00411 Asparaginase Asparaginase (amidohydrolase): Asparaginases are tetrameric enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases, one highly specific for asparagine and localised to the periplasm, and a second (asparaginase- glutaminase) present in the cytosol that hydrolyzises both asparagine and glutamine with similar specificities.
Probab=46.64 E-value=53 Score=29.65 Aligned_cols=48 Identities=29% Similarity=0.277 Sum_probs=33.6
Q ss_pred hCCeEEEecCCcccHHHHHHHHHHHHhccCCCcEEEEcC-----CCCchhHHHHHH
Q 039983 107 NADCFIALPGGFGTLEELFEVTTWSQLGIHNKPVGLINV-----EGYYDPILNFID 157 (220)
Q Consensus 107 ~sda~IvlpGG~GTL~El~~~~t~~qlg~~~kPIill~~-----~g~~~~l~~~l~ 157 (220)
..|+|||.-| .-||+|....+.+.-- .+|||||-+. .-..|...++..
T Consensus 78 ~~dGiVVtHG-TDTmeeTA~~L~~~l~--~~kPVVlTGA~rp~~~~~sDg~~NL~~ 130 (323)
T cd00411 78 SYDGFVITHG-TDTMEETAYFLSLTLE--NDKPVVLTGSMRPSTELSADGPLNLYN 130 (323)
T ss_pred hcCcEEEEcC-cccHHHHHHHHHHHhc--CCCCEEEECCCCCCCCcCcchHHHHHH
Confidence 4789998876 8999999988876332 3899999854 123455555544
No 94
>PF14359 DUF4406: Domain of unknown function (DUF4406)
Probab=46.57 E-value=46 Score=24.53 Aligned_cols=37 Identities=24% Similarity=0.194 Sum_probs=27.7
Q ss_pred HHHHHHHHhCCeEEEecC---CcccHHHHHHHHHHHHhccCCCcEE
Q 039983 99 QRKAEMARNADCFIALPG---GFGTLEELFEVTTWSQLGIHNKPVG 141 (220)
Q Consensus 99 ~Rk~~~~~~sda~IvlpG---G~GTL~El~~~~t~~qlg~~~kPIi 141 (220)
.+...++..||+++.||| +-|..-|+..+-. .++||+
T Consensus 51 ~~~l~~L~~cD~i~~l~gWe~S~GA~~E~~~A~~------lGl~V~ 90 (92)
T PF14359_consen 51 RICLAMLSDCDAIYMLPGWENSRGARLEHELAKK------LGLPVI 90 (92)
T ss_pred HHHHHHHHhCCEEEEcCCcccCcchHHHHHHHHH------CCCeEe
Confidence 445566679999999998 6788888876664 366665
No 95
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=46.53 E-value=52 Score=28.98 Aligned_cols=37 Identities=22% Similarity=0.319 Sum_probs=27.4
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEE
Q 039983 12 KRVCVFCGSSPDYKYCYRKAAVDLGNELVSRGLDLVY 48 (220)
Q Consensus 12 ~~I~Vfgss~~~~~~~~~~~A~~lG~~lA~~g~~lVt 48 (220)
++|+|.+|.....++.-...++.+.+.|.+.||.++.
T Consensus 4 ~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~~ 40 (296)
T PRK14569 4 EKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVG 40 (296)
T ss_pred cEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEEE
Confidence 3577766544444666678999999999999998654
No 96
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=46.44 E-value=44 Score=32.00 Aligned_cols=45 Identities=13% Similarity=0.276 Sum_probs=31.1
Q ss_pred HHHHHHHHHHCCC-eEEEcCCCcChhHHHHHHHHhcC------CcEEEEeCCc
Q 039983 32 AVDLGNELVSRGL-DLVYGGGSVGLMGLISEEVHRGG------RHVLGIIPKA 77 (220)
Q Consensus 32 A~~lG~~lA~~g~-~lVtGGg~~GlM~ava~gA~~~g------G~viGv~P~~ 77 (220)
|+++.+.+...++ .||.-||- |..-.+..|..... ...+||||..
T Consensus 157 A~~la~~~~~~~~D~VV~vGGD-GTlnEVvNGL~~~~~~~~~~~~pLGiIPaG 208 (481)
T PLN02958 157 AKEVVRTMDLSKYDGIVCVSGD-GILVEVVNGLLEREDWKTAIKLPIGMVPAG 208 (481)
T ss_pred HHHHHHHhhhcCCCEEEEEcCC-CHHHHHHHHHhhCccccccccCceEEecCc
Confidence 4455555555555 46667776 99999999987652 3569999953
No 97
>PRK06703 flavodoxin; Provisional
Probab=45.02 E-value=53 Score=25.64 Aligned_cols=14 Identities=14% Similarity=0.321 Sum_probs=6.7
Q ss_pred HHHHHHhcCCcEEE
Q 039983 59 ISEEVHRGGRHVLG 72 (220)
Q Consensus 59 va~gA~~~gG~viG 72 (220)
+.+-..+.|..+++
T Consensus 105 l~~~l~~~G~~~~~ 118 (151)
T PRK06703 105 FEERLVERGAELVQ 118 (151)
T ss_pred HHHHHHHCCCEEcc
Confidence 33333445665554
No 98
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=44.78 E-value=20 Score=33.68 Aligned_cols=27 Identities=48% Similarity=0.804 Sum_probs=20.2
Q ss_pred eEEEcCCCcChhHHHHHHHHhcCCcEEEE
Q 039983 45 DLVYGGGSVGLMGLISEEVHRGGRHVLGI 73 (220)
Q Consensus 45 ~lVtGGg~~GlM~ava~gA~~~gG~viGv 73 (220)
++|-|||+.|+|-|..-+ ++|.+|+=+
T Consensus 6 viIIGgGpAGlMaA~~aa--~~G~~V~li 32 (408)
T COG2081 6 VIIIGGGPAGLMAAISAA--KAGRRVLLI 32 (408)
T ss_pred EEEECCCHHHHHHHHHHh--hcCCEEEEE
Confidence 577899999999886644 567666554
No 99
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=44.76 E-value=1.1e+02 Score=25.91 Aligned_cols=72 Identities=15% Similarity=0.333 Sum_probs=44.1
Q ss_pred HHHHHHHHhCCeEEEe---cCCcccHHHHHHHHHHHHhccCCCcEEEEcCCCCchhHHHHHHHHHHcCCCCccccCcEEE
Q 039983 99 QRKAEMARNADCFIAL---PGGFGTLEELFEVTTWSQLGIHNKPVGLINVEGYYDPILNFIDKSIDEGFIYPSQRSIIVS 175 (220)
Q Consensus 99 ~Rk~~~~~~sda~Ivl---pGG~GTL~El~~~~t~~qlg~~~kPIill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~ 175 (220)
+.-.-++..||++|.- ..|+|.- ++|++. .++||+.-+..+ ... ++ .+ .....++-
T Consensus 254 ~~~~~~~~~ad~~i~ps~~~e~~~~~--~~Ea~a------~G~Pvi~~~~~~-~~e---~i----~~-----~~~g~~~~ 312 (359)
T cd03823 254 EEIDDFYAEIDVLVVPSIWPENFPLV--IREALA------AGVPVIASDIGG-MAE---LV----RD-----GVNGLLFP 312 (359)
T ss_pred HHHHHHHHhCCEEEEcCcccCCCChH--HHHHHH------CCCCEEECCCCC-HHH---Hh----cC-----CCcEEEEC
Confidence 4445677889988764 2455543 566775 589999876543 222 21 11 12344555
Q ss_pred cCCHHHHHHHHHhhcC
Q 039983 176 ASNAKELVQKLEDYVP 191 (220)
Q Consensus 176 ~~d~ee~~~~l~~~~~ 191 (220)
.+|++++.+.+.....
T Consensus 313 ~~d~~~l~~~i~~l~~ 328 (359)
T cd03823 313 PGDAEDLAAALERLID 328 (359)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 6678999998887754
No 100
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=44.74 E-value=41 Score=27.75 Aligned_cols=83 Identities=16% Similarity=0.222 Sum_probs=48.9
Q ss_pred hCCeEEEecCCcccHHHHHHHHHHHHh-----c-cCCCcEEEEcC--CCCchh--HHHHHHHHHHcCC--CCccccCc--
Q 039983 107 NADCFIALPGGFGTLEELFEVTTWSQL-----G-IHNKPVGLINV--EGYYDP--ILNFIDKSIDEGF--IYPSQRSI-- 172 (220)
Q Consensus 107 ~sda~IvlpGG~GTL~El~~~~t~~ql-----g-~~~kPIill~~--~g~~~~--l~~~l~~~~~~g~--i~~~~~~~-- 172 (220)
.+|++||.|=..+|+.-+..=++-.-+ . ..++||++.-. ...|+. ..+.++.+.+.|+ ++++...+
T Consensus 76 ~aD~~vVaPaSanTlakiA~GiaDnLlt~~a~a~~~~~pv~i~PaMn~~M~~~p~~~~nl~~L~~~G~~vi~P~~g~la~ 155 (177)
T TIGR02113 76 KADLFLVAPASANTIAHLAHGFADNIVTSVALALPPETPKLIAPAMNTKMYQNPITQRNIKILKKIGYQEIQPKESLLAC 155 (177)
T ss_pred hhCEEEEEeCCHHHHHHHHcCcCCcHHHHHHHHcCCCCCEEEEeCCCHHHhCCHHHHHHHHHHHHCCCEEECCCcCcccC
Confidence 679999999999999887643221111 1 23789998731 357763 3445566666664 33333111
Q ss_pred ----EEEcCCHHHHHHHHHhh
Q 039983 173 ----IVSASNAKELVQKLEDY 189 (220)
Q Consensus 173 ----i~~~~d~ee~~~~l~~~ 189 (220)
.=-..+++++++.+.++
T Consensus 156 g~~g~g~~~~~~~i~~~~~~~ 176 (177)
T TIGR02113 156 GDYGRGALADLDDILQTIKEI 176 (177)
T ss_pred CCccccCCCCHHHHHHHHHHh
Confidence 11123577777777654
No 101
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=44.55 E-value=1.1e+02 Score=23.56 Aligned_cols=16 Identities=13% Similarity=0.212 Sum_probs=7.3
Q ss_pred CcEEEcCCHHHHHHHH
Q 039983 171 SIIVSASNAKELVQKL 186 (220)
Q Consensus 171 ~~i~~~~d~ee~~~~l 186 (220)
..+.++.|+--+-+..
T Consensus 96 ~~i~lVTs~~H~~Ra~ 111 (150)
T cd06259 96 RSVLLVTSAYHMPRAL 111 (150)
T ss_pred CeEEEECCHHHHHHHH
Confidence 3455555554443333
No 102
>PRK09330 cell division protein FtsZ; Validated
Probab=44.40 E-value=1.1e+02 Score=28.59 Aligned_cols=73 Identities=19% Similarity=0.372 Sum_probs=40.7
Q ss_pred HHHHHHHCCCeEEE---cCCC-cChhHHHHHHHHhcCCcEEEEeCCcccccccCCCCCceEeecCCHHHHHHHHHHhCCe
Q 039983 35 LGNELVSRGLDLVY---GGGS-VGLMGLISEEVHRGGRHVLGIIPKALMKKELTGVTLGEVKPVDHMHQRKAEMARNADC 110 (220)
Q Consensus 35 lG~~lA~~g~~lVt---GGg~-~GlM~ava~gA~~~gG~viGv~P~~~~~~e~~~~~~~~~~~~~~~~~Rk~~~~~~sda 110 (220)
+-+.|-..+..+|+ |||. +|.=-.+++-|++.|-.+++|.+.-+. .|.. .....-..--..|.+.+|.
T Consensus 91 I~~~l~~~D~vfI~AGmGGGTGTGaapvIA~iake~g~ltvaVvt~PF~-fEG~-------~r~~nA~~gL~~L~~~~D~ 162 (384)
T PRK09330 91 IREALEGADMVFITAGMGGGTGTGAAPVVAEIAKELGILTVAVVTKPFS-FEGK-------KRMKQAEEGIEELRKHVDT 162 (384)
T ss_pred HHHHHcCCCEEEEEecCCCcccHHHHHHHHHHHHHcCCcEEEEEecCcc-ccch-------hHHHHHHHHHHHHHHHCCE
Confidence 33444334555555 3332 466667889999999999999763211 1100 0011112334456678888
Q ss_pred EEEec
Q 039983 111 FIALP 115 (220)
Q Consensus 111 ~Ivlp 115 (220)
+|++|
T Consensus 163 vIvi~ 167 (384)
T PRK09330 163 LIVIP 167 (384)
T ss_pred EEEEe
Confidence 88876
No 103
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=44.34 E-value=27 Score=30.32 Aligned_cols=27 Identities=26% Similarity=0.318 Sum_probs=19.7
Q ss_pred eEEEcCCCcChhHHHHHHHHhcCCcEEE
Q 039983 45 DLVYGGGSVGLMGLISEEVHRGGRHVLG 72 (220)
Q Consensus 45 ~lVtGGg~~GlM~ava~gA~~~gG~viG 72 (220)
.|+|||+. |+=-+.++...+.|-+||=
T Consensus 8 iLITGG~s-GIGl~lak~f~elgN~VIi 34 (245)
T COG3967 8 ILITGGAS-GIGLALAKRFLELGNTVII 34 (245)
T ss_pred EEEeCCcc-hhhHHHHHHHHHhCCEEEE
Confidence 36677776 8888888888887777653
No 104
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=43.90 E-value=1.4e+02 Score=26.52 Aligned_cols=74 Identities=20% Similarity=0.306 Sum_probs=45.8
Q ss_pred HHHHHHHHhCCeEEEecC--CcccHHHHHHHHHHHHhccCCCcEEEEc-CCCCchhHHHHHHHHHHcCCCCccccCcEEE
Q 039983 99 QRKAEMARNADCFIALPG--GFGTLEELFEVTTWSQLGIHNKPVGLIN-VEGYYDPILNFIDKSIDEGFIYPSQRSIIVS 175 (220)
Q Consensus 99 ~Rk~~~~~~sda~IvlpG--G~GTL~El~~~~t~~qlg~~~kPIill~-~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~ 175 (220)
+....+...+|++|.-.- |+|. =+.|+++ .++||+..+ .+| ..++ +.+.....++-
T Consensus 249 ~~~~~~~~~~d~~v~~s~~Egf~~--~~lEAma------~G~Pvv~s~~~~g-~~ei------------v~~~~~G~lv~ 307 (359)
T PRK09922 249 EVVQQKIKNVSALLLTSKFEGFPM--TLLEAMS------YGIPCISSDCMSG-PRDI------------IKPGLNGELYT 307 (359)
T ss_pred HHHHHHHhcCcEEEECCcccCcCh--HHHHHHH------cCCCEEEeCCCCC-hHHH------------ccCCCceEEEC
Confidence 334445567888886443 3443 3667776 589999988 443 3222 11122344555
Q ss_pred cCCHHHHHHHHHhhcCCC
Q 039983 176 ASNAKELVQKLEDYVPSH 193 (220)
Q Consensus 176 ~~d~ee~~~~l~~~~~~~ 193 (220)
.+|++++.+.|.......
T Consensus 308 ~~d~~~la~~i~~l~~~~ 325 (359)
T PRK09922 308 PGNIDEFVGKLNKVISGE 325 (359)
T ss_pred CCCHHHHHHHHHHHHhCc
Confidence 689999999999876544
No 105
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=43.67 E-value=79 Score=26.31 Aligned_cols=69 Identities=20% Similarity=0.377 Sum_probs=40.8
Q ss_pred HHHHHHhCCeEEEec--CCcccHHHHHHHHHHHHhccCCCcEEEEcCCCCchhHHHHHHHHHHcCCCCccccCcEEEcCC
Q 039983 101 KAEMARNADCFIALP--GGFGTLEELFEVTTWSQLGIHNKPVGLINVEGYYDPILNFIDKSIDEGFIYPSQRSIIVSASN 178 (220)
Q Consensus 101 k~~~~~~sda~Ivlp--GG~GTL~El~~~~t~~qlg~~~kPIill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~d 178 (220)
...++..||++|... .|+|+- ++|++. .++|||..+..++ ..++ .......++-.+|
T Consensus 269 ~~~~~~~~di~i~~~~~~~~~~~--~~Ea~~------~g~pvI~~~~~~~-~~~~------------~~~~~g~~~~~~~ 327 (374)
T cd03801 269 LPALYAAADVFVLPSLYEGFGLV--LLEAMA------AGLPVVASDVGGI-PEVV------------EDGETGLLVPPGD 327 (374)
T ss_pred HHHHHHhcCEEEecchhccccch--HHHHHH------cCCcEEEeCCCCh-hHHh------------cCCcceEEeCCCC
Confidence 345567789877653 334432 566665 5899998875432 2211 1122344455556
Q ss_pred HHHHHHHHHhhc
Q 039983 179 AKELVQKLEDYV 190 (220)
Q Consensus 179 ~ee~~~~l~~~~ 190 (220)
++++.+.|.+..
T Consensus 328 ~~~l~~~i~~~~ 339 (374)
T cd03801 328 PEALAEAILRLL 339 (374)
T ss_pred HHHHHHHHHHHH
Confidence 899998888764
No 106
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=43.55 E-value=1.1e+02 Score=25.96 Aligned_cols=71 Identities=14% Similarity=0.167 Sum_probs=41.9
Q ss_pred HHHHHHHHhCCeEEEec--C--CcccHHHHHHHHHHHHhccCCCcEEEEcCCCCchhHHHHHHHHHHcCCCCccccCcEE
Q 039983 99 QRKAEMARNADCFIALP--G--GFGTLEELFEVTTWSQLGIHNKPVGLINVEGYYDPILNFIDKSIDEGFIYPSQRSIIV 174 (220)
Q Consensus 99 ~Rk~~~~~~sda~Ivlp--G--G~GTL~El~~~~t~~qlg~~~kPIill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~ 174 (220)
+....++..||++|.-. . |+|.. +.|++. .++||+..+..+ .+.+ .......++
T Consensus 259 ~~~~~~~~~ad~~v~ps~~e~~~~~~~--~~Ea~a------~G~PvI~~~~~~-~~~i-------------~~~~~g~~~ 316 (366)
T cd03822 259 EELPELFSAADVVVLPYRSADQTQSGV--LAYAIG------FGKPVISTPVGH-AEEV-------------LDGGTGLLV 316 (366)
T ss_pred HHHHHHHhhcCEEEecccccccccchH--HHHHHH------cCCCEEecCCCC-hhee-------------eeCCCcEEE
Confidence 34456778899887532 2 33322 445565 489999877644 2221 112233444
Q ss_pred EcCCHHHHHHHHHhhcC
Q 039983 175 SASNAKELVQKLEDYVP 191 (220)
Q Consensus 175 ~~~d~ee~~~~l~~~~~ 191 (220)
-.+|++++.+.|.....
T Consensus 317 ~~~d~~~~~~~l~~l~~ 333 (366)
T cd03822 317 PPGDPAALAEAIRRLLA 333 (366)
T ss_pred cCCCHHHHHHHHHHHHc
Confidence 45678998888887654
No 107
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=43.41 E-value=87 Score=23.08 Aligned_cols=70 Identities=21% Similarity=0.245 Sum_probs=37.8
Q ss_pred HHHHHHHhCCeEEEec-CCcccHHHHHHHHHHHHhccCCCcEEEEcCCCCchhHHHHHHHHHHcCCCCccccCcEEEcCC
Q 039983 100 RKAEMARNADCFIALP-GGFGTLEELFEVTTWSQLGIHNKPVGLINVEGYYDPILNFIDKSIDEGFIYPSQRSIIVSASN 178 (220)
Q Consensus 100 Rk~~~~~~sda~Ivlp-GG~GTL~El~~~~t~~qlg~~~kPIill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~d 178 (220)
...-++..+|+.|..- =+.++-.-++|.+. .++||+..+. + +..+ ....... +.+.+|
T Consensus 63 e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~------~G~pvi~~~~-~-~~~~------------~~~~~~~-~~~~~~ 121 (135)
T PF13692_consen 63 ELPEILAAADVGLIPSRFNEGFPNKLLEAMA------AGKPVIASDN-G-AEGI------------VEEDGCG-VLVAND 121 (135)
T ss_dssp HHHHHHHC-SEEEE-BSS-SCC-HHHHHHHC------TT--EEEEHH-H-CHCH------------S---SEE-EE-TT-
T ss_pred HHHHHHHhCCEEEEEeeCCCcCcHHHHHHHH------hCCCEEECCc-c-hhhh------------eeecCCe-EEECCC
Confidence 4555667788777632 13356666777775 5899998764 2 2221 1112233 444999
Q ss_pred HHHHHHHHHhhc
Q 039983 179 AKELVQKLEDYV 190 (220)
Q Consensus 179 ~ee~~~~l~~~~ 190 (220)
++++.+.|.+..
T Consensus 122 ~~~l~~~i~~l~ 133 (135)
T PF13692_consen 122 PEELAEAIERLL 133 (135)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998753
No 108
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=43.23 E-value=2.7e+02 Score=25.59 Aligned_cols=42 Identities=19% Similarity=0.329 Sum_probs=30.4
Q ss_pred CceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEE-EcCCCcChhHHHHHH
Q 039983 11 FKRVCVFCGSSPDYKYCYRKAAVDLGNELVSRGLDLV-YGGGSVGLMGLISEE 62 (220)
Q Consensus 11 ~~~I~Vfgss~~~~~~~~~~~A~~lG~~lA~~g~~lV-tGGg~~GlM~ava~g 62 (220)
+++|+|+|+.+.+ ..|++.|+++|+.+. +|=-+ .++...+..
T Consensus 1 ~~kI~ViGaGswG---------TALA~~la~ng~~V~lw~r~~-~~~~~i~~~ 43 (329)
T COG0240 1 MMKIAVIGAGSWG---------TALAKVLARNGHEVRLWGRDE-EIVAEINET 43 (329)
T ss_pred CceEEEEcCChHH---------HHHHHHHHhcCCeeEEEecCH-HHHHHHHhc
Confidence 3679999987643 478899999998765 55444 777776554
No 109
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=43.13 E-value=1e+02 Score=26.75 Aligned_cols=70 Identities=19% Similarity=0.296 Sum_probs=41.3
Q ss_pred HHHHHHhCCeEEEec--------CCcccHHHHHHHHHHHHhccCCCcEEEEcCCCCchhHHHHHHHHHHcCCCCccccCc
Q 039983 101 KAEMARNADCFIALP--------GGFGTLEELFEVTTWSQLGIHNKPVGLINVEGYYDPILNFIDKSIDEGFIYPSQRSI 172 (220)
Q Consensus 101 k~~~~~~sda~Ivlp--------GG~GTL~El~~~~t~~qlg~~~kPIill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~ 172 (220)
...++..||++|.-. -|+|+- ++|++. .++||+.-+..+. .. + +.......
T Consensus 258 l~~~~~~ad~~v~ps~~~~~~~~E~~~~~--~~EA~a------~G~PvI~s~~~~~-~e---~---------i~~~~~g~ 316 (367)
T cd05844 258 VRELMRRARIFLQPSVTAPSGDAEGLPVV--LLEAQA------SGVPVVATRHGGI-PE---A---------VEDGETGL 316 (367)
T ss_pred HHHHHHhCCEEEECcccCCCCCccCCchH--HHHHHH------cCCCEEEeCCCCc-hh---h---------eecCCeeE
Confidence 335668899877521 123332 667776 5899998776442 11 1 11222333
Q ss_pred EEEcCCHHHHHHHHHhhcC
Q 039983 173 IVSASNAKELVQKLEDYVP 191 (220)
Q Consensus 173 i~~~~d~ee~~~~l~~~~~ 191 (220)
++-.+|++++.+.|.+...
T Consensus 317 ~~~~~d~~~l~~~i~~l~~ 335 (367)
T cd05844 317 LVPEGDVAALAAALGRLLA 335 (367)
T ss_pred EECCCCHHHHHHHHHHHHc
Confidence 4445689999888887654
No 110
>PF02608 Bmp: Basic membrane protein; InterPro: IPR003760 This is a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. All of these proteins are outer membrane proteins and are thus antigenic in nature when possessed by the pathogenic members of the family []. The Bacillus subtilis degR, a positive regulator of the production of degradative enzymes, is also a member of this group [].; GO: 0005886 plasma membrane; PDB: 2HQB_A 3S99_A 2FQW_A 2FQY_A 2FQX_A.
Probab=42.60 E-value=41 Score=29.74 Aligned_cols=61 Identities=18% Similarity=0.271 Sum_probs=39.1
Q ss_pred CCCceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEcCCCcChhHHHHHHHHhcCCc--EEEEeC
Q 039983 9 SRFKRVCVFCGSSPDYKYCYRKAAVDLGNELVSRGLDLVYGGGSVGLMGLISEEVHRGGRH--VLGIIP 75 (220)
Q Consensus 9 ~~~~~I~Vfgss~~~~~~~~~~~A~~lG~~lA~~g~~lVtGGg~~GlM~ava~gA~~~gG~--viGv~P 75 (220)
+..+....|-++-. |+ ..++++++.|-..|..+|+.-.. +.-..+.+.|.+.|.. +||+--
T Consensus 159 p~i~v~~~~~gs~~--D~---~~~~~~a~~li~~GaDvI~~~ag-~~~~gv~~aa~e~g~~~~~IG~d~ 221 (306)
T PF02608_consen 159 PDIKVNVSYTGSFN--DP---AKAKEAAEALIDQGADVIFPVAG-GSGQGVIQAAKEAGVYGYVIGVDS 221 (306)
T ss_dssp TT-EEEEEE-SSSS---H---HHHHHHHHHHHHTT-SEEEEE-C-CCHHHHHHHHHHHTHETEEEEEES
T ss_pred cCceEEEEEcCCcC--ch---HHHHHHHHHHhhcCCeEEEECCC-CCchHHHHHHHHcCCceEEEEecc
Confidence 34444555555543 33 45788999988899999998333 4445556668888887 999943
No 111
>PRK12361 hypothetical protein; Provisional
Probab=42.59 E-value=51 Score=31.80 Aligned_cols=44 Identities=27% Similarity=0.392 Sum_probs=29.8
Q ss_pred HHHHHHHHHHCCC-eEEEcCCCcChhHHHHHHHHhcCCcEEEEeCCc
Q 039983 32 AVDLGNELVSRGL-DLVYGGGSVGLMGLISEEVHRGGRHVLGIIPKA 77 (220)
Q Consensus 32 A~~lG~~lA~~g~-~lVtGGg~~GlM~ava~gA~~~gG~viGv~P~~ 77 (220)
|.++++..++.++ .||..||- |--..+..+.... +..+||+|..
T Consensus 286 a~~la~~~~~~~~d~Viv~GGD-GTl~ev~~~l~~~-~~~lgiiP~G 330 (547)
T PRK12361 286 AEALAKQARKAGADIVIACGGD-GTVTEVASELVNT-DITLGIIPLG 330 (547)
T ss_pred HHHHHHHHHhcCCCEEEEECCC-cHHHHHHHHHhcC-CCCEEEecCC
Confidence 3455555555555 45566776 9888888888754 4679999953
No 112
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=42.35 E-value=89 Score=26.76 Aligned_cols=68 Identities=21% Similarity=0.223 Sum_probs=42.0
Q ss_pred HHHHHhCCeEEEecCCcccHHHHHHHHHHHHhccCCCcEEEEcCCCCchhHHHHHHHHHHcCCCCccccCcEEEcCCHHH
Q 039983 102 AEMARNADCFIALPGGFGTLEELFEVTTWSQLGIHNKPVGLINVEGYYDPILNFIDKSIDEGFIYPSQRSIIVSASNAKE 181 (220)
Q Consensus 102 ~~~~~~sda~IvlpGG~GTL~El~~~~t~~qlg~~~kPIill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~d~ee 181 (220)
..++..||++|.-...-|.-.=++|++. .++|||..+..+. .. . +.+ ...++-.+|+++
T Consensus 257 ~~~~~~ad~~v~~s~~e~~~~~~~Ea~a------~G~PvI~~~~~~~-~e---~---------i~~--~g~~~~~~~~~~ 315 (360)
T cd04951 257 AAYYNAADLFVLSSAWEGFGLVVAEAMA------CELPVVATDAGGV-RE---V---------VGD--SGLIVPISDPEA 315 (360)
T ss_pred HHHHHhhceEEecccccCCChHHHHHHH------cCCCEEEecCCCh-hh---E---------ecC--CceEeCCCCHHH
Confidence 3466889997765432121223677776 5899998765332 21 1 111 344566789999
Q ss_pred HHHHHHhhc
Q 039983 182 LVQKLEDYV 190 (220)
Q Consensus 182 ~~~~l~~~~ 190 (220)
+.+.+.+..
T Consensus 316 ~~~~i~~ll 324 (360)
T cd04951 316 LANKIDEIL 324 (360)
T ss_pred HHHHHHHHH
Confidence 999888874
No 113
>PRK04183 glutamyl-tRNA(Gln) amidotransferase subunit D; Validated
Probab=42.17 E-value=67 Score=30.36 Aligned_cols=48 Identities=17% Similarity=0.190 Sum_probs=35.7
Q ss_pred CCeEEEecCCcccHHHHHHHHHHHHhccCCCcEEEEcC-----CCCchhHHHHHHH
Q 039983 108 ADCFIALPGGFGTLEELFEVTTWSQLGIHNKPVGLINV-----EGYYDPILNFIDK 158 (220)
Q Consensus 108 sda~IvlpGG~GTL~El~~~~t~~qlg~~~kPIill~~-----~g~~~~l~~~l~~ 158 (220)
.|+|||.-| .-||+|-+.++.++- ..+|||||.+. .--.|...+++..
T Consensus 153 ~dGvVVtHG-TDTM~yTA~aLs~~l--~~~kPVVlTGAqrp~~~~~sDa~~NL~~A 205 (419)
T PRK04183 153 ADGVVVAHG-TDTMHYTAAALSFML--KTPVPIVFVGAQRSSDRPSSDAAMNLICA 205 (419)
T ss_pred CCeEEEecC-CchHHHHHHHHHHhc--CCCCCEEEeCCCCCCCCCCchHHHHHHHH
Confidence 799999886 899999998887755 45899999864 1245566666543
No 114
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=41.81 E-value=1.2e+02 Score=25.82 Aligned_cols=74 Identities=20% Similarity=0.284 Sum_probs=43.0
Q ss_pred HHHHHHHHhCCeEEEecCC------cccHHHHHHHHHHHHhccCCCcEEEEcCCCCchhHHHHHHHHHHcCCCCccccCc
Q 039983 99 QRKAEMARNADCFIALPGG------FGTLEELFEVTTWSQLGIHNKPVGLINVEGYYDPILNFIDKSIDEGFIYPSQRSI 172 (220)
Q Consensus 99 ~Rk~~~~~~sda~IvlpGG------~GTL~El~~~~t~~qlg~~~kPIill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~ 172 (220)
+....+...||++|...-. -|.-.=++|++. .++||+..+..++ ..++ .......
T Consensus 247 ~~l~~~~~~adi~l~~s~~~~~~~~e~~~~~~~Ea~a------~G~Pvi~~~~~~~-~~~i------------~~~~~g~ 307 (355)
T cd03799 247 EEVRELLRAADLFVLPSVTAADGDREGLPVVLMEAMA------MGLPVISTDVSGI-PELV------------EDGETGL 307 (355)
T ss_pred HHHHHHHHhCCEEEecceecCCCCccCccHHHHHHHH------cCCCEEecCCCCc-chhh------------hCCCceE
Confidence 4455667789987774221 222233677776 5899998775443 2211 1111233
Q ss_pred EEEcCCHHHHHHHHHhhcC
Q 039983 173 IVSASNAKELVQKLEDYVP 191 (220)
Q Consensus 173 i~~~~d~ee~~~~l~~~~~ 191 (220)
++-.+|++++.+.|.++..
T Consensus 308 ~~~~~~~~~l~~~i~~~~~ 326 (355)
T cd03799 308 LVPPGDPEALADAIERLLD 326 (355)
T ss_pred EeCCCCHHHHHHHHHHHHh
Confidence 3334589999888887653
No 115
>PF01985 CRS1_YhbY: CRS1 / YhbY (CRM) domain; InterPro: IPR001890 The CRM domain is an ~100-amino acid RNA-binding domain. The name chloroplast RNA splicing and ribosome maturation (CRM) has been suggested to reflect the functions established for the four characterised members of the family: Zea mays (Maize) CRS1 (Q9FYT6 from SWISSPROT), CAF1 (Q84N49 from SWISSPROT) and CAF2 (Q84N48 from SWISSPROT) proteins and the Escherichia coli protein YhbY (P0AGK4 from SWISSPROT). The CRM domain is found in eubacteria, archaea, and plants. The CRM domain is represented as a stand-alone protein in archaea and bacteria, and in single- and multi-domain proteins in plants. It has been suggested that prokaryotic CRM proteins existed as ribosome-associated proteins prior to the divergence of archaea and bacteria, and that they were co-opted in the plant lineage as RNA binding modules by incorporation into diverse protein contexts. Plant CRM domains are predicted to reside not only in the chloroplast, but also in the mitochondrion and the nucleo/cytoplasmic compartment. The diversity of the CRM domain family in plants suggests a diverse set of RNA targets [, ]. The CRM domain is a compact alpha/beta domain consisting of a four-stranded beta sheet and three alpha helices with an alpha-beta-alpha-beta-alpha-beta-beta topology. The beta sheet face is basic, consistent with a role in RNA binding. Proximal to the basic beta sheet face is another moiety that could contribute to nucleic acid recognition. Connecting strand beta1 and helix alpha2 is a loop with a six amino acid motif, GxxG flanked by large aliphatic residues, within which one 'x' is typically a basic residue []. Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly. GFP fused to a single-domain CRM protein from maize localises to the nucleolus, suggesting that an analogous activity may have been retained in plants []. A CRM domain containing protein in plant chloroplasts has been shown to function in group I and II intron splicing []. In vitro experiments with an isolated maize CRM domain have shown it to have RNA binding activity. These and other results suggest that the CRM domain evolved in the context of ribosome function prior to the divergence of Archaea and Bacteria, that this function has been maintained in extant prokaryotes, and that the domain was recruited to serve as an RNA binding module during the evolution of plant genomes []. YhbY has a fold similar to that of the C-terminal domain of translation initiation factor 3 (IF3C), which binds to 16S rRNA in the 30S ribosome [].; GO: 0003723 RNA binding; PDB: 1RQ8_A 1JO0_B 1LN4_A.
Probab=41.68 E-value=26 Score=25.31 Aligned_cols=58 Identities=22% Similarity=0.285 Sum_probs=33.1
Q ss_pred HHhccCCCcEEEEcCCCCchhHHHHHHH-HHHcCCCCccccCcEEEcCCHHHHHHHHHhhc
Q 039983 131 SQLGIHNKPVGLINVEGYYDPILNFIDK-SIDEGFIYPSQRSIIVSASNAKELVQKLEDYV 190 (220)
Q Consensus 131 ~qlg~~~kPIill~~~g~~~~l~~~l~~-~~~~g~i~~~~~~~i~~~~d~ee~~~~l~~~~ 190 (220)
.+.+.+-+|++.++.+|.++.+++.++. +.....+.-.... ..-+|.+++.+.|.+..
T Consensus 10 r~~a~~l~p~v~IGk~Glt~~vi~~i~~~l~~~eLvKVk~~~--~~~~~~~~~~~~l~~~t 68 (84)
T PF01985_consen 10 RKLAHHLKPVVQIGKNGLTDGVIEEIDDALEKHELVKVKVLG--NCREDRKEIAEQLAEKT 68 (84)
T ss_dssp HHHHTTC--SEEE-TTSS-HHHHHHHHHHHHHHSEEEEEETT----HHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCeEEECCCCCCHHHHHHHHHHHHhCCeeEEEEcc--CCHHHHHHHHHHHHHHh
Confidence 3334456999999999999999999865 4444444422222 23445667777776654
No 116
>PRK13057 putative lipid kinase; Reviewed
Probab=41.42 E-value=58 Score=28.44 Aligned_cols=32 Identities=25% Similarity=0.451 Sum_probs=23.6
Q ss_pred hCCeEEEecCCcccHHHHHHHHHHHHhccCCCcEEEEc
Q 039983 107 NADCFIALPGGFGTLEELFEVTTWSQLGIHNKPVGLIN 144 (220)
Q Consensus 107 ~sda~IvlpGG~GTL~El~~~~t~~qlg~~~kPIill~ 144 (220)
..| .|+.-||=||++|+...+. ..+.|+.++.
T Consensus 50 ~~d-~iiv~GGDGTv~~v~~~l~-----~~~~~lgiiP 81 (287)
T PRK13057 50 GVD-LVIVGGGDGTLNAAAPALV-----ETGLPLGILP 81 (287)
T ss_pred CCC-EEEEECchHHHHHHHHHHh-----cCCCcEEEEC
Confidence 345 5667899999999987763 1357888884
No 117
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=40.87 E-value=32 Score=31.14 Aligned_cols=29 Identities=38% Similarity=0.604 Sum_probs=23.3
Q ss_pred CCCeEEEcCCCcChhHHHHHHHHhcCCcEE
Q 039983 42 RGLDLVYGGGSVGLMGLISEEVHRGGRHVL 71 (220)
Q Consensus 42 ~g~~lVtGGg~~GlM~ava~gA~~~gG~vi 71 (220)
.+..||||||. |+=.+.+....+.|..++
T Consensus 38 g~~vLITGgg~-GlGr~ialefa~rg~~~v 66 (300)
T KOG1201|consen 38 GEIVLITGGGS-GLGRLIALEFAKRGAKLV 66 (300)
T ss_pred CCEEEEeCCCc-hHHHHHHHHHHHhCCeEE
Confidence 56778899988 999998888888887543
No 118
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=40.86 E-value=1.2e+02 Score=26.90 Aligned_cols=129 Identities=17% Similarity=0.201 Sum_probs=67.2
Q ss_pred HHHHHHHHHCC---CeEEEcCCCcChhHH--HHHHHHhcCCcEEEE-eCCcccccccCCCCCceEeecCCHHHHHHHHHH
Q 039983 33 VDLGNELVSRG---LDLVYGGGSVGLMGL--ISEEVHRGGRHVLGI-IPKALMKKELTGVTLGEVKPVDHMHQRKAEMAR 106 (220)
Q Consensus 33 ~~lG~~lA~~g---~~lVtGGg~~GlM~a--va~gA~~~gG~viGv-~P~~~~~~e~~~~~~~~~~~~~~~~~Rk~~~~~ 106 (220)
..|.++-+++. ..-+|+|.| ++-.. +.++..++|...+=+ +|-. ++ +.++--.++.....
T Consensus 6 ~~F~~l~~~~~~a~i~yit~GdP-~~e~s~e~i~~L~~~GaD~iELGvPfS--------DP-----vADGP~Iq~A~~rA 71 (265)
T COG0159 6 QKFAQLKAENRGALIPYVTAGDP-DLETSLEIIKTLVEAGADILELGVPFS--------DP-----VADGPTIQAAHLRA 71 (265)
T ss_pred HHHHHHHHhCCCCeEEEEeCCCC-CHHHHHHHHHHHHhCCCCEEEecCCCC--------Cc-----CccCHHHHHHHHHH
Confidence 34444444432 345678887 66543 345556677666544 2421 11 22333333333322
Q ss_pred hCCeEEEecCCcccHHHHHHHHHHHHhccCCCcEEEEcCC--CCchhHHHHHHHHHHcCCCCccccCcEEEcCCHHHHHH
Q 039983 107 NADCFIALPGGFGTLEELFEVTTWSQLGIHNKPVGLINVE--GYYDPILNFIDKSIDEGFIYPSQRSIIVSASNAKELVQ 184 (220)
Q Consensus 107 ~sda~IvlpGG~GTL~El~~~~t~~qlg~~~kPIill~~~--g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~d~ee~~~ 184 (220)
|-+|+ |++..++.+....-.-...|++|+..- =|+..+.+|++.+.+.|. +-+++.|=|-|--+
T Consensus 72 -------L~~g~-t~~~~lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~Gv------dGlivpDLP~ee~~ 137 (265)
T COG0159 72 -------LAAGV-TLEDTLELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGV------DGLLVPDLPPEESD 137 (265)
T ss_pred -------HHCCC-CHHHHHHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCC------CEEEeCCCChHHHH
Confidence 33343 556666665443322246799999421 133446667777766664 55777777666555
Q ss_pred HHHhh
Q 039983 185 KLEDY 189 (220)
Q Consensus 185 ~l~~~ 189 (220)
.+..+
T Consensus 138 ~~~~~ 142 (265)
T COG0159 138 ELLKA 142 (265)
T ss_pred HHHHH
Confidence 55543
No 119
>PRK13057 putative lipid kinase; Reviewed
Probab=40.66 E-value=59 Score=28.39 Aligned_cols=43 Identities=21% Similarity=0.404 Sum_probs=28.8
Q ss_pred HHHHHHHHHHCCC-eEEEcCCCcChhHHHHHHHHhcCCcEEEEeCCc
Q 039983 32 AVDLGNELVSRGL-DLVYGGGSVGLMGLISEEVHRGGRHVLGIIPKA 77 (220)
Q Consensus 32 A~~lG~~lA~~g~-~lVtGGg~~GlM~ava~gA~~~gG~viGv~P~~ 77 (220)
|.++.+.+. .++ .||..||- |-...+..+.... +..+||+|..
T Consensus 40 a~~~~~~~~-~~~d~iiv~GGD-GTv~~v~~~l~~~-~~~lgiiP~G 83 (287)
T PRK13057 40 LSEVIEAYA-DGVDLVIVGGGD-GTLNAAAPALVET-GLPLGILPLG 83 (287)
T ss_pred HHHHHHHHH-cCCCEEEEECch-HHHHHHHHHHhcC-CCcEEEECCC
Confidence 344444433 443 45566766 9999999988754 5679999953
No 120
>smart00870 Asparaginase Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma PUBMED:3026924. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma PUBMED:2407723, PUBMED:3379033 - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die.
Probab=40.51 E-value=1.7e+02 Score=26.33 Aligned_cols=50 Identities=26% Similarity=0.206 Sum_probs=33.3
Q ss_pred hCCeEEEecCCcccHHHHHHHHHHHHhccCCCcEEEEcC-----CCCchhHHHHHHH
Q 039983 107 NADCFIALPGGFGTLEELFEVTTWSQLGIHNKPVGLINV-----EGYYDPILNFIDK 158 (220)
Q Consensus 107 ~sda~IvlpGG~GTL~El~~~~t~~qlg~~~kPIill~~-----~g~~~~l~~~l~~ 158 (220)
..|+|||.-| .-||+|....+.+.- ...+|||||-+. .--.|...+++..
T Consensus 77 ~~dG~VVtHG-TDTmeeTA~~Ls~~l-~~l~kPVVlTGa~rp~~~~~sDg~~NL~~A 131 (323)
T smart00870 77 GYDGVVVTHG-TDTLEETAYFLSLTL-DSLDKPVVLTGAMRPATALSSDGPANLLDA 131 (323)
T ss_pred CCCEEEEecC-CccHHHHHHHHHHHh-hcCCCCEEEECCCCCCCCCCchhHHHHHHH
Confidence 4688888865 899999988876532 223799999854 1234555555543
No 121
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=40.31 E-value=1.7e+02 Score=26.08 Aligned_cols=62 Identities=23% Similarity=0.198 Sum_probs=39.8
Q ss_pred CCCceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCe------------------------------EEEcCCCcChhHH
Q 039983 9 SRFKRVCVFCGSSPDYKYCYRKAAVDLGNELVSRGLD------------------------------LVYGGGSVGLMGL 58 (220)
Q Consensus 9 ~~~~~I~Vfgss~~~~~~~~~~~A~~lG~~lA~~g~~------------------------------lVtGGg~~GlM~a 58 (220)
+.+++|+|+.-.. ++...+.+.++.++|.++|+. +|+=||- |-+-.
T Consensus 3 ~~~~~i~iv~~~~---~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~lGGD-GT~L~ 78 (292)
T PRK03378 3 NHFKCIGIVGHPR---HPTALTTHEMLYHWLTSKGYEVIVEQQIAHELQLKNVKTGTLAEIGQQADLAIVVGGD-GNMLG 78 (292)
T ss_pred ccCCEEEEEEeCC---CHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcCCCCCEEEEECCc-HHHHH
Confidence 4577899997543 456667788888877555432 2334454 77766
Q ss_pred HHHHHHhcCCcEEEEe
Q 039983 59 ISEEVHRGGRHVLGII 74 (220)
Q Consensus 59 va~gA~~~gG~viGv~ 74 (220)
+++.+...+-.++||-
T Consensus 79 aa~~~~~~~~Pilgin 94 (292)
T PRK03378 79 AARVLARYDIKVIGIN 94 (292)
T ss_pred HHHHhcCCCCeEEEEE
Confidence 6666655566778773
No 122
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=40.25 E-value=23 Score=33.02 Aligned_cols=27 Identities=41% Similarity=0.625 Sum_probs=17.7
Q ss_pred eEEEcCCCcChhHHHHHHHHhcCCcEEEE
Q 039983 45 DLVYGGGSVGLMGLISEEVHRGGRHVLGI 73 (220)
Q Consensus 45 ~lVtGGg~~GlM~ava~gA~~~gG~viGv 73 (220)
.||.|||+.|++-|+ .|.++|-+|+=|
T Consensus 2 VVVvGgG~aG~~AAi--~AAr~G~~VlLi 28 (428)
T PF12831_consen 2 VVVVGGGPAGVAAAI--AAARAGAKVLLI 28 (428)
T ss_dssp EEEE--SHHHHHHHH--HHHHTTS-EEEE
T ss_pred EEEECccHHHHHHHH--HHHHCCCEEEEE
Confidence 478999998888765 455677777766
No 123
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=40.24 E-value=56 Score=28.29 Aligned_cols=33 Identities=33% Similarity=0.617 Sum_probs=23.7
Q ss_pred cHHHHHHHHHHHHhccCCCcEEEEcCCCCchhHHHH
Q 039983 120 TLEELFEVTTWSQLGIHNKPVGLINVEGYYDPILNF 155 (220)
Q Consensus 120 TL~El~~~~t~~qlg~~~kPIill~~~g~~~~l~~~ 155 (220)
||+-+++......-.-...||+|+ |||++++.+
T Consensus 78 tl~~i~emvk~ar~~gvt~PIiLm---gYYNPIl~y 110 (268)
T KOG4175|consen 78 TLNSIIEMVKEARPQGVTCPIILM---GYYNPILRY 110 (268)
T ss_pred cHHHHHHHHHHhcccCcccceeee---ecccHHHhh
Confidence 788888777544332246899998 699998765
No 124
>PRK08862 short chain dehydrogenase; Provisional
Probab=40.22 E-value=1.4e+02 Score=24.82 Aligned_cols=54 Identities=9% Similarity=0.052 Sum_probs=29.9
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEcCCCcChhHHHHHHHHhcCCcEEEE
Q 039983 12 KRVCVFCGSSPDYKYCYRKAAVDLGNELVSRGLDLVYGGGSVGLMGLISEEVHRGGRHVLGI 73 (220)
Q Consensus 12 ~~I~Vfgss~~~~~~~~~~~A~~lG~~lA~~g~~lVtGGg~~GlM~ava~gA~~~gG~viGv 73 (220)
+++.|.|+++- ..+++++.|+++|+.|+.-+....-.+.+.+...+.++.+..+
T Consensus 6 k~~lVtGas~G--------IG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~ 59 (227)
T PRK08862 6 SIILITSAGSV--------LGRTISCHFARLGATLILCDQDQSALKDTYEQCSALTDNVYSF 59 (227)
T ss_pred eEEEEECCccH--------HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCCeEEE
Confidence 46777777662 3456777777788887654444233333334344445554443
No 125
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=39.60 E-value=50 Score=25.42 Aligned_cols=30 Identities=23% Similarity=0.367 Sum_probs=22.5
Q ss_pred CeEEEcCCCcChhHHHHHHHHhcCCcEEEEe
Q 039983 44 LDLVYGGGSVGLMGLISEEVHRGGRHVLGII 74 (220)
Q Consensus 44 ~~lVtGGg~~GlM~ava~gA~~~gG~viGv~ 74 (220)
..||+||.. |+=.++++...+.|+.++.++
T Consensus 2 ~~lItGa~~-giG~~~a~~l~~~g~~~v~~~ 31 (167)
T PF00106_consen 2 TVLITGASS-GIGRALARALARRGARVVILT 31 (167)
T ss_dssp EEEEETTTS-HHHHHHHHHHHHTTTEEEEEE
T ss_pred EEEEECCCC-HHHHHHHHHHHhcCceEEEEe
Confidence 357888887 888888888888877555543
No 126
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=39.57 E-value=1.3e+02 Score=27.17 Aligned_cols=83 Identities=22% Similarity=0.268 Sum_probs=41.1
Q ss_pred CCeEEEcCCCcChhHHHHHHHHhcCC-cEEEEeCCcccccccCCCCC-ceEeecC---CHHHHHHHHHH--hCCeEEEec
Q 039983 43 GLDLVYGGGSVGLMGLISEEVHRGGR-HVLGIIPKALMKKELTGVTL-GEVKPVD---HMHQRKAEMAR--NADCFIALP 115 (220)
Q Consensus 43 g~~lVtGGg~~GlM~ava~gA~~~gG-~viGv~P~~~~~~e~~~~~~-~~~~~~~---~~~~Rk~~~~~--~sda~Ivlp 115 (220)
+..+|.|.|+.|+|-+ ..|...|. ++|.+ -......+.+.+.. .+.+... ....+...+.. -.|.+|-..
T Consensus 170 ~~V~V~GaGpIGLla~--~~a~~~Ga~~Viv~-d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~ 246 (350)
T COG1063 170 GTVVVVGAGPIGLLAI--ALAKLLGASVVIVV-DRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAV 246 (350)
T ss_pred CEEEEECCCHHHHHHH--HHHHHcCCceEEEe-CCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECC
Confidence 3589999999999973 45566674 44444 11111222222211 1222211 12222222222 378888888
Q ss_pred CCcccHHHHHHHH
Q 039983 116 GGFGTLEELFEVT 128 (220)
Q Consensus 116 GG~GTL~El~~~~ 128 (220)
|-.-|++....+.
T Consensus 247 G~~~~~~~ai~~~ 259 (350)
T COG1063 247 GSPPALDQALEAL 259 (350)
T ss_pred CCHHHHHHHHHHh
Confidence 8555555544443
No 127
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=39.49 E-value=76 Score=29.19 Aligned_cols=82 Identities=22% Similarity=0.196 Sum_probs=48.6
Q ss_pred CCeEEEcCCCcChhHHHHHHHHhcCCcEEEEeCCcccccccCCC-CCceEeecCCHHHHHHHHHHhCCeEEEecCCcccH
Q 039983 43 GLDLVYGGGSVGLMGLISEEVHRGGRHVLGIIPKALMKKELTGV-TLGEVKPVDHMHQRKAEMARNADCFIALPGGFGTL 121 (220)
Q Consensus 43 g~~lVtGGg~~GlM~ava~gA~~~gG~viGv~P~~~~~~e~~~~-~~~~~~~~~~~~~Rk~~~~~~sda~IvlpGG~GTL 121 (220)
.+.+|+|.|+.|.|.. +=|+..|.+|++|.-+... .+.... ..+..+... -......+.+..|++|..-+ -=|+
T Consensus 168 ~~V~I~G~GGlGh~av--Q~Aka~ga~Via~~~~~~K-~e~a~~lGAd~~i~~~-~~~~~~~~~~~~d~ii~tv~-~~~~ 242 (339)
T COG1064 168 KWVAVVGAGGLGHMAV--QYAKAMGAEVIAITRSEEK-LELAKKLGADHVINSS-DSDALEAVKEIADAIIDTVG-PATL 242 (339)
T ss_pred CEEEEECCcHHHHHHH--HHHHHcCCeEEEEeCChHH-HHHHHHhCCcEEEEcC-CchhhHHhHhhCcEEEECCC-hhhH
Confidence 5668999997777755 7788889999999543211 111111 112233322 22222223234899999988 7787
Q ss_pred HHHHHHHH
Q 039983 122 EELFEVTT 129 (220)
Q Consensus 122 ~El~~~~t 129 (220)
+.....+.
T Consensus 243 ~~~l~~l~ 250 (339)
T COG1064 243 EPSLKALR 250 (339)
T ss_pred HHHHHHHh
Confidence 77666654
No 128
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=39.47 E-value=42 Score=26.23 Aligned_cols=31 Identities=13% Similarity=0.238 Sum_probs=21.6
Q ss_pred cCCCceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEE
Q 039983 8 KSRFKRVCVFCGSSPDYKYCYRKAAVDLGNELVSRGLDLV 47 (220)
Q Consensus 8 ~~~~~~I~Vfgss~~~~~~~~~~~A~~lG~~lA~~g~~lV 47 (220)
+..+.+|+|+|..+.+ ..||+.|.+.||.|+
T Consensus 7 ~~~~l~I~iIGaGrVG---------~~La~aL~~ag~~v~ 37 (127)
T PF10727_consen 7 QAARLKIGIIGAGRVG---------TALARALARAGHEVV 37 (127)
T ss_dssp -----EEEEECTSCCC---------CHHHHHHHHTTSEEE
T ss_pred CCCccEEEEECCCHHH---------HHHHHHHHHCCCeEE
Confidence 4455689999998875 468888889999864
No 129
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=39.41 E-value=1.9e+02 Score=26.02 Aligned_cols=72 Identities=11% Similarity=0.164 Sum_probs=43.4
Q ss_pred HHHHHHHHhCCeEEEe---cCCcccHHHHHHHHHHHHhccCCCcEEEEcCCCCchhHHHHHHHHHHcCCCCccccCcEEE
Q 039983 99 QRKAEMARNADCFIAL---PGGFGTLEELFEVTTWSQLGIHNKPVGLINVEGYYDPILNFIDKSIDEGFIYPSQRSIIVS 175 (220)
Q Consensus 99 ~Rk~~~~~~sda~Ivl---pGG~GTL~El~~~~t~~qlg~~~kPIill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~ 175 (220)
+....+...||++|+- ..|+|.. +.|++. .++||+.-+.+|. .++ +.......+.+
T Consensus 268 ~~l~~~~~~aDv~v~pS~~~E~f~~~--~lEAma------~G~PVI~s~~gg~-~Ei------------v~~~~~G~~l~ 326 (380)
T PRK15484 268 EKMHNYYPLADLVVVPSQVEEAFCMV--AVEAMA------AGKPVLASTKGGI-TEF------------VLEGITGYHLA 326 (380)
T ss_pred HHHHHHHHhCCEEEeCCCCccccccH--HHHHHH------cCCCEEEeCCCCc-Hhh------------cccCCceEEEe
Confidence 3345567899998873 3556654 567776 5899999876543 221 11111222222
Q ss_pred -cCCHHHHHHHHHhhcC
Q 039983 176 -ASNAKELVQKLEDYVP 191 (220)
Q Consensus 176 -~~d~ee~~~~l~~~~~ 191 (220)
..|++++.+.|.+...
T Consensus 327 ~~~d~~~la~~I~~ll~ 343 (380)
T PRK15484 327 EPMTSDSIISDINRTLA 343 (380)
T ss_pred CCCCHHHHHHHHHHHHc
Confidence 4588888888877653
No 130
>cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The nuclear SIRT1 has been shown to target the p53 tumor suppressor protein for deacetylation to suppress DNA damage, and the cytoplasmic SIRT2 homolog has been shown to target alpha-tubulin for deacetylation for the maintenance of cell integrity.
Probab=39.27 E-value=84 Score=26.99 Aligned_cols=70 Identities=16% Similarity=0.086 Sum_probs=37.9
Q ss_pred HHHHHHHHHhCCeEEEecCCcccHHHHHHHHHHHHhccCCCcEEEEcCCCCchhHHHHHHHHHHcCCCCccccCcEEEcC
Q 039983 98 HQRKAEMARNADCFIALPGGFGTLEELFEVTTWSQLGIHNKPVGLINVEGYYDPILNFIDKSIDEGFIYPSQRSIIVSAS 177 (220)
Q Consensus 98 ~~Rk~~~~~~sda~IvlpGG~GTL~El~~~~t~~qlg~~~kPIill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~ 177 (220)
..+....++.+|.+||++=. + ++.-+..+.+.-..+.|++++|.+.- + + +.....-+++..
T Consensus 166 ~~~~~~~~~~aDlllvvGTS-l---~V~pa~~l~~~~~~~~~~v~iN~~~~--~------------~-~~~~~~d~~~~~ 226 (235)
T cd01408 166 FSHMEEDKEEADLLIVIGTS-L---KVAPFASLPSRVPSEVPRVLINREPV--G------------H-LGKRPFDVALLG 226 (235)
T ss_pred HHHHHHHHhcCCEEEEECCC-C---eeccHHHHHHHHhCCCcEEEEeCCCC--C------------C-CCCCCcCEEEeC
Confidence 45555667889999986422 2 22222222222234689999996410 0 0 001122367788
Q ss_pred CHHHHHHHH
Q 039983 178 NAKELVQKL 186 (220)
Q Consensus 178 d~ee~~~~l 186 (220)
+.+|++..|
T Consensus 227 ~~~~~l~~~ 235 (235)
T cd01408 227 DCDDGVREL 235 (235)
T ss_pred CHHHHHHhC
Confidence 888887654
No 131
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=39.18 E-value=1.4e+02 Score=23.02 Aligned_cols=72 Identities=21% Similarity=0.404 Sum_probs=42.3
Q ss_pred HHHHHHHHHhCCeEEEecC--CcccHHHHHHHHHHHHhccCCCcEEEEcCCCCchhHHHHHHHHHHcCCCCccccCcEEE
Q 039983 98 HQRKAEMARNADCFIALPG--GFGTLEELFEVTTWSQLGIHNKPVGLINVEGYYDPILNFIDKSIDEGFIYPSQRSIIVS 175 (220)
Q Consensus 98 ~~Rk~~~~~~sda~IvlpG--G~GTL~El~~~~t~~qlg~~~kPIill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~ 175 (220)
......+...||++|...- |+|+ =+.|++. .++|+++-+.. .+..+ +.+ .....++-
T Consensus 83 ~~~l~~~~~~~di~v~~s~~e~~~~--~~~Ea~~------~g~pvI~~~~~-~~~e~-------~~~-----~~~g~~~~ 141 (172)
T PF00534_consen 83 DDELDELYKSSDIFVSPSRNEGFGL--SLLEAMA------CGCPVIASDIG-GNNEI-------IND-----GVNGFLFD 141 (172)
T ss_dssp HHHHHHHHHHTSEEEE-BSSBSS-H--HHHHHHH------TT-EEEEESST-HHHHH-------SGT-----TTSEEEES
T ss_pred ccccccccccceecccccccccccc--ccccccc------cccceeecccc-CCcee-------ecc-----ccceEEeC
Confidence 4455677788999998843 4444 3566675 48999988743 22221 111 12334554
Q ss_pred cCCHHHHHHHHHhhc
Q 039983 176 ASNAKELVQKLEDYV 190 (220)
Q Consensus 176 ~~d~ee~~~~l~~~~ 190 (220)
..|++++.+.|.+..
T Consensus 142 ~~~~~~l~~~i~~~l 156 (172)
T PF00534_consen 142 PNDIEELADAIEKLL 156 (172)
T ss_dssp TTSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 667899888888764
No 132
>PRK09461 ansA cytoplasmic asparaginase I; Provisional
Probab=39.13 E-value=83 Score=28.61 Aligned_cols=51 Identities=22% Similarity=0.186 Sum_probs=35.7
Q ss_pred HhCCeEEEecCCcccHHHHHHHHHHHHhccCCCcEEEEcC-----CCCchhHHHHHHH
Q 039983 106 RNADCFIALPGGFGTLEELFEVTTWSQLGIHNKPVGLINV-----EGYYDPILNFIDK 158 (220)
Q Consensus 106 ~~sda~IvlpGG~GTL~El~~~~t~~qlg~~~kPIill~~-----~g~~~~l~~~l~~ 158 (220)
+..|+|||.-| .-||+|-...+.+... ..+|||||-+. .--.|...++...
T Consensus 80 ~~~dG~VVtHG-TDTmeeTA~~L~~~l~-~~~kPVVlTGAmrP~~~~~sDg~~NL~~A 135 (335)
T PRK09461 80 DDYDGFVILHG-TDTMAYTASALSFMLE-NLGKPVIVTGSQIPLAELRSDGQTNLLNA 135 (335)
T ss_pred ccCCeEEEeec-cchHHHHHHHHHHHHh-CCCCCEEEeCCCCCCCCCCchHHHHHHHH
Confidence 45799999886 8999999888775432 23799999864 2235566666543
No 133
>PLN02591 tryptophan synthase
Probab=39.07 E-value=1.5e+02 Score=25.87 Aligned_cols=41 Identities=27% Similarity=0.491 Sum_probs=25.8
Q ss_pred cHHHHHHHHHHHHhccCCCcEEEEcCCCCchhHH-----HHHHHHHHcCC
Q 039983 120 TLEELFEVTTWSQLGIHNKPVGLINVEGYYDPIL-----NFIDKSIDEGF 164 (220)
Q Consensus 120 TL~El~~~~t~~qlg~~~kPIill~~~g~~~~l~-----~~l~~~~~~g~ 164 (220)
|++.+|+.+.-.. ...+.|++++ +||+++. +|++.+.+.|.
T Consensus 62 ~~~~~~~~~~~~r-~~~~~p~ilm---~Y~N~i~~~G~~~F~~~~~~aGv 107 (250)
T PLN02591 62 TLDSVISMLKEVA-PQLSCPIVLF---TYYNPILKRGIDKFMATIKEAGV 107 (250)
T ss_pred CHHHHHHHHHHHh-cCCCCCEEEE---ecccHHHHhHHHHHHHHHHHcCC
Confidence 5667777765433 2356899887 4777544 46676666653
No 134
>COG0252 AnsB L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D [Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=38.89 E-value=51 Score=30.42 Aligned_cols=34 Identities=26% Similarity=0.213 Sum_probs=27.3
Q ss_pred CeEEEecCCcccHHHHHHHHHHHHhccCCCcEEEEcC
Q 039983 109 DCFIALPGGFGTLEELFEVTTWSQLGIHNKPVGLINV 145 (220)
Q Consensus 109 da~IvlpGG~GTL~El~~~~t~~qlg~~~kPIill~~ 145 (220)
|.|||.-| .-||+|-...+.++.-. +|||||.+.
T Consensus 102 dGvVItHG-TDTmeeTA~~L~l~l~~--~kPVVlTGa 135 (351)
T COG0252 102 DGVVITHG-TDTMEETAFFLSLTLNT--PKPVVLTGA 135 (351)
T ss_pred CeEEEeCC-CchHHHHHHHHHHHhcC--CCCEEEeCC
Confidence 78888775 89999999888775543 899999864
No 135
>COG0163 UbiX 3-polyprenyl-4-hydroxybenzoate decarboxylase [Coenzyme metabolism]
Probab=38.43 E-value=70 Score=27.05 Aligned_cols=80 Identities=18% Similarity=0.216 Sum_probs=53.3
Q ss_pred hCCeEEEecCCcccHHHHHHHHHHHHhc-------cCCCcEEEEcCC-CCch-hHHHHHHHHHHcC-CCCccccCcEEEc
Q 039983 107 NADCFIALPGGFGTLEELFEVTTWSQLG-------IHNKPVGLINVE-GYYD-PILNFIDKSIDEG-FIYPSQRSIIVSA 176 (220)
Q Consensus 107 ~sda~IvlpGG~GTL~El~~~~t~~qlg-------~~~kPIill~~~-g~~~-~l~~~l~~~~~~g-~i~~~~~~~i~~~ 176 (220)
..|+.|+.|=.+.||..+..=++-.-+. +.++|.+|+--+ -+-. +|.+.++ +.+.| .|-+.....++--
T Consensus 80 ~~~gMiI~PCSmkTla~IA~G~~dnLi~RAAdV~LKErR~LVLv~REtPl~~ihLeNMlk-l~~~GaiI~Pp~PaFY~~P 158 (191)
T COG0163 80 RTDGMIIAPCSMKTLAAIAHGFADNLITRAADVALKERRPLVLVPRETPLSLIHLENMLK-LAEMGAIIMPPMPAFYHKP 158 (191)
T ss_pred CcCcEEEEeCcHHHHHHHHhcccccHHHHHHHHHHhhCCceEEEeccCCccHHHHHHHHH-HHHCCCEecCCChhhhcCC
Confidence 3579999999999999988766554443 247888887422 2222 3444333 34444 4556666777788
Q ss_pred CCHHHHHHHHH
Q 039983 177 SNAKELVQKLE 187 (220)
Q Consensus 177 ~d~ee~~~~l~ 187 (220)
.+.||+++++-
T Consensus 159 ~sieDlvd~~v 169 (191)
T COG0163 159 QSIEDLVDFVV 169 (191)
T ss_pred CCHHHHHHHHH
Confidence 89999998875
No 136
>PRK13059 putative lipid kinase; Reviewed
Probab=38.35 E-value=86 Score=27.58 Aligned_cols=34 Identities=24% Similarity=0.556 Sum_probs=23.7
Q ss_pred hCCeEEEecCCcccHHHHHHHHHHHHhccCCCcEEEEc
Q 039983 107 NADCFIALPGGFGTLEELFEVTTWSQLGIHNKPVGLIN 144 (220)
Q Consensus 107 ~sda~IvlpGG~GTL~El~~~~t~~qlg~~~kPIill~ 144 (220)
..| .|+.-||=||++|+...+.. .+ .+.|+.++-
T Consensus 56 ~~d-~vi~~GGDGTv~evv~gl~~--~~-~~~~lgviP 89 (295)
T PRK13059 56 SYK-YILIAGGDGTVDNVVNAMKK--LN-IDLPIGILP 89 (295)
T ss_pred CCC-EEEEECCccHHHHHHHHHHh--cC-CCCcEEEEC
Confidence 345 56678999999999877632 11 247888884
No 137
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=38.33 E-value=88 Score=28.68 Aligned_cols=48 Identities=6% Similarity=0.064 Sum_probs=27.4
Q ss_pred CCc-EEEEcCCCCchhHHHHHHHHHHcCCCCccccCcEEEcCCHHHHHHHHH
Q 039983 137 NKP-VGLINVEGYYDPILNFIDKSIDEGFIYPSQRSIIVSASNAKELVQKLE 187 (220)
Q Consensus 137 ~kP-Iill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~d~ee~~~~l~ 187 (220)
.+| +++++..-|+......+..+...-.. ....+++.-+++.+++...
T Consensus 125 srpllvilDd~fy~ks~Ryel~~LAr~~~~---~~~~V~ld~ple~~l~RN~ 173 (340)
T TIGR03575 125 SRPLCLVLDDNFYYQSMRYEVYQLARKYSL---GFCQLFLDCPVESCLLRNK 173 (340)
T ss_pred hCCCCceecCCCCCHHHHHHHHHHHHHhCC---CEEEEEEeCCHHHHHHHHh
Confidence 577 56667655666666666555433111 1345666667776666654
No 138
>PF04412 DUF521: Protein of unknown function (DUF521); InterPro: IPR007506 This is a group of hypothetical proteins.
Probab=38.11 E-value=3.5e+02 Score=25.47 Aligned_cols=143 Identities=16% Similarity=0.169 Sum_probs=76.7
Q ss_pred cCCCceEEEEcCCCCC-CCHHHHHHHHHHHHHHHHCCCeEEEcCCC-cChhHHHHHHHHhc--CC----cEEEEeCCccc
Q 039983 8 KSRFKRVCVFCGSSPD-YKYCYRKAAVDLGNELVSRGLDLVYGGGS-VGLMGLISEEVHRG--GR----HVLGIIPKALM 79 (220)
Q Consensus 8 ~~~~~~I~Vfgss~~~-~~~~~~~~A~~lG~~lA~~g~~lVtGGg~-~GlM~ava~gA~~~--gG----~viGv~P~~~~ 79 (220)
.+|+.++-|--..... .+..|--.-..+|+.+ ..+..+++|... ...-..=+-+|.-+ |+ ++.||+|+...
T Consensus 178 EnR~~~~~v~v~~~~~~d~~~~~~LG~~iG~~~-~~~IPvi~g~~~~p~~d~lK~lgAA~Atsgs~~m~Hi~GvTPEa~~ 256 (400)
T PF04412_consen 178 ENRRATILVEVEAPPEEDDADWGLLGYLIGKKV-GDRIPVITGLERRPSEDDLKALGAAMATSGSVAMFHIVGVTPEAPT 256 (400)
T ss_pred cCCCCeEEEEeCCCCCcCcchHHHHHHHHHHhc-CCCcCeEeCCCCCCCHHHHHHHhhhhhcccceeeEEEeCCCCCCCc
Confidence 3566667776665543 3344443334444443 248999998876 45555545554443 33 67899997542
Q ss_pred ccccCCCCCceEeec-CCH-HHHHHHH-HHhCC-eEEEecCCcccHHHHHHHHHHHHhcc--CCCcEEEEcCCCCchh
Q 039983 80 KKELTGVTLGEVKPV-DHM-HQRKAEM-ARNAD-CFIALPGGFGTLEELFEVTTWSQLGI--HNKPVGLINVEGYYDP 151 (220)
Q Consensus 80 ~~e~~~~~~~~~~~~-~~~-~~Rk~~~-~~~sd-a~IvlpGG~GTL~El~~~~t~~qlg~--~~kPIill~~~g~~~~ 151 (220)
..+.-......+.+. .++ ..++.+- ....+ =+|+|+-=-=|++|+.++..+.+-.. .++|+++.-.-..+..
T Consensus 257 ~~~a~~~~~e~i~i~~~dl~~~~~~l~~~~~~~~D~V~lGcPH~S~~El~~ia~ll~gr~~~~~~~~~i~t~~~v~~~ 334 (400)
T PF04412_consen 257 LEAAFGGKAERITITDADLEEVYEELNTAGDEKVDLVALGCPHLSLEELREIAELLEGRKVHPNVPLWITTSRAVYEL 334 (400)
T ss_pred chhhhcCCceEEEeCHHHHHHHHHHhccCCCCCCCEEEECCCCCCHHHHHHHHHHHhCCCCCCCceEEEECCHHHHHH
Confidence 221111111222232 222 1222221 11123 36777777789999998887766444 4689988865333433
No 139
>PRK06756 flavodoxin; Provisional
Probab=38.07 E-value=90 Score=24.20 Aligned_cols=15 Identities=20% Similarity=0.379 Sum_probs=6.9
Q ss_pred HHHHHHHhcCCcEEE
Q 039983 58 LISEEVHRGGRHVLG 72 (220)
Q Consensus 58 ava~gA~~~gG~viG 72 (220)
...+-..+.|..+++
T Consensus 105 ~l~~~l~~~g~~~v~ 119 (148)
T PRK06756 105 ILIEKLQERGAAVVL 119 (148)
T ss_pred HHHHHHHHCCCEEcC
Confidence 333334445555554
No 140
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=38.03 E-value=1.5e+02 Score=26.41 Aligned_cols=71 Identities=17% Similarity=0.300 Sum_probs=42.8
Q ss_pred HHHHHHHHhCCeEEEe--cCCcccHHHHHHHHHHHHhccCCCcEEEEcCCCCchhHHHHHHHHHHcCCCCccccCcEEEc
Q 039983 99 QRKAEMARNADCFIAL--PGGFGTLEELFEVTTWSQLGIHNKPVGLINVEGYYDPILNFIDKSIDEGFIYPSQRSIIVSA 176 (220)
Q Consensus 99 ~Rk~~~~~~sda~Ivl--pGG~GTL~El~~~~t~~qlg~~~kPIill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~ 176 (220)
+....++..||++|.- ..|+|.. +.|++. .++||+..+..+ ...++ .+ .....++-.
T Consensus 294 ~~~~~~l~~ad~~v~ps~~E~~g~~--~lEAma------~G~Pvi~~~~~~-~~e~i-------~~-----~~~g~~~~~ 352 (405)
T TIGR03449 294 EELVHVYRAADVVAVPSYNESFGLV--AMEAQA------CGTPVVAARVGG-LPVAV-------AD-----GETGLLVDG 352 (405)
T ss_pred HHHHHHHHhCCEEEECCCCCCcChH--HHHHHH------cCCCEEEecCCC-cHhhh-------cc-----CCceEECCC
Confidence 4455678899998864 3566654 667775 489999887643 22211 11 111222223
Q ss_pred CCHHHHHHHHHhhc
Q 039983 177 SNAKELVQKLEDYV 190 (220)
Q Consensus 177 ~d~ee~~~~l~~~~ 190 (220)
+|++++.+.|.++.
T Consensus 353 ~d~~~la~~i~~~l 366 (405)
T TIGR03449 353 HDPADWADALARLL 366 (405)
T ss_pred CCHHHHHHHHHHHH
Confidence 58888887777664
No 141
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=37.56 E-value=2.8e+02 Score=24.80 Aligned_cols=66 Identities=17% Similarity=0.311 Sum_probs=37.3
Q ss_pred CCCeEEE---cCCC-cChhHHHHHHHHhcCCcEEEEeCCcccccccCCCCCceEeecCCHHHHHHHHHHhCCeEEEec
Q 039983 42 RGLDLVY---GGGS-VGLMGLISEEVHRGGRHVLGIIPKALMKKELTGVTLGEVKPVDHMHQRKAEMARNADCFIALP 115 (220)
Q Consensus 42 ~g~~lVt---GGg~-~GlM~ava~gA~~~gG~viGv~P~~~~~~e~~~~~~~~~~~~~~~~~Rk~~~~~~sda~Ivlp 115 (220)
.+..+|+ |||. +|.=-.+++-+++.+..+++|.|..+. .|. .....+-...-..|.+.+|.+|+++
T Consensus 85 ~D~v~i~aglGGGTGSG~ap~ia~~~ke~~~~~~~vvt~Pf~-~Eg-------~~~~~NA~~~l~~L~~~~D~~iv~d 154 (303)
T cd02191 85 VDMVFITAGLGGGTGTGGAPVVAEHLKRIGTLTVAVVTLPFS-DEG-------GIRMLNAAEGFQTLVREVDNLMVIP 154 (303)
T ss_pred CCEEEEEeccCCccchhHHHHHHHHHHHhCCCEEEEEeCCcc-cCC-------ccchhhHHHHHHHHHHhCCEEEEEe
Confidence 3444554 3333 477777788899999899999663221 111 1111122234445667777777775
No 142
>PRK08887 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=37.54 E-value=44 Score=27.36 Aligned_cols=24 Identities=13% Similarity=0.142 Sum_probs=18.0
Q ss_pred CceEEEEcCCCCCCCHHHHHHHHH
Q 039983 11 FKRVCVFCGSSPDYKYCYRKAAVD 34 (220)
Q Consensus 11 ~~~I~Vfgss~~~~~~~~~~~A~~ 34 (220)
|++|||||||=...+--+...|++
T Consensus 1 m~~i~ifGGSFDP~H~GHl~ia~~ 24 (174)
T PRK08887 1 MKKIAVFGSAFNPPSLGHKSVIES 24 (174)
T ss_pred CCeEEEeCCCCCCCCHHHHHHHHH
Confidence 457999999997777666666655
No 143
>PRK05723 flavodoxin; Provisional
Probab=37.39 E-value=63 Score=25.83 Aligned_cols=33 Identities=18% Similarity=0.222 Sum_probs=24.8
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEE
Q 039983 12 KRVCVFCGSSPDYKYCYRKAAVDLGNELVSRGLDLV 47 (220)
Q Consensus 12 ~~I~Vfgss~~~~~~~~~~~A~~lG~~lA~~g~~lV 47 (220)
++|+|+.+|..++. .+.|++|++.+.+.|+.+.
T Consensus 1 ~~i~I~ygS~tG~a---e~~A~~la~~l~~~g~~~~ 33 (151)
T PRK05723 1 MKVAILSGSVYGTA---EEVARHAESLLKAAGFEAW 33 (151)
T ss_pred CeEEEEEEcCchHH---HHHHHHHHHHHHHCCCcee
Confidence 46888888887753 3457888888888888764
No 144
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=37.22 E-value=1.9e+02 Score=24.82 Aligned_cols=58 Identities=14% Similarity=0.207 Sum_probs=38.1
Q ss_pred CCCceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEcCCCcChhHHHHHHHHhcCCcEEEEe
Q 039983 9 SRFKRVCVFCGSSPDYKYCYRKAAVDLGNELVSRGLDLVYGGGSVGLMGLISEEVHRGGRHVLGII 74 (220)
Q Consensus 9 ~~~~~I~Vfgss~~~~~~~~~~~A~~lG~~lA~~g~~lVtGGg~~GlM~ava~gA~~~gG~viGv~ 74 (220)
+..+...+|.++.. |+ ..++++++.|-.+|..+|+..+. |. .+.+.|.+.|..+||+-
T Consensus 150 p~~~v~~~~~g~~~--D~---~~a~~~a~~l~~~G~DvI~~~~~-~~--g~~~aa~~~g~~~IG~d 207 (258)
T cd06353 150 PDATVKVIWTGSWF--DP---AKEKEAALALIDQGADVIYQHTD-SP--GVIQAAEEKGVYAIGYV 207 (258)
T ss_pred CCcEEEEEEecCCC--Cc---HHHHHHHHHHHHCCCcEEEecCC-Ch--HHHHHHHHhCCEEEeec
Confidence 34445555666553 22 45677788777889999987642 31 34455778899999993
No 145
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=37.16 E-value=1.2e+02 Score=26.72 Aligned_cols=68 Identities=19% Similarity=0.258 Sum_probs=41.3
Q ss_pred HHHhCCeEEEec--CCcccHHHHHHHHHHHHhccCCCcEEEEcCCCCchhHHHHHHHHHHcCCCCccccCcEEEcCCHHH
Q 039983 104 MARNADCFIALP--GGFGTLEELFEVTTWSQLGIHNKPVGLINVEGYYDPILNFIDKSIDEGFIYPSQRSIIVSASNAKE 181 (220)
Q Consensus 104 ~~~~sda~Ivlp--GG~GTL~El~~~~t~~qlg~~~kPIill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~d~ee 181 (220)
+...||++|... .|+|.. +.|++. +++|||..+...--.. ++.......++-..|+++
T Consensus 275 ~~~~ad~~v~~S~~Eg~~~~--~lEAma------~G~PvI~~~~~~g~~~------------~v~~~~~G~lv~~~d~~~ 334 (372)
T cd04949 275 VYQKAQLSLLTSQSEGFGLS--LMEALS------HGLPVISYDVNYGPSE------------IIEDGENGYLVPKGDIEA 334 (372)
T ss_pred HHhhhhEEEecccccccChH--HHHHHh------CCCCEEEecCCCCcHH------------HcccCCCceEeCCCcHHH
Confidence 456789888775 345532 567775 5899999875411111 122222334444458999
Q ss_pred HHHHHHhhcC
Q 039983 182 LVQKLEDYVP 191 (220)
Q Consensus 182 ~~~~l~~~~~ 191 (220)
+.+.|..+..
T Consensus 335 la~~i~~ll~ 344 (372)
T cd04949 335 LAEAIIELLN 344 (372)
T ss_pred HHHHHHHHHc
Confidence 8888887754
No 146
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=36.97 E-value=1.9e+02 Score=25.76 Aligned_cols=61 Identities=23% Similarity=0.320 Sum_probs=35.3
Q ss_pred CCceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCe------------------------------EEEcCCCcChhHHH
Q 039983 10 RFKRVCVFCGSSPDYKYCYRKAAVDLGNELVSRGLD------------------------------LVYGGGSVGLMGLI 59 (220)
Q Consensus 10 ~~~~I~Vfgss~~~~~~~~~~~A~~lG~~lA~~g~~------------------------------lVtGGg~~GlM~av 59 (220)
.+++|+|+.-.. .+...+.++++.++|.++|+. +++-||- |-+--+
T Consensus 3 ~~~~v~iv~~~~---k~~a~e~~~~i~~~L~~~giev~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~GGD-Gt~l~~ 78 (295)
T PRK01231 3 SFRNIGLIGRLG---SSSVVETLRRLKDFLLDRGLEVILDEETAEVLPGHGLQTVSRKLLGEVCDLVIVVGGD-GSLLGA 78 (295)
T ss_pred CCCEEEEEecCC---CHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcccCCCEEEEEeCc-HHHHHH
Confidence 366799986544 245555666666666544322 3444555 755555
Q ss_pred HHHHHhcCCcEEEEe
Q 039983 60 SEEVHRGGRHVLGII 74 (220)
Q Consensus 60 a~gA~~~gG~viGv~ 74 (220)
++.+...+-.++||-
T Consensus 79 ~~~~~~~~~Pvlgin 93 (295)
T PRK01231 79 ARALARHNVPVLGIN 93 (295)
T ss_pred HHHhcCCCCCEEEEe
Confidence 555544556778874
No 147
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=36.34 E-value=71 Score=26.87 Aligned_cols=34 Identities=15% Similarity=0.267 Sum_probs=23.5
Q ss_pred hcCCCceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEE
Q 039983 7 AKSRFKRVCVFCGSSPDYKYCYRKAAVDLGNELVSRGLDLVY 48 (220)
Q Consensus 7 ~~~~~~~I~Vfgss~~~~~~~~~~~A~~lG~~lA~~g~~lVt 48 (220)
++.++++|.|+|++. ...+.+.+.|.++|+.|+.
T Consensus 13 ~~~~~~~ilItGasG--------~iG~~l~~~L~~~g~~V~~ 46 (251)
T PLN00141 13 ENVKTKTVFVAGATG--------RTGKRIVEQLLAKGFAVKA 46 (251)
T ss_pred ccccCCeEEEECCCc--------HHHHHHHHHHHhCCCEEEE
Confidence 344567899999876 2356677777778888754
No 148
>PRK09355 hydroxyethylthiazole kinase; Validated
Probab=36.21 E-value=1.5e+02 Score=25.69 Aligned_cols=42 Identities=29% Similarity=0.379 Sum_probs=23.4
Q ss_pred HHHHhCCeEEEecCCcccHHHHH--HHHHHHH-hccCCCcEEEEcCCCC
Q 039983 103 EMARNADCFIALPGGFGTLEELF--EVTTWSQ-LGIHNKPVGLINVEGY 148 (220)
Q Consensus 103 ~~~~~sda~IvlpGG~GTL~El~--~~~t~~q-lg~~~kPIill~~~g~ 148 (220)
-++..+|++++ +.||+.+-. .+....+ ...+++|+ ++++.+.
T Consensus 50 ~~~~~~~alvi---~~G~l~~~~~~~i~~~~~~a~~~~~pv-VlDpv~~ 94 (263)
T PRK09355 50 EMAKIAGALVI---NIGTLTEERIEAMLAAGKIANEAGKPV-VLDPVGV 94 (263)
T ss_pred HHHHhcCceEE---eCCCCCHHHHHHHHHHHHHHHhcCCCE-EECCccc
Confidence 34578899998 555554432 2222222 23457896 4676553
No 149
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=36.10 E-value=3e+02 Score=24.22 Aligned_cols=110 Identities=14% Similarity=0.157 Sum_probs=60.4
Q ss_pred eEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEE-EcCCCcChhHHHHHHHHhcCCcEEEEeCCcccccccCCCCCceE
Q 039983 13 RVCVFCGSSPDYKYCYRKAAVDLGNELVSRGLDLV-YGGGSVGLMGLISEEVHRGGRHVLGIIPKALMKKELTGVTLGEV 91 (220)
Q Consensus 13 ~I~Vfgss~~~~~~~~~~~A~~lG~~lA~~g~~lV-tGGg~~GlM~ava~gA~~~gG~viGv~P~~~~~~e~~~~~~~~~ 91 (220)
++=|.+....-. |+.. ..-+-++.|.+.|+.++ |-.-. +. .++...+.|-..+ .|- -.+... ...
T Consensus 95 KlEVi~d~~~Ll-pd~~-~tv~aa~~L~~~Gf~vlpyc~dd--~~--~ar~l~~~G~~~v--mPl-g~pIGs-g~G---- 160 (248)
T cd04728 95 KLEVIGDDKTLL-PDPI-ETLKAAEILVKEGFTVLPYCTDD--PV--LAKRLEDAGCAAV--MPL-GSPIGS-GQG---- 160 (248)
T ss_pred EEEEecCccccc-cCHH-HHHHHHHHHHHCCCEEEEEeCCC--HH--HHHHHHHcCCCEe--CCC-CcCCCC-CCC----
Confidence 455666544321 2222 23455667778888888 65443 33 3344555565555 331 111111 111
Q ss_pred eecCCHHHHHHHHHHhCCeEEEecCCcccHHHHHHHHHHHHhccCCCcEEEEcC
Q 039983 92 KPVDHMHQRKAEMARNADCFIALPGGFGTLEELFEVTTWSQLGIHNKPVGLINV 145 (220)
Q Consensus 92 ~~~~~~~~Rk~~~~~~sda~IvlpGG~GTL~El~~~~t~~qlg~~~kPIill~~ 145 (220)
+. + .+.-+.+.+..+.-|+..||+||.+++..++.+ +---+++|+
T Consensus 161 -i~-~-~~~I~~I~e~~~vpVI~egGI~tpeda~~Amel------GAdgVlV~S 205 (248)
T cd04728 161 -LL-N-PYNLRIIIERADVPVIVDAGIGTPSDAAQAMEL------GADAVLLNT 205 (248)
T ss_pred -CC-C-HHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHc------CCCEEEECh
Confidence 11 1 333335666678999999999999999988863 444455554
No 150
>PRK07109 short chain dehydrogenase; Provisional
Probab=36.05 E-value=1.7e+02 Score=25.99 Aligned_cols=57 Identities=14% Similarity=0.199 Sum_probs=34.6
Q ss_pred CceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEcCCCcChhHHHHHHHHhcCCcEEEEeC
Q 039983 11 FKRVCVFCGSSPDYKYCYRKAAVDLGNELVSRGLDLVYGGGSVGLMGLISEEVHRGGRHVLGIIP 75 (220)
Q Consensus 11 ~~~I~Vfgss~~~~~~~~~~~A~~lG~~lA~~g~~lVtGGg~~GlM~ava~gA~~~gG~viGv~P 75 (220)
.++|.|.|+++- ..+.+++.|+++|+.|+.-+...--.+...+...+.|+++..+..
T Consensus 8 ~k~vlITGas~g--------IG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~ 64 (334)
T PRK07109 8 RQVVVITGASAG--------VGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGEALAVVA 64 (334)
T ss_pred CCEEEEECCCCH--------HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEe
Confidence 457888888762 346677788889998875444312223333444455677665543
No 151
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=36.01 E-value=1.9e+02 Score=24.59 Aligned_cols=106 Identities=15% Similarity=0.068 Sum_probs=58.2
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEE--EcCCCcChhHHHHHHHHhcCCcEEEEeCCcccccccCC---C
Q 039983 12 KRVCVFCGSSPDYKYCYRKAAVDLGNELVSRGLDLV--YGGGSVGLMGLISEEVHRGGRHVLGIIPKALMKKELTG---V 86 (220)
Q Consensus 12 ~~I~Vfgss~~~~~~~~~~~A~~lG~~lA~~g~~lV--tGGg~~GlM~ava~gA~~~gG~viGv~P~~~~~~e~~~---~ 86 (220)
+.|.|+=+.. .+.+.++++.|.+.|+.++ |=-.+ +..++..+-..+.+...||.-- .+. .++.. +
T Consensus 9 ~liaVlr~~~-------~e~a~~~~~al~~~Gi~~iEit~~t~-~a~~~i~~l~~~~~~~~vGAGT-Vl~-~~~a~~a~~ 78 (204)
T TIGR01182 9 KIVPVIRIDD-------VDDALPLAKALIEGGLRVLEVTLRTP-VALDAIRLLRKEVPDALIGAGT-VLN-PEQLRQAVD 78 (204)
T ss_pred CEEEEEecCC-------HHHHHHHHHHHHHcCCCEEEEeCCCc-cHHHHHHHHHHHCCCCEEEEEe-CCC-HHHHHHHHH
Confidence 4566664432 3567788888888888764 32334 7777766666566667777721 111 11110 0
Q ss_pred CCceEeecCCHHHHHHHHHHhCCeEEEecCCcccHHHHHHHHH
Q 039983 87 TLGEVKPVDHMHQRKAEMARNADCFIALPGGFGTLEELFEVTT 129 (220)
Q Consensus 87 ~~~~~~~~~~~~~Rk~~~~~~sda~IvlpGG~GTL~El~~~~t 129 (220)
.=-+.++..++.. ...-...-.-+.++| |.-|..|+..++.
T Consensus 79 aGA~FivsP~~~~-~v~~~~~~~~i~~iP-G~~TptEi~~A~~ 119 (204)
T TIGR01182 79 AGAQFIVSPGLTP-ELAKHAQDHGIPIIP-GVATPSEIMLALE 119 (204)
T ss_pred cCCCEEECCCCCH-HHHHHHHHcCCcEEC-CCCCHHHHHHHHH
Confidence 0023455555522 222222223567777 6788888888875
No 152
>PRK06973 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=35.84 E-value=60 Score=28.21 Aligned_cols=31 Identities=16% Similarity=0.104 Sum_probs=24.6
Q ss_pred CCceEEEEcCCCCCCCHHHHHHHHHHHHHHH
Q 039983 10 RFKRVCVFCGSSPDYKYCYRKAAVDLGNELV 40 (220)
Q Consensus 10 ~~~~I~Vfgss~~~~~~~~~~~A~~lG~~lA 40 (220)
+.++|+|||||=...+--+...|+++.+.+.
T Consensus 20 ~~~~IgifGGSFdPiH~GHl~ia~~~~~~l~ 50 (243)
T PRK06973 20 RPRRIGILGGTFDPIHDGHLALARRFADVLD 50 (243)
T ss_pred CCceEEEECCCCCCCcHHHHHHHHHHHHHcC
Confidence 4456999999998878888888888777764
No 153
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=35.84 E-value=1.1e+02 Score=26.71 Aligned_cols=69 Identities=20% Similarity=0.294 Sum_probs=40.8
Q ss_pred HHHHHHhCCeEEEe--cCCcccHHHHHHHHHHHHhccCCCcEEEEcCCCCchhHHHHHHHHHHcCCCCccccCcEEEcCC
Q 039983 101 KAEMARNADCFIAL--PGGFGTLEELFEVTTWSQLGIHNKPVGLINVEGYYDPILNFIDKSIDEGFIYPSQRSIIVSASN 178 (220)
Q Consensus 101 k~~~~~~sda~Ivl--pGG~GTL~El~~~~t~~qlg~~~kPIill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~d 178 (220)
...+...||++|.- ..|+|.. ++|++. .++||+..+..+ . .++ +.+.....+.-.+|
T Consensus 296 ~~~~~~~adi~l~ps~~e~~~~~--l~Ea~a------~G~Pvi~s~~~~-~---~e~---------i~~~~~g~~~~~~~ 354 (398)
T cd03800 296 LPALYRAADVFVNPALYEPFGLT--ALEAMA------CGLPVVATAVGG-P---RDI---------VVDGVTGLLVDPRD 354 (398)
T ss_pred HHHHHHhCCEEEecccccccCcH--HHHHHh------cCCCEEECCCCC-H---HHH---------ccCCCCeEEeCCCC
Confidence 34456779998753 3455543 567775 589998876533 2 222 11112233333468
Q ss_pred HHHHHHHHHhhc
Q 039983 179 AKELVQKLEDYV 190 (220)
Q Consensus 179 ~ee~~~~l~~~~ 190 (220)
++++.+.|.+..
T Consensus 355 ~~~l~~~i~~l~ 366 (398)
T cd03800 355 PEALAAALRRLL 366 (398)
T ss_pred HHHHHHHHHHHH
Confidence 999888887764
No 154
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=35.83 E-value=66 Score=26.90 Aligned_cols=36 Identities=19% Similarity=0.326 Sum_probs=28.8
Q ss_pred CceEEEEcCCCCCC-CHHHHHHHHHHHHHHHHCCCeE
Q 039983 11 FKRVCVFCGSSPDY-KYCYRKAAVDLGNELVSRGLDL 46 (220)
Q Consensus 11 ~~~I~Vfgss~~~~-~~~~~~~A~~lG~~lA~~g~~l 46 (220)
|++|+|.|.-...+ ---++..+++|+..|+++|+.+
T Consensus 1 mkkIaIiGtrGIPa~YGGfET~ve~L~~~l~~~g~~v 37 (185)
T PF09314_consen 1 MKKIAIIGTRGIPARYGGFETFVEELAPRLVSKGIDV 37 (185)
T ss_pred CceEEEEeCCCCCcccCcHHHHHHHHHHHHhcCCceE
Confidence 67899999876543 3467788999999999988863
No 155
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=35.82 E-value=90 Score=23.46 Aligned_cols=9 Identities=11% Similarity=0.505 Sum_probs=4.5
Q ss_pred HhcCCcEEE
Q 039983 64 HRGGRHVLG 72 (220)
Q Consensus 64 ~~~gG~viG 72 (220)
.+.|..+++
T Consensus 107 ~~~g~~~v~ 115 (140)
T TIGR01753 107 KEAGATIIA 115 (140)
T ss_pred HHCCCEEec
Confidence 334655544
No 156
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=35.42 E-value=1.3e+02 Score=26.87 Aligned_cols=30 Identities=20% Similarity=0.206 Sum_probs=23.3
Q ss_pred HHHHHHhCCeEEEecCCcccHHHHHHHHHH
Q 039983 101 KAEMARNADCFIALPGGFGTLEELFEVTTW 130 (220)
Q Consensus 101 k~~~~~~sda~IvlpGG~GTL~El~~~~t~ 130 (220)
-+++.+.++.-|++.+|+||-+....++.+
T Consensus 181 l~~i~e~~~vpVivdAGIgt~sDa~~AmEl 210 (267)
T CHL00162 181 LQIIIENAKIPVIIDAGIGTPSEASQAMEL 210 (267)
T ss_pred HHHHHHcCCCcEEEeCCcCCHHHHHHHHHc
Confidence 456777788888888888888888777753
No 157
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=35.40 E-value=1.2e+02 Score=24.07 Aligned_cols=41 Identities=10% Similarity=0.028 Sum_probs=35.5
Q ss_pred HHHHHHHHHCCCeEEEcCCCcChhHHHHHHHHhcCCcEEEEe
Q 039983 33 VDLGNELVSRGLDLVYGGGSVGLMGLISEEVHRGGRHVLGII 74 (220)
Q Consensus 33 ~~lG~~lA~~g~~lVtGGg~~GlM~ava~gA~~~gG~viGv~ 74 (220)
.-+...|-.+||.+++-|-. =-.+.+.+.|.+.+-.+||+.
T Consensus 19 ~iv~~~l~~~GfeVi~LG~~-v~~e~~v~aa~~~~adiVglS 59 (134)
T TIGR01501 19 KILDHAFTNAGFNVVNLGVL-SPQEEFIKAAIETKADAILVS 59 (134)
T ss_pred HHHHHHHHHCCCEEEECCCC-CCHHHHHHHHHHcCCCEEEEe
Confidence 55667788899999998877 778999999999999999993
No 158
>PRK07775 short chain dehydrogenase; Provisional
Probab=35.26 E-value=2e+02 Score=24.40 Aligned_cols=36 Identities=19% Similarity=0.190 Sum_probs=25.6
Q ss_pred cCCCceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEcCC
Q 039983 8 KSRFKRVCVFCGSSPDYKYCYRKAAVDLGNELVSRGLDLVYGGG 51 (220)
Q Consensus 8 ~~~~~~I~Vfgss~~~~~~~~~~~A~~lG~~lA~~g~~lVtGGg 51 (220)
++.+++|.|.|+++. ..+.+.+.|+++|+.|+....
T Consensus 7 ~~~~~~vlVtGa~g~--------iG~~la~~L~~~G~~V~~~~r 42 (274)
T PRK07775 7 HPDRRPALVAGASSG--------IGAATAIELAAAGFPVALGAR 42 (274)
T ss_pred CCCCCEEEEECCCch--------HHHHHHHHHHHCCCEEEEEeC
Confidence 455678999998762 346777888889998765443
No 159
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=35.05 E-value=1.2e+02 Score=25.75 Aligned_cols=69 Identities=19% Similarity=0.319 Sum_probs=39.8
Q ss_pred HHHHHhCCeEEEec--CCcccHHHHHHHHHHHHhccCCCcEEEEcCCCCchhHHHHHHHHHHcCCCCccccCcEEEcCCH
Q 039983 102 AEMARNADCFIALP--GGFGTLEELFEVTTWSQLGIHNKPVGLINVEGYYDPILNFIDKSIDEGFIYPSQRSIIVSASNA 179 (220)
Q Consensus 102 ~~~~~~sda~Ivlp--GG~GTL~El~~~~t~~qlg~~~kPIill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~d~ 179 (220)
..++..||++|.-. .|+|.- ++|+++ .++||+..+..+. .. . +.+.....++-.+|.
T Consensus 261 ~~~~~~~d~~l~~s~~e~~~~~--~lEa~a------~g~PvI~~~~~~~-~~---~---------i~~~~~g~~~~~~~~ 319 (364)
T cd03814 261 AAAYASADVFVFPSRTETFGLV--VLEAMA------SGLPVVAPDAGGP-AD---I---------VTDGENGLLVEPGDA 319 (364)
T ss_pred HHHHHhCCEEEECcccccCCcH--HHHHHH------cCCCEEEcCCCCc-hh---h---------hcCCcceEEcCCCCH
Confidence 45667899877542 233332 566775 5899998765432 22 1 111223444556677
Q ss_pred HHHHHHHHhhcC
Q 039983 180 KELVQKLEDYVP 191 (220)
Q Consensus 180 ee~~~~l~~~~~ 191 (220)
+++.+.|.+...
T Consensus 320 ~~l~~~i~~l~~ 331 (364)
T cd03814 320 EAFAAALAALLA 331 (364)
T ss_pred HHHHHHHHHHHc
Confidence 777877777643
No 160
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=35.05 E-value=84 Score=22.09 Aligned_cols=33 Identities=30% Similarity=0.614 Sum_probs=23.1
Q ss_pred CeEEEecCCcccHHHHHHHHHHHHhccCCCcEEEEcCCC
Q 039983 109 DCFIALPGGFGTLEELFEVTTWSQLGIHNKPVGLINVEG 147 (220)
Q Consensus 109 da~IvlpGG~GTL~El~~~~t~~qlg~~~kPIill~~~g 147 (220)
--+|.|| +|++||..+.. .+++.. |--+++.+|
T Consensus 19 GKvi~lP---~SleeLl~ia~-~kfg~~--~~~v~~~dg 51 (69)
T PF11834_consen 19 GKVIWLP---DSLEELLKIAS-EKFGFS--ATKVLNEDG 51 (69)
T ss_pred CEEEEcC---ccHHHHHHHHH-HHhCCC--ceEEEcCCC
Confidence 4688899 59999988765 566653 555666544
No 161
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=34.90 E-value=94 Score=23.65 Aligned_cols=32 Identities=16% Similarity=0.426 Sum_probs=23.5
Q ss_pred eEEEcCCCcChhHHHHHHHHhcCC----cEEEEeCCc
Q 039983 45 DLVYGGGSVGLMGLISEEVHRGGR----HVLGIIPKA 77 (220)
Q Consensus 45 ~lVtGGg~~GlM~ava~gA~~~gG----~viGv~P~~ 77 (220)
.||..||- |....+..+...... ..+|++|..
T Consensus 52 ~vvv~GGD-GTi~~vvn~l~~~~~~~~~~plgiiP~G 87 (124)
T smart00046 52 RVLVCGGD-GTVGWVLNALDKRELPLPEPPVAVLPLG 87 (124)
T ss_pred EEEEEccc-cHHHHHHHHHHhcccccCCCcEEEeCCC
Confidence 56666666 888888888876654 469999853
No 162
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=34.86 E-value=99 Score=25.93 Aligned_cols=66 Identities=18% Similarity=0.350 Sum_probs=38.8
Q ss_pred HHHHhCCeEEEecC--CcccHHHHHHHHHHHHhccCCCcEEEEcCCCCchhHHHHHHHHHHcCCCCccccCcEEEcCCHH
Q 039983 103 EMARNADCFIALPG--GFGTLEELFEVTTWSQLGIHNKPVGLINVEGYYDPILNFIDKSIDEGFIYPSQRSIIVSASNAK 180 (220)
Q Consensus 103 ~~~~~sda~IvlpG--G~GTL~El~~~~t~~qlg~~~kPIill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~d~e 180 (220)
.+...||++|.-.. |+|+. +.|++. .++|||.-+..+. .. +++. ...++-.+|++
T Consensus 264 ~~~~~adi~v~ps~~e~~~~~--~~Ea~a------~g~PvI~~~~~~~-~e---~~~~-----------~g~~~~~~~~~ 320 (365)
T cd03807 264 ALLNALDVFVLSSLSEGFPNV--LLEAMA------CGLPVVATDVGDN-AE---LVGD-----------TGFLVPPGDPE 320 (365)
T ss_pred HHHHhCCEEEeCCccccCCcH--HHHHHh------cCCCEEEcCCCCh-HH---Hhhc-----------CCEEeCCCCHH
Confidence 46678998775322 22332 566665 4899998765432 22 2111 23445557888
Q ss_pred HHHHHHHhhcC
Q 039983 181 ELVQKLEDYVP 191 (220)
Q Consensus 181 e~~~~l~~~~~ 191 (220)
++.+.+.+...
T Consensus 321 ~l~~~i~~l~~ 331 (365)
T cd03807 321 ALAEAIEALLA 331 (365)
T ss_pred HHHHHHHHHHh
Confidence 88888877643
No 163
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=34.82 E-value=1.8e+02 Score=26.12 Aligned_cols=71 Identities=13% Similarity=0.121 Sum_probs=43.2
Q ss_pred HHHHHHHHhCCeEEEe--cCCcccHHHHHHHHHHHHhccCCCcEEEEcCCCCchhHHHHHHHHHHcCCCCccccCcEEEc
Q 039983 99 QRKAEMARNADCFIAL--PGGFGTLEELFEVTTWSQLGIHNKPVGLINVEGYYDPILNFIDKSIDEGFIYPSQRSIIVSA 176 (220)
Q Consensus 99 ~Rk~~~~~~sda~Ivl--pGG~GTL~El~~~~t~~qlg~~~kPIill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~ 176 (220)
+....+...||++|.. +.++|. =+.|+++ .++|||.-+..+. . ++ +.......++-.
T Consensus 292 ~~~~~~l~~adv~v~~s~~e~~~~--~llEAmA------~G~PVIas~~~g~-~---e~---------i~~~~~G~lv~~ 350 (396)
T cd03818 292 DQYLALLQVSDVHVYLTYPFVLSW--SLLEAMA------CGCLVVGSDTAPV-R---EV---------ITDGENGLLVDF 350 (396)
T ss_pred HHHHHHHHhCcEEEEcCcccccch--HHHHHHH------CCCCEEEcCCCCc-h---hh---------cccCCceEEcCC
Confidence 3344566889998864 445443 2567776 5899998876432 2 21 222223334445
Q ss_pred CCHHHHHHHHHhhc
Q 039983 177 SNAKELVQKLEDYV 190 (220)
Q Consensus 177 ~d~ee~~~~l~~~~ 190 (220)
+|++++.+.|.+..
T Consensus 351 ~d~~~la~~i~~ll 364 (396)
T cd03818 351 FDPDALAAAVIELL 364 (396)
T ss_pred CCHHHHHHHHHHHH
Confidence 68898888887764
No 164
>PRK06756 flavodoxin; Provisional
Probab=34.78 E-value=92 Score=24.16 Aligned_cols=32 Identities=6% Similarity=0.106 Sum_probs=18.9
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeE
Q 039983 12 KRVCVFCGSSPDYKYCYRKAAVDLGNELVSRGLDL 46 (220)
Q Consensus 12 ~~I~Vfgss~~~~~~~~~~~A~~lG~~lA~~g~~l 46 (220)
++|.|+.+|..++ -.+.|+.+++.|.+.|+.+
T Consensus 2 mkv~IiY~S~tGn---Te~vA~~ia~~l~~~g~~v 33 (148)
T PRK06756 2 SKLVMIFASMSGN---TEEMADHIAGVIRETENEI 33 (148)
T ss_pred ceEEEEEECCCch---HHHHHHHHHHHHhhcCCeE
Confidence 4566666666553 2345677777776666543
No 165
>PRK05782 bifunctional sirohydrochlorin cobalt chelatase/precorrin-8X methylmutase; Validated
Probab=34.70 E-value=2.7e+02 Score=25.51 Aligned_cols=63 Identities=16% Similarity=0.231 Sum_probs=41.9
Q ss_pred CceEEEEc-CCCCCCCHHHHHHHHHHHHHHHHC-CCeEEEc----CCCcChhHHHHHHHHhcCCcEEEEeCCcc
Q 039983 11 FKRVCVFC-GSSPDYKYCYRKAAVDLGNELVSR-GLDLVYG----GGSVGLMGLISEEVHRGGRHVLGIIPKAL 78 (220)
Q Consensus 11 ~~~I~Vfg-ss~~~~~~~~~~~A~~lG~~lA~~-g~~lVtG----Gg~~GlM~ava~gA~~~gG~viGv~P~~~ 78 (220)
++.|-+.| ||| ++...+..++|++.+.++ ++.+.++ .-| -+.+++ +...+.|.+-|-|+|-++
T Consensus 6 ~~aiLLvgHGSR---dp~~~~~~~~La~~l~~~~~~~V~~aFLE~~eP-sl~eal-~~l~~~G~~~IvVvPlFL 74 (335)
T PRK05782 6 NTAIILIGHGSR---RETFNSDMEGMANYLKEKLGVPIYLTYNEFAEP-NWRSLL-NEIIKEGYRRVIIALAFL 74 (335)
T ss_pred CceEEEEecCCC---ChHHHHHHHHHHHHHHhccCCceEEEEeccCCC-CHHHHH-HHHHHCCCCEEEEecccc
Confidence 34555555 455 567778888888888654 6666555 556 676666 445566777788888665
No 166
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=34.47 E-value=78 Score=28.57 Aligned_cols=38 Identities=16% Similarity=0.133 Sum_probs=28.6
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEc
Q 039983 12 KRVCVFCGSSPDYKYCYRKAAVDLGNELVSRGLDLVYG 49 (220)
Q Consensus 12 ~~I~Vfgss~~~~~~~~~~~A~~lG~~lA~~g~~lVtG 49 (220)
.+|+|++|.....++.-...|+.+.+.|.+.||.++--
T Consensus 2 ~~i~vl~GG~S~E~~vSl~s~~~v~~~l~~~~~~v~~i 39 (347)
T PRK14572 2 AKIAVFFGGSSTEHSISIRTGCFICATLHTMGHSVKPI 39 (347)
T ss_pred cEEEEEECCCCcchHHHHHhHHHHHHHHhhcCCEEEEE
Confidence 46777665444446777789999999999999998643
No 167
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=34.34 E-value=1.1e+02 Score=26.65 Aligned_cols=32 Identities=25% Similarity=0.525 Sum_probs=24.2
Q ss_pred eEEEcCCCcChhHHHHHHHHhcCC-cEEEEeCCc
Q 039983 45 DLVYGGGSVGLMGLISEEVHRGGR-HVLGIIPKA 77 (220)
Q Consensus 45 ~lVtGGg~~GlM~ava~gA~~~gG-~viGv~P~~ 77 (220)
.||.-||- |-...+.++...... ..+|++|..
T Consensus 60 ~ivv~GGD-GTl~~v~~~l~~~~~~~~lgiiP~G 92 (293)
T TIGR00147 60 TVIAGGGD-GTINEVVNALIQLDDIPALGILPLG 92 (293)
T ss_pred EEEEECCC-ChHHHHHHHHhcCCCCCcEEEEcCc
Confidence 46666776 999999999877443 479999853
No 168
>cd00587 HCP_like The HCP family of iron-sulfur proteins includes hybrid cluster protein (HCP), acetyl-CoA synthase (ACS), and carbon monoxide dehydrogenase (CODH), all of which contain [Fe4-S4] metal clusters at their active sites. These proteins have a conserved alpha-beta rossman fold domain. HCP, formerly known as prismane, is thought to play a role in nitrogen metabolism but its specific function is unknown. Acetyl-CoA synthase (ACS), is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide and CoA.
Probab=34.32 E-value=85 Score=27.78 Aligned_cols=151 Identities=19% Similarity=0.231 Sum_probs=74.5
Q ss_pred CCceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEcCCCcChhHHHHHHHHhcC-----CcEEEEeCCcccccccC
Q 039983 10 RFKRVCVFCGSSPDYKYCYRKAAVDLGNELVSRGLDLVYGGGSVGLMGLISEEVHRGG-----RHVLGIIPKALMKKELT 84 (220)
Q Consensus 10 ~~~~I~Vfgss~~~~~~~~~~~A~~lG~~lA~~g~~lVtGGg~~GlM~ava~gA~~~g-----G~viGv~P~~~~~~e~~ 84 (220)
++|-|.+++|..... .+.+...++++.|-++++-+++.|+ +.+.. .++| |...|+ |..+ +..
T Consensus 93 ~I~Gv~~ivGC~n~~--~~~~~~~~iakeL~k~d~LVlt~GC--~a~~l-----~k~gl~~~~g~~~gi-P~vl-~~G-- 159 (258)
T cd00587 93 TIPGVALIVGCNNDK--KQDKAYADIAKELMKRGVMVLATGC--AAEAL-----LKLGLEDGAGILGGL-PIVF-DMG-- 159 (258)
T ss_pred CCCeEEEEEeCCCCC--ccchHHHHHHHHHHhCCEEEEecch--HHHHH-----HhcCCccccccccCC-Ccee-ecc--
Confidence 567788888765432 3334567899999999998888665 23322 2334 555554 3222 121
Q ss_pred CCCCceEeecCCHHHHHHHHHH---hCC--eEEEecCCcccHHHHHHH--HHHHHhccCCCcEEEEcC-CCCch-hHHHH
Q 039983 85 GVTLGEVKPVDHMHQRKAEMAR---NAD--CFIALPGGFGTLEELFEV--TTWSQLGIHNKPVGLINV-EGYYD-PILNF 155 (220)
Q Consensus 85 ~~~~~~~~~~~~~~~Rk~~~~~---~sd--a~IvlpGG~GTL~El~~~--~t~~qlg~~~kPIill~~-~g~~~-~l~~~ 155 (220)
.+++....-.+..|-..... ..| +++++|| -++|=.-+ +.+..+ +.|+++=-. ..|=+ .+.++
T Consensus 160 --sCvD~~~ai~~A~~lA~~fg~~~in~LP~~~~a~~---~~sqKAvAi~~g~l~l---GIpv~~Gp~~P~~~s~~v~~~ 231 (258)
T cd00587 160 --NCVDNSHAANLALKLANMFGGYDRSDLPAVASAPG---AYSQKAAAIATGAVFL---GVPVHVGPPLPVDGSIPVWKV 231 (258)
T ss_pred --cchhHHHHHHHHHHHHHHhCCCCcccCceEEEccc---hhhHHHHHHHHHHHHc---CCceeeCCCCccccChhHHHH
Confidence 22222222233344433322 334 6777776 33443332 333333 456654211 11222 22223
Q ss_pred HHHHHHcCCCCccccCcEEEcCCHHHHHHHH
Q 039983 156 IDKSIDEGFIYPSQRSIIVSASNAKELVQKL 186 (220)
Q Consensus 156 l~~~~~~g~i~~~~~~~i~~~~d~ee~~~~l 186 (220)
|.. +. ..-....+++..||++..+.+
T Consensus 232 L~~----~~-~~~~g~~~~~~~dp~~~a~~i 257 (258)
T cd00587 232 LTP----EA-SDNEGGYFISVTDYQDIVQKA 257 (258)
T ss_pred HHh----cc-hhccCcEEEecCCHHHHHHHh
Confidence 221 11 112234577788999888764
No 169
>PRK14138 NAD-dependent deacetylase; Provisional
Probab=33.99 E-value=1.3e+02 Score=26.06 Aligned_cols=71 Identities=7% Similarity=0.079 Sum_probs=44.0
Q ss_pred HHHHHHHHHhCCeEEEecCCcccHHHHHHHHHHHHh-ccCCCcEEEEcCCC-CchhHHHHHHHHHHcCCCCccccCcEEE
Q 039983 98 HQRKAEMARNADCFIALPGGFGTLEELFEVTTWSQL-GIHNKPVGLINVEG-YYDPILNFIDKSIDEGFIYPSQRSIIVS 175 (220)
Q Consensus 98 ~~Rk~~~~~~sda~IvlpGG~GTL~El~~~~t~~ql-g~~~kPIill~~~g-~~~~l~~~l~~~~~~g~i~~~~~~~i~~ 175 (220)
.+|-...++.+|.+|+++ |=-.+.-+..+... ...+.|++++|.+. .++. ..-+.+
T Consensus 169 ~~~~~~~~~~aDl~lviG----TSl~V~pa~~l~~~~~~~g~~~i~iN~~~t~~d~------------------~~~~~i 226 (244)
T PRK14138 169 LREAIRLSSKASLMIVMG----SSLVVYPAAELPLITVRSGGKLVIVNLGETPLDD------------------IATLKY 226 (244)
T ss_pred HHHHHHHHhcCCEEEEeC----cCCeeecHhHHHHHHHHcCCeEEEEcCCCCCCCc------------------ceeEEE
Confidence 466667778899999853 32222223333222 23578999999631 2221 123678
Q ss_pred cCCHHHHHHHHHhhc
Q 039983 176 ASNAKELVQKLEDYV 190 (220)
Q Consensus 176 ~~d~ee~~~~l~~~~ 190 (220)
..++.|++..|.++.
T Consensus 227 ~~~~~~~l~~l~~~~ 241 (244)
T PRK14138 227 NMDVVEFANRVMSEG 241 (244)
T ss_pred eCCHHHHHHHHHHHh
Confidence 889999999998754
No 170
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=33.81 E-value=86 Score=27.74 Aligned_cols=34 Identities=21% Similarity=0.111 Sum_probs=25.6
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEE
Q 039983 12 KRVCVFCGSSPDYKYCYRKAAVDLGNELVSRGLDLVY 48 (220)
Q Consensus 12 ~~I~Vfgss~~~~~~~~~~~A~~lG~~lA~~g~~lVt 48 (220)
|+|+|+.-.. .+...+.++++.++|.++|+.+..
T Consensus 1 m~v~iv~~~~---k~~~~~~~~~I~~~L~~~g~~v~v 34 (277)
T PRK03708 1 MRFGIVARRD---KEEALKLAYRVYDFLKVSGYEVVV 34 (277)
T ss_pred CEEEEEecCC---CHHHHHHHHHHHHHHHHCCCEEEE
Confidence 4588885433 356667888999999999998776
No 171
>PF01182 Glucosamine_iso: Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase; InterPro: IPR006148 This domain is characteristic of the enzymes 6-phosphogluconolactonase (3.1.1.31 from EC), Glucosamine-6-phosphate isomerase (3.5.99.6 from EC), and Galactosamine-6-phosphate isomerase. 6-Phosphogluconolactonase is the enzyme responsible for the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate, the second step in the pentose phosphate pathway. Glucosamine-6-phosphate isomerase (or Glucosamine 6-phosphate deaminase) is the enzyme responsible for the conversion of D-glucosamine 6-phosphate into D-fructose 6-phosphate []. It is the last specific step in the pathway for N-acetylglucosamine (GlcNAC) utilization in bacteria such as Escherichia coli (gene nagB) or in fungi such as Candida albicans (gene NAG1).; GO: 0005975 carbohydrate metabolic process; PDB: 3CSS_A 3CH7_A 1Y89_B 3TX2_A 2BKX_B 2BKV_B 3E15_B 1HOR_B 1JT9_A 1HOT_A ....
Probab=33.76 E-value=1.3e+02 Score=24.83 Aligned_cols=83 Identities=23% Similarity=0.242 Sum_probs=45.6
Q ss_pred HHHHhCCeEEEecCCcccHHHHHHHHHHHH-hccCCCcEEEEcCCCCch------hHHHHHH-HHHHcCCCCccccCcEE
Q 039983 103 EMARNADCFIALPGGFGTLEELFEVTTWSQ-LGIHNKPVGLINVEGYYD------PILNFID-KSIDEGFIYPSQRSIIV 174 (220)
Q Consensus 103 ~~~~~sda~IvlpGG~GTL~El~~~~t~~q-lg~~~kPIill~~~g~~~------~l~~~l~-~~~~~g~i~~~~~~~i~ 174 (220)
.+.+...+.|+|+||. |...+++.+.-.. ....-..|.+++.+.+|= .-..+++ .+.+..-|++ +.++
T Consensus 16 ~i~~~~~~~i~LsgGs-tp~~~y~~L~~~~~~~i~w~~v~~~~~DEr~v~~~~~~Sn~~~~~~~l~~~~~i~~---~~i~ 91 (199)
T PF01182_consen 16 AIAERGRAVIALSGGS-TPKPLYQELAKLHKERIDWSRVHFFNVDERVVPPDDPDSNYRMLREHLLDPLPIPP---ENIH 91 (199)
T ss_dssp HHHHCSSEEEEE--SC-THHHHHHHHHHHHHTCSCGGGEEEEESEEESSTTTSTTSHHHHHHHHTGGGSGGGG---GGEE
T ss_pred HHHHCCCEEEEEcCCH-HHHHHHHHHhhhccccCChhHeEEEeCcccccCCCCCccHHHHHHHHhhccCCCCc---ceEE
Confidence 3456688999999985 5557777776543 122336788888877771 2223333 2333322333 2343
Q ss_pred E----cCCHHHHHHHHHhh
Q 039983 175 S----ASNAKELVQKLEDY 189 (220)
Q Consensus 175 ~----~~d~ee~~~~l~~~ 189 (220)
. .+|+++..+.+++.
T Consensus 92 ~~~~~~~~~~~~~~~y~~~ 110 (199)
T PF01182_consen 92 PIDGEADDPEEAAERYEQE 110 (199)
T ss_dssp TSSTTTSSHHHHHHHHHHH
T ss_pred eCCCCCCCHHHHHHHHHHH
Confidence 2 35677777666654
No 172
>TIGR02153 gatD_arch glutamyl-tRNA(Gln) amidotransferase, subunit D. This peptide is found only in the Archaea. It is part of a heterodimer, with GatE (TIGR00134), that acts as an amidotransferase on misacylated Glu-tRNA(Gln) to produce Gln-tRNA(Gln). The analogous amidotransferase found in bacteria is the GatABC system, although GatABC homologs in the Archaea appear to act instead on Asp-tRNA(Asn).
Probab=33.52 E-value=1.1e+02 Score=28.86 Aligned_cols=48 Identities=23% Similarity=0.184 Sum_probs=34.0
Q ss_pred CCeEEEecCCcccHHHHHHHHHHHHhccCCCcEEEEcC-----CCCchhHHHHHH
Q 039983 108 ADCFIALPGGFGTLEELFEVTTWSQLGIHNKPVGLINV-----EGYYDPILNFID 157 (220)
Q Consensus 108 sda~IvlpGG~GTL~El~~~~t~~qlg~~~kPIill~~-----~g~~~~l~~~l~ 157 (220)
.|+|||.-| .-||+|-+.++.++--+ .+|||||.+. .--.|...+++.
T Consensus 140 ~dGvVVtHG-TDTM~yTA~aLs~~l~~-~~kPVVlTGAqrp~~~~~sDa~~NL~~ 192 (404)
T TIGR02153 140 ADGVVVAHG-TDTMAYTAAALSFMFET-LPVPVVLVGAQRSSDRPSSDAALNLIC 192 (404)
T ss_pred CCcEEEecC-ChhHHHHHHHHHHHhhC-CCCCEEEECCCCCCCCCCchHHHHHHH
Confidence 689998876 89999998887764432 3799999864 123455566554
No 173
>PRK05866 short chain dehydrogenase; Provisional
Probab=33.40 E-value=2e+02 Score=24.89 Aligned_cols=54 Identities=19% Similarity=0.326 Sum_probs=28.1
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEcCCCcChhHHHHHHHHhcCCcEEEE
Q 039983 12 KRVCVFCGSSPDYKYCYRKAAVDLGNELVSRGLDLVYGGGSVGLMGLISEEVHRGGRHVLGI 73 (220)
Q Consensus 12 ~~I~Vfgss~~~~~~~~~~~A~~lG~~lA~~g~~lVtGGg~~GlM~ava~gA~~~gG~viGv 73 (220)
++|-|.|+++- ..+.+++.|+++|+.|+..+....-.+...+...+.++.+..+
T Consensus 41 k~vlItGasgg--------IG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~ 94 (293)
T PRK05866 41 KRILLTGASSG--------IGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGGDAMAV 94 (293)
T ss_pred CEEEEeCCCcH--------HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEE
Confidence 56777776652 3456666667778777665544222233333222334444433
No 174
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=33.23 E-value=2.2e+02 Score=26.13 Aligned_cols=69 Identities=22% Similarity=0.336 Sum_probs=42.3
Q ss_pred HHHHHhCCeEEEec--------CCcccHHHHHHHHHHHHhccCCCcEEEEcCCCCchhHHHHHHHHHHcCCCCccccCcE
Q 039983 102 AEMARNADCFIALP--------GGFGTLEELFEVTTWSQLGIHNKPVGLINVEGYYDPILNFIDKSIDEGFIYPSQRSII 173 (220)
Q Consensus 102 ~~~~~~sda~Ivlp--------GG~GTL~El~~~~t~~qlg~~~kPIill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i 173 (220)
..+...||++|.-. -|+|. =+.|++. .++|||.-+..|. . ++ +.......+
T Consensus 293 ~~~l~~aDv~v~pS~~~~~g~~Eg~p~--~llEAma------~G~PVI~t~~~g~-~---E~---------v~~~~~G~l 351 (406)
T PRK15427 293 KAMLDDADVFLLPSVTGADGDMEGIPV--ALMEAMA------VGIPVVSTLHSGI-P---EL---------VEADKSGWL 351 (406)
T ss_pred HHHHHhCCEEEECCccCCCCCccCccH--HHHHHHh------CCCCEEEeCCCCc-h---hh---------hcCCCceEE
Confidence 45678899998642 23433 3677776 5899998876542 1 21 112223344
Q ss_pred EEcCCHHHHHHHHHhhcC
Q 039983 174 VSASNAKELVQKLEDYVP 191 (220)
Q Consensus 174 ~~~~d~ee~~~~l~~~~~ 191 (220)
+-.+|++++.+.|.+...
T Consensus 352 v~~~d~~~la~ai~~l~~ 369 (406)
T PRK15427 352 VPENDAQALAQRLAAFSQ 369 (406)
T ss_pred eCCCCHHHHHHHHHHHHh
Confidence 445688888888887654
No 175
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=33.10 E-value=80 Score=27.45 Aligned_cols=37 Identities=16% Similarity=0.161 Sum_probs=25.3
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEE
Q 039983 12 KRVCVFCGSSPDYKYCYRKAAVDLGNELVSRGLDLVY 48 (220)
Q Consensus 12 ~~I~Vfgss~~~~~~~~~~~A~~lG~~lA~~g~~lVt 48 (220)
++|+|.+|+.......-.+.++.+-+.|.+.|+.++.
T Consensus 5 ~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~ 41 (304)
T PRK01372 5 GKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHP 41 (304)
T ss_pred cEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEE
Confidence 4677776544333333345789999999999999754
No 176
>PRK08264 short chain dehydrogenase; Validated
Probab=33.07 E-value=2.5e+02 Score=22.83 Aligned_cols=29 Identities=24% Similarity=0.331 Sum_probs=19.1
Q ss_pred CeEEEcCCCcChhHHHHHHHHhcCC-cEEEE
Q 039983 44 LDLVYGGGSVGLMGLISEEVHRGGR-HVLGI 73 (220)
Q Consensus 44 ~~lVtGGg~~GlM~ava~gA~~~gG-~viGv 73 (220)
..+|+||.+ |+=.++++...+.|- .|+.+
T Consensus 8 ~vlItGgsg-~iG~~la~~l~~~G~~~V~~~ 37 (238)
T PRK08264 8 VVLVTGANR-GIGRAFVEQLLARGAAKVYAA 37 (238)
T ss_pred EEEEECCCc-hHHHHHHHHHHHCCcccEEEE
Confidence 456677766 777777777766665 65555
No 177
>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6.2.1.4 from EC (GDP-forming) and 6.2.1.5 from EC (ADP-forming)) [, ]. This domain can also be found in ATP citrate synthase (2.3.3.8 from EC) and malate-CoA ligase (6.2.1.9 from EC). Some members of the domain utilise ATP others use GTP.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3DMY_B 3MWE_B 3PFF_A 3MWD_B 2YV1_A 1EUC_A 2FP4_A 1EUD_A 2FPI_A 2FPG_A ....
Probab=33.00 E-value=2.3e+02 Score=22.91 Aligned_cols=50 Identities=16% Similarity=0.129 Sum_probs=30.0
Q ss_pred cCCHHHHHHHHHHhCC---eEEEecCCcccHHHHHHHHHHHHhc-c---CCCcEEEE
Q 039983 94 VDHMHQRKAEMARNAD---CFIALPGGFGTLEELFEVTTWSQLG-I---HNKPVGLI 143 (220)
Q Consensus 94 ~~~~~~Rk~~~~~~sd---a~IvlpGG~GTL~El~~~~t~~qlg-~---~~kPIill 143 (220)
.+.+.+|-..+.+..+ .+|.+-+|+|.-++....+.-..-. . ..+|||..
T Consensus 58 ~~~~~~~l~~~~~Dp~v~vIlvd~~~G~g~~~~~A~~l~~a~~~~~~~~~~~pvVa~ 114 (153)
T PF00549_consen 58 PSTRNEALEIEAADPEVKVILVDIVGGIGSCEDPAAGLIPAIKEAKAEGRKKPVVAR 114 (153)
T ss_dssp SSHHHHHHHHHHTSTTESEEEEEEESSSSSHHHHHHHHHHHHSHCTHTTT-SEEEEE
T ss_pred HHHHHHHHHHHhcCCCccEEEEEeccccCchHHHHHHHHHHHHhccccCCCCcEEEE
Confidence 4444555555544433 3555579999999988876533222 2 46798865
No 178
>PLN02945 nicotinamide-nucleotide adenylyltransferase/nicotinate-nucleotide adenylyltransferase
Probab=32.98 E-value=1.1e+02 Score=26.14 Aligned_cols=43 Identities=21% Similarity=0.181 Sum_probs=32.3
Q ss_pred hhhcCCCceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEE
Q 039983 5 KEAKSRFKRVCVFCGSSPDYKYCYRKAAVDLGNELVSRGLDLV 47 (220)
Q Consensus 5 ~~~~~~~~~I~Vfgss~~~~~~~~~~~A~~lG~~lA~~g~~lV 47 (220)
-+.+.+...|+|||||=...+-.+...|+..-+.+...++.+|
T Consensus 15 ~~~~~~~~~v~i~GGSFdP~H~gHl~ia~~a~~~l~~d~~~~v 57 (236)
T PLN02945 15 NSTGPRTRVVLVATGSFNPPTYMHLRMFELARDALMSEGYHVL 57 (236)
T ss_pred cCccCCceEEEEEcCCCCCCcHHHHHHHHHHHHHHhhcCcEEE
Confidence 3556778889999999987787777777777777765565444
No 179
>TIGR01752 flav_long flavodoxin, long chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli.
Probab=32.81 E-value=1.1e+02 Score=24.59 Aligned_cols=20 Identities=30% Similarity=0.763 Sum_probs=10.1
Q ss_pred hHHHHHHHHhcCCcEEEEeC
Q 039983 56 MGLISEEVHRGGRHVLGIIP 75 (220)
Q Consensus 56 M~ava~gA~~~gG~viGv~P 75 (220)
|+.+.+-..+.|..++|-.+
T Consensus 100 ~~~l~~~l~~~G~~~ig~~~ 119 (167)
T TIGR01752 100 MGILYDKIKARGAKVVGFWP 119 (167)
T ss_pred HHHHHHHHHHcCCeEEceec
Confidence 44444444445666666543
No 180
>PRK05333 NAD-dependent deacetylase; Provisional
Probab=32.77 E-value=1e+02 Score=27.20 Aligned_cols=70 Identities=13% Similarity=0.174 Sum_probs=45.0
Q ss_pred HHHHHHHHHhCCeEEEecCCcccHHHHHHHHHHHHh-ccCCCcEEEEcCCC-CchhHHHHHHHHHHcCCCCccccCcEEE
Q 039983 98 HQRKAEMARNADCFIALPGGFGTLEELFEVTTWSQL-GIHNKPVGLINVEG-YYDPILNFIDKSIDEGFIYPSQRSIIVS 175 (220)
Q Consensus 98 ~~Rk~~~~~~sda~IvlpGG~GTL~El~~~~t~~ql-g~~~kPIill~~~g-~~~~l~~~l~~~~~~g~i~~~~~~~i~~ 175 (220)
..|....++.+|.+|+ +||--.+.-+..+.+. ..++.|++++|.+. .++. .-.+.+
T Consensus 205 ~~~a~~~~~~~Dlllv----vGTSl~V~p~~~~~~~a~~~g~~~i~IN~~~t~~~~------------------~~~~~i 262 (285)
T PRK05333 205 VAAARAALDAADAVLV----VGSSLMVYSGYRFCVWAAQQGKPIAALNLGRTRADP------------------LLTLKV 262 (285)
T ss_pred HHHHHHHHhcCCEEEE----ECcCceecchhhhHHHHHHCCCeEEEECCCCCCCCc------------------ceeEEE
Confidence 4566667788998888 6665555444332222 23567999999743 1111 113677
Q ss_pred cCCHHHHHHHHHhh
Q 039983 176 ASNAKELVQKLEDY 189 (220)
Q Consensus 176 ~~d~ee~~~~l~~~ 189 (220)
..+..+++..|.+-
T Consensus 263 ~g~~~evL~~l~~~ 276 (285)
T PRK05333 263 EASCAQALAALVAR 276 (285)
T ss_pred eCCHHHHHHHHHHH
Confidence 88999999999664
No 181
>cd00458 SugarP_isomerase SugarP_isomerase: Sugar Phosphate Isomerase family; includes type A ribose 5-phosphate isomerase (RPI_A), glucosamine-6-phosphate (GlcN6P) deaminase, and 6-phosphogluconolactonase (6PGL). RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium, the last step of the metabolic pathway of N-acetyl-D-glucosamine-6-phosphate. 6PGL converts 6-phosphoglucono-1,5-lactone to 6-phosphogluconate, the second step of the oxidative phase of the pentose phosphate pathway.
Probab=32.68 E-value=2.6e+02 Score=22.42 Aligned_cols=45 Identities=13% Similarity=0.072 Sum_probs=27.3
Q ss_pred HHHhCCeEEEecCCcccHHHHHHHHHHHHhccCCCcEEEEcCCCCc
Q 039983 104 MARNADCFIALPGGFGTLEELFEVTTWSQLGIHNKPVGLINVEGYY 149 (220)
Q Consensus 104 ~~~~sda~IvlpGG~GTL~El~~~~t~~qlg~~~kPIill~~~g~~ 149 (220)
+.+...+.|+|+||. |..++++.+........-+.|.++..+.+|
T Consensus 16 ~~~~~~~~i~lsgGs-Tp~~~y~~L~~~~~~~~w~~v~~f~~DEr~ 60 (169)
T cd00458 16 LEEKDDMVIGLGTGS-TPAYFYKLLGEKLKRGEISDIVGFPTDERY 60 (169)
T ss_pred HHhCCCEEEEECCCc-cHHHHHHHHHhhhhhCCccceEEEECcccc
Confidence 334567888888874 666777776533221112457777776665
No 182
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=32.62 E-value=84 Score=28.14 Aligned_cols=37 Identities=16% Similarity=0.111 Sum_probs=27.3
Q ss_pred CceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEE
Q 039983 11 FKRVCVFCGSSPDYKYCYRKAAVDLGNELVSRGLDLV 47 (220)
Q Consensus 11 ~~~I~Vfgss~~~~~~~~~~~A~~lG~~lA~~g~~lV 47 (220)
+++|+|.+|......+.-...++.+.+.|.+.||.++
T Consensus 3 ~~~i~vl~GG~S~E~~vSl~s~~~v~~~l~~~~~~~~ 39 (333)
T PRK01966 3 KMRVALLFGGRSAEHEVSLVSAKSVLKALDKEKYEVV 39 (333)
T ss_pred CcEEEEEeCCCCCcchhhHHHHHHHHHHhcccCCEEE
Confidence 3457776654444466667889999999999999875
No 183
>cd03415 CbiX_CbiC Archaeal sirohydrochlorin cobalt chelatase (CbiX) single domain. Proteins in this subgroup contain a single CbiX domain N-terminal to a precorrin-8X methylmutase (CbiC) domain. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, while CbiC catalyzes the conversion of cobalt-precorrin 8 to cobyrinic acid by methyl rearrangement. Both CbiX and CbiC are involved in vitamin B12 biosynthesis.
Probab=32.55 E-value=2.4e+02 Score=21.90 Aligned_cols=58 Identities=16% Similarity=0.223 Sum_probs=37.0
Q ss_pred EEc-CCCCCCCHHHHHHHHHHHHHHHHC-CCeEEEc----CCCcChhHHHHHHHHhcCCcEEEEeCCcc
Q 039983 16 VFC-GSSPDYKYCYRKAAVDLGNELVSR-GLDLVYG----GGSVGLMGLISEEVHRGGRHVLGIIPKAL 78 (220)
Q Consensus 16 Vfg-ss~~~~~~~~~~~A~~lG~~lA~~-g~~lVtG----Gg~~GlM~ava~gA~~~gG~viGv~P~~~ 78 (220)
+.| ||+ ++...+..++|++.+.++ ++.+-++ ..| -+-+++. ...+.|..-|-|+|-++
T Consensus 5 lvgHGSR---~~~~~~~~~~la~~l~~~~~~~v~~afle~~~P-~l~~~l~-~l~~~G~~~ivVvPlFL 68 (125)
T cd03415 5 IITHGSR---RNTFNEDMEEWAAYLERKLGVPVYLTYNEYAEP-NWRDLLN-ELLSEGYGHIIIALAFL 68 (125)
T ss_pred EEecCCC---ChHHHHHHHHHHHHHHhccCCceEEEEeecCCC-CHHHHHH-HHHHCCCCEEEEehhhc
Confidence 344 455 567778888888888643 5555444 445 5555554 45566777788888543
No 184
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=32.35 E-value=2.9e+02 Score=24.71 Aligned_cols=62 Identities=19% Similarity=0.256 Sum_probs=39.8
Q ss_pred CCCceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeE-----------------------------------EEcCCCc
Q 039983 9 SRFKRVCVFCGSSPDYKYCYRKAAVDLGNELVSRGLDL-----------------------------------VYGGGSV 53 (220)
Q Consensus 9 ~~~~~I~Vfgss~~~~~~~~~~~A~~lG~~lA~~g~~l-----------------------------------VtGGg~~ 53 (220)
+.+++|+|+.-.. .+...+.+.++.++|.++|+.+ |+=||-
T Consensus 3 ~~~~~i~ii~~~~---~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~lGGD- 78 (296)
T PRK04539 3 SPFHNIGIVTRPN---TPDIQDTAHTLITFLKQHGFTVYLDEVGIKEGCIYTQDTVGCHIVNKTELGQYCDLVAVLGGD- 78 (296)
T ss_pred CCCCEEEEEecCC---CHHHHHHHHHHHHHHHHCCCEEEEecccccccchhccccccccccchhhcCcCCCEEEEECCc-
Confidence 3467899997543 4566677888888776555332 233444
Q ss_pred ChhHHHHHHHHhcCCcEEEEe
Q 039983 54 GLMGLISEEVHRGGRHVLGII 74 (220)
Q Consensus 54 GlM~ava~gA~~~gG~viGv~ 74 (220)
|-|=.+++-+...+-.++||-
T Consensus 79 GT~L~aa~~~~~~~~PilGIN 99 (296)
T PRK04539 79 GTFLSVAREIAPRAVPIIGIN 99 (296)
T ss_pred HHHHHHHHHhcccCCCEEEEe
Confidence 777666666655666788874
No 185
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=32.32 E-value=79 Score=28.42 Aligned_cols=36 Identities=14% Similarity=0.241 Sum_probs=27.7
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEE
Q 039983 12 KRVCVFCGSSPDYKYCYRKAAVDLGNELVSRGLDLV 47 (220)
Q Consensus 12 ~~I~Vfgss~~~~~~~~~~~A~~lG~~lA~~g~~lV 47 (220)
++|+|.+|.....++.-...|+.+.+.|.+.+|.++
T Consensus 4 ~~i~vl~GG~S~E~evSl~s~~~v~~~l~~~~~~v~ 39 (343)
T PRK14568 4 IKVGILFGGCSEEHPVSVKSAIEVARNLDTEKYEPF 39 (343)
T ss_pred cEEEEEECCCCCchHHHHHhHHHHHHhhcccCCeEE
Confidence 467776654444567777899999999999999986
No 186
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=32.27 E-value=93 Score=23.83 Aligned_cols=33 Identities=18% Similarity=0.299 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEE
Q 039983 12 KRVCVFCGSSPDYKYCYRKAAVDLGNELVSRGLDLV 47 (220)
Q Consensus 12 ~~I~Vfgss~~~~~~~~~~~A~~lG~~lA~~g~~lV 47 (220)
|.|+|++...- .+ -...|..|++.||+.|..++
T Consensus 1 k~i~v~s~~~g-~G--~t~~a~~lA~~la~~~~~Vl 33 (157)
T PF13614_consen 1 KVIAVWSPKGG-VG--KTTLALNLAAALARKGKKVL 33 (157)
T ss_dssp EEEEEEESSTT-SS--HHHHHHHHHHHHHHTTT-EE
T ss_pred CEEEEECCCCC-CC--HHHHHHHHHHHHHhcCCCeE
Confidence 46788885431 12 23467889999998886543
No 187
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=32.13 E-value=57 Score=27.79 Aligned_cols=36 Identities=19% Similarity=0.042 Sum_probs=19.7
Q ss_pred ceEEEEcCCCCC-CCHHHHHHHHHHHHHHHHCCCeEEE
Q 039983 12 KRVCVFCGSSPD-YKYCYRKAAVDLGNELVSRGLDLVY 48 (220)
Q Consensus 12 ~~I~Vfgss~~~-~~~~~~~~A~~lG~~lA~~g~~lVt 48 (220)
++|.|+.++... ..-+..| +..--..|.+.|+.+..
T Consensus 2 kkVlills~~~~~dG~e~~E-~~~P~~~L~~aG~~V~~ 38 (217)
T PRK11780 2 KKIAVILSGCGVYDGSEIHE-AVLTLLALDRAGAEAVC 38 (217)
T ss_pred CEEEEEEccCCCCCCEehhH-HHHHHHHHHHCCCEEEE
Confidence 468888763321 1222223 23445567788988765
No 188
>PRK13059 putative lipid kinase; Reviewed
Probab=32.04 E-value=95 Score=27.31 Aligned_cols=36 Identities=17% Similarity=0.424 Sum_probs=25.9
Q ss_pred HHCCC-eEEEcCCCcChhHHHHHHHHhcC-CcEEEEeCC
Q 039983 40 VSRGL-DLVYGGGSVGLMGLISEEVHRGG-RHVLGIIPK 76 (220)
Q Consensus 40 A~~g~-~lVtGGg~~GlM~ava~gA~~~g-G~viGv~P~ 76 (220)
++.++ .||..||- |--..++.+....+ ...+||+|.
T Consensus 53 ~~~~~d~vi~~GGD-GTv~evv~gl~~~~~~~~lgviP~ 90 (295)
T PRK13059 53 IDESYKYILIAGGD-GTVDNVVNAMKKLNIDLPIGILPV 90 (295)
T ss_pred hhcCCCEEEEECCc-cHHHHHHHHHHhcCCCCcEEEECC
Confidence 34454 45556666 99999999988765 466999995
No 189
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=31.90 E-value=3.2e+02 Score=23.25 Aligned_cols=35 Identities=26% Similarity=0.305 Sum_probs=22.6
Q ss_pred CCCeEEEcCCCcChhHHHHHHHHh-cCCcEEEEeCC
Q 039983 42 RGLDLVYGGGSVGLMGLISEEVHR-GGRHVLGIIPK 76 (220)
Q Consensus 42 ~g~~lVtGGg~~GlM~ava~gA~~-~gG~viGv~P~ 76 (220)
.|..+|+|-|.+|+++-.--.=+. -|-.+.-|-|.
T Consensus 39 ~gkv~V~G~GkSG~Igkk~Aa~L~s~G~~a~fv~p~ 74 (202)
T COG0794 39 KGKVFVTGVGKSGLIGKKFAARLASTGTPAFFVGPA 74 (202)
T ss_pred CCcEEEEcCChhHHHHHHHHHHHHccCCceEEecCc
Confidence 799999999999999764322222 34454444443
No 190
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=31.87 E-value=62 Score=24.55 Aligned_cols=31 Identities=19% Similarity=0.186 Sum_probs=17.7
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEE
Q 039983 12 KRVCVFCGSSPDYKYCYRKAAVDLGNELVSRGLDLV 47 (220)
Q Consensus 12 ~~I~Vfgss~~~~~~~~~~~A~~lG~~lA~~g~~lV 47 (220)
|+|+|.|.|..... .++.+-+.|.++|+.++
T Consensus 1 ksiAVvGaS~~~~~-----~g~~v~~~l~~~G~~v~ 31 (116)
T PF13380_consen 1 KSIAVVGASDNPGK-----FGYRVLRNLKAAGYEVY 31 (116)
T ss_dssp -EEEEET--SSTTS-----HHHHHHHHHHHTT-EEE
T ss_pred CEEEEEcccCCCCC-----hHHHHHHHHHhCCCEEE
Confidence 57999998874322 24566666666887765
No 191
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=31.87 E-value=2.6e+02 Score=24.96 Aligned_cols=29 Identities=14% Similarity=0.135 Sum_probs=18.3
Q ss_pred eEEEcCCCcChhHHHHHHHHhcCCcEEEEe
Q 039983 45 DLVYGGGSVGLMGLISEEVHRGGRHVLGII 74 (220)
Q Consensus 45 ~lVtGGg~~GlM~ava~gA~~~gG~viGv~ 74 (220)
.+|+-||- |-+-.+++.....+-.++||-
T Consensus 60 ~vi~~GGD-GT~l~~~~~~~~~~~pv~gin 88 (305)
T PRK02645 60 LAIVLGGD-GTVLAAARHLAPHDIPILSVN 88 (305)
T ss_pred EEEEECCc-HHHHHHHHHhccCCCCEEEEe
Confidence 34455666 888887777765555555553
No 192
>TIGR01198 pgl 6-phosphogluconolactonase. This enzyme of the pentose phosphate pathway is often found as a part of a multifunctional protein with
Probab=31.76 E-value=3e+02 Score=23.41 Aligned_cols=42 Identities=21% Similarity=0.225 Sum_probs=28.6
Q ss_pred HHhCCeEEEecCCcccHHHHHHHHHHHHhccCCCcEEEEcCCCCc
Q 039983 105 ARNADCFIALPGGFGTLEELFEVTTWSQLGIHNKPVGLINVEGYY 149 (220)
Q Consensus 105 ~~~sda~IvlpGG~GTL~El~~~~t~~qlg~~~kPIill~~~g~~ 149 (220)
.+...+.|+|+||. |...+++.+.-. ...-..|.++..+.+|
T Consensus 25 ~~~~~~~lalsGGs-tp~~~y~~L~~~--~i~w~~v~~f~~DER~ 66 (233)
T TIGR01198 25 AERGQFSLALSGGR-SPIALLEALAAQ--PLDWSRIHLFLGDERY 66 (233)
T ss_pred HhcCcEEEEECCCc-cHHHHHHHHhhC--CCCcceEEEEEecccc
Confidence 34677899999985 777888888743 2223556666666666
No 193
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=31.75 E-value=3.7e+02 Score=23.81 Aligned_cols=31 Identities=19% Similarity=0.181 Sum_probs=20.3
Q ss_pred CCeEEEcCCCcChhHHHHHHHHhcCCc-EEEEeC
Q 039983 43 GLDLVYGGGSVGLMGLISEEVHRGGRH-VLGIIP 75 (220)
Q Consensus 43 g~~lVtGGg~~GlM~ava~gA~~~gG~-viGv~P 75 (220)
...+|+|+|+.|++ +..-|+..|.. |+.+..
T Consensus 178 ~~VlV~G~g~vG~~--a~~~ak~~G~~~Vi~~~~ 209 (358)
T TIGR03451 178 DSVAVIGCGGVGDA--AIAGAALAGASKIIAVDI 209 (358)
T ss_pred CEEEEECCCHHHHH--HHHHHHHcCCCeEEEEcC
Confidence 45688887655554 45667777875 777743
No 194
>PRK13937 phosphoheptose isomerase; Provisional
Probab=31.65 E-value=1.2e+02 Score=24.88 Aligned_cols=32 Identities=25% Similarity=0.185 Sum_probs=27.0
Q ss_pred CHHHHHHHHHHHHHHHHCCCeEEEcCCCcChh
Q 039983 25 KYCYRKAAVDLGNELVSRGLDLVYGGGSVGLM 56 (220)
Q Consensus 25 ~~~~~~~A~~lG~~lA~~g~~lVtGGg~~GlM 56 (220)
.+...+.+.++.+.|.+.+...++|-|..++.
T Consensus 21 ~~~l~~aa~~i~~~l~~a~rI~i~G~G~S~~~ 52 (188)
T PRK13937 21 LEAIAKVAEALIEALANGGKILLCGNGGSAAD 52 (188)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCcHhHHH
Confidence 46778889999999999999999999885553
No 195
>PRK08105 flavodoxin; Provisional
Probab=31.62 E-value=1e+02 Score=24.34 Aligned_cols=18 Identities=11% Similarity=0.126 Sum_probs=8.4
Q ss_pred hhHHHHHHHHhcCCcEEE
Q 039983 55 LMGLISEEVHRGGRHVLG 72 (220)
Q Consensus 55 lM~ava~gA~~~gG~viG 72 (220)
.+..+.+-..+.|+..++
T Consensus 103 ~~~~ld~~l~~lGa~~v~ 120 (149)
T PRK08105 103 AGKQFDALLQEQGAKRVG 120 (149)
T ss_pred HHHHHHHHHHHCCCeEee
Confidence 333333333445666555
No 196
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=31.58 E-value=70 Score=26.11 Aligned_cols=40 Identities=35% Similarity=0.355 Sum_probs=21.7
Q ss_pred HhCCeEEEecCC-----cccHHHHHHHHHHHHh-ccCCCcEEEEcC
Q 039983 106 RNADCFIALPGG-----FGTLEELFEVTTWSQL-GIHNKPVGLINV 145 (220)
Q Consensus 106 ~~sda~IvlpGG-----~GTL~El~~~~t~~ql-g~~~kPIill~~ 145 (220)
..+|.+|+.+|| ..........+.+... ...++|+++++.
T Consensus 62 ~~~~~vii~GGg~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~g~ 107 (286)
T PF04230_consen 62 KNADDVIIGGGGGSDNNFIDLWSLPIFLRWLFLAKKLGKPVIILGQ 107 (286)
T ss_pred ccCCeEEEECCcccccCCCcchhhHHHHHHHHHHHhcCCCeEEECc
Confidence 456777777775 2222222111222222 246899999976
No 197
>PRK04155 chaperone protein HchA; Provisional
Probab=31.54 E-value=48 Score=29.60 Aligned_cols=36 Identities=22% Similarity=0.279 Sum_probs=23.1
Q ss_pred CC-eEEEecCCcccHHHHHHHHHHHHh----ccCCCcEEEE
Q 039983 108 AD-CFIALPGGFGTLEELFEVTTWSQL----GIHNKPVGLI 143 (220)
Q Consensus 108 sd-a~IvlpGG~GTL~El~~~~t~~ql----g~~~kPIill 143 (220)
+| ..|++|||.|.+..|.+--.+.++ ...+|||..+
T Consensus 146 ~dYDaV~iPGG~g~~~dL~~~~~l~~ll~~~~~~~K~VaAI 186 (287)
T PRK04155 146 SDYAAVFIPGGHGALIGLPESEDVAAALQWALDNDRFIITL 186 (287)
T ss_pred ccccEEEECCCCchHHHHhhCHHHHHHHHHHHHcCCEEEEE
Confidence 44 577899999998766443322222 1357888766
No 198
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=31.46 E-value=1.6e+02 Score=25.24 Aligned_cols=68 Identities=19% Similarity=0.284 Sum_probs=42.8
Q ss_pred HHHHHHhCCeEEEec---CCcccHHHHHHHHHHHHhccCCCcEEEEcCCCCchhHHHHHHHHHHcCCCCccccCcEEEcC
Q 039983 101 KAEMARNADCFIALP---GGFGTLEELFEVTTWSQLGIHNKPVGLINVEGYYDPILNFIDKSIDEGFIYPSQRSIIVSAS 177 (220)
Q Consensus 101 k~~~~~~sda~Ivlp---GG~GTL~El~~~~t~~qlg~~~kPIill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~ 177 (220)
...++..||++|.-. .|+|+. ++|++. .++|||..+..+ ...++. + .....++-.+
T Consensus 257 ~~~~l~~ad~~i~ps~~~e~~~~~--l~EA~a------~G~PvI~~~~~~-~~e~i~-------~-----~~~g~~~~~~ 315 (355)
T cd03819 257 MPAAYALADIVVSASTEPEAFGRT--AVEAQA------MGRPVIASDHGG-ARETVR-------P-----GETGLLVPPG 315 (355)
T ss_pred HHHHHHhCCEEEecCCCCCCCchH--HHHHHh------cCCCEEEcCCCC-cHHHHh-------C-----CCceEEeCCC
Confidence 345667899987643 455643 577776 589999887644 333221 1 1134455568
Q ss_pred CHHHHHHHHHhh
Q 039983 178 NAKELVQKLEDY 189 (220)
Q Consensus 178 d~ee~~~~l~~~ 189 (220)
|++++.+.|...
T Consensus 316 ~~~~l~~~i~~~ 327 (355)
T cd03819 316 DAEALAQALDQI 327 (355)
T ss_pred CHHHHHHHHHHH
Confidence 999999888644
No 199
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=31.24 E-value=2.3e+02 Score=25.04 Aligned_cols=62 Identities=19% Similarity=0.276 Sum_probs=41.9
Q ss_pred CCCceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEcCCCcChhHHHHHHHHhcCCcEEEEeCCcc
Q 039983 9 SRFKRVCVFCGSSPDYKYCYRKAAVDLGNELVSRGLDLVYGGGSVGLMGLISEEVHRGGRHVLGIIPKAL 78 (220)
Q Consensus 9 ~~~~~I~Vfgss~~~~~~~~~~~A~~lG~~lA~~g~~lVtGGg~~GlM~ava~gA~~~gG~viGv~P~~~ 78 (220)
.+++++-|-|.|+ + ..+++++.||++|+.||-=+...=-++++++.-....|..+=|+|-.+
T Consensus 4 ~~~~~~lITGASs-G-------IG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DL 65 (265)
T COG0300 4 MKGKTALITGASS-G-------IGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPADL 65 (265)
T ss_pred CCCcEEEEECCCc-h-------HHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcC
Confidence 4456677777665 3 346788888999999998888755666666665555555566666443
No 200
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=31.04 E-value=3e+02 Score=24.82 Aligned_cols=32 Identities=19% Similarity=0.215 Sum_probs=20.5
Q ss_pred CCCceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCC
Q 039983 9 SRFKRVCVFCGSSPDYKYCYRKAAVDLGNELVSRG 43 (220)
Q Consensus 9 ~~~~~I~Vfgss~~~~~~~~~~~A~~lG~~lA~~g 43 (220)
+++++|+|+.-.. .+...+.++++.++|.++|
T Consensus 3 ~~~~~I~iv~~~~---~~~~~~~~~~l~~~L~~~g 34 (306)
T PRK03372 3 TASRRVLLVAHTG---RDEATEAARRVAKQLGDAG 34 (306)
T ss_pred CCccEEEEEecCC---CHHHHHHHHHHHHHHHHCC
Confidence 3556799986543 3555667777777765544
No 201
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=30.93 E-value=1.7e+02 Score=26.31 Aligned_cols=58 Identities=19% Similarity=0.197 Sum_probs=38.0
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCe-EEEcCCCcChhHHHHHHHHhcCCcEEEE
Q 039983 14 VCVFCGSSPDYKYCYRKAAVDLGNELVSRGLD-LVYGGGSVGLMGLISEEVHRGGRHVLGI 73 (220)
Q Consensus 14 I~Vfgss~~~~~~~~~~~A~~lG~~lA~~g~~-lVtGGg~~GlM~ava~gA~~~gG~viGv 73 (220)
=++.|+||...... .+.-+++.+.|-+.+.. |++=||. |-|..+.+=+.+.+-.+|||
T Consensus 63 Gt~LgtsR~~~~~~-~~~~~~~~~~l~~~~Id~Li~IGGd-gs~~~a~~L~e~~~i~vigi 121 (301)
T TIGR02482 63 GTILGTARCPEFKT-EEGRQKAVENLKKLGIEGLVVIGGD-GSYTGAQKLYEEGGIPVIGL 121 (301)
T ss_pred CceeccCCCCccCC-HHHHHHHHHHHHHcCCCEEEEeCCc-hHHHHHHHHHHhhCCCEEee
Confidence 35778888542111 12234566677777665 5556667 99988887766678899997
No 202
>cd07225 Pat_PNPLA6_PNPLA7 Patatin-like phospholipase domain containing protein 6 and protein 7. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are 60% identical to each other. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologous to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and pancreatic tissue. NRE
Probab=30.91 E-value=51 Score=29.59 Aligned_cols=31 Identities=32% Similarity=0.481 Sum_probs=23.7
Q ss_pred HHHHHHHHHCCCeEEEcCCCcChhHHHHHHHHh
Q 039983 33 VDLGNELVSRGLDLVYGGGSVGLMGLISEEVHR 65 (220)
Q Consensus 33 ~~lG~~lA~~g~~lVtGGg~~GlM~ava~gA~~ 65 (220)
++|++.|......||-+|| |+=+.++-|+++
T Consensus 5 ~rl~r~l~~~~~gLvL~GG--G~RG~ahiGvL~ 35 (306)
T cd07225 5 SRLARVLTGNSIALVLGGG--GARGCAHIGVIK 35 (306)
T ss_pred HHHHHHhcCCCEEEEECCh--HHHHHHHHHHHH
Confidence 5788999999999998776 566666666665
No 203
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=30.76 E-value=1.5e+02 Score=27.87 Aligned_cols=70 Identities=21% Similarity=0.159 Sum_probs=39.9
Q ss_pred CeEEEcCCCcChhHHHHHHHHhcCCcEEEEeCCcccccccCCCCCceEeecCCHHHHHHHHHHhCCeEEEecCCcccHHH
Q 039983 44 LDLVYGGGSVGLMGLISEEVHRGGRHVLGIIPKALMKKELTGVTLGEVKPVDHMHQRKAEMARNADCFIALPGGFGTLEE 123 (220)
Q Consensus 44 ~~lVtGGg~~GlM~ava~gA~~~gG~viGv~P~~~~~~e~~~~~~~~~~~~~~~~~Rk~~~~~~sda~IvlpGG~GTL~E 123 (220)
..+|.|.|+.|.. +++.++..|.+|+.+-.+.....+.....+ .+.++. . .+..+|.+|...|..+.+++
T Consensus 197 ~VvViG~G~IG~~--vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~----~v~~le---e-al~~aDVVItaTG~~~vI~~ 266 (406)
T TIGR00936 197 TVVVAGYGWCGKG--IAMRARGMGARVIVTEVDPIRALEAAMDGF----RVMTME---E-AAKIGDIFITATGNKDVIRG 266 (406)
T ss_pred EEEEECCCHHHHH--HHHHHhhCcCEEEEEeCChhhHHHHHhcCC----EeCCHH---H-HHhcCCEEEECCCCHHHHHH
Confidence 3467888887765 446677778888887322111111111111 112342 2 35789999999988777764
No 204
>cd04261 AAK_AKii-LysC-BS AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase isoenzyme type, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In this organism and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and
Probab=30.70 E-value=1.3e+02 Score=25.55 Aligned_cols=40 Identities=18% Similarity=0.191 Sum_probs=22.6
Q ss_pred EcCCCCCCCHHHHHHHHHHHHHHHHCC--CeEEEcCCCcChhHH
Q 039983 17 FCGSSPDYKYCYRKAAVDLGNELVSRG--LDLVYGGGSVGLMGL 58 (220)
Q Consensus 17 fgss~~~~~~~~~~~A~~lG~~lA~~g--~~lVtGGg~~GlM~a 58 (220)
|||+...+.+...+.++.+.+. .+.| ..||.||+. +....
T Consensus 6 ~GGs~l~~~~~~~~~~~~i~~l-~~~g~~~vvV~sg~g-~~~~~ 47 (239)
T cd04261 6 FGGTSVASIERIKRVAERIKKR-KKKGNQVVVVVSAMG-GTTDE 47 (239)
T ss_pred ECCcccCCHHHHHHHHHHHHHH-HHcCCCEEEEECCCC-chhHH
Confidence 7888875434455555555554 3444 447777754 44443
No 205
>KOG1718 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=30.69 E-value=39 Score=28.36 Aligned_cols=54 Identities=13% Similarity=0.239 Sum_probs=33.0
Q ss_pred HhCCeEEEecCCcccHHHHHHHHHHHHhc----------cCCCcEEEEcCCCCchhHHHHHHHHH
Q 039983 106 RNADCFIALPGGFGTLEELFEVTTWSQLG----------IHNKPVGLINVEGYYDPILNFIDKSI 160 (220)
Q Consensus 106 ~~sda~IvlpGG~GTL~El~~~~t~~qlg----------~~~kPIill~~~g~~~~l~~~l~~~~ 160 (220)
+.+.-+|=.--|.---.-|+.++-++..+ +..+|||==|. |||+.|+++=+++.
T Consensus 93 ~gG~TLvHC~AGVSRSAsLClAYLmK~~~msLreAy~~vKa~RpiIRPN~-GFw~QLi~YE~qL~ 156 (198)
T KOG1718|consen 93 RGGKTLVHCVAGVSRSASLCLAYLMKYHCMSLREAYHWVKARRPIIRPNV-GFWRQLIDYEQQLF 156 (198)
T ss_pred cCCcEEEEEccccchhHHHHHHHHHHHccchHHHHHHHHHhhCceeCCCc-cHHHHHHHHHHHhc
Confidence 34555565566665555555555333322 13689987675 89999999855554
No 206
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=30.63 E-value=2.7e+02 Score=24.78 Aligned_cols=68 Identities=22% Similarity=0.321 Sum_probs=41.0
Q ss_pred CchhhhhcCCCceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCe---------------------------EEEcCCCc
Q 039983 1 MEEKKEAKSRFKRVCVFCGSSPDYKYCYRKAAVDLGNELVSRGLD---------------------------LVYGGGSV 53 (220)
Q Consensus 1 ~~~~~~~~~~~~~I~Vfgss~~~~~~~~~~~A~~lG~~lA~~g~~---------------------------lVtGGg~~ 53 (220)
|..|++.+ .+++|+|+.-.. +...+.+.++.++|.++|+. +|+=||-
T Consensus 1 ~~~~~~~~-~~~~i~ii~~~~----~~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~iGGD- 74 (287)
T PRK14077 1 MQNKIDHK-NIKKIGLVTRPN----VSLDKEILKLQKILSIYKVEILLEKESAEILDLPGYGLDELFKISDFLISLGGD- 74 (287)
T ss_pred Cccccccc-cCCEEEEEeCCc----HHHHHHHHHHHHHHHHCCCEEEEecchhhhhcccccchhhcccCCCEEEEECCC-
Confidence 44555544 477899997543 25566778888777554421 2333444
Q ss_pred ChhHHHHHHHHhcCCcEEEEe
Q 039983 54 GLMGLISEEVHRGGRHVLGII 74 (220)
Q Consensus 54 GlM~ava~gA~~~gG~viGv~ 74 (220)
|-|=-+++-+...+-.++||-
T Consensus 75 GT~L~aa~~~~~~~~PilGIN 95 (287)
T PRK14077 75 GTLISLCRKAAEYDKFVLGIH 95 (287)
T ss_pred HHHHHHHHHhcCCCCcEEEEe
Confidence 776655555555666788884
No 207
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=30.56 E-value=1.2e+02 Score=26.10 Aligned_cols=52 Identities=12% Similarity=0.137 Sum_probs=34.0
Q ss_pred CceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEcCCCcChhHHHHHHHHhcCCcEEEE
Q 039983 11 FKRVCVFCGSSPDYKYCYRKAAVDLGNELVSRGLDLVYGGGSVGLMGLISEEVHRGGRHVLGI 73 (220)
Q Consensus 11 ~~~I~Vfgss~~~~~~~~~~~A~~lG~~lA~~g~~lVtGGg~~GlM~ava~gA~~~gG~viGv 73 (220)
||+|+|+|-.+.+ ..|++.+++.||.++.|+.. --++....+.+.+..++|.
T Consensus 1 m~~~~i~GtGniG---------~alA~~~a~ag~eV~igs~r--~~~~~~a~a~~l~~~i~~~ 52 (211)
T COG2085 1 MMIIAIIGTGNIG---------SALALRLAKAGHEVIIGSSR--GPKALAAAAAALGPLITGG 52 (211)
T ss_pred CcEEEEeccChHH---------HHHHHHHHhCCCeEEEecCC--ChhHHHHHHHhhccccccC
Confidence 5678888865543 46788889999999998765 3444444444445444443
No 208
>COG0716 FldA Flavodoxins [Energy production and conversion]
Probab=30.48 E-value=87 Score=24.59 Aligned_cols=35 Identities=20% Similarity=0.324 Sum_probs=25.4
Q ss_pred CceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEE
Q 039983 11 FKRVCVFCGSSPDYKYCYRKAAVDLGNELVSRGLDLVY 48 (220)
Q Consensus 11 ~~~I~Vfgss~~~~~~~~~~~A~~lG~~lA~~g~~lVt 48 (220)
|++|+|+-+|..++. ...|+.+.+.|...++.+..
T Consensus 1 M~ki~Ivy~S~tGnT---e~vA~~i~~~l~~~~~~~~~ 35 (151)
T COG0716 1 MMKILIVYGSRTGNT---EKVAEIIAEELGADGFEVDI 35 (151)
T ss_pred CCeEEEEEEcCCCcH---HHHHHHHHHHhccCCceEEE
Confidence 567888888887742 34578888888887776633
No 209
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=30.38 E-value=1.6e+02 Score=27.94 Aligned_cols=86 Identities=21% Similarity=0.220 Sum_probs=45.3
Q ss_pred eEEEcCCCcChhHHHHHHHHhcCCcEEEEeCCcccccccCCCCCceEeecCCHHHHHHHHHHhCCeEEEecCCcccHH-H
Q 039983 45 DLVYGGGSVGLMGLISEEVHRGGRHVLGIIPKALMKKELTGVTLGEVKPVDHMHQRKAEMARNADCFIALPGGFGTLE-E 123 (220)
Q Consensus 45 ~lVtGGg~~GlM~ava~gA~~~gG~viGv~P~~~~~~e~~~~~~~~~~~~~~~~~Rk~~~~~~sda~IvlpGG~GTL~-E 123 (220)
.+|.|.|+.|.. ++.-++..|.+|+.+-.+.....+.....+ + +.++. -.++.+|.+|...|--++++ +
T Consensus 215 VlViG~G~IG~~--vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~-~---v~~l~----eal~~aDVVI~aTG~~~vI~~~ 284 (425)
T PRK05476 215 VVVAGYGDVGKG--CAQRLRGLGARVIVTEVDPICALQAAMDGF-R---VMTME----EAAELGDIFVTATGNKDVITAE 284 (425)
T ss_pred EEEECCCHHHHH--HHHHHHhCCCEEEEEcCCchhhHHHHhcCC-E---ecCHH----HHHhCCCEEEECCCCHHHHHHH
Confidence 467888876644 556677778887776322111011111111 1 12332 23468999999887666665 3
Q ss_pred HHHHHHHHHhccCCCcEEEEcCCCC
Q 039983 124 LFEVTTWSQLGIHNKPVGLINVEGY 148 (220)
Q Consensus 124 l~~~~t~~qlg~~~kPIill~~~g~ 148 (220)
.+..+ +.-.+++|...|
T Consensus 285 ~~~~m--------K~GailiNvG~~ 301 (425)
T PRK05476 285 HMEAM--------KDGAILANIGHF 301 (425)
T ss_pred HHhcC--------CCCCEEEEcCCC
Confidence 33333 334566676433
No 210
>PRK06180 short chain dehydrogenase; Provisional
Probab=30.27 E-value=73 Score=27.12 Aligned_cols=34 Identities=21% Similarity=0.037 Sum_probs=21.9
Q ss_pred CceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEcCCC
Q 039983 11 FKRVCVFCGSSPDYKYCYRKAAVDLGNELVSRGLDLVYGGGS 52 (220)
Q Consensus 11 ~~~I~Vfgss~~~~~~~~~~~A~~lG~~lA~~g~~lVtGGg~ 52 (220)
.++|.|.|+++- ..+.+.+.|+++|+.|+..+-.
T Consensus 4 ~~~vlVtGasgg--------iG~~la~~l~~~G~~V~~~~r~ 37 (277)
T PRK06180 4 MKTWLITGVSSG--------FGRALAQAALAAGHRVVGTVRS 37 (277)
T ss_pred CCEEEEecCCCh--------HHHHHHHHHHhCcCEEEEEeCC
Confidence 356788887662 3456666677788887655443
No 211
>cd07227 Pat_Fungal_NTE1 Fungal patatin-like phospholipase domain containing protein 6. These are fungal Neuropathy Target Esterase (NTE), commonly referred to as NTE1. Patatin-like phospholipase. NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. This family includes NTE1 from fungi.
Probab=30.26 E-value=39 Score=29.80 Aligned_cols=30 Identities=30% Similarity=0.575 Sum_probs=22.4
Q ss_pred HHHHHHHHCCCeEEEcCCCcChhHHHHHHHHh
Q 039983 34 DLGNELVSRGLDLVYGGGSVGLMGLISEEVHR 65 (220)
Q Consensus 34 ~lG~~lA~~g~~lVtGGg~~GlM~ava~gA~~ 65 (220)
+|+|.|+.+...||.||| |.=++++-|+++
T Consensus 1 rlar~l~g~~igLVL~GG--GaRG~ahiGVL~ 30 (269)
T cd07227 1 RLARRLCGQAIGLVLGGG--GARGISHIGILQ 30 (269)
T ss_pred ChhhHhcCCCEEEEECCc--HHHHHHHHHHHH
Confidence 378888888899998776 566666666665
No 212
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=30.25 E-value=1.1e+02 Score=25.22 Aligned_cols=40 Identities=18% Similarity=0.281 Sum_probs=29.2
Q ss_pred HHHHHhCCeEEEecCCcccHHHHHHHHHHHHhccCCCcEEEEcCC
Q 039983 102 AEMARNADCFIALPGGFGTLEELFEVTTWSQLGIHNKPVGLINVE 146 (220)
Q Consensus 102 ~~~~~~sda~IvlpGG~GTL~El~~~~t~~qlg~~~kPIill~~~ 146 (220)
..+-+..|++|+.|-....+.++.+.+. ..+.||++++..
T Consensus 50 ~~i~~~~d~Iiv~~~~~~~~~~~l~~~~-----~~gIpvv~~d~~ 89 (257)
T PF13407_consen 50 QAISQGVDGIIVSPVDPDSLAPFLEKAK-----AAGIPVVTVDSD 89 (257)
T ss_dssp HHHHTTESEEEEESSSTTTTHHHHHHHH-----HTTSEEEEESST
T ss_pred HHHHhcCCEEEecCCCHHHHHHHHHHHh-----hcCceEEEEecc
Confidence 3455568999999888877777766654 257899998764
No 213
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=30.20 E-value=1e+02 Score=25.71 Aligned_cols=33 Identities=15% Similarity=0.071 Sum_probs=19.1
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEE
Q 039983 14 VCVFCGSSPDYKYCYRKAAVDLGNELVSRGLDLVY 48 (220)
Q Consensus 14 I~Vfgss~~~~~~~~~~~A~~lG~~lA~~g~~lVt 48 (220)
|+|.-.+. .++-+.+....+-+.+.+.|+.++.
T Consensus 2 igvi~~~~--~~~~~~~~~~gi~~~~~~~g~~~~~ 34 (275)
T cd06320 2 YGVVLKTL--SNEFWRSLKEGYENEAKKLGVSVDI 34 (275)
T ss_pred eeEEEecC--CCHHHHHHHHHHHHHHHHhCCeEEE
Confidence 55555432 2455555566666666667777653
No 214
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=30.20 E-value=1.7e+02 Score=20.55 Aligned_cols=33 Identities=18% Similarity=0.098 Sum_probs=21.5
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEE
Q 039983 12 KRVCVFCGSSPDYKYCYRKAAVDLGNELVSRGLDLVY 48 (220)
Q Consensus 12 ~~I~Vfgss~~~~~~~~~~~A~~lG~~lA~~g~~lVt 48 (220)
+.+-|+..... ++...=.++++.|+++|+.++.
T Consensus 16 k~~v~i~HG~~----eh~~ry~~~a~~L~~~G~~V~~ 48 (79)
T PF12146_consen 16 KAVVVIVHGFG----EHSGRYAHLAEFLAEQGYAVFA 48 (79)
T ss_pred CEEEEEeCCcH----HHHHHHHHHHHHHHhCCCEEEE
Confidence 45555554442 2223346788999999999885
No 215
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=30.17 E-value=77 Score=27.95 Aligned_cols=41 Identities=32% Similarity=0.635 Sum_probs=25.2
Q ss_pred cHHHHHHHHHHHHhccCCCcEEEEcCCCCchhHHH-----HHHHHHHcC
Q 039983 120 TLEELFEVTTWSQLGIHNKPVGLINVEGYYDPILN-----FIDKSIDEG 163 (220)
Q Consensus 120 TL~El~~~~t~~qlg~~~kPIill~~~g~~~~l~~-----~l~~~~~~g 163 (220)
|++.+++.+.-.+-...+.|++++ +||+++.. |++.+.+.|
T Consensus 70 ~~~~~~~~~~~ir~~~~~~pivlm---~Y~N~i~~~G~e~F~~~~~~aG 115 (259)
T PF00290_consen 70 TLEKIFELVKEIRKKEPDIPIVLM---TYYNPIFQYGIERFFKEAKEAG 115 (259)
T ss_dssp -HHHHHHHHHHHHHHCTSSEEEEE---E-HHHHHHH-HHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhccCCCCCEEEE---eeccHHhccchHHHHHHHHHcC
Confidence 467777777655534467999999 48887543 555555543
No 216
>PLN02496 probable phosphopantothenoylcysteine decarboxylase
Probab=29.93 E-value=1.3e+02 Score=25.82 Aligned_cols=89 Identities=15% Similarity=0.145 Sum_probs=54.1
Q ss_pred HHHhCCeEEEecCCcccHHHHHHHHHHHHh-----c-cCCCcEEEEcC--CCCchh--HHHHHHHHHHcCC--CCccccC
Q 039983 104 MARNADCFIALPGGFGTLEELFEVTTWSQL-----G-IHNKPVGLINV--EGYYDP--ILNFIDKSIDEGF--IYPSQRS 171 (220)
Q Consensus 104 ~~~~sda~IvlpGG~GTL~El~~~~t~~ql-----g-~~~kPIill~~--~g~~~~--l~~~l~~~~~~g~--i~~~~~~ 171 (220)
+.+.+|++||.|=..+|+.-+..=++-.-+ . ..++|+++.-. ...|+. ....++.+.+.|+ +.+....
T Consensus 93 La~wAD~~vVaPaTaNtlaKiA~GiaDnlltt~l~a~~~~~Pv~iaPaMN~~Mw~~Pat~~nl~~L~~~G~~vi~P~~g~ 172 (209)
T PLN02496 93 LRRWADVMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYSKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVTKR 172 (209)
T ss_pred hhhhhCEEEEEeCCHHHHHHHHcccCCcHHHHHHHHcCCCCCEEEEeCCCHHHHhCHHHHHHHHHHHHCCCEEECCCcCc
Confidence 445799999999999999887643322111 1 13699998732 357773 3344556666563 3332221
Q ss_pred cEE-------EcCCHHHHHHHHHhhcCCC
Q 039983 172 IIV-------SASNAKELVQKLEDYVPSH 193 (220)
Q Consensus 172 ~i~-------~~~d~ee~~~~l~~~~~~~ 193 (220)
+- --.++++++.++.++....
T Consensus 173 -lAcg~~G~Grm~ep~~I~~~i~~~l~~~ 200 (209)
T PLN02496 173 -LACGDYGNGAMAEPSLIYSTVRLFLESR 200 (209)
T ss_pred -ccCCCcCCCCCCCHHHHHHHHHHHHhhc
Confidence 11 1236899999998876543
No 217
>PRK07102 short chain dehydrogenase; Provisional
Probab=29.85 E-value=74 Score=26.27 Aligned_cols=29 Identities=17% Similarity=0.240 Sum_probs=16.1
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEE
Q 039983 12 KRVCVFCGSSPDYKYCYRKAAVDLGNELVSRGLDLVY 48 (220)
Q Consensus 12 ~~I~Vfgss~~~~~~~~~~~A~~lG~~lA~~g~~lVt 48 (220)
++|.|.|+++- ....+++.|+++|+.|+-
T Consensus 2 ~~vlItGas~g--------iG~~~a~~l~~~G~~Vi~ 30 (243)
T PRK07102 2 KKILIIGATSD--------IARACARRYAAAGARLYL 30 (243)
T ss_pred cEEEEEcCCcH--------HHHHHHHHHHhcCCEEEE
Confidence 45666776541 234555556666766543
No 218
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=29.66 E-value=1.8e+02 Score=26.82 Aligned_cols=58 Identities=21% Similarity=0.182 Sum_probs=37.3
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCe-EEEcCCCcChhHHHHHHHHhcCCcEEEE
Q 039983 14 VCVFCGSSPDYKYCYRKAAVDLGNELVSRGLD-LVYGGGSVGLMGLISEEVHRGGRHVLGI 73 (220)
Q Consensus 14 I~Vfgss~~~~~~~~~~~A~~lG~~lA~~g~~-lVtGGg~~GlM~ava~gA~~~gG~viGv 73 (220)
=++.+|||...... .+......+.|.+.|.. ||.=||. |-+..+..=+-+.+-.+|||
T Consensus 66 GT~lgssR~~~~~~-~e~~~~~~~~l~~~gId~LvvIGGD-gS~~gA~~Lae~~~i~vVGv 124 (347)
T COG0205 66 GTFLGSARFPEFKT-EEGRKVAAENLKKLGIDALVVIGGD-GSYTGAALLAEEGGIPVVGV 124 (347)
T ss_pred CeEEeeCCCCCccc-HHHHHHHHHHHHHcCCCEEEEECCC-ChHHHHHHHHHhcCCcEEec
Confidence 46778888653211 12223556667777765 5555666 77777777666666889998
No 219
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=29.60 E-value=2.7e+02 Score=24.37 Aligned_cols=42 Identities=29% Similarity=0.547 Sum_probs=25.0
Q ss_pred cHHHHHHHHHHHHhccCCCcEEEEcCCCCchhHH-----HHHHHHHHcCC
Q 039983 120 TLEELFEVTTWSQLGIHNKPVGLINVEGYYDPIL-----NFIDKSIDEGF 164 (220)
Q Consensus 120 TL~El~~~~t~~qlg~~~kPIill~~~g~~~~l~-----~~l~~~~~~g~ 164 (220)
|++.+++.+.-..-...+.|++++ +||+++. +|++.+.+-|.
T Consensus 72 ~~~~~~~~~~~~r~~~~~~p~vlm---~Y~N~i~~~G~e~f~~~~~~aGv 118 (258)
T PRK13111 72 TLADVFELVREIREKDPTIPIVLM---TYYNPIFQYGVERFAADAAEAGV 118 (258)
T ss_pred CHHHHHHHHHHHHhcCCCCCEEEE---ecccHHhhcCHHHHHHHHHHcCC
Confidence 456666665443323356899887 4676544 46666666554
No 220
>PRK07677 short chain dehydrogenase; Provisional
Probab=29.53 E-value=83 Score=26.19 Aligned_cols=28 Identities=21% Similarity=0.307 Sum_probs=14.7
Q ss_pred eEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEE
Q 039983 13 RVCVFCGSSPDYKYCYRKAAVDLGNELVSRGLDLVY 48 (220)
Q Consensus 13 ~I~Vfgss~~~~~~~~~~~A~~lG~~lA~~g~~lVt 48 (220)
++-|.|+++. ..+.+++.|+++|+.|+.
T Consensus 3 ~~lItG~s~g--------iG~~ia~~l~~~G~~Vi~ 30 (252)
T PRK07677 3 VVIITGGSSG--------MGKAMAKRFAEEGANVVI 30 (252)
T ss_pred EEEEeCCCCh--------HHHHHHHHHHHCCCEEEE
Confidence 4555665542 234555555566666543
No 221
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=29.45 E-value=82 Score=26.01 Aligned_cols=29 Identities=21% Similarity=0.169 Sum_probs=14.7
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEE
Q 039983 12 KRVCVFCGSSPDYKYCYRKAAVDLGNELVSRGLDLVY 48 (220)
Q Consensus 12 ~~I~Vfgss~~~~~~~~~~~A~~lG~~lA~~g~~lVt 48 (220)
++|-|.|+++. ..+.+++.|++.|+.|+-
T Consensus 6 k~vlItGas~g--------IG~~ia~~l~~~G~~vi~ 34 (248)
T TIGR01832 6 KVALVTGANTG--------LGQGIAVGLAEAGADIVG 34 (248)
T ss_pred CEEEEECCCch--------HHHHHHHHHHHCCCEEEE
Confidence 34555555441 234455555566665543
No 222
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=29.43 E-value=3e+02 Score=24.40 Aligned_cols=75 Identities=12% Similarity=0.223 Sum_probs=41.1
Q ss_pred EeecCCH-HHHHHHHHHhCCeEEEecCCcccHHHHHHHHHHHHhccCCCcEEEEc-CCCCchhHHHHHHHHHHcCCCCcc
Q 039983 91 VKPVDHM-HQRKAEMARNADCFIALPGGFGTLEELFEVTTWSQLGIHNKPVGLIN-VEGYYDPILNFIDKSIDEGFIYPS 168 (220)
Q Consensus 91 ~~~~~~~-~~Rk~~~~~~sda~IvlpGG~GTL~El~~~~t~~qlg~~~kPIill~-~~g~~~~l~~~l~~~~~~g~i~~~ 168 (220)
+.+...+ ..+...++..+|++|. +.| +. +.|++. .++|++... ..+ +..+. ..|
T Consensus 257 v~~~~~~~~~~~~~~l~~ad~vv~-~Sg--~~--~~EA~a------~g~PvI~~~~~~~-~~e~~-------~~g----- 312 (365)
T TIGR00236 257 VHLIEPLEYLDFLNLAANSHLILT-DSG--GV--QEEAPS------LGKPVLVLRDTTE-RPETV-------EAG----- 312 (365)
T ss_pred EEEECCCChHHHHHHHHhCCEEEE-CCh--hH--HHHHHH------cCCCEEECCCCCC-ChHHH-------hcC-----
Confidence 3344433 2344456677887754 432 22 345565 489999873 333 32221 111
Q ss_pred ccCcEEEcCCHHHHHHHHHhhcC
Q 039983 169 QRSIIVSASNAKELVQKLEDYVP 191 (220)
Q Consensus 169 ~~~~i~~~~d~ee~~~~l~~~~~ 191 (220)
..+.+..|++++.+.+.+...
T Consensus 313 --~~~lv~~d~~~i~~ai~~ll~ 333 (365)
T TIGR00236 313 --TNKLVGTDKENITKAAKRLLT 333 (365)
T ss_pred --ceEEeCCCHHHHHHHHHHHHh
Confidence 223345789999888887653
No 223
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=29.32 E-value=47 Score=30.15 Aligned_cols=43 Identities=16% Similarity=0.261 Sum_probs=32.3
Q ss_pred CCchhHHHHHHHHHHcCCCCccccC---cEEEcCCHHHHHHHHHhh
Q 039983 147 GYYDPILNFIDKSIDEGFIYPSQRS---IIVSASNAKELVQKLEDY 189 (220)
Q Consensus 147 g~~~~l~~~l~~~~~~g~i~~~~~~---~i~~~~d~ee~~~~l~~~ 189 (220)
.+|+-+...+..|+.+|.|+++..+ +-++..+++|+-+.+++-
T Consensus 198 ~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps~eEv~~~I~~~ 243 (334)
T PF03492_consen 198 MLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPSPEEVRAIIEEE 243 (334)
T ss_dssp CHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCCHHHHHHHHhcC
Confidence 4688888888999999999999765 447899999999998875
No 224
>KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=29.22 E-value=75 Score=27.11 Aligned_cols=30 Identities=27% Similarity=0.479 Sum_probs=27.1
Q ss_pred CeEEEcCCCcChhHHHHHHHHhcCCcEEEEe
Q 039983 44 LDLVYGGGSVGLMGLISEEVHRGGRHVLGII 74 (220)
Q Consensus 44 ~~lVtGGg~~GlM~ava~gA~~~gG~viGv~ 74 (220)
..+|||.|. |+=.+.+..-.++|.+||.+.
T Consensus 9 ~vlvTgaga-GIG~~~v~~La~aGA~ViAva 38 (245)
T KOG1207|consen 9 IVLVTGAGA-GIGKEIVLSLAKAGAQVIAVA 38 (245)
T ss_pred EEEeecccc-cccHHHHHHHHhcCCEEEEEe
Confidence 457899998 999999999999999999994
No 225
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=29.21 E-value=69 Score=28.59 Aligned_cols=30 Identities=23% Similarity=0.391 Sum_probs=22.2
Q ss_pred eEEEecCCcccHHHHHHHHHHHHhccCCCc-EEEEc
Q 039983 110 CFIALPGGFGTLEELFEVTTWSQLGIHNKP-VGLIN 144 (220)
Q Consensus 110 a~IvlpGG~GTL~El~~~~t~~qlg~~~kP-Iill~ 144 (220)
-.|+..||=||++|+...+. .+..| +.++-
T Consensus 60 D~via~GGDGTv~evingl~-----~~~~~~LgilP 90 (301)
T COG1597 60 DTVIAAGGDGTVNEVANGLA-----GTDDPPLGILP 90 (301)
T ss_pred CEEEEecCcchHHHHHHHHh-----cCCCCceEEec
Confidence 36677789999999998875 24555 77773
No 226
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=29.12 E-value=55 Score=28.77 Aligned_cols=39 Identities=18% Similarity=0.219 Sum_probs=28.7
Q ss_pred HHHHHHhCCeEEEecCCcccHHHHHHHHHHHHhccCCCcEEEEcC
Q 039983 101 KAEMARNADCFIALPGGFGTLEELFEVTTWSQLGIHNKPVGLINV 145 (220)
Q Consensus 101 k~~~~~~sda~IvlpGG~GTL~El~~~~t~~qlg~~~kPIill~~ 145 (220)
-+++.+.++.-|++-+|+||.++..+++.+ +---+|+|+
T Consensus 167 l~~i~~~~~vPvIvDAGiG~pSdaa~AMEl------G~daVLvNT 205 (247)
T PF05690_consen 167 LRIIIERADVPVIVDAGIGTPSDAAQAMEL------GADAVLVNT 205 (247)
T ss_dssp HHHHHHHGSSSBEEES---SHHHHHHHHHT------T-SEEEESH
T ss_pred HHHHHHhcCCcEEEeCCCCCHHHHHHHHHc------CCceeehhh
Confidence 456777889999999999999999999874 666678875
No 227
>PRK13337 putative lipid kinase; Reviewed
Probab=29.05 E-value=2.9e+02 Score=24.28 Aligned_cols=31 Identities=26% Similarity=0.374 Sum_probs=22.1
Q ss_pred EEEecCCcccHHHHHHHHHHHHhccCCCcEEEEc
Q 039983 111 FIALPGGFGTLEELFEVTTWSQLGIHNKPVGLIN 144 (220)
Q Consensus 111 ~IvlpGG~GTL~El~~~~t~~qlg~~~kPIill~ 144 (220)
.|+.-||=||++|+...+.- . ....|+.++-
T Consensus 60 ~vvv~GGDGTl~~vv~gl~~--~-~~~~~lgiiP 90 (304)
T PRK13337 60 LVIAAGGDGTLNEVVNGIAE--K-ENRPKLGIIP 90 (304)
T ss_pred EEEEEcCCCHHHHHHHHHhh--C-CCCCcEEEEC
Confidence 57788999999999877631 1 1245888874
No 228
>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity. Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....
Probab=29.02 E-value=51 Score=25.66 Aligned_cols=34 Identities=26% Similarity=0.462 Sum_probs=19.6
Q ss_pred EEEecCCcccHHHHH-H---HHHHHH-hccCCCcEEEEc
Q 039983 111 FIALPGGFGTLEELF-E---VTTWSQ-LGIHNKPVGLIN 144 (220)
Q Consensus 111 ~IvlpGG~GTL~El~-~---~~t~~q-lg~~~kPIill~ 144 (220)
.|++|||.|..+-+. . +..+.+ ...++|||..+-
T Consensus 40 alilpGG~~~~~~l~~~~~~l~~~~~~~~~~~k~iaaIC 78 (147)
T PF01965_consen 40 ALILPGGHGGADDLRTDSKDLLELLKEFYEAGKPIAAIC 78 (147)
T ss_dssp EEEEE-BTHHHHHHTTCHHHHHHHHHHHHHTT-EEEEET
T ss_pred EEEECCCCchhhhHhhHHHHHHHHHHHHHHcCCeEEecC
Confidence 678999999776665 2 122222 123589998874
No 229
>PF02729 OTCace_N: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; InterPro: IPR006132 This entry contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and may also play a role in trimerization of the molecules []. The carboxyl-terminal, aspartate/ornithine-binding domain is is described by IPR006131 from INTERPRO. ; GO: 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 2P2G_D 2I6U_A 2YFK_B 3D6N_B 3SDS_A 3GD5_A 3R7L_B 3R7F_A 3R7D_A ....
Probab=29.00 E-value=1.5e+02 Score=23.46 Aligned_cols=65 Identities=23% Similarity=0.289 Sum_probs=43.2
Q ss_pred HHHHHhcCCcEEEEeCCcccccccCCCCCceEeecCCHHHHHHHHHHhCCeEEEecCCcccHHHHHHHHHHHHhccCCCc
Q 039983 60 SEEVHRGGRHVLGIIPKALMKKELTGVTLGEVKPVDHMHQRKAEMARNADCFIALPGGFGTLEELFEVTTWSQLGIHNKP 139 (220)
Q Consensus 60 a~gA~~~gG~viGv~P~~~~~~e~~~~~~~~~~~~~~~~~Rk~~~~~~sda~IvlpGG~GTL~El~~~~t~~qlg~~~kP 139 (220)
..++.+.||.++.+-|.... +-...++..=-+.|-..+|++|+=--.-+++.|+.+.. ..|
T Consensus 58 e~A~~~LGg~~i~~~~~~s~-----------~~k~Esl~Dtar~ls~~~D~iv~R~~~~~~~~~~a~~~--------~vP 118 (142)
T PF02729_consen 58 EAAANRLGGHVIYLDPSTSS-----------LGKGESLEDTARVLSRYVDAIVIRHPSHGALEELAEHS--------SVP 118 (142)
T ss_dssp HHHHHHTTCEEEEEETTTSS-----------TTTSSEHHHHHHHHHHHCSEEEEEESSHHHHHHHHHHC--------SSE
T ss_pred HHhhhcceeEEEEECccccc-----------CcCCCCHHHHHHHHHHhhheEEEEeccchHHHHHHHhc--------cCC
Confidence 44567789999998654210 01122343334477788999999988999999886444 688
Q ss_pred EEEE
Q 039983 140 VGLI 143 (220)
Q Consensus 140 Iill 143 (220)
||=.
T Consensus 119 VINa 122 (142)
T PF02729_consen 119 VINA 122 (142)
T ss_dssp EEEE
T ss_pred eEcC
Confidence 8743
No 230
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=28.96 E-value=3.1e+02 Score=24.10 Aligned_cols=57 Identities=16% Similarity=0.200 Sum_probs=35.2
Q ss_pred eEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCe--------EEEcCCCcChhHHHHHHHHh--cCCcEEEEe
Q 039983 13 RVCVFCGSSPDYKYCYRKAAVDLGNELVSRGLD--------LVYGGGSVGLMGLISEEVHR--GGRHVLGII 74 (220)
Q Consensus 13 ~I~Vfgss~~~~~~~~~~~A~~lG~~lA~~g~~--------lVtGGg~~GlM~ava~gA~~--~gG~viGv~ 74 (220)
+|+|+.. . ++...+.+.++.++|.+.|+. +|+=||- |-|=-+++-+.. .+-.++||-
T Consensus 2 ~i~Ii~~--~--~~~~~~~~~~l~~~l~~~g~~~~~~~~Dlvi~iGGD-GT~L~a~~~~~~~~~~iPilGIN 68 (265)
T PRK04885 2 KVAIISN--G--DPKSKRVASKLKKYLKDFGFILDEKNPDIVISVGGD-GTLLSAFHRYENQLDKVRFVGVH 68 (265)
T ss_pred EEEEEeC--C--CHHHHHHHHHHHHHHHHcCCccCCcCCCEEEEECCc-HHHHHHHHHhcccCCCCeEEEEe
Confidence 5888843 2 466778888898888776542 2333444 666555555444 455667763
No 231
>PRK00861 putative lipid kinase; Reviewed
Probab=28.86 E-value=59 Score=28.56 Aligned_cols=29 Identities=31% Similarity=0.466 Sum_probs=20.7
Q ss_pred EEEecCCcccHHHHHHHHHHHHhccCCCcEEEEc
Q 039983 111 FIALPGGFGTLEELFEVTTWSQLGIHNKPVGLIN 144 (220)
Q Consensus 111 ~IvlpGG~GTL~El~~~~t~~qlg~~~kPIill~ 144 (220)
+|+.-||=||++|+...+. ....|+.++-
T Consensus 60 ~vv~~GGDGTl~evv~~l~-----~~~~~lgviP 88 (300)
T PRK00861 60 LIIASGGDGTLSAVAGALI-----GTDIPLGIIP 88 (300)
T ss_pred EEEEECChHHHHHHHHHHh-----cCCCcEEEEc
Confidence 4556889999999887763 1346787773
No 232
>PRK05920 aromatic acid decarboxylase; Validated
Probab=28.71 E-value=1.3e+02 Score=25.43 Aligned_cols=81 Identities=16% Similarity=0.158 Sum_probs=50.5
Q ss_pred hCCeEEEecCCcccHHHHHHHHHHHHh-------ccCCCcEEEEcCCCCchhH--HHHHHHHHHcCCC-CccccCcEEEc
Q 039983 107 NADCFIALPGGFGTLEELFEVTTWSQL-------GIHNKPVGLINVEGYYDPI--LNFIDKSIDEGFI-YPSQRSIIVSA 176 (220)
Q Consensus 107 ~sda~IvlpGG~GTL~El~~~~t~~ql-------g~~~kPIill~~~g~~~~l--~~~l~~~~~~g~i-~~~~~~~i~~~ 176 (220)
.+|++||.|=..+|+.-+..-++-.-+ -..++|+++.-. ..|..- .+.++.+.+.|.. -+.....+.--
T Consensus 93 ~aD~~vVaPaTantlakiA~GiaD~ll~~~a~~~L~~~~pvvi~P~-~m~~~~~~~~nl~~L~~~G~~ii~P~~g~y~~p 171 (204)
T PRK05920 93 RTDGMVIAPCSMGTLAAIAHGLSDNLIERAADVVLKERRKLILVPR-ETPLSLIHLENMLKLAEAGAIILPAIPAFYHKP 171 (204)
T ss_pred ccCEEEEeeCCHhHHHHHHccccCcHHHHHHHHHHhcCCCEEEEeC-CCCCCHHHHHHHHHHHHCCCEEeCCcccccCCC
Confidence 689999999999999877643221111 124789998854 344432 3345566666642 23334555666
Q ss_pred CCHHHHHHHHHh
Q 039983 177 SNAKELVQKLED 188 (220)
Q Consensus 177 ~d~ee~~~~l~~ 188 (220)
++.++.++++-.
T Consensus 172 ~~~~~~~~f~~~ 183 (204)
T PRK05920 172 QTIDDLVDFVVA 183 (204)
T ss_pred CCHHHHHHHHHH
Confidence 677888887754
No 233
>KOG3974 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=28.67 E-value=4.2e+02 Score=23.90 Aligned_cols=47 Identities=15% Similarity=0.414 Sum_probs=28.1
Q ss_pred HHHHHHHHhCCeEEEecCCccc----HHHHHHHHHHHHhccCCCcEEEEcCCCCc
Q 039983 99 QRKAEMARNADCFIALPGGFGT----LEELFEVTTWSQLGIHNKPVGLINVEGYY 149 (220)
Q Consensus 99 ~Rk~~~~~~sda~IvlpGG~GT----L~El~~~~t~~qlg~~~kPIill~~~g~~ 149 (220)
.+-..++..-+|+|+=|| .|- +-++..++.... ..++|+++ +.+|.|
T Consensus 93 ~~i~k~L~RlhavVIGPG-LGRdp~~~k~i~~iley~~--~~dvP~VI-DaDGL~ 143 (306)
T KOG3974|consen 93 DIIEKLLQRLHAVVIGPG-LGRDPAILKEIAKILEYLR--GKDVPLVI-DADGLW 143 (306)
T ss_pred hHHHHHHhheeEEEECCC-CCCCHHHHHHHHHHHHHHh--cCCCcEEE-cCCceE
Confidence 444457777788888775 554 444444433211 23689865 678888
No 234
>COG0148 Eno Enolase [Carbohydrate transport and metabolism]
Probab=28.59 E-value=2.2e+02 Score=26.98 Aligned_cols=70 Identities=17% Similarity=0.129 Sum_probs=49.5
Q ss_pred HHHHHHHHHhCCeEEEecCCcccHHHHHHHHHHHHhccCCCcEEEEcCCCCchhHHHHHHHHHHcCCCCcc
Q 039983 98 HQRKAEMARNADCFIALPGGFGTLEELFEVTTWSQLGIHNKPVGLINVEGYYDPILNFIDKSIDEGFIYPS 168 (220)
Q Consensus 98 ~~Rk~~~~~~sda~IvlpGG~GTL~El~~~~t~~qlg~~~kPIill~~~g~~~~l~~~l~~~~~~g~i~~~ 168 (220)
.-|+-+=...++++++-|==+|||.|.+++..+.+-.- -+||+-..+..=-|..++-|.-....|+|+-.
T Consensus 318 ~l~~gi~~g~aNaiLIK~NQIGTLTEt~~ai~~A~~~g-y~~viSHRSGETeD~tIAdLAVa~~agqIKTG 387 (423)
T COG0148 318 RLKKGIEKGAANAILIKPNQIGTLTETLEAINLAKDAG-YTAVISHRSGETEDTTIADLAVATNAGQIKTG 387 (423)
T ss_pred HHHHHHHhccCceEEEechhcccHHHHHHHHHHHHHCC-CeEEEecCCCCcccchHHHHHHHhCCCeeecC
Confidence 35566666678999999999999999999988766422 27888776644555666655555566666533
No 235
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=28.58 E-value=2.1e+02 Score=23.79 Aligned_cols=72 Identities=21% Similarity=0.389 Sum_probs=43.0
Q ss_pred HHHHHHHhCCeEEEec--CCcccHHHHHHHHHHHHhccCCCcEEEEcCCCCchhHHHHHHHHHHcCCCCccccCcEEEcC
Q 039983 100 RKAEMARNADCFIALP--GGFGTLEELFEVTTWSQLGIHNKPVGLINVEGYYDPILNFIDKSIDEGFIYPSQRSIIVSAS 177 (220)
Q Consensus 100 Rk~~~~~~sda~Ivlp--GG~GTL~El~~~~t~~qlg~~~kPIill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~ 177 (220)
....+...||++|... .|+|+- +.|++. .++||+.-+..+. .. ++ .+ .....++-.+
T Consensus 271 ~~~~~~~~ad~~i~~~~~~~~~~~--~~Ea~~------~G~pvI~~~~~~~-~~---~~----~~-----~~~g~~~~~~ 329 (377)
T cd03798 271 EVPAYYAAADVFVLPSLREGFGLV--LLEAMA------CGLPVVATDVGGI-PE---II----TD-----GENGLLVPPG 329 (377)
T ss_pred HHHHHHHhcCeeecchhhccCChH--HHHHHh------cCCCEEEecCCCh-HH---Hh----cC-----CcceeEECCC
Confidence 3456667899877653 344443 566665 5899988765332 22 21 11 1123455567
Q ss_pred CHHHHHHHHHhhcCC
Q 039983 178 NAKELVQKLEDYVPS 192 (220)
Q Consensus 178 d~ee~~~~l~~~~~~ 192 (220)
|++++.+.|.+....
T Consensus 330 ~~~~l~~~i~~~~~~ 344 (377)
T cd03798 330 DPEALAEAILRLLAD 344 (377)
T ss_pred CHHHHHHHHHHHhcC
Confidence 999988888876543
No 236
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=28.57 E-value=1.3e+02 Score=25.85 Aligned_cols=38 Identities=21% Similarity=0.260 Sum_probs=21.4
Q ss_pred cCCCceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeE
Q 039983 8 KSRFKRVCVFCGSSPDYKYCYRKAAVDLGNELVSRGLDL 46 (220)
Q Consensus 8 ~~~~~~I~Vfgss~~~~~~~~~~~A~~lG~~lA~~g~~l 46 (220)
++++++|.+++||... +..-...|+.+.+.+.+.|+.+
T Consensus 23 ~~~~~kI~~I~GSlR~-~S~n~~la~~~~~~~~~~g~~v 60 (219)
T TIGR02690 23 KPHIPRILLLYGSLRE-RSYSRLLAEEAARLLGCEGRET 60 (219)
T ss_pred CCCCCEEEEEECCCCC-cchHHHHHHHHHHHHhhcCCEE
Confidence 4556666666665533 3344456666666665555554
No 237
>PF14947 HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_A.
Probab=28.52 E-value=68 Score=22.51 Aligned_cols=41 Identities=17% Similarity=0.425 Sum_probs=33.4
Q ss_pred chhHHHHHHHHHHcCCCCccccCcEEEcCCHHHHHHHHHhhc
Q 039983 149 YDPILNFIDKSIDEGFIYPSQRSIIVSASNAKELVQKLEDYV 190 (220)
Q Consensus 149 ~~~l~~~l~~~~~~g~i~~~~~~~i~~~~d~ee~~~~l~~~~ 190 (220)
|+.+...|+.+.+.|+|.. ....+.+++.-.++++.++++.
T Consensus 33 ~~~~~~yL~~L~~~gLI~~-~~~~Y~lTekG~~~l~~l~~~~ 73 (77)
T PF14947_consen 33 YSTLKKYLKELEEKGLIKK-KDGKYRLTEKGKEFLEELEELI 73 (77)
T ss_dssp HHHHHHHHHHHHHTTSEEE-ETTEEEE-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCeeC-CCCEEEECccHHHHHHHHHHHH
Confidence 6678888899999999944 6788899999999999888763
No 238
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=28.50 E-value=1.8e+02 Score=22.83 Aligned_cols=41 Identities=10% Similarity=0.044 Sum_probs=34.6
Q ss_pred HHHHHHHHHCCCeEEEcCCCcChhHHHHHHHHhcCCcEEEEe
Q 039983 33 VDLGNELVSRGLDLVYGGGSVGLMGLISEEVHRGGRHVLGII 74 (220)
Q Consensus 33 ~~lG~~lA~~g~~lVtGGg~~GlM~ava~gA~~~gG~viGv~ 74 (220)
.-++..|-.+||.+++-|-. =-.+...+.|.+.+..+||+.
T Consensus 17 niv~~~L~~~GfeVidLG~~-v~~e~~v~aa~~~~adiVglS 57 (128)
T cd02072 17 KILDHAFTEAGFNVVNLGVL-SPQEEFIDAAIETDADAILVS 57 (128)
T ss_pred HHHHHHHHHCCCEEEECCCC-CCHHHHHHHHHHcCCCEEEEe
Confidence 45566777899999998876 677999999999999999993
No 239
>PRK05854 short chain dehydrogenase; Provisional
Probab=28.49 E-value=83 Score=27.65 Aligned_cols=33 Identities=21% Similarity=0.300 Sum_probs=19.8
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEcCCC
Q 039983 12 KRVCVFCGSSPDYKYCYRKAAVDLGNELVSRGLDLVYGGGS 52 (220)
Q Consensus 12 ~~I~Vfgss~~~~~~~~~~~A~~lG~~lA~~g~~lVtGGg~ 52 (220)
+++-|-|+++ + ..+++++.|+++|+.|+..+..
T Consensus 15 k~~lITGas~-G-------IG~~~a~~La~~G~~Vil~~R~ 47 (313)
T PRK05854 15 KRAVVTGASD-G-------LGLGLARRLAAAGAEVILPVRN 47 (313)
T ss_pred CEEEEeCCCC-h-------HHHHHHHHHHHCCCEEEEEeCC
Confidence 4566666654 2 2345666677788887655443
No 240
>PF00710 Asparaginase: Asparaginase; InterPro: IPR006034 Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma []. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma [, ] - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die. Glutaminase, a similar enzyme, catalyses the deaminination of glutamine to glutamic acid and an ammonium ion []. Both enzymes are homotetramers []: two threonine residues in the N-terminal half of the proteins are involved in the catalytic activity.; GO: 0006520 cellular amino acid metabolic process; PDB: 1HFW_C 1HG1_B 1JSL_C 1HFK_A 1JSR_C 1HFJ_C 1HG0_D 1O7J_A 1ZQ1_A 1JJA_D ....
Probab=28.32 E-value=1.4e+02 Score=26.76 Aligned_cols=37 Identities=24% Similarity=0.191 Sum_probs=25.1
Q ss_pred HhCCeEEEecCCcccHHHHHHHHHHHHhccCCCcEEEEc
Q 039983 106 RNADCFIALPGGFGTLEELFEVTTWSQLGIHNKPVGLIN 144 (220)
Q Consensus 106 ~~sda~IvlpGG~GTL~El~~~~t~~qlg~~~kPIill~ 144 (220)
+..|+|||+-| .-||+|....+.+.- ...+|||||-+
T Consensus 71 ~~~~GvVVtHG-TDTme~tA~~Ls~~l-~~l~kPVVlTG 107 (313)
T PF00710_consen 71 DDYDGVVVTHG-TDTMEETAFFLSLLL-DNLDKPVVLTG 107 (313)
T ss_dssp TTCSEEEEE---STTHHHHHHHHHHHE-ES-SSEEEEE-
T ss_pred HhcCeEEEecC-chHHHHHHHHHHHHh-cCCCCCEEEeC
Confidence 44789888765 899999887776432 22379999985
No 241
>PRK14072 6-phosphofructokinase; Provisional
Probab=28.31 E-value=2.1e+02 Score=26.88 Aligned_cols=56 Identities=14% Similarity=0.183 Sum_probs=36.8
Q ss_pred EEEEcCCCCCC-----CHHHHHHHHHHHHHHHHCCCe-EEEcCCCcChhHHHHHHHH---hcC--CcEEEE
Q 039983 14 VCVFCGSSPDY-----KYCYRKAAVDLGNELVSRGLD-LVYGGGSVGLMGLISEEVH---RGG--RHVLGI 73 (220)
Q Consensus 14 I~Vfgss~~~~-----~~~~~~~A~~lG~~lA~~g~~-lVtGGg~~GlM~ava~gA~---~~g--G~viGv 73 (220)
=++.|+||... +++.+ .++.+.|.+.++. ||+=||. |-|..+.+=+. +.| -.||||
T Consensus 72 Gt~LgssR~~~~~~~~~~~~~---~~~~~~l~~~~Id~LivIGGd-gS~~~a~~L~e~~~~~g~~i~vIgI 138 (416)
T PRK14072 72 SGALGSCRYKLKSLEEDRAEY---ERLLEVFKAHDIGYFFYNGGN-DSMDTALKVSQLAKKMGYPIRCIGI 138 (416)
T ss_pred CeEeccCCCCCcccccChHHH---HHHHHHHHHcCCCEEEEECCh-HHHHHHHHHHHHHHHhCCCceEEEe
Confidence 46888888653 23333 5566677777765 5566777 99988866443 355 688888
No 242
>cd01412 SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E. coli CobB; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. CobB is a bacterial sirtuin that deacetylates acetyl-CoA synthetase at an active site lysine to stimulate its enzymatic activity.
Probab=28.26 E-value=2.6e+02 Score=23.44 Aligned_cols=67 Identities=18% Similarity=0.092 Sum_probs=39.2
Q ss_pred HHHHHHHHhCCeEEEecCCcccHHHHHHHHHHHHh-ccCCCcEEEEcCCCCchhHHHHHHHHHHcCCCCccccCcEEEcC
Q 039983 99 QRKAEMARNADCFIALPGGFGTLEELFEVTTWSQL-GIHNKPVGLINVEGYYDPILNFIDKSIDEGFIYPSQRSIIVSAS 177 (220)
Q Consensus 99 ~Rk~~~~~~sda~IvlpGG~GTL~El~~~~t~~ql-g~~~kPIill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~ 177 (220)
++....++.+|.+|+++ -.++.. -++.+... ...+.|++++|.+.-. ++ ...-+.+..
T Consensus 156 ~~~~~~~~~~dl~lvlG-Tsl~v~---p~~~l~~~~~~~~~~~i~iN~~~~~---------------~~--~~~~~~i~g 214 (224)
T cd01412 156 LEAVEALAKADLFLVIG-TSGVVY---PAAGLPEEAKERGARVIEINPEPTP---------------LS--PIADFAFRG 214 (224)
T ss_pred HHHHHHHHcCCEEEEEC-cCccch---hHHHHHHHHHHCCCeEEEECCCCCC---------------CC--CcCCEEEEC
Confidence 44455567899888865 333333 22222222 2357899999975221 11 223467777
Q ss_pred CHHHHHHHH
Q 039983 178 NAKELVQKL 186 (220)
Q Consensus 178 d~ee~~~~l 186 (220)
+..+++..|
T Consensus 215 ~~~~~l~~l 223 (224)
T cd01412 215 KAGEVLPAL 223 (224)
T ss_pred CHHHHHHHh
Confidence 898888765
No 243
>PLN02740 Alcohol dehydrogenase-like
Probab=28.25 E-value=1.7e+02 Score=26.30 Aligned_cols=83 Identities=24% Similarity=0.338 Sum_probs=42.8
Q ss_pred CCeEEEcCCCcChhHHHHHHHHhcCC-cEEEEeCCcccccccCC-CCCceEeecC----CHHHHHHHHHH-hCCeEEEec
Q 039983 43 GLDLVYGGGSVGLMGLISEEVHRGGR-HVLGIIPKALMKKELTG-VTLGEVKPVD----HMHQRKAEMAR-NADCFIALP 115 (220)
Q Consensus 43 g~~lVtGGg~~GlM~ava~gA~~~gG-~viGv~P~~~~~~e~~~-~~~~~~~~~~----~~~~Rk~~~~~-~sda~Ivlp 115 (220)
...+|.|+|+.|++ +..-|+..|. +|+.+..... ..+... -..+.++... ++.++-..+.. ..|+++=..
T Consensus 200 ~~VlV~G~G~vG~~--a~q~ak~~G~~~Vi~~~~~~~-r~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~dvvid~~ 276 (381)
T PLN02740 200 SSVAIFGLGAVGLA--VAEGARARGASKIIGVDINPE-KFEKGKEMGITDFINPKDSDKPVHERIREMTGGGVDYSFECA 276 (381)
T ss_pred CEEEEECCCHHHHH--HHHHHHHCCCCcEEEEcCChH-HHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEECC
Confidence 46688988776666 4466777887 5888743211 111110 0112222221 13332222221 367777777
Q ss_pred CCcccHHHHHHHH
Q 039983 116 GGFGTLEELFEVT 128 (220)
Q Consensus 116 GG~GTL~El~~~~ 128 (220)
|+..++.+.+..+
T Consensus 277 G~~~~~~~a~~~~ 289 (381)
T PLN02740 277 GNVEVLREAFLST 289 (381)
T ss_pred CChHHHHHHHHhh
Confidence 7766777665544
No 244
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=28.12 E-value=1.6e+02 Score=25.77 Aligned_cols=33 Identities=24% Similarity=0.244 Sum_probs=22.7
Q ss_pred EEEecCCcccHHHHHHHHHHHHhccCCCcEEEEc
Q 039983 111 FIALPGGFGTLEELFEVTTWSQLGIHNKPVGLIN 144 (220)
Q Consensus 111 ~IvlpGG~GTL~El~~~~t~~qlg~~~kPIill~ 144 (220)
+|+.-||=||++|+...+.-... ....|+.++-
T Consensus 55 ~vv~~GGDGTi~ev~ngl~~~~~-~~~~~lgiiP 87 (293)
T TIGR03702 55 TVIAGGGDGTLREVATALAQIRD-DAAPALGLLP 87 (293)
T ss_pred EEEEEcCChHHHHHHHHHHhhCC-CCCCcEEEEc
Confidence 66788999999999987732111 1235788884
No 245
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=28.02 E-value=1.1e+02 Score=23.49 Aligned_cols=47 Identities=23% Similarity=0.253 Sum_probs=25.3
Q ss_pred HHHHHHHHhCCeEEEe-cCCcccHHHHHHH-HHHHH---hc-cCCCcEEEEcC
Q 039983 99 QRKAEMARNADCFIAL-PGGFGTLEELFEV-TTWSQ---LG-IHNKPVGLINV 145 (220)
Q Consensus 99 ~Rk~~~~~~sda~Ivl-pGG~GTL~El~~~-~t~~q---lg-~~~kPIill~~ 145 (220)
.+-.--+..||++|+. |==.|++.-.+.. +.+.. .+ ..+||+.++..
T Consensus 62 ~~~~~~l~~aD~iI~~sP~y~~~~s~~lK~~lD~~~~~~~~~~~~K~~~~i~~ 114 (152)
T PF03358_consen 62 QELYDKLKEADGIIFASPVYNGSVSGQLKNFLDRLSCWFRRALRGKPVAIIAV 114 (152)
T ss_dssp HHHHHHHHHSSEEEEEEEEBTTBE-HHHHHHHHTHHHTHTTTTTTSEEEEEEE
T ss_pred HHHHhceecCCeEEEeecEEcCcCChhhhHHHHHhccccccccCCCEEEEEEE
Confidence 3334445689976665 6555554443333 33332 22 35799988843
No 246
>PRK06194 hypothetical protein; Provisional
Probab=27.98 E-value=3.1e+02 Score=23.10 Aligned_cols=60 Identities=18% Similarity=0.200 Sum_probs=0.0
Q ss_pred CchhhhhcCCCceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEcCCCcChhHHHHHHHHhcCCcEEEE
Q 039983 1 MEEKKEAKSRFKRVCVFCGSSPDYKYCYRKAAVDLGNELVSRGLDLVYGGGSVGLMGLISEEVHRGGRHVLGI 73 (220)
Q Consensus 1 ~~~~~~~~~~~~~I~Vfgss~~~~~~~~~~~A~~lG~~lA~~g~~lVtGGg~~GlM~ava~gA~~~gG~viGv 73 (220)
|+.|. .++|-|.|+++ -..+.+++.|+++|+.|+.-+-.....+.........+..+..+
T Consensus 1 m~~~~-----~k~vlVtGasg--------gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~ 60 (287)
T PRK06194 1 MKDFA-----GKVAVITGAAS--------GFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGAEVLGV 60 (287)
T ss_pred CcCCC-----CCEEEEeCCcc--------HHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEE
No 247
>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes. This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o
Probab=27.84 E-value=1.5e+02 Score=25.92 Aligned_cols=69 Identities=17% Similarity=0.147 Sum_probs=37.7
Q ss_pred eEEEecCCcccHHHHHHHHHHHHhc-cCCCcEEEEc---CCCCchhHHHHHHHHHHcCCCCccccCcEEEc--CCHHHHH
Q 039983 110 CFIALPGGFGTLEELFEVTTWSQLG-IHNKPVGLIN---VEGYYDPILNFIDKSIDEGFIYPSQRSIIVSA--SNAKELV 183 (220)
Q Consensus 110 a~IvlpGG~GTL~El~~~~t~~qlg-~~~kPIill~---~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~--~d~ee~~ 183 (220)
|+|+|-||.||= +| ..+||.+=++ ..-+.+...+.+..+...- -.......++++ ++.++..
T Consensus 2 a~viLaGG~GtR-----------Lg~~~PK~~~~i~~~~gk~~l~~~~~~i~~~~~~~-~~~~~Ip~~imts~~t~~~t~ 69 (266)
T cd04180 2 AVVLLAGGLGTR-----------LGKDGPKSSTDVGLPSGQCFLQLIGEKILTLQEID-LYSCKIPEQLMNSKYTHEKTQ 69 (266)
T ss_pred EEEEECCCCccc-----------cCCCCCceeeeecCCCCCcHHHHHHHHHHHHHHHh-hcCCCCCEEEEcCchhHHHHH
Confidence 789999999994 13 2356665443 3346666666654432210 001112333333 4566788
Q ss_pred HHHHhhc
Q 039983 184 QKLEDYV 190 (220)
Q Consensus 184 ~~l~~~~ 190 (220)
++++++.
T Consensus 70 ~~l~~~~ 76 (266)
T cd04180 70 CYFEKIN 76 (266)
T ss_pred HHHHHcC
Confidence 8888765
No 248
>PLN02565 cysteine synthase
Probab=27.70 E-value=4.5e+02 Score=23.55 Aligned_cols=45 Identities=9% Similarity=0.020 Sum_probs=28.7
Q ss_pred HHHHHHHHHH-HCCCeEEEcCCCcChhHHHHHHHHhcC--CcEEEEeCC
Q 039983 31 AAVDLGNELV-SRGLDLVYGGGSVGLMGLISEEVHRGG--RHVLGIIPK 76 (220)
Q Consensus 31 ~A~~lG~~lA-~~g~~lVtGGg~~GlM~ava~gA~~~g--G~viGv~P~ 76 (220)
.+.++-+.+. +-++.++.-|++ |++..++++.++.+ -++|||=|.
T Consensus 161 ~a~Ei~~q~~~~~d~vv~~vG~G-G~l~Gi~~~lk~~~p~~kvi~Vep~ 208 (322)
T PLN02565 161 TGPEIWKGTGGKVDAFVSGIGTG-GTITGAGKYLKEQNPDIKLYGVEPV 208 (322)
T ss_pred HHHHHHHhcCCCCCEEEEcCCch-HHHHHHHHHHHHhCCCCEEEEEecC
Confidence 3444444442 224445555555 89999999998865 488999774
No 249
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=27.69 E-value=2.4e+02 Score=26.18 Aligned_cols=74 Identities=16% Similarity=0.301 Sum_probs=43.4
Q ss_pred HHHHHHHHhCCeEEEec--CCcccHHHHHHHHHHHHhccCCCcEEEEcCCCCchhHHHHHHHHHHcCCCCccccCcEEEc
Q 039983 99 QRKAEMARNADCFIALP--GGFGTLEELFEVTTWSQLGIHNKPVGLINVEGYYDPILNFIDKSIDEGFIYPSQRSIIVSA 176 (220)
Q Consensus 99 ~Rk~~~~~~sda~Ivlp--GG~GTL~El~~~~t~~qlg~~~kPIill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~ 176 (220)
+....++..||++|.-. .|+|.. ++|+++ .++|||.-+..|. ..++ + +. .......++-.
T Consensus 323 ~ev~~~~~~aDv~V~pS~~E~~g~~--vlEAmA------~G~PVI~s~~gg~-~eiv---~----~~--~~~~~G~lv~~ 384 (465)
T PLN02871 323 DELSQAYASGDVFVMPSESETLGFV--VLEAMA------SGVPVVAARAGGI-PDII---P----PD--QEGKTGFLYTP 384 (465)
T ss_pred HHHHHHHHHCCEEEECCcccccCcH--HHHHHH------cCCCEEEcCCCCc-Hhhh---h----cC--CCCCceEEeCC
Confidence 34556778899988543 344432 567776 5899998876543 2221 1 10 00123344445
Q ss_pred CCHHHHHHHHHhhc
Q 039983 177 SNAKELVQKLEDYV 190 (220)
Q Consensus 177 ~d~ee~~~~l~~~~ 190 (220)
+|++++.+.|.+..
T Consensus 385 ~d~~~la~~i~~ll 398 (465)
T PLN02871 385 GDVDDCVEKLETLL 398 (465)
T ss_pred CCHHHHHHHHHHHH
Confidence 78888888877654
No 250
>KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=27.38 E-value=74 Score=30.04 Aligned_cols=36 Identities=39% Similarity=0.488 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHCCCeEEEcCC----------CcChhHHHHHHHHhc
Q 039983 31 AAVDLGNELVSRGLDLVYGGG----------SVGLMGLISEEVHRG 66 (220)
Q Consensus 31 ~A~~lG~~lA~~g~~lVtGGg----------~~GlM~ava~gA~~~ 66 (220)
-|+.|+..|-++||.|||||- +.|+.++.++-+++.
T Consensus 329 Nakala~~l~~~Gy~lvtgGTDnHlvLvDLr~~G~dGarvE~vle~ 374 (477)
T KOG2467|consen 329 NAKALASALISRGYKLVTGGTDNHLVLVDLRPKGVDGARVEKVLEL 374 (477)
T ss_pred HHHHHHHHHHHcCceEecCCccceEEEEeccccCCchHHHHHHHHH
Confidence 467778888889999999984 358888888877774
No 251
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=27.34 E-value=5.6e+02 Score=24.57 Aligned_cols=141 Identities=17% Similarity=0.118 Sum_probs=70.5
Q ss_pred hhhhcCCCceEEEEcCCCCCCCHHHHHHHHHHHHHHHHC--CCeEEEcCCC-------cChhHHHHHHHHhcCCcEEEEe
Q 039983 4 KKEAKSRFKRVCVFCGSSPDYKYCYRKAAVDLGNELVSR--GLDLVYGGGS-------VGLMGLISEEVHRGGRHVLGII 74 (220)
Q Consensus 4 ~~~~~~~~~~I~Vfgss~~~~~~~~~~~A~~lG~~lA~~--g~~lVtGGg~-------~GlM~ava~gA~~~gG~viGv~ 74 (220)
...++...+++-..|+-.....+ ......++-+.|.+. |..+|+=|.- .-...++.++....+-++|=-.
T Consensus 257 ~d~~rp~~p~v~~vGgi~~~~~~-~~~l~~~l~~fl~~~~~g~V~vS~GS~~~~~~~~~~~~~~~l~a~~~l~~~viw~~ 335 (507)
T PHA03392 257 FDNNRPVPPSVQYLGGLHLHKKP-PQPLDDYLEEFLNNSTNGVVYVSFGSSIDTNDMDNEFLQMLLRTFKKLPYNVLWKY 335 (507)
T ss_pred ccCCCCCCCCeeeecccccCCCC-CCCCCHHHHHHHhcCCCcEEEEECCCCCcCCCCCHHHHHHHHHHHHhCCCeEEEEE
Confidence 34456666777777774321100 001123444555444 4555554442 1234566666655665544322
Q ss_pred CCcccccccCCCCCceEeecCCHHHHHHHHHHh--CCeEEEecCCcccHHHHHHHHHHHHhccCCCcEEEEcCCCCchhH
Q 039983 75 PKALMKKELTGVTLGEVKPVDHMHQRKAEMARN--ADCFIALPGGFGTLEELFEVTTWSQLGIHNKPVGLINVEGYYDPI 152 (220)
Q Consensus 75 P~~~~~~e~~~~~~~~~~~~~~~~~Rk~~~~~~--sda~IvlpGG~GTL~El~~~~t~~qlg~~~kPIill~~~g~~~~l 152 (220)
.....+...+ ..+.+.+-+..+ .++.+ +++| |--||.||..|.. .+++|++++. -|+|..
T Consensus 336 ~~~~~~~~~p----~Nv~i~~w~Pq~--~lL~hp~v~~f-ItHGG~~s~~Eal---------~~GvP~v~iP--~~~DQ~ 397 (507)
T PHA03392 336 DGEVEAINLP----ANVLTQKWFPQR--AVLKHKNVKAF-VTQGGVQSTDEAI---------DALVPMVGLP--MMGDQF 397 (507)
T ss_pred CCCcCcccCC----CceEEecCCCHH--HHhcCCCCCEE-EecCCcccHHHHH---------HcCCCEEECC--CCccHH
Confidence 2111110111 234455555543 33333 4444 4567799987753 2689999985 366665
Q ss_pred HHHHHHHHHcCC
Q 039983 153 LNFIDKSIDEGF 164 (220)
Q Consensus 153 ~~~l~~~~~~g~ 164 (220)
.+ .+++.+.|.
T Consensus 398 ~N-a~rv~~~G~ 408 (507)
T PHA03392 398 YN-TNKYVELGI 408 (507)
T ss_pred HH-HHHHHHcCc
Confidence 44 355666664
No 252
>PRK07308 flavodoxin; Validated
Probab=27.34 E-value=1.3e+02 Score=23.32 Aligned_cols=10 Identities=0% Similarity=0.095 Sum_probs=5.1
Q ss_pred EEEEcCCCCC
Q 039983 14 VCVFCGSSPD 23 (220)
Q Consensus 14 I~Vfgss~~~ 23 (220)
..|+|++..+
T Consensus 51 ~vi~g~~t~g 60 (146)
T PRK07308 51 IAIVATYTYG 60 (146)
T ss_pred EEEEEeCccC
Confidence 4455655543
No 253
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=27.25 E-value=1.3e+02 Score=26.30 Aligned_cols=36 Identities=14% Similarity=0.218 Sum_probs=24.9
Q ss_pred eEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEE
Q 039983 13 RVCVFCGSSPDYKYCYRKAAVDLGNELVSRGLDLVY 48 (220)
Q Consensus 13 ~I~Vfgss~~~~~~~~~~~A~~lG~~lA~~g~~lVt 48 (220)
+|+|.+|.....++.-...++.+.+.|.+.||.++.
T Consensus 2 ~v~v~~gg~s~e~~~sl~s~~~i~~al~~~g~~~~~ 37 (299)
T PRK14571 2 RVALLMGGVSREREISLRSGERVKKALEKLGYEVTV 37 (299)
T ss_pred eEEEEeCCCCCCccchHHHHHHHHHHHHHcCCeEEE
Confidence 466555433333555568899999999999998643
No 254
>TIGR02467 CbiE precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit. This model recognizes the CbiE methylase which is responsible, in part (along with CbiT), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiT subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=27.25 E-value=3.5e+02 Score=22.17 Aligned_cols=112 Identities=13% Similarity=0.109 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHCCCeEEEcCCCcChhHHHHHHHHhcCCcEEEEeCCcccc---cccCCCCCceE--eec--CCHHHHHH
Q 039983 30 KAAVDLGNELVSRGLDLVYGGGSVGLMGLISEEVHRGGRHVLGIIPKALMK---KELTGVTLGEV--KPV--DHMHQRKA 102 (220)
Q Consensus 30 ~~A~~lG~~lA~~g~~lVtGGg~~GlM~ava~gA~~~gG~viGv~P~~~~~---~e~~~~~~~~~--~~~--~~~~~Rk~ 102 (220)
+....+.+........+++.|=| ++-+....-+...+..-+=|+|+.... .....-++.+. +.. .....+..
T Consensus 55 ~~~~~i~~~~~g~~vv~l~~GDP-~~~~~~~~l~~~~~~~~v~iiPGiSs~~~a~a~~g~~l~~~~~is~~~~~~~~~~~ 133 (204)
T TIGR02467 55 ELLEFIAATRKEKRVVVLASGDP-LFYGIGRTLAERLGKERLEIIPGISSVQYAFARLGLPWQDAVVISLHGRELDELLL 133 (204)
T ss_pred HHHHHHHHhcCCCCEEEEecCCC-cccccHHHHHHhCCCCcEEEeCChHHHHHHHHHcCCChhhCeEEEeeCCCCcHHHH
Confidence 34444444332234556677777 888877666666655457777875210 00011112221 111 11222222
Q ss_pred HHHHhCCeEEEecCCcccHHHHHHHHHHHHhccCCC-cEEEEc
Q 039983 103 EMARNADCFIALPGGFGTLEELFEVTTWSQLGIHNK-PVGLIN 144 (220)
Q Consensus 103 ~~~~~sda~IvlpGG~GTL~El~~~~t~~qlg~~~k-PIill~ 144 (220)
..+...+-+|++.++-.++.++.+.+. ..|..+. |+++..
T Consensus 134 ~~l~~~~~~vvl~~~~~~~~~i~~~L~--~~g~~~~~~v~v~~ 174 (204)
T TIGR02467 134 ALLRGHRKVAVLTDPRNGPAEIARELI--ELGIGGSYELTVGE 174 (204)
T ss_pred HHHhcCCcEEEEeCCCCCHHHHHHHHH--HCCCCCCeEEEEEc
Confidence 344567778888887889999988764 3343333 888774
No 255
>PRK09271 flavodoxin; Provisional
Probab=27.25 E-value=1.2e+02 Score=24.14 Aligned_cols=31 Identities=16% Similarity=0.227 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeE
Q 039983 13 RVCVFCGSSPDYKYCYRKAAVDLGNELVSRGLDL 46 (220)
Q Consensus 13 ~I~Vfgss~~~~~~~~~~~A~~lG~~lA~~g~~l 46 (220)
+|.|+.+|..++ -.+.|+.+++.|.+.|+.+
T Consensus 2 kv~IvY~S~tGn---Te~~A~~ia~~l~~~g~~v 32 (160)
T PRK09271 2 RILLAYASLSGN---TREVAREIEERCEEAGHEV 32 (160)
T ss_pred eEEEEEEcCCch---HHHHHHHHHHHHHhCCCee
Confidence 456666666553 3456777777777777654
No 256
>PRK07035 short chain dehydrogenase; Provisional
Probab=27.21 E-value=86 Score=25.99 Aligned_cols=31 Identities=16% Similarity=0.158 Sum_probs=17.8
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEcC
Q 039983 12 KRVCVFCGSSPDYKYCYRKAAVDLGNELVSRGLDLVYGG 50 (220)
Q Consensus 12 ~~I~Vfgss~~~~~~~~~~~A~~lG~~lA~~g~~lVtGG 50 (220)
++|.|.|+++- ....+++.|++.|+.|+--+
T Consensus 9 k~vlItGas~g--------IG~~l~~~l~~~G~~Vi~~~ 39 (252)
T PRK07035 9 KIALVTGASRG--------IGEAIAKLLAQQGAHVIVSS 39 (252)
T ss_pred CEEEEECCCcH--------HHHHHHHHHHHCCCEEEEEe
Confidence 45666666552 23455666666777665433
No 257
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=27.10 E-value=3.7e+02 Score=22.69 Aligned_cols=66 Identities=18% Similarity=0.241 Sum_probs=40.8
Q ss_pred HHHHHhCCeEEEec---CCcccHHHHHHHHHHHHhccCCCcEEEEcCCCCchhHHHHHHHHHHcCCCCccccCcEEEcCC
Q 039983 102 AEMARNADCFIALP---GGFGTLEELFEVTTWSQLGIHNKPVGLINVEGYYDPILNFIDKSIDEGFIYPSQRSIIVSASN 178 (220)
Q Consensus 102 ~~~~~~sda~Ivlp---GG~GTL~El~~~~t~~qlg~~~kPIill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~d 178 (220)
..+...+|++|... -|+|.. ++|+++ .++|||.-+..|. ..+ +.++ ..-+++++
T Consensus 238 ~~~~~~~d~~v~ps~~~E~~~~~--~lEAma------~G~PvI~~~~~~~-~e~-------i~~~-------~~g~l~~~ 294 (335)
T cd03802 238 AELLGNARALLFPILWEEPFGLV--MIEAMA------CGTPVIAFRRGAV-PEV-------VEDG-------VTGFLVDS 294 (335)
T ss_pred HHHHHhCcEEEeCCcccCCcchH--HHHHHh------cCCCEEEeCCCCc-hhh-------eeCC-------CcEEEeCC
Confidence 45667899888752 566753 677776 5899999886543 221 1111 11223445
Q ss_pred HHHHHHHHHhhc
Q 039983 179 AKELVQKLEDYV 190 (220)
Q Consensus 179 ~ee~~~~l~~~~ 190 (220)
++++.+.|.+..
T Consensus 295 ~~~l~~~l~~l~ 306 (335)
T cd03802 295 VEELAAAVARAD 306 (335)
T ss_pred HHHHHHHHHHHh
Confidence 888888887653
No 258
>PRK07454 short chain dehydrogenase; Provisional
Probab=27.06 E-value=3.5e+02 Score=22.07 Aligned_cols=66 Identities=14% Similarity=0.094 Sum_probs=0.0
Q ss_pred CCCceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEcCCCcChhHHHHHHHHhcCCcEEEEeCCcccccc
Q 039983 9 SRFKRVCVFCGSSPDYKYCYRKAAVDLGNELVSRGLDLVYGGGSVGLMGLISEEVHRGGRHVLGIIPKALMKKE 82 (220)
Q Consensus 9 ~~~~~I~Vfgss~~~~~~~~~~~A~~lG~~lA~~g~~lVtGGg~~GlM~ava~gA~~~gG~viGv~P~~~~~~e 82 (220)
..++++.|.|+++ ...+.+.+.|+++|+.|+.-.-...-...+.....+.++.+.-+..+...+..
T Consensus 4 ~~~k~vlItG~sg--------~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 69 (241)
T PRK07454 4 NSMPRALITGASS--------GIGKATALAFAKAGWDLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEA 69 (241)
T ss_pred CCCCEEEEeCCCc--------hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHH
No 259
>PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase. Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group [] and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 2WC1_A 2FVX_A 2FOX_A 6NUL_A 1FVX_A 2FAX_A 1FLN_A 1FLA_A 4NLL_A 2FDX_A ....
Probab=27.05 E-value=71 Score=24.34 Aligned_cols=38 Identities=26% Similarity=0.130 Sum_probs=26.7
Q ss_pred CCCceEEEEcC-CCCCCCHHHHHHHHHHHHHHHHCCCeEEE
Q 039983 9 SRFKRVCVFCG-SSPDYKYCYRKAAVDLGNELVSRGLDLVY 48 (220)
Q Consensus 9 ~~~~~I~Vfgs-s~~~~~~~~~~~A~~lG~~lA~~g~~lVt 48 (220)
.+.++++|||. ++.. . .|...++.|-+.|.+.|..++.
T Consensus 85 l~~~~~avfg~Gd~~~-~-~f~~~~k~l~~~l~~~G~~~~~ 123 (143)
T PF00258_consen 85 LKGKKYAVFGLGDSGY-G-GFCAAAKKLDERLEELGAKRVG 123 (143)
T ss_dssp CTTCEEEEEEEEETTS-S-TTTHHHHHHHHHHHHTTEEEES
T ss_pred cccceeeeeecCCccc-h-hhhhHHHHHHHHHHHCCCEEEE
Confidence 34567777762 3322 2 2888899999999999888775
No 260
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=27.01 E-value=2.5e+02 Score=24.02 Aligned_cols=68 Identities=12% Similarity=0.134 Sum_probs=41.3
Q ss_pred HHHHHhCCeEEEec--CCcccHHHHHHHHHHHHhccCCCcEEEEcCCCCchhHHHHHHHHHHcCCCCccccCcEEEcCCH
Q 039983 102 AEMARNADCFIALP--GGFGTLEELFEVTTWSQLGIHNKPVGLINVEGYYDPILNFIDKSIDEGFIYPSQRSIIVSASNA 179 (220)
Q Consensus 102 ~~~~~~sda~Ivlp--GG~GTL~El~~~~t~~qlg~~~kPIill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~d~ 179 (220)
..+...||++|.-. .|+|.. ++|+++ .++|||.-+..+. .. .+ .. ....+...+++
T Consensus 261 ~~~~~~adi~v~ps~~E~~~~~--~lEAma------~G~PvI~s~~~~~-~~---~i---------~~-~~~~~~~~~~~ 318 (358)
T cd03812 261 PELLQAMDVFLFPSLYEGLPLV--LIEAQA------SGLPCILSDTITK-EV---DL---------TD-LVKFLSLDESP 318 (358)
T ss_pred HHHHHhcCEEEecccccCCCHH--HHHHHH------hCCCEEEEcCCch-hh---hh---------cc-CccEEeCCCCH
Confidence 34678899887543 233332 677776 5899999876442 22 11 11 12334445667
Q ss_pred HHHHHHHHhhcC
Q 039983 180 KELVQKLEDYVP 191 (220)
Q Consensus 180 ee~~~~l~~~~~ 191 (220)
+++.+.|.+...
T Consensus 319 ~~~a~~i~~l~~ 330 (358)
T cd03812 319 EIWAEEILKLKS 330 (358)
T ss_pred HHHHHHHHHHHh
Confidence 999888887653
No 261
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=27.00 E-value=4.9e+02 Score=23.77 Aligned_cols=130 Identities=16% Similarity=0.193 Sum_probs=69.5
Q ss_pred CCHHHHHHHHHHHHHHHHCCCeEEEcCCCcChhH---HHHHHHHhcCCcE-EEEeCCc-------ccccccC---CCCCc
Q 039983 24 YKYCYRKAAVDLGNELVSRGLDLVYGGGSVGLMG---LISEEVHRGGRHV-LGIIPKA-------LMKKELT---GVTLG 89 (220)
Q Consensus 24 ~~~~~~~~A~~lG~~lA~~g~~lVtGGg~~GlM~---ava~gA~~~gG~v-iGv~P~~-------~~~~e~~---~~~~~ 89 (220)
||+.. +...+.+-..|+.|..+|. |+++|. .+-|.+++..|.. ++|+... +-|...+ ...+.
T Consensus 132 ND~Tl-~~L~k~Als~A~AGADiVA---PSdMMDGrV~aIR~aLd~~g~~~v~ImsYsaKyaSafYGPFRdAa~Sap~~g 207 (314)
T cd00384 132 NDATL-ELLAKIAVSHAEAGADIVA---PSDMMDGRVAAIREALDEAGFSDVPIMSYSAKYASAFYGPFRDAADSAPSFG 207 (314)
T ss_pred cHHHH-HHHHHHHHHHHHcCCCeee---cccccccHHHHHHHHHHHCCCCCCceeecHHHhhhhccchHHHHhhcCCCCC
Confidence 44444 4455667778999999995 557775 3456677777754 6775321 1121110 00111
Q ss_pred eE-eecCCH-------HHHHHHHHHhCCeEEEecCCcccHHHHHHHHHHHHhccCCCcEEEEcCCCCchhHHHHHHHHHH
Q 039983 90 EV-KPVDHM-------HQRKAEMARNADCFIALPGGFGTLEELFEVTTWSQLGIHNKPVGLINVEGYYDPILNFIDKSID 161 (220)
Q Consensus 90 ~~-~~~~~~-------~~Rk~~~~~~sda~IvlpGG~GTL~El~~~~t~~qlg~~~kPIill~~~g~~~~l~~~l~~~~~ 161 (220)
+- -.-.+. .+=..-+.+-+|.+.|=||.. -||=+..+- ...+.|+..+++.|=|. .++....
T Consensus 208 DRktYQmdpan~~eAlre~~~D~~EGAD~lMVKPal~-YLDIi~~~k-----~~~~~PvaaYqVSGEYa----MikaAa~ 277 (314)
T cd00384 208 DRKTYQMDPANRREALREVELDIEEGADILMVKPALA-YLDIIRDVR-----ERFDLPVAAYNVSGEYA----MIKAAAK 277 (314)
T ss_pred CccccCCCCCCHHHHHHHHHhhHHhCCCEEEEcCCch-HHHHHHHHH-----HhcCCCEEEEEccHHHH----HHHHHHH
Confidence 10 000111 122223445699999999842 222211111 12479999999877553 4455667
Q ss_pred cCCCCc
Q 039983 162 EGFIYP 167 (220)
Q Consensus 162 ~g~i~~ 167 (220)
.|.++.
T Consensus 278 ~G~id~ 283 (314)
T cd00384 278 NGWIDE 283 (314)
T ss_pred cCCccH
Confidence 787764
No 262
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=26.93 E-value=84 Score=27.79 Aligned_cols=31 Identities=19% Similarity=0.176 Sum_probs=22.7
Q ss_pred CCeEEEcCCCcChhHHHHHHHHhcCCcEEEEeC
Q 039983 43 GLDLVYGGGSVGLMGLISEEVHRGGRHVLGIIP 75 (220)
Q Consensus 43 g~~lVtGGg~~GlM~ava~gA~~~gG~viGv~P 75 (220)
...+|+|+|+.|++ +..-|+..|.+|+.+..
T Consensus 167 ~~VlV~G~g~iG~~--a~~~a~~~G~~vi~~~~ 197 (329)
T TIGR02822 167 GRLGLYGFGGSAHL--TAQVALAQGATVHVMTR 197 (329)
T ss_pred CEEEEEcCCHHHHH--HHHHHHHCCCeEEEEeC
Confidence 46788998766654 45678888888888754
No 263
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=26.87 E-value=1.3e+02 Score=25.08 Aligned_cols=27 Identities=0% Similarity=-0.167 Sum_probs=13.7
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHHHHC
Q 039983 14 VCVFCGSSPDYKYCYRKAAVDLGNELVSR 42 (220)
Q Consensus 14 I~Vfgss~~~~~~~~~~~A~~lG~~lA~~ 42 (220)
|+|.-..- .++-+.+..+.+-+.+.+.
T Consensus 2 Ig~i~~~~--~~~~~~~~~~~i~~~~~~~ 28 (272)
T cd06300 2 IGLSNSYA--GNTWRAQMLDEFKAQAKEL 28 (272)
T ss_pred eEEecccc--CChHHHHHHHHHHHHHHhh
Confidence 45554322 2445555555665666666
No 264
>PRK05867 short chain dehydrogenase; Provisional
Probab=26.76 E-value=3.3e+02 Score=22.50 Aligned_cols=54 Identities=15% Similarity=0.257 Sum_probs=0.0
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEcCCCcChhHHHHHHHHhcCCcEEEE
Q 039983 12 KRVCVFCGSSPDYKYCYRKAAVDLGNELVSRGLDLVYGGGSVGLMGLISEEVHRGGRHVLGI 73 (220)
Q Consensus 12 ~~I~Vfgss~~~~~~~~~~~A~~lG~~lA~~g~~lVtGGg~~GlM~ava~gA~~~gG~viGv 73 (220)
++|-|.|+++ -..+++++.|++.|+.|+..+....-.+...+...+.++++..+
T Consensus 10 k~vlVtGas~--------gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~ 63 (253)
T PRK05867 10 KRALITGAST--------GIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSGGKVVPV 63 (253)
T ss_pred CEEEEECCCc--------hHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEE
No 265
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=26.73 E-value=3.5e+02 Score=24.28 Aligned_cols=32 Identities=16% Similarity=0.264 Sum_probs=21.0
Q ss_pred CceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCe
Q 039983 11 FKRVCVFCGSSPDYKYCYRKAAVDLGNELVSRGLD 45 (220)
Q Consensus 11 ~~~I~Vfgss~~~~~~~~~~~A~~lG~~lA~~g~~ 45 (220)
|++|+|+.-.. .+...+.+.++.++|.++|+.
T Consensus 1 m~~igiv~n~~---~~~~~~~~~~l~~~L~~~g~~ 32 (305)
T PRK02649 1 MPKAGIIYNDG---KPLAVRTAEELQDKLEAAGWE 32 (305)
T ss_pred CCEEEEEEcCC---CHHHHHHHHHHHHHHHHCCCE
Confidence 45688886543 355667778888877665543
No 266
>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.
Probab=26.69 E-value=50 Score=28.40 Aligned_cols=34 Identities=21% Similarity=0.247 Sum_probs=21.3
Q ss_pred eEEEecCCcccHHHHHHHHHHHHh----ccCCCcEEEE
Q 039983 110 CFIALPGGFGTLEELFEVTTWSQL----GIHNKPVGLI 143 (220)
Q Consensus 110 a~IvlpGG~GTL~El~~~~t~~ql----g~~~kPIill 143 (220)
..|++|||.|++..|..--.+.++ ...+|||..+
T Consensus 98 Dav~iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~VaAI 135 (232)
T cd03148 98 AAVFIPGGHGALIGIPESQDVAAALQWAIKNDRFVITL 135 (232)
T ss_pred eEEEECCCCCChhhcccCHHHHHHHHHHHHcCCEEEEE
Confidence 467899999998755433222222 2357888766
No 267
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=26.68 E-value=2.9e+02 Score=25.01 Aligned_cols=57 Identities=18% Similarity=0.108 Sum_probs=35.6
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCe-EEEcCCCcChhHHHHHHHHhcCCcEEEE
Q 039983 14 VCVFCGSSPDYKYCYRKAAVDLGNELVSRGLD-LVYGGGSVGLMGLISEEVHRGGRHVLGI 73 (220)
Q Consensus 14 I~Vfgss~~~~~~~~~~~A~~lG~~lA~~g~~-lVtGGg~~GlM~ava~gA~~~gG~viGv 73 (220)
=+++|+||...... .+.-++..+.|-+.+.. |++=||. |-|..+.+=+ +.|-.+|||
T Consensus 64 Gt~LgtsR~~~~~~-~~~~~~~~~~l~~~~Id~Li~IGGd-gs~~~a~~L~-e~~i~vigi 121 (317)
T cd00763 64 GTFLGSARFPEFKD-EEGQAKAIEQLKKHGIDALVVIGGD-GSYMGAMRLT-EHGFPCVGL 121 (317)
T ss_pred CeeeccCCCCccCC-HHHHHHHHHHHHHcCCCEEEEECCc-hHHHHHHHHH-HcCCCEEEe
Confidence 56788888532111 12234556667777665 4455666 9998877643 357888888
No 268
>PRK06703 flavodoxin; Provisional
Probab=26.60 E-value=1.2e+02 Score=23.47 Aligned_cols=32 Identities=9% Similarity=-0.001 Sum_probs=19.2
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeE
Q 039983 12 KRVCVFCGSSPDYKYCYRKAAVDLGNELVSRGLDL 46 (220)
Q Consensus 12 ~~I~Vfgss~~~~~~~~~~~A~~lG~~lA~~g~~l 46 (220)
++|.|+.+|..++ -.+.|+.+++.|.+.|+.+
T Consensus 2 mkv~IiY~S~tGn---T~~iA~~ia~~l~~~g~~v 33 (151)
T PRK06703 2 AKILIAYASMSGN---TEDIADLIKVSLDAFDHEV 33 (151)
T ss_pred CeEEEEEECCCch---HHHHHHHHHHHHHhcCCce
Confidence 4555555556553 2346777777776666654
No 269
>PRK09291 short chain dehydrogenase; Provisional
Probab=26.38 E-value=98 Score=25.62 Aligned_cols=32 Identities=16% Similarity=0.232 Sum_probs=22.2
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEcCC
Q 039983 12 KRVCVFCGSSPDYKYCYRKAAVDLGNELVSRGLDLVYGGG 51 (220)
Q Consensus 12 ~~I~Vfgss~~~~~~~~~~~A~~lG~~lA~~g~~lVtGGg 51 (220)
++|.|.|++.. ..+.+.+.|+++|+.++....
T Consensus 3 ~~vlVtGasg~--------iG~~ia~~l~~~G~~v~~~~r 34 (257)
T PRK09291 3 KTILITGAGSG--------FGREVALRLARKGHNVIAGVQ 34 (257)
T ss_pred CEEEEeCCCCH--------HHHHHHHHHHHCCCEEEEEeC
Confidence 46888888762 345667777888888875444
No 270
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=26.33 E-value=4e+02 Score=22.48 Aligned_cols=66 Identities=20% Similarity=0.314 Sum_probs=38.7
Q ss_pred HHHHHhCCeEEEec--CCcccHHHHHHHHHHHHhccCCCcEEEEcCCCCchhHHHHHHHHHHcCCCCccccCcEEEcCCH
Q 039983 102 AEMARNADCFIALP--GGFGTLEELFEVTTWSQLGIHNKPVGLINVEGYYDPILNFIDKSIDEGFIYPSQRSIIVSASNA 179 (220)
Q Consensus 102 ~~~~~~sda~Ivlp--GG~GTL~El~~~~t~~qlg~~~kPIill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~d~ 179 (220)
..+...+|++|.-. .|+|.- ++|++. .++|||..+..++- .+. . +...++..+|+
T Consensus 267 ~~~~~~~d~~l~ps~~e~~~~~--~~Ea~a------~G~pvI~~~~~~~~-e~~------------~--~~~~~~~~~~~ 323 (365)
T cd03809 267 AALYRGARAFVFPSLYEGFGLP--VLEAMA------CGTPVIASNISSLP-EVA------------G--DAALYFDPLDP 323 (365)
T ss_pred HHHHhhhhhhcccchhccCCCC--HHHHhc------CCCcEEecCCCCcc-cee------------c--CceeeeCCCCH
Confidence 44556788665432 223322 566665 58999987654332 111 1 23445666789
Q ss_pred HHHHHHHHhhc
Q 039983 180 KELVQKLEDYV 190 (220)
Q Consensus 180 ee~~~~l~~~~ 190 (220)
+++.+.|.+..
T Consensus 324 ~~~~~~i~~l~ 334 (365)
T cd03809 324 EALAAAIERLL 334 (365)
T ss_pred HHHHHHHHHHh
Confidence 99998888754
No 271
>TIGR00642 mmCoA_mut_beta methylmalonyl-CoA mutase, heterodimeric type, beta chain. The adenosylcobalamin-binding, catalytic chain of methylmalonyl-CoA mutase may form homodimers, as in mitochondrion and E. coli, or heterodimers with a shorter, homologous chain that does not bind adenosylcobalamin. This model describes this non-catalytic beta chain, as found in the enzyme from Propionibacterium freudenreichii, for which the 3-dimensional structure has been solved.
Probab=26.31 E-value=1.2e+02 Score=30.16 Aligned_cols=43 Identities=23% Similarity=0.472 Sum_probs=30.4
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEcCCCcChhHH
Q 039983 12 KRVCVFCGSSPDYKYCYRKAAVDLGNELVSRGLDLVYGGGSVGLMGL 58 (220)
Q Consensus 12 ~~I~Vfgss~~~~~~~~~~~A~~lG~~lA~~g~~lVtGGg~~GlM~a 58 (220)
..|+|.|||. +.|.+.+..+.+.|.+.|...|+=+|..+-|+.
T Consensus 547 a~i~viCssD----~~Y~~~a~~~~~al~~ag~~~v~lAG~p~~~~~ 589 (619)
T TIGR00642 547 AQVAVLCSSD----KVYAQQGLEVAKALKAAGAKALYLAGAFKEFGD 589 (619)
T ss_pred CCEEEEeCCC----cchHHHHHHHHHHHHhCCCCEEEEeCCCcchhh
Confidence 4599999876 478889999999997766654443444365654
No 272
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=26.29 E-value=48 Score=28.49 Aligned_cols=35 Identities=20% Similarity=0.270 Sum_probs=21.3
Q ss_pred eEEEecCCcccHHHHHHHHHHHHh----ccCCCcEEEEc
Q 039983 110 CFIALPGGFGTLEELFEVTTWSQL----GIHNKPVGLIN 144 (220)
Q Consensus 110 a~IvlpGG~GTL~El~~~~t~~ql----g~~~kPIill~ 144 (220)
-.|++|||.|.+..+..--.+.++ ...+|||..+-
T Consensus 96 Dav~iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~iaAIC 134 (231)
T cd03147 96 GIFFVAGGHGTLFDFPHATNLQKIAQQIYANGGVVAAVC 134 (231)
T ss_pred cEEEECCCCchhhhcccCHHHHHHHHHHHHcCCEEEEEC
Confidence 367889999987655432222221 13578998773
No 273
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=26.14 E-value=1.3e+02 Score=25.39 Aligned_cols=38 Identities=24% Similarity=0.236 Sum_probs=24.0
Q ss_pred HHHHhCCeEEEecCCcccHHHHHHHHHHHHhccCCCcEEEEcC
Q 039983 103 EMARNADCFIALPGGFGTLEELFEVTTWSQLGIHNKPVGLINV 145 (220)
Q Consensus 103 ~~~~~sda~IvlpGG~GTL~El~~~~t~~qlg~~~kPIill~~ 145 (220)
++-...|++|+.|.......++...+. ..++||++++.
T Consensus 51 ~~~~~vdgiii~~~~~~~~~~~i~~~~-----~~~iPvV~~~~ 88 (272)
T cd06313 51 MASQGWDFIAVDPLGIGTLTEAVQKAI-----ARGIPVIDMGT 88 (272)
T ss_pred HHHcCCCEEEEcCCChHHhHHHHHHHH-----HCCCcEEEeCC
Confidence 444568999998865554555433332 34689988864
No 274
>cd04246 AAK_AK-DapG-like AAK_AK-DapG-like: Amino Acid Kinase Superfamily (AAK), AK-DapG-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional enzymes found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species, as well as, the catalytic AK domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related isoenzymes. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. The role of the AKI isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulati
Probab=26.07 E-value=1.6e+02 Score=24.94 Aligned_cols=35 Identities=20% Similarity=0.254 Sum_probs=19.6
Q ss_pred EcCCCCCCCHHHHHHHHHHHHHHHHCCCe--EEEcCCC
Q 039983 17 FCGSSPDYKYCYRKAAVDLGNELVSRGLD--LVYGGGS 52 (220)
Q Consensus 17 fgss~~~~~~~~~~~A~~lG~~lA~~g~~--lVtGGg~ 52 (220)
||||...+.+...+.++.+.+. .+.|+. +|.|||.
T Consensus 6 ~GGs~l~~~~~~~~~~~~i~~l-~~~g~~~viV~sg~g 42 (239)
T cd04246 6 FGGTSVADIERIKRVAERIKKA-VKKGYQVVVVVSAMG 42 (239)
T ss_pred ECccccCCHHHHHHHHHHHHHH-HHcCCCEEEEECCCC
Confidence 7888876444455555555443 334443 6677544
No 275
>PRK06924 short chain dehydrogenase; Provisional
Probab=26.05 E-value=1.2e+02 Score=25.13 Aligned_cols=29 Identities=17% Similarity=0.336 Sum_probs=0.0
Q ss_pred CceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEE
Q 039983 11 FKRVCVFCGSSPDYKYCYRKAAVDLGNELVSRGLDLV 47 (220)
Q Consensus 11 ~~~I~Vfgss~~~~~~~~~~~A~~lG~~lA~~g~~lV 47 (220)
|++|.|.|+++ -..+.+++.|+++|+.|+
T Consensus 1 ~k~vlItGasg--------giG~~ia~~l~~~g~~V~ 29 (251)
T PRK06924 1 MRYVIITGTSQ--------GLGEAIANQLLEKGTHVI 29 (251)
T ss_pred CcEEEEecCCc--------hHHHHHHHHHHhcCCEEE
No 276
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=25.96 E-value=1.7e+02 Score=25.35 Aligned_cols=33 Identities=21% Similarity=0.461 Sum_probs=22.0
Q ss_pred CCeEEEecCCcccHHHHHHHHHHHHhccCC-CcEEEEcC
Q 039983 108 ADCFIALPGGFGTLEELFEVTTWSQLGIHN-KPVGLINV 145 (220)
Q Consensus 108 sda~IvlpGG~GTL~El~~~~t~~qlg~~~-kPIill~~ 145 (220)
.| +|+.-||=||+.|+...+.. ... .|+.+++.
T Consensus 58 ~d-~ivv~GGDGTl~~v~~~l~~----~~~~~~lgiiP~ 91 (293)
T TIGR00147 58 VD-TVIAGGGDGTINEVVNALIQ----LDDIPALGILPL 91 (293)
T ss_pred CC-EEEEECCCChHHHHHHHHhc----CCCCCcEEEEcC
Confidence 45 45568999999999877631 123 36777753
No 277
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=25.89 E-value=2.4e+02 Score=25.99 Aligned_cols=29 Identities=28% Similarity=0.345 Sum_probs=16.6
Q ss_pred eEEEcCCCcChhHHHHHHHHhcCCcEEEEeC
Q 039983 45 DLVYGGGSVGLMGLISEEVHRGGRHVLGIIP 75 (220)
Q Consensus 45 ~lVtGGg~~GlM~ava~gA~~~gG~viGv~P 75 (220)
.+|+|+|+.|+ ++++...+.|-.|+++-+
T Consensus 8 v~iiG~g~~G~--~~A~~l~~~G~~V~~~d~ 36 (450)
T PRK14106 8 VLVVGAGVSGL--ALAKFLKKLGAKVILTDE 36 (450)
T ss_pred EEEECCCHHHH--HHHHHHHHCCCEEEEEeC
Confidence 35566666442 555656666666666643
No 278
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=25.83 E-value=2.2e+02 Score=25.50 Aligned_cols=83 Identities=14% Similarity=0.036 Sum_probs=40.4
Q ss_pred CCeEEEcCCCcChhHHHHHHHHhcCCcEEEEeCCcccccccC-CCCCceEeecCCHHHHHHHHHHhCCeEEEecCCcccH
Q 039983 43 GLDLVYGGGSVGLMGLISEEVHRGGRHVLGIIPKALMKKELT-GVTLGEVKPVDHMHQRKAEMARNADCFIALPGGFGTL 121 (220)
Q Consensus 43 g~~lVtGGg~~GlM~ava~gA~~~gG~viGv~P~~~~~~e~~-~~~~~~~~~~~~~~~Rk~~~~~~sda~IvlpGG~GTL 121 (220)
...+|.|+|+.|++ +..-|+..|.+++.+........+.. .-..+.++...+- .+-..+....|.+|=.-|+..|+
T Consensus 185 ~~VlV~G~G~vG~~--avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~-~~~~~~~~~~D~vid~~g~~~~~ 261 (360)
T PLN02586 185 KHLGVAGLGGLGHV--AVKIGKAFGLKVTVISSSSNKEDEAINRLGADSFLVSTDP-EKMKAAIGTMDYIIDTVSAVHAL 261 (360)
T ss_pred CEEEEECCCHHHHH--HHHHHHHCCCEEEEEeCCcchhhhHHHhCCCcEEEcCCCH-HHHHhhcCCCCEEEECCCCHHHH
Confidence 35577777766666 45667778888887643321101110 0111222222221 11111112357777777766677
Q ss_pred HHHHHHH
Q 039983 122 EELFEVT 128 (220)
Q Consensus 122 ~El~~~~ 128 (220)
++.+..+
T Consensus 262 ~~~~~~l 268 (360)
T PLN02586 262 GPLLGLL 268 (360)
T ss_pred HHHHHHh
Confidence 7665544
No 279
>PLN02271 serine hydroxymethyltransferase
Probab=25.81 E-value=83 Score=31.14 Aligned_cols=41 Identities=34% Similarity=0.391 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHCCCeEEEcCC----------CcChhHHHHHHHHhcCCcEE
Q 039983 31 AAVDLGNELVSRGLDLVYGGG----------SVGLMGLISEEVHRGGRHVL 71 (220)
Q Consensus 31 ~A~~lG~~lA~~g~~lVtGGg----------~~GlM~ava~gA~~~gG~vi 71 (220)
-|+.|++.|.++|+.||+||= +.|+.+..+.-+++.-+.++
T Consensus 443 NAkaLA~~L~~~G~~vv~ggTdnHlvLvDl~~~g~~G~~ae~~Le~~~I~~ 493 (586)
T PLN02271 443 NAQALASALLRRKCRLVTGGTDNHLLLWDLTTLGLTGKNYEKVCEMCHITL 493 (586)
T ss_pred HHHHHHHHHHHCCCeEeeCCCCcceeeecCcccCCCHHHHHHHHHHcCeEe
Confidence 467788889999999999773 23666777776766544433
No 280
>PF09353 DUF1995: Domain of unknown function (DUF1995); InterPro: IPR018962 This family of proteins are functionally uncharacterised.
Probab=25.77 E-value=3.9e+02 Score=22.20 Aligned_cols=38 Identities=16% Similarity=0.250 Sum_probs=22.5
Q ss_pred CCeEEEecCCcccHHHHHHHHHHHHhccCCCcEEEEcCCCCchh
Q 039983 108 ADCFIALPGGFGTLEELFEVTTWSQLGIHNKPVGLINVEGYYDP 151 (220)
Q Consensus 108 sda~IvlpGG~GTL~El~~~~t~~qlg~~~kPIill~~~g~~~~ 151 (220)
.|++|++-=..-+++++-.+... ...+|||++|+ -|+.
T Consensus 98 ~~~~vvv~p~~~~l~~~e~~~~~----~~~rpvvl~Np--~l~~ 135 (209)
T PF09353_consen 98 DDILVVVAPSPQELDDVEKLCEA----AGGRPVVLLNP--QLED 135 (209)
T ss_pred CCEEEEEECChhhHHHHHHHHHh----cCCCeEEEEec--cccc
Confidence 47666664444447666544432 12389999995 4654
No 281
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=25.75 E-value=3.6e+02 Score=24.54 Aligned_cols=90 Identities=14% Similarity=0.052 Sum_probs=50.6
Q ss_pred CCHHHHHHHHHH--hCCeEEEecCCcccHHHHHHHHHHHHhccCCCcEEEEcCCCCchhHHHHHHHHHHcCCCC------
Q 039983 95 DHMHQRKAEMAR--NADCFIALPGGFGTLEELFEVTTWSQLGIHNKPVGLINVEGYYDPILNFIDKSIDEGFIY------ 166 (220)
Q Consensus 95 ~~~~~Rk~~~~~--~sda~IvlpGG~GTL~El~~~~t~~qlg~~~kPIill~~~g~~~~l~~~l~~~~~~g~i~------ 166 (220)
.+|.+=-..|.+ ..++++++.=+.|+.+|-...|- .....+|||+.+-. |-+.+.-. +|-..|-|-
T Consensus 210 ~~~~D~L~~~~~Dp~T~~Ivl~~E~gG~~e~~aa~fi--~~~~~~KPVVa~~a-Grsap~G~---r~gHaGAi~~~~~G~ 283 (317)
T PTZ00187 210 TNFIDCLKLFLNDPETEGIILIGEIGGTAEEEAAEWI--KNNPIKKPVVSFIA-GITAPPGR---RMGHAGAIISGGKGT 283 (317)
T ss_pred CCHHHHHHHHhhCCCccEEEEEEecCCchhHHHHHHH--HhhcCCCcEEEEEe-cCCCCCCC---cccchhhhhccCCCC
Confidence 455555555554 45578887777788865443332 22234799999954 44432111 111111111
Q ss_pred cc------ccCcEEEcCCHHHHHHHHHhhc
Q 039983 167 PS------QRSIIVSASNAKELVQKLEDYV 190 (220)
Q Consensus 167 ~~------~~~~i~~~~d~ee~~~~l~~~~ 190 (220)
.+ ...-+++++|++|+.+.+++..
T Consensus 284 ~~~k~aal~qaGv~v~~~~~el~~~~~~~~ 313 (317)
T PTZ00187 284 APGKIEALEAAGVRVVKSPAQLGKTMLEVM 313 (317)
T ss_pred HHHHHHHHHHCCCeEeCCHHHHHHHHHHHH
Confidence 00 1235788999999999998754
No 282
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=25.69 E-value=3.3e+02 Score=22.81 Aligned_cols=69 Identities=19% Similarity=0.253 Sum_probs=41.7
Q ss_pred HHHHHHHhCCeEEEec--CCcccHHHHHHHHHHHHhccCCCcEEEEcCCCCchhHHHHHHHHHHcCCCCccccCcEEEcC
Q 039983 100 RKAEMARNADCFIALP--GGFGTLEELFEVTTWSQLGIHNKPVGLINVEGYYDPILNFIDKSIDEGFIYPSQRSIIVSAS 177 (220)
Q Consensus 100 Rk~~~~~~sda~Ivlp--GG~GTL~El~~~~t~~qlg~~~kPIill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~ 177 (220)
....++..||++|.-. .|+|+- +.|++. .++|||.-+..+ +..++ .. ...+++.+
T Consensus 274 ~~~~~~~~adv~v~ps~~e~~~~~--~~Eama------~G~PvI~~~~~~-~~~~~---~~-----------~~~~~~~~ 330 (375)
T cd03821 274 DKAAALADADLFVLPSHSENFGIV--VAEALA------CGTPVVTTDKVP-WQELI---EY-----------GCGWVVDD 330 (375)
T ss_pred HHHHHHhhCCEEEeccccCCCCcH--HHHHHh------cCCCEEEcCCCC-HHHHh---hc-----------CceEEeCC
Confidence 3344567799887653 556654 677776 589999877543 22221 11 12344556
Q ss_pred CHHHHHHHHHhhcC
Q 039983 178 NAKELVQKLEDYVP 191 (220)
Q Consensus 178 d~ee~~~~l~~~~~ 191 (220)
+++++.+.|.+...
T Consensus 331 ~~~~~~~~i~~l~~ 344 (375)
T cd03821 331 DVDALAAALRRALE 344 (375)
T ss_pred ChHHHHHHHHHHHh
Confidence 66888777776643
No 283
>PRK09004 FMN-binding protein MioC; Provisional
Probab=25.47 E-value=1.9e+02 Score=22.69 Aligned_cols=22 Identities=18% Similarity=0.188 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHCCCeEE
Q 039983 26 YCYRKAAVDLGNELVSRGLDLV 47 (220)
Q Consensus 26 ~~~~~~A~~lG~~lA~~g~~lV 47 (220)
+.|...++.+-+.|.+.|...|
T Consensus 96 ~~fc~~~~~ld~~l~~lGa~~v 117 (146)
T PRK09004 96 DTFCGAIDKLEQLLKAKGAKQI 117 (146)
T ss_pred HHHhHHHHHHHHHHHHcCCeEe
Confidence 3444444444444444444443
No 284
>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=25.42 E-value=66 Score=30.34 Aligned_cols=41 Identities=32% Similarity=0.417 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHCCCeEEEcCCC----------cChhHHHHHHHHhcCCcE
Q 039983 30 KAAVDLGNELVSRGLDLVYGGGS----------VGLMGLISEEVHRGGRHV 70 (220)
Q Consensus 30 ~~A~~lG~~lA~~g~~lVtGGg~----------~GlM~ava~gA~~~gG~v 70 (220)
+-|+.|++.|.++|+.||+||=. .|+-+..+..+++.-+.+
T Consensus 291 ~NAkaLAe~l~~~G~~vvsGgTdnHl~lVDl~~~~~~Gk~ae~~L~~~~It 341 (413)
T COG0112 291 KNAKALAEALKERGFKVVSGGTDNHLVLVDLRSKGLTGKKAEAALERAGIT 341 (413)
T ss_pred HHHHHHHHHHHHcCCeEecCCccceEEEEEcccCCCCHHHHHHHHHHcCEe
Confidence 45778888899999999997632 266677777777654443
No 285
>PRK10494 hypothetical protein; Provisional
Probab=25.30 E-value=1.6e+02 Score=25.75 Aligned_cols=12 Identities=33% Similarity=0.833 Sum_probs=7.7
Q ss_pred hCCeEEEecCCc
Q 039983 107 NADCFIALPGGF 118 (220)
Q Consensus 107 ~sda~IvlpGG~ 118 (220)
.+|++|||+||.
T Consensus 78 ~~d~IVVLGgG~ 89 (259)
T PRK10494 78 KVDYIVVLGGGY 89 (259)
T ss_pred CCCEEEEcCCCc
Confidence 366777777664
No 286
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=25.30 E-value=1e+02 Score=25.32 Aligned_cols=29 Identities=17% Similarity=0.289 Sum_probs=14.9
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEE
Q 039983 12 KRVCVFCGSSPDYKYCYRKAAVDLGNELVSRGLDLVY 48 (220)
Q Consensus 12 ~~I~Vfgss~~~~~~~~~~~A~~lG~~lA~~g~~lVt 48 (220)
+++.|.|+++. ....+++.++++|+.++.
T Consensus 6 ~~~lItG~~g~--------iG~~~a~~l~~~G~~vi~ 34 (253)
T PRK08217 6 KVIVITGGAQG--------LGRAMAEYLAQKGAKLAL 34 (253)
T ss_pred CEEEEECCCch--------HHHHHHHHHHHCCCEEEE
Confidence 35666665442 234455555556665543
No 287
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=25.24 E-value=3e+02 Score=20.75 Aligned_cols=91 Identities=16% Similarity=0.072 Sum_probs=47.8
Q ss_pred HHHHHHHHHHCCCeEEEcCCCcChhHHHHHHHHh---cCC-cEEEEeCCcccccccCCCCCceEeecCCHHHHHHHHHHh
Q 039983 32 AVDLGNELVSRGLDLVYGGGSVGLMGLISEEVHR---GGR-HVLGIIPKALMKKELTGVTLGEVKPVDHMHQRKAEMARN 107 (220)
Q Consensus 32 A~~lG~~lA~~g~~lVtGGg~~GlM~ava~gA~~---~gG-~viGv~P~~~~~~e~~~~~~~~~~~~~~~~~Rk~~~~~~ 107 (220)
.+++++.+.+.....++|-|+ ....+..+++. .++ .+.++.. .|..| . ...++..
T Consensus 3 ~~~~a~~~~~~~~i~~~G~G~--s~~~a~e~~~kl~e~~~i~~~~~~~-----~e~~h-------------g-~~~~~~~ 61 (153)
T cd05009 3 IKELAEKLKEAKSFYVLGRGP--NYGTALEGALKLKETSYIHAEAYSA-----GEFKH-------------G-PIALVDE 61 (153)
T ss_pred HHHHHHHHhccCcEEEEcCCC--CHHHHHHHHHHHHHHHhhcceeccH-----HHhcc-------------C-hhhhccC
Confidence 456677787778888887764 34444444443 332 3333211 11111 1 2234455
Q ss_pred CCeEEEecCCcccHHHHHHHHHHHHhccCCCcEEEEcC
Q 039983 108 ADCFIALPGGFGTLEELFEVTTWSQLGIHNKPVGLINV 145 (220)
Q Consensus 108 sda~IvlpGG~GTL~El~~~~t~~qlg~~~kPIill~~ 145 (220)
.|.+|++-++-.|-+++..++.. +...+.|++++..
T Consensus 62 ~~~vi~is~~g~t~~~~~~~~~~--~~~~~~~vi~it~ 97 (153)
T cd05009 62 GTPVIFLAPEDRLEEKLESLIKE--VKARGAKVIVITD 97 (153)
T ss_pred CCcEEEEecCChhHHHHHHHHHH--HHHcCCEEEEEec
Confidence 66666666544666666555533 2234578887753
No 288
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=25.12 E-value=2.8e+02 Score=24.21 Aligned_cols=17 Identities=12% Similarity=0.085 Sum_probs=13.2
Q ss_pred EEcCCHHHHHHHHHhhc
Q 039983 174 VSASNAKELVQKLEDYV 190 (220)
Q Consensus 174 ~~~~d~ee~~~~l~~~~ 190 (220)
..++|++|+++++++..
T Consensus 239 ~~~~~~~el~~~l~~~~ 255 (256)
T TIGR00715 239 AIFDDISQLNQFVARLL 255 (256)
T ss_pred ccCCCHHHHHHHHHHhc
Confidence 45689999999988753
No 289
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=25.09 E-value=2.8e+02 Score=24.14 Aligned_cols=54 Identities=19% Similarity=0.234 Sum_probs=32.8
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCe----------------EEEcCCCcChhHHHHHHHHhcCCcEEEEeC
Q 039983 12 KRVCVFCGSSPDYKYCYRKAAVDLGNELVSRGLD----------------LVYGGGSVGLMGLISEEVHRGGRHVLGIIP 75 (220)
Q Consensus 12 ~~I~Vfgss~~~~~~~~~~~A~~lG~~lA~~g~~----------------lVtGGg~~GlM~ava~gA~~~gG~viGv~P 75 (220)
|+++|| .+ +.-.+.+.++.+.|.+.|+. +|+=||- |.|--+++-. +-.++||-.
T Consensus 1 m~~~~~--~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vi~iGGD-GT~L~a~~~~---~~Pilgin~ 70 (256)
T PRK14075 1 MKLGIF--YR----EEKEKEAKFLKEKISKEHEVVEFCEASASGKVTADLIIVVGGD-GTVLKAAKKV---GTPLVGFKA 70 (256)
T ss_pred CEEEEE--eC----ccHHHHHHHHHHHHHHcCCeeEeecccccccCCCCEEEEECCc-HHHHHHHHHc---CCCEEEEeC
Confidence 457777 22 22346677888888776642 4444555 7775555544 777888843
No 290
>PRK08339 short chain dehydrogenase; Provisional
Probab=25.06 E-value=1.1e+02 Score=25.91 Aligned_cols=29 Identities=17% Similarity=0.216 Sum_probs=15.4
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEE
Q 039983 12 KRVCVFCGSSPDYKYCYRKAAVDLGNELVSRGLDLVY 48 (220)
Q Consensus 12 ~~I~Vfgss~~~~~~~~~~~A~~lG~~lA~~g~~lVt 48 (220)
+.+-|.|+++- ..+++++.|++.|+.|+.
T Consensus 9 k~~lItGas~g--------IG~aia~~l~~~G~~V~~ 37 (263)
T PRK08339 9 KLAFTTASSKG--------IGFGVARVLARAGADVIL 37 (263)
T ss_pred CEEEEeCCCCc--------HHHHHHHHHHHCCCEEEE
Confidence 34555565541 234555556666666554
No 291
>cd01400 6PGL 6PGL: 6-Phosphogluconolactonase (6PGL) subfamily; 6PGL catalyzes the second step of the oxidative phase of the pentose phosphate pathway, the hydrolyzation of 6-phosphoglucono-1,5-lactone (delta form) to 6-phosphogluconate. 6PGL is thought to guard against the accumulation of the delta form of the lactone, which may be toxic through its reaction with endogenous cellular nucleophiles.
Probab=24.99 E-value=3.4e+02 Score=22.77 Aligned_cols=44 Identities=20% Similarity=0.261 Sum_probs=28.9
Q ss_pred HHHhCCeEEEecCCcccHHHHHHHHHHHHhccCCCcEEEEcCCCCc
Q 039983 104 MARNADCFIALPGGFGTLEELFEVTTWSQLGIHNKPVGLINVEGYY 149 (220)
Q Consensus 104 ~~~~sda~IvlpGG~GTL~El~~~~t~~qlg~~~kPIill~~~g~~ 149 (220)
+.+...+.|+|+||. |...+++.+.-.. ...-+.|.++..+.+|
T Consensus 19 i~~~~~~~l~lsGGs-tp~~~y~~L~~~~-~i~w~~v~~f~~DEr~ 62 (219)
T cd01400 19 IAKRGRFSLALSGGS-TPKPLYELLAAAP-ALDWSKVHVFLGDERC 62 (219)
T ss_pred HHhcCeEEEEECCCc-cHHHHHHHhcccc-CCCCceEEEEEeeccc
Confidence 344678999999986 5558888876443 1223566666666666
No 292
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=24.99 E-value=1.6e+02 Score=26.50 Aligned_cols=53 Identities=23% Similarity=0.293 Sum_probs=33.7
Q ss_pred HhCCeEEEecCCcccHHHHHHHHHHHHhccCCCcEEEEcC--CCCc-----hhHHHHHHHHHHcCC
Q 039983 106 RNADCFIALPGGFGTLEELFEVTTWSQLGIHNKPVGLINV--EGYY-----DPILNFIDKSIDEGF 164 (220)
Q Consensus 106 ~~sda~IvlpGG~GTL~El~~~~t~~qlg~~~kPIill~~--~g~~-----~~l~~~l~~~~~~g~ 164 (220)
+.+|.+|++ ||=||+-..+..+ ...++||+=+|. -||. +.+.+.|+.+.+..|
T Consensus 67 ~~~Dlvi~i-GGDGTlL~aar~~-----~~~~iPilGIN~G~lGFLt~~~~~~~~~~l~~l~~g~y 126 (305)
T PRK02649 67 SSMKFAIVL-GGDGTVLSAARQL-----APCGIPLLTINTGHLGFLTEAYLNQLDEAIDQVLAGQY 126 (305)
T ss_pred cCcCEEEEE-eCcHHHHHHHHHh-----cCCCCcEEEEeCCCCcccccCCHHHHHHHHHHHHcCCc
Confidence 346766655 7789986554433 235789988875 3566 456666666665544
No 293
>PRK12367 short chain dehydrogenase; Provisional
Probab=24.93 E-value=1e+02 Score=26.13 Aligned_cols=28 Identities=18% Similarity=0.315 Sum_probs=14.6
Q ss_pred eEEEcCCCcChhHHHHHHHHhcCCcEEEE
Q 039983 45 DLVYGGGSVGLMGLISEEVHRGGRHVLGI 73 (220)
Q Consensus 45 ~lVtGGg~~GlM~ava~gA~~~gG~viGv 73 (220)
.|||||+. |+=.+.++...+.|..|+.+
T Consensus 17 ~lITGas~-gIG~ala~~l~~~G~~Vi~~ 44 (245)
T PRK12367 17 IGITGASG-ALGKALTKAFRAKGAKVIGL 44 (245)
T ss_pred EEEEcCCc-HHHHHHHHHHHHCCCEEEEE
Confidence 35555554 55555555555555555444
No 294
>cd01411 SIR2H SIR2H: Uncharacterized prokaryotic Sir2 homologs from several gram positive bacterial species and Fusobacteria; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=24.84 E-value=93 Score=26.49 Aligned_cols=45 Identities=16% Similarity=0.127 Sum_probs=28.0
Q ss_pred HHHHHHHHHhCCeEEEecCCcccHHHHHHHHHHHHhccCCCcEEEEcCC
Q 039983 98 HQRKAEMARNADCFIALPGGFGTLEELFEVTTWSQLGIHNKPVGLINVE 146 (220)
Q Consensus 98 ~~Rk~~~~~~sda~IvlpGG~GTL~El~~~~t~~qlg~~~kPIill~~~ 146 (220)
.++....++.+|.+|+ +||--.+.-++.+.+...++.|++++|.+
T Consensus 162 ~~~~~~~~~~~Dlllv----iGTSl~v~p~~~l~~~~~~~~~~i~iN~~ 206 (225)
T cd01411 162 IEEAIQAIEKADLLVI----VGTSFVVYPFAGLIDYRQAGANLIAINKE 206 (225)
T ss_pred HHHHHHHHhcCCEEEE----ECcCCeehhHHHHHHHHhCCCeEEEECCC
Confidence 4566667788997777 33533444444443333357899999974
No 295
>PRK12367 short chain dehydrogenase; Provisional
Probab=24.71 E-value=1.4e+02 Score=25.35 Aligned_cols=40 Identities=13% Similarity=0.086 Sum_probs=27.9
Q ss_pred hhhhcCCCceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEcCC
Q 039983 4 KKEAKSRFKRVCVFCGSSPDYKYCYRKAAVDLGNELVSRGLDLVYGGG 51 (220)
Q Consensus 4 ~~~~~~~~~~I~Vfgss~~~~~~~~~~~A~~lG~~lA~~g~~lVtGGg 51 (220)
|.|.+-+.+++-|.|+|+- ..+.+++.++++|+.++.-+.
T Consensus 7 ~~~~~l~~k~~lITGas~g--------IG~ala~~l~~~G~~Vi~~~r 46 (245)
T PRK12367 7 MAQSTWQGKRIGITGASGA--------LGKALTKAFRAKGAKVIGLTH 46 (245)
T ss_pred hhHHhhCCCEEEEEcCCcH--------HHHHHHHHHHHCCCEEEEEEC
Confidence 4455555678889998772 346777778889999875443
No 296
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=24.62 E-value=3.5e+02 Score=21.32 Aligned_cols=103 Identities=17% Similarity=0.151 Sum_probs=52.6
Q ss_pred CCCceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEcCCCcChhHHHHHHHHhcCCcEEEE-eCCcccccccCCCC
Q 039983 9 SRFKRVCVFCGSSPDYKYCYRKAAVDLGNELVSRGLDLVYGGGSVGLMGLISEEVHRGGRHVLGI-IPKALMKKELTGVT 87 (220)
Q Consensus 9 ~~~~~I~Vfgss~~~~~~~~~~~A~~lG~~lA~~g~~lVtGGg~~GlM~ava~gA~~~gG~viGv-~P~~~~~~e~~~~~ 87 (220)
-+-++|+|+|-|.. ..+.|+..|.++|.++..---.+- -+...+.++.--+..+ .| .+...++-.+.
T Consensus 26 ~~gk~v~VvGrs~~--------vG~pla~lL~~~gatV~~~~~~t~---~l~~~v~~ADIVvsAtg~~-~~i~~~~ikpG 93 (140)
T cd05212 26 LDGKKVLVVGRSGI--------VGAPLQCLLQRDGATVYSCDWKTI---QLQSKVHDADVVVVGSPKP-EKVPTEWIKPG 93 (140)
T ss_pred CCCCEEEEECCCch--------HHHHHHHHHHHCCCEEEEeCCCCc---CHHHHHhhCCEEEEecCCC-CccCHHHcCCC
Confidence 34578999997663 456777888888888865443211 1112223333222222 12 11222222221
Q ss_pred CceEee-c-CCHHHHHHHHHHhCCeEEEecCCcccHHHHHH
Q 039983 88 LGEVKP-V-DHMHQRKAEMARNADCFIALPGGFGTLEELFE 126 (220)
Q Consensus 88 ~~~~~~-~-~~~~~Rk~~~~~~sda~IvlpGG~GTL~El~~ 126 (220)
. +++ + .++ +.-....+.+.++.=.|||+|-+.=...
T Consensus 94 a--~Vidvg~~~-~~~~~~~~~a~~~tPvpgGVGp~T~a~L 131 (140)
T cd05212 94 A--TVINCSPTK-LSGDDVKESASLYVPMTGGVGKLTVAMR 131 (140)
T ss_pred C--EEEEcCCCc-ccchhhHhhceEEcCCCCCchHHHHHHH
Confidence 1 111 1 111 1123455668889999999998764433
No 297
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=24.45 E-value=1e+02 Score=26.94 Aligned_cols=38 Identities=21% Similarity=0.133 Sum_probs=24.9
Q ss_pred EEEEc-CCCCCCCHHHHHHHHHHHHHHHHCCCeEEEcCCC
Q 039983 14 VCVFC-GSSPDYKYCYRKAAVDLGNELVSRGLDLVYGGGS 52 (220)
Q Consensus 14 I~Vfg-ss~~~~~~~~~~~A~~lG~~lA~~g~~lVtGGg~ 52 (220)
|+|++ |.+.. .+.-...++.+-+.|.+.||.++.-...
T Consensus 2 ~~~~~gg~s~e-~~~s~~s~~~i~~al~~~g~~v~~i~~~ 40 (315)
T TIGR01205 2 VAVLFGGKSAE-HEISLVSAAAVLKALRDLGYDVYPVDID 40 (315)
T ss_pred EEEEeCCCCCC-eeeeHHHHHHHHHHHhhcCCEEEEEeec
Confidence 55555 44443 3332467899999999999997654333
No 298
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=24.44 E-value=3.1e+02 Score=24.03 Aligned_cols=67 Identities=16% Similarity=0.222 Sum_probs=40.8
Q ss_pred HHHHHhCCeEEEec--CCcccHHHHHHHHHHHHhccCCCcEEEEcCCCCchhHHHHHHHHHHcCCCCccccCcEEEcCCH
Q 039983 102 AEMARNADCFIALP--GGFGTLEELFEVTTWSQLGIHNKPVGLINVEGYYDPILNFIDKSIDEGFIYPSQRSIIVSASNA 179 (220)
Q Consensus 102 ~~~~~~sda~Ivlp--GG~GTL~El~~~~t~~qlg~~~kPIill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~d~ 179 (220)
..+...||++|..+ -|+|.. +.|+++ .++|||..+..|. ..++ .+ . ...+.+..|+
T Consensus 294 ~~~l~~ad~~l~~s~~E~~g~~--~lEAma------~G~PvI~s~~~~~-~e~i-------~~-----~-~~g~~~~~~~ 351 (392)
T cd03805 294 ELLLSSARALLYTPSNEHFGIV--PLEAMY------AGKPVIACNSGGP-LETV-------VD-----G-ETGFLCEPTP 351 (392)
T ss_pred HHHHhhCeEEEECCCcCCCCch--HHHHHH------cCCCEEEECCCCc-HHHh-------cc-----C-CceEEeCCCH
Confidence 45678899988653 344543 467775 5899999876442 2221 11 1 1234445688
Q ss_pred HHHHHHHHhhc
Q 039983 180 KELVQKLEDYV 190 (220)
Q Consensus 180 ee~~~~l~~~~ 190 (220)
+++.+.|.+..
T Consensus 352 ~~~a~~i~~l~ 362 (392)
T cd03805 352 EEFAEAMLKLA 362 (392)
T ss_pred HHHHHHHHHHH
Confidence 88888887654
No 299
>PRK00071 nadD nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=24.42 E-value=1.2e+02 Score=25.13 Aligned_cols=27 Identities=22% Similarity=0.278 Sum_probs=19.4
Q ss_pred CceEEEEcCCCCCCCHHHHHHHHHHHH
Q 039983 11 FKRVCVFCGSSPDYKYCYRKAAVDLGN 37 (220)
Q Consensus 11 ~~~I~Vfgss~~~~~~~~~~~A~~lG~ 37 (220)
+++|+|||||=.+.+--+...++++-+
T Consensus 3 ~~~i~i~gGsFdP~H~GH~~l~~~a~~ 29 (203)
T PRK00071 3 MKRIGLFGGTFDPPHYGHLAIAEEAAE 29 (203)
T ss_pred CcEEEEEeeCCCccCHHHHHHHHHHHH
Confidence 457999999987777666655655443
No 300
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=24.36 E-value=1.3e+02 Score=25.74 Aligned_cols=21 Identities=24% Similarity=0.506 Sum_probs=16.5
Q ss_pred HHHHHHHHHHCCCeEEEcCCC
Q 039983 32 AVDLGNELVSRGLDLVYGGGS 52 (220)
Q Consensus 32 A~~lG~~lA~~g~~lVtGGg~ 52 (220)
-+++++.+...|..+|.|+.+
T Consensus 205 q~~~a~~lidaGaDiIiG~Hp 225 (250)
T PF09587_consen 205 QRELARALIDAGADIIIGHHP 225 (250)
T ss_pred HHHHHHHHHHcCCCEEEeCCC
Confidence 366778888888888888877
No 301
>COG1582 FlgEa Uncharacterized protein, possibly involved in motility [Cell motility and secretion]
Probab=24.30 E-value=58 Score=22.79 Aligned_cols=24 Identities=17% Similarity=0.302 Sum_probs=20.4
Q ss_pred ccCcEEEcCCHHHHHHHHHhhcCC
Q 039983 169 QRSIIVSASNAKELVQKLEDYVPS 192 (220)
Q Consensus 169 ~~~~i~~~~d~ee~~~~l~~~~~~ 192 (220)
....+++-++.||+++.+.+|++.
T Consensus 34 nGkkyvVkEsveEVi~kI~~y~rk 57 (67)
T COG1582 34 NGKKYVVKESVEEVINKIIEYRRK 57 (67)
T ss_pred cCcEEEEcccHHHHHHHHHHHHHH
Confidence 346789999999999999999754
No 302
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=24.29 E-value=3.5e+02 Score=21.15 Aligned_cols=41 Identities=10% Similarity=0.050 Sum_probs=32.9
Q ss_pred HHHHHHHHHCCCeEEEcCCCcChhHHHHHHHHhcCCcEEEEe
Q 039983 33 VDLGNELVSRGLDLVYGGGSVGLMGLISEEVHRGGRHVLGII 74 (220)
Q Consensus 33 ~~lG~~lA~~g~~lVtGGg~~GlM~ava~gA~~~gG~viGv~ 74 (220)
.-+...|..+||.++|-|-. =-.+.+.+.|.+.+-.+|++.
T Consensus 21 ~iv~~~lr~~G~eVi~LG~~-vp~e~i~~~a~~~~~d~V~lS 61 (137)
T PRK02261 21 KILDRALTEAGFEVINLGVM-TSQEEFIDAAIETDADAILVS 61 (137)
T ss_pred HHHHHHHHHCCCEEEECCCC-CCHHHHHHHHHHcCCCEEEEc
Confidence 45556677889999998866 456888888999999999994
No 303
>PRK13054 lipid kinase; Reviewed
Probab=24.24 E-value=2.1e+02 Score=25.14 Aligned_cols=35 Identities=17% Similarity=0.211 Sum_probs=23.3
Q ss_pred CCeEEEecCCcccHHHHHHHHHHHHhccCCCcEEEEc
Q 039983 108 ADCFIALPGGFGTLEELFEVTTWSQLGIHNKPVGLIN 144 (220)
Q Consensus 108 sda~IvlpGG~GTL~El~~~~t~~qlg~~~kPIill~ 144 (220)
.| .|+.-||=||++|+...+..... .+..|+.++-
T Consensus 57 ~d-~vvv~GGDGTl~evv~~l~~~~~-~~~~~lgiiP 91 (300)
T PRK13054 57 VA-TVIAGGGDGTINEVATALAQLEG-DARPALGILP 91 (300)
T ss_pred CC-EEEEECCccHHHHHHHHHHhhcc-CCCCcEEEEe
Confidence 45 56688999999999877732111 1245788874
No 304
>PRK00481 NAD-dependent deacetylase; Provisional
Probab=24.11 E-value=2.3e+02 Score=24.18 Aligned_cols=70 Identities=20% Similarity=0.119 Sum_probs=41.6
Q ss_pred HHHHHHHHHhCCeEEEecCCcccHHHHHHHHHHHHh-ccCCCcEEEEcCCCCchhHHHHHHHHHHcCCCCccccCcEEEc
Q 039983 98 HQRKAEMARNADCFIALPGGFGTLEELFEVTTWSQL-GIHNKPVGLINVEGYYDPILNFIDKSIDEGFIYPSQRSIIVSA 176 (220)
Q Consensus 98 ~~Rk~~~~~~sda~IvlpGG~GTL~El~~~~t~~ql-g~~~kPIill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~ 176 (220)
..+....++.+|.+|+++ -..+. .-++.+... ...+.|++++|.+... ++ ....+.+.
T Consensus 168 ~~~a~~~~~~~dl~lviG-Tsl~V---~p~~~l~~~~~~~~~~~i~iN~~~~~---------------~~--~~~~~~i~ 226 (242)
T PRK00481 168 IDEAYEALEEADLFIVIG-TSLVV---YPAAGLPYEAREHGAKTVEINLEPTP---------------LD--SLFDLVIH 226 (242)
T ss_pred HHHHHHHHhcCCEEEEEC-CCceE---cCHhHHHHHHHHCCCeEEEECCCCCC---------------CC--CccCEEEE
Confidence 345556667889998865 33332 222222221 2357899999975321 11 11347778
Q ss_pred CCHHHHHHHHHh
Q 039983 177 SNAKELVQKLED 188 (220)
Q Consensus 177 ~d~ee~~~~l~~ 188 (220)
.+.++++..|.+
T Consensus 227 ~~~~~~l~~l~~ 238 (242)
T PRK00481 227 GKAGEVVPELVE 238 (242)
T ss_pred CCHHHHHHHHHH
Confidence 899999988754
No 305
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=23.96 E-value=1.4e+02 Score=24.82 Aligned_cols=63 Identities=24% Similarity=0.473 Sum_probs=39.0
Q ss_pred EEecCCcccHHHHHHHHHHHHhc-cCCCcEEEEcCCCCchhHHHHH-HHHHHcCCCCccccC-cEEEc-CCHHHHHHHHH
Q 039983 112 IALPGGFGTLEELFEVTTWSQLG-IHNKPVGLINVEGYYDPILNFI-DKSIDEGFIYPSQRS-IIVSA-SNAKELVQKLE 187 (220)
Q Consensus 112 IvlpGG~GTL~El~~~~t~~qlg-~~~kPIill~~~g~~~~l~~~l-~~~~~~g~i~~~~~~-~i~~~-~d~ee~~~~l~ 187 (220)
|||-||.|| .+..+. ..+||.+-+... + ++++++ +.+...|+ .+ .+++. ...+.+.+++.
T Consensus 3 vIla~G~Gt--------Rl~plt~~~pK~ll~i~g~--~-pli~~~l~~l~~~g~-----~~ii~V~~~~~~~~i~~~~~ 66 (248)
T PF00483_consen 3 VILAGGKGT--------RLRPLTDTIPKPLLPIGGK--Y-PLIDYVLENLANAGI-----KEIIVVVNGYKEEQIEEHLG 66 (248)
T ss_dssp EEEEESCCG--------GGTTTTTTSSGGGSEETTE--E-EHHHHHHHHHHHTTC-----SEEEEEEETTTHHHHHHHHT
T ss_pred EEECCCCCc--------cCchhhhccccccceecCC--C-cchhhhhhhhcccCC-----ceEEEEEeeccccccccccc
Confidence 778999999 333332 357888877532 2 666654 67777665 34 34444 56667777777
Q ss_pred hhc
Q 039983 188 DYV 190 (220)
Q Consensus 188 ~~~ 190 (220)
+..
T Consensus 67 ~~~ 69 (248)
T PF00483_consen 67 SGY 69 (248)
T ss_dssp TSG
T ss_pred ccc
Confidence 653
No 306
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=23.91 E-value=4e+02 Score=23.51 Aligned_cols=27 Identities=26% Similarity=0.369 Sum_probs=16.3
Q ss_pred EEEcCCCcChhHHHHHHHHhcCCcEEEEe
Q 039983 46 LVYGGGSVGLMGLISEEVHRGGRHVLGII 74 (220)
Q Consensus 46 lVtGGg~~GlM~ava~gA~~~gG~viGv~ 74 (220)
+|.-||- |.|-.+++ ....+-.++||-
T Consensus 61 vi~iGGD-GTlL~a~~-~~~~~~pi~gIn 87 (277)
T PRK03708 61 IIAIGGD-GTILRIEH-KTKKDIPILGIN 87 (277)
T ss_pred EEEEeCc-HHHHHHHH-hcCCCCeEEEEe
Confidence 3344555 87776666 555555666663
No 307
>PRK12314 gamma-glutamyl kinase; Provisional
Probab=23.87 E-value=1.3e+02 Score=26.25 Aligned_cols=44 Identities=23% Similarity=0.278 Sum_probs=21.1
Q ss_pred CceEEE-EcCCCCCCCHH--HHHHHHHHHHHHH---HCCCe--EE-EcCCCcC
Q 039983 11 FKRVCV-FCGSSPDYKYC--YRKAAVDLGNELV---SRGLD--LV-YGGGSVG 54 (220)
Q Consensus 11 ~~~I~V-fgss~~~~~~~--~~~~A~~lG~~lA---~~g~~--lV-tGGg~~G 54 (220)
++.|-| ||||....+.. -.+.-+++++.|+ +.|+. || +|++..|
T Consensus 9 ~~~iViK~Ggs~l~~~~~~~~~~~i~~~~~~I~~~~~~g~~vvlV~Sga~~~g 61 (266)
T PRK12314 9 AKRIVIKVGSSTLSYENGKINLERIEQLVFVISDLMNKGKEVILVSSGAIGAG 61 (266)
T ss_pred CCEEEEEeCCCeeeCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEeeCccccc
Confidence 444444 99988752110 1123344444444 45644 43 6655433
No 308
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=23.86 E-value=1.4e+02 Score=23.39 Aligned_cols=39 Identities=18% Similarity=0.202 Sum_probs=25.7
Q ss_pred HHHHHHHHCCCeEEEcCCCcChhHHHHHHHHhcCCcEEEEe
Q 039983 34 DLGNELVSRGLDLVYGGGSVGLMGLISEEVHRGGRHVLGII 74 (220)
Q Consensus 34 ~lG~~lA~~g~~lVtGGg~~GlM~ava~gA~~~gG~viGv~ 74 (220)
.|.+.+.+.+..|.||||. ++..-++..+...|.||-+-
T Consensus 54 ~l~~l~~~~~~VIa~GGG~--~~~~~~~~~L~~~g~vI~L~ 92 (158)
T PF01202_consen 54 ALRELLKENNCVIACGGGI--VLKEENRELLKENGLVIYLD 92 (158)
T ss_dssp HHHHHHCSSSEEEEE-TTG--GGSHHHHHHHHHHSEEEEEE
T ss_pred HHHHHhccCcEEEeCCCCC--cCcHHHHHHHHhCCEEEEEe
Confidence 3333344447777788875 66666777888889988883
No 309
>KOG1584 consensus Sulfotransferase [General function prediction only]
Probab=23.65 E-value=1.7e+02 Score=26.53 Aligned_cols=58 Identities=22% Similarity=0.379 Sum_probs=37.6
Q ss_pred cCCcccHHHHHHHHHHHHhccCCCcEEEEcCCCCchhHHHHHHHHHHcCCCCccccCcEEE------cCCHHHHHHHHHh
Q 039983 115 PGGFGTLEELFEVTTWSQLGIHNKPVGLINVEGYYDPILNFIDKSIDEGFIYPSQRSIIVS------ASNAKELVQKLED 188 (220)
Q Consensus 115 pGG~GTL~El~~~~t~~qlg~~~kPIill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~------~~d~ee~~~~l~~ 188 (220)
-.+.||++|+|+... .=+++++ -||++++.|.+ +. +.+.|.| -.|+...++.|.+
T Consensus 151 ~~~~~~~e~~fe~F~--------~G~~~~G--p~~dHVl~~W~-~~--------~~~~VLFl~YEdmk~dp~~~ikrlae 211 (297)
T KOG1584|consen 151 QPGPGTFEEFFESFC--------NGVVPYG--PWWDHVLGYWE-LE--------DPKNVLFLKYEDMKADPKGEIKKLAE 211 (297)
T ss_pred CCCCCcHHHHHHHHh--------CCcCCcC--ChHHHHHHHHH-hc--------CCCceEEEEHHHhhhCHHHHHHHHHH
Confidence 356788999999985 2244444 59999999876 21 1222221 3577778888887
Q ss_pred hcC
Q 039983 189 YVP 191 (220)
Q Consensus 189 ~~~ 191 (220)
|..
T Consensus 212 FLg 214 (297)
T KOG1584|consen 212 FLG 214 (297)
T ss_pred HhC
Confidence 753
No 310
>PF01320 Colicin_Pyocin: Colicin immunity protein / pyocin immunity protein; InterPro: IPR023802 Bacterial colicin and pyocin immunity proteins [, ] can bind specifically to the DNase-type colicins and pyocins and inhibit their bactericidal activity. The 1.8-angstrom crystal structure of the ImmE7 protein consists of four antiparallel alpha-helices []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. Pyocin protects a cell that harbours the plasmid ColE2 encoding colicin E2 against colicin E2; it is thus essential both for autonomous replication and colicin E2 immunity []. This entry represents the structural domain of colicin and pyocin immunity proteins.; GO: 0015643 toxin binding, 0030153 bacteriocin immunity; PDB: 1GXH_A 1GXG_A 1MZ8_C 2ERH_A 1ZNV_C 1AYI_A 1UNK_A 2JBG_A 7CEI_A 1CEI_A ....
Probab=23.62 E-value=75 Score=23.35 Aligned_cols=45 Identities=13% Similarity=0.385 Sum_probs=30.1
Q ss_pred EcCCCCchhHHHHHHHHHHcCCCCccccCcEEEc-----CCHHHHHHHHHhhcC
Q 039983 143 INVEGYYDPILNFIDKSIDEGFIYPSQRSIIVSA-----SNAKELVQKLEDYVP 191 (220)
Q Consensus 143 l~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~-----~d~ee~~~~l~~~~~ 191 (220)
+.++.+.+.|+..+.++++. ++-.++|++- ++|+.+++.+++|..
T Consensus 27 ~~~ee~~d~lv~hF~~iteH----P~gSDLIfYP~~~~edsPegIv~~vKeWRa 76 (85)
T PF01320_consen 27 LKTEEEHDELVDHFEKITEH----PDGSDLIFYPEDGREDSPEGIVKEVKEWRA 76 (85)
T ss_dssp SSSCHHHHHHHHHHHHHH------TTTTHHHHS-STTSTSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCC----CCCCceeeeCCCCCCCCHHHHHHHHHHHHH
Confidence 44455777888777766544 3345666654 589999999999864
No 311
>PRK07890 short chain dehydrogenase; Provisional
Probab=23.59 E-value=3.7e+02 Score=22.07 Aligned_cols=54 Identities=20% Similarity=0.233 Sum_probs=0.0
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEcCCCcChhHHHHHHHHhcCCcEEEE
Q 039983 12 KRVCVFCGSSPDYKYCYRKAAVDLGNELVSRGLDLVYGGGSVGLMGLISEEVHRGGRHVLGI 73 (220)
Q Consensus 12 ~~I~Vfgss~~~~~~~~~~~A~~lG~~lA~~g~~lVtGGg~~GlM~ava~gA~~~gG~viGv 73 (220)
++|.|.|+++- ..+.+++.|+++|+.|+.......-.+.........+..+..+
T Consensus 6 k~vlItGa~~~--------IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~ 59 (258)
T PRK07890 6 KVVVVSGVGPG--------LGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLGRRALAV 59 (258)
T ss_pred CEEEEECCCCc--------HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhCCceEEE
No 312
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=23.51 E-value=1.7e+02 Score=24.14 Aligned_cols=63 Identities=14% Similarity=0.236 Sum_probs=33.8
Q ss_pred EEEecCCcccH-HHHHHHHHHHHhccCCCcEEEEcCCCCchhHHHHH-HHHHHcCCCCccccCcEEEc-CCHHHHHHHHH
Q 039983 111 FIALPGGFGTL-EELFEVTTWSQLGIHNKPVGLINVEGYYDPILNFI-DKSIDEGFIYPSQRSIIVSA-SNAKELVQKLE 187 (220)
Q Consensus 111 ~IvlpGG~GTL-~El~~~~t~~qlg~~~kPIill~~~g~~~~l~~~l-~~~~~~g~i~~~~~~~i~~~-~d~ee~~~~l~ 187 (220)
.|++.||.||- ..+ | ...+||.+=++ | .+++++. +.+.+.|+ .+.++++ ...+.+.+++.
T Consensus 3 aiIla~G~g~Rl~pl----t----~~~pK~llpi~--g--~piI~~~l~~l~~~Gi-----~~I~iv~~~~~~~i~~~l~ 65 (217)
T cd04197 3 AVVLADSFNRRFRPL----T----KEKPRCLLPLA--N--VPLIDYTLEFLALNGV-----EEVFVFCCSHSDQIKEYIE 65 (217)
T ss_pred EEEEcCCCccccccc----c----cCCCceeeEEC--C--EehHHHHHHHHHHCCC-----CeEEEEeCCCHHHHHHHHh
Confidence 47888889984 221 1 11245554443 4 2566654 66766664 2233333 34667777776
Q ss_pred hhc
Q 039983 188 DYV 190 (220)
Q Consensus 188 ~~~ 190 (220)
+.+
T Consensus 66 ~~~ 68 (217)
T cd04197 66 KSK 68 (217)
T ss_pred hcc
Confidence 643
No 313
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=23.45 E-value=53 Score=30.74 Aligned_cols=25 Identities=40% Similarity=0.740 Sum_probs=14.6
Q ss_pred eEEEcCCCcChhHHHHHHHHhcCCcEE
Q 039983 45 DLVYGGGSVGLMGLISEEVHRGGRHVL 71 (220)
Q Consensus 45 ~lVtGGg~~GlM~ava~gA~~~gG~vi 71 (220)
.+|-|||+.|+|-|..- .+.|-+|+
T Consensus 3 viIIGgGaAGl~aA~~a--a~~g~~V~ 27 (409)
T PF03486_consen 3 VIIIGGGAAGLMAAITA--AEKGARVL 27 (409)
T ss_dssp EEEE--SHHHHHHHHHH--HHTT--EE
T ss_pred EEEECCCHHHHHHHHHH--HhCCCCEE
Confidence 46789999999988654 34454443
No 314
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=23.40 E-value=2e+02 Score=26.60 Aligned_cols=13 Identities=38% Similarity=0.532 Sum_probs=10.7
Q ss_pred HhCCeEEEecCCc
Q 039983 106 RNADCFIALPGGF 118 (220)
Q Consensus 106 ~~sda~IvlpGG~ 118 (220)
..+|++|.++||.
T Consensus 105 ~~~D~IiavGGGS 117 (395)
T PRK15454 105 SGCDGVIAFGGGS 117 (395)
T ss_pred cCcCEEEEeCChH
Confidence 3789999999875
No 315
>PRK06300 enoyl-(acyl carrier protein) reductase; Provisional
Probab=23.37 E-value=1.1e+02 Score=27.26 Aligned_cols=16 Identities=13% Similarity=0.297 Sum_probs=9.1
Q ss_pred HHHHHHHHHCCCeEEE
Q 039983 33 VDLGNELVSRGLDLVY 48 (220)
Q Consensus 33 ~~lG~~lA~~g~~lVt 48 (220)
+.+++.||+.|+.||.
T Consensus 24 ~a~A~~la~~Ga~Vvv 39 (299)
T PRK06300 24 WGIAKALAEAGATILV 39 (299)
T ss_pred HHHHHHHHHCCCEEEE
Confidence 4455555666666555
No 316
>CHL00139 rpl18 ribosomal protein L18; Validated
Probab=23.33 E-value=2.9e+02 Score=21.06 Aligned_cols=40 Identities=25% Similarity=0.461 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHH----CCCeEE-E--cCCC-cChhHHHHHHHHhcCC
Q 039983 29 RKAAVDLGNELVS----RGLDLV-Y--GGGS-VGLMGLISEEVHRGGR 68 (220)
Q Consensus 29 ~~~A~~lG~~lA~----~g~~lV-t--GGg~-~GlM~ava~gA~~~gG 68 (220)
.+.|+.+|+.||+ .|+.-| + ||.. -|-+.|+++||.++|-
T Consensus 60 ~~aA~~vG~lla~ra~~~gi~~vvfDrgg~~yhGrV~a~a~~are~GL 107 (109)
T CHL00139 60 CDASKLVGQKLAKKSLKKGITKVVFDRGGKLYHGRIKALAEAAREAGL 107 (109)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEcCCCCccchHHHHHHHHHHHhCC
Confidence 3567788888775 465433 2 4422 4899999999999873
No 317
>PRK08589 short chain dehydrogenase; Validated
Probab=23.29 E-value=1.1e+02 Score=25.94 Aligned_cols=54 Identities=9% Similarity=0.025 Sum_probs=31.3
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEcCCCcChhHHHHHHHHhcCCcEEEEe
Q 039983 12 KRVCVFCGSSPDYKYCYRKAAVDLGNELVSRGLDLVYGGGSVGLMGLISEEVHRGGRHVLGII 74 (220)
Q Consensus 12 ~~I~Vfgss~~~~~~~~~~~A~~lG~~lA~~g~~lVtGGg~~GlM~ava~gA~~~gG~viGv~ 74 (220)
+++-|.|+++- ..+.+++.|+++|+.|+.-+.. .--+.......+.++.+..+.
T Consensus 7 k~vlItGas~g--------IG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~~~~~~~~~ 60 (272)
T PRK08589 7 KVAVITGASTG--------IGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKSNGGKAKAYH 60 (272)
T ss_pred CEEEEECCCch--------HHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHhcCCeEEEEE
Confidence 56778887662 3467777888889988765443 211222333333455655553
No 318
>PLN02275 transferase, transferring glycosyl groups
Probab=23.25 E-value=5e+02 Score=23.19 Aligned_cols=70 Identities=14% Similarity=0.209 Sum_probs=40.6
Q ss_pred HHHHHHHHhCCeEEEec-C--CcccHHHHHHHHHHHHhccCCCcEEEEcCCCCchhHHHHHHHHHHcCCCCccccCcEEE
Q 039983 99 QRKAEMARNADCFIALP-G--GFGTLEELFEVTTWSQLGIHNKPVGLINVEGYYDPILNFIDKSIDEGFIYPSQRSIIVS 175 (220)
Q Consensus 99 ~Rk~~~~~~sda~Ivlp-G--G~GTL~El~~~~t~~qlg~~~kPIill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~ 175 (220)
+.-..++..||++|+.. . |.|--.=+.|+++ .++||+..+.+|. .+ ++.+ .....+
T Consensus 298 ~~~~~~l~~aDv~v~~~~s~~~e~~p~~llEAmA------~G~PVVa~~~gg~----~e----iv~~-----g~~G~l-- 356 (371)
T PLN02275 298 EDYPLLLGSADLGVSLHTSSSGLDLPMKVVDMFG------CGLPVCAVSYSCI----GE----LVKD-----GKNGLL-- 356 (371)
T ss_pred HHHHHHHHhCCEEEEeccccccccccHHHHHHHH------CCCCEEEecCCCh----HH----HccC-----CCCeEE--
Confidence 44456678999998631 2 2233344677776 5899999876442 22 2221 112222
Q ss_pred cCCHHHHHHHHHhh
Q 039983 176 ASNAKELVQKLEDY 189 (220)
Q Consensus 176 ~~d~ee~~~~l~~~ 189 (220)
++|++++.+.|.+.
T Consensus 357 v~~~~~la~~i~~l 370 (371)
T PLN02275 357 FSSSSELADQLLEL 370 (371)
T ss_pred ECCHHHHHHHHHHh
Confidence 35788888877653
No 319
>PRK07062 short chain dehydrogenase; Provisional
Probab=23.25 E-value=1.1e+02 Score=25.54 Aligned_cols=31 Identities=23% Similarity=0.230 Sum_probs=18.4
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEcC
Q 039983 12 KRVCVFCGSSPDYKYCYRKAAVDLGNELVSRGLDLVYGG 50 (220)
Q Consensus 12 ~~I~Vfgss~~~~~~~~~~~A~~lG~~lA~~g~~lVtGG 50 (220)
+.+-|.|+++- ..+++++.|+++|+.|+.-+
T Consensus 9 k~~lItGas~g--------iG~~ia~~l~~~G~~V~~~~ 39 (265)
T PRK07062 9 RVAVVTGGSSG--------IGLATVELLLEAGASVAICG 39 (265)
T ss_pred CEEEEeCCCch--------HHHHHHHHHHHCCCeEEEEe
Confidence 45667776652 23456666667777765433
No 320
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=23.18 E-value=1.2e+02 Score=25.39 Aligned_cols=31 Identities=19% Similarity=0.160 Sum_probs=19.9
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEcC
Q 039983 12 KRVCVFCGSSPDYKYCYRKAAVDLGNELVSRGLDLVYGG 50 (220)
Q Consensus 12 ~~I~Vfgss~~~~~~~~~~~A~~lG~~lA~~g~~lVtGG 50 (220)
+++-|.|+++- ..+.+++.|+++|+.|+.-+
T Consensus 9 k~~lItGas~g--------IG~aia~~l~~~G~~vv~~~ 39 (251)
T PRK12481 9 KVAIITGCNTG--------LGQGMAIGLAKAGADIVGVG 39 (251)
T ss_pred CEEEEeCCCch--------HHHHHHHHHHHCCCEEEEec
Confidence 45667776652 34566777777888876433
No 321
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=23.18 E-value=3e+02 Score=23.96 Aligned_cols=65 Identities=20% Similarity=0.188 Sum_probs=36.0
Q ss_pred HHHHHHHHhCCeEEEe---cCCcccHHHHHHHHHHHHhccCCCcEEEEcCCCCchhHHHHHHHHHHcCCCCccccCcEEE
Q 039983 99 QRKAEMARNADCFIAL---PGGFGTLEELFEVTTWSQLGIHNKPVGLINVEGYYDPILNFIDKSIDEGFIYPSQRSIIVS 175 (220)
Q Consensus 99 ~Rk~~~~~~sda~Ivl---pGG~GTL~El~~~~t~~qlg~~~kPIill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~ 175 (220)
+=+..|++.-++=+++ .||.|+.+-+.-+.. .+.||+++.-. ........
T Consensus 180 e~n~aL~~~~~i~~lVtK~SG~~g~~eKi~AA~~------lgi~vivI~RP---------------------~~~~~~~~ 232 (248)
T PRK08057 180 ELERALLRQHRIDVVVTKNSGGAGTEAKLEAARE------LGIPVVMIARP---------------------ALPYADRE 232 (248)
T ss_pred HHHHHHHHHcCCCEEEEcCCCchhhHHHHHHHHH------cCCeEEEEeCC---------------------CCCCCCcc
Confidence 3444555554432222 466677766644443 37788877521 00111244
Q ss_pred cCCHHHHHHHHHhhc
Q 039983 176 ASNAKELVQKLEDYV 190 (220)
Q Consensus 176 ~~d~ee~~~~l~~~~ 190 (220)
++|.+|+++++.+..
T Consensus 233 ~~~~~e~~~~l~~~~ 247 (248)
T PRK08057 233 FEDVAELVAWLRHLL 247 (248)
T ss_pred cCCHHHHHHHHHHhh
Confidence 688999999888753
No 322
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=23.17 E-value=2.4e+02 Score=25.55 Aligned_cols=57 Identities=23% Similarity=0.324 Sum_probs=35.0
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHHHCCCe-EEEcCCCcChhHHHHHHHHhcCCcEEEE
Q 039983 15 CVFCGSSPDYKYCYRKAAVDLGNELVSRGLD-LVYGGGSVGLMGLISEEVHRGGRHVLGI 73 (220)
Q Consensus 15 ~Vfgss~~~~~~~~~~~A~~lG~~lA~~g~~-lVtGGg~~GlM~ava~gA~~~gG~viGv 73 (220)
++.|+||........+.-+++.+.|-+.+.. ||+=||. |-|..+++=+ +.|-.||||
T Consensus 66 t~LgtsR~~~~~~~~~~~~~~~~~l~~~~Id~LivIGGd-gS~~~a~~L~-~~gi~vigi 123 (324)
T TIGR02483 66 TILGSSRTNPFKYEEDGDDKIVANLKELGLDALIAIGGD-GTLGIARRLA-DKGLPVVGV 123 (324)
T ss_pred ccccCCCCCccccCHHHHHHHHHHHHHcCCCEEEEECCc-hHHHHHHHHH-hcCCCEEee
Confidence 5778888643210123345666667776655 4455666 8888776643 457888887
No 323
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=23.15 E-value=2.1e+02 Score=24.47 Aligned_cols=83 Identities=19% Similarity=0.311 Sum_probs=41.5
Q ss_pred CCeEEEcCCCcChhHHHHHHHHhcCCc-EEEEeCCcccccccCC-CCCceEeecCCHHHHHHHHH--HhCCeEEEecCCc
Q 039983 43 GLDLVYGGGSVGLMGLISEEVHRGGRH-VLGIIPKALMKKELTG-VTLGEVKPVDHMHQRKAEMA--RNADCFIALPGGF 118 (220)
Q Consensus 43 g~~lVtGGg~~GlM~ava~gA~~~gG~-viGv~P~~~~~~e~~~-~~~~~~~~~~~~~~Rk~~~~--~~sda~IvlpGG~ 118 (220)
...+|+|+|+.|++- ..-|+..|.. ++.+-... ...+... -..+.++........-..+. ...|.++=..|+-
T Consensus 122 ~~VlV~G~G~vG~~~--~~~ak~~G~~~Vi~~~~~~-~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid~~G~~ 198 (280)
T TIGR03366 122 RRVLVVGAGMLGLTA--AAAAAAAGAARVVAADPSP-DRRELALSFGATALAEPEVLAERQGGLQNGRGVDVALEFSGAT 198 (280)
T ss_pred CEEEEECCCHHHHHH--HHHHHHcCCCEEEEECCCH-HHHHHHHHcCCcEecCchhhHHHHHHHhCCCCCCEEEECCCCh
Confidence 466889887777663 4557777876 66663211 1111110 01122222222211111111 1358888878877
Q ss_pred ccHHHHHHHH
Q 039983 119 GTLEELFEVT 128 (220)
Q Consensus 119 GTL~El~~~~ 128 (220)
.++++.+..+
T Consensus 199 ~~~~~~~~~l 208 (280)
T TIGR03366 199 AAVRACLESL 208 (280)
T ss_pred HHHHHHHHHh
Confidence 7787776655
No 324
>PRK09072 short chain dehydrogenase; Provisional
Probab=23.14 E-value=1.2e+02 Score=25.48 Aligned_cols=29 Identities=28% Similarity=0.320 Sum_probs=16.9
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEE
Q 039983 12 KRVCVFCGSSPDYKYCYRKAAVDLGNELVSRGLDLVY 48 (220)
Q Consensus 12 ~~I~Vfgss~~~~~~~~~~~A~~lG~~lA~~g~~lVt 48 (220)
++|.|.|+++. ..+++++.|+++|+.|+-
T Consensus 6 ~~vlItG~s~~--------iG~~ia~~l~~~G~~V~~ 34 (263)
T PRK09072 6 KRVLLTGASGG--------IGQALAEALAAAGARLLL 34 (263)
T ss_pred CEEEEECCCch--------HHHHHHHHHHHCCCEEEE
Confidence 45667776552 235556666667776543
No 325
>TIGR00253 RNA_bind_YhbY putative RNA-binding protein, YhbY family. A combination of crystal structure, molecular modeling, and bioinformatic data together suggest that members of this family, including YhbY of E. coli, are RNA binding proteins.
Probab=23.11 E-value=2.4e+02 Score=20.94 Aligned_cols=53 Identities=17% Similarity=0.226 Sum_probs=35.4
Q ss_pred CCCcEEEEcCCCCchhHHHHHHH-HHHcCCCCccccCcEEEcCCHHHHHHHHHhhc
Q 039983 136 HNKPVGLINVEGYYDPILNFIDK-SIDEGFIYPSQRSIIVSASNAKELVQKLEDYV 190 (220)
Q Consensus 136 ~~kPIill~~~g~~~~l~~~l~~-~~~~g~i~~~~~~~i~~~~d~ee~~~~l~~~~ 190 (220)
+-+|++.++.+|.-+.+++.++. +-....|.-.-.. -.-+|..|+.+.|.+..
T Consensus 15 ~l~p~v~IGK~Glt~~vi~ei~~aL~~hELIKVkvl~--~~~~~~~e~a~~i~~~~ 68 (95)
T TIGR00253 15 HLKPVVLVGKNGLTEGVIKEIEQALEHRELIKVKVAT--EDREDKTLIAEALVKET 68 (95)
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHHhCCcEEEEecC--CChhHHHHHHHHHHHHH
Confidence 45999999999999999999865 5455555432211 11345667777777653
No 326
>TIGR02076 pyrH_arch uridylate kinase, putative. This family consists of the archaeal and spirochete proteins most closely related to bacterial uridylate kinases (TIGR02075), an enzyme involved in pyrimidine biosynthesis. Members are likely, but not known, to be functionally equivalent to their bacterial counterparts. However, substantial sequence differences suggest that regulatory mechanisms may be different; the bacterial form is allosterically regulated by GTP.
Probab=23.08 E-value=1e+02 Score=25.81 Aligned_cols=36 Identities=22% Similarity=0.183 Sum_probs=19.2
Q ss_pred EcCCCCCCC---HHHHHHHHHHHHHHHHCCCeEEEcCCC
Q 039983 17 FCGSSPDYK---YCYRKAAVDLGNELVSRGLDLVYGGGS 52 (220)
Q Consensus 17 fgss~~~~~---~~~~~~A~~lG~~lA~~g~~lVtGGg~ 52 (220)
+|||..... +...+.++++.+...+....||.|||.
T Consensus 5 lGGs~l~~~~~~~~i~~i~~~i~~~~~~~~viiV~ggG~ 43 (221)
T TIGR02076 5 LGGSVLSPEIDAEFIKEFANILRKLSDEHKVGVVVGGGK 43 (221)
T ss_pred echhhcCCCCCHHHHHHHHHHHHHHHhCCeEEEEECCcH
Confidence 566665432 344444555554432345667897765
No 327
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=23.03 E-value=2.1e+02 Score=24.09 Aligned_cols=120 Identities=18% Similarity=0.191 Sum_probs=57.5
Q ss_pred HHHHHHHHHHCCCeEE-EcCCCcChhHHHHHHHHhcCCcEEEEeCCccc------ccccCCCCCceEeecCCHHHHHHHH
Q 039983 32 AVDLGNELVSRGLDLV-YGGGSVGLMGLISEEVHRGGRHVLGIIPKALM------KKELTGVTLGEVKPVDHMHQRKAEM 104 (220)
Q Consensus 32 A~~lG~~lA~~g~~lV-tGGg~~GlM~ava~gA~~~gG~viGv~P~~~~------~~e~~~~~~~~~~~~~~~~~Rk~~~ 104 (220)
|-.|+++=-+.|-.++ -|+|. |-+..-.- ..--.++|++| +... .+......+..+.+...-. -..+
T Consensus 24 al~ls~L~~~~g~~l~DIGaGt-Gsi~iE~a-~~~p~~~v~AI--e~~~~a~~~~~~N~~~fg~~n~~vv~g~A--p~~L 97 (187)
T COG2242 24 ALTLSKLRPRPGDRLWDIGAGT-GSITIEWA-LAGPSGRVIAI--ERDEEALELIERNAARFGVDNLEVVEGDA--PEAL 97 (187)
T ss_pred HHHHHhhCCCCCCEEEEeCCCc-cHHHHHHH-HhCCCceEEEE--ecCHHHHHHHHHHHHHhCCCcEEEEeccc--hHhh
Confidence 4455555344566666 46666 87765322 22346899998 2110 0111111233333322111 1122
Q ss_pred HHhCCe-EEEecCCcccHHHHHHHHHHHHhccCCCc--EEEEcCCCCchhHHHHHHHHHHcCC
Q 039983 105 ARNADC-FIALPGGFGTLEELFEVTTWSQLGIHNKP--VGLINVEGYYDPILNFIDKSIDEGF 164 (220)
Q Consensus 105 ~~~sda-~IvlpGG~GTL~El~~~~t~~qlg~~~kP--Iill~~~g~~~~l~~~l~~~~~~g~ 164 (220)
-..++. .|+++|| |+++|+++++.. . =|| -++.|.- --+.+...++.+.+.|+
T Consensus 98 ~~~~~~daiFIGGg-~~i~~ile~~~~-~----l~~ggrlV~nai-tlE~~~~a~~~~~~~g~ 153 (187)
T COG2242 98 PDLPSPDAIFIGGG-GNIEEILEAAWE-R----LKPGGRLVANAI-TLETLAKALEALEQLGG 153 (187)
T ss_pred cCCCCCCEEEECCC-CCHHHHHHHHHH-H----cCcCCeEEEEee-cHHHHHHHHHHHHHcCC
Confidence 233222 3555666 999999998642 2 244 4555531 12334444455556665
No 328
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=23.02 E-value=5.1e+02 Score=23.69 Aligned_cols=70 Identities=17% Similarity=0.305 Sum_probs=37.3
Q ss_pred HHHHCCCeEEE---cCCC-cChhHHHHHHHHhcCCcEEEEeCCcccccccCCCCCceEeecCCHHHHHHHHHHhCCeEEE
Q 039983 38 ELVSRGLDLVY---GGGS-VGLMGLISEEVHRGGRHVLGIIPKALMKKELTGVTLGEVKPVDHMHQRKAEMARNADCFIA 113 (220)
Q Consensus 38 ~lA~~g~~lVt---GGg~-~GlM~ava~gA~~~gG~viGv~P~~~~~~e~~~~~~~~~~~~~~~~~Rk~~~~~~sda~Iv 113 (220)
.|-..+..+|+ |||. +|+=-.+++-+.+.+-.+++|.|.-+. .|.. .....-..--..|.+.+|++|+
T Consensus 98 ~le~~D~vfI~aglGGGTGSG~apvia~~ake~~~l~vaivt~Pf~-~Eg~-------~r~~nA~~~l~~L~~~~D~viv 169 (349)
T TIGR00065 98 LLEGADMVFITAGMGGGTGTGAAPVVAKIAKELGALTVAVVTKPFK-FEGL-------KRRKKAEEGLERLKQAVDTLIV 169 (349)
T ss_pred HHhCCCEEEEEEeccCccchhHHHHHHHHHHHcCCCEEEEEeCCcc-ccch-------hhHHHHHHHHHHHHHhCCEEEE
Confidence 34334555554 4433 466666778888888889998642110 1110 0111112334455677888777
Q ss_pred ec
Q 039983 114 LP 115 (220)
Q Consensus 114 lp 115 (220)
++
T Consensus 170 id 171 (349)
T TIGR00065 170 IP 171 (349)
T ss_pred Ee
Confidence 75
No 329
>PRK07814 short chain dehydrogenase; Provisional
Probab=22.95 E-value=1.2e+02 Score=25.52 Aligned_cols=33 Identities=9% Similarity=0.078 Sum_probs=21.4
Q ss_pred CceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEcCC
Q 039983 11 FKRVCVFCGSSPDYKYCYRKAAVDLGNELVSRGLDLVYGGG 51 (220)
Q Consensus 11 ~~~I~Vfgss~~~~~~~~~~~A~~lG~~lA~~g~~lVtGGg 51 (220)
.++|.|.|+++- ..+.+++.|+++|+.|+.-+.
T Consensus 10 ~~~vlItGasgg--------IG~~~a~~l~~~G~~Vi~~~r 42 (263)
T PRK07814 10 DQVAVVTGAGRG--------LGAAIALAFAEAGADVLIAAR 42 (263)
T ss_pred CCEEEEECCCCh--------HHHHHHHHHHHCCCEEEEEeC
Confidence 356778887652 345666777778888765443
No 330
>PRK07102 short chain dehydrogenase; Provisional
Probab=22.95 E-value=1.5e+02 Score=24.45 Aligned_cols=30 Identities=13% Similarity=0.112 Sum_probs=25.6
Q ss_pred CeEEEcCCCcChhHHHHHHHHhcCCcEEEEe
Q 039983 44 LDLVYGGGSVGLMGLISEEVHRGGRHVLGII 74 (220)
Q Consensus 44 ~~lVtGGg~~GlM~ava~gA~~~gG~viGv~ 74 (220)
..+|+||.. |+-.++++...+.|-.|+.+.
T Consensus 3 ~vlItGas~-giG~~~a~~l~~~G~~Vi~~~ 32 (243)
T PRK07102 3 KILIIGATS-DIARACARRYAAAGARLYLAA 32 (243)
T ss_pred EEEEEcCCc-HHHHHHHHHHHhcCCEEEEEe
Confidence 368999988 999999999999888887774
No 331
>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.
Probab=22.69 E-value=1.1e+02 Score=26.08 Aligned_cols=12 Identities=42% Similarity=1.018 Sum_probs=9.4
Q ss_pred EEEecCCcccHH
Q 039983 111 FIALPGGFGTLE 122 (220)
Q Consensus 111 ~IvlpGG~GTL~ 122 (220)
.|++|||.|..+
T Consensus 85 alviPGG~~~~~ 96 (213)
T cd03133 85 ALIFPGGFGAAK 96 (213)
T ss_pred EEEECCCCchhh
Confidence 568999998753
No 332
>PRK05723 flavodoxin; Provisional
Probab=22.43 E-value=1.7e+02 Score=23.24 Aligned_cols=37 Identities=11% Similarity=0.081 Sum_probs=22.9
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEE
Q 039983 12 KRVCVFCGSSPDYKYCYRKAAVDLGNELVSRGLDLVY 48 (220)
Q Consensus 12 ~~I~Vfgss~~~~~~~~~~~A~~lG~~lA~~g~~lVt 48 (220)
++++|||-....-.+.|+..++.|=+.|++.|..-|.
T Consensus 85 ~~~aVfGLGDs~Y~~~Fc~a~~~ld~~L~~lGA~rv~ 121 (151)
T PRK05723 85 LPGAVIALGDSSYGDTFCGGGEQMRELFAELGVREVQ 121 (151)
T ss_pred CEEEEEeEeCCcchHHHhHHHHHHHHHHHHCCCcEee
Confidence 4677777322222256777777777777777666554
No 333
>PRK08303 short chain dehydrogenase; Provisional
Probab=22.34 E-value=1.1e+02 Score=26.85 Aligned_cols=31 Identities=23% Similarity=0.179 Sum_probs=20.1
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEcC
Q 039983 12 KRVCVFCGSSPDYKYCYRKAAVDLGNELVSRGLDLVYGG 50 (220)
Q Consensus 12 ~~I~Vfgss~~~~~~~~~~~A~~lG~~lA~~g~~lVtGG 50 (220)
+.+.|.|+++- ..+++++.|++.|+.|+.-+
T Consensus 9 k~~lITGgs~G--------IG~aia~~la~~G~~Vv~~~ 39 (305)
T PRK08303 9 KVALVAGATRG--------AGRGIAVELGAAGATVYVTG 39 (305)
T ss_pred CEEEEeCCCch--------HHHHHHHHHHHCCCEEEEEe
Confidence 56777777662 23566677777888876544
No 334
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=22.25 E-value=1.9e+02 Score=24.07 Aligned_cols=38 Identities=16% Similarity=0.187 Sum_probs=21.7
Q ss_pred HHHHhCCeEEEecCCcccHHHHHHHHHHHHhccCCCcEEEEcC
Q 039983 103 EMARNADCFIALPGGFGTLEELFEVTTWSQLGIHNKPVGLINV 145 (220)
Q Consensus 103 ~~~~~sda~IvlpGG~GTL~El~~~~t~~qlg~~~kPIill~~ 145 (220)
+.....|++|+.+.....+.++...+. ..++||++++.
T Consensus 51 ~~~~~~Dgiii~~~~~~~~~~~i~~~~-----~~~iPvV~~~~ 88 (282)
T cd06318 51 LLTRGVNVLIINPVDPEGLVPAVAAAK-----AAGVPVVVVDS 88 (282)
T ss_pred HHHcCCCEEEEecCCccchHHHHHHHH-----HCCCCEEEecC
Confidence 344568888887654443333322221 24678888864
No 335
>PRK12829 short chain dehydrogenase; Provisional
Probab=22.25 E-value=1.3e+02 Score=24.99 Aligned_cols=28 Identities=21% Similarity=0.242 Sum_probs=16.0
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEE
Q 039983 12 KRVCVFCGSSPDYKYCYRKAAVDLGNELVSRGLDLV 47 (220)
Q Consensus 12 ~~I~Vfgss~~~~~~~~~~~A~~lG~~lA~~g~~lV 47 (220)
++|.|.|+++. ..+.+++.|+++|+.|+
T Consensus 12 ~~vlItGa~g~--------iG~~~a~~L~~~g~~V~ 39 (264)
T PRK12829 12 LRVLVTGGASG--------IGRAIAEAFAEAGARVH 39 (264)
T ss_pred CEEEEeCCCCc--------HHHHHHHHHHHCCCEEE
Confidence 45666666542 23455566666666654
No 336
>PF12965 DUF3854: Domain of unknown function (DUF3854); InterPro: IPR024385 This is a family of uncharacterised proteins, found by clustering human gut metagenomic sequences [].
Probab=22.24 E-value=3.8e+02 Score=20.86 Aligned_cols=49 Identities=24% Similarity=0.403 Sum_probs=33.7
Q ss_pred ceEEEEcCCC--CCCCHHHHHHHHHHHHHHHHCCCeEEE-----cCCCcChhHHHHH
Q 039983 12 KRVCVFCGSS--PDYKYCYRKAAVDLGNELVSRGLDLVY-----GGGSVGLMGLISE 61 (220)
Q Consensus 12 ~~I~Vfgss~--~~~~~~~~~~A~~lG~~lA~~g~~lVt-----GGg~~GlM~ava~ 61 (220)
+.|.|.-.+. ......-.+..++|+++|.++|+.+-. +.+. |+...++.
T Consensus 69 r~v~iaFD~D~~~~Tn~~V~~a~~~l~~~L~~~G~~v~~~~w~~~~~K-GiDD~l~~ 124 (130)
T PF12965_consen 69 REVYIAFDADTKPKTNKNVRRAIKRLGKLLKEAGCKVKIITWPPGEGK-GIDDLLAA 124 (130)
T ss_pred ceEEEEecCCCccchhHHHHHHHHHHHHHHHHCCCEEEEEEeCCCCCC-CHhHHHHh
Confidence 3454444444 333467778889999999999988542 6666 99887643
No 337
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=22.18 E-value=9.5e+02 Score=25.40 Aligned_cols=18 Identities=28% Similarity=-0.068 Sum_probs=11.2
Q ss_pred cEEEcCCHHHHHHHHHhh
Q 039983 172 IIVSASNAKELVQKLEDY 189 (220)
Q Consensus 172 ~i~~~~d~ee~~~~l~~~ 189 (220)
-+.+++|.+|+.+.+.+.
T Consensus 177 Gv~iv~~~eeL~~~~~~~ 194 (1050)
T TIGR01369 177 GGGIAYNREELKEIAERA 194 (1050)
T ss_pred CeEEECCHHHHHHHHHHH
Confidence 455667777766665544
No 338
>PRK05693 short chain dehydrogenase; Provisional
Probab=22.14 E-value=1.3e+02 Score=25.39 Aligned_cols=30 Identities=17% Similarity=0.103 Sum_probs=18.3
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEc
Q 039983 12 KRVCVFCGSSPDYKYCYRKAAVDLGNELVSRGLDLVYG 49 (220)
Q Consensus 12 ~~I~Vfgss~~~~~~~~~~~A~~lG~~lA~~g~~lVtG 49 (220)
++|-|.|+++- ..+.+.+.|+++|+.|+.-
T Consensus 2 k~vlItGasgg--------iG~~la~~l~~~G~~V~~~ 31 (274)
T PRK05693 2 PVVLITGCSSG--------IGRALADAFKAAGYEVWAT 31 (274)
T ss_pred CEEEEecCCCh--------HHHHHHHHHHHCCCEEEEE
Confidence 46777776652 2345556667778876643
No 339
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=22.13 E-value=2.4e+02 Score=23.53 Aligned_cols=19 Identities=42% Similarity=0.522 Sum_probs=10.6
Q ss_pred hhHHHHHHHHhcCCcEEEE
Q 039983 55 LMGLISEEVHRGGRHVLGI 73 (220)
Q Consensus 55 lM~ava~gA~~~gG~viGv 73 (220)
+.+++.+.+.+.|..++||
T Consensus 65 ~~~~~~~~~~~~~~PvlGi 83 (209)
T PRK13146 65 LGEAVIEAVLAAGRPFLGI 83 (209)
T ss_pred cHHHHHHHHHhCCCcEEEE
Confidence 3344455455566666776
No 340
>cd04260 AAK_AKi-DapG-BS AAK_AKi-DapG-BS: Amino Acid Kinase Superfamily (AAK), AKi-DapG; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional class enzyme found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and two bet
Probab=22.12 E-value=1.1e+02 Score=26.21 Aligned_cols=28 Identities=21% Similarity=0.209 Sum_probs=18.6
Q ss_pred EEcCCCCCCCHHHHHHHHHHHHHHHHCCC
Q 039983 16 VFCGSSPDYKYCYRKAAVDLGNELVSRGL 44 (220)
Q Consensus 16 Vfgss~~~~~~~~~~~A~~lG~~lA~~g~ 44 (220)
=||||...+.+.+.+.++.+.+... .|+
T Consensus 5 K~GGs~l~~~~~~~~~~~~I~~~~~-~g~ 32 (244)
T cd04260 5 KFGGTSVSTKERREQVAKKVKQAVD-EGY 32 (244)
T ss_pred EECchhcCCHHHHHHHHHHHHHHHH-CCC
Confidence 3899988755566666777776654 443
No 341
>PRK12361 hypothetical protein; Provisional
Probab=22.09 E-value=1e+02 Score=29.69 Aligned_cols=29 Identities=24% Similarity=0.346 Sum_probs=22.0
Q ss_pred EEEecCCcccHHHHHHHHHHHHhccCCCcEEEEc
Q 039983 111 FIALPGGFGTLEELFEVTTWSQLGIHNKPVGLIN 144 (220)
Q Consensus 111 ~IvlpGG~GTL~El~~~~t~~qlg~~~kPIill~ 144 (220)
.|+.-||=||++|+...+. ..+.|+.++-
T Consensus 300 ~Viv~GGDGTl~ev~~~l~-----~~~~~lgiiP 328 (547)
T PRK12361 300 IVIACGGDGTVTEVASELV-----NTDITLGIIP 328 (547)
T ss_pred EEEEECCCcHHHHHHHHHh-----cCCCCEEEec
Confidence 4667899999999987774 1357888873
No 342
>PRK06914 short chain dehydrogenase; Provisional
Probab=22.07 E-value=1.2e+02 Score=25.57 Aligned_cols=33 Identities=21% Similarity=0.043 Sum_probs=21.5
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEcCCC
Q 039983 12 KRVCVFCGSSPDYKYCYRKAAVDLGNELVSRGLDLVYGGGS 52 (220)
Q Consensus 12 ~~I~Vfgss~~~~~~~~~~~A~~lG~~lA~~g~~lVtGGg~ 52 (220)
+.|.|.|+++. ..+.+.+.|+++|+.|+.-+..
T Consensus 4 k~~lItGasg~--------iG~~la~~l~~~G~~V~~~~r~ 36 (280)
T PRK06914 4 KIAIVTGASSG--------FGLLTTLELAKKGYLVIATMRN 36 (280)
T ss_pred CEEEEECCCch--------HHHHHHHHHHhCCCEEEEEeCC
Confidence 45777777662 3566777777888887754433
No 343
>PRK07041 short chain dehydrogenase; Provisional
Probab=22.06 E-value=1e+02 Score=25.13 Aligned_cols=27 Identities=30% Similarity=0.347 Sum_probs=15.3
Q ss_pred EEEcCCCcChhHHHHHHHHhcCCcEEEE
Q 039983 46 LVYGGGSVGLMGLISEEVHRGGRHVLGI 73 (220)
Q Consensus 46 lVtGGg~~GlM~ava~gA~~~gG~viGv 73 (220)
||||+.. |+-.++++...+.|-.++.+
T Consensus 1 lItGas~-~iG~~~a~~l~~~G~~v~~~ 27 (230)
T PRK07041 1 LVVGGSS-GIGLALARAFAAEGARVTIA 27 (230)
T ss_pred CeecCCC-hHHHHHHHHHHHCCCEEEEE
Confidence 3555555 66666666555555555554
No 344
>TIGR02991 ectoine_eutB ectoine utilization protein EutB. Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.
Probab=22.02 E-value=1.5e+02 Score=26.48 Aligned_cols=45 Identities=18% Similarity=0.234 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHCCCeEEEcCCCcChhHHHHHHHHhcCC--cEEEEeCC
Q 039983 31 AAVDLGNELVSRGLDLVYGGGSVGLMGLISEEVHRGGR--HVLGIIPK 76 (220)
Q Consensus 31 ~A~~lG~~lA~~g~~lVtGGg~~GlM~ava~gA~~~gG--~viGv~P~ 76 (220)
.+.|+-+.+...++.++..|++ |+..-++++.++.+. +++||=|.
T Consensus 157 ~a~Ei~~q~~~~d~vvv~~G~G-g~~~Gi~~~~k~~~p~~~vigvep~ 203 (317)
T TIGR02991 157 LGLEVVEQMPDLATVLVPLSGG-GLASGVAMAVKAARPDTRVIGVSME 203 (317)
T ss_pred HHHHHHHhCCCCCEEEEEcChh-HHHHHHHHHHHHhCCCCEEEEEEEC
Confidence 3444444433234466666666 999999999988764 78999774
No 345
>PRK10343 RNA-binding protein YhbY; Provisional
Probab=21.99 E-value=2.5e+02 Score=21.01 Aligned_cols=52 Identities=17% Similarity=0.183 Sum_probs=33.6
Q ss_pred CCCcEEEEcCCCCchhHHHHHHH-HHHcCCCCccccCcEEEcCCHHHHHHHHHhh
Q 039983 136 HNKPVGLINVEGYYDPILNFIDK-SIDEGFIYPSQRSIIVSASNAKELVQKLEDY 189 (220)
Q Consensus 136 ~~kPIill~~~g~~~~l~~~l~~-~~~~g~i~~~~~~~i~~~~d~ee~~~~l~~~ 189 (220)
+-+|++.++.+|.-+.+++.++. +.....|.-.-.. -.-++..|+.+.|.+.
T Consensus 17 ~l~Pvv~IGk~Glt~~vi~ei~~aL~~hELIKvkv~~--~~~~~~~e~~~~i~~~ 69 (97)
T PRK10343 17 PLKPVVLLGSNGLTEGVLAEIEQALEHHELIKVKIAT--EDRETKTLIVEAIVRE 69 (97)
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHHHCCcEEEEecC--CChhHHHHHHHHHHHH
Confidence 45999999999999999999875 4454555422110 1223456677777654
No 346
>PRK08226 short chain dehydrogenase; Provisional
Probab=21.95 E-value=4.6e+02 Score=21.66 Aligned_cols=64 Identities=9% Similarity=0.079 Sum_probs=0.0
Q ss_pred CCceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEcCCCcChhHHHHHHHHhcCCcEEEEeCCcccccc
Q 039983 10 RFKRVCVFCGSSPDYKYCYRKAAVDLGNELVSRGLDLVYGGGSVGLMGLISEEVHRGGRHVLGIIPKALMKKE 82 (220)
Q Consensus 10 ~~~~I~Vfgss~~~~~~~~~~~A~~lG~~lA~~g~~lVtGGg~~GlM~ava~gA~~~gG~viGv~P~~~~~~e 82 (220)
..+++.|.|+++ -..+.+++.|+++|+.++.=+.. .-.....+.....+.++..+..+...+.+
T Consensus 5 ~~~~~lItG~s~--------giG~~la~~l~~~G~~Vv~~~r~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~ 68 (263)
T PRK08226 5 TGKTALITGALQ--------GIGEGIARVFARHGANLILLDIS-PEIEKLADELCGRGHRCTAVVADVRDPAS 68 (263)
T ss_pred CCCEEEEeCCCC--------hHHHHHHHHHHHCCCEEEEecCC-HHHHHHHHHHHHhCCceEEEECCCCCHHH
No 347
>PRK06182 short chain dehydrogenase; Validated
Probab=21.90 E-value=1.3e+02 Score=25.44 Aligned_cols=31 Identities=19% Similarity=0.119 Sum_probs=19.4
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEcC
Q 039983 12 KRVCVFCGSSPDYKYCYRKAAVDLGNELVSRGLDLVYGG 50 (220)
Q Consensus 12 ~~I~Vfgss~~~~~~~~~~~A~~lG~~lA~~g~~lVtGG 50 (220)
++|.|.|+++- ..+.+++.|++.|+.|+.-+
T Consensus 4 k~vlItGasgg--------iG~~la~~l~~~G~~V~~~~ 34 (273)
T PRK06182 4 KVALVTGASSG--------IGKATARRLAAQGYTVYGAA 34 (273)
T ss_pred CEEEEECCCCh--------HHHHHHHHHHHCCCEEEEEe
Confidence 46777776552 24556666777788776443
No 348
>PLN02494 adenosylhomocysteinase
Probab=21.87 E-value=3.4e+02 Score=26.19 Aligned_cols=73 Identities=15% Similarity=0.218 Sum_probs=40.1
Q ss_pred CeEEEcCCCcChhHHHHHHHHhcCCcEEEEeCCcccccccCCCCCceEeecCCHHHHHHHHHHhCCeEEEecCCcccH-H
Q 039983 44 LDLVYGGGSVGLMGLISEEVHRGGRHVLGIIPKALMKKELTGVTLGEVKPVDHMHQRKAEMARNADCFIALPGGFGTL-E 122 (220)
Q Consensus 44 ~~lVtGGg~~GlM~ava~gA~~~gG~viGv~P~~~~~~e~~~~~~~~~~~~~~~~~Rk~~~~~~sda~IvlpGG~GTL-~ 122 (220)
-.+|.|.|+.|.. +++-++..|.+|+.+-.+.....+.....+. +.++. -.+..+|.||...|..+.+ .
T Consensus 256 tVvViGyG~IGr~--vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~----vv~le----Eal~~ADVVI~tTGt~~vI~~ 325 (477)
T PLN02494 256 VAVICGYGDVGKG--CAAAMKAAGARVIVTEIDPICALQALMEGYQ----VLTLE----DVVSEADIFVTTTGNKDIIMV 325 (477)
T ss_pred EEEEECCCHHHHH--HHHHHHHCCCEEEEEeCCchhhHHHHhcCCe----eccHH----HHHhhCCEEEECCCCccchHH
Confidence 4467888887744 5566777788888773321100010011111 11332 2457899999988887765 4
Q ss_pred HHHH
Q 039983 123 ELFE 126 (220)
Q Consensus 123 El~~ 126 (220)
+.+.
T Consensus 326 e~L~ 329 (477)
T PLN02494 326 DHMR 329 (477)
T ss_pred HHHh
Confidence 4443
No 349
>KOG0503 consensus Asparaginase [Amino acid transport and metabolism]
Probab=21.87 E-value=1.4e+02 Score=27.83 Aligned_cols=37 Identities=22% Similarity=0.243 Sum_probs=27.4
Q ss_pred HhCCeEEEecCCcccHHHHHHHHHHHHhccCCCcEEEEcC
Q 039983 106 RNADCFIALPGGFGTLEELFEVTTWSQLGIHNKPVGLINV 145 (220)
Q Consensus 106 ~~sda~IvlpGG~GTL~El~~~~t~~qlg~~~kPIill~~ 145 (220)
+..|.|||+-| .-||+|.+..+.++-= . -|||++.+.
T Consensus 120 ~~~~G~VV~HG-TDTLe~tAffls~~~~-t-~KPIVitGa 156 (368)
T KOG0503|consen 120 KSYDGIVVTHG-TDTLEETAFFLSFTIN-T-LKPIVITGA 156 (368)
T ss_pred cccCcEEEEcC-cchHHHHHHHHHHHHh-c-CCcEEEecc
Confidence 34789999875 8999999888775432 2 299999753
No 350
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=21.86 E-value=6.4e+02 Score=23.33 Aligned_cols=97 Identities=14% Similarity=0.020 Sum_probs=54.1
Q ss_pred HHHHHHHHHHCCCeEEE---cCCC-----------cChhHHHHHHHHhcCCcEEEEeCCcc-cccccC-----CCCCceE
Q 039983 32 AVDLGNELVSRGLDLVY---GGGS-----------VGLMGLISEEVHRGGRHVLGIIPKAL-MKKELT-----GVTLGEV 91 (220)
Q Consensus 32 A~~lG~~lA~~g~~lVt---GGg~-----------~GlM~ava~gA~~~gG~viGv~P~~~-~~~e~~-----~~~~~~~ 91 (220)
..++.+.-.+.|..+|- -=|+ .=+..-+++-|.+.|..+|=+-+... ...+.. .....+.
T Consensus 181 l~~i~~ea~~~GlPlv~~~YpRG~~i~~~~d~~~~~d~Ia~AaRiaaELGADIVKv~yp~~~~~f~~v~~~~~~~~~~~~ 260 (348)
T PRK09250 181 ISEAFEEAHELGLATVLWSYLRNSAFKKDGDYHTAADLTGQANHLAATIGADIIKQKLPTNNGGYKAINFGKTDDRVYSK 260 (348)
T ss_pred HHHHHHHHHHhCCCEEEEecccCcccCCcccccccHHHHHHHHHHHHHHcCCEEEecCCCChhhHHHhhccccccccccc
Confidence 33444445567888764 1121 02666778888889999888843211 111110 1111223
Q ss_pred eecCCHHHHHHHHHHhC---CeEEEecCCcc-cHHHHHHHH
Q 039983 92 KPVDHMHQRKAEMARNA---DCFIALPGGFG-TLEELFEVT 128 (220)
Q Consensus 92 ~~~~~~~~Rk~~~~~~s---da~IvlpGG~G-TL~El~~~~ 128 (220)
+..++..+|-+..++.| ..-|++-||-= +.+|+++..
T Consensus 261 ~~~~~~~~~~~~~V~ac~ag~vpVviAGG~k~~~~e~L~~v 301 (348)
T PRK09250 261 LTSDHPIDLVRYQVANCYMGRRGLINSGGASKGEDDLLDAV 301 (348)
T ss_pred ccccchHHHHHHHHHhhccCCceEEEeCCCCCCHHHHHHHH
Confidence 44577788999888887 55555555544 555555443
No 351
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=21.81 E-value=1.1e+02 Score=25.12 Aligned_cols=25 Identities=36% Similarity=0.490 Sum_probs=14.1
Q ss_pred EEcCCCcChhHHHHHHHHhcCCcEEEE
Q 039983 47 VYGGGSVGLMGLISEEVHRGGRHVLGI 73 (220)
Q Consensus 47 VtGGg~~GlM~ava~gA~~~gG~viGv 73 (220)
|.|-|..|+.-|++-+ +.|-+|+|+
T Consensus 5 ViGlGyvGl~~A~~lA--~~G~~V~g~ 29 (185)
T PF03721_consen 5 VIGLGYVGLPLAAALA--EKGHQVIGV 29 (185)
T ss_dssp EE--STTHHHHHHHHH--HTTSEEEEE
T ss_pred EECCCcchHHHHHHHH--hCCCEEEEE
Confidence 4566666666665433 456677777
No 352
>PRK10537 voltage-gated potassium channel; Provisional
Probab=21.79 E-value=6.6e+02 Score=23.40 Aligned_cols=94 Identities=15% Similarity=0.106 Sum_probs=50.6
Q ss_pred CCCeEEEcCCCcChhHHHHHHHHhcCCcEEEEeCCcccccccCCCCCceEeec--CCHHHHHHHHHHhCCeEEEecCCcc
Q 039983 42 RGLDLVYGGGSVGLMGLISEEVHRGGRHVLGIIPKALMKKELTGVTLGEVKPV--DHMHQRKAEMARNADCFIALPGGFG 119 (220)
Q Consensus 42 ~g~~lVtGGg~~GlM~ava~gA~~~gG~viGv~P~~~~~~e~~~~~~~~~~~~--~~~~~Rk~~~~~~sda~IvlpGG~G 119 (220)
++|.+|+|.|+.| ..+.+.-.+.|-.++-|-++.. .+...+.+ +.+.. ++...=++.-++.++++|++..--
T Consensus 240 k~HvII~G~g~lg--~~v~~~L~~~g~~vvVId~d~~--~~~~~~g~-~vI~GD~td~e~L~~AgI~~A~aVI~~t~dD- 313 (393)
T PRK10537 240 KDHFIICGHSPLA--INTYLGLRQRGQAVTVIVPLGL--EHRLPDDA-DLIPGDSSDSAVLKKAGAARARAILALRDND- 313 (393)
T ss_pred CCeEEEECCChHH--HHHHHHHHHCCCCEEEEECchh--hhhccCCC-cEEEeCCCCHHHHHhcCcccCCEEEEcCCCh-
Confidence 6899999998844 3466665666777777755421 11111121 23322 233333334466889999987642
Q ss_pred cHHHHHHHHHHHHhccCCCcEEEE
Q 039983 120 TLEELFEVTTWSQLGIHNKPVGLI 143 (220)
Q Consensus 120 TL~El~~~~t~~qlg~~~kPIill 143 (220)
-+-++-+++.++++. +.+++..
T Consensus 314 -~~Nl~ivL~ar~l~p-~~kIIa~ 335 (393)
T PRK10537 314 -ADNAFVVLAAKEMSS-DVKTVAA 335 (393)
T ss_pred -HHHHHHHHHHHHhCC-CCcEEEE
Confidence 222344455555543 3456554
No 353
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=21.79 E-value=2.4e+02 Score=26.18 Aligned_cols=53 Identities=13% Similarity=0.242 Sum_probs=37.5
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCeEEEcCCC---cChhHHHHHHHHhcCC-cEEEEeC
Q 039983 23 DYKYCYRKAAVDLGNELVSRGLDLVYGGGS---VGLMGLISEEVHRGGR-HVLGIIP 75 (220)
Q Consensus 23 ~~~~~~~~~A~~lG~~lA~~g~~lVtGGg~---~GlM~ava~gA~~~gG-~viGv~P 75 (220)
+-.+.+.+.-+.+-..++++|..||+++|. .|+.+++.+-|.+.|- .-|+++-
T Consensus 51 gY~~~~~~~L~~~L~~~~~~gIkvI~NaGg~np~~~a~~v~eia~e~Gl~lkvA~V~ 107 (362)
T PF07287_consen 51 GYAPDFVRDLRPLLPAAAEKGIKVITNAGGLNPAGCADIVREIARELGLSLKVAVVY 107 (362)
T ss_pred CchHHHHHHHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHHHHHhcCCCeeEEEEE
Confidence 456778888888889999999999998875 3455555555666553 3456553
No 354
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=21.74 E-value=4.7e+02 Score=21.89 Aligned_cols=40 Identities=20% Similarity=0.306 Sum_probs=25.5
Q ss_pred HHHHHHHHhCCeEEEecC--CcccHHHHHHHHHHHHhccCCCcEEEEcCC
Q 039983 99 QRKAEMARNADCFIALPG--GFGTLEELFEVTTWSQLGIHNKPVGLINVE 146 (220)
Q Consensus 99 ~Rk~~~~~~sda~IvlpG--G~GTL~El~~~~t~~qlg~~~kPIill~~~ 146 (220)
+.-..+...||++|.... +.|+- ++|++. .++||+..+..
T Consensus 270 ~~~~~~~~~ad~~l~~s~~e~~~~~--~~Ea~~------~g~PvI~~~~~ 311 (374)
T cd03817 270 EELPDYYKAADLFVFASTTETQGLV--LLEAMA------AGLPVVAVDAP 311 (374)
T ss_pred HHHHHHHHHcCEEEecccccCcChH--HHHHHH------cCCcEEEeCCC
Confidence 344566778999775532 33332 566665 58999988753
No 355
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=21.73 E-value=3e+02 Score=22.54 Aligned_cols=35 Identities=23% Similarity=0.590 Sum_probs=20.8
Q ss_pred CCeEEEcCCCcC---hhHHHHHHHHhcCCcEEEEeCCc
Q 039983 43 GLDLVYGGGSVG---LMGLISEEVHRGGRHVLGIIPKA 77 (220)
Q Consensus 43 g~~lVtGGg~~G---lM~ava~gA~~~gG~viGv~P~~ 77 (220)
.+.+|+|..++| +|.++.+...+.|.+|+++.|..
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~ 56 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTN 56 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSH
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcH
Confidence 366666665545 56666666666677777777653
No 356
>smart00516 SEC14 Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p). Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and the RasGAP, neurofibromin (NF1). Lipid-binding domain. The SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=21.71 E-value=2.5e+02 Score=21.23 Aligned_cols=65 Identities=20% Similarity=0.201 Sum_probs=41.3
Q ss_pred cHHHHHHHHHHHHhcc--CCCcEEEEcCCCCchhHHHHHHHHHHcCCCCccccCcEEEcCC--HHHHHHHHHhh
Q 039983 120 TLEELFEVTTWSQLGI--HNKPVGLINVEGYYDPILNFIDKSIDEGFIYPSQRSIIVSASN--AKELVQKLEDY 189 (220)
Q Consensus 120 TL~El~~~~t~~qlg~--~~kPIill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~d--~ee~~~~l~~~ 189 (220)
+++-+-.++...|... .-+-+.++|...+++.++..+.. |++++..+.+.+.++ .+++.+++...
T Consensus 79 ~~~~lk~~~~~~~~~yp~~l~~i~ivn~p~~~~~~~~~~~~-----~l~~~~~~ki~~~~~~~~~~L~~~i~~~ 147 (158)
T smart00516 79 DLSVLRKILKILQDHYPERLGKVLIINPPWFFRVLWKIIKP-----FLDEKTREKIRFVGNDSKEELLEYIDPE 147 (158)
T ss_pred cHHHHHHHHHHHHHHhHHHhCeEEEECCCHHHHHHHHHHHh-----hcChhhhccEEEeCCCCHHHHHhhCCHh
Confidence 3554544444444332 24788999987666666665544 566666777888887 77777776443
No 357
>PRK08177 short chain dehydrogenase; Provisional
Probab=21.68 E-value=1.7e+02 Score=23.78 Aligned_cols=31 Identities=16% Similarity=0.231 Sum_probs=19.9
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEcC
Q 039983 12 KRVCVFCGSSPDYKYCYRKAAVDLGNELVSRGLDLVYGG 50 (220)
Q Consensus 12 ~~I~Vfgss~~~~~~~~~~~A~~lG~~lA~~g~~lVtGG 50 (220)
++|-|.|+++. ..+.+++.|+++|+.|+.-+
T Consensus 2 k~vlItG~sg~--------iG~~la~~l~~~G~~V~~~~ 32 (225)
T PRK08177 2 RTALIIGASRG--------LGLGLVDRLLERGWQVTATV 32 (225)
T ss_pred CEEEEeCCCch--------HHHHHHHHHHhCCCEEEEEe
Confidence 56777787652 34566677777788776433
No 358
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=21.65 E-value=3.1e+02 Score=23.68 Aligned_cols=68 Identities=18% Similarity=0.277 Sum_probs=39.6
Q ss_pred HHHHHhCCeEEEec--CCcccHHHHHHHHHHHHhccCCCcEEEEcCCCCchhHHHHHHHHHHcCCCCccccCcEEEcCCH
Q 039983 102 AEMARNADCFIALP--GGFGTLEELFEVTTWSQLGIHNKPVGLINVEGYYDPILNFIDKSIDEGFIYPSQRSIIVSASNA 179 (220)
Q Consensus 102 ~~~~~~sda~Ivlp--GG~GTL~El~~~~t~~qlg~~~kPIill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~d~ 179 (220)
.-+...||++|.-. .|+|.- +.|++. .++|||.-+..+. ..++ .+.....++-.+|+
T Consensus 265 ~~~~~~~d~~v~ps~~E~~~~~--~~EAma------~g~PvI~s~~~~~-~e~i------------~~~~~G~~~~~~~~ 323 (371)
T cd04962 265 EELLSIADLFLLPSEKESFGLA--ALEAMA------CGVPVVASNAGGI-PEVV------------KHGETGFLVDVGDV 323 (371)
T ss_pred HHHHHhcCEEEeCCCcCCCccH--HHHHHH------cCCCEEEeCCCCc-hhhh------------cCCCceEEcCCCCH
Confidence 35567899987653 455533 566675 5899999876443 2211 11112233334578
Q ss_pred HHHHHHHHhhc
Q 039983 180 KELVQKLEDYV 190 (220)
Q Consensus 180 ee~~~~l~~~~ 190 (220)
+++.+.+.+..
T Consensus 324 ~~l~~~i~~l~ 334 (371)
T cd04962 324 EAMAEYALSLL 334 (371)
T ss_pred HHHHHHHHHHH
Confidence 88888777654
No 359
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=21.56 E-value=2.3e+02 Score=25.34 Aligned_cols=58 Identities=19% Similarity=0.231 Sum_probs=38.3
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHH----CCCeEEEcCCCcChhHHHHHHHHhcC--CcEEEEeCC
Q 039983 18 CGSSPDYKYCYRKAAVDLGNELVS----RGLDLVYGGGSVGLMGLISEEVHRGG--RHVLGIIPK 76 (220)
Q Consensus 18 gss~~~~~~~~~~~A~~lG~~lA~----~g~~lVtGGg~~GlM~ava~gA~~~g--G~viGv~P~ 76 (220)
+++.+-+...++..+.++.+.+.. -++.++.-|++ |..-.++++.++.+ -++|||-|.
T Consensus 156 ~~~~~~~~~g~~~~~~Ei~~q~~~~~~~~d~vv~~vGtG-gt~~Gi~~~~k~~~~~~~vigVe~~ 219 (331)
T PRK03910 156 GGSNALGALGYVACALEIAQQLAEGGVDFDAVVVASGSG-GTHAGLAAGLAALGPDIPVIGVTVS 219 (331)
T ss_pred CCCCchhHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCcH-HHHHHHHHHHHHhCCCCeEEEEEec
Confidence 444444444555577788887763 35556655555 88888888888754 578999764
No 360
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=21.55 E-value=1.8e+02 Score=25.94 Aligned_cols=38 Identities=32% Similarity=0.382 Sum_probs=24.9
Q ss_pred hCCeEEEecCCcccHHHHHHHHHHHHhccCCCcEEEEcC--CCCch
Q 039983 107 NADCFIALPGGFGTLEELFEVTTWSQLGIHNKPVGLINV--EGYYD 150 (220)
Q Consensus 107 ~sda~IvlpGG~GTL~El~~~~t~~qlg~~~kPIill~~--~g~~~ 150 (220)
..| +|+.-||=||+-+.+..+. ..++||+-+|. -||..
T Consensus 62 ~~d-~vi~~GGDGt~l~~~~~~~-----~~~~Pvlgin~G~lGFl~ 101 (295)
T PRK01231 62 VCD-LVIVVGGDGSLLGAARALA-----RHNVPVLGINRGRLGFLT 101 (295)
T ss_pred CCC-EEEEEeCcHHHHHHHHHhc-----CCCCCEEEEeCCcccccc
Confidence 345 4555688999988765542 35789988875 24544
No 361
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=21.54 E-value=5.6e+02 Score=22.51 Aligned_cols=49 Identities=24% Similarity=0.306 Sum_probs=30.6
Q ss_pred ecCCHHHHHHHHHHhCCeEEEecCCccc-------HHHHHHHHHHHHhccCCCcEEE
Q 039983 93 PVDHMHQRKAEMARNADCFIALPGGFGT-------LEELFEVTTWSQLGIHNKPVGL 142 (220)
Q Consensus 93 ~~~~~~~Rk~~~~~~sda~IvlpGG~GT-------L~El~~~~t~~qlg~~~kPIil 142 (220)
...+-.+|-..+.+.|+.||-+..-.|+ .+++.+.+...+-. .++||++
T Consensus 148 ~p~t~~~Ri~~i~~~a~gFiY~vs~~GvTG~~~~~~~~l~~~i~~ik~~-~~~Pv~v 203 (259)
T PF00290_consen 148 APTTPEERIKKIAKQASGFIYLVSRMGVTGSRTELPDELKEFIKRIKKH-TDLPVAV 203 (259)
T ss_dssp ETTS-HHHHHHHHHH-SSEEEEESSSSSSSTTSSCHHHHHHHHHHHHHT-TSS-EEE
T ss_pred CCCCCHHHHHHHHHhCCcEEEeeccCCCCCCcccchHHHHHHHHHHHhh-cCcceEE
Confidence 3457789999999999999998655554 34455444433322 2789876
No 362
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=21.54 E-value=1.9e+02 Score=24.08 Aligned_cols=38 Identities=18% Similarity=0.176 Sum_probs=22.7
Q ss_pred HHHHhCCeEEEecCCcccHHHHHHHHHHHHhccCCCcEEEEcC
Q 039983 103 EMARNADCFIALPGGFGTLEELFEVTTWSQLGIHNKPVGLINV 145 (220)
Q Consensus 103 ~~~~~sda~IvlpGG~GTL~El~~~~t~~qlg~~~kPIill~~ 145 (220)
++....|++|+.|......++....+ ...+.||++++.
T Consensus 51 l~~~~vdgiIi~~~~~~~~~~~i~~~-----~~~~iPvV~~~~ 88 (273)
T cd06309 51 FIAQGVDVIILAPVVETGWDPVLKEA-----KAAGIPVILVDR 88 (273)
T ss_pred HHHcCCCEEEEcCCccccchHHHHHH-----HHCCCCEEEEec
Confidence 44456899998876543333433222 234688888874
No 363
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=21.48 E-value=2.2e+02 Score=25.32 Aligned_cols=52 Identities=29% Similarity=0.305 Sum_probs=31.3
Q ss_pred hCCeEEEecCCcccHHHHHHHHHHHHhccCCCcEEEEcC--CCCc-----hhHHHHHHHHHHcCC
Q 039983 107 NADCFIALPGGFGTLEELFEVTTWSQLGIHNKPVGLINV--EGYY-----DPILNFIDKSIDEGF 164 (220)
Q Consensus 107 ~sda~IvlpGG~GTL~El~~~~t~~qlg~~~kPIill~~--~g~~-----~~l~~~l~~~~~~g~ 164 (220)
.+|.+|+ -||=||+--.+.. +...++||+=+|. -||. +.+.+.|+.+.+..|
T Consensus 64 ~~Dlvi~-iGGDGT~L~aa~~-----~~~~~~PilGIN~G~lGFLt~~~~~~~~~~l~~i~~g~y 122 (287)
T PRK14077 64 ISDFLIS-LGGDGTLISLCRK-----AAEYDKFVLGIHAGHLGFLTDITVDEAEKFFQAFFQGEF 122 (287)
T ss_pred CCCEEEE-ECCCHHHHHHHHH-----hcCCCCcEEEEeCCCcccCCcCCHHHHHHHHHHHHcCCC
Confidence 4566555 4779997543332 2345799988875 3566 455566666554443
No 364
>PLN02970 serine racemase
Probab=21.31 E-value=1.9e+02 Score=25.95 Aligned_cols=46 Identities=17% Similarity=0.203 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHCCCeEEEcCCCcChhHHHHHHHHhcCC--cEEEEeCC
Q 039983 30 KAAVDLGNELVSRGLDLVYGGGSVGLMGLISEEVHRGGR--HVLGIIPK 76 (220)
Q Consensus 30 ~~A~~lG~~lA~~g~~lVtGGg~~GlM~ava~gA~~~gG--~viGv~P~ 76 (220)
..+.|+-+.+.+-++.++..|+. |+...++++.++.+- ++|||=|.
T Consensus 164 t~g~Ei~~ql~~~D~vv~~vG~G-G~~~Gi~~~lk~~~~~~kvi~Vep~ 211 (328)
T PLN02970 164 TIALEFLEQVPELDVIIVPISGG-GLISGIALAAKAIKPSIKIIAAEPK 211 (328)
T ss_pred HHHHHHHHhccCCCEEEEeeCch-HHHHHHHHHHHhcCCCCEEEEEEEC
Confidence 34556665555446777777776 999999999988664 78999764
No 365
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=21.28 E-value=5.3e+02 Score=24.92 Aligned_cols=86 Identities=14% Similarity=0.055 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHCCCe-EEEcCCCc--ChhHHHHHHHHhcCCcEEEEeCCc--ccccccCCCCCceEeecCCHHHHHHHHH
Q 039983 31 AAVDLGNELVSRGLD-LVYGGGSV--GLMGLISEEVHRGGRHVLGIIPKA--LMKKELTGVTLGEVKPVDHMHQRKAEMA 105 (220)
Q Consensus 31 ~A~~lG~~lA~~g~~-lVtGGg~~--GlM~ava~gA~~~gG~viGv~P~~--~~~~e~~~~~~~~~~~~~~~~~Rk~~~~ 105 (220)
...++.+.|.+.... |+.|+|-. |..+++.+=|-..|-.|+-- +.. ..|.+ |+.+.-.+=...-...+ ..+
T Consensus 195 ~i~~~~~~L~~A~rPvil~G~g~~~~~a~~~l~~lae~~~~pv~tt-~~gkg~~~~~--hp~~~G~~G~~~~~~~~-~~~ 270 (572)
T PRK08979 195 QIKRGLQALLAAKKPVLYVGGGAIISGADKQILQLAEKLNLPVVST-LMGLGAFPGT--HKNSLGMLGMHGRYEAN-MAM 270 (572)
T ss_pred HHHHHHHHHHhCCCCEEEECCCccccChHHHHHHHHHHhCCCEEEc-ccccccCCCC--CcccccCCccCCCHHHH-HHH
Confidence 345556666665544 45565542 77777777666677776631 111 11111 22111111001112223 355
Q ss_pred HhCCeEEEecCCccc
Q 039983 106 RNADCFIALPGGFGT 120 (220)
Q Consensus 106 ~~sda~IvlpGG~GT 120 (220)
+.||.+|+++-.++.
T Consensus 271 ~~aD~vl~vG~~~~~ 285 (572)
T PRK08979 271 HNADLIFGIGVRFDD 285 (572)
T ss_pred HhCCEEEEEcCCCCc
Confidence 789999999866443
No 366
>PRK00625 shikimate kinase; Provisional
Probab=21.26 E-value=3.1e+02 Score=22.28 Aligned_cols=78 Identities=21% Similarity=0.116 Sum_probs=40.3
Q ss_pred HHHHHHHHCCCeEEEcCCCcChhHHHHHHHHhcCCcEEEEeCC--cccccccCCCCCc----eE-eecCCHHHHHHHHHH
Q 039983 34 DLGNELVSRGLDLVYGGGSVGLMGLISEEVHRGGRHVLGIIPK--ALMKKELTGVTLG----EV-KPVDHMHQRKAEMAR 106 (220)
Q Consensus 34 ~lG~~lA~~g~~lVtGGg~~GlM~ava~gA~~~gG~viGv~P~--~~~~~e~~~~~~~----~~-~~~~~~~~Rk~~~~~ 106 (220)
++-+.+...+..+.+|||. ++..-+...+..+|.||-+-.. ....+ ....++. .. .+..-+..|....-+
T Consensus 65 ~~l~~l~~~~~VIs~GGg~--~~~~e~~~~l~~~~~Vv~L~~~~e~l~~R-l~~R~~~~~~~~~~~~~~ll~~R~~~Y~~ 141 (173)
T PRK00625 65 LALTSLPVIPSIVALGGGT--LMIEPSYAHIRNRGLLVLLSLPIATIYQR-LQKRGLPERLKHAPSLEEILSQRIDRMRS 141 (173)
T ss_pred HHHHHhccCCeEEECCCCc--cCCHHHHHHHhcCCEEEEEECCHHHHHHH-HhcCCCCcccCcHHHHHHHHHHHHHHHHH
Confidence 3344454556666688776 4555555567778887776322 11111 0011110 00 112234788888777
Q ss_pred hCCeEEEe
Q 039983 107 NADCFIAL 114 (220)
Q Consensus 107 ~sda~Ivl 114 (220)
.||..|-.
T Consensus 142 ~ad~~i~~ 149 (173)
T PRK00625 142 IADYIFSL 149 (173)
T ss_pred HCCEEEeC
Confidence 78887643
No 367
>TIGR00060 L18_bact ribosomal protein L18, bacterial type. The archaeal and eukaryotic type rpL18 is not detectable under this model.
Probab=21.24 E-value=3.9e+02 Score=20.59 Aligned_cols=40 Identities=25% Similarity=0.488 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHH----CCCeEE-E--cCCC-cChhHHHHHHHHhcCC
Q 039983 29 RKAAVDLGNELVS----RGLDLV-Y--GGGS-VGLMGLISEEVHRGGR 68 (220)
Q Consensus 29 ~~~A~~lG~~lA~----~g~~lV-t--GGg~-~GlM~ava~gA~~~gG 68 (220)
.+.|..+|+.||+ .|+.-| + ||.. -|-+.|++++|.++|-
T Consensus 65 ~~aA~~vG~~la~ra~~~gi~~vvfDrgg~~YhGrv~A~a~~aRe~Gl 112 (114)
T TIGR00060 65 KDAAKKVGKLVAERLKEKGIKDVVFDRGGYKYHGRVAALAEAAREAGL 112 (114)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEeCCCCcchHHHHHHHHHHHHhCC
Confidence 5677888888776 465433 2 4433 4899999999999873
No 368
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=21.18 E-value=2e+02 Score=23.46 Aligned_cols=31 Identities=16% Similarity=0.151 Sum_probs=0.0
Q ss_pred CCceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEE
Q 039983 10 RFKRVCVFCGSSPDYKYCYRKAAVDLGNELVSRGLDLVY 48 (220)
Q Consensus 10 ~~~~I~Vfgss~~~~~~~~~~~A~~lG~~lA~~g~~lVt 48 (220)
.+++|.|.|+++ ...+.+++.|+++|+.++.
T Consensus 1 ~~k~vlItG~s~--------~iG~~la~~l~~~g~~vi~ 31 (245)
T PRK12824 1 MKKIALVTGAKR--------GIGSAIARELLNDGYRVIA 31 (245)
T ss_pred CCCEEEEeCCCc--------hHHHHHHHHHHHcCCEEEE
No 369
>PF02502 LacAB_rpiB: Ribose/Galactose Isomerase; InterPro: IPR003500 This entry represents the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB). Galactose-6-phosphate isomerase (5.3.1.26 from EC) is a heteromultimeric protein consisting of subunits LacA and LacB, and catalyses the conversion of D-galactose 6-phosphate to D-tagatose and 6-phosphate in the tagatose 6-phosphate pathway of lactose catabolism []. Galactose-6-phosphate isomerase is induced by galactose or lactose. This entry represents the LacB subunit. Ribose 5-phosphate isomerase (5.3.1.6 from EC) forms a homodimer and catalyses the interconversion of D-ribose 5-phosphate and D-ribulose 5-phosphate in the non-oxidative branch of the pentose phosphate pathway. This reaction permits the synthesis of ribose from other sugars, as well as the recycling of sugars from nucleotide breakdown. Two unrelated enzymes can catalyse this reaction: RpiA (found in most organisms) and RpiB (found in some bacteria and eukaryotes). RpiB is also involved in metabolism of the rare sugar, allose, in addition to ribose sugars. The structures of RpiA and RpiB are distinct, RpiB having a Rossmann-type alpha/beta/alpha sandwich topology [].; GO: 0005975 carbohydrate metabolic process; PDB: 3HEE_A 3HE8_A 3PH3_B 3PH4_B 3ONO_A 4EM8_B 3S5P_B 1O1X_A 2BES_D 2VVP_D ....
Probab=21.17 E-value=1.8e+02 Score=23.14 Aligned_cols=47 Identities=26% Similarity=0.282 Sum_probs=30.4
Q ss_pred eEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCe---EEEcCCCcChhHHHHH
Q 039983 13 RVCVFCGSSPDYKYCYRKAAVDLGNELVSRGLD---LVYGGGSVGLMGLISE 61 (220)
Q Consensus 13 ~I~Vfgss~~~~~~~~~~~A~~lG~~lA~~g~~---lVtGGg~~GlM~ava~ 61 (220)
.|.=+|..... ...|-+.|..+++.+++.... ++||-|- |++=++|+
T Consensus 27 eV~D~G~~~~~-~~dy~~~a~~va~~V~~~~~d~GIliCgtGi-G~~iaANK 76 (140)
T PF02502_consen 27 EVIDFGTYSED-SVDYPDFAEKVAEAVASGEADRGILICGTGI-GMSIAANK 76 (140)
T ss_dssp EEEEESESSTS-T--HHHHHHHHHHHHHTTSSSEEEEEESSSH-HHHHHHHT
T ss_pred EEEEeCCCCCC-CCCHHHHHHHHHHHHHcccCCeEEEEcCCCh-hhhhHhhc
Confidence 45566655543 678889999999999876432 5566665 77766543
No 370
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=21.17 E-value=2.9e+02 Score=20.93 Aligned_cols=62 Identities=21% Similarity=0.329 Sum_probs=30.6
Q ss_pred CeEEEecCCcccHHHH---HHHHHHH-HhccCCCcEEEEcCCCCchhHHHHHHHHHHcCCCCccccCcEEEcCCHHHH
Q 039983 109 DCFIALPGGFGTLEEL---FEVTTWS-QLGIHNKPVGLINVEGYYDPILNFIDKSIDEGFIYPSQRSIIVSASNAKEL 182 (220)
Q Consensus 109 da~IvlpGG~GTL~El---~~~~t~~-qlg~~~kPIill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~d~ee~ 182 (220)
|+ |++|||.+....+ -....|. +...+.|||..+-..-+ + +.+.|.+.. + .-++..++++++
T Consensus 64 D~-liVpGg~~~~~~~~~~~~l~~~l~~~~~~~~~I~aic~G~~---~------La~aGll~~-~-~gv~~~~~~~~~ 129 (142)
T cd03132 64 DA-VVVPGGAEAAFALAPSGRALHFVTEAFKHGKPIGAVGEGSD---L------LEAAGIPLE-D-PGVVTADDVKDV 129 (142)
T ss_pred CE-EEECCCccCHHHHccChHHHHHHHHHHhcCCeEEEcCchHH---H------HHHcCCCCC-C-CcEEEecCcchH
Confidence 55 5567887765421 1122222 23356899987754211 1 233455432 2 445556566664
No 371
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=21.06 E-value=3.4e+02 Score=24.70 Aligned_cols=55 Identities=22% Similarity=0.243 Sum_probs=35.0
Q ss_pred EEEcCCCCCC--CHHHHHHHHHHHHHHHHCCCe-EEEcCCCcChhHHHHHHHHh---c--CCcEEEE
Q 039983 15 CVFCGSSPDY--KYCYRKAAVDLGNELVSRGLD-LVYGGGSVGLMGLISEEVHR---G--GRHVLGI 73 (220)
Q Consensus 15 ~Vfgss~~~~--~~~~~~~A~~lG~~lA~~g~~-lVtGGg~~GlM~ava~gA~~---~--gG~viGv 73 (220)
++.|+||... +++.+ +++.+.|.+.+.. |++=||. |-|..+++=+.. . +-.||||
T Consensus 65 s~LgtsR~~~~~~~~~~---~~~~~~l~~~~I~~Lv~IGGd-~s~~~a~~L~e~~~~~~~~i~vigi 127 (338)
T cd00363 65 TIIGSARCKEFRTEEGR---AKAAENLKKHGIDALVVIGGD-GSYTGADLLTEEWPSKYQGFNVIGL 127 (338)
T ss_pred eecccCCCCccCCHHHH---HHHHHHHHHhCCCEEEEeCCH-HHHHHHHHHHHHHHhcCCCccEEEe
Confidence 5778887543 33323 4566777777665 5566777 999887664443 1 5678888
No 372
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=21.05 E-value=1.6e+02 Score=29.91 Aligned_cols=38 Identities=13% Similarity=0.107 Sum_probs=26.2
Q ss_pred CCceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEE
Q 039983 10 RFKRVCVFCGSSPDYKYCYRKAAVDLGNELVSRGLDLV 47 (220)
Q Consensus 10 ~~~~I~Vfgss~~~~~~~~~~~A~~lG~~lA~~g~~lV 47 (220)
++++|+|.+|......+.-...|+.+.+.|-+.||.++
T Consensus 450 ~~~~i~vl~GG~S~E~~vSl~s~~~v~~al~~~~~~v~ 487 (809)
T PRK14573 450 KKLSLGLVCGGKSCEHDISLLSAKNIAKYLSPEFYDVS 487 (809)
T ss_pred CCcEEEEEECCCCCchHHHHHhHHHHHHhhcccCcEEE
Confidence 34566666654444466666788888888888888775
No 373
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=21.01 E-value=2.4e+02 Score=23.45 Aligned_cols=38 Identities=16% Similarity=0.144 Sum_probs=23.0
Q ss_pred HHHHhCCeEEEecCCcccHHHHHHHHHHHHhccCCCcEEEEcC
Q 039983 103 EMARNADCFIALPGGFGTLEELFEVTTWSQLGIHNKPVGLINV 145 (220)
Q Consensus 103 ~~~~~sda~IvlpGG~GTL~El~~~~t~~qlg~~~kPIill~~ 145 (220)
++....|++|+.|.....+.+....+. ..++||++++.
T Consensus 56 l~~~~vDgiii~~~~~~~~~~~i~~~~-----~~gIpvV~~d~ 93 (274)
T cd06311 56 LINRKIDALVILPFESAPLTQPVAKAK-----KAGIFVVVVDR 93 (274)
T ss_pred HHHcCCCEEEEeCCCchhhHHHHHHHH-----HCCCeEEEEcC
Confidence 333468999998865444444433331 24688888863
No 374
>cd02115 AAK Amino Acid Kinases (AAK) superfamily, catalytic domain; present in such enzymes like N-acetylglutamate kinase (NAGK), carbamate kinase (CK), aspartokinase (AK), glutamate-5-kinase (G5K) and UMP kinase (UMPK). The AAK superfamily includes kinases that phosphorylate a variety of amino acid substrates. These kinases catalyze the formation of phosphoric anhydrides, generally with a carboxylate, and use ATP as the source of the phosphoryl group; are involved in amino acid biosynthesis. Some of these kinases control the process via allosteric feed-back inhibition.
Probab=20.99 E-value=1.8e+02 Score=24.31 Aligned_cols=37 Identities=30% Similarity=0.244 Sum_probs=21.6
Q ss_pred EcCCCCCCCHHHHHHHHHHHHHHHHC--CCeEEEcCCCcCh
Q 039983 17 FCGSSPDYKYCYRKAAVDLGNELVSR--GLDLVYGGGSVGL 55 (220)
Q Consensus 17 fgss~~~~~~~~~~~A~~lG~~lA~~--g~~lVtGGg~~Gl 55 (220)
||||.....+.+.+.++.+.++. +. ...||.|||+ +.
T Consensus 4 iGGs~l~~~~~~~~~~~~i~~l~-~~~~~~viV~ggg~-~~ 42 (248)
T cd02115 4 FGGSSVSSEERLRNLARILVKLA-SEGGRVVVVHGAGP-QI 42 (248)
T ss_pred eCccccCCHHHHHHHHHHHHHHH-hcCCCEEEEECCCC-Cc
Confidence 78887653344544444444432 23 4568899987 55
No 375
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=20.87 E-value=6.6e+02 Score=23.07 Aligned_cols=33 Identities=36% Similarity=0.303 Sum_probs=22.4
Q ss_pred HHHHHhCCeEEEecCCcccHHHHHHHHHHHHhccCCCcEEEEcC
Q 039983 102 AEMARNADCFIALPGGFGTLEELFEVTTWSQLGIHNKPVGLINV 145 (220)
Q Consensus 102 ~~~~~~sda~IvlpGG~GTL~El~~~~t~~qlg~~~kPIill~~ 145 (220)
...+..||++|.-.| .-| .|+ .. .++|+|++-.
T Consensus 291 ~~~l~~ADlvI~rSG-t~T-~E~---a~------lg~P~Ilip~ 323 (396)
T TIGR03492 291 AEILHWADLGIAMAG-TAT-EQA---VG------LGKPVIQLPG 323 (396)
T ss_pred HHHHHhCCEEEECcC-HHH-HHH---HH------hCCCEEEEeC
Confidence 456689999998866 233 342 32 4899999863
No 376
>PF03975 CheD: CheD chemotactic sensory transduction; InterPro: IPR005659 CheD deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs). CheD-mediated MCP deamidation is required for productive communication of the conformational signals of the chemoreceptors to the cheA kinase []. CheC is a CheY-P phosphatase (CheY controls flagellar rotation and is activated by phosphorylation). The activity of CheC is enhanced by its interaction with CheD, forming a CheC-CheD heterodimer. It is suggested that CheC exerts its effect on MCP methylation in Bacillus subtilis by controlling the binding of CheD to the MCPs [].; GO: 0050568 protein-glutamine glutaminase activity, 0006935 chemotaxis; PDB: 2F9Z_D.
Probab=20.86 E-value=2.7e+02 Score=20.98 Aligned_cols=41 Identities=15% Similarity=0.079 Sum_probs=20.5
Q ss_pred hcCCCceEEEEcCCCCCC------CHHHHHHHHHHHHHHHHCCCeEE
Q 039983 7 AKSRFKRVCVFCGSSPDY------KYCYRKAAVDLGNELVSRGLDLV 47 (220)
Q Consensus 7 ~~~~~~~I~Vfgss~~~~------~~~~~~~A~~lG~~lA~~g~~lV 47 (220)
+++..-.+.||||++.-. .+.-.+-.+..=+.|++.|+.|+
T Consensus 35 a~~~~l~aklfGGa~m~~~~~~~~~~IG~rNv~~a~~~L~~~gi~I~ 81 (114)
T PF03975_consen 35 ARPSRLEAKLFGGANMFPGMNSSSFNIGERNVEAARELLAEEGIPIV 81 (114)
T ss_dssp --GGG-EEEEEE----S------SS-HHHHHHHHHHHHHHHTT--EE
T ss_pred CCHHHeEEEEeeCcccccccccccCCHHHHHHHHHHHHHHHCCCcEE
Confidence 455666899999988643 23344445455556889999998
No 377
>PRK07023 short chain dehydrogenase; Provisional
Probab=20.85 E-value=1.7e+02 Score=24.11 Aligned_cols=30 Identities=20% Similarity=0.206 Sum_probs=0.0
Q ss_pred CceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEE
Q 039983 11 FKRVCVFCGSSPDYKYCYRKAAVDLGNELVSRGLDLVY 48 (220)
Q Consensus 11 ~~~I~Vfgss~~~~~~~~~~~A~~lG~~lA~~g~~lVt 48 (220)
|++|-|.|+++ -..+.+++.|+++|+.++.
T Consensus 1 ~~~vlItGasg--------giG~~ia~~l~~~G~~v~~ 30 (243)
T PRK07023 1 AVRAIVTGHSR--------GLGAALAEQLLQPGIAVLG 30 (243)
T ss_pred CceEEEecCCc--------chHHHHHHHHHhCCCEEEE
No 378
>PF09345 DUF1987: Domain of unknown function (DUF1987); InterPro: IPR018530 This family of proteins are functionally uncharacterised.
Probab=20.82 E-value=1.5e+02 Score=22.28 Aligned_cols=58 Identities=17% Similarity=0.296 Sum_probs=33.2
Q ss_pred CCCchhHHHHHHHHHHcCCCCc-cccCcEEEcCCHH----HHHHHHHhhcCCCCCcccccccccc
Q 039983 146 EGYYDPILNFIDKSIDEGFIYP-SQRSIIVSASNAK----ELVQKLEDYVPSHDGVVAKAKWEAQ 205 (220)
Q Consensus 146 ~g~~~~l~~~l~~~~~~g~i~~-~~~~~i~~~~d~e----e~~~~l~~~~~~~~~~~~~~~~~~~ 205 (220)
..||+++++||+.-.++.--+- -..++.++-.+-. ++++.|+++... +..=.++|--+
T Consensus 24 ~~Fy~Pi~~wl~~Yl~~~~~~i~~~~~L~YfNTSSsk~l~~i~~~Le~~~~~--g~~V~v~Wyyd 86 (99)
T PF09345_consen 24 FAFYQPILDWLEAYLAEPNKPITFNFKLSYFNTSSSKALMDIFDLLEDAAQK--GGKVTVNWYYD 86 (99)
T ss_pred HHHHHHHHHHHHHHHhCCCCcEEEEEEEEEEecHhHHHHHHHHHHHHHHHhc--CCcEEEEEEEC
Confidence 3599999999988665511110 1234555544433 455666666443 34447888754
No 379
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=20.76 E-value=5.6e+02 Score=22.22 Aligned_cols=63 Identities=19% Similarity=0.173 Sum_probs=38.0
Q ss_pred HHHHHHHHhCCe--EEEe-cCCcccHHHHHHHHHHHHhccCCCcEEEEcCCCCchhHHHHHHHHHHcCCCCccccCcEEE
Q 039983 99 QRKAEMARNADC--FIAL-PGGFGTLEELFEVTTWSQLGIHNKPVGLINVEGYYDPILNFIDKSIDEGFIYPSQRSIIVS 175 (220)
Q Consensus 99 ~Rk~~~~~~sda--~Ivl-pGG~GTL~El~~~~t~~qlg~~~kPIill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~ 175 (220)
+-+..|++.-.+ +|-= .|+.|+.+=+.-+.. .+.||+++.-. ....-..+
T Consensus 184 e~n~al~~~~~i~~lVtK~SG~~g~~eKi~AA~~------lgi~vivI~RP---------------------~~~~~~~~ 236 (249)
T PF02571_consen 184 ELNRALFRQYGIDVLVTKESGGSGFDEKIEAARE------LGIPVIVIKRP---------------------PEPYGDPV 236 (249)
T ss_pred HHHHHHHHHcCCCEEEEcCCCchhhHHHHHHHHH------cCCeEEEEeCC---------------------CCCCCCcc
Confidence 445555555443 3332 688888777766665 48999998521 01112233
Q ss_pred cCCHHHHHHHHHh
Q 039983 176 ASNAKELVQKLED 188 (220)
Q Consensus 176 ~~d~ee~~~~l~~ 188 (220)
++|.+|++++|++
T Consensus 237 ~~~~~e~l~~l~~ 249 (249)
T PF02571_consen 237 VETIEELLDWLEQ 249 (249)
T ss_pred cCCHHHHHHHHhC
Confidence 6888888888763
No 380
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=20.71 E-value=3.5e+02 Score=21.37 Aligned_cols=76 Identities=14% Similarity=0.187 Sum_probs=45.9
Q ss_pred HHHHHHHHHhCCeEEEecC--CcccHHHHHHHHHHHHhccCCCcEEEEcCCC-CchhHHHHHHHHHHcCCCCccccCcEE
Q 039983 98 HQRKAEMARNADCFIALPG--GFGTLEELFEVTTWSQLGIHNKPVGLINVEG-YYDPILNFIDKSIDEGFIYPSQRSIIV 174 (220)
Q Consensus 98 ~~Rk~~~~~~sda~IvlpG--G~GTL~El~~~~t~~qlg~~~kPIill~~~g-~~~~l~~~l~~~~~~g~i~~~~~~~i~ 174 (220)
......++..||++++-+= --||++++..... ..++++++++.. ++... +.+.|+ .... =.
T Consensus 53 ~~~~~~~l~~aD~viiTGsTlvN~Ti~~iL~~~~------~~~~vil~GpS~~~~P~~------l~~~Gv---~~v~-g~ 116 (147)
T PF04016_consen 53 DEDAEEILPWADVVIITGSTLVNGTIDDILELAR------NAREVILYGPSAPLHPEA------LFDYGV---TYVG-GS 116 (147)
T ss_dssp GGGHHHHGGG-SEEEEECHHCCTTTHHHHHHHTT------TSSEEEEESCCGGS-GGG------GCCTT----SEEE-EE
T ss_pred HHHHHHHHccCCEEEEEeeeeecCCHHHHHHhCc------cCCeEEEEecCchhhHHH------HHhCCC---CEEE-EE
Confidence 4566788899998887642 2489999865552 468999998753 32211 222222 0111 13
Q ss_pred EcCCHHHHHHHHHhh
Q 039983 175 SASNAKELVQKLEDY 189 (220)
Q Consensus 175 ~~~d~ee~~~~l~~~ 189 (220)
.+.|+|.+++.+++-
T Consensus 117 ~v~d~~~~~~~i~~G 131 (147)
T PF04016_consen 117 RVVDPEKVLRAISEG 131 (147)
T ss_dssp EES-HHHHHHHHCTT
T ss_pred EEeCHHHHHHHHHcC
Confidence 478999999999864
No 381
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=20.71 E-value=1.9e+02 Score=22.65 Aligned_cols=58 Identities=21% Similarity=0.145 Sum_probs=32.2
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEE------cCCCcChhHHHHHHHHhcCCcEEEEe
Q 039983 12 KRVCVFCGSSPDYKYCYRKAAVDLGNELVSRGLDLVY------GGGSVGLMGLISEEVHRGGRHVLGII 74 (220)
Q Consensus 12 ~~I~Vfgss~~~~~~~~~~~A~~lG~~lA~~g~~lVt------GGg~~GlM~ava~gA~~~gG~viGv~ 74 (220)
+.|+|.|.+..+. .-.++.|.+.|.++|+.+.+ |.......+.=..-. ++|..++.+.
T Consensus 1 pvv~VvG~~~sGK----TTl~~~Li~~l~~~g~~v~~ik~~~~g~~~~d~pG~Dt~r~-~aGA~~~~~~ 64 (140)
T PF03205_consen 1 PVVQVVGPKNSGK----TTLIRKLINELKRRGYRVAVIKHTDHGQFEIDPPGTDTWRF-KAGADVVLVS 64 (140)
T ss_dssp -EEEEEESTTSSH----HHHHHHHHHHHHHTT--EEEEEE-STTSTTCSTTCHHHHHH-HCT-SEEEEE
T ss_pred CEEEEECCCCCCH----HHHHHHHHHHHhHcCCceEEEEEccCCCcccCCCCcccccc-cccceEEEEE
Confidence 4688999877652 23568888888889987652 333223333323333 6666555553
No 382
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=20.52 E-value=3.1e+02 Score=22.60 Aligned_cols=67 Identities=22% Similarity=0.365 Sum_probs=37.9
Q ss_pred HHHHhCCeEEEec--CCcccHHHHHHHHHHHHhccCCCcEEEEcCCCCchhHHHHHHHHHHcCCCCccccCcEEEcCCHH
Q 039983 103 EMARNADCFIALP--GGFGTLEELFEVTTWSQLGIHNKPVGLINVEGYYDPILNFIDKSIDEGFIYPSQRSIIVSASNAK 180 (220)
Q Consensus 103 ~~~~~sda~Ivlp--GG~GTL~El~~~~t~~qlg~~~kPIill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~d~e 180 (220)
-+...||++|.-. .|+|+- +.|++. .++||+..+..+ ...+ +.......+.-.+|++
T Consensus 259 ~~~~~~d~~i~ps~~e~~~~~--~~Ea~~------~G~PvI~~~~~~-~~e~------------i~~~~~g~~~~~~~~~ 317 (353)
T cd03811 259 PYLKAADLFVLSSRYEGFPNV--LLEAMA------LGTPVVATDCPG-PREI------------LEDGENGLLVPVGDEA 317 (353)
T ss_pred HHHHhCCEEEeCcccCCCCcH--HHHHHH------hCCCEEEcCCCC-hHHH------------hcCCCceEEECCCCHH
Confidence 3567899887643 344543 566776 489999887642 2221 2222234444456777
Q ss_pred HH---HHHHHhhc
Q 039983 181 EL---VQKLEDYV 190 (220)
Q Consensus 181 e~---~~~l~~~~ 190 (220)
++ ++.+....
T Consensus 318 ~~~~~~~~i~~~~ 330 (353)
T cd03811 318 ALAAAALALLDLL 330 (353)
T ss_pred HHHHHHHHHHhcc
Confidence 76 45555443
No 383
>PRK05593 rplR 50S ribosomal protein L18; Reviewed
Probab=20.49 E-value=3.2e+02 Score=21.10 Aligned_cols=39 Identities=23% Similarity=0.492 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHH----CCCeEE-E--cCCC-cChhHHHHHHHHhcCC
Q 039983 30 KAAVDLGNELVS----RGLDLV-Y--GGGS-VGLMGLISEEVHRGGR 68 (220)
Q Consensus 30 ~~A~~lG~~lA~----~g~~lV-t--GGg~-~GlM~ava~gA~~~gG 68 (220)
+.|+.+|+.||+ .|+.=| + ||.. -|-+.|+++||.++|-
T Consensus 69 ~aa~~vG~~la~ra~~~gi~~vvfDrg~~~yhGrV~a~a~~are~Gl 115 (117)
T PRK05593 69 EAAKKVGKLIAERAKAKGIKQVVFDRGGYKYHGRVKALADAAREAGL 115 (117)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEcCCCCcccHHHHHHHHHHHHhCC
Confidence 457777777776 465433 2 4422 4899999999999873
No 384
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=20.42 E-value=1.4e+02 Score=24.90 Aligned_cols=30 Identities=23% Similarity=0.356 Sum_probs=17.0
Q ss_pred eEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEcC
Q 039983 13 RVCVFCGSSPDYKYCYRKAAVDLGNELVSRGLDLVYGG 50 (220)
Q Consensus 13 ~I~Vfgss~~~~~~~~~~~A~~lG~~lA~~g~~lVtGG 50 (220)
+|-|.|+++- ..+.+++.++++|+.|+.-+
T Consensus 2 ~vlItGas~g--------IG~aia~~l~~~G~~V~~~~ 31 (259)
T PRK08340 2 NVLVTASSRG--------IGFNVARELLKKGARVVISS 31 (259)
T ss_pred eEEEEcCCcH--------HHHHHHHHHHHcCCEEEEEe
Confidence 4666666551 24455666666677655433
No 385
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=20.39 E-value=3e+02 Score=20.64 Aligned_cols=44 Identities=9% Similarity=-0.061 Sum_probs=25.4
Q ss_pred HhCCeEEEecCCcccHHHHHHHHHHHHhccCCCcEEEEcCCCCchhHHHHHH
Q 039983 106 RNADCFIALPGGFGTLEELFEVTTWSQLGIHNKPVGLINVEGYYDPILNFID 157 (220)
Q Consensus 106 ~~sda~IvlpGG~GTL~El~~~~t~~qlg~~~kPIill~~~g~~~~l~~~l~ 157 (220)
+..+.-++.. ||-+||..++- +...-++.+...||.+.+++.++
T Consensus 56 ~~~~vp~~~~---~t~~eLg~a~G-----k~~~~~iai~d~g~a~~l~~~~~ 99 (104)
T PRK05583 56 NKYNIPYIEG---YSKEELGNAIG-----RDEIKILGVKDKNMAKKLLKLWN 99 (104)
T ss_pred HHcCCCEEEe---cCHHHHHHHhC-----CCCeEEEEEeChHHHHHHHHHHH
Confidence 3445544444 68899987772 21111333334578888887664
No 386
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=20.32 E-value=4.9e+02 Score=21.40 Aligned_cols=71 Identities=13% Similarity=0.102 Sum_probs=0.0
Q ss_pred hhhhcCCCceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEcCCCcChhHHHHHHHHhcCCcEEEEeCCcccccc
Q 039983 4 KKEAKSRFKRVCVFCGSSPDYKYCYRKAAVDLGNELVSRGLDLVYGGGSVGLMGLISEEVHRGGRHVLGIIPKALMKKE 82 (220)
Q Consensus 4 ~~~~~~~~~~I~Vfgss~~~~~~~~~~~A~~lG~~lA~~g~~lVtGGg~~GlM~ava~gA~~~gG~viGv~P~~~~~~e 82 (220)
|-+-+-..++|.|.|++. ...+.+++.|+++|+.|+.-+...---.+......+.|.++..+..+...+..
T Consensus 3 ~~~~~~~~k~vlItGa~g--------~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~ 73 (255)
T PRK07523 3 LNLFDLTGRRALVTGSSQ--------GIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTDHDA 73 (255)
T ss_pred ccccCCCCCEEEEECCcc--------hHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCCHHH
No 387
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=20.22 E-value=1.5e+02 Score=26.11 Aligned_cols=38 Identities=13% Similarity=0.140 Sum_probs=21.7
Q ss_pred HHHHHHHHHCCCeEEEcCCCcChhHHHHHHHHhcC-CcEEEE
Q 039983 33 VDLGNELVSRGLDLVYGGGSVGLMGLISEEVHRGG-RHVLGI 73 (220)
Q Consensus 33 ~~lG~~lA~~g~~lVtGGg~~GlM~ava~gA~~~g-G~viGv 73 (220)
++.++.|++.|+.||-.|.. .+....-|.+-+ +.++-+
T Consensus 20 ~A~A~~l~~~G~~vvl~aRR---~drL~~la~~~~~~~~~~~ 58 (246)
T COG4221 20 EATARALAEAGAKVVLAARR---EERLEALADEIGAGAALAL 58 (246)
T ss_pred HHHHHHHHHCCCeEEEEecc---HHHHHHHHHhhccCceEEE
Confidence 45566777788888877776 233333333444 444443
No 388
>PRK07063 short chain dehydrogenase; Provisional
Probab=20.20 E-value=1.5e+02 Score=24.72 Aligned_cols=29 Identities=10% Similarity=0.135 Sum_probs=18.1
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEE
Q 039983 12 KRVCVFCGSSPDYKYCYRKAAVDLGNELVSRGLDLVY 48 (220)
Q Consensus 12 ~~I~Vfgss~~~~~~~~~~~A~~lG~~lA~~g~~lVt 48 (220)
++|.|.|+++- ..+.+++.|+++|+.|+.
T Consensus 8 k~vlVtGas~g--------IG~~~a~~l~~~G~~vv~ 36 (260)
T PRK07063 8 KVALVTGAAQG--------IGAAIARAFAREGAAVAL 36 (260)
T ss_pred CEEEEECCCch--------HHHHHHHHHHHCCCEEEE
Confidence 45777776652 235566667777877664
No 389
>TIGR00035 asp_race aspartate racemase.
Probab=20.20 E-value=5.1e+02 Score=21.74 Aligned_cols=78 Identities=17% Similarity=0.204 Sum_probs=42.1
Q ss_pred EEecCCcccHHHH--HHH---HHHHHhccCCCcEEEEcCCCC-----------chhHHHHHHHHHHcCCCCccccCcEEE
Q 039983 112 IALPGGFGTLEEL--FEV---TTWSQLGIHNKPVGLINVEGY-----------YDPILNFIDKSIDEGFIYPSQRSIIVS 175 (220)
Q Consensus 112 IvlpGG~GTL~El--~~~---~t~~qlg~~~kPIill~~~g~-----------~~~l~~~l~~~~~~g~i~~~~~~~i~~ 175 (220)
|-+-||.|.+.=+ +.- .+-.+.++...|+++++...+ |+....++..+.+. +-+....-.++.
T Consensus 4 iGiiGGmgp~at~~~~~~i~~~~~a~~d~~~~~~i~~~~~~~~dr~~~~~~~~~~~~~~~l~~~~~~-L~~~g~d~ivia 82 (229)
T TIGR00035 4 IGILGGMGPLATAELFRRINEKTKAKRDQEHPAEVLFNNPNIPDRTAYILGRGEDRPRPILIDIAVK-LENAGADFIIMP 82 (229)
T ss_pred EEEecCcCHHHHHHHHHHHHHHhHHhcCCCCCceeeeeCCCHHHHHHHHhcCCcchHHHHHHHHHHH-HHHcCCCEEEEC
Confidence 5566999987622 222 222334455677777765333 44444444333221 111122345677
Q ss_pred cCCHHHHHHHHHhhc
Q 039983 176 ASNAKELVQKLEDYV 190 (220)
Q Consensus 176 ~~d~ee~~~~l~~~~ 190 (220)
|+|+.-.++.|++..
T Consensus 83 CNTah~~~~~l~~~~ 97 (229)
T TIGR00035 83 CNTAHKFAEDIQKAI 97 (229)
T ss_pred CccHHHHHHHHHHhC
Confidence 888888888888754
No 390
>COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=20.15 E-value=1.6e+02 Score=24.35 Aligned_cols=33 Identities=21% Similarity=0.124 Sum_probs=18.8
Q ss_pred CceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEcCC
Q 039983 11 FKRVCVFCGSSPDYKYCYRKAAVDLGNELVSRGLDLVYGGG 51 (220)
Q Consensus 11 ~~~I~Vfgss~~~~~~~~~~~A~~lG~~lA~~g~~lVtGGg 51 (220)
.+.|-|-|+++ -..+.+++.|++.|+.++.-+.
T Consensus 5 ~~~ilITGas~--------GiG~aia~~l~~~G~~v~~~~~ 37 (251)
T COG1028 5 GKVALVTGASS--------GIGRAIARALAREGARVVVAAR 37 (251)
T ss_pred CCEEEEeCCCC--------HHHHHHHHHHHHCCCeEEEEcC
Confidence 45566666665 1334566666677777444333
No 391
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=20.15 E-value=1.4e+02 Score=24.93 Aligned_cols=10 Identities=40% Similarity=0.703 Sum_probs=5.7
Q ss_pred CCeEEEecCC
Q 039983 108 ADCFIALPGG 117 (220)
Q Consensus 108 sda~IvlpGG 117 (220)
-|++|-..|-
T Consensus 80 id~li~~Ag~ 89 (262)
T TIGR03325 80 IDCLIPNAGI 89 (262)
T ss_pred CCEEEECCCC
Confidence 3666666553
No 392
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=20.12 E-value=1.1e+02 Score=26.54 Aligned_cols=33 Identities=21% Similarity=0.291 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEEcCCCcChhHH
Q 039983 26 YCYRKAAVDLGNELVSRGLDLVYGGGSVGLMGL 58 (220)
Q Consensus 26 ~~~~~~A~~lG~~lA~~g~~lVtGGg~~GlM~a 58 (220)
|...+.+..+.+.|.+.|..+++|.|.+|.+..
T Consensus 33 ~~I~~av~~~~~~l~~ggrl~~~GaGtSg~la~ 65 (257)
T cd05007 33 PQIARAVDAAAERLRAGGRLIYVGAGTSGRLGV 65 (257)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEcCcHHHHHHH
Confidence 456677778888888888888899998777653
No 393
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=20.11 E-value=3.7e+02 Score=24.66 Aligned_cols=89 Identities=21% Similarity=0.194 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHCCCeEEEcCCCcChhHHHHHHHHhcCCcEEEEeCCcccccccC--CCCCceEeec--CCHHHHHH
Q 039983 27 CYRKAAVDLGNELVSRGLDLVYGGGSVGLMGLISEEVHRGGRHVLGIIPKALMKKELT--GVTLGEVKPV--DHMHQRKA 102 (220)
Q Consensus 27 ~~~~~A~~lG~~lA~~g~~lVtGGg~~GlM~ava~gA~~~gG~viGv~P~~~~~~e~~--~~~~~~~~~~--~~~~~Rk~ 102 (220)
...+..+.+++..-...+.+|+|+|..|.. +++.-.+.|-.++.|-.+...-.+.. ... ..++.. .+...-+.
T Consensus 216 ~l~~~~~~~~~~~~~~~~iiIiG~G~~g~~--l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~-~~~i~gd~~~~~~L~~ 292 (453)
T PRK09496 216 HIRAVMSEFGRLEKPVKRVMIVGGGNIGYY--LAKLLEKEGYSVKLIERDPERAEELAEELPN-TLVLHGDGTDQELLEE 292 (453)
T ss_pred HHHHHHHHhCccCCCCCEEEEECCCHHHHH--HHHHHHhCCCeEEEEECCHHHHHHHHHHCCC-CeEEECCCCCHHHHHh
Confidence 344444555543333577899999874444 66655556778777732211000100 111 122322 23344444
Q ss_pred HHHHhCCeEEEecCCc
Q 039983 103 EMARNADCFIALPGGF 118 (220)
Q Consensus 103 ~~~~~sda~IvlpGG~ 118 (220)
.-++.+|++|++.+.-
T Consensus 293 ~~~~~a~~vi~~~~~~ 308 (453)
T PRK09496 293 EGIDEADAFIALTNDD 308 (453)
T ss_pred cCCccCCEEEECCCCc
Confidence 5567889999887764
No 394
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=20.10 E-value=1.5e+02 Score=24.81 Aligned_cols=30 Identities=30% Similarity=0.421 Sum_probs=22.6
Q ss_pred CCeEEEcCCCcChhHHHHHHHHhcCCcEEEE
Q 039983 43 GLDLVYGGGSVGLMGLISEEVHRGGRHVLGI 73 (220)
Q Consensus 43 g~~lVtGGg~~GlM~ava~gA~~~gG~viGv 73 (220)
...|||||.. |+=.++++...+.|-+|+.+
T Consensus 10 k~vlItG~s~-gIG~~la~~l~~~G~~v~~~ 39 (266)
T PRK06171 10 KIIIVTGGSS-GIGLAIVKELLANGANVVNA 39 (266)
T ss_pred CEEEEeCCCC-hHHHHHHHHHHHCCCEEEEE
Confidence 4567888877 88778888777777777766
No 395
>PLN02564 6-phosphofructokinase
Probab=20.10 E-value=3.2e+02 Score=26.44 Aligned_cols=52 Identities=23% Similarity=0.274 Sum_probs=34.3
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHHHCCCe-EEEcCCCcChhHHHHHHH---HhcCCc--EEEE
Q 039983 15 CVFCGSSPDYKYCYRKAAVDLGNELVSRGLD-LVYGGGSVGLMGLISEEV---HRGGRH--VLGI 73 (220)
Q Consensus 15 ~Vfgss~~~~~~~~~~~A~~lG~~lA~~g~~-lVtGGg~~GlM~ava~gA---~~~gG~--viGv 73 (220)
++.|+||.. +. ..++.+.|.+.|+. |++=||. |-|..+.+=+ .+.|-. ||||
T Consensus 154 TiLGTsR~~--~~----~~~iv~~L~~~~Id~LivIGGD-GS~~gA~~L~e~~~~~g~~i~VIGI 211 (484)
T PLN02564 154 TILGTSRGG--HD----TSKIVDSIQDRGINQVYIIGGD-GTQKGASVIYEEIRRRGLKVAVAGI 211 (484)
T ss_pred ceeccCCCc--ch----HHHHHHHHHHhCCCEEEEECCc-hHHHHHHHHHHHHHHcCCCceEEEe
Confidence 677888753 22 24567777777776 4456666 9998876544 346755 8888
Done!