Query 039984
Match_columns 93
No_of_seqs 161 out of 1257
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 03:56:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039984.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039984hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0158 Cytochrome P450 CYP3/C 99.9 1.8E-26 3.8E-31 155.2 8.9 91 1-93 405-498 (499)
2 KOG0157 Cytochrome P450 CYP4/C 99.9 1.3E-25 2.8E-30 151.9 8.8 92 1-93 403-495 (497)
3 PLN02169 fatty acid (omega-1)- 99.9 4.6E-25 1E-29 149.2 9.7 92 1-93 406-499 (500)
4 PLN03195 fatty acid omega-hydr 99.9 8E-25 1.7E-29 148.3 9.1 92 1-93 423-515 (516)
5 PF00067 p450: Cytochrome P450 99.9 9.8E-25 2.1E-29 143.3 7.6 67 1-67 373-439 (463)
6 PLN03234 cytochrome P450 83B1; 99.9 1.6E-24 3.6E-29 146.1 8.7 93 1-93 399-498 (499)
7 PLN00110 flavonoid 3',5'-hydro 99.9 1.6E-24 3.4E-29 146.7 8.6 93 1-93 400-496 (504)
8 PLN02394 trans-cinnamate 4-mon 99.9 2.7E-24 5.8E-29 145.2 9.6 93 1-93 404-501 (503)
9 PLN02183 ferulate 5-hydroxylas 99.9 1.6E-24 3.4E-29 147.0 8.3 93 1-93 414-511 (516)
10 PLN02426 cytochrome P450, fami 99.9 3.8E-24 8.2E-29 144.9 9.5 93 1-93 405-499 (502)
11 PLN02738 carotene beta-ring hy 99.9 4.6E-24 1E-28 147.7 10.0 93 1-93 500-594 (633)
12 PLN00168 Cytochrome P450; Prov 99.9 4.2E-24 9E-29 145.0 9.4 93 1-93 418-516 (519)
13 PLN02971 tryptophan N-hydroxyl 99.9 2.6E-24 5.7E-29 146.7 8.5 92 1-93 438-533 (543)
14 KOG0156 Cytochrome P450 CYP2 s 99.9 2.5E-24 5.3E-29 145.3 8.2 90 1-92 397-486 (489)
15 PTZ00404 cytochrome P450; Prov 99.9 5E-24 1.1E-28 143.3 9.0 87 1-93 395-482 (482)
16 PLN02966 cytochrome P450 83A1 99.9 4.9E-24 1.1E-28 144.1 8.9 92 1-92 402-498 (502)
17 PLN02655 ent-kaurene oxidase 99.9 9.3E-24 2E-28 141.7 9.2 92 1-93 372-463 (466)
18 PLN02687 flavonoid 3'-monooxyg 99.9 7.8E-24 1.7E-28 143.6 8.9 93 1-93 408-508 (517)
19 KOG0159 Cytochrome P450 CYP11/ 99.9 6.3E-24 1.4E-28 142.0 7.9 91 1-93 427-517 (519)
20 PLN02500 cytochrome P450 90B1 99.9 1.3E-23 2.7E-28 141.7 8.6 90 1-93 394-489 (490)
21 PLN03141 3-epi-6-deoxocathaste 99.9 1.7E-23 3.7E-28 140.0 7.9 85 1-93 365-449 (452)
22 PLN02290 cytokinin trans-hydro 99.9 3.5E-23 7.5E-28 140.3 8.9 89 1-93 425-514 (516)
23 PLN02774 brassinosteroid-6-oxi 99.9 3.5E-23 7.7E-28 138.8 8.2 86 1-92 377-462 (463)
24 PLN03018 homomethionine N-hydr 99.9 7.4E-23 1.6E-27 139.5 9.8 92 1-93 425-523 (534)
25 PLN02936 epsilon-ring hydroxyl 99.9 7.6E-23 1.6E-27 138.1 9.5 92 1-93 388-481 (489)
26 PLN02302 ent-kaurenoic acid ox 99.9 5.7E-23 1.2E-27 138.2 8.5 87 1-93 401-487 (490)
27 PLN03112 cytochrome P450 famil 99.9 7.3E-23 1.6E-27 138.7 8.9 93 1-93 407-507 (514)
28 KOG0684 Cytochrome P450 [Secon 99.9 9.7E-23 2.1E-27 134.5 7.3 92 1-92 388-483 (486)
29 PLN02987 Cytochrome P450, fami 99.9 2.6E-22 5.6E-27 135.2 9.2 89 1-93 380-468 (472)
30 PLN02196 abscisic acid 8'-hydr 99.9 1.7E-22 3.6E-27 135.7 7.1 84 1-91 377-460 (463)
31 COG2124 CypX Cytochrome P450 [ 99.8 3.1E-19 6.7E-24 118.7 6.4 58 1-68 330-387 (411)
32 PLN02648 allene oxide synthase 99.7 9.5E-18 2.1E-22 113.5 7.3 66 1-69 388-463 (480)
33 PF08492 SRP72: SRP72 RNA-bind 83.0 1 2.2E-05 22.4 1.6 8 11-18 43-50 (59)
34 PF09201 SRX: SRX; InterPro: 77.9 3.1 6.7E-05 24.4 2.6 22 39-60 19-40 (148)
35 PF12444 Sox_N: Sox developmen 74.1 2.4 5.1E-05 22.7 1.4 20 48-67 60-79 (84)
36 cd00652 TBP_TLF TATA box bindi 73.5 4.8 0.0001 24.4 2.8 56 9-64 29-86 (174)
37 PRK14759 potassium-transportin 72.9 1.5 3.2E-05 18.6 0.3 6 11-16 24-29 (29)
38 cd04518 TBP_archaea archaeal T 69.9 2.1 4.5E-05 26.0 0.6 35 9-43 29-63 (174)
39 PRK00394 transcription factor; 68.9 2.4 5.3E-05 25.8 0.8 34 9-42 28-61 (179)
40 PF09604 Potass_KdpF: F subuni 68.4 2.1 4.6E-05 17.5 0.3 6 11-16 20-25 (25)
41 COG2101 SPT15 TATA-box binding 65.0 2.2 4.8E-05 26.0 0.1 35 10-44 36-70 (185)
42 KOG3506 40S ribosomal protein 62.5 3.5 7.6E-05 20.2 0.5 11 31-41 12-22 (56)
43 KOG3302 TATA-box binding prote 60.0 5 0.00011 24.9 1.0 33 10-42 51-83 (200)
44 PLN00062 TATA-box-binding prot 57.9 4.1 8.9E-05 24.8 0.4 55 9-63 29-85 (179)
45 TIGR02115 potass_kdpF K+-trans 56.8 2.6 5.6E-05 17.4 -0.4 7 11-17 19-25 (26)
46 PF00352 TBP: Transcription fa 55.5 5.6 0.00012 21.0 0.6 34 10-43 32-65 (86)
47 cd04516 TBP_eukaryotes eukaryo 54.8 4.9 0.00011 24.4 0.4 56 9-64 29-86 (174)
48 PF14510 ABC_trans_N: ABC-tran 39.4 9.2 0.0002 20.1 -0.1 17 2-18 25-41 (85)
49 PHA03162 hypothetical protein; 34.0 31 0.00068 20.1 1.5 24 34-57 2-25 (135)
50 cd04517 TLF TBP-like factors ( 33.1 8.3 0.00018 23.4 -1.0 36 9-44 121-156 (174)
51 PF02663 FmdE: FmdE, Molybdenu 32.8 36 0.00079 19.3 1.7 20 38-57 5-24 (131)
52 PF11297 DUF3098: Protein of u 31.2 26 0.00057 18.0 0.8 12 6-17 31-42 (69)
53 PTZ00218 40S ribosomal protein 29.5 24 0.00053 17.2 0.5 10 32-41 11-20 (54)
54 COG0794 GutQ Predicted sugar p 28.2 21 0.00046 22.3 0.2 26 29-54 41-66 (202)
55 PF07886 BA14K: BA14K-like pro 26.5 68 0.0015 13.7 1.8 14 28-41 18-31 (31)
56 KOG3262 H/ACA small nucleolar 20.9 53 0.0012 20.4 0.9 19 2-20 123-142 (215)
57 PF14459 Prok-E2_C: Prokaryoti 20.3 28 0.00061 19.7 -0.3 16 28-43 105-120 (131)
58 PHA02450 hypothetical protein 20.3 60 0.0013 15.3 0.8 9 6-14 29-37 (53)
No 1
>KOG0158 consensus Cytochrome P450 CYP3/CYP5/CYP6/CYP9 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.94 E-value=1.8e-26 Score=155.22 Aligned_cols=91 Identities=25% Similarity=0.418 Sum_probs=76.4
Q ss_pred CCCCCCCCCCcCCCccCCCCCCCCCCCcceeeccCCCCCCCCHHHHHHHHHHHHHHHHHhceeecCCCCCCcccc---ee
Q 039984 1 DESTWDNPHTFIPERFLRSNVDFKGQNFELIPFGAGRRICPGLPLAIRMLYLMLGSLINSFDWKLEDENMDMEEK---FG 77 (93)
Q Consensus 1 dp~~~~~p~~F~PeR~l~~~~~~~~~~~~~~~Fg~G~~~C~G~~~a~~~~~~~~~~ll~~f~~~~~~~~~~~~~~---~~ 77 (93)
||++|+||++|+||||++++.. ..++.+|+|||.|+|+|+|.+||++|+|+.++.||++|+++..+..... .. .+
T Consensus 405 Dp~~~p~Pe~F~PERF~~~~~~-~~~~~~ylPFG~GPR~CIGmRfa~mq~K~~L~~lL~~f~~~~~~~t~~~-~~~~~~~ 482 (499)
T KOG0158|consen 405 DPEYWPEPEKFKPERFEEENNK-SRHPGAYLPFGVGPRNCIGMRFALMEAKLALAHLLRNFSFEVCPTTIIP-LEGDPKG 482 (499)
T ss_pred CcccCCCcccCCCccCCCCccc-ccCCccccCCCCCccccHHHHHHHHHHHHHHHHHHhhCEEecCCcccCc-ccCCccc
Confidence 8999999999999999977643 4566799999999999999999999999999999999999987722222 22 26
Q ss_pred eEeccCCCeEEEEeeC
Q 039984 78 ITIMKAQPLRAVPVAI 93 (93)
Q Consensus 78 ~~~~~~~~~~~~~~~~ 93 (93)
.++.|..++.++..+|
T Consensus 483 ~~l~pk~gi~Lkl~~r 498 (499)
T KOG0158|consen 483 FTLSPKGGIWLKLEPR 498 (499)
T ss_pred eeeecCCceEEEEEeC
Confidence 6778888899988775
No 2
>KOG0157 consensus Cytochrome P450 CYP4/CYP19/CYP26 subfamilies [Secondary metabolites biosynthesis, transport and catabolism; Lipid transport and metabolism]
Probab=99.93 E-value=1.3e-25 Score=151.91 Aligned_cols=92 Identities=27% Similarity=0.453 Sum_probs=78.7
Q ss_pred CCCCCC-CCCCcCCCccCCCCCCCCCCCcceeeccCCCCCCCCHHHHHHHHHHHHHHHHHhceeecCCCCCCcccceeeE
Q 039984 1 DESTWD-NPHTFIPERFLRSNVDFKGQNFELIPFGAGRRICPGLPLAIRMLYLMLGSLINSFDWKLEDENMDMEEKFGIT 79 (93)
Q Consensus 1 dp~~~~-~p~~F~PeR~l~~~~~~~~~~~~~~~Fg~G~~~C~G~~~a~~~~~~~~~~ll~~f~~~~~~~~~~~~~~~~~~ 79 (93)
|+.+|+ ||++|+||||+++......++++|+|||+|+|.|+|++||++||+++++.++++|+|++..+.. ......++
T Consensus 403 ~~~~~~~dp~~F~PeRf~~~~~~~~~~~~~fipFsaGpR~CiG~~fA~lemKv~l~~ll~~f~~~~~~~~~-~~~~~~~~ 481 (497)
T KOG0157|consen 403 DPRVWGEDPEEFDPERFLDGEEKAKRHPFAFIPFSAGPRNCIGQKFAMLEMKVVLAHLLRRFRIEPVGGDK-PKPVPELT 481 (497)
T ss_pred CccccCCChhhcCccccCCCCCcCCCCCccccCCCCCcccchhHHHHHHHHHHHHHHHHHheEEEecCCCC-ceeeeEEE
Confidence 678896 9999999999975443455678999999999999999999999999999999999999887443 45567788
Q ss_pred eccCCCeEEEEeeC
Q 039984 80 IMKAQPLRAVPVAI 93 (93)
Q Consensus 80 ~~~~~~~~~~~~~~ 93 (93)
+.+..++.++.++|
T Consensus 482 l~~~~gl~v~~~~r 495 (497)
T KOG0157|consen 482 LRPKNGLKVKLRPR 495 (497)
T ss_pred EEecCCeEEEEEeC
Confidence 88999999998875
No 3
>PLN02169 fatty acid (omega-1)-hydroxylase/midchain alkane hydroxylase
Probab=99.92 E-value=4.6e-25 Score=149.25 Aligned_cols=92 Identities=22% Similarity=0.472 Sum_probs=74.2
Q ss_pred CCCCC-CCCCCcCCCccCCCCCCCC-CCCcceeeccCCCCCCCCHHHHHHHHHHHHHHHHHhceeecCCCCCCcccceee
Q 039984 1 DESTW-DNPHTFIPERFLRSNVDFK-GQNFELIPFGAGRRICPGLPLAIRMLYLMLGSLINSFDWKLEDENMDMEEKFGI 78 (93)
Q Consensus 1 dp~~~-~~p~~F~PeR~l~~~~~~~-~~~~~~~~Fg~G~~~C~G~~~a~~~~~~~~~~ll~~f~~~~~~~~~~~~~~~~~ 78 (93)
||++| +||++|+||||++++.... ...+.++|||+|+|.|+|+++|.+|++++++.|+++|++++.++. .......+
T Consensus 406 d~~~w~~dP~~F~PeRfl~~~~~~~~~~~~~~lPFG~GpR~CiG~~~A~~e~k~~la~ll~~f~~~~~~~~-~~~~~~~~ 484 (500)
T PLN02169 406 MRSVWGEDALDFKPERWISDNGGLRHEPSYKFMAFNSGPRTCLGKHLALLQMKIVALEIIKNYDFKVIEGH-KIEAIPSI 484 (500)
T ss_pred CccccCCChhhcCccccCCCCCCccCCCCccccCCCCCCCCCcCHHHHHHHHHHHHHHHHHHCEEEEcCCC-Ccccccce
Confidence 78999 8999999999997543222 235689999999999999999999999999999999999887532 22334456
Q ss_pred EeccCCCeEEEEeeC
Q 039984 79 TIMKAQPLRAVPVAI 93 (93)
Q Consensus 79 ~~~~~~~~~~~~~~~ 93 (93)
++.+..++.+++++|
T Consensus 485 ~l~~~~gl~l~l~~~ 499 (500)
T PLN02169 485 LLRMKHGLKVTVTKK 499 (500)
T ss_pred EEecCCCEEEEEEeC
Confidence 777888888888764
No 4
>PLN03195 fatty acid omega-hydroxylase; Provisional
Probab=99.92 E-value=8e-25 Score=148.26 Aligned_cols=92 Identities=24% Similarity=0.390 Sum_probs=71.5
Q ss_pred CCCCC-CCCCCcCCCccCCCCCCCCCCCcceeeccCCCCCCCCHHHHHHHHHHHHHHHHHhceeecCCCCCCcccceeeE
Q 039984 1 DESTW-DNPHTFIPERFLRSNVDFKGQNFELIPFGAGRRICPGLPLAIRMLYLMLGSLINSFDWKLEDENMDMEEKFGIT 79 (93)
Q Consensus 1 dp~~~-~~p~~F~PeR~l~~~~~~~~~~~~~~~Fg~G~~~C~G~~~a~~~~~~~~~~ll~~f~~~~~~~~~~~~~~~~~~ 79 (93)
||++| +||++|+||||++++......++.++|||+|+|.|+|+++|++|++++++.|+++|++++.+.. ........+
T Consensus 423 dp~~~g~dP~~F~PeRwl~~~~~~~~~~~~~~pFG~G~R~CiG~~lA~~e~~~~la~ll~~f~~~~~~~~-~~~~~~~~~ 501 (516)
T PLN03195 423 MEYNWGPDAASFKPERWIKDGVFQNASPFKFTAFQAGPRICLGKDSAYLQMKMALALLCRFFKFQLVPGH-PVKYRMMTI 501 (516)
T ss_pred ChhhhccChhhcCCcccCCCCCcCCCCCceEeccCCCCCcCcCHHHHHHHHHHHHHHHHHhceeEecCCC-cceeeeeeE
Confidence 78999 9999999999996432122344579999999999999999999999999999999999986522 222223345
Q ss_pred eccCCCeEEEEeeC
Q 039984 80 IMKAQPLRAVPVAI 93 (93)
Q Consensus 80 ~~~~~~~~~~~~~~ 93 (93)
+.+..++.++.++|
T Consensus 502 ~~~~~~~~v~~~~r 515 (516)
T PLN03195 502 LSMANGLKVTVSRR 515 (516)
T ss_pred EecCCCEEEEEEeC
Confidence 66777888877765
No 5
>PF00067 p450: Cytochrome P450 p450 superfamily signature b-class p450 signature mitochondrial p450 signature E-class p450 group I signature E-class p450 group II signature E-class p450 group IV signature; InterPro: IPR001128 Cytochrome P450 enzymes are a superfamily of haem-containing mono-oxygenases that are found in all kingdoms of life, and which show extraordinary diversity in their reaction chemistry. In mammals, these proteins are found primarily in microsomes of hepatocytes and other cell types, where they oxidise steroids, fatty acids and xenobiotics, and are important for the detoxification and clearance of various compounds, as well as for hormone synthesis and breakdown, cholesterol synthesis and vitamin D metabolism. In plants, these proteins are important for the biosynthesis of several compounds such as hormones, defensive compounds and fatty acids. In bacteria, they are important for several metabolic processes, such as the biosynthesis of antibiotic erythromycin in Saccharopolyspora erythraea (Streptomyces erythraeus). Cytochrome P450 enzymes use haem to oxidise their substrates, using protons derived from NADH or NADPH to split the oxygen so a single atom can be added to a substrate. They also require electrons, which they receive from a variety of redox partners. In certain cases, cytochrome P450 can be fused to its redox partner to produce a bi-functional protein, such as with P450BM-3 from Bacillus megaterium [], which has haem and flavin domains. Organisms produce many different cytochrome P450 enzymes (at least 58 in humans), which together with alternative splicing can provide a wide array of enzymes with different substrate and tissue specificities. Individual cytochrome P450 proteins follow the nomenclature: CYP, followed by a number (family), then a letter (subfamily), and another number (protein); e.g. CYP3A4 is the fourth protein in family 3, subfamily A. In general, family members should share >40% identity, while subfamily members should share >55% identity. Cytochrome P450 proteins can also be grouped by two different schemes. One scheme was based on a taxonomic split: class I (prokaryotic/mitochondrial) and class II (eukaryotic microsomes). The other scheme was based on the number of components in the system: class B (3-components) and class E (2-components). These classes merge to a certain degree. Most prokaryotes and mitochondria (and fungal CYP55) have 3-component systems (class I/class B) - a FAD-containing flavoprotein (NAD(P)H-dependent reductase), an iron-sulphur protein and P450. Most eukaryotic microsomes have 2-component systems (class II/class E) - NADPH:P450 reductase (FAD and FMN-containing flavoprotein) and P450. There are exceptions to this scheme, such as 1-component systems that resemble class E enzymes [, , ]. The class E enzymes can be further subdivided into five sequence clusters, groups I-V, each of which may contain more than one cytochrome P450 family (eg, CYP1 and CYP2 are both found in group I). The divergence of the cytochrome P450 superfamily into B- and E-classes, and further divergence into stable clusters within the E-class, appears to be very ancient, occurring before the appearance of eukaryotes. More information about these proteins can be found at Protein of the Month: Cytochrome P450 [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0020037 heme binding, 0055114 oxidation-reduction process; PDB: 2RFC_B 2RFB_A 3EJB_H 3EJE_H 3EJD_H 1N6B_A 1NR6_A 1DT6_A 3EL3_A 3DBG_B ....
Probab=99.91 E-value=9.8e-25 Score=143.30 Aligned_cols=67 Identities=37% Similarity=0.726 Sum_probs=57.5
Q ss_pred CCCCCCCCCCcCCCccCCCCCCCCCCCcceeeccCCCCCCCCHHHHHHHHHHHHHHHHHhceeecCC
Q 039984 1 DESTWDNPHTFIPERFLRSNVDFKGQNFELIPFGAGRRICPGLPLAIRMLYLMLGSLINSFDWKLED 67 (93)
Q Consensus 1 dp~~~~~p~~F~PeR~l~~~~~~~~~~~~~~~Fg~G~~~C~G~~~a~~~~~~~~~~ll~~f~~~~~~ 67 (93)
||++|+||++|+||||++.+.........++|||.|+|.|+|+++|.+++++++|.|+++|++++.+
T Consensus 373 d~~~~~dp~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~la~ll~~f~~~~~~ 439 (463)
T PF00067_consen 373 DPEYFPDPDEFDPERFLDERGISNRPSFAFLPFGAGPRMCPGRNLAMMEMKVFLAKLLRRFDFELVP 439 (463)
T ss_dssp STTTSSSTTS--TTGGBTTTSTBCSSSTTSSTTESSTTS-TTHHHHHHHHHHHHHHHHHHEEEEEST
T ss_pred cccccccccccccccccccccccccccccccccccccccchHHHHHHHHHHHHHHHHHHhCEEEECC
Confidence 7899999999999999987652334566899999999999999999999999999999999999965
No 6
>PLN03234 cytochrome P450 83B1; Provisional
Probab=99.91 E-value=1.6e-24 Score=146.15 Aligned_cols=93 Identities=42% Similarity=0.914 Sum_probs=74.7
Q ss_pred CCCCC-CCCCCcCCCccCCCCCC--CCCCCcceeeccCCCCCCCCHHHHHHHHHHHHHHHHHhceeecCCC----CCCcc
Q 039984 1 DESTW-DNPHTFIPERFLRSNVD--FKGQNFELIPFGAGRRICPGLPLAIRMLYLMLGSLINSFDWKLEDE----NMDME 73 (93)
Q Consensus 1 dp~~~-~~p~~F~PeR~l~~~~~--~~~~~~~~~~Fg~G~~~C~G~~~a~~~~~~~~~~ll~~f~~~~~~~----~~~~~ 73 (93)
||++| +||++|+||||+++... .......++|||+|+|.|+|+++|.+|+++++|.|+++|++++.+. .....
T Consensus 399 d~~~~~~~P~~F~PeR~l~~~~~~~~~~~~~~~~pFG~G~R~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~ 478 (499)
T PLN03234 399 DTAAWGDNPNEFIPERFMKEHKGVDFKGQDFELLPFGSGRRMCPAMHLGIAMVEIPFANLLYKFDWSLPKGIKPEDIKMD 478 (499)
T ss_pred CcccccCChhhcCchhhcCCCCCcCcCCCcceEeCCCCCCCCCCChHHHHHHHHHHHHHHHHheeeeCCCCCCCCCCCcc
Confidence 78999 89999999999975432 2234568999999999999999999999999999999999998762 12233
Q ss_pred cceeeEeccCCCeEEEEeeC
Q 039984 74 EKFGITIMKAQPLRAVPVAI 93 (93)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~ 93 (93)
...++...+...+.+.++++
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~ 498 (499)
T PLN03234 479 VMTGLAMHKKEHLVLAPTKH 498 (499)
T ss_pred cccccccccCCCeEEEeecC
Confidence 34566667778888888764
No 7
>PLN00110 flavonoid 3',5'-hydroxylase (F3'5'H); Provisional
Probab=99.91 E-value=1.6e-24 Score=146.73 Aligned_cols=93 Identities=48% Similarity=0.949 Sum_probs=72.7
Q ss_pred CCCCCCCCCCcCCCccCCCCCCCC---CCCcceeeccCCCCCCCCHHHHHHHHHHHHHHHHHhceeecCCC-CCCcccce
Q 039984 1 DESTWDNPHTFIPERFLRSNVDFK---GQNFELIPFGAGRRICPGLPLAIRMLYLMLGSLINSFDWKLEDE-NMDMEEKF 76 (93)
Q Consensus 1 dp~~~~~p~~F~PeR~l~~~~~~~---~~~~~~~~Fg~G~~~C~G~~~a~~~~~~~~~~ll~~f~~~~~~~-~~~~~~~~ 76 (93)
||++|+||++|+||||++++.... ...+.++|||+|+|.|+|+++|.+|+++++|.|+++|++++.+. +.......
T Consensus 400 d~~~~~dP~~F~PeRfl~~~~~~~~~~~~~~~~~pFG~G~R~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~ 479 (504)
T PLN00110 400 DPDVWENPEEFRPERFLSEKNAKIDPRGNDFELIPFGAGRRICAGTRMGIVLVEYILGTLVHSFDWKLPDGVELNMDEAF 479 (504)
T ss_pred ChhhcCCcccCCcccccCCCCcccccCCCeeeEeCCCCCCCCCCcHHHHHHHHHHHHHHHHHhceeecCCCCccCccccc
Confidence 789999999999999996532211 12347999999999999999999999999999999999998763 22222344
Q ss_pred eeEeccCCCeEEEEeeC
Q 039984 77 GITIMKAQPLRAVPVAI 93 (93)
Q Consensus 77 ~~~~~~~~~~~~~~~~~ 93 (93)
++++.+..++.+.+++|
T Consensus 480 ~~~~~~~~~~~~~~~~r 496 (504)
T PLN00110 480 GLALQKAVPLSAMVTPR 496 (504)
T ss_pred ccccccCCCceEeeccC
Confidence 56666777888877764
No 8
>PLN02394 trans-cinnamate 4-monooxygenase
Probab=99.91 E-value=2.7e-24 Score=145.24 Aligned_cols=93 Identities=35% Similarity=0.700 Sum_probs=70.2
Q ss_pred CCCCCCCCCCcCCCccCCCCCC--CCCCCcceeeccCCCCCCCCHHHHHHHHHHHHHHHHHhceeecCCCC--CCcccce
Q 039984 1 DESTWDNPHTFIPERFLRSNVD--FKGQNFELIPFGAGRRICPGLPLAIRMLYLMLGSLINSFDWKLEDEN--MDMEEKF 76 (93)
Q Consensus 1 dp~~~~~p~~F~PeR~l~~~~~--~~~~~~~~~~Fg~G~~~C~G~~~a~~~~~~~~~~ll~~f~~~~~~~~--~~~~~~~ 76 (93)
||++|+||++|+||||++++.. .......++|||.|+|.|+|+++|.+|+++++|.++++|++++.++. .+..+..
T Consensus 404 d~~~~~~P~~F~PeRwl~~~~~~~~~~~~~~~~pFg~G~R~CiG~~~A~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~ 483 (503)
T PLN02394 404 NPELWKNPEEFRPERFLEEEAKVEANGNDFRFLPFGVGRRSCPGIILALPILGIVLGRLVQNFELLPPPGQSKIDVSEKG 483 (503)
T ss_pred CcccCCCccccCccccCCCCCcccccCCCCceeCCCCCCCCCCCHHHHHHHHHHHHHHHHHHceeEeCCCCCcCcccccc
Confidence 7899999999999999975421 12234589999999999999999999999999999999999876632 3333333
Q ss_pred e-eEeccCCCeEEEEeeC
Q 039984 77 G-ITIMKAQPLRAVPVAI 93 (93)
Q Consensus 77 ~-~~~~~~~~~~~~~~~~ 93 (93)
+ +....+.+..+++.+|
T Consensus 484 ~~~~~~~~~~~~~~~~~r 501 (503)
T PLN02394 484 GQFSLHIAKHSTVVFKPR 501 (503)
T ss_pred CceeeccCCCceEEeecC
Confidence 2 4443344666666554
No 9
>PLN02183 ferulate 5-hydroxylase
Probab=99.91 E-value=1.6e-24 Score=146.96 Aligned_cols=93 Identities=46% Similarity=0.944 Sum_probs=71.0
Q ss_pred CCCCCCCCCCcCCCccCCCCCC-CCCCCcceeeccCCCCCCCCHHHHHHHHHHHHHHHHHhceeecCCCC----CCcccc
Q 039984 1 DESTWDNPHTFIPERFLRSNVD-FKGQNFELIPFGAGRRICPGLPLAIRMLYLMLGSLINSFDWKLEDEN----MDMEEK 75 (93)
Q Consensus 1 dp~~~~~p~~F~PeR~l~~~~~-~~~~~~~~~~Fg~G~~~C~G~~~a~~~~~~~~~~ll~~f~~~~~~~~----~~~~~~ 75 (93)
||++|+||++|+||||++++.. .....+.++|||+|+|.|+|+++|.+|+++++|.|+++|++++.+.. ......
T Consensus 414 d~~~~~dP~~F~PeRfl~~~~~~~~~~~~~~lpFG~G~R~CiG~~lA~~e~~l~la~ll~~f~~~~~~~~~~~~~~~~~~ 493 (516)
T PLN02183 414 DKNSWEDPDTFKPSRFLKPGVPDFKGSHFEFIPFGSGRRSCPGMQLGLYALDLAVAHLLHCFTWELPDGMKPSELDMNDV 493 (516)
T ss_pred CccccCCccccCchhhCCCCCccccCCcceecCCCCCCCCCCChHHHHHHHHHHHHHHHheeEEEcCCCCCCCCCChhhc
Confidence 7899999999999999975432 12344589999999999999999999999999999999999986622 222223
Q ss_pred eeeEeccCCCeEEEEeeC
Q 039984 76 FGITIMKAQPLRAVPVAI 93 (93)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~ 93 (93)
.+...+...++.+..++|
T Consensus 494 ~~~~~~~~~~~~~~~~~r 511 (516)
T PLN02183 494 FGLTAPRATRLVAVPTYR 511 (516)
T ss_pred cccccccCCCcEEEeecC
Confidence 344444556777777665
No 10
>PLN02426 cytochrome P450, family 94, subfamily C protein
Probab=99.91 E-value=3.8e-24 Score=144.92 Aligned_cols=93 Identities=23% Similarity=0.305 Sum_probs=72.8
Q ss_pred CCCCC-CCCCCcCCCccCCCCCCCCCCCcceeeccCCCCCCCCHHHHHHHHHHHHHHHHHhceeecCCCC-CCcccceee
Q 039984 1 DESTW-DNPHTFIPERFLRSNVDFKGQNFELIPFGAGRRICPGLPLAIRMLYLMLGSLINSFDWKLEDEN-MDMEEKFGI 78 (93)
Q Consensus 1 dp~~~-~~p~~F~PeR~l~~~~~~~~~~~~~~~Fg~G~~~C~G~~~a~~~~~~~~~~ll~~f~~~~~~~~-~~~~~~~~~ 78 (93)
||++| +||++|+||||++++.......+.++|||+|+|.|+|+++|.+|++++++.|+++|++++.++. .......++
T Consensus 405 d~~~~G~dp~~F~PeRwl~~~~~~~~~~~~~~pFg~G~R~CiG~~~A~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~ 484 (502)
T PLN02426 405 MERIWGPDCLEFKPERWLKNGVFVPENPFKYPVFQAGLRVCLGKEMALMEMKSVAVAVVRRFDIEVVGRSNRAPRFAPGL 484 (502)
T ss_pred CccccCcChhhcCccccCCCCCcCCCCCcccCCCCCCCCCCccHHHHHHHHHHHHHHHHHHceEEEecCCCCCCccccee
Confidence 78999 9999999999997432112334578999999999999999999999999999999999986422 122333456
Q ss_pred EeccCCCeEEEEeeC
Q 039984 79 TIMKAQPLRAVPVAI 93 (93)
Q Consensus 79 ~~~~~~~~~~~~~~~ 93 (93)
++.+..++.+++++|
T Consensus 485 ~~~~~~gl~v~~~~r 499 (502)
T PLN02426 485 TATVRGGLPVRVRER 499 (502)
T ss_pred EEecCCCEEEEEEEc
Confidence 777777888887764
No 11
>PLN02738 carotene beta-ring hydroxylase
Probab=99.91 E-value=4.6e-24 Score=147.68 Aligned_cols=93 Identities=27% Similarity=0.439 Sum_probs=70.9
Q ss_pred CCCCCCCCCCcCCCccCCCCC--CCCCCCcceeeccCCCCCCCCHHHHHHHHHHHHHHHHHhceeecCCCCCCcccceee
Q 039984 1 DESTWDNPHTFIPERFLRSNV--DFKGQNFELIPFGAGRRICPGLPLAIRMLYLMLGSLINSFDWKLEDENMDMEEKFGI 78 (93)
Q Consensus 1 dp~~~~~p~~F~PeR~l~~~~--~~~~~~~~~~~Fg~G~~~C~G~~~a~~~~~~~~~~ll~~f~~~~~~~~~~~~~~~~~ 78 (93)
||++|+||++|+||||+.+.. ........++|||.|+|.|+|+++|.+|+++++|.|+++|+|++......+......
T Consensus 500 dp~ifpdP~~F~PERWl~~~~~~~~~~~~~~~vpFG~G~R~CiG~~lA~~El~l~LA~Llr~F~~el~~~~~~~~~~~~~ 579 (633)
T PLN02738 500 SPKHWDDAEKFNPERWPLDGPNPNETNQNFSYLPFGGGPRKCVGDMFASFENVVATAMLVRRFDFQLAPGAPPVKMTTGA 579 (633)
T ss_pred CccccCCccccCcccCCCCCCCccccCCCCceeCCCCCCCCCcCHHHHHHHHHHHHHHHHHhCeeEeCCCCCCcccccce
Confidence 789999999999999985321 122344589999999999999999999999999999999999987633223322344
Q ss_pred EeccCCCeEEEEeeC
Q 039984 79 TIMKAQPLRAVPVAI 93 (93)
Q Consensus 79 ~~~~~~~~~~~~~~~ 93 (93)
++.+..++.+++++|
T Consensus 580 ~~~p~~~l~v~l~~R 594 (633)
T PLN02738 580 TIHTTEGLKMTVTRR 594 (633)
T ss_pred EEeeCCCcEEEEEEC
Confidence 555556667766654
No 12
>PLN00168 Cytochrome P450; Provisional
Probab=99.91 E-value=4.2e-24 Score=144.98 Aligned_cols=93 Identities=38% Similarity=0.738 Sum_probs=70.0
Q ss_pred CCCCCCCCCCcCCCccCCCCCC-----CCCCCcceeeccCCCCCCCCHHHHHHHHHHHHHHHHHhceeecCCC-CCCccc
Q 039984 1 DESTWDNPHTFIPERFLRSNVD-----FKGQNFELIPFGAGRRICPGLPLAIRMLYLMLGSLINSFDWKLEDE-NMDMEE 74 (93)
Q Consensus 1 dp~~~~~p~~F~PeR~l~~~~~-----~~~~~~~~~~Fg~G~~~C~G~~~a~~~~~~~~~~ll~~f~~~~~~~-~~~~~~ 74 (93)
||++|+||++|+||||++.... .....+.++|||.|+|.|+|+++|.+|++++++.|+++|++++.+. ..+...
T Consensus 418 d~~~~~~p~~F~PeRf~~~~~~~~~~~~~~~~~~~~pFG~G~R~C~G~~lA~~e~~~~la~ll~~f~~~~~~~~~~~~~~ 497 (519)
T PLN00168 418 DEREWERPMEFVPERFLAGGDGEGVDVTGSREIRMMPFGVGRRICAGLGIAMLHLEYFVANMVREFEWKEVPGDEVDFAE 497 (519)
T ss_pred CccccCCccccCcccCCCCCCCccccccccCCcceeCCCCCCCCCCcHHHHHHHHHHHHHHHHHHccceeCCCCcCChhh
Confidence 7899999999999999964211 1123457999999999999999999999999999999999998752 223222
Q ss_pred ceeeEeccCCCeEEEEeeC
Q 039984 75 KFGITIMKAQPLRAVPVAI 93 (93)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~ 93 (93)
...++..+..++.+.+++|
T Consensus 498 ~~~~~~~~~~~~~~~~~~R 516 (519)
T PLN00168 498 KREFTTVMAKPLRARLVPR 516 (519)
T ss_pred hceeEEeecCCcEEEEEec
Confidence 2334454555676666654
No 13
>PLN02971 tryptophan N-hydroxylase
Probab=99.91 E-value=2.6e-24 Score=146.69 Aligned_cols=92 Identities=26% Similarity=0.571 Sum_probs=70.8
Q ss_pred CCCCCCCCCCcCCCccCCCCCC--CCCCCcceeeccCCCCCCCCHHHHHHHHHHHHHHHHHhceeecCC--CCCCcccce
Q 039984 1 DESTWDNPHTFIPERFLRSNVD--FKGQNFELIPFGAGRRICPGLPLAIRMLYLMLGSLINSFDWKLED--ENMDMEEKF 76 (93)
Q Consensus 1 dp~~~~~p~~F~PeR~l~~~~~--~~~~~~~~~~Fg~G~~~C~G~~~a~~~~~~~~~~ll~~f~~~~~~--~~~~~~~~~ 76 (93)
||++|+||++|+||||++++.. ....+..++|||.|+|.|+|+++|+.|+++++|.|+++|+|++.+ ...++.+..
T Consensus 438 d~~~~~dP~~F~PeRfl~~~~~~~~~~~~~~~~pFG~G~R~C~G~~lA~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~ 517 (543)
T PLN02971 438 NPKVWSDPLSFKPERHLNECSEVTLTENDLRFISFSTGKRGCAAPALGTAITTMMLARLLQGFKWKLAGSETRVELMESS 517 (543)
T ss_pred ChhhCCCccccCcccCCCCCccccccCCCCccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCEEEeCCCCCCcchhhhc
Confidence 7899999999999999975422 112345899999999999999999999999999999999999876 234555554
Q ss_pred eeEeccCCCeEEEEeeC
Q 039984 77 GITIMKAQPLRAVPVAI 93 (93)
Q Consensus 77 ~~~~~~~~~~~~~~~~~ 93 (93)
+ ++....++.+.+.+|
T Consensus 518 ~-~~~~~~~~~~~~~~~ 533 (543)
T PLN02971 518 H-DMFLSKPLVMVGELR 533 (543)
T ss_pred C-cccccccceeeeeec
Confidence 4 443334666666554
No 14
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.91 E-value=2.5e-24 Score=145.30 Aligned_cols=90 Identities=57% Similarity=1.060 Sum_probs=73.7
Q ss_pred CCCCCCCCCCcCCCccCCCCCCCCCCCcceeeccCCCCCCCCHHHHHHHHHHHHHHHHHhceeecCCCCCCcccceeeEe
Q 039984 1 DESTWDNPHTFIPERFLRSNVDFKGQNFELIPFGAGRRICPGLPLAIRMLYLMLGSLINSFDWKLEDENMDMEEKFGITI 80 (93)
Q Consensus 1 dp~~~~~p~~F~PeR~l~~~~~~~~~~~~~~~Fg~G~~~C~G~~~a~~~~~~~~~~ll~~f~~~~~~~~~~~~~~~~~~~ 80 (93)
||++|+||++|+||||++++ +.......++|||.|+|.|+|..+|.+++.+++|.|+++|+|++..+.+++.+. +.+.
T Consensus 397 Dp~vw~dP~eF~PERFl~~~-d~~~~~~~~iPFG~GRR~CpG~~La~~~l~l~la~llq~F~w~~~~~~~d~~e~-~~~~ 474 (489)
T KOG0156|consen 397 DPKVWEDPEEFKPERFLDSN-DGKGLDFKLIPFGSGRRICPGEGLARAELFLFLANLLQRFDWKLPGGKVDMEEA-GLTL 474 (489)
T ss_pred CCccCCCccccChhhhcCCc-cccCCceEecCCCCCcCCCCcHHHHHHHHHHHHHHHHheeeeecCCCCCCCccc-ccce
Confidence 89999999999999999875 233355689999999999999999999999999999999999988654455555 3556
Q ss_pred ccCCCeEEEEee
Q 039984 81 MKAQPLRAVPVA 92 (93)
Q Consensus 81 ~~~~~~~~~~~~ 92 (93)
....++.....+
T Consensus 475 ~~~~pl~~~~~~ 486 (489)
T KOG0156|consen 475 KKKKPLKAVPVP 486 (489)
T ss_pred ecCCcceeeeec
Confidence 556666666554
No 15
>PTZ00404 cytochrome P450; Provisional
Probab=99.91 E-value=5e-24 Score=143.33 Aligned_cols=87 Identities=31% Similarity=0.589 Sum_probs=68.4
Q ss_pred CCCCCCCCCCcCCCccCCCCCCCCCCCcceeeccCCCCCCCCHHHHHHHHHHHHHHHHHhceeecCCC-CCCcccceeeE
Q 039984 1 DESTWDNPHTFIPERFLRSNVDFKGQNFELIPFGAGRRICPGLPLAIRMLYLMLGSLINSFDWKLEDE-NMDMEEKFGIT 79 (93)
Q Consensus 1 dp~~~~~p~~F~PeR~l~~~~~~~~~~~~~~~Fg~G~~~C~G~~~a~~~~~~~~~~ll~~f~~~~~~~-~~~~~~~~~~~ 79 (93)
||++|+||++|+||||++.. ....++|||+|+|.|+|+++|.+|++++++.++++|++++.+. +.......+++
T Consensus 395 dp~~~~dP~~F~PeRwl~~~-----~~~~~~pFg~G~R~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~ 469 (482)
T PTZ00404 395 NEKYFENPEQFDPSRFLNPD-----SNDAFMPFSIGPRNCVGQQFAQDELYLAFSNIILNFKLKSIDGKKIDETEEYGLT 469 (482)
T ss_pred CccccCCccccCccccCCCC-----CCCceeccCCCCCCCccHHHHHHHHHHHHHHHHHhcEEecCCCCCCCccccccee
Confidence 79999999999999998642 3458999999999999999999999999999999999998653 22222333454
Q ss_pred eccCCCeEEEEeeC
Q 039984 80 IMKAQPLRAVPVAI 93 (93)
Q Consensus 80 ~~~~~~~~~~~~~~ 93 (93)
.. ..++.+.+++|
T Consensus 470 ~~-~~~~~v~~~~R 482 (482)
T PTZ00404 470 LK-PNKFKVLLEKR 482 (482)
T ss_pred ec-CCCceeeeecC
Confidence 54 34567766654
No 16
>PLN02966 cytochrome P450 83A1
Probab=99.91 E-value=4.9e-24 Score=144.11 Aligned_cols=92 Identities=45% Similarity=0.894 Sum_probs=70.6
Q ss_pred CCCCC-CCCCCcCCCccCCCCCCCCCCCcceeeccCCCCCCCCHHHHHHHHHHHHHHHHHhceeecCCCC----CCcccc
Q 039984 1 DESTW-DNPHTFIPERFLRSNVDFKGQNFELIPFGAGRRICPGLPLAIRMLYLMLGSLINSFDWKLEDEN----MDMEEK 75 (93)
Q Consensus 1 dp~~~-~~p~~F~PeR~l~~~~~~~~~~~~~~~Fg~G~~~C~G~~~a~~~~~~~~~~ll~~f~~~~~~~~----~~~~~~ 75 (93)
||++| +||++|+||||++++......+..++|||+|+|.|+|+++|.+|+++++|.|+++|++++.+.. ......
T Consensus 402 dp~~~g~dP~~F~PeRwl~~~~~~~~~~~~~~pFg~G~R~C~G~~~A~~el~~~la~ll~~f~i~~~~~~~~~~~~~~~~ 481 (502)
T PLN02966 402 DEKEWGPNPDEFRPERFLEKEVDFKGTDYEFIPFGSGRRMCPGMRLGAAMLEVPYANLLLNFNFKLPNGMKPDDINMDVM 481 (502)
T ss_pred CcccccCChhhCChhhhcCCCCCcCCCcCCccCCCCCCCCCCCHHHHHHHHHHHHHHHHHhceeeCCCCCCcccCCcccc
Confidence 78999 9999999999997543222345689999999999999999999999999999999999987621 222233
Q ss_pred eeeEeccCCCeEEEEee
Q 039984 76 FGITIMKAQPLRAVPVA 92 (93)
Q Consensus 76 ~~~~~~~~~~~~~~~~~ 92 (93)
.++...+...+++..++
T Consensus 482 ~~~~~~~~~~~~~~~~~ 498 (502)
T PLN02966 482 TGLAMHKSQHLKLVPEK 498 (502)
T ss_pred cCeeeccCCCeEEEEEe
Confidence 45555444467777665
No 17
>PLN02655 ent-kaurene oxidase
Probab=99.90 E-value=9.3e-24 Score=141.72 Aligned_cols=92 Identities=29% Similarity=0.661 Sum_probs=72.6
Q ss_pred CCCCCCCCCCcCCCccCCCCCCCCCCCcceeeccCCCCCCCCHHHHHHHHHHHHHHHHHhceeecCCCCCCcccceeeEe
Q 039984 1 DESTWDNPHTFIPERFLRSNVDFKGQNFELIPFGAGRRICPGLPLAIRMLYLMLGSLINSFDWKLEDENMDMEEKFGITI 80 (93)
Q Consensus 1 dp~~~~~p~~F~PeR~l~~~~~~~~~~~~~~~Fg~G~~~C~G~~~a~~~~~~~~~~ll~~f~~~~~~~~~~~~~~~~~~~ 80 (93)
||++|+||++|+||||++++... .....++|||.|+|.|+|+++|..+++++++.|+++|++++.++........+++.
T Consensus 372 d~~~~~~p~~F~PeR~~~~~~~~-~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~ 450 (466)
T PLN02655 372 DKKRWENPEEWDPERFLGEKYES-ADMYKTMAFGAGKRVCAGSLQAMLIACMAIARLVQEFEWRLREGDEEKEDTVQLTT 450 (466)
T ss_pred CcccCCChhccCccccCCCCccc-CCcccccCCCCCCCCCCcHHHHHHHHHHHHHHHHHHeEEEeCCCCccccchhheeE
Confidence 78999999999999999754221 22358999999999999999999999999999999999998763322333455666
Q ss_pred ccCCCeEEEEeeC
Q 039984 81 MKAQPLRAVPVAI 93 (93)
Q Consensus 81 ~~~~~~~~~~~~~ 93 (93)
.+..++.+.+++|
T Consensus 451 ~~~~~~~~~~~~r 463 (466)
T PLN02655 451 QKLHPLHAHLKPR 463 (466)
T ss_pred eecCCcEEEEeec
Confidence 6766777776654
No 18
>PLN02687 flavonoid 3'-monooxygenase
Probab=99.90 E-value=7.8e-24 Score=143.60 Aligned_cols=93 Identities=46% Similarity=0.944 Sum_probs=71.9
Q ss_pred CCCCCCCCCCcCCCccCCCCCCC----CCCCcceeeccCCCCCCCCHHHHHHHHHHHHHHHHHhceeecCCCC----CCc
Q 039984 1 DESTWDNPHTFIPERFLRSNVDF----KGQNFELIPFGAGRRICPGLPLAIRMLYLMLGSLINSFDWKLEDEN----MDM 72 (93)
Q Consensus 1 dp~~~~~p~~F~PeR~l~~~~~~----~~~~~~~~~Fg~G~~~C~G~~~a~~~~~~~~~~ll~~f~~~~~~~~----~~~ 72 (93)
||++|+||++|+||||++++... ......++|||+|+|.|+|+++|.+|+++++|.|+++|++++.++. ...
T Consensus 408 d~~~~~dp~~F~PeRfl~~~~~~~~~~~~~~~~~~pFG~G~r~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~~~~~~~~ 487 (517)
T PLN02687 408 DPEQWPDPLEFRPDRFLPGGEHAGVDVKGSDFELIPFGAGRRICAGLSWGLRMVTLLTATLVHAFDWELADGQTPDKLNM 487 (517)
T ss_pred CcccCCCcccCCchhcCCCCCccccccCCCceeeCCCCCCCCCCCChHHHHHHHHHHHHHHHHhcceecCCCCCcccCCc
Confidence 78999999999999999753211 1234579999999999999999999999999999999999987522 222
Q ss_pred ccceeeEeccCCCeEEEEeeC
Q 039984 73 EEKFGITIMKAQPLRAVPVAI 93 (93)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~ 93 (93)
.....+...+..++.+++++|
T Consensus 488 ~~~~~~~~~~~~~~~~~~~~R 508 (517)
T PLN02687 488 EEAYGLTLQRAVPLMVHPRPR 508 (517)
T ss_pred ccccceeeecCCCeEEeeccC
Confidence 223344555666788888775
No 19
>KOG0159 consensus Cytochrome P450 CYP11/CYP12/CYP24/CYP27 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.90 E-value=6.3e-24 Score=142.03 Aligned_cols=91 Identities=27% Similarity=0.501 Sum_probs=78.2
Q ss_pred CCCCCCCCCCcCCCccCCCCCCCCCCCcceeeccCCCCCCCCHHHHHHHHHHHHHHHHHhceeecCCCCCCcccceeeEe
Q 039984 1 DESTWDNPHTFIPERFLRSNVDFKGQNFELIPFGAGRRICPGLPLAIRMLYLMLGSLINSFDWKLEDENMDMEEKFGITI 80 (93)
Q Consensus 1 dp~~~~~p~~F~PeR~l~~~~~~~~~~~~~~~Fg~G~~~C~G~~~a~~~~~~~~~~ll~~f~~~~~~~~~~~~~~~~~~~ 80 (93)
||++|++|++|+|||||++.. ...++..++|||.|+|+|+|+.+|++|+.+.+|.++++|+++...+ .++.....+.+
T Consensus 427 ~~~~F~~p~~F~PeRWL~~~~-~~~~pF~~LPFGfG~R~C~GRRiAElEl~llLarllr~f~V~~~~~-~pv~~~~~~il 504 (519)
T KOG0159|consen 427 NPAYFPDPEEFLPERWLKPST-KTIHPFASLPFGFGPRMCLGRRIAELELHLLLARLLRNFKVEFLHE-EPVEYVYRFIL 504 (519)
T ss_pred ChhhCCCccccChhhhccccc-CCCCCceecCCCCCccccchHHHHHHHHHHHHHHHHHhcceeecCC-CCccceeEEEE
Confidence 578899999999999998653 4556779999999999999999999999999999999999998763 34555566778
Q ss_pred ccCCCeEEEEeeC
Q 039984 81 MKAQPLRAVPVAI 93 (93)
Q Consensus 81 ~~~~~~~~~~~~~ 93 (93)
.|..++.+++++|
T Consensus 505 ~P~~~l~f~f~~r 517 (519)
T KOG0159|consen 505 VPNRPLRFKFRPR 517 (519)
T ss_pred cCCCCcceeeeeC
Confidence 8888999998875
No 20
>PLN02500 cytochrome P450 90B1
Probab=99.90 E-value=1.3e-23 Score=141.73 Aligned_cols=90 Identities=26% Similarity=0.454 Sum_probs=68.3
Q ss_pred CCCCCCCCCCcCCCccCCCCCCCC------CCCcceeeccCCCCCCCCHHHHHHHHHHHHHHHHHhceeecCCCCCCccc
Q 039984 1 DESTWDNPHTFIPERFLRSNVDFK------GQNFELIPFGAGRRICPGLPLAIRMLYLMLGSLINSFDWKLEDENMDMEE 74 (93)
Q Consensus 1 dp~~~~~p~~F~PeR~l~~~~~~~------~~~~~~~~Fg~G~~~C~G~~~a~~~~~~~~~~ll~~f~~~~~~~~~~~~~ 74 (93)
||++|+||++|+||||++++.... ..++.++|||+|+|.|+|+++|.+|++++++.|+++|+|++.++.....
T Consensus 394 dp~~~~dP~~F~PeRfl~~~~~~~~~~~~~~~~~~~lpFG~G~R~CiG~~~A~~el~~~la~ll~~f~~~~~~~~~~~~- 472 (490)
T PLN02500 394 DSSLYDQPQLFNPWRWQQNNNRGGSSGSSSATTNNFMPFGGGPRLCAGSELAKLEMAVFIHHLVLNFNWELAEADQAFA- 472 (490)
T ss_pred CcccCCCccccChhhccCCCcccccccccCCCCCCCcCCCCCCCCCCcHHHHHHHHHHHHHHHHhccEEEEcCCCccee-
Confidence 789999999999999996542111 2345899999999999999999999999999999999999876332221
Q ss_pred ceeeEeccCCCeEEEEeeC
Q 039984 75 KFGITIMKAQPLRAVPVAI 93 (93)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~ 93 (93)
. ... .+..++.+++.++
T Consensus 473 ~-~~~-~~~~~l~~~~~~~ 489 (490)
T PLN02500 473 F-PFV-DFPKGLPIRVRRI 489 (490)
T ss_pred c-ccc-cCCCCceEEEEeC
Confidence 1 122 2335777777654
No 21
>PLN03141 3-epi-6-deoxocathasterone 23-monooxygenase; Provisional
Probab=99.90 E-value=1.7e-23 Score=139.95 Aligned_cols=85 Identities=33% Similarity=0.579 Sum_probs=69.5
Q ss_pred CCCCCCCCCCcCCCccCCCCCCCCCCCcceeeccCCCCCCCCHHHHHHHHHHHHHHHHHhceeecCCCCCCcccceeeEe
Q 039984 1 DESTWDNPHTFIPERFLRSNVDFKGQNFELIPFGAGRRICPGLPLAIRMLYLMLGSLINSFDWKLEDENMDMEEKFGITI 80 (93)
Q Consensus 1 dp~~~~~p~~F~PeR~l~~~~~~~~~~~~~~~Fg~G~~~C~G~~~a~~~~~~~~~~ll~~f~~~~~~~~~~~~~~~~~~~ 80 (93)
||++|+||++|+||||++++. .+..++|||+|+|.|+|+++|.+|+++++|.|+++|++++.++.. . ...++
T Consensus 365 d~~~~~dP~~F~PeRfl~~~~----~~~~~~pFG~G~R~C~G~~lA~~el~~~la~ll~~f~~~~~~~~~--~--~~~~~ 436 (452)
T PLN03141 365 DEENYDNPYQFNPWRWQEKDM----NNSSFTPFGGGQRLCPGLDLARLEASIFLHHLVTRFRWVAEEDTI--V--NFPTV 436 (452)
T ss_pred CchhcCCccccCcccccCCCC----CCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhcCeeecCCCCe--e--ecccc
Confidence 789999999999999997531 245899999999999999999999999999999999998765331 1 22456
Q ss_pred ccCCCeEEEEeeC
Q 039984 81 MKAQPLRAVPVAI 93 (93)
Q Consensus 81 ~~~~~~~~~~~~~ 93 (93)
.+..++.+++.+|
T Consensus 437 ~~~~~~~~~~~~~ 449 (452)
T PLN03141 437 RMKRKLPIWVTRI 449 (452)
T ss_pred cCCCCceEEEEeC
Confidence 6777888877765
No 22
>PLN02290 cytokinin trans-hydroxylase
Probab=99.89 E-value=3.5e-23 Score=140.27 Aligned_cols=89 Identities=25% Similarity=0.441 Sum_probs=70.8
Q ss_pred CCCCC-CCCCCcCCCccCCCCCCCCCCCcceeeccCCCCCCCCHHHHHHHHHHHHHHHHHhceeecCCCCCCcccceeeE
Q 039984 1 DESTW-DNPHTFIPERFLRSNVDFKGQNFELIPFGAGRRICPGLPLAIRMLYLMLGSLINSFDWKLEDENMDMEEKFGIT 79 (93)
Q Consensus 1 dp~~~-~~p~~F~PeR~l~~~~~~~~~~~~~~~Fg~G~~~C~G~~~a~~~~~~~~~~ll~~f~~~~~~~~~~~~~~~~~~ 79 (93)
||++| +||++|+||||++.. ......++|||.|+|.|+|+++|++|++++++.|+++|++++.++.. ......++
T Consensus 425 dp~~~~~dP~~F~PeRfl~~~---~~~~~~~~pFG~G~R~C~G~~lA~~el~l~la~ll~~f~~~~~~~~~-~~~~~~~~ 500 (516)
T PLN02290 425 SEELWGKDANEFNPDRFAGRP---FAPGRHFIPFAAGPRNCIGQAFAMMEAKIILAMLISKFSFTISDNYR-HAPVVVLT 500 (516)
T ss_pred ChhhhCCChhhcCccccCCCC---CCCCCeEecCCCCCCCCccHHHHHHHHHHHHHHHHHhceEeeCCCcc-cCccceee
Confidence 78999 899999999999532 12234799999999999999999999999999999999999876321 22223466
Q ss_pred eccCCCeEEEEeeC
Q 039984 80 IMKAQPLRAVPVAI 93 (93)
Q Consensus 80 ~~~~~~~~~~~~~~ 93 (93)
..|..++.+++++|
T Consensus 501 ~~p~~~~~~~~~~~ 514 (516)
T PLN02290 501 IKPKYGVQVCLKPL 514 (516)
T ss_pred ecCCCCCeEEEEeC
Confidence 77777888877664
No 23
>PLN02774 brassinosteroid-6-oxidase
Probab=99.89 E-value=3.5e-23 Score=138.84 Aligned_cols=86 Identities=22% Similarity=0.395 Sum_probs=66.7
Q ss_pred CCCCCCCCCCcCCCccCCCCCCCCCCCcceeeccCCCCCCCCHHHHHHHHHHHHHHHHHhceeecCCCCCCcccceeeEe
Q 039984 1 DESTWDNPHTFIPERFLRSNVDFKGQNFELIPFGAGRRICPGLPLAIRMLYLMLGSLINSFDWKLEDENMDMEEKFGITI 80 (93)
Q Consensus 1 dp~~~~~p~~F~PeR~l~~~~~~~~~~~~~~~Fg~G~~~C~G~~~a~~~~~~~~~~ll~~f~~~~~~~~~~~~~~~~~~~ 80 (93)
||++|+||++|+||||++++. ... ..++|||+|+|.|+|+++|.+|++++++.|+++|++++.++... ... ..+
T Consensus 377 dp~~~~dP~~F~PeRfl~~~~--~~~-~~~lpFG~G~r~C~G~~~A~~e~~~~la~Ll~~f~~~~~~~~~~-~~~--~~~ 450 (463)
T PLN02774 377 DPFLYPDPMTFNPWRWLDKSL--ESH-NYFFLFGGGTRLCPGKELGIVEISTFLHYFVTRYRWEEVGGDKL-MKF--PRV 450 (463)
T ss_pred CcccCCChhccCchhcCCCCc--CCC-ccccCcCCCCCcCCcHHHHHHHHHHHHHHHHHhceEEECCCCcc-ccC--CCC
Confidence 799999999999999996442 112 26999999999999999999999999999999999998763321 111 123
Q ss_pred ccCCCeEEEEee
Q 039984 81 MKAQPLRAVPVA 92 (93)
Q Consensus 81 ~~~~~~~~~~~~ 92 (93)
.|..++.+++.+
T Consensus 451 ~p~~g~~~~~~~ 462 (463)
T PLN02774 451 EAPNGLHIRVSP 462 (463)
T ss_pred CCCCCceEEeee
Confidence 355677777654
No 24
>PLN03018 homomethionine N-hydroxylase
Probab=99.89 E-value=7.4e-23 Score=139.55 Aligned_cols=92 Identities=27% Similarity=0.577 Sum_probs=69.4
Q ss_pred CCCCCCCCCCcCCCccCCCCCCC-----CCCCcceeeccCCCCCCCCHHHHHHHHHHHHHHHHHhceeecCCC--CCCcc
Q 039984 1 DESTWDNPHTFIPERFLRSNVDF-----KGQNFELIPFGAGRRICPGLPLAIRMLYLMLGSLINSFDWKLEDE--NMDME 73 (93)
Q Consensus 1 dp~~~~~p~~F~PeR~l~~~~~~-----~~~~~~~~~Fg~G~~~C~G~~~a~~~~~~~~~~ll~~f~~~~~~~--~~~~~ 73 (93)
||++|+||++|+||||++++... ......++|||.|+|.|+|+++|.++++++++.|+++|++++.+. ..+..
T Consensus 425 dp~~~~~p~~F~PeRfl~~~~~~~~~~~~~~~~~~lpFG~G~R~C~G~~lA~~e~~~~la~ll~~f~~~~~~~~~~~~~~ 504 (534)
T PLN03018 425 NPKIWKDPLVYEPERHLQGDGITKEVTLVETEMRFVSFSTGRRGCVGVKVGTIMMVMMLARFLQGFNWKLHQDFGPLSLE 504 (534)
T ss_pred CcccCCCccccCCccCCCCCCccccccccCCCCCccCCCCCCCCCccHHHHHHHHHHHHHHHHHhceEEeCCCCCCCCcc
Confidence 78999999999999999643211 123458999999999999999999999999999999999997663 22222
Q ss_pred cceeeEeccCCCeEEEEeeC
Q 039984 74 EKFGITIMKAQPLRAVPVAI 93 (93)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~ 93 (93)
...+.+.. ..++.+.+++|
T Consensus 505 ~~~~~~~~-p~~~~v~~~~R 523 (534)
T PLN03018 505 EDDASLLM-AKPLLLSVEPR 523 (534)
T ss_pred ccccceec-CCCeEEEEEec
Confidence 22233333 34777777665
No 25
>PLN02936 epsilon-ring hydroxylase
Probab=99.89 E-value=7.6e-23 Score=138.10 Aligned_cols=92 Identities=25% Similarity=0.407 Sum_probs=70.1
Q ss_pred CCCCCCCCCCcCCCccCCCCCC--CCCCCcceeeccCCCCCCCCHHHHHHHHHHHHHHHHHhceeecCCCCCCcccceee
Q 039984 1 DESTWDNPHTFIPERFLRSNVD--FKGQNFELIPFGAGRRICPGLPLAIRMLYLMLGSLINSFDWKLEDENMDMEEKFGI 78 (93)
Q Consensus 1 dp~~~~~p~~F~PeR~l~~~~~--~~~~~~~~~~Fg~G~~~C~G~~~a~~~~~~~~~~ll~~f~~~~~~~~~~~~~~~~~ 78 (93)
||++|+||++|+||||+..+.. ....+..++|||.|+|.|+|+++|+++++++++.|+++|++++.+.+. ......+
T Consensus 388 d~~~~~dP~~F~PeRwl~~~~~~~~~~~~~~~~pFg~G~R~C~G~~la~~~~~~~la~ll~~f~~~~~~~~~-~~~~~~~ 466 (489)
T PLN02936 388 SPEVWERAEEFVPERFDLDGPVPNETNTDFRYIPFSGGPRKCVGDQFALLEAIVALAVLLQRLDLELVPDQD-IVMTTGA 466 (489)
T ss_pred ChhhCCCccccCccccCCCCCCccccCCCcceeCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCeEEecCCCc-cceecce
Confidence 7899999999999999964321 122345899999999999999999999999999999999999876321 2222334
Q ss_pred EeccCCCeEEEEeeC
Q 039984 79 TIMKAQPLRAVPVAI 93 (93)
Q Consensus 79 ~~~~~~~~~~~~~~~ 93 (93)
...+..++.+++++|
T Consensus 467 ~~~~~~~~~v~~~~R 481 (489)
T PLN02936 467 TIHTTNGLYMTVSRR 481 (489)
T ss_pred EEeeCCCeEEEEEee
Confidence 455656777776654
No 26
>PLN02302 ent-kaurenoic acid oxidase
Probab=99.89 E-value=5.7e-23 Score=138.17 Aligned_cols=87 Identities=21% Similarity=0.345 Sum_probs=68.3
Q ss_pred CCCCCCCCCCcCCCccCCCCCCCCCCCcceeeccCCCCCCCCHHHHHHHHHHHHHHHHHhceeecCCCCCCcccceeeEe
Q 039984 1 DESTWDNPHTFIPERFLRSNVDFKGQNFELIPFGAGRRICPGLPLAIRMLYLMLGSLINSFDWKLEDENMDMEEKFGITI 80 (93)
Q Consensus 1 dp~~~~~p~~F~PeR~l~~~~~~~~~~~~~~~Fg~G~~~C~G~~~a~~~~~~~~~~ll~~f~~~~~~~~~~~~~~~~~~~ 80 (93)
||++|+||++|+||||++.. ..+..++|||+|+|.|+|+++|.+|++++++.|+++|++++.++...+. .....
T Consensus 401 d~~~~~dP~~F~PeR~~~~~----~~~~~~~pFG~G~r~C~G~~lA~~e~~~~la~ll~~f~~~~~~~~~~~~--~~~~~ 474 (490)
T PLN02302 401 DPEVYPNPKEFDPSRWDNYT----PKAGTFLPFGLGSRLCPGNDLAKLEISIFLHHFLLGYRLERLNPGCKVM--YLPHP 474 (490)
T ss_pred CcccCCCccccChhhcCCCC----CCCCCccCCCCCCcCCCcHHHHHHHHHHHHHHHHhcCeeEEcCCCCcce--eCCCC
Confidence 78999999999999999643 2344799999999999999999999999999999999999876333222 22235
Q ss_pred ccCCCeEEEEeeC
Q 039984 81 MKAQPLRAVPVAI 93 (93)
Q Consensus 81 ~~~~~~~~~~~~~ 93 (93)
.|..++.+++++|
T Consensus 475 ~p~~~~~~~~~~~ 487 (490)
T PLN02302 475 RPKDNCLARITKV 487 (490)
T ss_pred CCCCCceEEEEec
Confidence 5666766666543
No 27
>PLN03112 cytochrome P450 family protein; Provisional
Probab=99.89 E-value=7.3e-23 Score=138.65 Aligned_cols=93 Identities=39% Similarity=0.823 Sum_probs=71.4
Q ss_pred CCCCCCCCCCcCCCccCCCCCC--C--CCCCcceeeccCCCCCCCCHHHHHHHHHHHHHHHHHhceeecCCC----CCCc
Q 039984 1 DESTWDNPHTFIPERFLRSNVD--F--KGQNFELIPFGAGRRICPGLPLAIRMLYLMLGSLINSFDWKLEDE----NMDM 72 (93)
Q Consensus 1 dp~~~~~p~~F~PeR~l~~~~~--~--~~~~~~~~~Fg~G~~~C~G~~~a~~~~~~~~~~ll~~f~~~~~~~----~~~~ 72 (93)
||++|+||++|+||||+.+... . ......++|||.|+|.|+|+++|.++++++++.|+++|++++.+. +...
T Consensus 407 d~~~~~dP~~F~PeRf~~~~~~~~~~~~~~~~~~~pFg~G~R~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~~~~~~~~ 486 (514)
T PLN03112 407 NTKIWDDVEEFRPERHWPAEGSRVEISHGPDFKILPFSAGKRKCPGAPLGVTMVLMALARLFHCFDWSPPDGLRPEDIDT 486 (514)
T ss_pred CcccCCChhhcCCcccCCCCCCccccccCCCcceeCCCCCCCCCCcHHHHHHHHHHHHHHHHHheeeecCCCCCcccCCC
Confidence 7899999999999998653211 1 122457999999999999999999999999999999999998752 2222
Q ss_pred ccceeeEeccCCCeEEEEeeC
Q 039984 73 EEKFGITIMKAQPLRAVPVAI 93 (93)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~ 93 (93)
....++..++..++.+.+.+|
T Consensus 487 ~~~~~~~~~~~~~~~~~~~~r 507 (514)
T PLN03112 487 QEVYGMTMPKAKPLRAVATPR 507 (514)
T ss_pred ccccCcccccCCCeEEEeecC
Confidence 233456666667888887765
No 28
>KOG0684 consensus Cytochrome P450 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.88 E-value=9.7e-23 Score=134.51 Aligned_cols=92 Identities=27% Similarity=0.488 Sum_probs=73.0
Q ss_pred CCCCCCCCCCcCCCccCCCCCCCC----CCCcceeeccCCCCCCCCHHHHHHHHHHHHHHHHHhceeecCCCCCCcccce
Q 039984 1 DESTWDNPHTFIPERFLRSNVDFK----GQNFELIPFGAGRRICPGLPLAIRMLYLMLGSLINSFDWKLEDENMDMEEKF 76 (93)
Q Consensus 1 dp~~~~~p~~F~PeR~l~~~~~~~----~~~~~~~~Fg~G~~~C~G~~~a~~~~~~~~~~ll~~f~~~~~~~~~~~~~~~ 76 (93)
||++|+||++|+|+||++++...+ .-++.++|||+|++.|+|+.||.+|+++++..+|++|++++.+.+.+...-.
T Consensus 388 ~peif~dp~~Fk~dRf~~~~~~~~k~g~kl~yy~mpfGaGr~~CpGr~FA~~eIk~~~~l~L~~fdleLid~~~P~~d~s 467 (486)
T KOG0684|consen 388 DPEIFPDPEDFKPDRFLKDNGESKKNGEKLDYYYMPFGAGRHRCPGRSFAYLEIKQFISLLLRHFDLELIDGPFPEVDYS 467 (486)
T ss_pred CccccCChhhCChhhccCCCcccccccccccccccccCCCcCCCCchHHHHHHHHHHHHHHHHHcceeecCCCCCCCCHH
Confidence 799999999999999998765442 2234579999999999999999999999999999999999998432222223
Q ss_pred eeEeccCCCeEEEEee
Q 039984 77 GITIMKAQPLRAVPVA 92 (93)
Q Consensus 77 ~~~~~~~~~~~~~~~~ 92 (93)
.++..|..+++++-+.
T Consensus 468 ~~v~~P~g~v~irYK~ 483 (486)
T KOG0684|consen 468 RMVMQPEGDVRIRYKR 483 (486)
T ss_pred HhhcCCCCCceEEEee
Confidence 3466677788777554
No 29
>PLN02987 Cytochrome P450, family 90, subfamily A
Probab=99.88 E-value=2.6e-22 Score=135.24 Aligned_cols=89 Identities=25% Similarity=0.418 Sum_probs=70.4
Q ss_pred CCCCCCCCCCcCCCccCCCCCCCCCCCcceeeccCCCCCCCCHHHHHHHHHHHHHHHHHhceeecCCCCCCcccceeeEe
Q 039984 1 DESTWDNPHTFIPERFLRSNVDFKGQNFELIPFGAGRRICPGLPLAIRMLYLMLGSLINSFDWKLEDENMDMEEKFGITI 80 (93)
Q Consensus 1 dp~~~~~p~~F~PeR~l~~~~~~~~~~~~~~~Fg~G~~~C~G~~~a~~~~~~~~~~ll~~f~~~~~~~~~~~~~~~~~~~ 80 (93)
||++|+||++|+||||++.... ......++|||+|+|.|+|+++|.+|++++++.|+++|++++.+.+ ... ...++
T Consensus 380 d~~~~~~p~~F~PeRfl~~~~~-~~~~~~~l~FG~G~r~C~G~~lA~~e~~~~la~ll~~f~~~~~~~~-~~~--~~~~~ 455 (472)
T PLN02987 380 DHEYFKDARTFNPWRWQSNSGT-TVPSNVFTPFGGGPRLCPGYELARVALSVFLHRLVTRFSWVPAEQD-KLV--FFPTT 455 (472)
T ss_pred CcccCCCccccCcccCCCCCCC-CCCCcceECCCCCCcCCCcHHHHHHHHHHHHHHHHhceEEEECCCC-cee--ecccc
Confidence 7899999999999999965322 2234579999999999999999999999999999999999987633 122 23366
Q ss_pred ccCCCeEEEEeeC
Q 039984 81 MKAQPLRAVPVAI 93 (93)
Q Consensus 81 ~~~~~~~~~~~~~ 93 (93)
.|..++.+++++|
T Consensus 456 ~p~~~~~~~~~~r 468 (472)
T PLN02987 456 RTQKRYPINVKRR 468 (472)
T ss_pred cCCCCceEEEEec
Confidence 6766777777664
No 30
>PLN02196 abscisic acid 8'-hydroxylase
Probab=99.87 E-value=1.7e-22 Score=135.65 Aligned_cols=84 Identities=21% Similarity=0.483 Sum_probs=66.8
Q ss_pred CCCCCCCCCCcCCCccCCCCCCCCCCCcceeeccCCCCCCCCHHHHHHHHHHHHHHHHHhceeecCCCCCCcccceeeEe
Q 039984 1 DESTWDNPHTFIPERFLRSNVDFKGQNFELIPFGAGRRICPGLPLAIRMLYLMLGSLINSFDWKLEDENMDMEEKFGITI 80 (93)
Q Consensus 1 dp~~~~~p~~F~PeR~l~~~~~~~~~~~~~~~Fg~G~~~C~G~~~a~~~~~~~~~~ll~~f~~~~~~~~~~~~~~~~~~~ 80 (93)
||++|+||++|+||||++.. .+..++|||+|+|.|+|+++|.++++++++.|+++|++++.+.+.... ...+.
T Consensus 377 d~~~~~dP~~F~PeRfl~~~-----~~~~~lpFG~G~r~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~~~~~--~~~~~ 449 (463)
T PLN02196 377 SADIFSDPGKFDPSRFEVAP-----KPNTFMPFGNGTHSCPGNELAKLEISVLIHHLTTKYRWSIVGTSNGIQ--YGPFA 449 (463)
T ss_pred CchhcCCcCccChhhhcCCC-----CCCcccCcCCCCCCCchHHHHHHHHHHHHHHHHHhcEEEEcCCCCceE--Ecccc
Confidence 78999999999999999632 234899999999999999999999999999999999999876443332 23334
Q ss_pred ccCCCeEEEEe
Q 039984 81 MKAQPLRAVPV 91 (93)
Q Consensus 81 ~~~~~~~~~~~ 91 (93)
.|...+.+++.
T Consensus 450 ~p~~~~~~~~~ 460 (463)
T PLN02196 450 LPQNGLPIALS 460 (463)
T ss_pred cCCCCceEEEe
Confidence 46666666543
No 31
>COG2124 CypX Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.78 E-value=3.1e-19 Score=118.69 Aligned_cols=58 Identities=36% Similarity=0.582 Sum_probs=54.0
Q ss_pred CCCCCCCCCCcCCCccCCCCCCCCCCCcceeeccCCCCCCCCHHHHHHHHHHHHHHHHHhceeecCCC
Q 039984 1 DESTWDNPHTFIPERFLRSNVDFKGQNFELIPFGAGRRICPGLPLAIRMLYLMLGSLINSFDWKLEDE 68 (93)
Q Consensus 1 dp~~~~~p~~F~PeR~l~~~~~~~~~~~~~~~Fg~G~~~C~G~~~a~~~~~~~~~~ll~~f~~~~~~~ 68 (93)
||++|++|++|+|+||. ..++|||+|.|.|+|..||++|++++++.++++|++....+
T Consensus 330 Dp~~f~~P~~F~p~R~~----------~~~l~FG~G~H~ClG~~lA~~E~~~~l~~ll~r~~~~~~~~ 387 (411)
T COG2124 330 DPEVFPDPDEFDPERFN----------NAHLPFGGGPHRCLGAALARLELKVALAELLRRFPLLLLAE 387 (411)
T ss_pred ChhhCCChhhcCCCCCC----------CCCcCCCCCCccccCHHHHHHHHHHHHHHHHHhCchhhcCC
Confidence 79999999999999998 27999999999999999999999999999999998877654
No 32
>PLN02648 allene oxide synthase
Probab=99.73 E-value=9.5e-18 Score=113.50 Aligned_cols=66 Identities=21% Similarity=0.519 Sum_probs=53.1
Q ss_pred CCCCCCCCCCcCCCccCCCCCCCCCCCcceee---------ccCCCCCCCCHHHHHHHHHHHHHHHHHhce-eecCCCC
Q 039984 1 DESTWDNPHTFIPERFLRSNVDFKGQNFELIP---------FGAGRRICPGLPLAIRMLYLMLGSLINSFD-WKLEDEN 69 (93)
Q Consensus 1 dp~~~~~p~~F~PeR~l~~~~~~~~~~~~~~~---------Fg~G~~~C~G~~~a~~~~~~~~~~ll~~f~-~~~~~~~ 69 (93)
||++|+||++|+|+||++++... ...+++ ||+|+|.|+|+++|.+|++++++.|+++|+ |++.++.
T Consensus 388 dp~~~~dP~~F~PeRf~~~~~~~---~~~~~~f~~g~~~~~~G~G~R~C~G~~~A~~e~~~~la~Ll~~f~~~~l~~~~ 463 (480)
T PLN02648 388 DPKVFDRPEEFVPDRFMGEEGEK---LLKYVFWSNGRETESPTVGNKQCAGKDFVVLVARLFVAELFLRYDSFEIEVDT 463 (480)
T ss_pred CcccCCCcceeCCCCCCCCCccc---cccccccCCCcccCCCCCCCccCccHHHHHHHHHHHHHHHHHHhCEEeecCCc
Confidence 78999999999999998643211 112333 367889999999999999999999999998 9987643
No 33
>PF08492 SRP72: SRP72 RNA-binding domain; InterPro: IPR013699 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the RNA binding domain of the SRP72 subunit. This domain is responsible for the binding of SRP72 to the 7S SRP RNA []. ; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle
Probab=83.01 E-value=1 Score=22.42 Aligned_cols=8 Identities=50% Similarity=0.625 Sum_probs=6.5
Q ss_pred cCCCccCC
Q 039984 11 FIPERFLR 18 (93)
Q Consensus 11 F~PeR~l~ 18 (93)
=||||||.
T Consensus 43 PDPERWLP 50 (59)
T PF08492_consen 43 PDPERWLP 50 (59)
T ss_pred CCccccCc
Confidence 48999995
No 34
>PF09201 SRX: SRX; InterPro: IPR015284 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. This entry represents a homologue of the alpha subunit of the SR receptor. Members of this entry consist of a central six-stranded anti-parallel beta-sheet sandwiched by helix alpha1 on one side and helices alpha2-alpha4 on the other. They interact with the small GTPase SR-beta, forming a complex that matches a class of small G protein-effector complexes, including Rap-Raf, Ras-PI3K(gamma), Ras-RalGDS, and Arl2-PDE(delta) []. ; PDB: 1NRJ_A.
Probab=77.86 E-value=3.1 Score=24.41 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=16.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHh
Q 039984 39 ICPGLPLAIRMLYLMLGSLINS 60 (93)
Q Consensus 39 ~C~G~~~a~~~~~~~~~~ll~~ 60 (93)
.|.|++||+..+-.+++.|+..
T Consensus 19 N~~gKKFsE~QiN~FIs~lIts 40 (148)
T PF09201_consen 19 NCLGKKFSETQINAFISHLITS 40 (148)
T ss_dssp ETTS----HHHHHHHHHHHHHS
T ss_pred cccchHHHHHHHHHHHHHHhcC
Confidence 6999999999999999999874
No 35
>PF12444 Sox_N: Sox developmental protein N terminal ; InterPro: IPR022151 This domain family is found in eukaryotes, and is typically between 69 and 88 amino acids in length. The family is found in association with PF00505 from PFAM. There are two conserved sequence motifs: YDW and PVR. This family contains Sox8, Sox9 and Sox10 proteins which have structural similarity. Sox proteins are involved in developmental processes.
Probab=74.10 E-value=2.4 Score=22.69 Aligned_cols=20 Identities=15% Similarity=0.453 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHhceeecCC
Q 039984 48 RMLYLMLGSLINSFDWKLED 67 (93)
Q Consensus 48 ~~~~~~~~~ll~~f~~~~~~ 67 (93)
..|+-++.++|+-|||+|++
T Consensus 60 ~~IrdAVsqVLkGYDWtLVP 79 (84)
T PF12444_consen 60 VCIRDAVSQVLKGYDWTLVP 79 (84)
T ss_pred HHHHHHHHHHhccCCceeee
Confidence 56888999999999999976
No 36
>cd00652 TBP_TLF TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA. New members of the TBP family, called TBP-like proteins (TBLP, TLF, TLP) or TBP-related factors (TRF1, TRF2,TRP), are similar to the core domain of TBPs, with identical or chemically similar amino acids at many
Probab=73.46 E-value=4.8 Score=24.35 Aligned_cols=56 Identities=11% Similarity=0.250 Sum_probs=31.8
Q ss_pred CCcCCCccCCCCCCCCCCCcceeeccCCCCCCCCH-HHHHH-HHHHHHHHHHHhceee
Q 039984 9 HTFIPERFLRSNVDFKGQNFELIPFGAGRRICPGL-PLAIR-MLYLMLGSLINSFDWK 64 (93)
Q Consensus 9 ~~F~PeR~l~~~~~~~~~~~~~~~Fg~G~~~C~G~-~~a~~-~~~~~~~~ll~~f~~~ 64 (93)
-+|+||+|-.---....+....+-|+.|+-.|.|. ....+ ...-.++.+|+++.+.
T Consensus 29 ~~YePe~fpgli~R~~~P~~t~lIf~sGKivitGaks~~~~~~a~~~~~~~L~~~g~~ 86 (174)
T cd00652 29 AEYNPKRFPGVIMRLREPKTTALIFSSGKMVITGAKSEEDAKLAARKYARILQKLGFP 86 (174)
T ss_pred cEECCCccceEEEEcCCCcEEEEEECCCEEEEEecCCHHHHHHHHHHHHHHHHHcCCC
Confidence 37899998432111223455788999999999983 22221 1222334555555543
No 37
>PRK14759 potassium-transporting ATPase subunit F; Provisional
Probab=72.85 E-value=1.5 Score=18.58 Aligned_cols=6 Identities=67% Similarity=1.248 Sum_probs=4.7
Q ss_pred cCCCcc
Q 039984 11 FIPERF 16 (93)
Q Consensus 11 F~PeR~ 16 (93)
++||||
T Consensus 24 lrPErF 29 (29)
T PRK14759 24 LRPERF 29 (29)
T ss_pred hCcccC
Confidence 578887
No 38
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=69.95 E-value=2.1 Score=26.00 Aligned_cols=35 Identities=17% Similarity=0.476 Sum_probs=24.2
Q ss_pred CCcCCCccCCCCCCCCCCCcceeeccCCCCCCCCH
Q 039984 9 HTFIPERFLRSNVDFKGQNFELIPFGAGRRICPGL 43 (93)
Q Consensus 9 ~~F~PeR~l~~~~~~~~~~~~~~~Fg~G~~~C~G~ 43 (93)
-+|+|+||-.---....+....+-|+.|+-.|.|.
T Consensus 29 ~eY~P~~fpgli~Rl~~Pk~t~lIF~SGKiv~tGa 63 (174)
T cd04518 29 AEYNPDQFPGLVYRLEDPKIAALIFRSGKMVCTGA 63 (174)
T ss_pred cEECCCcCcEEEEEccCCcEEEEEECCCeEEEEcc
Confidence 37999998432111233445788999999999985
No 39
>PRK00394 transcription factor; Reviewed
Probab=68.93 E-value=2.4 Score=25.79 Aligned_cols=34 Identities=21% Similarity=0.508 Sum_probs=23.6
Q ss_pred CCcCCCccCCCCCCCCCCCcceeeccCCCCCCCC
Q 039984 9 HTFIPERFLRSNVDFKGQNFELIPFGAGRRICPG 42 (93)
Q Consensus 9 ~~F~PeR~l~~~~~~~~~~~~~~~Fg~G~~~C~G 42 (93)
-+|+||||-.---....+....+-|..|+-.|.|
T Consensus 28 ~eYePe~fpgli~Rl~~Pk~t~lIf~sGKiv~tG 61 (179)
T PRK00394 28 AEYNPEQFPGLVYRLEDPKIAALIFRSGKVVCTG 61 (179)
T ss_pred ceeCcccCceEEEEecCCceEEEEEcCCcEEEEc
Confidence 4799999843211223344578899999999998
No 40
>PF09604 Potass_KdpF: F subunit of K+-transporting ATPase (Potass_KdpF); InterPro: IPR011726 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the F subunit (KdpF) of a P-type K+-translocating ATPase (Kdp). KdpF is a very small integral membrane peptide. The kdpABC operon of Escherichia coli codes for the high affinity K+-translocating Kdp complex []. KdpF is found upstream of the KdpA subunit (IPR004623 from INTERPRO). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation. More information about this protein can be found at Protein of the Month: ATP Synthases [].
Probab=68.41 E-value=2.1 Score=17.47 Aligned_cols=6 Identities=67% Similarity=1.248 Sum_probs=4.3
Q ss_pred cCCCcc
Q 039984 11 FIPERF 16 (93)
Q Consensus 11 F~PeR~ 16 (93)
++||||
T Consensus 20 l~PErF 25 (25)
T PF09604_consen 20 LRPERF 25 (25)
T ss_pred hCcccC
Confidence 468876
No 41
>COG2101 SPT15 TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=65.03 E-value=2.2 Score=26.00 Aligned_cols=35 Identities=20% Similarity=0.445 Sum_probs=24.7
Q ss_pred CcCCCccCCCCCCCCCCCcceeeccCCCCCCCCHH
Q 039984 10 TFIPERFLRSNVDFKGQNFELIPFGAGRRICPGLP 44 (93)
Q Consensus 10 ~F~PeR~l~~~~~~~~~~~~~~~Fg~G~~~C~G~~ 44 (93)
+|+|++|=.---....++.+.+-|..|+-.|.|.+
T Consensus 36 eYnP~qFpGlv~Rl~ePk~a~LIF~SGK~VcTGaK 70 (185)
T COG2101 36 EYNPEQFPGLVYRLEEPKTAALIFRSGKVVCTGAK 70 (185)
T ss_pred ccCHhHCCeeEEEecCCcceEEEEecCcEEEeccC
Confidence 68899884211123345558899999999999965
No 42
>KOG3506 consensus 40S ribosomal protein S29 [Translation, ribosomal structure and biogenesis]
Probab=62.49 E-value=3.5 Score=20.15 Aligned_cols=11 Identities=45% Similarity=0.918 Sum_probs=9.1
Q ss_pred eeccCCCCCCC
Q 039984 31 IPFGAGRRICP 41 (93)
Q Consensus 31 ~~Fg~G~~~C~ 41 (93)
-+||.|.|.|-
T Consensus 12 ~kfg~GsrsC~ 22 (56)
T KOG3506|consen 12 RKFGQGSRSCR 22 (56)
T ss_pred cccCCCCccee
Confidence 37999999985
No 43
>KOG3302 consensus TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=60.04 E-value=5 Score=24.87 Aligned_cols=33 Identities=21% Similarity=0.566 Sum_probs=20.5
Q ss_pred CcCCCccCCCCCCCCCCCcceeeccCCCCCCCC
Q 039984 10 TFIPERFLRSNVDFKGQNFELIPFGAGRRICPG 42 (93)
Q Consensus 10 ~F~PeR~l~~~~~~~~~~~~~~~Fg~G~~~C~G 42 (93)
+|+|.||-.=--....+....+-|+.|+-.|.|
T Consensus 51 ey~Pk~~~aVimrir~P~~ta~I~ssGKi~ctg 83 (200)
T KOG3302|consen 51 EYNPKRFAAVIMRIRSPRTTALIFSSGKIVCTG 83 (200)
T ss_pred ccCcccccEEEEEEcCCceEEEEecCCcEEEec
Confidence 688888842100112233356779999999997
No 44
>PLN00062 TATA-box-binding protein; Provisional
Probab=57.87 E-value=4.1 Score=24.85 Aligned_cols=55 Identities=15% Similarity=0.337 Sum_probs=31.7
Q ss_pred CCcCCCccCCCCCCCCCCCcceeeccCCCCCCCCHH-HHHH-HHHHHHHHHHHhcee
Q 039984 9 HTFIPERFLRSNVDFKGQNFELIPFGAGRRICPGLP-LAIR-MLYLMLGSLINSFDW 63 (93)
Q Consensus 9 ~~F~PeR~l~~~~~~~~~~~~~~~Fg~G~~~C~G~~-~a~~-~~~~~~~~ll~~f~~ 63 (93)
-+|+||+|=.---....+....+-|+.|+-.|.|.. ...+ ...-.++.+|++..+
T Consensus 29 ~eYePe~fpgli~Rl~~Pk~t~lIF~SGKiviTGaks~e~a~~a~~~~~~~L~~lg~ 85 (179)
T PLN00062 29 AEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKSEHDSKLAARKYARIIQKLGF 85 (179)
T ss_pred CEECCccCcEEEEEeCCCcEEEEEECCCeEEEEecCCHHHHHHHHHHHHHHHHHcCC
Confidence 478999984211112234457889999999999842 2222 122334455655544
No 45
>TIGR02115 potass_kdpF K+-transporting ATPase, KdpF subunit. This model describes a very small integral membrane peptide KdpF, a subunit of the K(+)-translocating Kdp complex. It is found upstream of the KdpA subunit (TIGR00680). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation.
Probab=56.84 E-value=2.6 Score=17.41 Aligned_cols=7 Identities=57% Similarity=1.051 Sum_probs=5.0
Q ss_pred cCCCccC
Q 039984 11 FIPERFL 17 (93)
Q Consensus 11 F~PeR~l 17 (93)
++||||.
T Consensus 19 l~PErF~ 25 (26)
T TIGR02115 19 LRPERFX 25 (26)
T ss_pred hCHHhcC
Confidence 5788874
No 46
>PF00352 TBP: Transcription factor TFIID (or TATA-binding protein, TBP); InterPro: IPR000814 The TATA-box binding protein (TBP) is required for the initiation of transcription by RNA polymerases I, II and III, from promoters with or without a TATA box [, ]. TBP associates with a host of factors, including the general transcription factors TFIIA, -B, -D, -E, and -H, to form huge multi-subunit pre-initiation complexes on the core promoter. Through its association with different transcription factors, TBP can initiate transcription from different RNA polymerases. There are several related TBPs, including TBP-like (TBPL) proteins []. The C-terminal core of TBP (~180 residues) is highly conserved and contains two 77-amino acid repeats that produce a saddle-shaped structure that straddles the DNA; this region binds to the TATA box and interacts with transcription factors and regulatory proteins []. By contrast, the N-terminal region varies in both length and sequence.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0006367 transcription initiation from RNA polymerase II promoter; PDB: 1D3U_A 1PCZ_B 1AIS_A 1NGM_A 1TBP_A 1TBA_B 1YTB_A 1RM1_A 1YTF_A 1NH2_A ....
Probab=55.54 E-value=5.6 Score=20.99 Aligned_cols=34 Identities=21% Similarity=0.430 Sum_probs=21.9
Q ss_pred CcCCCccCCCCCCCCCCCcceeeccCCCCCCCCH
Q 039984 10 TFIPERFLRSNVDFKGQNFELIPFGAGRRICPGL 43 (93)
Q Consensus 10 ~F~PeR~l~~~~~~~~~~~~~~~Fg~G~~~C~G~ 43 (93)
+|+||+|-.---....+....+-|..|+-.|.|.
T Consensus 32 ~YePe~fpgl~~r~~~p~~t~~IF~sGki~itGa 65 (86)
T PF00352_consen 32 EYEPERFPGLIYRLRNPKATVLIFSSGKIVITGA 65 (86)
T ss_dssp EEETTTESSEEEEETTTTEEEEEETTSEEEEEEE
T ss_pred EEeeccCCeEEEeecCCcEEEEEEcCCEEEEEec
Confidence 5788877321111223345788899999999985
No 47
>cd04516 TBP_eukaryotes eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=54.83 E-value=4.9 Score=24.37 Aligned_cols=56 Identities=14% Similarity=0.329 Sum_probs=31.4
Q ss_pred CCcCCCccCCCCCCCCCCCcceeeccCCCCCCCCHH-HHHH-HHHHHHHHHHHhceee
Q 039984 9 HTFIPERFLRSNVDFKGQNFELIPFGAGRRICPGLP-LAIR-MLYLMLGSLINSFDWK 64 (93)
Q Consensus 9 ~~F~PeR~l~~~~~~~~~~~~~~~Fg~G~~~C~G~~-~a~~-~~~~~~~~ll~~f~~~ 64 (93)
-+|+||+|=.---....+....+-|+.|+-.|.|.. .... ...--++.+|++..+.
T Consensus 29 ~eYePe~fpgli~Rl~~Pk~t~lIF~SGKiviTGaks~e~a~~a~~~i~~~L~~~g~~ 86 (174)
T cd04516 29 AEYNPKRFAAVIMRIREPKTTALIFSSGKMVCTGAKSEDDSKLAARKYARIIQKLGFP 86 (174)
T ss_pred CEECCccCcEEEEEeCCCcEEEEEECCCeEEEEecCCHHHHHHHHHHHHHHHHHcCCC
Confidence 478999884211112234446789999999999832 2211 1222344556655543
No 48
>PF14510 ABC_trans_N: ABC-transporter extracellular N-terminal
Probab=39.39 E-value=9.2 Score=20.08 Aligned_cols=17 Identities=29% Similarity=0.325 Sum_probs=12.7
Q ss_pred CCCCCCCCCcCCCccCC
Q 039984 2 ESTWDNPHTFIPERFLR 18 (93)
Q Consensus 2 p~~~~~p~~F~PeR~l~ 18 (93)
+.+-++.+.|+.++|+.
T Consensus 25 ~~ldp~s~~Fdl~~~lr 41 (85)
T PF14510_consen 25 SSLDPDSDDFDLRRWLR 41 (85)
T ss_pred CCCCCCCccccHHHHHH
Confidence 44456777899999985
No 49
>PHA03162 hypothetical protein; Provisional
Probab=34.04 E-value=31 Score=20.07 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=17.2
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHH
Q 039984 34 GAGRRICPGLPLAIRMLYLMLGSL 57 (93)
Q Consensus 34 g~G~~~C~G~~~a~~~~~~~~~~l 57 (93)
++|.+.|+++....-++..-++.|
T Consensus 2 ~~~~k~~pk~~~tmEeLaaeL~kL 25 (135)
T PHA03162 2 AGGSKKCPKAQPTMEDLAAEIAKL 25 (135)
T ss_pred CCCcCCCCccCCCHHHHHHHHHHH
Confidence 468899999887777666655543
No 50
>cd04517 TLF TBP-like factors (TLF; also called TLP, TRF, TRP), which are found in most metazoans. TLFs and TBPs have well-conserved core domains; however, they only share about 60% similarity. TLFs, like TBPs, interact with TFIIA and TFIIB, which are part of the basal transcription machinery. Yet, in contrast to TBPs, TLFs seem not to interact with the TATA-box and even have a negative effect on the transcription of TATA-containing promoters. Recent results indicate that TLFs are involved in the transcription via TATA-less promoters.
Probab=33.11 E-value=8.3 Score=23.38 Aligned_cols=36 Identities=19% Similarity=0.238 Sum_probs=23.3
Q ss_pred CCcCCCccCCCCCCCCCCCcceeeccCCCCCCCCHH
Q 039984 9 HTFIPERFLRSNVDFKGQNFELIPFGAGRRICPGLP 44 (93)
Q Consensus 9 ~~F~PeR~l~~~~~~~~~~~~~~~Fg~G~~~C~G~~ 44 (93)
-+|+||+|-.---....+....+-|+.|.-.|.|..
T Consensus 121 ~~YePE~fPgliyr~~~p~~t~lIF~sGkivitGak 156 (174)
T cd04517 121 ASYEPELHPGVVYRITGPRATLSIFSTGSVTVTGAR 156 (174)
T ss_pred cEeCCccCCEEEEEECCCcEEEEEeCCCEEEEEecC
Confidence 468888874211112224457889999999999843
No 51
>PF02663 FmdE: FmdE, Molybdenum formylmethanofuran dehydrogenase operon ; InterPro: IPR003814 Formylmethanofuran dehydrogenases (1.2.99.5 from EC) is found in methanogenic and sulphate-reducing archaea. The enzyme contains molybdenum or tungsten, a molybdopterin guanine dinuceotide cofactor (MGD) and iron-sulphur clusters []. It catalyses the reversible reduction of CO2 and methanofuran via N-carboxymethanofuran (carbamate) to N-formylmethanofuran, the first and second steps in methanogenesis from CO2 [, ]. This reaction is important for the reduction of CO2 to methane, in autotrophic CO2 fixation, and in CO2 formation from reduced C1 units []. The synthesis of formylmethanofuran is crucial for the energy metabolism of archaea. Methanogenic archaea derives the energy for autrophic growth from the reduction of CO2 with molecular hydrogen as the electron donor []. The process of methanogenesis consists of a series of reduction reactions at which the one-carbon unit derived from CO2 is bound to C1 carriers. There are two isoenzymes of formylmethanofuran dehydrogenase: a tungsten-containing isoenzyme (Fwd) and a molybdenum-containing isoenzyme (Fmd). The tungsten isoenzyme is constitutively transcribed, whereas transcription of the molybdenum operon is induced by molybdate []. The archaea Methanobacterium thermoautotrophicum contains a 4-subunit (FwdA, FwdB, FwdC, FwdD) tungsten formylmethanofuran dehydrogenase and a 3-subunit (FmdA, FmdB, FmdC) molybdenum formylmethanofuran dehydrogenase []. This entry represents subunit E of formylmethanofuran dehydrogenase enyzmes. The enzyme from Methanosarcina barkeri is a molybdenum iron-sulphur protein involved in methanogenesis. Subunit E protein is co-expressed with the enzyme but fails to co-purify and thus its function is unknown [].; PDB: 2GVI_A 3D00_A 2GLZ_A.
Probab=32.79 E-value=36 Score=19.31 Aligned_cols=20 Identities=45% Similarity=0.826 Sum_probs=14.7
Q ss_pred CCCCCHHHHHHHHHHHHHHH
Q 039984 38 RICPGLPLAIRMLYLMLGSL 57 (93)
Q Consensus 38 ~~C~G~~~a~~~~~~~~~~l 57 (93)
|.|+|..++......++..|
T Consensus 5 H~Cpgl~~G~r~~~~a~~~l 24 (131)
T PF02663_consen 5 HLCPGLALGYRMAKYALEEL 24 (131)
T ss_dssp S--HHHHHHHHHHHHHHHHH
T ss_pred CcCccHHHHHHHHHHHHHHc
Confidence 78999999988888777665
No 52
>PF11297 DUF3098: Protein of unknown function (DUF3098); InterPro: IPR021448 This bacterial family of proteins has no known function.
Probab=31.15 E-value=26 Score=18.02 Aligned_cols=12 Identities=42% Similarity=0.908 Sum_probs=8.6
Q ss_pred CCCCCcCCCccC
Q 039984 6 DNPHTFIPERFL 17 (93)
Q Consensus 6 ~~p~~F~PeR~l 17 (93)
.||..||||=|.
T Consensus 31 ~dp~~fn~~Ifs 42 (69)
T PF11297_consen 31 DDPNVFNPDIFS 42 (69)
T ss_pred CCccccCccccc
Confidence 577888887653
No 53
>PTZ00218 40S ribosomal protein S29; Provisional
Probab=29.50 E-value=24 Score=17.22 Aligned_cols=10 Identities=40% Similarity=1.039 Sum_probs=8.4
Q ss_pred eccCCCCCCC
Q 039984 32 PFGAGRRICP 41 (93)
Q Consensus 32 ~Fg~G~~~C~ 41 (93)
-||.|.|.|.
T Consensus 11 ~yGkGsr~C~ 20 (54)
T PTZ00218 11 TYGKGSRQCR 20 (54)
T ss_pred cCCCCCCeee
Confidence 4899999986
No 54
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=28.19 E-value=21 Score=22.32 Aligned_cols=26 Identities=19% Similarity=0.169 Sum_probs=21.9
Q ss_pred ceeeccCCCCCCCCHHHHHHHHHHHH
Q 039984 29 ELIPFGAGRRICPGLPLAIRMLYLML 54 (93)
Q Consensus 29 ~~~~Fg~G~~~C~G~~~a~~~~~~~~ 54 (93)
..+-.|.|+-.|+|+.||...+.+-.
T Consensus 41 kv~V~G~GkSG~Igkk~Aa~L~s~G~ 66 (202)
T COG0794 41 KVFVTGVGKSGLIGKKFAARLASTGT 66 (202)
T ss_pred cEEEEcCChhHHHHHHHHHHHHccCC
Confidence 57788999999999999988777654
No 55
>PF07886 BA14K: BA14K-like protein; InterPro: IPR012413 The sequences found in this family are similar to the BA14K proteins expressed by Brucella abortus (Q44701 from SWISSPROT) and by Brucella suis (Q8FVU0 from SWISSPROT). BA14K was found to be strongly immunoreactive; it induces both humoral and cellular responses in hosts throughout the infective process [].
Probab=26.51 E-value=68 Score=13.70 Aligned_cols=14 Identities=29% Similarity=0.657 Sum_probs=11.4
Q ss_pred cceeeccCCCCCCC
Q 039984 28 FELIPFGAGRRICP 41 (93)
Q Consensus 28 ~~~~~Fg~G~~~C~ 41 (93)
..++++.+..|.|.
T Consensus 18 ~Ty~~~~G~r~~C~ 31 (31)
T PF07886_consen 18 NTYQPYDGPRRFCR 31 (31)
T ss_pred CcEeCCCCccccCc
Confidence 37999998888884
No 56
>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis]
Probab=20.86 E-value=53 Score=20.45 Aligned_cols=19 Identities=26% Similarity=0.716 Sum_probs=14.3
Q ss_pred CCCCCCCCCcCC-CccCCCC
Q 039984 2 ESTWDNPHTFIP-ERFLRSN 20 (93)
Q Consensus 2 p~~~~~p~~F~P-eR~l~~~ 20 (93)
.++|-+|+++.| +|||...
T Consensus 123 ~k~fi~p~KllPl~RFLP~p 142 (215)
T KOG3262|consen 123 DKLFIDPDKLLPLDRFLPQP 142 (215)
T ss_pred CeEEecccccCcHhhcCCCC
Confidence 356788999888 7998644
No 57
>PF14459 Prok-E2_C: Prokaryotic E2 family C
Probab=20.31 E-value=28 Score=19.69 Aligned_cols=16 Identities=38% Similarity=0.559 Sum_probs=13.2
Q ss_pred cceeeccCCCCCCCCH
Q 039984 28 FELIPFGAGRRICPGL 43 (93)
Q Consensus 28 ~~~~~Fg~G~~~C~G~ 43 (93)
...+|||.|.-.|+|.
T Consensus 105 ss~~p~GaGaAaC~aA 120 (131)
T PF14459_consen 105 SSNNPFGAGAAACFAA 120 (131)
T ss_pred cccCCcCccHHHHHHH
Confidence 3678999999999874
No 58
>PHA02450 hypothetical protein
Probab=20.26 E-value=60 Score=15.27 Aligned_cols=9 Identities=33% Similarity=0.508 Sum_probs=6.8
Q ss_pred CCCCCcCCC
Q 039984 6 DNPHTFIPE 14 (93)
Q Consensus 6 ~~p~~F~Pe 14 (93)
++|.+|+|-
T Consensus 29 ~epg~fdpf 37 (53)
T PHA02450 29 AEPGQFDPF 37 (53)
T ss_pred CCCCccCCC
Confidence 678888874
Done!