BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039985
(357 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AIP|A Chain A, The Frpb Iron Transporter From Neisseria Meningitidis
(f3-3 Variant)
pdb|4AIP|B Chain B, The Frpb Iron Transporter From Neisseria Meningitidis
(f3-3 Variant)
pdb|4AIP|C Chain C, The Frpb Iron Transporter From Neisseria Meningitidis
(f3-3 Variant)
Length = 742
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 177 DKNWAIRLTLLFAASNGIT 195
DKNW +RL FA++NG++
Sbjct: 182 DKNWGVRLNSGFASNNGVS 200
>pdb|2JKA|A Chain A, Native Structure Of A Family 97 Alpha-glucosidase From
Bacteroides Thetaiotaomicron
pdb|2JKA|B Chain B, Native Structure Of A Family 97 Alpha-glucosidase From
Bacteroides Thetaiotaomicron
pdb|2JKE|A Chain A, Structure Of A Family 97 Alpha-glucosidase From
Bacteroides Thetaiotaomicron In Complex With
Deoxynojirimycin
pdb|2JKE|B Chain B, Structure Of A Family 97 Alpha-glucosidase From
Bacteroides Thetaiotaomicron In Complex With
Deoxynojirimycin
pdb|2JKP|A Chain A, Structure Of A Family 97 Alpha-Glucosidase From
Bacteroides Thetaiotaomicron In Complex With
Castanospermine
pdb|2JKP|B Chain B, Structure Of A Family 97 Alpha-Glucosidase From
Bacteroides Thetaiotaomicron In Complex With
Castanospermine
Length = 727
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 110 GKGNMLKAKKLVDFSAGELDELLLKKDCTNKGNMIKAKKFVDFSAA 155
GKG+ +L GE D K + + N K+++DF+AA
Sbjct: 326 GKGSWAYTDELTSVKLGETDYSKTKPNGKHSANTANVKRYIDFAAA 371
>pdb|2D73|A Chain A, Crystal Structure Analysis Of Susb
pdb|2D73|B Chain B, Crystal Structure Analysis Of Susb
pdb|2ZQ0|A Chain A, Crystal Structure Of Susb Complexed With Acarbose
pdb|2ZQ0|B Chain B, Crystal Structure Of Susb Complexed With Acarbose
Length = 738
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 110 GKGNMLKAKKLVDFSAGELDELLLKKDCTNKGNMIKAKKFVDFSAA 155
GKG+ +L GE D K + + N K+++DF+AA
Sbjct: 337 GKGSWAYTDELTSVKLGETDYSKTKPNGKHSANTANVKRYIDFAAA 382
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 7/86 (8%)
Query: 183 RLTLLFAASNGITEILKEIIHQHPQAILLDNLNEKEQNILHVAVKRRQYKVFELITKEMQ 242
R L+ AA N E +K +I L+D + + LH+A K+ Y+V + + Q
Sbjct: 45 RTPLMEAAENNHLEAVKYLI---KAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQ 101
Query: 243 LSVPKWASRIDKKGYTLLHHVADMKH 268
+ V + D G+T + + KH
Sbjct: 102 MDV----NCQDDGGWTPMIWATEYKH 123
>pdb|2BB6|A Chain A, Structure Of Cobalamin-Complexed Bovine Transcobalamin In
Monoclinic Crystal Form
pdb|2BB6|B Chain B, Structure Of Cobalamin-Complexed Bovine Transcobalamin In
Monoclinic Crystal Form
pdb|2BB6|C Chain C, Structure Of Cobalamin-Complexed Bovine Transcobalamin In
Monoclinic Crystal Form
pdb|2BB6|D Chain D, Structure Of Cobalamin-Complexed Bovine Transcobalamin In
Monoclinic Crystal Form
pdb|2BBC|A Chain A, Structure Of Cobalamin-Complexed Bovine Transcobalamin In
Trigonal Crystal Form
pdb|2V3N|A Chain A, Crystallographic Analysis Of Upper Axial Ligand
Substitutions In Cobalamin Bound To Transcobalamin
pdb|2V3P|A Chain A, Crystallographic Analysis Of Beta-Axial Ligand
Substitutions In Cobalamin Bound To Transcobalamin
Length = 414
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 211 LDNLNEKEQNILHVAVKRRQYKVFELITKE 240
L NLN K++N +++A+KR Q K+ + T E
Sbjct: 193 LSNLNPKQRNRINLALKRVQEKILKAQTPE 222
>pdb|3I7M|A Chain A, N-Terminal Domain Of Xaa-Pro Dipeptidase From
Lactobacillus Brevis
Length = 140
Score = 27.7 bits (60), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 27/52 (51%)
Query: 197 ILKEIIHQHPQAILLDNLNEKEQNILHVAVKRRQYKVFELITKEMQLSVPKW 248
++ + H++P A + D + ++ N HVA+++ Q +V Q S P +
Sbjct: 75 VIGYLDHENPWAXIADQVKQRHVNPEHVAIEKGQLQVARXEALAAQFSAPSF 126
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,947,108
Number of Sequences: 62578
Number of extensions: 321688
Number of successful extensions: 915
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 910
Number of HSP's gapped (non-prelim): 32
length of query: 357
length of database: 14,973,337
effective HSP length: 100
effective length of query: 257
effective length of database: 8,715,537
effective search space: 2239893009
effective search space used: 2239893009
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)