BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039985
(357 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9C7A2|Y3236_ARATH Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana
GN=At3g12360 PE=2 SV=1
Length = 590
Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 93/216 (43%), Gaps = 53/216 (24%)
Query: 186 LLFAASNGITEILKEIIHQHPQAILLDNLNEKEQNILHVAVKRRQYKVFELITKEMQLSV 245
L AA G E++K ++ + PQ L +++K Q LH+AVK + +V +L+ +
Sbjct: 236 LHLAARQGHVEVIKALLSKDPQ--LARRIDKKGQTALHMAVKGQSSEVVKLLLD----AD 289
Query: 246 PKWASRIDKKGYTLLHHVADMKHYKEG---------------TRP-GPVLQFQEELQLFE 289
P + DK T LH VA K E TR L E L L E
Sbjct: 290 PAIVMQPDKSCNTALH-VATRKKRAEIVELLLSLPDTNANTLTRDHKTALDIAEGLPLSE 348
Query: 290 ---HVKEIMPRHYAMHRDEKN------------------------KMTASDLFNLTHEDQ 322
++KE + R A+ +E N K T ++ N++ E
Sbjct: 349 ESSYIKECLARSGALRANELNQPRDELRSTVTQIKNDVHIQLEQTKRTNKNVHNISKE-- 406
Query: 323 LRKA-QEWIKETSQACSVLAILIATVVFTAAFTIPG 357
LRK +E I + + +V+A+L ATV F A FT+PG
Sbjct: 407 LRKLHREGINNATNSVTVVAVLFATVAFAAIFTVPG 442
>sp|Q9ZU96|Y2168_ARATH Ankyrin repeat-containing protein At2g01680 OS=Arabidopsis thaliana
GN=At2g01680 PE=1 SV=1
Length = 532
Score = 38.9 bits (89), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 91/212 (42%), Gaps = 49/212 (23%)
Query: 189 AASNGITEILKEIIHQHPQAILLDNLNEKEQNILHVAVKRRQYKVFELITKEMQLSVPKW 248
A G+ I+K +I + A ++ ++K Q LH+AVK R +V E I +Q
Sbjct: 169 AGRYGLLRIVKALIEK--DAAIVGVKDKKGQTALHMAVKGRSLEVVEEI---LQADYTIL 223
Query: 249 ASRIDKKGYTLLH--------------------HVADMKHYKEGTRP-GPVLQFQEE-LQ 286
R D+KG T LH V + + KE LQ+ E L+
Sbjct: 224 NER-DRKGNTALHIATRKARPQITSLLLTFTAIEVNAINNQKETAMDLADKLQYSESALE 282
Query: 287 LFEHVKEIMPRH-YAMHRDEKNKMTASDLFNLTHEDQ-------------------LRKA 326
+ E + E +H + R+++ + + ++ HE Q LRK
Sbjct: 283 INEALVEAGAKHGRFIGREDEARALKRAVSDIKHEVQSQLLQNEKTNRRVSGIAKELRKL 342
Query: 327 -QEWIKETSQACSVLAILIATVVFTAAFTIPG 357
+E ++ T+ + +V+A+L A++ F A F +PG
Sbjct: 343 HREAVQNTTNSITVVAVLFASIAFLAIFNLPG 374
>sp|Q804S5|MIB1_DANRE E3 ubiquitin-protein ligase mib1 OS=Danio rerio GN=mib1 PE=1 SV=1
Length = 1030
Score = 37.7 bits (86), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 60/127 (47%), Gaps = 22/127 (17%)
Query: 171 VPNHKKDKNWAIRLTLLFAASNGITEILKEIIHQHPQAILLDNLNEKEQNILHVAVKRRQ 230
+ + KKD + L AA N E+ + ++HQ + + N+N +Q LH+AV+R+
Sbjct: 624 IVDEKKDDGYT---ALHLAALNNHVEVAELLVHQGNANLDVQNVN--QQTALHLAVERQH 678
Query: 231 YKVFELITK-EMQLSVPKWASRIDKKGYTLLHHVADMKHYKEGTRPGPVLQFQEELQLFE 289
++ L+ + E +L V DK G T LH ++H+ L +LQ +
Sbjct: 679 TQIVRLLVRAEAKLDVQ------DKDGDTPLHEA--LRHH--------TLSQLRQLQDMQ 722
Query: 290 HVKEIMP 296
V ++ P
Sbjct: 723 DVSKVEP 729
>sp|Q6GNY1|MIB1_XENLA E3 ubiquitin-protein ligase mib1 OS=Xenopus laevis GN=mib1 PE=2
SV=1
Length = 1011
Score = 37.4 bits (85), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 14/100 (14%)
Query: 171 VPNHKKDKNWAIRLTLLFAASNGITEILKEIIHQHPQAILLDNLNEKEQNILHVAVKRRQ 230
+ + KKD + L AA N E+ + ++HQ + + N+N +Q LH+AV+R+
Sbjct: 624 IVDEKKDDGYT---ALHLAALNNHVEVAELLVHQGSANLDIQNVN--QQTALHLAVERQH 678
Query: 231 YKVFELITK-EMQLSVPKWASRIDKKGYTLLHHVADMKHY 269
++ L+ + E +L + DK G T LH ++H+
Sbjct: 679 TQIVRLLVRAEAKLDIQ------DKDGDTPLHEA--LRHH 710
>sp|P36362|CHIT_MANSE Endochitinase OS=Manduca sexta PE=2 SV=1
Length = 554
Score = 36.2 bits (82), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 7/90 (7%)
Query: 16 IKKIWMKKQMHKNANKLLKKLVKEETLCLGDGEQNPEISLLSPESSSTSLPNPEISSSNP 75
IK W+K++ + A + + LC GE+NP I +L SS ++P P ++ P
Sbjct: 354 IKMNWIKQKGYLGAMTWAIDMDDFQGLC---GEKNPLIKILHKHMSSYTVPPPHTENTTP 410
Query: 76 ESSTSSLP----NPEIFSPDPESSTTSPAN 101
+ P +P P P ++T PA+
Sbjct: 411 TPEWARPPSTPSDPSEGDPIPTTTTAKPAS 440
>sp|Q86YT6|MIB1_HUMAN E3 ubiquitin-protein ligase MIB1 OS=Homo sapiens GN=MIB1 PE=1 SV=1
Length = 1006
Score = 34.7 bits (78), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 50/100 (50%), Gaps = 14/100 (14%)
Query: 171 VPNHKKDKNWAIRLTLLFAASNGITEILKEIIHQHPQAILLDNLNEKEQNILHVAVKRRQ 230
+ + KKD + L AA N E+ + ++HQ + + N+N +Q LH+AV+R+
Sbjct: 624 IVDEKKDDGYT---ALHLAALNNHVEVAELLVHQGNANLDIQNVN--QQTALHLAVERQH 678
Query: 231 YKVFELITKE-MQLSVPKWASRIDKKGYTLLHHVADMKHY 269
++ L+ + +L + DK G T LH ++H+
Sbjct: 679 TQIVRLLVRAGAKLDIQ------DKDGDTPLHEA--LRHH 710
>sp|Q80SY4|MIB1_MOUSE E3 ubiquitin-protein ligase MIB1 OS=Mus musculus GN=Mib1 PE=1 SV=1
Length = 1006
Score = 34.7 bits (78), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 50/100 (50%), Gaps = 14/100 (14%)
Query: 171 VPNHKKDKNWAIRLTLLFAASNGITEILKEIIHQHPQAILLDNLNEKEQNILHVAVKRRQ 230
+ + KKD + L AA N E+ + ++HQ + + N+N +Q LH+AV+R+
Sbjct: 624 IVDEKKDDGYT---ALHLAALNNHVEVAELLVHQGNANLDIQNVN--QQTALHLAVERQH 678
Query: 231 YKVFELITKE-MQLSVPKWASRIDKKGYTLLHHVADMKHY 269
++ L+ + +L + DK G T LH ++H+
Sbjct: 679 TQIVRLLVRAGAKLDIQ------DKDGDTPLHEA--LRHH 710
>sp|Q7Z3E5|ARMC9_HUMAN LisH domain-containing protein ARMC9 OS=Homo sapiens GN=ARMC9 PE=1
SV=2
Length = 817
Score = 34.3 bits (77), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 68/153 (44%), Gaps = 13/153 (8%)
Query: 147 KKFVDFSAAELVELFVKKDCTIKGVP-------NHKKDKNWAIRLTLLFAASNGITEILK 199
K+++DF+ E K+C IKG P + + K+ I+ L+ A NG ++
Sbjct: 16 KEYLDFAEFEDTLKTFSKECKIKGKPLCKTVGGSFRDSKSLTIQKDLVAAFDNGDQKVFF 75
Query: 200 EIIHQHPQAILL--DNLNEKEQNILHV--AVKRRQYKVFELITKEMQLSVPKWASRIDKK 255
++ +H + + D+ +K + LH+ A+ +Y V +E+ + + + ++ K
Sbjct: 76 DLWEEHISSSIRDGDSFAQKLEFYLHIHFAIYLLKYSVGRPDKEELDEKISYFKTYLETK 135
Query: 256 GYTLLHHVADMKHYKEGTRPGPVLQ--FQEELQ 286
G L + Y P P++ F+E Q
Sbjct: 136 GAALSQTTEFLPFYALPFVPNPMVHPSFKELFQ 168
>sp|Q8CDK3|IQUB_MOUSE IQ and ubiquitin-like domain-containing protein OS=Mus musculus
GN=Iqub PE=2 SV=2
Length = 788
Score = 34.3 bits (77), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 18/86 (20%)
Query: 48 EQNPEISLLSPESSSTSLPNPEISSSNPESSTSSLPNPEIFSPDPESSTTSPANISTISL 107
EQ+ E+ L+ ES + E S S P+S S P E+ SL
Sbjct: 40 EQDDEVQELTTESEENVERHSEFSLSTPKSDDSK-PREEV-----------------TSL 81
Query: 108 GLGKGNMLKAKKLVDFSAGELDELLL 133
G G+ + +L+D+ GE DELL
Sbjct: 82 GSASGSQDQDYRLLDYQKGEDDELLF 107
>sp|Q6AWW5|Y5262_ARATH Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana
GN=At5g02620 PE=1 SV=1
Length = 524
Score = 34.3 bits (77), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 93/214 (43%), Gaps = 51/214 (23%)
Query: 189 AASNGITEILKEIIHQHPQAILLDNLNEKEQNILHVAVKRRQYKVFELITKEMQLSVPKW 248
AA NG T I+K++I + +A ++ +++K Q LH+AVK + ++ +++ E S+
Sbjct: 166 AARNGHTVIVKKLIEK--KAGMVTRVDKKGQTALHMAVKGQNTEIVDVLM-EADGSLINS 222
Query: 249 ASRIDKKGYTLLHH---------VADMKHYKEGTRPGPVLQFQEELQLFEH--VKEIMP- 296
A D KG T LH V + Y E +R + L + E + EI+P
Sbjct: 223 A---DNKGNTPLHIAVRKNRAEIVQTVLKYCEVSRVAVNKSGETALDIAEKTGLHEIVPL 279
Query: 297 -RHYAMHR---------------DEKNKMTASDLFNLTHE--DQLRKAQEWIKETSQ--- 335
+ M K K T S++ + H +Q + + I+ ++
Sbjct: 280 LQKIGMQNARSIKPAEKVEPSGSSRKLKETVSEIGHEVHTQLEQTGRTRREIQGIAKRVN 339
Query: 336 ------------ACSVLAILIATVVFTAAFTIPG 357
+ +++AILIATV F A F +PG
Sbjct: 340 KMHTEGLNNAINSTTLVAILIATVAFAAIFNVPG 373
>sp|B9M0L9|HIS4_GEOSF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]
imidazole-4-carboxamide isomerase OS=Geobacter sp.
(strain FRC-32) GN=hisA PE=3 SV=1
Length = 245
Score = 32.7 bits (73), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 146 AKKFVDFSAAELVELFVKKDCTIKGVPNHKKDKNWAIRLTLLFAASNGITEI 197
AKKF F A +V + +D +KG PN + +N A +T+ AS G++ +
Sbjct: 152 AKKFEGFGVAAIVYTDISRDGMMKG-PNIEATRNLAEAITIPVIASGGVSAL 202
>sp|Q97AH7|SYA_THEVO Alanine--tRNA ligase OS=Thermoplasma volcanium (strain ATCC 51530 /
DSM 4299 / JCM 9571 / NBRC 15438 / GSS1) GN=alaS PE=3
SV=2
Length = 876
Score = 32.3 bits (72), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 81/186 (43%), Gaps = 32/186 (17%)
Query: 101 NISTISLGLGKGNMLKAKKLVDFSAGELDELLLKKDCT--NKGNMIKAKKFVDFSAAELV 158
NI T +L M + LV +S G +E++L K G + +F ++
Sbjct: 492 NIETRTLYYDDSTMREFTGLVMYSKG--NEVILDKTAFYPEGGGQPADHGYFEFKGKKIN 549
Query: 159 ELFVKK---------------DCTIKGVPNHKKDKNWAIRLTLLFAASNGITEILKEIIH 203
L V+K +KGV + ++ RL + A++ + +L++I+
Sbjct: 550 VLDVQKHGNAIVHKLDGEIPEGVRVKGVIDWERRS----RLMVHHTATHLLLGVLRDILG 605
Query: 204 QHP-QAILLDNLNEKEQNILHV------AVKRRQYKVFELITKEMQLSVPK--WASRIDK 254
H Q+ + +++E +I H +K+ ++++FELIT+ +SV W I K
Sbjct: 606 DHVWQSGVQKDVSESHLDITHYKRIDEDTIKKIEHRIFELITEGRPVSVKNLDWYMAIGK 665
Query: 255 KGYTLL 260
G+ L
Sbjct: 666 YGFRLF 671
>sp|Q9NZM3|ITSN2_HUMAN Intersectin-2 OS=Homo sapiens GN=ITSN2 PE=1 SV=3
Length = 1697
Score = 31.6 bits (70), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 53 ISLLSPESSSTSLPNPEISSS-NPESSTSSLPNPEIF----SPDPESSTTSP--ANISTI 105
I+ LS +S T+LP + + P STSSLPN P P SS+T P ++ S +
Sbjct: 137 ITSLSSATSGTNLPPLMMPTPLVPSVSTSSLPNGTASLIQPLPIPYSSSTLPHGSSYSLM 196
Query: 106 SLGLGKGNMLKAKKLVD 122
G G ++ KA+ L+D
Sbjct: 197 MGGFGGASIQKAQSLID 213
>sp|Q5R629|ARMC9_PONAB LisH domain-containing protein ARMC9 OS=Pongo abelii GN=ARMC9 PE=2
SV=1
Length = 665
Score = 31.6 bits (70), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 68/154 (44%), Gaps = 13/154 (8%)
Query: 146 AKKFVDFSAAELVELFVKKDCTIKGVP-------NHKKDKNWAIRLTLLFAASNGITEIL 198
K+++DF+ E K+C IKG P + + K+ I+ L+ A NG ++
Sbjct: 15 VKEYLDFAEFEDTLKTFSKECKIKGKPLCKTVGGSFRDSKSLTIQKDLVTAFDNGDQKVF 74
Query: 199 KEIIHQH-PQAIL-LDNLNEKEQNILHV--AVKRRQYKVFELITKEMQLSVPKWASRIDK 254
+ +H P ++ D+ ++ + LH+ A+ +Y V +E+ + + + ++
Sbjct: 75 FNLWEEHIPSSVRDGDSFAQRLEFYLHIHFAIYLLKYSVGRPDKEELDEKISYFKTYLET 134
Query: 255 KGYTLLHHVADMKHYKEGTRPGPVLQ--FQEELQ 286
KG L + Y P P++ F+E Q
Sbjct: 135 KGAALSQTTEFLPFYALPFVPNPMVHPSFKELFQ 168
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.131 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 133,115,719
Number of Sequences: 539616
Number of extensions: 5594076
Number of successful extensions: 27694
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 119
Number of HSP's that attempted gapping in prelim test: 27002
Number of HSP's gapped (non-prelim): 683
length of query: 357
length of database: 191,569,459
effective HSP length: 119
effective length of query: 238
effective length of database: 127,355,155
effective search space: 30310526890
effective search space used: 30310526890
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)