BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>039987
MSFSTSDNRTQLKACEKCFNSSKVLRTSHTRENPNRKFWKCKGCGAFKWDDDRKSSECND
FRGMVDRNMSENKIDILLGEVCKLGHQMECYSLKFQLFEKELQQR

High Scoring Gene Products

Symbol, full name Information P value
AT1G54930 protein from Arabidopsis thaliana 9.8e-06

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  039987
        (105 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2010985 - symbol:AT1G54930 species:3702 "Arabi...    97  9.8e-06   2


>TAIR|locus:2010985 [details] [associations]
            symbol:AT1G54930 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
            InterPro:IPR001878 InterPro:IPR010666 Pfam:PF00098 Pfam:PF06839
            PROSITE:PS50158 SMART:SM00343 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
            Gene3D:4.10.60.10 SUPFAM:SSF57756 EMBL:AC064840 EMBL:AC069144
            HOGENOM:HOG000152446 ProtClustDB:CLSN2682434 IPI:IPI00547444
            PIR:G96590 RefSeq:NP_175890.1 UniGene:At.52206
            EnsemblPlants:AT1G54930.1 GeneID:841933 KEGG:ath:AT1G54930
            TAIR:At1g54930 eggNOG:NOG259613 InParanoid:Q9FZ38 OMA:LHETELD
            PhylomeDB:Q9FZ38 Genevestigator:Q9FZ38 Uniprot:Q9FZ38
        Length = 353

 Score = 97 (39.2 bits), Expect = 9.8e-06, Sum P(2) = 9.8e-06
 Identities = 17/36 (47%), Positives = 23/36 (63%)

Query:    27 TSHTRENPNRKFWKCKGCGAFKWDDDRKSSECNDFR 62
             TS T +NPNR+F+ C  CG FKW D +   +C  F+
Sbjct:    51 TSKTEKNPNRRFYTCPSCGYFKWCD-QGLGDCGFFK 85

 Score = 32 (16.3 bits), Expect = 9.8e-06, Sum P(2) = 9.8e-06
 Identities = 8/13 (61%), Positives = 9/13 (69%)

Query:    91 YSLKFQLFEKELQ 103
             +SLK QL E E Q
Sbjct:   294 HSLKKQLLEVEKQ 306


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.132   0.419    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      105       105   0.00091  102 3  11 22  0.40    30
                                                     29  0.39    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  576 (61 KB)
  Total size of DFA:  141 KB (2087 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.00u 0.13s 12.13t   Elapsed:  00:00:01
  Total cpu time:  12.00u 0.13s 12.13t   Elapsed:  00:00:01
  Start:  Thu May  9 21:28:47 2013   End:  Thu May  9 21:28:48 2013

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