Query 039987
Match_columns 105
No_of_seqs 98 out of 109
Neff 2.5
Searched_HMMs 29240
Date Mon Mar 25 05:49:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039987.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039987hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qyp_A RNA polymerase II; tran 97.1 0.00069 2.4E-08 41.2 4.4 39 12-51 15-55 (57)
2 3h0g_I DNA-directed RNA polyme 96.3 0.0049 1.7E-07 42.1 4.4 39 12-51 72-112 (113)
3 1tfi_A Transcriptional elongat 96.0 0.0079 2.7E-07 36.7 4.0 39 10-49 7-47 (50)
4 1twf_I B12.6, DNA-directed RNA 95.8 0.014 4.7E-07 40.4 4.8 42 12-54 72-115 (122)
5 3po3_S Transcription elongatio 93.8 0.043 1.5E-06 40.3 3.2 38 11-49 136-175 (178)
6 3qt1_I DNA-directed RNA polyme 93.7 0.012 4.1E-07 41.9 0.0 39 12-51 92-132 (133)
7 1pqv_S STP-alpha, transcriptio 92.7 0.1 3.5E-06 40.8 4.0 37 12-49 268-306 (309)
8 2gai_A DNA topoisomerase I; zi 89.7 0.079 2.7E-06 45.1 0.6 37 12-52 572-611 (633)
9 2fiy_A Protein FDHE homolog; F 86.3 0.47 1.6E-05 37.5 3.0 53 2-54 212-270 (309)
10 3j20_Y 30S ribosomal protein S 86.2 0.75 2.6E-05 27.8 3.3 31 12-50 19-49 (50)
11 1dl6_A Transcription factor II 85.4 1.9 6.6E-05 26.4 4.9 46 4-56 2-48 (58)
12 2fiy_A Protein FDHE homolog; F 84.3 0.7 2.4E-05 36.5 3.2 36 10-45 180-215 (309)
13 1pft_A TFIIB, PFTFIIBN; N-term 76.1 3.1 0.00011 23.9 3.4 36 12-54 5-40 (50)
14 2k4x_A 30S ribosomal protein S 71.5 4.2 0.00014 24.9 3.3 34 12-53 18-51 (55)
15 3cng_A Nudix hydrolase; struct 70.5 4.4 0.00015 27.6 3.5 36 12-51 3-38 (189)
16 3h0g_I DNA-directed RNA polyme 69.7 5 0.00017 27.0 3.7 36 12-51 4-39 (113)
17 2zkr_2 60S ribosomal protein L 64.5 3.7 0.00013 28.6 2.2 37 2-50 7-43 (97)
18 1k81_A EIF-2-beta, probable tr 63.5 6.5 0.00022 22.2 2.8 31 13-48 1-31 (36)
19 1dxg_A Desulforedoxin; non-hem 62.7 4 0.00014 22.8 1.7 14 36-49 4-17 (36)
20 1d0q_A DNA primase; zinc-bindi 59.7 5.7 0.00019 25.9 2.3 29 12-45 37-65 (103)
21 3qt1_I DNA-directed RNA polyme 59.3 4.1 0.00014 28.7 1.7 33 12-48 24-56 (133)
22 3j21_e 50S ribosomal protein L 54.7 3.7 0.00013 26.6 0.8 34 2-46 7-40 (62)
23 1vq8_1 50S ribosomal protein L 54.1 3 0.0001 26.7 0.2 19 2-21 8-26 (57)
24 1vq8_Z 50S ribosomal protein L 53.5 11 0.00038 24.8 3.0 36 12-56 27-63 (83)
25 1twf_I B12.6, DNA-directed RNA 52.6 5.4 0.00019 27.2 1.4 37 11-51 3-39 (122)
26 2ct7_A Ring finger protein 31; 52.0 20 0.00067 22.6 3.9 51 13-71 26-83 (86)
27 1vd4_A Transcription initiatio 51.8 1.9 6.4E-05 24.4 -0.9 41 12-53 14-55 (62)
28 1k3x_A Endonuclease VIII; hydr 51.4 8.8 0.0003 29.0 2.5 27 13-45 235-261 (262)
29 2xzf_A Formamidopyrimidine-DNA 51.2 8.8 0.0003 29.1 2.5 27 13-45 243-269 (271)
30 1k82_A Formamidopyrimidine-DNA 49.9 9.5 0.00033 28.9 2.5 27 13-45 241-267 (268)
31 1ee8_A MUTM (FPG) protein; bet 49.8 10 0.00035 28.8 2.6 27 13-45 236-262 (266)
32 3u6p_A Formamidopyrimidine-DNA 47.4 11 0.00037 28.7 2.5 27 13-45 246-272 (273)
33 1nui_A DNA primase/helicase; z 45.9 13 0.00044 26.9 2.6 29 12-47 14-42 (255)
34 1lv3_A Hypothetical protein YA 45.8 11 0.00037 24.5 1.9 38 10-54 7-48 (68)
35 3cc2_Z 50S ribosomal protein L 45.4 16 0.00055 25.9 2.9 37 12-56 60-96 (116)
36 2con_A RUH-035 protein, NIN on 45.3 12 0.0004 24.8 2.1 25 11-36 29-53 (79)
37 4efa_E V-type proton ATPase su 45.3 5.4 0.00018 29.0 0.5 9 31-39 224-232 (233)
38 1ffk_W Ribosomal protein L37AE 44.5 12 0.00043 24.3 2.1 28 12-47 27-54 (73)
39 2elm_A Zinc finger protein 406 44.3 11 0.00038 18.5 1.5 13 34-46 5-17 (37)
40 4a18_A RPL37, ribosomal protei 42.2 6 0.00021 27.5 0.3 33 2-46 7-39 (94)
41 3iz5_l 60S ribosomal protein L 41.3 6 0.00021 27.5 0.2 33 2-46 7-39 (94)
42 2elv_A Zinc finger protein 406 39.7 18 0.00063 17.2 1.8 13 34-46 5-17 (36)
43 2elq_A Zinc finger protein 406 39.6 17 0.00057 17.4 1.7 13 34-46 5-17 (36)
44 1p7a_A BF3, BKLF, kruppel-like 39.5 16 0.00055 17.5 1.6 13 34-46 7-19 (37)
45 2els_A Zinc finger protein 406 39.4 19 0.00063 17.2 1.8 13 34-46 5-17 (36)
46 2elx_A Zinc finger protein 406 37.6 14 0.00049 17.2 1.2 12 35-46 4-15 (35)
47 2elt_A Zinc finger protein 406 37.3 16 0.00053 17.3 1.3 13 34-46 5-17 (36)
48 1srk_A Zinc finger protein ZFP 36.2 16 0.00056 17.2 1.3 12 35-46 4-15 (35)
49 4esj_A Type-2 restriction enzy 35.6 15 0.0005 29.4 1.6 62 12-78 34-101 (257)
50 2elr_A Zinc finger protein 406 34.0 20 0.00069 16.9 1.4 13 33-45 4-16 (36)
51 2pk7_A Uncharacterized protein 33.4 36 0.0012 21.5 2.9 31 10-48 6-36 (69)
52 1isu_A High potential iron sul 33.3 11 0.00038 23.9 0.4 28 40-67 21-51 (62)
53 2au3_A DNA primase; zinc ribbo 32.3 30 0.001 27.2 2.8 29 12-45 34-62 (407)
54 2elp_A Zinc finger protein 406 31.8 20 0.0007 17.1 1.2 12 35-46 6-17 (37)
55 3mly_P HIV-1 GP120 third varia 30.5 17 0.00057 18.0 0.8 9 32-40 9-17 (23)
56 2eps_A POZ-, at HOOK-, and zin 30.5 34 0.0011 18.2 2.1 17 30-46 4-20 (54)
57 1vzi_A Desulfoferrodoxin; ferr 30.3 19 0.00066 24.8 1.3 14 36-49 5-18 (126)
58 3v2d_5 50S ribosomal protein L 30.2 14 0.00048 23.1 0.5 24 12-48 30-53 (60)
59 2m0e_A Zinc finger and BTB dom 29.9 15 0.0005 16.1 0.4 8 38-45 2-9 (29)
60 2en2_A B-cell lymphoma 6 prote 29.8 37 0.0013 16.6 2.1 14 33-46 6-19 (42)
61 2js4_A UPF0434 protein BB2007; 29.8 33 0.0011 21.8 2.2 30 10-47 6-35 (70)
62 3uji_P Envelope glycoprotein G 29.5 18 0.0006 17.9 0.8 9 32-40 9-17 (23)
63 1rik_A E6APC1 peptide; E6-bind 28.7 22 0.00075 15.7 1.0 9 38-46 2-10 (29)
64 2elo_A Zinc finger protein 406 28.3 18 0.00062 17.2 0.7 13 34-46 5-17 (37)
65 2hf1_A Tetraacyldisaccharide-1 28.3 31 0.001 21.8 1.9 31 10-48 6-36 (68)
66 2epr_A POZ-, at HOOK-, and zin 28.3 32 0.0011 17.7 1.7 17 30-46 4-20 (48)
67 1p91_A Ribosomal RNA large sub 28.2 39 0.0013 23.3 2.6 27 14-50 4-30 (269)
68 2jr6_A UPF0434 protein NMA0874 28.0 42 0.0014 21.1 2.5 30 10-47 6-35 (68)
69 2dmi_A Teashirt homolog 3; zin 27.9 34 0.0011 20.5 2.0 9 36-44 78-86 (115)
70 2emb_A Zinc finger protein 473 27.8 26 0.00088 17.5 1.3 13 34-46 8-20 (44)
71 1fv5_A First zinc finger of U- 27.5 18 0.00062 19.5 0.6 11 35-45 5-15 (36)
72 2kvh_A Zinc finger and BTB dom 27.5 24 0.00081 15.6 1.0 9 37-45 2-10 (27)
73 2m0f_A Zinc finger and BTB dom 27.3 25 0.00084 15.4 1.0 8 38-45 2-9 (29)
74 2epc_A Zinc finger protein 32; 27.2 27 0.00094 17.0 1.3 13 34-46 7-19 (42)
75 2epu_A Zinc finger protein 32; 27.2 35 0.0012 17.1 1.7 14 33-46 7-20 (45)
76 2ctt_A DNAJ homolog subfamily 26.7 44 0.0015 21.3 2.5 7 13-19 29-35 (104)
77 4ayb_P DNA-directed RNA polyme 26.4 30 0.001 21.4 1.5 12 8-19 19-30 (48)
78 2em4_A Zinc finger protein 28 26.2 28 0.00097 17.6 1.2 14 33-46 7-20 (46)
79 2el5_A Zinc finger protein 268 26.2 28 0.00095 17.1 1.2 13 34-46 6-18 (42)
80 2m0d_A Zinc finger and BTB dom 26.0 28 0.00095 15.2 1.1 10 37-46 2-11 (30)
81 2eof_A Zinc finger protein 268 26.0 29 0.001 17.1 1.3 13 34-46 8-20 (44)
82 3mlz_P HIV-1 GP120 third varia 25.5 17 0.00058 18.2 0.2 8 33-40 11-18 (25)
83 2ept_A Zinc finger protein 32; 25.2 32 0.0011 16.8 1.3 13 34-46 6-18 (41)
84 2epv_A Zinc finger protein 268 25.1 30 0.001 17.4 1.2 13 34-46 8-20 (44)
85 2ytb_A Zinc finger protein 32; 24.5 24 0.00083 17.2 0.7 13 34-46 7-19 (42)
86 2ytf_A Zinc finger protein 268 24.4 32 0.0011 17.2 1.2 13 34-46 8-20 (46)
87 1njq_A Superman protein; zinc- 24.3 34 0.0012 16.6 1.3 12 35-46 3-14 (39)
88 2eow_A Zinc finger protein 347 24.2 35 0.0012 17.1 1.3 13 34-46 8-20 (46)
89 2emi_A Zinc finger protein 484 23.7 34 0.0012 17.2 1.2 13 34-46 8-20 (46)
90 2ytp_A Zinc finger protein 484 23.6 35 0.0012 17.2 1.3 13 34-46 8-20 (46)
91 2yu5_A Zinc finger protein 473 23.5 33 0.0011 17.1 1.2 13 34-46 8-20 (44)
92 2lvu_A Zinc finger and BTB dom 29.2 17 0.00058 16.0 0.0 8 38-45 2-9 (26)
93 2yte_A Zinc finger protein 473 23.5 27 0.00091 17.1 0.8 13 34-46 6-18 (42)
94 2lce_A B-cell lymphoma 6 prote 23.4 33 0.0011 19.1 1.2 18 29-46 8-25 (74)
95 3bqp_A Proactivator polypeptid 23.4 37 0.0013 19.9 1.5 37 60-96 14-53 (80)
96 3k7a_M Transcription initiatio 23.3 46 0.0016 25.6 2.4 33 12-49 21-53 (345)
97 1vk6_A NADH pyrophosphatase; 1 23.3 52 0.0018 24.6 2.7 31 12-50 107-137 (269)
98 2yrj_A Zinc finger protein 473 22.9 37 0.0013 16.9 1.3 13 34-46 8-20 (46)
99 2eq0_A Zinc finger protein 347 22.9 38 0.0013 17.0 1.3 13 34-46 8-20 (46)
100 2eor_A Zinc finger protein 224 22.8 37 0.0012 17.0 1.3 13 34-46 8-20 (46)
101 2kvg_A Zinc finger and BTB dom 22.7 25 0.00085 15.8 0.5 9 38-46 3-11 (27)
102 2ep0_A Zinc finger protein 28 22.7 53 0.0018 16.4 1.9 13 33-45 7-19 (46)
103 1ard_A Yeast transcription fac 22.7 27 0.00092 15.3 0.6 8 38-45 2-9 (29)
104 2eoy_A Zinc finger protein 473 22.6 38 0.0013 17.1 1.3 13 34-46 8-20 (46)
105 1paa_A Yeast transcription fac 22.6 25 0.00085 15.6 0.5 8 38-45 2-9 (30)
106 3iuf_A Zinc finger protein UBI 22.5 37 0.0013 17.8 1.3 12 35-46 4-15 (48)
107 1yui_A GAGA-factor; complex (D 22.4 37 0.0013 17.9 1.3 13 34-46 20-32 (54)
108 2kvf_A Zinc finger and BTB dom 22.4 33 0.0011 15.1 1.0 8 38-45 3-10 (28)
109 2emy_A Zinc finger protein 268 22.1 38 0.0013 17.0 1.3 13 34-46 8-20 (46)
110 3pwf_A Rubrerythrin; non heme 22.1 78 0.0027 22.5 3.3 13 37-49 137-149 (170)
111 2yts_A Zinc finger protein 484 22.1 37 0.0013 17.0 1.2 13 34-46 8-20 (46)
112 1nee_A EIF-2-beta, probable tr 22.1 43 0.0015 23.8 1.9 30 13-47 103-132 (138)
113 2zjr_Z 50S ribosomal protein L 22.1 20 0.00069 22.2 0.1 24 12-48 30-53 (60)
114 2eoj_A Zinc finger protein 268 21.9 26 0.00089 17.4 0.5 13 34-46 8-20 (44)
115 2d74_B Translation initiation 21.9 32 0.0011 24.8 1.2 31 13-48 105-135 (148)
116 2ysp_A Zinc finger protein 224 21.7 50 0.0017 16.5 1.7 14 33-46 7-20 (46)
117 2yso_A ZFP-95, zinc finger pro 21.7 41 0.0014 16.8 1.3 13 34-46 8-20 (46)
118 2ene_A Zinc finger protein 347 21.5 40 0.0014 16.9 1.2 13 34-46 8-20 (46)
119 2ep3_A Zinc finger protein 484 21.5 39 0.0013 16.9 1.2 13 34-46 8-20 (46)
120 2gtg_A Proactivator polypeptid 21.4 43 0.0015 20.1 1.5 35 60-94 16-53 (83)
121 2yto_A Zinc finger protein 484 21.3 40 0.0014 17.0 1.2 13 34-46 8-20 (46)
122 2em8_A Zinc finger protein 224 21.3 62 0.0021 16.2 2.0 14 33-46 7-20 (46)
123 2emx_A Zinc finger protein 268 21.2 40 0.0014 16.7 1.2 13 34-46 6-18 (44)
124 2emh_A Zinc finger protein 484 21.2 41 0.0014 16.8 1.3 13 34-46 8-20 (46)
125 4e2x_A TCAB9; kijanose, tetron 21.2 50 0.0017 24.7 2.2 17 37-53 52-68 (416)
126 2emj_A Zinc finger protein 28 21.1 39 0.0013 17.0 1.2 13 34-46 8-20 (46)
127 2ytj_A Zinc finger protein 484 21.1 39 0.0013 16.9 1.2 13 34-46 8-20 (46)
128 2epq_A POZ-, at HOOK-, and zin 21.1 32 0.0011 17.3 0.8 33 12-45 10-45 (45)
129 4a17_Y RPL37A, 60S ribosomal p 21.0 79 0.0027 22.0 3.0 37 12-56 36-72 (103)
130 2em7_A Zinc finger protein 224 21.0 41 0.0014 16.9 1.2 13 34-46 8-20 (46)
131 2eoo_A ZFP-95, zinc finger pro 21.0 43 0.0015 16.9 1.3 12 34-45 8-19 (46)
132 2yu8_A Zinc finger protein 347 20.9 41 0.0014 16.8 1.2 13 34-46 8-20 (46)
133 2ep2_A Zinc finger protein 484 20.9 41 0.0014 16.8 1.2 13 34-46 8-20 (46)
134 2el4_A Zinc finger protein 268 20.8 40 0.0014 16.8 1.2 13 34-46 8-20 (46)
135 2eom_A ZFP-95, zinc finger pro 20.8 48 0.0017 16.7 1.5 13 33-45 7-19 (46)
136 2en8_A Zinc finger protein 224 20.7 43 0.0015 16.7 1.3 13 34-46 8-20 (46)
137 2eme_A Zinc finger protein 473 20.7 42 0.0014 16.7 1.2 13 34-46 8-20 (46)
138 2epw_A Zinc finger protein 268 20.6 42 0.0014 16.7 1.2 12 34-45 8-19 (46)
139 2ytk_A Zinc finger protein 347 20.5 42 0.0014 16.8 1.2 13 34-46 8-20 (46)
140 2eoh_A Zinc finger protein 28 20.5 49 0.0017 16.6 1.5 13 34-46 8-20 (46)
141 2eml_A Zinc finger protein 28 20.5 41 0.0014 16.8 1.2 13 34-46 8-20 (46)
142 2kwq_A Protein MCM10 homolog; 20.5 34 0.0011 23.2 1.0 16 41-56 68-83 (92)
143 2em2_A Zinc finger protein 28 20.4 46 0.0016 16.7 1.4 13 34-46 8-20 (46)
144 2em9_A Zinc finger protein 224 20.4 43 0.0015 16.7 1.2 13 34-46 8-20 (46)
145 2drp_A Protein (tramtrack DNA- 20.3 38 0.0013 18.2 1.1 12 35-46 7-18 (66)
146 3j21_i 50S ribosomal protein L 20.3 80 0.0027 21.0 2.8 28 12-47 35-62 (83)
147 2ema_A Zinc finger protein 347 20.2 45 0.0015 16.7 1.3 13 34-46 8-20 (46)
148 2yth_A Zinc finger protein 224 20.2 34 0.0012 17.2 0.8 13 34-46 8-20 (46)
149 2elz_A Zinc finger protein 224 20.0 54 0.0018 16.4 1.6 14 33-46 7-20 (46)
No 1
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=97.11 E-value=0.00069 Score=41.18 Aligned_cols=39 Identities=31% Similarity=0.739 Sum_probs=32.3
Q ss_pred cccccccCCceeEEEeecC--CCCCCCceEeCCCCCeeEecC
Q 039987 12 LKACEKCFNSSKVLRTSHT--RENPNRKFWKCKGCGAFKWDD 51 (105)
Q Consensus 12 l~~Cp~Cg~~~avlrTSkT--~~NPGRkFY~CpsC~FFqW~D 51 (105)
.+.||.||...++-.+..+ ...|--.||.|..|+. .|.+
T Consensus 15 ~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~-~w~~ 55 (57)
T 1qyp_A 15 KITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGH-TWRS 55 (57)
T ss_dssp ECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCC-EEEC
T ss_pred EeECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCC-Eecc
Confidence 5789999998888888555 5578899999999986 6766
No 2
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=96.30 E-value=0.0049 Score=42.13 Aligned_cols=39 Identities=18% Similarity=0.527 Sum_probs=32.5
Q ss_pred cccccccCCceeEEEee--cCCCCCCCceEeCCCCCeeEecC
Q 039987 12 LKACEKCFNSSKVLRTS--HTRENPNRKFWKCKGCGAFKWDD 51 (105)
Q Consensus 12 l~~Cp~Cg~~~avlrTS--kT~~NPGRkFY~CpsC~FFqW~D 51 (105)
...||+|+...|+..++ +....|--.||+|..|+. +|.+
T Consensus 72 ~~~Cp~C~~~~a~~~q~q~rsade~mt~fy~C~~C~~-~w~~ 112 (113)
T 3h0g_I 72 DKECPRCHQHEAVFYQTHSRRGDTMMTLIYVCVHCGF-AFEE 112 (113)
T ss_dssp CSCCSSSCCSCEEEECCCCSSCCCCCCCEEEESSSCC-CCCC
T ss_pred ccCCCCCCCceEEEEEEecccCCCCCeeEEEcCCCCC-EEec
Confidence 37899999999999884 457889999999999984 5764
No 3
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=96.05 E-value=0.0079 Score=36.67 Aligned_cols=39 Identities=28% Similarity=0.722 Sum_probs=31.9
Q ss_pred cccccccccCCceeEEEeec--CCCCCCCceEeCCCCCeeEe
Q 039987 10 TQLKACEKCFNSSKVLRTSH--TRENPNRKFWKCKGCGAFKW 49 (105)
Q Consensus 10 ~~l~~Cp~Cg~~~avlrTSk--T~~NPGRkFY~CpsC~FFqW 49 (105)
...+.||+|+...++..++- ....|=-.||.|..|+. +|
T Consensus 7 t~~~~Cp~Cg~~~a~f~q~Q~RsaDE~mT~Fy~C~~Cg~-~w 47 (50)
T 1tfi_A 7 TDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGN-RW 47 (50)
T ss_dssp CCCSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCC-EE
T ss_pred eCccCCCCCCCCEEEEEEecCcCCCCCceEEEEcCCCCC-eE
Confidence 44678999999999988854 46678899999999985 45
No 4
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=95.80 E-value=0.014 Score=40.35 Aligned_cols=42 Identities=24% Similarity=0.572 Sum_probs=35.2
Q ss_pred cccccccCCceeEEEee--cCCCCCCCceEeCCCCCeeEecCCCC
Q 039987 12 LKACEKCFNSSKVLRTS--HTRENPNRKFWKCKGCGAFKWDDDRK 54 (105)
Q Consensus 12 l~~Cp~Cg~~~avlrTS--kT~~NPGRkFY~CpsC~FFqW~De~~ 54 (105)
...||.|+...|+..++ +....|--.||.|..|+. +|.+...
T Consensus 72 ~~~Cp~C~~~~a~~~q~q~rsade~~t~fy~C~~C~~-~w~~nn~ 115 (122)
T 1twf_I 72 DRECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSH-IFTSDQK 115 (122)
T ss_dssp CCCCTTTCCCCEEEEECSSCCTTCCCCEEEEETTTCC-EEECCTT
T ss_pred CCCCCCCCCCEEEEEEecCccCCCCceEEEEeCCCCC-EeccCCh
Confidence 57899999999999885 446778999999999996 7988653
No 5
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=93.84 E-value=0.043 Score=40.31 Aligned_cols=38 Identities=26% Similarity=0.649 Sum_probs=31.1
Q ss_pred ccccccccCCceeEEEeecC--CCCCCCceEeCCCCCeeEe
Q 039987 11 QLKACEKCFNSSKVLRTSHT--RENPNRKFWKCKGCGAFKW 49 (105)
Q Consensus 11 ~l~~Cp~Cg~~~avlrTSkT--~~NPGRkFY~CpsC~FFqW 49 (105)
....||.|+...|+..++.| ...|-..||.|..|+. +|
T Consensus 136 ~~~~Cp~C~~~~a~~~q~Q~rsaDE~mt~f~~C~~C~~-~w 175 (178)
T 3po3_S 136 DRFTCGKCKEKKVSYYQLQTRSAAAPLTTFCTCEACGN-RW 175 (178)
T ss_dssp SSSCCSSSCCSCEECCCCCCSCTTSCCCCCEEETTTCC-EE
T ss_pred CCcCCCCCCCCceEEEEeecccCCCCCcEEEEcCCCCC-ee
Confidence 36789999999998888555 5678899999999985 45
No 6
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=93.69 E-value=0.012 Score=41.92 Aligned_cols=39 Identities=28% Similarity=0.846 Sum_probs=0.0
Q ss_pred cccccccCCceeEEEeec--CCCCCCCceEeCCCCCeeEecC
Q 039987 12 LKACEKCFNSSKVLRTSH--TRENPNRKFWKCKGCGAFKWDD 51 (105)
Q Consensus 12 l~~Cp~Cg~~~avlrTSk--T~~NPGRkFY~CpsC~FFqW~D 51 (105)
...||.|+...|+..++. ....|--.||.|..|++ +|.+
T Consensus 92 ~~~CpkCg~~~a~f~q~Q~RsaDE~mT~fy~C~~C~~-~w~e 132 (133)
T 3qt1_I 92 DRECPKCHSRENVFFQLQIRSADEPMTTFYKCVNCGH-RWKE 132 (133)
T ss_dssp ------------------------------------------
T ss_pred cCCCCCCCCceEEEEEEeeecCCCCCcEEEEcCCCCC-EeCc
Confidence 578999999999888744 47788999999999984 5764
No 7
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=92.73 E-value=0.1 Score=40.82 Aligned_cols=37 Identities=24% Similarity=0.679 Sum_probs=31.0
Q ss_pred cccccccCCceeEEEee--cCCCCCCCceEeCCCCCeeEe
Q 039987 12 LKACEKCFNSSKVLRTS--HTRENPNRKFWKCKGCGAFKW 49 (105)
Q Consensus 12 l~~Cp~Cg~~~avlrTS--kT~~NPGRkFY~CpsC~FFqW 49 (105)
...||.|+...+...+. +....|-..||.|-.|+. .|
T Consensus 268 ~~~C~~C~~~~~~~~q~Q~rsaDe~~t~f~~C~~Cg~-~w 306 (309)
T 1pqv_S 268 RFTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEACGN-RW 306 (309)
T ss_pred cccCCCCCCCeeEEEEeecccCCCCCcEEEEeCCCCC-ce
Confidence 67899999999988874 446779999999999986 45
No 8
>2gai_A DNA topoisomerase I; zinc ribbon; HET: DNA; 1.70A {Thermotoga maritima} PDB: 2gaj_A*
Probab=89.68 E-value=0.079 Score=45.10 Aligned_cols=37 Identities=11% Similarity=-0.104 Sum_probs=19.4
Q ss_pred cccccccCCceeEEEeecCCCCCCCceEeCC---CCCeeEecCC
Q 039987 12 LKACEKCFNSSKVLRTSHTRENPNRKFWKCK---GCGAFKWDDD 52 (105)
Q Consensus 12 l~~Cp~Cg~~~avlrTSkT~~NPGRkFY~Cp---sC~FFqW~De 52 (105)
.+.||.|+.++.+++.++ .|+.||.|. .|.|-.|..+
T Consensus 572 ~G~CP~Cg~g~l~~r~~k----~G~~f~gCs~yp~C~f~~~~~p 611 (633)
T 2gai_A 572 YGFYLKCECGKTRSVKND----EIAVIDDGKIFLGRKDSESGSP 611 (633)
T ss_dssp TEEEEECSSSCCEECCTT----SBCEEETTEEEC----------
T ss_pred cccCcccCCCcceeeccc----CCCeEEeCCCCcCCCCeecCCc
Confidence 346999974566666553 477899996 7999999764
No 9
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=86.25 E-value=0.47 Score=37.49 Aligned_cols=53 Identities=17% Similarity=0.147 Sum_probs=36.4
Q ss_pred ccccccCccccccccccCCceeEEEeecCC-----CCCCCceEeCCCCC-eeEecCCCC
Q 039987 2 SFSTSDNRTQLKACEKCFNSSKVLRTSHTR-----ENPNRKFWKCKGCG-AFKWDDDRK 54 (105)
Q Consensus 2 ~~~~~~n~~~l~~Cp~Cg~~~avlrTSkT~-----~NPGRkFY~CpsC~-FFqW~De~~ 54 (105)
|++.+.=+.+...||.||+..-+..-+-.+ ..++-+.+.|..|+ +++=-|...
T Consensus 212 s~C~t~W~~~R~~C~~Cg~~~~l~y~~~e~~~~~~~~~~~r~e~C~~C~~YlK~~~~~~ 270 (309)
T 2fiy_A 212 SLCACEWHYVRIKCSHCEESKHLAYLSLEHDGQPAEKAVLRAETCPSCQGYLKQFYLEF 270 (309)
T ss_dssp TTTCCEEECCTTSCSSSCCCSCCEEECCCC-CCCSTTCSEEEEEETTTTEEEEEEETTT
T ss_pred CCCCCEEeecCcCCcCCCCCCCeeEEEecCccccCCCcceEEEEcccccchHhhhhhcc
Confidence 345555566789999998864433333344 45899999999998 666655543
No 10
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=86.24 E-value=0.75 Score=27.81 Aligned_cols=31 Identities=26% Similarity=0.718 Sum_probs=21.6
Q ss_pred cccccccCCceeEEEeecCCCCCCCceEeCCCCCeeEec
Q 039987 12 LKACEKCFNSSKVLRTSHTRENPNRKFWKCKGCGAFKWD 50 (105)
Q Consensus 12 l~~Cp~Cg~~~avlrTSkT~~NPGRkFY~CpsC~FFqW~ 50 (105)
..-||.||.. ...... ..-+.|+.|+|-.|.
T Consensus 19 ~k~CP~CG~~-~fm~~~-------~~R~~C~kCG~t~~~ 49 (50)
T 3j20_Y 19 NKFCPRCGPG-VFMADH-------GDRWACGKCGYTEWK 49 (50)
T ss_dssp SEECSSSCSS-CEEEEC-------SSEEECSSSCCEEEC
T ss_pred cccCCCCCCc-eEEecC-------CCeEECCCCCCEEEC
Confidence 6789999743 333221 245899999999985
No 11
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=85.45 E-value=1.9 Score=26.37 Aligned_cols=46 Identities=17% Similarity=0.159 Sum_probs=29.0
Q ss_pred ccccCccc-cccccccCCceeEEEeecCCCCCCCceEeCCCCCeeEecCCCCCC
Q 039987 4 STSDNRTQ-LKACEKCFNSSKVLRTSHTRENPNRKFWKCKGCGAFKWDDDRKSS 56 (105)
Q Consensus 4 ~~~~n~~~-l~~Cp~Cg~~~avlrTSkT~~NPGRkFY~CpsC~FFqW~De~~~~ 56 (105)
|+|+-+.- ..+||.|++.+ ++. +..+--+.|..||+-.=+.....+
T Consensus 2 ~~~~~~ll~~~~Cp~C~~~~-lv~------D~~~ge~vC~~CGlVl~e~~iD~g 48 (58)
T 1dl6_A 2 STSRLDALPRVTCPNHPDAI-LVE------DYRAGDMICPECGLVVGDRVIDVG 48 (58)
T ss_dssp TTCSCCCCSCCSBTTBSSSC-CEE------CSSSCCEECTTTCCEECCSCCCCC
T ss_pred ccchhhccccccCcCCCCCc-eeE------eCCCCeEEeCCCCCEEeccccccC
Confidence 45555554 44899998755 332 234455999999987755554444
No 12
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=84.33 E-value=0.7 Score=36.52 Aligned_cols=36 Identities=11% Similarity=0.308 Sum_probs=24.8
Q ss_pred cccccccccCCceeEEEeecCCCCCCCceEeCCCCC
Q 039987 10 TQLKACEKCFNSSKVLRTSHTRENPNRKFWKCKGCG 45 (105)
Q Consensus 10 ~~l~~Cp~Cg~~~avlrTSkT~~NPGRkFY~CpsC~ 45 (105)
-+...||-||+.+..-....++.--|.|+..|.-|+
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~ 215 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCA 215 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCC
Confidence 347899999988876655555666798999998554
No 13
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=76.15 E-value=3.1 Score=23.94 Aligned_cols=36 Identities=22% Similarity=0.470 Sum_probs=23.5
Q ss_pred cccccccCCceeEEEeecCCCCCCCceEeCCCCCeeEecCCCC
Q 039987 12 LKACEKCFNSSKVLRTSHTRENPNRKFWKCKGCGAFKWDDDRK 54 (105)
Q Consensus 12 l~~Cp~Cg~~~avlrTSkT~~NPGRkFY~CpsC~FFqW~De~~ 54 (105)
..+||.|++.+ ++. ++.+.-+.|+.|++-.=.+...
T Consensus 5 ~~~CP~C~~~~-l~~------d~~~gelvC~~CG~v~~e~~id 40 (50)
T 1pft_A 5 QKVCPACESAE-LIY------DPERGEIVCAKCGYVIEENIID 40 (50)
T ss_dssp CCSCTTTSCCC-EEE------ETTTTEEEESSSCCBCCCCCCC
T ss_pred cEeCcCCCCcc-eEE------cCCCCeEECcccCCcccccccc
Confidence 45899997532 222 3456779999999865444443
No 14
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=71.47 E-value=4.2 Score=24.86 Aligned_cols=34 Identities=18% Similarity=0.517 Sum_probs=23.1
Q ss_pred cccccccCCceeEEEeecCCCCCCCceEeCCCCCeeEecCCC
Q 039987 12 LKACEKCFNSSKVLRTSHTRENPNRKFWKCKGCGAFKWDDDR 53 (105)
Q Consensus 12 l~~Cp~Cg~~~avlrTSkT~~NPGRkFY~CpsC~FFqW~De~ 53 (105)
...||.||+..-.. +. .-.|.|+.|++-.|....
T Consensus 18 ~~fCPkCG~~~~ma--~~------~dr~~C~kCgyt~~~~~~ 51 (55)
T 2k4x_A 18 HRFCPRCGPGVFLA--EH------ADRYSCGRCGYTEFKKAK 51 (55)
T ss_dssp SCCCTTTTTTCCCE--EC------SSEEECTTTCCCEECCCC
T ss_pred cccCcCCCCceeEe--cc------CCEEECCCCCCEEEeCcc
Confidence 57899998643211 21 237899999998886543
No 15
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=70.52 E-value=4.4 Score=27.58 Aligned_cols=36 Identities=22% Similarity=0.570 Sum_probs=23.2
Q ss_pred cccccccCCceeEEEeecCCCCCCCceEeCCCCCeeEecC
Q 039987 12 LKACEKCFNSSKVLRTSHTRENPNRKFWKCKGCGAFKWDD 51 (105)
Q Consensus 12 l~~Cp~Cg~~~avlrTSkT~~NPGRkFY~CpsC~FFqW~D 51 (105)
..-||.||.. ...+ .+....+..+.|++|++..|..
T Consensus 3 ~~~C~~CG~~-~~~~---~~~G~~~~~~~~~~~~~~~~~~ 38 (189)
T 3cng_A 3 MKFCSQCGGE-VILR---IPEGDTLPRYICPKCHTIHYQN 38 (189)
T ss_dssp CCBCTTTCCB-CEEE---CCTTCSSCEEEETTTTEEECCC
T ss_pred cccCchhCCc-cccc---cccCCCCcceECCCCCCccCCC
Confidence 3579999743 3222 2333556678899999877754
No 16
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=69.72 E-value=5 Score=27.01 Aligned_cols=36 Identities=14% Similarity=0.268 Sum_probs=24.1
Q ss_pred cccccccCCceeEEEeecCCCCCCCceEeCCCCCeeEecC
Q 039987 12 LKACEKCFNSSKVLRTSHTRENPNRKFWKCKGCGAFKWDD 51 (105)
Q Consensus 12 l~~Cp~Cg~~~avlrTSkT~~NPGRkFY~CpsC~FFqW~D 51 (105)
+.-||.|++. +.-+.+...++.-|.|+.|++-.-.|
T Consensus 4 m~FCp~Cgn~----L~~~~~~~~~~~~~~C~~C~y~~~~~ 39 (113)
T 3h0g_I 4 FQYCIECNNM----LYPREDKVDRVLRLACRNCDYSEIAA 39 (113)
T ss_dssp CCCCSSSCCC----CEECCCTTTCCCCEECSSSCCEECCS
T ss_pred ceeCcCCCCE----eeEcccCCCCeeEEECCCCCCeEEcC
Confidence 5679999754 22233433467789999999976443
No 17
>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1
Probab=64.45 E-value=3.7 Score=28.59 Aligned_cols=37 Identities=24% Similarity=0.422 Sum_probs=25.5
Q ss_pred ccccccCccccccccccCCceeEEEeecCCCCCCCceEeCCCCCeeEec
Q 039987 2 SFSTSDNRTQLKACEKCFNSSKVLRTSHTRENPNRKFWKCKGCGAFKWD 50 (105)
Q Consensus 2 ~~~~~~n~~~l~~Cp~Cg~~~avlrTSkT~~NPGRkFY~CpsC~FFqW~ 50 (105)
||+-++|+. -+.|++||.. +. +. +=+.|.+|+|=.|.
T Consensus 7 SfGkr~~Kt-H~lCrRCG~~-sf--------H~--qK~~CgkCGYpa~k 43 (97)
T 2zkr_2 7 SFGKRRNKT-HTLCRRCGSK-AY--------HL--QKSTCGKCGYPAKR 43 (97)
T ss_dssp SCSCSCCCC-EECCTTTCSS-CE--------ET--TSCCBTTTCTTTSS
T ss_pred CcccccCCC-CCcCCCCCCc-cC--------cC--ccccCcccCCchHh
Confidence 788888866 8999999755 33 11 22489999984443
No 18
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=63.49 E-value=6.5 Score=22.16 Aligned_cols=31 Identities=23% Similarity=0.587 Sum_probs=20.6
Q ss_pred ccccccCCceeEEEeecCCCCCCCceEeCCCCCeeE
Q 039987 13 KACEKCFNSSKVLRTSHTRENPNRKFWKCKGCGAFK 48 (105)
Q Consensus 13 ~~Cp~Cg~~~avlrTSkT~~NPGRkFY~CpsC~FFq 48 (105)
+.||.|++..-.+.. + .+--|.+|..||...
T Consensus 1 VlC~~C~~peT~l~~-~----~~~~~l~C~aCG~~~ 31 (36)
T 1k81_A 1 VICRECGKPDTKIIK-E----GRVHLLKCMACGAIR 31 (36)
T ss_dssp CCCSSSCSCEEEEEE-E----TTEEEEEEETTTEEE
T ss_pred CCCcCCCCCCcEEEE-e----CCcEEEEhhcCCCcc
Confidence 479999766544443 2 256677899998753
No 19
>1dxg_A Desulforedoxin; non-heme iron protein, rubredoxin type metal center, electron transport; 1.80A {Desulfovibrio gigas} SCOP: g.41.5.2 PDB: 1dcd_A 1dhg_A 1cfw_A 2lk5_A 2lk6_A
Probab=62.75 E-value=4 Score=22.79 Aligned_cols=14 Identities=29% Similarity=0.667 Sum_probs=11.1
Q ss_pred CceEeCCCCCeeEe
Q 039987 36 RKFWKCKGCGAFKW 49 (105)
Q Consensus 36 RkFY~CpsC~FFqW 49 (105)
-+||+|+.|+...=
T Consensus 4 ~~fY~C~~CGnive 17 (36)
T 1dxg_A 4 GDVYKCELCGQVVK 17 (36)
T ss_dssp TCEEECTTTCCEEE
T ss_pred ccEEEcCCCCcEEE
Confidence 47999999976654
No 20
>1d0q_A DNA primase; zinc-binding motif, protein, transferase; HET: DNA; 1.71A {Geobacillus stearothermophilus} SCOP: g.41.3.2
Probab=59.66 E-value=5.7 Score=25.91 Aligned_cols=29 Identities=21% Similarity=0.636 Sum_probs=21.0
Q ss_pred cccccccCCceeEEEeecCCCCCCCceEeCCCCC
Q 039987 12 LKACEKCFNSSKVLRTSHTRENPNRKFWKCKGCG 45 (105)
Q Consensus 12 l~~Cp~Cg~~~avlrTSkT~~NPGRkFY~CpsC~ 45 (105)
...||-|+........ ||++..|.|-+|+
T Consensus 37 ~~~CPfh~e~~pSf~V-----~~~k~~~~Cf~cg 65 (103)
T 1d0q_A 37 FGLCPFHGEKTPSFSV-----SPEKQIFHCFGCG 65 (103)
T ss_dssp EECCSSSCCSSCCEEE-----ETTTTEEEETTTC
T ss_pred EEECCCCCCCCCcEEE-----EcCCCEEEECCCC
Confidence 4689999755433333 5678899999998
No 21
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=59.32 E-value=4.1 Score=28.73 Aligned_cols=33 Identities=21% Similarity=0.613 Sum_probs=23.3
Q ss_pred cccccccCCceeEEEeecCCCCCCCceEeCCCCCeeE
Q 039987 12 LKACEKCFNSSKVLRTSHTRENPNRKFWKCKGCGAFK 48 (105)
Q Consensus 12 l~~Cp~Cg~~~avlrTSkT~~NPGRkFY~CpsC~FFq 48 (105)
..-||.|++- +..+.+..-++--|.|+.|+|-.
T Consensus 24 ~~FCPeCgNm----L~pked~~~~~l~~~CrtCgY~~ 56 (133)
T 3qt1_I 24 FRFCRDCNNM----LYPREDKENNRLLFECRTCSYVE 56 (133)
T ss_dssp CCBCTTTCCB----CBCCBCTTTCCBCCBCSSSCCBC
T ss_pred CeeCCCCCCE----eeECccCCCceeEEECCCCCCcE
Confidence 6789999743 33334443467889999999965
No 22
>3j21_e 50S ribosomal protein L37E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=54.66 E-value=3.7 Score=26.65 Aligned_cols=34 Identities=18% Similarity=0.422 Sum_probs=22.7
Q ss_pred ccccccCccccccccccCCceeEEEeecCCCCCCCceEeCCCCCe
Q 039987 2 SFSTSDNRTQLKACEKCFNSSKVLRTSHTRENPNRKFWKCKGCGA 46 (105)
Q Consensus 2 ~~~~~~n~~~l~~Cp~Cg~~~avlrTSkT~~NPGRkFY~CpsC~F 46 (105)
||+-++|+..-+.|.+||.. +.-+.- -+|.+|+|
T Consensus 7 SfGKr~~k~tH~lCrRCG~~-syH~qK----------~~Ca~CGy 40 (62)
T 3j21_e 7 TFGKRNSTPTHIRCRRCGRV-SYNVKK----------GYCAACGF 40 (62)
T ss_dssp HHCCCSSSCCCCBCSSSCSB-CEETTT----------TEETTTCT
T ss_pred cccccCCCCceeeecccCcc-hhcccc----------ccccccCC
Confidence 67788888568999999744 222211 25778887
No 23
>1vq8_1 50S ribosomal protein L37E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.2 PDB: 1vq4_1* 1vq5_1* 1vq6_1* 1vq7_1* 1s72_1* 1vq9_1* 1vqk_1* 1vql_1* 1vqm_1* 1vqn_1* 1vqo_1* 1vqp_1* 1yhq_1* 1yi2_1* 1yij_1* 1yit_1* 1yj9_1* 1yjn_1* 1yjw_1* 2otj_1* ...
Probab=54.10 E-value=3 Score=26.67 Aligned_cols=19 Identities=21% Similarity=0.438 Sum_probs=14.5
Q ss_pred ccccccCccccccccccCCc
Q 039987 2 SFSTSDNRTQLKACEKCFNS 21 (105)
Q Consensus 2 ~~~~~~n~~~l~~Cp~Cg~~ 21 (105)
||+-++|++ -+.|.+||..
T Consensus 8 SfGKr~~kt-H~~CrRCG~~ 26 (57)
T 1vq8_1 8 SQGKKNTTT-HTKCRRCGEK 26 (57)
T ss_dssp HHTTCCCCC-EEECTTTCSE
T ss_pred cccccCCCc-cccccccCCh
Confidence 677777765 8999999644
No 24
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=53.45 E-value=11 Score=24.76 Aligned_cols=36 Identities=28% Similarity=0.517 Sum_probs=24.1
Q ss_pred cccccccCCceeEEEeecCCCCCCCceEeCCCCCeeEecCC-CCCC
Q 039987 12 LKACEKCFNSSKVLRTSHTRENPNRKFWKCKGCGAFKWDDD-RKSS 56 (105)
Q Consensus 12 l~~Cp~Cg~~~avlrTSkT~~NPGRkFY~CpsC~FFqW~De-~~~~ 56 (105)
.-.||.|| .+.+.+.+ + .=|.|+.|+.-. ... ..|.
T Consensus 27 ~y~Cp~CG-~~~v~r~a-t------GiW~C~~Cg~~~-aggay~~~ 63 (83)
T 1vq8_Z 27 DHACPNCG-EDRVDRQG-T------GIWQCSYCDYKF-TGGSYKPE 63 (83)
T ss_dssp CEECSSSC-CEEEEEEE-T------TEEEETTTCCEE-ECCSSSSS
T ss_pred cCcCCCCC-CcceeccC-C------CeEECCCCCCEe-cCCEeccc
Confidence 45799996 55666665 2 389999999843 333 4444
No 25
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=52.59 E-value=5.4 Score=27.18 Aligned_cols=37 Identities=22% Similarity=0.527 Sum_probs=25.4
Q ss_pred ccccccccCCceeEEEeecCCCCCCCceEeCCCCCeeEecC
Q 039987 11 QLKACEKCFNSSKVLRTSHTRENPNRKFWKCKGCGAFKWDD 51 (105)
Q Consensus 11 ~l~~Cp~Cg~~~avlrTSkT~~NPGRkFY~CpsC~FFqW~D 51 (105)
.+.-||.||+-. ... .++.++...|.|+.|++-.-.+
T Consensus 3 ~~~FCp~CgnlL-~~~---~~~~~~~~~~~C~~C~y~~~~~ 39 (122)
T 1twf_I 3 TFRFCRDCNNML-YPR---EDKENNRLLFECRTCSYVEEAG 39 (122)
T ss_dssp CCCBCSSSCCBC-EEE---EETTTTEEEEECSSSSCEEECS
T ss_pred CCCcccccCccC-ccc---ccCcCCCCEEECCcCCCeeecC
Confidence 367899997442 222 2345677899999999977544
No 26
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=51.96 E-value=20 Score=22.63 Aligned_cols=51 Identities=18% Similarity=0.470 Sum_probs=33.7
Q ss_pred ccccccCCceeEEEeecCCCCCCCceEeCCCCCee-------EecCCCCCCccchhhhhhhhcccc
Q 039987 13 KACEKCFNSSKVLRTSHTRENPNRKFWKCKGCGAF-------KWDDDRKSSECNDFRGMVDRNMSE 71 (105)
Q Consensus 13 ~~Cp~Cg~~~avlrTSkT~~NPGRkFY~CpsC~FF-------qW~De~~~~~~~~~~~~~~~n~~~ 71 (105)
.-||.|+. +++.. ++..-..||.|++. .|++.-.+-.|..++...++|-.|
T Consensus 26 ~wCP~C~~--~~~~~------~~~~~v~C~~C~~~FC~~C~~~w~~~H~~~sC~~~~~w~~~n~~~ 83 (86)
T 2ct7_A 26 LWCAQCSF--GFIYE------REQLEATCPQCHQTFCVRCKRQWEEQHRGRSCEDFQNWKRMNSGP 83 (86)
T ss_dssp ECCSSSCC--CEECC------CSCSCEECTTTCCEECSSSCSBCCTTTTTSCHHHHHHHHHHHTCS
T ss_pred eECcCCCc--hheec------CCCCceEeCCCCCccccccCCchhhcCCCCChHHHHHHHHhCccc
Confidence 34998853 33322 12334789966652 476666677999999999998665
No 27
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=51.82 E-value=1.9 Score=24.43 Aligned_cols=41 Identities=15% Similarity=0.270 Sum_probs=22.9
Q ss_pred cccccccCCceeEEEeecCCCCCCCceEeCCCCCe-eEecCCC
Q 039987 12 LKACEKCFNSSKVLRTSHTRENPNRKFWKCKGCGA-FKWDDDR 53 (105)
Q Consensus 12 l~~Cp~Cg~~~avlrTSkT~~NPGRkFY~CpsC~F-FqW~De~ 53 (105)
.-.|+.|+. .-....+-.....|.+.|.|+.|+. |.+.+..
T Consensus 14 ~~~C~~C~k-~F~~~~~l~~~H~~~k~~~C~~C~k~f~~~~~~ 55 (62)
T 1vd4_A 14 SFKCPVCSS-TFTDLEANQLFDPMTGTFRCTFCHTEVEEDESA 55 (62)
T ss_dssp EEECSSSCC-EEEHHHHHHHEETTTTEEBCSSSCCBCEECTTC
T ss_pred CccCCCCCc-hhccHHHhHhhcCCCCCEECCCCCCccccCccc
Confidence 467999953 2111111112345678899998874 5555543
No 28
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=51.42 E-value=8.8 Score=28.96 Aligned_cols=27 Identities=33% Similarity=0.731 Sum_probs=18.3
Q ss_pred ccccccCCceeEEEeecCCCCCCCceEeCCCCC
Q 039987 13 KACEKCFNSSKVLRTSHTRENPNRKFWKCKGCG 45 (105)
Q Consensus 13 ~~Cp~Cg~~~avlrTSkT~~NPGRkFY~CpsC~ 45 (105)
..||.||.. ....+- . ||.-|=||.|.
T Consensus 235 ~pC~~CG~~-I~~~~~--~---gR~t~~CP~CQ 261 (262)
T 1k3x_A 235 EPCERCGSI-IEKTTL--S---SRPFYWCPGCQ 261 (262)
T ss_dssp SBCTTTCCB-CEEEEE--T---TEEEEECTTTC
T ss_pred CCCCCCCCE-eEEEEE--C---CCCeEECCCCC
Confidence 369999643 332222 1 99999999984
No 29
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=51.22 E-value=8.8 Score=29.08 Aligned_cols=27 Identities=19% Similarity=0.353 Sum_probs=18.3
Q ss_pred ccccccCCceeEEEeecCCCCCCCceEeCCCCC
Q 039987 13 KACEKCFNSSKVLRTSHTRENPNRKFWKCKGCG 45 (105)
Q Consensus 13 ~~Cp~Cg~~~avlrTSkT~~NPGRkFY~CpsC~ 45 (105)
..||.||.. ....+- -||.-|=||.|.
T Consensus 243 ~pC~~CG~~-I~~~~~-----~gR~t~~CP~CQ 269 (271)
T 2xzf_A 243 EKCSRCGAE-IQKIKV-----AGRGTHFCPVCQ 269 (271)
T ss_dssp SBCTTTCCB-CEEEEE-----TTEEEEECTTTS
T ss_pred CCCCCCCCE-eeEEEE-----CCCceEECCCCC
Confidence 569999643 332222 189999999984
No 30
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=49.92 E-value=9.5 Score=28.93 Aligned_cols=27 Identities=22% Similarity=0.581 Sum_probs=18.4
Q ss_pred ccccccCCceeEEEeecCCCCCCCceEeCCCCC
Q 039987 13 KACEKCFNSSKVLRTSHTRENPNRKFWKCKGCG 45 (105)
Q Consensus 13 ~~Cp~Cg~~~avlrTSkT~~NPGRkFY~CpsC~ 45 (105)
..||.||.. ....+- -||.-|=||.|.
T Consensus 241 ~pC~~CG~~-I~~~~~-----~gR~t~~CP~CQ 267 (268)
T 1k82_A 241 EPCRVCGTP-IVATKH-----AQRATFYCRQCQ 267 (268)
T ss_dssp SBCTTTCCB-CEEEEE-----TTEEEEECTTTC
T ss_pred CCCCCCCCE-eeEEEE-----CCCceEECCCCC
Confidence 569999633 332222 289999999984
No 31
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=49.81 E-value=10 Score=28.78 Aligned_cols=27 Identities=22% Similarity=0.396 Sum_probs=18.3
Q ss_pred ccccccCCceeEEEeecCCCCCCCceEeCCCCC
Q 039987 13 KACEKCFNSSKVLRTSHTRENPNRKFWKCKGCG 45 (105)
Q Consensus 13 ~~Cp~Cg~~~avlrTSkT~~NPGRkFY~CpsC~ 45 (105)
..||.||.. ....+- -||.-|=||.|.
T Consensus 236 ~pC~~CG~~-I~~~~~-----~gR~t~~CP~CQ 262 (266)
T 1ee8_A 236 LPCPACGRP-VERRVV-----AGRGTHFCPTCQ 262 (266)
T ss_dssp SBCTTTCCB-CEEEES-----SSCEEEECTTTT
T ss_pred CCCCCCCCE-eeEEEE-----CCCceEECCCCC
Confidence 569999633 322221 289999999885
No 32
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=47.43 E-value=11 Score=28.73 Aligned_cols=27 Identities=19% Similarity=0.458 Sum_probs=18.4
Q ss_pred ccccccCCceeEEEeecCCCCCCCceEeCCCCC
Q 039987 13 KACEKCFNSSKVLRTSHTRENPNRKFWKCKGCG 45 (105)
Q Consensus 13 ~~Cp~Cg~~~avlrTSkT~~NPGRkFY~CpsC~ 45 (105)
..||.|| .+....+- -||.-|=||.|.
T Consensus 246 ~pC~~CG-~~I~~~~~-----~gR~t~~CP~CQ 272 (273)
T 3u6p_A 246 NPCKRCG-TPIEKTVV-----AGRGTHYCPRCQ 272 (273)
T ss_dssp SBCTTTC-CBCEEEEE-----TTEEEEECTTTC
T ss_pred CCCCCCC-CeEEEEEE-----CCCCeEECCCCC
Confidence 5799996 33332222 289999999984
No 33
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=45.92 E-value=13 Score=26.88 Aligned_cols=29 Identities=17% Similarity=0.301 Sum_probs=20.8
Q ss_pred cccccccCCceeEEEeecCCCCCCCceEeCCCCCee
Q 039987 12 LKACEKCFNSSKVLRTSHTRENPNRKFWKCKGCGAF 47 (105)
Q Consensus 12 l~~Cp~Cg~~~avlrTSkT~~NPGRkFY~CpsC~FF 47 (105)
...||.||+... .++-.+ | -|.|-+|+.-
T Consensus 14 ~~~CP~Cg~~d~-~~~~~d----g--~~~C~~Cg~~ 42 (255)
T 1nui_A 14 HIPCDNCGSSDG-NSLFSD----G--HTFCYVCEKW 42 (255)
T ss_dssp EECCSSSCCSSC-EEEETT----S--CEEETTTCCE
T ss_pred CCcCCCCCCCCC-ceEeCC----C--CeecccCCCc
Confidence 678999987654 555532 4 3999999963
No 34
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=45.81 E-value=11 Score=24.51 Aligned_cols=38 Identities=26% Similarity=0.566 Sum_probs=26.0
Q ss_pred cccccccccCCceeEEEeecCCCCCCCceEeCC-CC---CeeEecCCCC
Q 039987 10 TQLKACEKCFNSSKVLRTSHTRENPNRKFWKCK-GC---GAFKWDDDRK 54 (105)
Q Consensus 10 ~~l~~Cp~Cg~~~avlrTSkT~~NPGRkFY~Cp-sC---~FFqW~De~~ 54 (105)
.+.+.||.|+ ++ +.|..+|+-|.| |. .| .+-.|.++..
T Consensus 7 ~~~~~CP~Cg-kp----~~W~~~~~~rPF--CSeRCr~iDLg~Wa~e~y 48 (68)
T 1lv3_A 7 TITVNCPTCG-KT----VVWGEISPFRPF--CSKRCQLIDLGEWAAEEK 48 (68)
T ss_dssp CCEEECTTTC-CE----EECSSSSSCCSS--SSHHHHHHHHSCSSSSSC
T ss_pred CCcCcCCCCC-Cc----ccccccCCCCcc--cCHHHHhhhHHHHhcCCc
Confidence 4578999995 43 336667999987 44 44 4668887754
No 35
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=45.42 E-value=16 Score=25.92 Aligned_cols=37 Identities=27% Similarity=0.476 Sum_probs=25.4
Q ss_pred cccccccCCceeEEEeecCCCCCCCceEeCCCCCeeEecCCCCCC
Q 039987 12 LKACEKCFNSSKVLRTSHTRENPNRKFWKCKGCGAFKWDDDRKSS 56 (105)
Q Consensus 12 l~~Cp~Cg~~~avlrTSkT~~NPGRkFY~CpsC~FFqW~De~~~~ 56 (105)
.-.||.|+ ...+.+++ + --|.|++|+.-.=-....|.
T Consensus 60 kytCPfCG-k~~vKR~a-v------GIW~C~~Cgk~fAGGAy~~~ 96 (116)
T 3cc2_Z 60 DHACPNCG-EDRVDRQG-T------GIWQCSYCDYKFTGGSYKPE 96 (116)
T ss_dssp CEECSSSC-CEEEEEEE-T------TEEEETTTCCEEECCSSSSS
T ss_pred CCcCCCCC-CceeEecC-c------eeEECCCCCCEEECCCcccc
Confidence 45799996 66788887 2 38999999975433324444
No 36
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=45.33 E-value=12 Score=24.77 Aligned_cols=25 Identities=20% Similarity=0.287 Sum_probs=17.4
Q ss_pred ccccccccCCceeEEEeecCCCCCCC
Q 039987 11 QLKACEKCFNSSKVLRTSHTRENPNR 36 (105)
Q Consensus 11 ~l~~Cp~Cg~~~avlrTSkT~~NPGR 36 (105)
...-||+||+ ..+.++|-+...-|.
T Consensus 29 ~k~FCp~CGn-~TL~Rvsvsvd~~G~ 53 (79)
T 2con_A 29 NRVFCGHCGN-KTLKKVSVTINDDGT 53 (79)
T ss_dssp SCCSCSSSCC-SCCEEEECBCCSSCC
T ss_pred ccccccccCc-ccceEEEEEECCCCc
Confidence 3678999986 477777776444365
No 37
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=45.32 E-value=5.4 Score=29.02 Aligned_cols=9 Identities=33% Similarity=0.659 Sum_probs=2.4
Q ss_pred CCCCCCceE
Q 039987 31 RENPNRKFW 39 (105)
Q Consensus 31 ~~NPGRkFY 39 (105)
++||+|+||
T Consensus 224 G~~~~r~f~ 232 (233)
T 4efa_E 224 GPSKTRKFF 232 (233)
T ss_dssp CCC------
T ss_pred CcCCCCCCC
Confidence 599999998
No 38
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=44.47 E-value=12 Score=24.34 Aligned_cols=28 Identities=36% Similarity=0.675 Sum_probs=21.1
Q ss_pred cccccccCCceeEEEeecCCCCCCCceEeCCCCCee
Q 039987 12 LKACEKCFNSSKVLRTSHTRENPNRKFWKCKGCGAF 47 (105)
Q Consensus 12 l~~Cp~Cg~~~avlrTSkT~~NPGRkFY~CpsC~FF 47 (105)
.-.||.|+ ...+.+++ + --|.|.+|++-
T Consensus 27 ky~C~fCg-k~~vkR~a-~------GIW~C~~C~~~ 54 (73)
T 1ffk_W 27 KYKCPVCG-FPKLKRAS-T------SIWVCGHCGYK 54 (73)
T ss_pred CccCCCCC-CceeEEEE-e------EEEECCCCCcE
Confidence 45799995 66888776 2 34999999864
No 39
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=44.26 E-value=11 Score=18.49 Aligned_cols=13 Identities=15% Similarity=0.600 Sum_probs=9.9
Q ss_pred CCCceEeCCCCCe
Q 039987 34 PNRKFWKCKGCGA 46 (105)
Q Consensus 34 PGRkFY~CpsC~F 46 (105)
.|.+.|.|+.|+.
T Consensus 5 ~~~k~~~C~~C~k 17 (37)
T 2elm_A 5 SSGHLYYCSQCHY 17 (37)
T ss_dssp SSSCEEECSSSSC
T ss_pred CCCcCeECCCCCc
Confidence 4567899998864
No 40
>4a18_A RPL37, ribosomal protein L37; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_A 4a1b_A 4a1d_A
Probab=42.21 E-value=6 Score=27.50 Aligned_cols=33 Identities=21% Similarity=0.601 Sum_probs=22.6
Q ss_pred ccccccCccccccccccCCceeEEEeecCCCCCCCceEeCCCCCe
Q 039987 2 SFSTSDNRTQLKACEKCFNSSKVLRTSHTRENPNRKFWKCKGCGA 46 (105)
Q Consensus 2 ~~~~~~n~~~l~~Cp~Cg~~~avlrTSkT~~NPGRkFY~CpsC~F 46 (105)
||+-++|++ -+.|.+||...--+..+ +|.+|+|
T Consensus 7 SfGKr~~Kt-HtlCrRCG~~syH~qK~-----------~Ca~CGy 39 (94)
T 4a18_A 7 AFGKRHQKT-HTLCRRCGKATYHKQKL-----------RCAACGY 39 (94)
T ss_dssp HHTTCCCCC-EEECTTTCSEEEETTTT-----------EESSSCG
T ss_pred CccccCCCc-cceecCcCchhhhhccc-----------cccccCC
Confidence 677777776 89999997442222111 7889998
No 41
>3iz5_l 60S ribosomal protein L37 (L37E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_l 3izc_l 3izs_l 3o58_d 3o5h_d 3u5e_j 3u5i_j 4b6a_j 1s1i_Y 3jyw_Y
Probab=41.30 E-value=6 Score=27.50 Aligned_cols=33 Identities=36% Similarity=0.673 Sum_probs=22.7
Q ss_pred ccccccCccccccccccCCceeEEEeecCCCCCCCceEeCCCCCe
Q 039987 2 SFSTSDNRTQLKACEKCFNSSKVLRTSHTRENPNRKFWKCKGCGA 46 (105)
Q Consensus 2 ~~~~~~n~~~l~~Cp~Cg~~~avlrTSkT~~NPGRkFY~CpsC~F 46 (105)
||+-++|++ -+.|.+||...--+..+ +|.+|+|
T Consensus 7 SfGKr~~Kt-HtlCrRCG~~syH~qK~-----------~Ca~CGy 39 (94)
T 3iz5_l 7 SFGKRRNKT-HTLCVRCGRRSFHLQKS-----------TCSSCGY 39 (94)
T ss_dssp HHHHCCCCS-EEECTTTCSEEEEGGGT-----------EETTTCS
T ss_pred CccccCCCc-cceecCcCchhhhcccc-----------cccccCC
Confidence 677777776 89999997443222222 7889997
No 42
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.65 E-value=18 Score=17.19 Aligned_cols=13 Identities=15% Similarity=0.577 Sum_probs=9.8
Q ss_pred CCCceEeCCCCCe
Q 039987 34 PNRKFWKCKGCGA 46 (105)
Q Consensus 34 PGRkFY~CpsC~F 46 (105)
.|.+.|.|+.|+.
T Consensus 5 ~~~k~~~C~~C~k 17 (36)
T 2elv_A 5 SSGLLYDCHICER 17 (36)
T ss_dssp CCCCCEECSSSCC
T ss_pred CCCCCeECCCCCC
Confidence 4567899998864
No 43
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.62 E-value=17 Score=17.36 Aligned_cols=13 Identities=31% Similarity=0.570 Sum_probs=9.6
Q ss_pred CCCceEeCCCCCe
Q 039987 34 PNRKFWKCKGCGA 46 (105)
Q Consensus 34 PGRkFY~CpsC~F 46 (105)
.|.+.|.|+.|+.
T Consensus 5 ~~~k~~~C~~C~k 17 (36)
T 2elq_A 5 SSGKPFKCSLCEY 17 (36)
T ss_dssp CCCCSEECSSSSC
T ss_pred CCCCCccCCCCCc
Confidence 4567799998864
No 44
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=39.51 E-value=16 Score=17.45 Aligned_cols=13 Identities=23% Similarity=0.631 Sum_probs=9.6
Q ss_pred CCCceEeCCCCCe
Q 039987 34 PNRKFWKCKGCGA 46 (105)
Q Consensus 34 PGRkFY~CpsC~F 46 (105)
.|.+.|.|+.|+.
T Consensus 7 ~~~k~~~C~~C~k 19 (37)
T 1p7a_A 7 TGIKPFQCPDCDR 19 (37)
T ss_dssp CCSSSBCCTTTCC
T ss_pred CCCCCccCCCCCc
Confidence 4567799998863
No 45
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.35 E-value=19 Score=17.18 Aligned_cols=13 Identities=23% Similarity=0.728 Sum_probs=9.6
Q ss_pred CCCceEeCCCCCe
Q 039987 34 PNRKFWKCKGCGA 46 (105)
Q Consensus 34 PGRkFY~CpsC~F 46 (105)
.+.+.|.|+.|+.
T Consensus 5 ~~~k~~~C~~C~k 17 (36)
T 2els_A 5 SSGKIFTCEYCNK 17 (36)
T ss_dssp SCCCCEECTTTCC
T ss_pred CCCCCEECCCCCc
Confidence 4567799998864
No 46
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=37.62 E-value=14 Score=17.22 Aligned_cols=12 Identities=17% Similarity=0.304 Sum_probs=8.9
Q ss_pred CCceEeCCCCCe
Q 039987 35 NRKFWKCKGCGA 46 (105)
Q Consensus 35 GRkFY~CpsC~F 46 (105)
|.+.|.|+.|+.
T Consensus 4 ~~k~~~C~~C~k 15 (35)
T 2elx_A 4 GSSGYVCALCLK 15 (35)
T ss_dssp CCCSEECSSSCC
T ss_pred CCCCeECCCCcc
Confidence 556799998864
No 47
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.26 E-value=16 Score=17.30 Aligned_cols=13 Identities=31% Similarity=0.682 Sum_probs=9.5
Q ss_pred CCCceEeCCCCCe
Q 039987 34 PNRKFWKCKGCGA 46 (105)
Q Consensus 34 PGRkFY~CpsC~F 46 (105)
.|.+.|.|+.|+.
T Consensus 5 ~~~k~~~C~~C~k 17 (36)
T 2elt_A 5 SSGKPYKCPQCSY 17 (36)
T ss_dssp CCCCSEECSSSSC
T ss_pred CCCCCCCCCCCCc
Confidence 3556799998864
No 48
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=36.19 E-value=16 Score=17.20 Aligned_cols=12 Identities=17% Similarity=0.606 Sum_probs=8.8
Q ss_pred CCceEeCCCCCe
Q 039987 35 NRKFWKCKGCGA 46 (105)
Q Consensus 35 GRkFY~CpsC~F 46 (105)
|.+.|.|+.|+.
T Consensus 4 ~~k~~~C~~C~k 15 (35)
T 1srk_A 4 GKRPFVCRICLS 15 (35)
T ss_dssp CCSCEECSSSCC
T ss_pred CCcCeeCCCCCc
Confidence 556799998764
No 49
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=35.65 E-value=15 Score=29.42 Aligned_cols=62 Identities=23% Similarity=0.504 Sum_probs=36.6
Q ss_pred cccccccCCceeEEEeecCCCC-CCCceEeCCCCCe-eEecCC-CCCC---ccchhhhhhhhccccchhhhHh
Q 039987 12 LKACEKCFNSSKVLRTSHTREN-PNRKFWKCKGCGA-FKWDDD-RKSS---ECNDFRGMVDRNMSENKIDILL 78 (105)
Q Consensus 12 l~~Cp~Cg~~~avlrTSkT~~N-PGRkFY~CpsC~F-FqW~De-~~~~---~~~~~~~~~~~n~~~~~~~~~~ 78 (105)
..-||.||..+.. +.+.| |-.-|| |+.|+= |+-... ...+ ..++..+|+.|=-|++..|.++
T Consensus 34 n~yCPnCG~~~l~----~f~nN~PVaDF~-C~~C~EeyELKSk~~~~~~~I~dGAY~Tmi~Ri~s~~NPnFff 101 (257)
T 4esj_A 34 QSYCPNCGNNPLN----HFENNRPVADFY-CNHCSEEFELKSKKGNFSSTINDGAYATMMKRVQADNNPNFFF 101 (257)
T ss_dssp HCCCTTTCCSSCE----EC----CCCEEE-CTTTCCEEEEEEEESSCCSEEEEEEHHHHHHHHHTTCCCEEEE
T ss_pred CCcCCCCCChhhh----hccCCCcccccc-cCCcchhheeccccCccCccccCchHHHHHHHHhccCCCCEEE
Confidence 5679999865432 23333 555565 888862 221111 1122 5678889999988888877654
No 50
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.02 E-value=20 Score=16.88 Aligned_cols=13 Identities=31% Similarity=0.652 Sum_probs=9.2
Q ss_pred CCCCceEeCCCCC
Q 039987 33 NPNRKFWKCKGCG 45 (105)
Q Consensus 33 NPGRkFY~CpsC~ 45 (105)
..+.+.|.|+.|+
T Consensus 4 h~~~~~~~C~~C~ 16 (36)
T 2elr_A 4 GSSGKTHLCDMCG 16 (36)
T ss_dssp CCCCSSCBCTTTC
T ss_pred CCCCCCeecCcCC
Confidence 3456678898776
No 51
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=33.40 E-value=36 Score=21.49 Aligned_cols=31 Identities=23% Similarity=0.342 Sum_probs=20.0
Q ss_pred cccccccccCCceeEEEeecCCCCCCCceEeCCCCCeeE
Q 039987 10 TQLKACEKCFNSSKVLRTSHTRENPNRKFWKCKGCGAFK 48 (105)
Q Consensus 10 ~~l~~Cp~Cg~~~avlrTSkT~~NPGRkFY~CpsC~FFq 48 (105)
++..+||.|++. ..+ +..+....|++|+...
T Consensus 6 LeiL~CP~ck~~-L~~-------~~~~~~LiC~~cg~~Y 36 (69)
T 2pk7_A 6 LDILACPICKGP-LKL-------SADKTELISKGAGLAY 36 (69)
T ss_dssp GGTCCCTTTCCC-CEE-------CTTSSEEEETTTTEEE
T ss_pred HhheeCCCCCCc-CeE-------eCCCCEEEcCCCCcEe
Confidence 457799999743 222 1235678899887543
No 52
>1isu_A High potential iron sulfur protein; electron transfer(iron-sulfur protein); 1.50A {Rhodocyclus tenuis} SCOP: g.35.1.1
Probab=33.26 E-value=11 Score=23.86 Aligned_cols=28 Identities=25% Similarity=0.609 Sum_probs=22.2
Q ss_pred eCCCCCeeE-ecCCCCCCccchhhh--hhhh
Q 039987 40 KCKGCGAFK-WDDDRKSSECNDFRG--MVDR 67 (105)
Q Consensus 40 ~CpsC~FFq-W~De~~~~~~~~~~~--~~~~ 67 (105)
.|..|.||+ =.+...++.|.+|.+ .|..
T Consensus 21 ~C~nC~~f~pg~~~~~~g~C~vf~G~k~V~~ 51 (62)
T 1isu_A 21 KCSGCAQFVPGASPTAAGGCKVIPGDNQIAP 51 (62)
T ss_dssp CGGGBTTEECCSSTTSCBEETTSTTCCCBCT
T ss_pred ccccCcCcccCCCCCCCCCCcCCCCCceeCC
Confidence 477999999 566677889999988 6643
No 53
>2au3_A DNA primase; zinc ribbon, toprim, RNA polymerase, DNA replication, transf; HET: DNA; 2.00A {Aquifex aeolicus}
Probab=32.32 E-value=30 Score=27.15 Aligned_cols=29 Identities=24% Similarity=0.659 Sum_probs=20.5
Q ss_pred cccccccCCceeEEEeecCCCCCCCceEeCCCCC
Q 039987 12 LKACEKCFNSSKVLRTSHTRENPNRKFWKCKGCG 45 (105)
Q Consensus 12 l~~Cp~Cg~~~avlrTSkT~~NPGRkFY~CpsC~ 45 (105)
...||-|+.+...... ||.+.+|.|-+|+
T Consensus 34 ~~~CPfh~ektpSf~V-----~~~k~~~~CFgCg 62 (407)
T 2au3_A 34 RTNCPFHPDDTPSFYV-----SPSKQIFKCFGCG 62 (407)
T ss_dssp EECCSSSCCSSCCEEE-----ETTTTEEEETTTC
T ss_pred EeeCcCCCCCCCeEEE-----ECCCCEEEECCCC
Confidence 3579999755333333 4677899999997
No 54
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.85 E-value=20 Score=17.13 Aligned_cols=12 Identities=25% Similarity=0.520 Sum_probs=9.0
Q ss_pred CCceEeCCCCCe
Q 039987 35 NRKFWKCKGCGA 46 (105)
Q Consensus 35 GRkFY~CpsC~F 46 (105)
|.+.|.|+.|+.
T Consensus 6 ~~k~~~C~~C~k 17 (37)
T 2elp_A 6 SGRAMKCPYCDF 17 (37)
T ss_dssp CCCCEECSSSSC
T ss_pred CCCCeECCCCCh
Confidence 456799998864
No 55
>3mly_P HIV-1 GP120 third variable region (V3) crown; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.70A {Human immunodeficiency virus 1} PDB: 2b1h_P 3mlu_P 3ujj_P
Probab=30.51 E-value=17 Score=17.99 Aligned_cols=9 Identities=22% Similarity=0.641 Sum_probs=7.0
Q ss_pred CCCCCceEe
Q 039987 32 ENPNRKFWK 40 (105)
Q Consensus 32 ~NPGRkFY~ 40 (105)
--|||.||+
T Consensus 9 iGpG~~fy~ 17 (23)
T 3mly_P 9 IRPRQAFYA 17 (26)
T ss_pred ecCCeeEEe
Confidence 358999995
No 56
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=30.46 E-value=34 Score=18.21 Aligned_cols=17 Identities=24% Similarity=0.569 Sum_probs=12.1
Q ss_pred CCCCCCCceEeCCCCCe
Q 039987 30 TRENPNRKFWKCKGCGA 46 (105)
Q Consensus 30 T~~NPGRkFY~CpsC~F 46 (105)
.....+.+.|.|+.|+-
T Consensus 4 ~~~~~~~k~~~C~~C~k 20 (54)
T 2eps_A 4 GSSGSVGKPYICQSCGK 20 (54)
T ss_dssp CCCCCSSCCEECSSSCC
T ss_pred CCCCCCCCCeECCCCCc
Confidence 34556778899998863
No 57
>1vzi_A Desulfoferrodoxin; ferrocyanide, microspectrophotometry, redox states, photoreduction, dinuclear iron cluster, oxidoreductase; 1.15A {Desulfovibrio baarsii} SCOP: b.1.13.1 g.41.5.2 PDB: 1vzh_A* 1vzg_A 2ji1_A 2ji2_A 2ji3_A 1dfx_A
Probab=30.30 E-value=19 Score=24.75 Aligned_cols=14 Identities=29% Similarity=0.688 Sum_probs=11.3
Q ss_pred CceEeCCCCCeeEe
Q 039987 36 RKFWKCKGCGAFKW 49 (105)
Q Consensus 36 RkFY~CpsC~FFqW 49 (105)
-+||+|+.|+-..-
T Consensus 5 ~~fYkC~~CGnive 18 (126)
T 1vzi_A 5 LQVYKCEVCGNIVE 18 (126)
T ss_dssp TCEEECTTTCCEEE
T ss_pred CcEEEcCCCCeEEE
Confidence 47999999976664
No 58
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=30.19 E-value=14 Score=23.06 Aligned_cols=24 Identities=25% Similarity=0.639 Sum_probs=15.3
Q ss_pred cccccccCCceeEEEeecCCCCCCCceEeCCCCCeeE
Q 039987 12 LKACEKCFNSSKVLRTSHTRENPNRKFWKCKGCGAFK 48 (105)
Q Consensus 12 l~~Cp~Cg~~~avlrTSkT~~NPGRkFY~CpsC~FFq 48 (105)
+..||.||.. -+.=..|+.|||..
T Consensus 30 l~~c~~cGe~-------------~~~H~vc~~CG~Y~ 53 (60)
T 3v2d_5 30 LVPCPECKAM-------------KPPHTVCPECGYYA 53 (60)
T ss_dssp CEECTTTCCE-------------ECTTSCCTTTCEET
T ss_pred eeECCCCCCe-------------ecceEEcCCCCcCC
Confidence 8899999621 12234588888753
No 59
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=29.88 E-value=15 Score=16.09 Aligned_cols=8 Identities=38% Similarity=0.816 Sum_probs=5.3
Q ss_pred eEeCCCCC
Q 039987 38 FWKCKGCG 45 (105)
Q Consensus 38 FY~CpsC~ 45 (105)
.|.|+.|+
T Consensus 2 ~~~C~~C~ 9 (29)
T 2m0e_A 2 EHKCPHCD 9 (29)
T ss_dssp CCCCSSCC
T ss_pred CCcCCCCC
Confidence 46777665
No 60
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=29.85 E-value=37 Score=16.62 Aligned_cols=14 Identities=43% Similarity=0.926 Sum_probs=10.2
Q ss_pred CCCCceEeCCCCCe
Q 039987 33 NPNRKFWKCKGCGA 46 (105)
Q Consensus 33 NPGRkFY~CpsC~F 46 (105)
..|.+.|.|+.|+-
T Consensus 6 H~~~k~~~C~~C~k 19 (42)
T 2en2_A 6 SGGEKPYKCETCGA 19 (42)
T ss_dssp CCSSCSEECTTTCC
T ss_pred cCCCCCEeCCCcCh
Confidence 34677899998863
No 61
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=29.78 E-value=33 Score=21.78 Aligned_cols=30 Identities=10% Similarity=0.169 Sum_probs=19.5
Q ss_pred cccccccccCCceeEEEeecCCCCCCCceEeCCCCCee
Q 039987 10 TQLKACEKCFNSSKVLRTSHTRENPNRKFWKCKGCGAF 47 (105)
Q Consensus 10 ~~l~~Cp~Cg~~~avlrTSkT~~NPGRkFY~CpsC~FF 47 (105)
++..+||.|++. ..+ . ..+....|++|+..
T Consensus 6 L~iL~CP~ck~~-L~~--~-----~~~~~LiC~~cg~~ 35 (70)
T 2js4_A 6 LDILVCPVCKGR-LEF--Q-----RAQAELVCNADRLA 35 (70)
T ss_dssp CCCCBCTTTCCB-EEE--E-----TTTTEEEETTTTEE
T ss_pred hhheECCCCCCc-CEE--e-----CCCCEEEcCCCCce
Confidence 457799999753 222 1 23567889988754
No 62
>3uji_P Envelope glycoprotein GP160; IG domains, antibody FAB, antigen binding, the third variabl of HIV-1 GP120, immune system; HET: NAG FUC; 1.60A {Hiv-1 M} PDB: 3mlw_P 1f58_P 3mlx_P* 1ai1_P 1acy_P 2b1a_P 3mlt_P
Probab=29.55 E-value=18 Score=17.88 Aligned_cols=9 Identities=33% Similarity=0.785 Sum_probs=7.0
Q ss_pred CCCCCceEe
Q 039987 32 ENPNRKFWK 40 (105)
Q Consensus 32 ~NPGRkFY~ 40 (105)
--|||-||+
T Consensus 9 iGpG~~fy~ 17 (23)
T 3uji_P 9 IGPGRAFYT 17 (26)
T ss_pred ecCCeeEEe
Confidence 358999995
No 63
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=28.73 E-value=22 Score=15.71 Aligned_cols=9 Identities=22% Similarity=0.722 Sum_probs=6.0
Q ss_pred eEeCCCCCe
Q 039987 38 FWKCKGCGA 46 (105)
Q Consensus 38 FY~CpsC~F 46 (105)
.|.|+.|+-
T Consensus 2 ~~~C~~C~k 10 (29)
T 1rik_A 2 KFACPECPK 10 (29)
T ss_dssp CEECSSSSC
T ss_pred CccCCCCCc
Confidence 477877753
No 64
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.34 E-value=18 Score=17.24 Aligned_cols=13 Identities=15% Similarity=0.572 Sum_probs=9.2
Q ss_pred CCCceEeCCCCCe
Q 039987 34 PNRKFWKCKGCGA 46 (105)
Q Consensus 34 PGRkFY~CpsC~F 46 (105)
.|.+.|.|+.|+-
T Consensus 5 ~~~k~~~C~~C~k 17 (37)
T 2elo_A 5 SSGRSYSCPVCEK 17 (37)
T ss_dssp CCCCCCEETTTTE
T ss_pred CCCCCcCCCCCCC
Confidence 3556799998863
No 65
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=28.27 E-value=31 Score=21.79 Aligned_cols=31 Identities=19% Similarity=0.324 Sum_probs=19.8
Q ss_pred cccccccccCCceeEEEeecCCCCCCCceEeCCCCCeeE
Q 039987 10 TQLKACEKCFNSSKVLRTSHTRENPNRKFWKCKGCGAFK 48 (105)
Q Consensus 10 ~~l~~Cp~Cg~~~avlrTSkT~~NPGRkFY~CpsC~FFq 48 (105)
++..+||.|++. ..+ . ..+....|++|+...
T Consensus 6 L~iL~CP~ck~~-L~~--~-----~~~~~LiC~~cg~~Y 36 (68)
T 2hf1_A 6 LEILVCPLCKGP-LVF--D-----KSKDELICKGDRLAF 36 (68)
T ss_dssp EEECBCTTTCCB-CEE--E-----TTTTEEEETTTTEEE
T ss_pred hhheECCCCCCc-CeE--e-----CCCCEEEcCCCCcEe
Confidence 457799999743 222 1 235678899887543
No 66
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=28.27 E-value=32 Score=17.67 Aligned_cols=17 Identities=29% Similarity=0.532 Sum_probs=12.1
Q ss_pred CCCCCCCceEeCCCCCe
Q 039987 30 TRENPNRKFWKCKGCGA 46 (105)
Q Consensus 30 T~~NPGRkFY~CpsC~F 46 (105)
.....+.+.|.|+.|+.
T Consensus 4 ~~~~~~~k~~~C~~C~k 20 (48)
T 2epr_A 4 GSSGRTRKQVACEICGK 20 (48)
T ss_dssp CSCCCCCCSEEETTTTE
T ss_pred CCCCCCCcCeeCCCCCc
Confidence 34556777899998864
No 67
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33
Probab=28.16 E-value=39 Score=23.27 Aligned_cols=27 Identities=15% Similarity=0.426 Sum_probs=17.9
Q ss_pred cccccCCceeEEEeecCCCCCCCceEeCCCCCeeEec
Q 039987 14 ACEKCFNSSKVLRTSHTRENPNRKFWKCKGCGAFKWD 50 (105)
Q Consensus 14 ~Cp~Cg~~~avlrTSkT~~NPGRkFY~CpsC~FFqW~ 50 (105)
.||.|+..... ....|.|+.|+.|...
T Consensus 4 ~Cp~C~~~~~~----------~~~~~~C~~~~~~~~~ 30 (269)
T 1p91_A 4 SCPLCHQPLSR----------EKNSYICPQRHQFDMA 30 (269)
T ss_dssp BCTTTCCBCEE----------ETTEEECTTCCEEEBC
T ss_pred cCCCCCcccee----------CCCEEECCCCCcCCcC
Confidence 69999643211 2247999999888653
No 68
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=28.00 E-value=42 Score=21.13 Aligned_cols=30 Identities=3% Similarity=-0.014 Sum_probs=19.3
Q ss_pred cccccccccCCceeEEEeecCCCCCCCceEeCCCCCee
Q 039987 10 TQLKACEKCFNSSKVLRTSHTRENPNRKFWKCKGCGAF 47 (105)
Q Consensus 10 ~~l~~Cp~Cg~~~avlrTSkT~~NPGRkFY~CpsC~FF 47 (105)
++..+||.|++. ..+- .......|++|+..
T Consensus 6 L~iL~CP~ck~~-L~~~-------~~~~~LiC~~cg~~ 35 (68)
T 2jr6_A 6 LDILVCPVTKGR-LEYH-------QDKQELWSRQAKLA 35 (68)
T ss_dssp SCCCBCSSSCCB-CEEE-------TTTTEEEETTTTEE
T ss_pred hhheECCCCCCc-CeEe-------CCCCEEEcCCCCcE
Confidence 457899999743 2221 23467889988754
No 69
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.93 E-value=34 Score=20.46 Aligned_cols=9 Identities=44% Similarity=0.922 Sum_probs=3.9
Q ss_pred CceEeCCCC
Q 039987 36 RKFWKCKGC 44 (105)
Q Consensus 36 RkFY~CpsC 44 (105)
.+.|.|+.|
T Consensus 78 ~~~~~C~~C 86 (115)
T 2dmi_A 78 QKVLKCMYC 86 (115)
T ss_dssp CSSCBCSSS
T ss_pred CcceECCCC
Confidence 334444444
No 70
>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.85 E-value=26 Score=17.49 Aligned_cols=13 Identities=38% Similarity=0.841 Sum_probs=9.8
Q ss_pred CCCceEeCCCCCe
Q 039987 34 PNRKFWKCKGCGA 46 (105)
Q Consensus 34 PGRkFY~CpsC~F 46 (105)
.|.+.|.|+.|+-
T Consensus 8 ~~~k~~~C~~C~k 20 (44)
T 2emb_A 8 HTRKRYECSKCQA 20 (44)
T ss_dssp CCCSSEECTTTCC
T ss_pred CCCCCeECCCCCC
Confidence 4567799998863
No 71
>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B
Probab=27.48 E-value=18 Score=19.50 Aligned_cols=11 Identities=27% Similarity=0.739 Sum_probs=8.4
Q ss_pred CCceEeCCCCC
Q 039987 35 NRKFWKCKGCG 45 (105)
Q Consensus 35 GRkFY~CpsC~ 45 (105)
|.+.|.|+.|+
T Consensus 5 gekp~~C~~Cg 15 (36)
T 1fv5_A 5 KPARFMCLPCG 15 (36)
T ss_dssp SCCCCEETTTT
T ss_pred CccCeECCCCC
Confidence 56778888776
No 72
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=27.46 E-value=24 Score=15.62 Aligned_cols=9 Identities=33% Similarity=0.748 Sum_probs=6.0
Q ss_pred ceEeCCCCC
Q 039987 37 KFWKCKGCG 45 (105)
Q Consensus 37 kFY~CpsC~ 45 (105)
+.|.|+.|+
T Consensus 2 k~~~C~~C~ 10 (27)
T 2kvh_A 2 KPFSCSLCP 10 (27)
T ss_dssp CCEECSSSS
T ss_pred cCccCCCcC
Confidence 357787775
No 73
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=27.31 E-value=25 Score=15.36 Aligned_cols=8 Identities=50% Similarity=1.257 Sum_probs=5.5
Q ss_pred eEeCCCCC
Q 039987 38 FWKCKGCG 45 (105)
Q Consensus 38 FY~CpsC~ 45 (105)
.|.|+.|+
T Consensus 2 ~~~C~~C~ 9 (29)
T 2m0f_A 2 PLKCRECG 9 (29)
T ss_dssp CEECTTTS
T ss_pred CccCCCCC
Confidence 47777765
No 74
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Probab=27.21 E-value=27 Score=17.04 Aligned_cols=13 Identities=23% Similarity=0.631 Sum_probs=9.6
Q ss_pred CCCceEeCCCCCe
Q 039987 34 PNRKFWKCKGCGA 46 (105)
Q Consensus 34 PGRkFY~CpsC~F 46 (105)
.|.+.|.|+.|+-
T Consensus 7 ~~~~~~~C~~C~k 19 (42)
T 2epc_A 7 GGETPYLCGQCGK 19 (42)
T ss_dssp CSSCCEECSSSCC
T ss_pred CCCCCeECCCCCc
Confidence 4567799998863
No 75
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.15 E-value=35 Score=17.10 Aligned_cols=14 Identities=29% Similarity=0.821 Sum_probs=10.4
Q ss_pred CCCCceEeCCCCCe
Q 039987 33 NPNRKFWKCKGCGA 46 (105)
Q Consensus 33 NPGRkFY~CpsC~F 46 (105)
..|.+.|.|+.|+-
T Consensus 7 h~~~k~~~C~~C~k 20 (45)
T 2epu_A 7 GTGQKPFECTHCGK 20 (45)
T ss_dssp CCSCCSEEETTTTE
T ss_pred CCCCcCccCCCCCC
Confidence 45667899998864
No 76
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.71 E-value=44 Score=21.32 Aligned_cols=7 Identities=43% Similarity=1.298 Sum_probs=3.6
Q ss_pred ccccccC
Q 039987 13 KACEKCF 19 (105)
Q Consensus 13 ~~Cp~Cg 19 (105)
..|+.|.
T Consensus 29 ~~C~~C~ 35 (104)
T 2ctt_A 29 DTCERCN 35 (104)
T ss_dssp EECSSSS
T ss_pred eECCCCc
Confidence 4555553
No 77
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=26.36 E-value=30 Score=21.44 Aligned_cols=12 Identities=17% Similarity=0.163 Sum_probs=9.4
Q ss_pred CccccccccccC
Q 039987 8 NRTQLKACEKCF 19 (105)
Q Consensus 8 n~~~l~~Cp~Cg 19 (105)
..+|.++||.||
T Consensus 19 ~~lP~IrCpyCG 30 (48)
T 4ayb_P 19 KVLPGVRCPYCG 30 (48)
T ss_dssp CCCSSSCCTTTC
T ss_pred hhCCCcccCccC
Confidence 366788999996
No 78
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.23 E-value=28 Score=17.58 Aligned_cols=14 Identities=21% Similarity=0.783 Sum_probs=10.1
Q ss_pred CCCCceEeCCCCCe
Q 039987 33 NPNRKFWKCKGCGA 46 (105)
Q Consensus 33 NPGRkFY~CpsC~F 46 (105)
..|.+.|.|+.|+-
T Consensus 7 H~~~k~~~C~~C~k 20 (46)
T 2em4_A 7 GTGQRPYECIECGK 20 (46)
T ss_dssp CCCSSSEECSSSCC
T ss_pred cCCCcCcCCCCCCC
Confidence 34667799998863
No 79
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Probab=26.18 E-value=28 Score=17.10 Aligned_cols=13 Identities=23% Similarity=0.820 Sum_probs=9.4
Q ss_pred CCCceEeCCCCCe
Q 039987 34 PNRKFWKCKGCGA 46 (105)
Q Consensus 34 PGRkFY~CpsC~F 46 (105)
.|.+.|.|+.|+-
T Consensus 6 ~~~k~~~C~~C~k 18 (42)
T 2el5_A 6 SGENPYECSECGK 18 (42)
T ss_dssp SSCCSEECSSSCC
T ss_pred CCCCCccCCCcCh
Confidence 3566799998863
No 80
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=25.96 E-value=28 Score=15.21 Aligned_cols=10 Identities=40% Similarity=1.016 Sum_probs=6.5
Q ss_pred ceEeCCCCCe
Q 039987 37 KFWKCKGCGA 46 (105)
Q Consensus 37 kFY~CpsC~F 46 (105)
+.|.|+.|+-
T Consensus 2 k~~~C~~C~~ 11 (30)
T 2m0d_A 2 KPYQCDYCGR 11 (30)
T ss_dssp CCEECTTTCC
T ss_pred cCccCCCCCc
Confidence 4577877753
No 81
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.95 E-value=29 Score=17.09 Aligned_cols=13 Identities=23% Similarity=0.698 Sum_probs=9.7
Q ss_pred CCCceEeCCCCCe
Q 039987 34 PNRKFWKCKGCGA 46 (105)
Q Consensus 34 PGRkFY~CpsC~F 46 (105)
.|.+.|.|+.|+.
T Consensus 8 ~~~k~~~C~~C~k 20 (44)
T 2eof_A 8 TGEKPYECNECQK 20 (44)
T ss_dssp SCCCSEECTTTCC
T ss_pred CCCCCeECCCCCc
Confidence 4567799998863
No 82
>3mlz_P HIV-1 GP120 third variable region (V3) crown; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 2.99A {Human immunodeficiency virus 1}
Probab=25.52 E-value=17 Score=18.23 Aligned_cols=8 Identities=38% Similarity=0.974 Sum_probs=6.5
Q ss_pred CCCCceEe
Q 039987 33 NPNRKFWK 40 (105)
Q Consensus 33 NPGRkFY~ 40 (105)
=|||.||+
T Consensus 11 GpG~~fy~ 18 (25)
T 3mlz_P 11 GPGRAFYA 18 (26)
T ss_dssp CTTCCCCC
T ss_pred cCCeeEEE
Confidence 58999985
No 83
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.17 E-value=32 Score=16.85 Aligned_cols=13 Identities=23% Similarity=1.032 Sum_probs=9.6
Q ss_pred CCCceEeCCCCCe
Q 039987 34 PNRKFWKCKGCGA 46 (105)
Q Consensus 34 PGRkFY~CpsC~F 46 (105)
.|.+.|.|+.|+-
T Consensus 6 ~~~k~~~C~~C~k 18 (41)
T 2ept_A 6 SGQRVYECQECGK 18 (41)
T ss_dssp CCCCCEECSSSCC
T ss_pred CCCCCeECCCCCC
Confidence 4567799998863
No 84
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.12 E-value=30 Score=17.36 Aligned_cols=13 Identities=31% Similarity=0.899 Sum_probs=9.8
Q ss_pred CCCceEeCCCCCe
Q 039987 34 PNRKFWKCKGCGA 46 (105)
Q Consensus 34 PGRkFY~CpsC~F 46 (105)
.|.+.|.|+.|+-
T Consensus 8 ~~~k~~~C~~C~k 20 (44)
T 2epv_A 8 SGEKPYECNECGK 20 (44)
T ss_dssp CCCCSEECSSSCC
T ss_pred CCCcCeECCCCCc
Confidence 4667899998863
No 85
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.48 E-value=24 Score=17.25 Aligned_cols=13 Identities=31% Similarity=0.874 Sum_probs=9.4
Q ss_pred CCCceEeCCCCCe
Q 039987 34 PNRKFWKCKGCGA 46 (105)
Q Consensus 34 PGRkFY~CpsC~F 46 (105)
.|.+.|.|+.|+.
T Consensus 7 ~~~k~~~C~~C~k 19 (42)
T 2ytb_A 7 GGEKPYRCDQCGK 19 (42)
T ss_dssp CSCCSBCCTTTTC
T ss_pred CCCCCeeCCCccc
Confidence 4567799998753
No 86
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.43 E-value=32 Score=17.21 Aligned_cols=13 Identities=23% Similarity=0.667 Sum_probs=9.7
Q ss_pred CCCceEeCCCCCe
Q 039987 34 PNRKFWKCKGCGA 46 (105)
Q Consensus 34 PGRkFY~CpsC~F 46 (105)
.|.+.|.|+.|+.
T Consensus 8 ~~~k~~~C~~C~k 20 (46)
T 2ytf_A 8 TGEKPFECSECQK 20 (46)
T ss_dssp CCCCSEECSSSCC
T ss_pred CCCCCcCCCCCCc
Confidence 4567799998863
No 87
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Probab=24.30 E-value=34 Score=16.63 Aligned_cols=12 Identities=17% Similarity=0.515 Sum_probs=8.4
Q ss_pred CCceEeCCCCCe
Q 039987 35 NRKFWKCKGCGA 46 (105)
Q Consensus 35 GRkFY~CpsC~F 46 (105)
|.+.|.|+.|+.
T Consensus 3 ~~k~~~C~~C~k 14 (39)
T 1njq_A 3 PPRSYTCSFCKR 14 (39)
T ss_dssp CSSSEECTTTCC
T ss_pred CCCceECCCCCc
Confidence 346689998863
No 88
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.16 E-value=35 Score=17.05 Aligned_cols=13 Identities=38% Similarity=0.943 Sum_probs=9.7
Q ss_pred CCCceEeCCCCCe
Q 039987 34 PNRKFWKCKGCGA 46 (105)
Q Consensus 34 PGRkFY~CpsC~F 46 (105)
.|.+.|.|+.|+.
T Consensus 8 ~~~k~~~C~~C~k 20 (46)
T 2eow_A 8 TGEKPYKCNECGK 20 (46)
T ss_dssp CCCCCEECTTSCC
T ss_pred CCCCCeeccccCC
Confidence 4567799998864
No 89
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.73 E-value=34 Score=17.19 Aligned_cols=13 Identities=23% Similarity=0.956 Sum_probs=9.7
Q ss_pred CCCceEeCCCCCe
Q 039987 34 PNRKFWKCKGCGA 46 (105)
Q Consensus 34 PGRkFY~CpsC~F 46 (105)
.|.+.|.|+.|+-
T Consensus 8 ~~~~~~~C~~C~k 20 (46)
T 2emi_A 8 TGERHYECSECGK 20 (46)
T ss_dssp SSCCCEECSSSCC
T ss_pred CCCCCCCCCCCCc
Confidence 4567799998863
No 90
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.59 E-value=35 Score=17.20 Aligned_cols=13 Identities=23% Similarity=0.956 Sum_probs=9.7
Q ss_pred CCCceEeCCCCCe
Q 039987 34 PNRKFWKCKGCGA 46 (105)
Q Consensus 34 PGRkFY~CpsC~F 46 (105)
.|.+.|.|+.|+.
T Consensus 8 ~~~k~~~C~~C~k 20 (46)
T 2ytp_A 8 TGERHYECSECGK 20 (46)
T ss_dssp CCCCCEECSSSCC
T ss_pred CCCCCeECCcCCc
Confidence 4567799998863
No 91
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.51 E-value=33 Score=17.05 Aligned_cols=13 Identities=23% Similarity=0.677 Sum_probs=9.5
Q ss_pred CCCceEeCCCCCe
Q 039987 34 PNRKFWKCKGCGA 46 (105)
Q Consensus 34 PGRkFY~CpsC~F 46 (105)
.|.+.|.|+.|+.
T Consensus 8 ~~~k~~~C~~C~k 20 (44)
T 2yu5_A 8 AGENPFKCSKCDR 20 (44)
T ss_dssp SCCCSEECSSSSC
T ss_pred CCCCCeECCCCCc
Confidence 4556799998863
No 92
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=29.24 E-value=17 Score=16.00 Aligned_cols=8 Identities=38% Similarity=1.182 Sum_probs=5.2
Q ss_pred eEeCCCCC
Q 039987 38 FWKCKGCG 45 (105)
Q Consensus 38 FY~CpsC~ 45 (105)
.|.|+.|+
T Consensus 2 p~~C~~C~ 9 (26)
T 2lvu_A 2 PYVCERCG 9 (26)
Confidence 46777665
No 93
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.46 E-value=27 Score=17.08 Aligned_cols=13 Identities=23% Similarity=0.654 Sum_probs=9.3
Q ss_pred CCCceEeCCCCCe
Q 039987 34 PNRKFWKCKGCGA 46 (105)
Q Consensus 34 PGRkFY~CpsC~F 46 (105)
.|.+.|.|+.|+.
T Consensus 6 ~~~k~~~C~~C~k 18 (42)
T 2yte_A 6 SGEKPYSCAECKE 18 (42)
T ss_dssp CSCCSCBCTTTCC
T ss_pred CCCCCeECCCCCC
Confidence 3556799998863
No 94
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=23.43 E-value=33 Score=19.08 Aligned_cols=18 Identities=33% Similarity=0.680 Sum_probs=11.3
Q ss_pred cCCCCCCCceEeCCCCCe
Q 039987 29 HTRENPNRKFWKCKGCGA 46 (105)
Q Consensus 29 kT~~NPGRkFY~CpsC~F 46 (105)
......|.+.|.|+.|+-
T Consensus 8 ~~~~~~~~~~~~C~~C~k 25 (74)
T 2lce_A 8 HSHMTHSDKPYKCDRCQA 25 (74)
T ss_dssp ---CCCCCCSBCCTTSSC
T ss_pred cccccCCCCCeECCCCCc
Confidence 345666778889988763
No 95
>3bqp_A Proactivator polypeptide; saposin, sphingolipid activator protein, lipid binding protein, acid ceramidase,farber disease, lipid metabolism; 1.30A {Homo sapiens} PDB: 3bqq_C 2rb3_A 2r1q_A 2r0r_A
Probab=23.42 E-value=37 Score=19.93 Aligned_cols=37 Identities=16% Similarity=0.299 Sum_probs=27.7
Q ss_pred hhhhhhhhccccchhhhHhHhhhhc-Cc--eeeeeehhhH
Q 039987 60 DFRGMVDRNMSENKIDILLGEVCKL-GH--QMECYSLKFQ 96 (105)
Q Consensus 60 ~~~~~~~~n~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~ 96 (105)
.+..+++.|.++..|--.+.++|+. ++ +.+|.++--+
T Consensus 14 ~i~~~l~~~~t~~~I~~~l~~~C~~lp~~~~~~C~~~v~~ 53 (80)
T 3bqp_A 14 YLDRNLEKNSTKQEILAALEKGCSFLPDPYQKQCDQFVAE 53 (80)
T ss_dssp HHHHHSCTTCCHHHHHHHHHHHGGGSCGGGHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHhCCCccchhhHHHHHH
Confidence 4667888999999999999999975 33 4567665433
No 96
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=23.35 E-value=46 Score=25.57 Aligned_cols=33 Identities=18% Similarity=0.223 Sum_probs=22.5
Q ss_pred cccccccCCceeEEEeecCCCCCCCceEeCCCCCeeEe
Q 039987 12 LKACEKCFNSSKVLRTSHTRENPNRKFWKCKGCGAFKW 49 (105)
Q Consensus 12 l~~Cp~Cg~~~avlrTSkT~~NPGRkFY~CpsC~FFqW 49 (105)
...||.|+..+.. -..++.+-.+.|..||.-.-
T Consensus 21 ~~~Cp~Cg~~~~~-----iv~D~~~G~~vC~~CG~Vl~ 53 (345)
T 3k7a_M 21 VLTCPECKVYPPK-----IVERFSEGDVVCALCGLVLS 53 (345)
T ss_dssp CCCCSTTCCSCCC-----CCCCSSSCSCCCSSSCCCCC
T ss_pred CCcCcCCCCCCCc-----eEEECCCCCEecCCCCeEcc
Confidence 5589999754211 22356677899999998653
No 97
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=23.27 E-value=52 Score=24.57 Aligned_cols=31 Identities=16% Similarity=0.235 Sum_probs=20.3
Q ss_pred cccccccCCceeEEEeecCCCCCCCceEeCCCCCeeEec
Q 039987 12 LKACEKCFNSSKVLRTSHTRENPNRKFWKCKGCGAFKWD 50 (105)
Q Consensus 12 l~~Cp~Cg~~~avlrTSkT~~NPGRkFY~CpsC~FFqW~ 50 (105)
..-||.||.. ... ..++.-..|++|++..|-
T Consensus 107 ~~fC~~CG~~-~~~-------~~~~~~~~C~~C~~~~yp 137 (269)
T 1vk6_A 107 HKYCGYCGHE-MYP-------SKTEWAMLCSHCRERYYP 137 (269)
T ss_dssp TSBCTTTCCB-EEE-------CSSSSCEEESSSSCEECC
T ss_pred CCccccCCCc-Ccc-------CCCceeeeCCCCCCEecC
Confidence 4679999643 222 134455679999998873
No 98
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.87 E-value=37 Score=16.94 Aligned_cols=13 Identities=31% Similarity=0.882 Sum_probs=9.7
Q ss_pred CCCceEeCCCCCe
Q 039987 34 PNRKFWKCKGCGA 46 (105)
Q Consensus 34 PGRkFY~CpsC~F 46 (105)
.|.+.|.|+.|+.
T Consensus 8 ~~~~~~~C~~C~k 20 (46)
T 2yrj_A 8 TGEKPYRCGECGK 20 (46)
T ss_dssp CCCCCEECSSSCC
T ss_pred CCCCCeECCCCCC
Confidence 4567799998864
No 99
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.86 E-value=38 Score=16.99 Aligned_cols=13 Identities=38% Similarity=0.938 Sum_probs=9.9
Q ss_pred CCCceEeCCCCCe
Q 039987 34 PNRKFWKCKGCGA 46 (105)
Q Consensus 34 PGRkFY~CpsC~F 46 (105)
.|.+.|.|+.|+.
T Consensus 8 ~~~k~~~C~~C~k 20 (46)
T 2eq0_A 8 TGEKPYKCHECGK 20 (46)
T ss_dssp TCCCCEECTTTCC
T ss_pred CCCCCeECCCCCc
Confidence 4567799998864
No 100
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.79 E-value=37 Score=16.97 Aligned_cols=13 Identities=31% Similarity=0.892 Sum_probs=9.6
Q ss_pred CCCceEeCCCCCe
Q 039987 34 PNRKFWKCKGCGA 46 (105)
Q Consensus 34 PGRkFY~CpsC~F 46 (105)
.|.+.|.|+.|+.
T Consensus 8 ~~~~~~~C~~C~k 20 (46)
T 2eor_A 8 TGEKPYNCEECGK 20 (46)
T ss_dssp SCCCSEECTTTCC
T ss_pred CCCcCccCCCCCC
Confidence 4567799998863
No 101
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=22.72 E-value=25 Score=15.78 Aligned_cols=9 Identities=33% Similarity=0.829 Sum_probs=6.0
Q ss_pred eEeCCCCCe
Q 039987 38 FWKCKGCGA 46 (105)
Q Consensus 38 FY~CpsC~F 46 (105)
.|.|+.|+-
T Consensus 3 ~~~C~~C~k 11 (27)
T 2kvg_A 3 PYRCPLCRA 11 (27)
T ss_dssp TEEETTTTE
T ss_pred CcCCCCCCc
Confidence 477877763
No 102
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.65 E-value=53 Score=16.38 Aligned_cols=13 Identities=31% Similarity=0.687 Sum_probs=9.6
Q ss_pred CCCCceEeCCCCC
Q 039987 33 NPNRKFWKCKGCG 45 (105)
Q Consensus 33 NPGRkFY~CpsC~ 45 (105)
..|.+.|.|+.|+
T Consensus 7 h~~~~~~~C~~C~ 19 (46)
T 2ep0_A 7 GTGEKPYKCDVCH 19 (46)
T ss_dssp STTCCSEECSSSC
T ss_pred CCCCCCeeCcccC
Confidence 3466779999886
No 103
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=22.65 E-value=27 Score=15.30 Aligned_cols=8 Identities=25% Similarity=0.787 Sum_probs=4.8
Q ss_pred eEeCCCCC
Q 039987 38 FWKCKGCG 45 (105)
Q Consensus 38 FY~CpsC~ 45 (105)
.|.|+.|+
T Consensus 2 ~~~C~~C~ 9 (29)
T 1ard_A 2 SFVCEVCT 9 (29)
T ss_dssp CCBCTTTC
T ss_pred CeECCCCC
Confidence 46676664
No 104
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.62 E-value=38 Score=17.05 Aligned_cols=13 Identities=31% Similarity=0.813 Sum_probs=9.6
Q ss_pred CCCceEeCCCCCe
Q 039987 34 PNRKFWKCKGCGA 46 (105)
Q Consensus 34 PGRkFY~CpsC~F 46 (105)
.|.+.|.|+.|+-
T Consensus 8 ~~~k~~~C~~C~k 20 (46)
T 2eoy_A 8 QKEKCFKCNKCEK 20 (46)
T ss_dssp CCSCCEECSSSCC
T ss_pred CCCCCEECcCCCC
Confidence 3567799998863
No 105
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=22.60 E-value=25 Score=15.64 Aligned_cols=8 Identities=25% Similarity=0.804 Sum_probs=5.2
Q ss_pred eEeCCCCC
Q 039987 38 FWKCKGCG 45 (105)
Q Consensus 38 FY~CpsC~ 45 (105)
.|.|+.|+
T Consensus 2 ~~~C~~C~ 9 (30)
T 1paa_A 2 AYACGLCN 9 (30)
T ss_dssp CSBCTTTC
T ss_pred CcCCcccC
Confidence 46777665
No 106
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}
Probab=22.48 E-value=37 Score=17.78 Aligned_cols=12 Identities=33% Similarity=0.786 Sum_probs=9.1
Q ss_pred CCceEeCCCCCe
Q 039987 35 NRKFWKCKGCGA 46 (105)
Q Consensus 35 GRkFY~CpsC~F 46 (105)
|-+.|.|..|+.
T Consensus 4 ~~kp~~C~~C~k 15 (48)
T 3iuf_A 4 RDKPYACDICGK 15 (48)
T ss_dssp TTSCEECTTTCC
T ss_pred CCcCEECCCcCc
Confidence 567799998863
No 107
>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*
Probab=22.44 E-value=37 Score=17.94 Aligned_cols=13 Identities=23% Similarity=0.299 Sum_probs=9.6
Q ss_pred CCCceEeCCCCCe
Q 039987 34 PNRKFWKCKGCGA 46 (105)
Q Consensus 34 PGRkFY~CpsC~F 46 (105)
.|.+.|.|+.|+.
T Consensus 20 ~~~k~~~C~~C~k 32 (54)
T 1yui_A 20 QSEQPATCPICYA 32 (54)
T ss_dssp TSSCCEECTTTCC
T ss_pred CCCCCccCCCCCc
Confidence 3556799998863
No 108
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=22.41 E-value=33 Score=15.05 Aligned_cols=8 Identities=38% Similarity=1.115 Sum_probs=5.6
Q ss_pred eEeCCCCC
Q 039987 38 FWKCKGCG 45 (105)
Q Consensus 38 FY~CpsC~ 45 (105)
.|.|+.|+
T Consensus 3 ~~~C~~C~ 10 (28)
T 2kvf_A 3 PYSCSVCG 10 (28)
T ss_dssp SEECSSSC
T ss_pred CccCCCCC
Confidence 47787765
No 109
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.13 E-value=38 Score=16.96 Aligned_cols=13 Identities=23% Similarity=0.825 Sum_probs=9.6
Q ss_pred CCCceEeCCCCCe
Q 039987 34 PNRKFWKCKGCGA 46 (105)
Q Consensus 34 PGRkFY~CpsC~F 46 (105)
.|.+.|.|+.|+-
T Consensus 8 ~~~k~~~C~~C~k 20 (46)
T 2emy_A 8 TGENPYECHECGK 20 (46)
T ss_dssp CSSCCEECSSSCC
T ss_pred CCCcCcCCCCCCc
Confidence 4567799998863
No 110
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=22.13 E-value=78 Score=22.50 Aligned_cols=13 Identities=31% Similarity=0.575 Sum_probs=9.1
Q ss_pred ceEeCCCCCeeEe
Q 039987 37 KFWKCKGCGAFKW 49 (105)
Q Consensus 37 kFY~CpsC~FFqW 49 (105)
.+|.|+.||+-.-
T Consensus 137 ~~~~C~~CG~i~~ 149 (170)
T 3pwf_A 137 KVYICPICGYTAV 149 (170)
T ss_dssp CEEECTTTCCEEE
T ss_pred CeeEeCCCCCeeC
Confidence 5677777777665
No 111
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.09 E-value=37 Score=16.97 Aligned_cols=13 Identities=31% Similarity=0.807 Sum_probs=9.6
Q ss_pred CCCceEeCCCCCe
Q 039987 34 PNRKFWKCKGCGA 46 (105)
Q Consensus 34 PGRkFY~CpsC~F 46 (105)
.|.+.|.|+.|+.
T Consensus 8 ~~~k~~~C~~C~k 20 (46)
T 2yts_A 8 TGEKPYICNECGK 20 (46)
T ss_dssp CSCCSEECSSSCC
T ss_pred CCCcCEECCCCCh
Confidence 4567799998863
No 112
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=22.09 E-value=43 Score=23.77 Aligned_cols=30 Identities=23% Similarity=0.558 Sum_probs=20.4
Q ss_pred ccccccCCceeEEEeecCCCCCCCceEeCCCCCee
Q 039987 13 KACEKCFNSSKVLRTSHTRENPNRKFWKCKGCGAF 47 (105)
Q Consensus 13 ~~Cp~Cg~~~avlrTSkT~~NPGRkFY~CpsC~FF 47 (105)
+.|+.|++..-.+. -+ .+--|-+|..||..
T Consensus 103 VlC~~C~sPdT~l~-k~----~r~~~l~C~ACGa~ 132 (138)
T 1nee_A 103 VICHECNRPDTRII-RE----GRISLLKCEACGAK 132 (138)
T ss_dssp HHHTCCSSCSSCCE-EE----TTTTEEECSTTSCC
T ss_pred EECCCCCCcCcEEE-Ec----CCeEEEEccCCCCC
Confidence 78999975543333 21 26678899999854
No 113
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=22.06 E-value=20 Score=22.25 Aligned_cols=24 Identities=25% Similarity=0.791 Sum_probs=15.2
Q ss_pred cccccccCCceeEEEeecCCCCCCCceEeCCCCCeeE
Q 039987 12 LKACEKCFNSSKVLRTSHTRENPNRKFWKCKGCGAFK 48 (105)
Q Consensus 12 l~~Cp~Cg~~~avlrTSkT~~NPGRkFY~CpsC~FFq 48 (105)
+..||.|| +. -+.=..||.|||..
T Consensus 30 l~~c~~cG-~~------------~~pH~vc~~CG~Y~ 53 (60)
T 2zjr_Z 30 LTECPQCH-GK------------KLSHHICPNCGYYD 53 (60)
T ss_dssp CEECTTTC-CE------------ECTTBCCTTTCBSS
T ss_pred ceECCCCC-CE------------eCCceEcCCCCcCC
Confidence 88999996 32 12234677888653
No 114
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.91 E-value=26 Score=17.39 Aligned_cols=13 Identities=23% Similarity=0.738 Sum_probs=9.5
Q ss_pred CCCceEeCCCCCe
Q 039987 34 PNRKFWKCKGCGA 46 (105)
Q Consensus 34 PGRkFY~CpsC~F 46 (105)
.|.+.|.|+.|+-
T Consensus 8 ~~~k~~~C~~C~k 20 (44)
T 2eoj_A 8 TGENPYECCECGK 20 (44)
T ss_dssp SSCCSCEETTTTE
T ss_pred CCCcCeeCCCCCC
Confidence 4567799998863
No 115
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=21.91 E-value=32 Score=24.80 Aligned_cols=31 Identities=26% Similarity=0.534 Sum_probs=20.5
Q ss_pred ccccccCCceeEEEeecCCCCCCCceEeCCCCCeeE
Q 039987 13 KACEKCFNSSKVLRTSHTRENPNRKFWKCKGCGAFK 48 (105)
Q Consensus 13 ~~Cp~Cg~~~avlrTSkT~~NPGRkFY~CpsC~FFq 48 (105)
+.|+.|++.. ..++- .| +--|-+|.+||...
T Consensus 105 VlC~~C~sPd-T~L~k---~~-r~~~l~C~ACGa~~ 135 (148)
T 2d74_B 105 VICPVCGSPD-TKIIK---RD-RFHFLKCEACGAET 135 (148)
T ss_dssp SSCSSSCCTT-CCCCB---SS-SSBCCCCSSSCCCC
T ss_pred EECCCCCCcC-cEEEE---eC-CEEEEEecCCCCCc
Confidence 7899997544 33332 22 56778899998653
No 116
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.73 E-value=50 Score=16.49 Aligned_cols=14 Identities=36% Similarity=0.888 Sum_probs=10.1
Q ss_pred CCCCceEeCCCCCe
Q 039987 33 NPNRKFWKCKGCGA 46 (105)
Q Consensus 33 NPGRkFY~CpsC~F 46 (105)
..|.+.|.|+.|+-
T Consensus 7 h~~~k~~~C~~C~k 20 (46)
T 2ysp_A 7 GTGEKPYKCEKCGK 20 (46)
T ss_dssp CSSCCSEEETTTTE
T ss_pred CCCCCCeECCCCCC
Confidence 34667799998864
No 117
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.66 E-value=41 Score=16.84 Aligned_cols=13 Identities=31% Similarity=0.864 Sum_probs=9.6
Q ss_pred CCCceEeCCCCCe
Q 039987 34 PNRKFWKCKGCGA 46 (105)
Q Consensus 34 PGRkFY~CpsC~F 46 (105)
.|.+.|.|+.|+-
T Consensus 8 ~~~~~~~C~~C~k 20 (46)
T 2yso_A 8 SREKSHQCRECGE 20 (46)
T ss_dssp SCCCCEECTTTCC
T ss_pred CCCCCEEccccCh
Confidence 4567799998863
No 118
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.53 E-value=40 Score=16.90 Aligned_cols=13 Identities=38% Similarity=0.943 Sum_probs=9.8
Q ss_pred CCCceEeCCCCCe
Q 039987 34 PNRKFWKCKGCGA 46 (105)
Q Consensus 34 PGRkFY~CpsC~F 46 (105)
.|.+.|.|+.|+.
T Consensus 8 ~~~k~~~C~~C~k 20 (46)
T 2ene_A 8 TGEKPYKCNECGK 20 (46)
T ss_dssp CCSSSEECSSSCC
T ss_pred CCCCCeECCCCCc
Confidence 4567799998864
No 119
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.50 E-value=39 Score=16.92 Aligned_cols=13 Identities=31% Similarity=0.899 Sum_probs=9.6
Q ss_pred CCCceEeCCCCCe
Q 039987 34 PNRKFWKCKGCGA 46 (105)
Q Consensus 34 PGRkFY~CpsC~F 46 (105)
.|.+.|.|+.|+.
T Consensus 8 ~~~k~~~C~~C~k 20 (46)
T 2ep3_A 8 TGEKPYRCAECGK 20 (46)
T ss_dssp SCCCSEECSSSCC
T ss_pred CCCCCeECCCCCc
Confidence 4567799998864
No 120
>2gtg_A Proactivator polypeptide; saposin, sphingolipid activator protein, lipid-binding prote binding protein; 2.40A {Homo sapiens} SCOP: a.64.1.1 PDB: 1m12_A 1sn6_A
Probab=21.37 E-value=43 Score=20.12 Aligned_cols=35 Identities=20% Similarity=0.353 Sum_probs=27.4
Q ss_pred hhhhhhhhccccchhhhHhHhhhhcC---ceeeeeehh
Q 039987 60 DFRGMVDRNMSENKIDILLGEVCKLG---HQMECYSLK 94 (105)
Q Consensus 60 ~~~~~~~~n~~~~~~~~~~~~~~~~~---~~~~~~~~~ 94 (105)
.+..+++.|.++..|--.|..+|+.- .+.+|..+-
T Consensus 16 ~i~~~l~~~~t~~~I~~~l~~~C~~lp~~~~~~C~~~V 53 (83)
T 2gtg_A 16 EVTKLIDNNKTEKEILDAFDKMCSKLPKSLSEECQEVV 53 (83)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHCCCcchhHHHHHH
Confidence 45678889999999999999999764 356776653
No 121
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.35 E-value=40 Score=16.96 Aligned_cols=13 Identities=38% Similarity=0.948 Sum_probs=9.6
Q ss_pred CCCceEeCCCCCe
Q 039987 34 PNRKFWKCKGCGA 46 (105)
Q Consensus 34 PGRkFY~CpsC~F 46 (105)
.|.+.|.|+.|+.
T Consensus 8 ~~~k~~~C~~C~k 20 (46)
T 2yto_A 8 TGEKPYKCSDCGK 20 (46)
T ss_dssp CSCCCEECSSSCC
T ss_pred CCCCCEECcccCC
Confidence 4567799998863
No 122
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.33 E-value=62 Score=16.19 Aligned_cols=14 Identities=36% Similarity=0.833 Sum_probs=10.1
Q ss_pred CCCCceEeCCCCCe
Q 039987 33 NPNRKFWKCKGCGA 46 (105)
Q Consensus 33 NPGRkFY~CpsC~F 46 (105)
..|.+.|.|+.|+-
T Consensus 7 h~~~k~~~C~~C~k 20 (46)
T 2em8_A 7 GSGEKPYKCVECGK 20 (46)
T ss_dssp CCSCCSEECSSSCC
T ss_pred CCCCCCeECcccCc
Confidence 34667799998863
No 123
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.20 E-value=40 Score=16.73 Aligned_cols=13 Identities=23% Similarity=0.590 Sum_probs=9.4
Q ss_pred CCCceEeCCCCCe
Q 039987 34 PNRKFWKCKGCGA 46 (105)
Q Consensus 34 PGRkFY~CpsC~F 46 (105)
.|.+.|.|+.|+-
T Consensus 6 ~~~k~~~C~~C~k 18 (44)
T 2emx_A 6 SGEKPFGCSCCEK 18 (44)
T ss_dssp SSCCCEECSSSSC
T ss_pred CCCcCccCCCCCc
Confidence 4567799998853
No 124
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.16 E-value=41 Score=16.84 Aligned_cols=13 Identities=23% Similarity=0.713 Sum_probs=9.6
Q ss_pred CCCceEeCCCCCe
Q 039987 34 PNRKFWKCKGCGA 46 (105)
Q Consensus 34 PGRkFY~CpsC~F 46 (105)
.|.+.|.|+.|+.
T Consensus 8 ~~~k~~~C~~C~k 20 (46)
T 2emh_A 8 TGERPYICTVCGK 20 (46)
T ss_dssp SCCCSEECTTTCC
T ss_pred CCCCCcCCCCCCc
Confidence 4567799998863
No 125
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=21.16 E-value=50 Score=24.67 Aligned_cols=17 Identities=12% Similarity=0.493 Sum_probs=13.0
Q ss_pred ceEeCCCCCeeEecCCC
Q 039987 37 KFWKCKGCGAFKWDDDR 53 (105)
Q Consensus 37 kFY~CpsC~FFqW~De~ 53 (105)
..+.|++|++.+-.+..
T Consensus 52 ~~~~C~~Cg~v~~~~~~ 68 (416)
T 4e2x_A 52 AVGRCDSCEMVQLTEEV 68 (416)
T ss_dssp EEEEETTTCCEEESSCC
T ss_pred eEEECCCCCceeecCcC
Confidence 45789999999876654
No 126
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A
Probab=21.14 E-value=39 Score=17.00 Aligned_cols=13 Identities=31% Similarity=0.848 Sum_probs=9.6
Q ss_pred CCCceEeCCCCCe
Q 039987 34 PNRKFWKCKGCGA 46 (105)
Q Consensus 34 PGRkFY~CpsC~F 46 (105)
.|.+.|.|+.|+.
T Consensus 8 ~~~k~~~C~~C~k 20 (46)
T 2emj_A 8 TGEKPFECAECGK 20 (46)
T ss_dssp CCCCSEECSSSSC
T ss_pred CCCCCEECCCCCc
Confidence 4567799998863
No 127
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.14 E-value=39 Score=16.92 Aligned_cols=13 Identities=31% Similarity=0.777 Sum_probs=9.6
Q ss_pred CCCceEeCCCCCe
Q 039987 34 PNRKFWKCKGCGA 46 (105)
Q Consensus 34 PGRkFY~CpsC~F 46 (105)
.|.+.|.|+.|+.
T Consensus 8 ~~~k~~~C~~C~k 20 (46)
T 2ytj_A 8 TGEKPYICAECGK 20 (46)
T ss_dssp SSCCSEECSSSCC
T ss_pred CCCcCeECCCCCh
Confidence 4567799998863
No 128
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=21.08 E-value=32 Score=17.26 Aligned_cols=33 Identities=15% Similarity=0.097 Sum_probs=16.8
Q ss_pred cccccccCCceeEEEe---ecCCCCCCCceEeCCCCC
Q 039987 12 LKACEKCFNSSKVLRT---SHTRENPNRKFWKCKGCG 45 (105)
Q Consensus 12 l~~Cp~Cg~~~avlrT---SkT~~NPGRkFY~CpsC~ 45 (105)
.-.|+.|+ ..-.... .......|.+.|.|+.|+
T Consensus 10 ~~~C~~C~-k~f~~~~~l~~H~~~H~~~~~~~C~~cg 45 (45)
T 2epq_A 10 PYSCPVCG-LRFKRKDRMSYHVRSHDGSVGKSGPSSG 45 (45)
T ss_dssp SSEETTTT-EECSCHHHHHHHHHHHSCCCCCCCCCCC
T ss_pred CCcCCCCC-cccCCHHHHHHHHHHccCCCCCCCcCCC
Confidence 46788885 2211111 111223456678888775
No 129
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=21.03 E-value=79 Score=21.98 Aligned_cols=37 Identities=24% Similarity=0.445 Sum_probs=25.6
Q ss_pred cccccccCCceeEEEeecCCCCCCCceEeCCCCCeeEecCCCCCC
Q 039987 12 LKACEKCFNSSKVLRTSHTRENPNRKFWKCKGCGAFKWDDDRKSS 56 (105)
Q Consensus 12 l~~Cp~Cg~~~avlrTSkT~~NPGRkFY~CpsC~FFqW~De~~~~ 56 (105)
.-.||.|+ ...+.|.+ =--|.|.+|++-.=-....|.
T Consensus 36 ky~CpfCg-k~~vKR~a-------~GIW~C~kCg~~~AGGAy~~~ 72 (103)
T 4a17_Y 36 KYGCPFCG-KVAVKRAA-------VGIWKCKPCKKIIAGGAWELT 72 (103)
T ss_dssp CEECTTTC-CEEEEEEE-------TTEEEETTTTEEEECCSSCSS
T ss_pred CCCCCCCC-CceeeecC-------cceEEcCCCCCEEeCCcccCC
Confidence 34799995 66777766 247999999975444444454
No 130
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.02 E-value=41 Score=16.85 Aligned_cols=13 Identities=38% Similarity=0.953 Sum_probs=9.7
Q ss_pred CCCceEeCCCCCe
Q 039987 34 PNRKFWKCKGCGA 46 (105)
Q Consensus 34 PGRkFY~CpsC~F 46 (105)
.|.+.|.|+.|+-
T Consensus 8 ~~~k~~~C~~C~k 20 (46)
T 2em7_A 8 TGEKPYKCEECGK 20 (46)
T ss_dssp SCCCSEECSSSCC
T ss_pred CCCcCccCCCccc
Confidence 4567799998863
No 131
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.97 E-value=43 Score=16.86 Aligned_cols=12 Identities=25% Similarity=0.908 Sum_probs=9.2
Q ss_pred CCCceEeCCCCC
Q 039987 34 PNRKFWKCKGCG 45 (105)
Q Consensus 34 PGRkFY~CpsC~ 45 (105)
.|.+.|.|+.|+
T Consensus 8 ~~~k~~~C~~C~ 19 (46)
T 2eoo_A 8 SGERPYGCNECG 19 (46)
T ss_dssp SCCCCEECSSSC
T ss_pred CCCCCEEccccC
Confidence 456779999886
No 132
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.93 E-value=41 Score=16.84 Aligned_cols=13 Identities=38% Similarity=0.943 Sum_probs=9.8
Q ss_pred CCCceEeCCCCCe
Q 039987 34 PNRKFWKCKGCGA 46 (105)
Q Consensus 34 PGRkFY~CpsC~F 46 (105)
.|.+.|.|+.|+.
T Consensus 8 ~~~k~~~C~~C~k 20 (46)
T 2yu8_A 8 TGEKPYKCNECGK 20 (46)
T ss_dssp CCCSSEECSSSCC
T ss_pred CCCCCeECCcCCc
Confidence 4567799998864
No 133
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.85 E-value=41 Score=16.83 Aligned_cols=13 Identities=31% Similarity=0.779 Sum_probs=9.7
Q ss_pred CCCceEeCCCCCe
Q 039987 34 PNRKFWKCKGCGA 46 (105)
Q Consensus 34 PGRkFY~CpsC~F 46 (105)
.|.+.|.|+.|+.
T Consensus 8 ~~~k~~~C~~C~k 20 (46)
T 2ep2_A 8 TGEKPYECSICGK 20 (46)
T ss_dssp SCCCSEECSSSCC
T ss_pred CCCcCcCCCCCCc
Confidence 4567799998864
No 134
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Probab=20.84 E-value=40 Score=16.80 Aligned_cols=13 Identities=23% Similarity=0.593 Sum_probs=9.7
Q ss_pred CCCceEeCCCCCe
Q 039987 34 PNRKFWKCKGCGA 46 (105)
Q Consensus 34 PGRkFY~CpsC~F 46 (105)
.|.+.|.|+.|+.
T Consensus 8 ~~~k~~~C~~C~k 20 (46)
T 2el4_A 8 TGVKPYGCSQCAK 20 (46)
T ss_dssp CCCCSEECSSSSC
T ss_pred CCCCceECCCCCc
Confidence 4567799998863
No 135
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.84 E-value=48 Score=16.71 Aligned_cols=13 Identities=23% Similarity=0.751 Sum_probs=9.7
Q ss_pred CCCCceEeCCCCC
Q 039987 33 NPNRKFWKCKGCG 45 (105)
Q Consensus 33 NPGRkFY~CpsC~ 45 (105)
..|.+.|.|+.|+
T Consensus 7 h~~~k~~~C~~C~ 19 (46)
T 2eom_A 7 GHGERGHRCSDCG 19 (46)
T ss_dssp CCCCSSCCCSSSC
T ss_pred CCCCCCcCCCCCC
Confidence 4566779999875
No 136
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.73 E-value=43 Score=16.70 Aligned_cols=13 Identities=31% Similarity=0.764 Sum_probs=9.5
Q ss_pred CCCceEeCCCCCe
Q 039987 34 PNRKFWKCKGCGA 46 (105)
Q Consensus 34 PGRkFY~CpsC~F 46 (105)
.|.+.|.|+.|+.
T Consensus 8 ~~~~~~~C~~C~k 20 (46)
T 2en8_A 8 SGEKSHTCDECGK 20 (46)
T ss_dssp CCCSSEECTTTCC
T ss_pred CCCCCeECCCcCc
Confidence 4567799998863
No 137
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.70 E-value=42 Score=16.73 Aligned_cols=13 Identities=31% Similarity=0.736 Sum_probs=9.6
Q ss_pred CCCceEeCCCCCe
Q 039987 34 PNRKFWKCKGCGA 46 (105)
Q Consensus 34 PGRkFY~CpsC~F 46 (105)
.|.+.|.|+.|+.
T Consensus 8 ~~~k~~~C~~C~k 20 (46)
T 2eme_A 8 SGEKPYVCDYCGK 20 (46)
T ss_dssp CCCCSEECSSSCC
T ss_pred CCCCCeECCCCCh
Confidence 4567799998863
No 138
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.63 E-value=42 Score=16.72 Aligned_cols=12 Identities=42% Similarity=0.872 Sum_probs=9.1
Q ss_pred CCCceEeCCCCC
Q 039987 34 PNRKFWKCKGCG 45 (105)
Q Consensus 34 PGRkFY~CpsC~ 45 (105)
.|.+.|.|+.|+
T Consensus 8 ~~~k~~~C~~C~ 19 (46)
T 2epw_A 8 TGEKPCKCTECG 19 (46)
T ss_dssp CCCCSEECSSSC
T ss_pred CCCCCeeCCCCC
Confidence 355679999886
No 139
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.54 E-value=42 Score=16.82 Aligned_cols=13 Identities=38% Similarity=0.951 Sum_probs=9.7
Q ss_pred CCCceEeCCCCCe
Q 039987 34 PNRKFWKCKGCGA 46 (105)
Q Consensus 34 PGRkFY~CpsC~F 46 (105)
.|.+.|.|+.|+.
T Consensus 8 ~~~~~~~C~~C~k 20 (46)
T 2ytk_A 8 SGEKPYKCNECGK 20 (46)
T ss_dssp SSSCSEECSSSCC
T ss_pred CCCCCEeCCcCCC
Confidence 4567799998864
No 140
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.53 E-value=49 Score=16.61 Aligned_cols=13 Identities=31% Similarity=0.825 Sum_probs=9.3
Q ss_pred CCCceEeCCCCCe
Q 039987 34 PNRKFWKCKGCGA 46 (105)
Q Consensus 34 PGRkFY~CpsC~F 46 (105)
.|.+.|.|+.|+.
T Consensus 8 ~~~k~~~C~~C~k 20 (46)
T 2eoh_A 8 SGKKPYECKECRK 20 (46)
T ss_dssp CCSCSCCCSSSCC
T ss_pred CCCCCcCCCCcCc
Confidence 4567789987753
No 141
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.53 E-value=41 Score=16.84 Aligned_cols=13 Identities=31% Similarity=0.810 Sum_probs=9.6
Q ss_pred CCCceEeCCCCCe
Q 039987 34 PNRKFWKCKGCGA 46 (105)
Q Consensus 34 PGRkFY~CpsC~F 46 (105)
.|.+.|.|+.|+.
T Consensus 8 ~~~k~~~C~~C~k 20 (46)
T 2eml_A 8 TGEKPYECSVCGK 20 (46)
T ss_dssp SSCCSEECSSSCC
T ss_pred CCCCCeeCCCcCC
Confidence 4567799998864
No 142
>2kwq_A Protein MCM10 homolog; DNA replication, DNA binding, zinc motif, zinc ribbon binding protein; NMR {Xenopus laevis}
Probab=20.51 E-value=34 Score=23.15 Aligned_cols=16 Identities=38% Similarity=0.976 Sum_probs=10.1
Q ss_pred CCCCCeeEecCCCCCC
Q 039987 41 CKGCGAFKWDDDRKSS 56 (105)
Q Consensus 41 CpsC~FFqW~De~~~~ 56 (105)
|++|+-+.|+-.....
T Consensus 68 C~~Cg~~~wer~~M~~ 83 (92)
T 2kwq_A 68 CSTCGLFKWERVGMLK 83 (92)
T ss_dssp CTTTCSCCCEEECCCS
T ss_pred CCCCCCCceEEeeccc
Confidence 5578888887554433
No 143
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.44 E-value=46 Score=16.70 Aligned_cols=13 Identities=46% Similarity=0.999 Sum_probs=9.7
Q ss_pred CCCceEeCCCCCe
Q 039987 34 PNRKFWKCKGCGA 46 (105)
Q Consensus 34 PGRkFY~CpsC~F 46 (105)
.|.+.|.|+.|+.
T Consensus 8 ~~~k~~~C~~C~k 20 (46)
T 2em2_A 8 SGEKPFKCKECGK 20 (46)
T ss_dssp CCCCSEECSSSCC
T ss_pred CCCCCEECCcCCc
Confidence 4667799998863
No 144
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Probab=20.44 E-value=43 Score=16.69 Aligned_cols=13 Identities=38% Similarity=0.943 Sum_probs=9.6
Q ss_pred CCCceEeCCCCCe
Q 039987 34 PNRKFWKCKGCGA 46 (105)
Q Consensus 34 PGRkFY~CpsC~F 46 (105)
.|.+.|.|+.|+.
T Consensus 8 ~~~k~~~C~~C~k 20 (46)
T 2em9_A 8 TGEKPYNCKECGK 20 (46)
T ss_dssp CCCCSEECSSSCC
T ss_pred CCCcCeECCcccc
Confidence 4567799998863
No 145
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=20.29 E-value=38 Score=18.18 Aligned_cols=12 Identities=25% Similarity=0.797 Sum_probs=9.0
Q ss_pred CCceEeCCCCCe
Q 039987 35 NRKFWKCKGCGA 46 (105)
Q Consensus 35 GRkFY~CpsC~F 46 (105)
|.+.|.|+.|+.
T Consensus 7 ~~k~~~C~~C~k 18 (66)
T 2drp_A 7 GEHTYRCKVCSR 18 (66)
T ss_dssp ETTEEECTTTCC
T ss_pred CCcceECCCCcc
Confidence 557899998863
No 146
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.26 E-value=80 Score=21.01 Aligned_cols=28 Identities=36% Similarity=0.802 Sum_probs=20.8
Q ss_pred cccccccCCceeEEEeecCCCCCCCceEeCCCCCee
Q 039987 12 LKACEKCFNSSKVLRTSHTRENPNRKFWKCKGCGAF 47 (105)
Q Consensus 12 l~~Cp~Cg~~~avlrTSkT~~NPGRkFY~CpsC~FF 47 (105)
.-.||.|+ ...+.+.+ ---|.|.+|+.-
T Consensus 35 ky~CpfCG-k~~vkR~a-------~GIW~C~kCg~~ 62 (83)
T 3j21_i 35 KHTCPVCG-RKAVKRIS-------TGIWQCQKCGAT 62 (83)
T ss_dssp CBCCSSSC-SSCEEEEE-------TTEEEETTTCCE
T ss_pred ccCCCCCC-CceeEecC-------cCeEEcCCCCCE
Confidence 45799996 55777765 247999999875
No 147
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Probab=20.23 E-value=45 Score=16.68 Aligned_cols=13 Identities=38% Similarity=0.958 Sum_probs=9.7
Q ss_pred CCCceEeCCCCCe
Q 039987 34 PNRKFWKCKGCGA 46 (105)
Q Consensus 34 PGRkFY~CpsC~F 46 (105)
.|.+.|.|+.|+.
T Consensus 8 ~~~k~~~C~~C~k 20 (46)
T 2ema_A 8 TGEKRYKCNECGK 20 (46)
T ss_dssp TTSCCEECSSSCC
T ss_pred CCCcCcCCCCCcc
Confidence 4567799998864
No 148
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.22 E-value=34 Score=17.25 Aligned_cols=13 Identities=31% Similarity=0.905 Sum_probs=9.3
Q ss_pred CCCceEeCCCCCe
Q 039987 34 PNRKFWKCKGCGA 46 (105)
Q Consensus 34 PGRkFY~CpsC~F 46 (105)
.|.+.|.|+.|+.
T Consensus 8 ~~~k~~~C~~C~k 20 (46)
T 2yth_A 8 SGEKPFQCEECGK 20 (46)
T ss_dssp CCSSSBCCSSSCC
T ss_pred CCCcCCCCCCCCc
Confidence 3567799998863
No 149
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.02 E-value=54 Score=16.44 Aligned_cols=14 Identities=36% Similarity=0.861 Sum_probs=9.8
Q ss_pred CCCCceEeCCCCCe
Q 039987 33 NPNRKFWKCKGCGA 46 (105)
Q Consensus 33 NPGRkFY~CpsC~F 46 (105)
..|.+.|.|+.|+-
T Consensus 7 h~~~k~~~C~~C~k 20 (46)
T 2elz_A 7 GSVEKPYKCEDCGK 20 (46)
T ss_dssp CCCCSSCBCSSSCC
T ss_pred CCCCCCeeCcccCc
Confidence 34667789988763
Done!