Query 039990
Match_columns 1217
No_of_seqs 612 out of 4966
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 04:01:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039990.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039990hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 2.1E-71 4.6E-76 668.4 42.1 543 25-596 105-675 (889)
2 PLN03210 Resistant to P. syrin 100.0 3.8E-60 8.2E-65 608.7 53.9 468 32-569 134-640 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 4.9E-38 1.1E-42 347.2 15.5 268 84-356 1-285 (287)
4 PLN00113 leucine-rich repeat r 100.0 1.9E-34 4.2E-39 374.2 27.4 225 932-1184 380-605 (968)
5 PLN00113 leucine-rich repeat r 100.0 1.8E-33 3.8E-38 365.2 27.7 206 910-1142 382-588 (968)
6 KOG0618 Serine/threonine phosp 99.9 6.4E-25 1.4E-29 248.9 -5.7 244 930-1186 239-489 (1081)
7 KOG0472 Leucine-rich repeat pr 99.9 1.3E-26 2.8E-31 237.5 -17.7 177 474-675 60-236 (565)
8 KOG0472 Leucine-rich repeat pr 99.9 1E-25 2.2E-30 231.0 -12.5 462 445-1062 63-540 (565)
9 KOG4194 Membrane glycoprotein 99.9 5.8E-23 1.3E-27 220.5 6.6 355 750-1181 79-447 (873)
10 PLN03210 Resistant to P. syrin 99.9 2.6E-21 5.7E-26 250.0 23.2 264 908-1187 634-907 (1153)
11 KOG4194 Membrane glycoprotein 99.8 7.4E-22 1.6E-26 212.1 6.1 360 483-989 79-448 (873)
12 KOG0444 Cytoskeletal regulator 99.8 6.6E-23 1.4E-27 221.1 -3.6 370 480-1021 5-379 (1255)
13 KOG0618 Serine/threonine phosp 99.8 3E-21 6.5E-26 219.5 -3.8 264 933-1214 220-488 (1081)
14 KOG0444 Cytoskeletal regulator 99.8 1.1E-21 2.5E-26 211.6 -7.9 177 955-1163 196-375 (1255)
15 PRK15387 E3 ubiquitin-protein 99.5 2.3E-13 5E-18 162.2 17.2 197 931-1162 261-457 (788)
16 PRK15387 E3 ubiquitin-protein 99.5 4.6E-13 1E-17 159.7 15.7 173 932-1134 282-454 (788)
17 KOG4237 Extracellular matrix p 99.4 8.8E-15 1.9E-19 151.3 -4.9 116 470-597 79-196 (498)
18 PRK15370 E3 ubiquitin-protein 99.3 3.8E-12 8.2E-17 153.3 12.9 243 910-1185 180-427 (754)
19 PRK15370 E3 ubiquitin-protein 99.3 8.7E-12 1.9E-16 150.2 10.1 251 932-1215 178-428 (754)
20 KOG0617 Ras suppressor protein 99.2 1.9E-13 4.1E-18 124.5 -4.8 161 480-687 31-192 (264)
21 KOG4237 Extracellular matrix p 99.2 1.2E-12 2.6E-17 135.7 -4.3 222 929-1182 271-497 (498)
22 PRK04841 transcriptional regul 99.2 3.5E-09 7.7E-14 137.7 26.6 282 78-403 13-332 (903)
23 KOG4658 Apoptotic ATPase [Sign 99.0 1.7E-10 3.6E-15 141.5 5.4 238 425-685 546-788 (889)
24 KOG0617 Ras suppressor protein 99.0 1.8E-11 3.9E-16 111.8 -2.7 157 979-1168 32-190 (264)
25 PRK00411 cdc6 cell division co 98.9 2E-07 4.4E-12 108.0 26.3 286 77-381 28-357 (394)
26 PRK00080 ruvB Holliday junctio 98.8 4.2E-08 9.2E-13 109.5 15.6 271 78-383 24-311 (328)
27 TIGR00635 ruvB Holliday juncti 98.8 7.7E-08 1.7E-12 106.9 16.6 269 79-382 4-289 (305)
28 TIGR02928 orc1/cdc6 family rep 98.8 9.2E-07 2E-11 101.4 25.8 289 78-382 14-350 (365)
29 COG2909 MalT ATP-dependent tra 98.8 4.4E-07 9.5E-12 105.4 22.0 286 79-405 19-340 (894)
30 KOG4341 F-box protein containi 98.8 1.1E-10 2.3E-15 122.8 -7.2 274 750-1086 139-439 (483)
31 cd00116 LRR_RI Leucine-rich re 98.7 3.2E-10 7E-15 127.9 -6.0 161 1050-1213 137-318 (319)
32 PRK15386 type III secretion pr 98.7 1.1E-07 2.3E-12 104.1 12.1 70 979-1058 51-120 (426)
33 KOG4341 F-box protein containi 98.7 3.5E-10 7.7E-15 119.0 -6.8 278 910-1189 140-442 (483)
34 PF01637 Arch_ATPase: Archaeal 98.7 9.5E-08 2.1E-12 102.3 11.4 186 81-276 1-233 (234)
35 cd00116 LRR_RI Leucine-rich re 98.6 3E-09 6.5E-14 120.0 -1.9 153 1027-1184 137-318 (319)
36 TIGR03015 pepcterm_ATPase puta 98.6 5.5E-06 1.2E-10 90.4 21.8 171 107-281 44-242 (269)
37 PRK15386 type III secretion pr 98.5 5.5E-07 1.2E-11 98.7 9.8 154 908-1083 52-210 (426)
38 KOG3207 Beta-tubulin folding c 98.4 6.3E-08 1.4E-12 103.0 0.7 37 977-1014 118-156 (505)
39 KOG1259 Nischarin, modulator o 98.4 7.7E-08 1.7E-12 96.6 0.9 125 1048-1184 282-410 (490)
40 COG3903 Predicted ATPase [Gene 98.3 2.8E-06 6.1E-11 91.3 11.4 284 105-402 13-313 (414)
41 PTZ00112 origin recognition co 98.3 4.3E-05 9.4E-10 90.0 21.8 293 78-382 754-1086(1164)
42 PF05729 NACHT: NACHT domain 98.3 2.5E-06 5.4E-11 85.5 10.4 132 107-244 1-163 (166)
43 PF14580 LRR_9: Leucine-rich r 98.3 9.2E-08 2E-12 93.4 -0.4 62 480-554 40-102 (175)
44 KOG3207 Beta-tubulin folding c 98.3 9.7E-08 2.1E-12 101.6 -0.4 178 979-1160 145-336 (505)
45 PF14580 LRR_9: Leucine-rich r 98.3 4.5E-07 9.8E-12 88.6 3.6 132 479-628 16-149 (175)
46 PF13855 LRR_8: Leucine rich r 98.3 7.8E-07 1.7E-11 70.9 4.3 58 482-549 1-59 (61)
47 PTZ00202 tuzin; Provisional 98.2 1.1E-05 2.4E-10 87.5 11.9 96 74-181 257-352 (550)
48 KOG2120 SCF ubiquitin ligase, 98.2 2.4E-08 5.1E-13 100.4 -8.6 87 979-1085 209-298 (419)
49 COG3899 Predicted ATPase [Gene 98.1 6.3E-05 1.4E-09 93.7 18.7 159 223-400 211-383 (849)
50 KOG2120 SCF ubiquitin ligase, 98.1 4.9E-08 1.1E-12 98.2 -6.9 132 933-1064 186-327 (419)
51 PRK06893 DNA replication initi 98.1 3.3E-05 7.2E-10 81.0 13.8 153 107-279 40-205 (229)
52 KOG0532 Leucine-rich repeat (L 98.1 4.3E-07 9.3E-12 99.9 -0.6 155 506-677 112-270 (722)
53 COG2255 RuvB Holliday junction 98.0 9.7E-05 2.1E-09 75.0 14.1 178 79-272 26-218 (332)
54 KOG1259 Nischarin, modulator o 98.0 1.4E-06 3.1E-11 87.7 -0.2 137 478-636 280-416 (490)
55 COG4886 Leucine-rich repeat (L 98.0 4E-06 8.7E-11 97.3 3.4 172 480-676 114-286 (394)
56 PF05496 RuvB_N: Holliday junc 97.9 2.5E-05 5.4E-10 77.8 7.6 181 78-274 23-218 (233)
57 COG4886 Leucine-rich repeat (L 97.8 1.2E-05 2.5E-10 93.4 4.4 176 933-1115 117-294 (394)
58 PF13855 LRR_8: Leucine rich r 97.8 1.5E-05 3.2E-10 63.6 3.4 39 1121-1160 21-59 (61)
59 PRK05564 DNA polymerase III su 97.8 0.00036 7.9E-09 77.4 14.8 174 79-276 4-189 (313)
60 PRK07003 DNA polymerase III su 97.8 0.0014 3.1E-08 77.4 19.8 177 79-278 16-222 (830)
61 COG2256 MGS1 ATPase related to 97.8 0.0001 2.2E-09 78.9 9.6 148 105-271 47-206 (436)
62 TIGR03420 DnaA_homol_Hda DnaA 97.8 0.00026 5.7E-09 74.8 12.8 170 85-280 23-204 (226)
63 PRK13342 recombination factor 97.8 0.00026 5.6E-09 81.7 13.5 171 79-278 12-197 (413)
64 PRK14960 DNA polymerase III su 97.7 0.00099 2.2E-08 77.8 17.7 171 79-272 15-214 (702)
65 COG1474 CDC6 Cdc6-related prot 97.7 0.0034 7.5E-08 70.0 21.5 194 80-276 18-237 (366)
66 PRK14961 DNA polymerase III su 97.7 0.00048 1E-08 77.9 15.1 172 79-273 16-216 (363)
67 KOG0532 Leucine-rich repeat (L 97.7 1.3E-06 2.9E-11 96.1 -5.3 158 970-1161 88-245 (722)
68 PF13191 AAA_16: AAA ATPase do 97.7 2.6E-05 5.7E-10 79.7 4.4 48 80-130 1-48 (185)
69 KOG1909 Ran GTPase-activating 97.7 1E-06 2.2E-11 91.5 -6.5 84 932-1015 30-131 (382)
70 PF12799 LRR_4: Leucine Rich r 97.7 3.3E-05 7.2E-10 55.9 3.0 33 516-549 2-34 (44)
71 PRK08084 DNA replication initi 97.7 0.00075 1.6E-08 71.1 14.4 152 107-278 46-210 (235)
72 TIGR02903 spore_lon_C ATP-depe 97.7 0.00067 1.5E-08 81.7 15.7 191 79-279 154-397 (615)
73 PF05621 TniB: Bacterial TniB 97.6 0.0018 4E-08 68.2 16.3 192 78-274 33-258 (302)
74 PRK14949 DNA polymerase III su 97.6 0.0005 1.1E-08 82.8 13.5 176 79-277 16-221 (944)
75 PF13401 AAA_22: AAA domain; P 97.6 0.00015 3.2E-09 69.0 7.4 106 106-213 4-125 (131)
76 PRK08727 hypothetical protein; 97.6 0.0023 5.1E-08 67.3 16.8 148 107-274 42-201 (233)
77 PLN03150 hypothetical protein; 97.6 7.1E-05 1.5E-09 90.9 5.7 106 483-599 419-525 (623)
78 PRK14963 DNA polymerase III su 97.6 0.00015 3.3E-09 84.4 8.2 173 79-274 14-214 (504)
79 KOG0531 Protein phosphatase 1, 97.6 2E-05 4.3E-10 91.5 0.6 195 951-1161 90-288 (414)
80 TIGR01242 26Sp45 26S proteasom 97.6 0.0006 1.3E-08 77.4 12.5 179 79-271 122-328 (364)
81 PRK14957 DNA polymerase III su 97.5 0.00095 2.1E-08 78.0 14.0 179 79-280 16-224 (546)
82 KOG2028 ATPase related to the 97.5 0.0018 4E-08 67.9 14.3 124 104-244 160-294 (554)
83 PLN03150 hypothetical protein; 97.5 0.00016 3.6E-09 87.8 8.0 90 933-1022 419-508 (623)
84 PRK00440 rfc replication facto 97.5 0.00092 2E-08 75.2 13.6 171 79-274 17-200 (319)
85 PRK12402 replication factor C 97.5 0.0016 3.4E-08 73.9 15.3 187 79-275 15-224 (337)
86 PF12799 LRR_4: Leucine Rich r 97.5 0.00013 2.9E-09 52.8 3.6 41 482-533 1-41 (44)
87 cd01128 rho_factor Transcripti 97.5 0.00018 3.9E-09 75.4 6.2 54 107-160 17-72 (249)
88 PRK14962 DNA polymerase III su 97.5 0.0018 3.9E-08 75.0 14.6 180 79-281 14-223 (472)
89 PRK09376 rho transcription ter 97.4 0.00013 2.9E-09 79.4 5.0 52 107-158 170-223 (416)
90 PRK04195 replication factor C 97.4 0.0096 2.1E-07 70.4 21.0 242 79-355 14-271 (482)
91 PRK05896 DNA polymerase III su 97.4 0.0029 6.2E-08 74.1 16.0 177 79-279 16-223 (605)
92 PRK12323 DNA polymerase III su 97.4 0.0027 5.8E-08 74.1 15.5 174 79-275 16-223 (700)
93 PRK05642 DNA replication initi 97.4 0.0042 9.2E-08 65.3 16.0 153 107-279 46-210 (234)
94 PRK06645 DNA polymerase III su 97.4 0.0029 6.2E-08 73.6 15.6 171 79-272 21-224 (507)
95 TIGR02397 dnaX_nterm DNA polym 97.4 0.003 6.4E-08 72.2 15.7 176 79-277 14-218 (355)
96 PLN03025 replication factor C 97.4 0.0021 4.6E-08 71.5 14.1 169 79-271 13-194 (319)
97 PRK07994 DNA polymerase III su 97.4 0.0013 2.8E-08 78.2 12.6 173 79-277 16-221 (647)
98 PRK07940 DNA polymerase III su 97.4 0.0028 6.1E-08 71.5 14.7 176 79-277 5-213 (394)
99 KOG3665 ZYG-1-like serine/thre 97.4 0.00011 2.5E-09 88.5 3.9 136 482-631 122-262 (699)
100 PRK14956 DNA polymerase III su 97.4 0.0021 4.6E-08 73.0 13.4 182 79-271 18-216 (484)
101 KOG1859 Leucine-rich repeat pr 97.4 4.4E-06 9.6E-11 94.5 -7.6 123 1051-1185 165-291 (1096)
102 KOG1909 Ran GTPase-activating 97.4 8.1E-05 1.8E-09 77.8 2.0 243 473-737 49-308 (382)
103 PRK09087 hypothetical protein; 97.3 0.0087 1.9E-07 62.3 16.9 142 107-277 45-195 (226)
104 cd00009 AAA The AAA+ (ATPases 97.3 0.0012 2.5E-08 64.5 10.1 59 82-147 1-59 (151)
105 PF00308 Bac_DnaA: Bacterial d 97.3 0.0044 9.4E-08 64.3 14.5 176 78-276 8-207 (219)
106 PRK14964 DNA polymerase III su 97.3 0.0024 5.2E-08 73.5 13.6 171 79-272 13-212 (491)
107 PF13173 AAA_14: AAA domain 97.3 0.00022 4.7E-09 67.2 4.3 115 107-236 3-127 (128)
108 PRK14951 DNA polymerase III su 97.3 0.002 4.4E-08 76.4 13.2 172 79-273 16-221 (618)
109 KOG0531 Protein phosphatase 1, 97.3 5.8E-05 1.2E-09 87.6 0.4 169 930-1108 93-265 (414)
110 TIGR00678 holB DNA polymerase 97.3 0.0042 9.1E-08 63.2 13.5 142 107-272 15-186 (188)
111 PRK08903 DnaA regulatory inact 97.3 0.0029 6.2E-08 66.8 12.7 171 82-281 22-203 (227)
112 PRK07471 DNA polymerase III su 97.2 0.0021 4.6E-08 71.9 11.8 182 78-278 18-239 (365)
113 PRK14958 DNA polymerase III su 97.2 0.0027 5.9E-08 74.4 13.1 172 79-273 16-216 (509)
114 PF14516 AAA_35: AAA-like doma 97.2 0.058 1.2E-06 60.2 22.4 191 78-284 10-246 (331)
115 PRK08691 DNA polymerase III su 97.2 0.012 2.7E-07 69.7 17.6 173 79-274 16-217 (709)
116 PRK11331 5-methylcytosine-spec 97.2 0.0012 2.5E-08 74.0 8.4 68 79-154 175-243 (459)
117 PRK09111 DNA polymerase III su 97.1 0.0047 1E-07 73.6 13.9 174 78-275 23-231 (598)
118 PRK13341 recombination factor 97.1 0.0031 6.8E-08 76.7 12.4 166 79-270 28-210 (725)
119 PRK08118 topology modulation p 97.1 0.00036 7.8E-09 68.9 2.9 34 107-140 2-37 (167)
120 PRK09112 DNA polymerase III su 97.1 0.018 4E-07 64.1 16.6 186 78-278 22-241 (351)
121 PRK14969 DNA polymerase III su 97.0 0.0043 9.4E-08 73.3 12.3 178 79-279 16-223 (527)
122 PRK14955 DNA polymerase III su 97.0 0.0066 1.4E-07 69.6 13.4 174 79-277 16-229 (397)
123 PTZ00361 26 proteosome regulat 97.0 0.0055 1.2E-07 69.8 12.0 51 79-129 183-240 (438)
124 TIGR03345 VI_ClpV1 type VI sec 97.0 0.0036 7.8E-08 78.3 11.4 45 79-129 187-231 (852)
125 KOG2982 Uncharacterized conser 97.0 0.0003 6.6E-09 71.6 1.4 84 479-573 68-156 (418)
126 PRK07764 DNA polymerase III su 96.9 0.012 2.6E-07 72.8 15.1 171 79-272 15-216 (824)
127 KOG1859 Leucine-rich repeat pr 96.9 7.8E-05 1.7E-09 84.9 -3.5 114 472-601 177-291 (1096)
128 COG0593 DnaA ATPase involved i 96.9 0.014 3E-07 64.9 13.8 157 77-247 86-260 (408)
129 PRK03992 proteasome-activating 96.9 0.0032 6.8E-08 71.8 9.2 51 79-129 131-188 (389)
130 PRK14087 dnaA chromosomal repl 96.9 0.028 6.1E-07 65.2 16.9 157 107-279 142-321 (450)
131 PRK07133 DNA polymerase III su 96.9 0.016 3.4E-07 69.6 15.0 177 79-278 18-221 (725)
132 PRK14959 DNA polymerase III su 96.9 0.012 2.5E-07 69.6 13.5 180 79-281 16-225 (624)
133 KOG1947 Leucine rich repeat pr 96.9 0.00013 2.8E-09 87.9 -2.6 35 907-941 187-223 (482)
134 TIGR02639 ClpA ATP-dependent C 96.8 0.012 2.7E-07 73.2 14.4 46 79-130 182-227 (731)
135 TIGR00362 DnaA chromosomal rep 96.8 0.05 1.1E-06 63.0 18.7 152 106-275 136-308 (405)
136 TIGR02881 spore_V_K stage V sp 96.8 0.013 2.8E-07 63.1 12.9 50 80-129 7-65 (261)
137 KOG1947 Leucine rich repeat pr 96.8 0.00012 2.6E-09 88.2 -3.3 111 931-1041 187-309 (482)
138 PHA02544 44 clamp loader, smal 96.8 0.0089 1.9E-07 66.9 11.7 46 79-129 21-66 (316)
139 PRK14954 DNA polymerase III su 96.8 0.028 6.1E-07 67.2 16.0 190 79-277 16-229 (620)
140 PRK14950 DNA polymerase III su 96.8 0.025 5.4E-07 68.3 15.7 175 79-277 16-221 (585)
141 KOG2982 Uncharacterized conser 96.7 0.00052 1.1E-08 69.9 1.1 182 932-1116 71-267 (418)
142 PRK06305 DNA polymerase III su 96.7 0.025 5.4E-07 65.6 14.9 176 79-278 17-224 (451)
143 PRK14952 DNA polymerase III su 96.7 0.034 7.4E-07 66.0 16.2 179 79-281 13-224 (584)
144 PRK06620 hypothetical protein; 96.7 0.045 9.8E-07 56.5 15.2 68 203-274 112-186 (214)
145 TIGR00767 rho transcription te 96.7 0.0025 5.5E-08 70.1 6.1 55 107-161 169-225 (415)
146 KOG2543 Origin recognition com 96.7 0.0086 1.9E-07 64.0 9.7 78 78-162 5-82 (438)
147 PRK14970 DNA polymerase III su 96.7 0.026 5.6E-07 64.5 14.6 171 79-272 17-204 (367)
148 PRK14953 DNA polymerase III su 96.6 0.037 7.9E-07 64.7 15.5 174 79-275 16-218 (486)
149 CHL00095 clpC Clp protease ATP 96.6 0.021 4.5E-07 72.1 14.6 45 79-129 179-223 (821)
150 smart00763 AAA_PrkA PrkA AAA d 96.6 0.002 4.2E-08 70.3 4.6 52 79-130 51-102 (361)
151 CHL00181 cbbX CbbX; Provisiona 96.6 0.12 2.5E-06 56.2 18.2 53 194-246 151-211 (287)
152 PRK14948 DNA polymerase III su 96.6 0.026 5.6E-07 67.9 14.1 173 79-275 16-220 (620)
153 PRK11034 clpA ATP-dependent Cl 96.6 0.017 3.6E-07 71.0 12.6 45 79-129 186-230 (758)
154 PRK07399 DNA polymerase III su 96.6 0.073 1.6E-06 58.5 16.3 187 79-278 4-222 (314)
155 COG1222 RPT1 ATP-dependent 26S 96.6 0.0096 2.1E-07 63.2 8.9 178 80-282 152-372 (406)
156 PRK14971 DNA polymerase III su 96.6 0.023 4.9E-07 68.4 13.4 175 79-272 17-217 (614)
157 PRK08451 DNA polymerase III su 96.6 0.029 6.4E-07 65.4 13.8 173 79-274 14-215 (535)
158 KOG2227 Pre-initiation complex 96.5 0.087 1.9E-06 58.3 15.8 165 78-245 149-339 (529)
159 KOG4579 Leucine-rich repeat (L 96.4 0.00035 7.6E-09 62.7 -2.1 81 478-569 49-129 (177)
160 TIGR03346 chaperone_ClpB ATP-d 96.4 0.034 7.4E-07 70.4 14.6 45 79-129 173-217 (852)
161 PRK07261 topology modulation p 96.4 0.0052 1.1E-07 61.1 5.8 33 108-140 2-36 (171)
162 PRK14088 dnaA chromosomal repl 96.4 0.087 1.9E-06 61.1 16.6 150 107-273 131-301 (440)
163 PRK12422 chromosomal replicati 96.4 0.072 1.6E-06 61.6 15.6 144 106-269 141-305 (445)
164 PRK06647 DNA polymerase III su 96.4 0.065 1.4E-06 63.8 15.5 173 79-274 16-217 (563)
165 PRK14965 DNA polymerase III su 96.4 0.036 7.9E-07 66.5 13.5 178 79-279 16-223 (576)
166 PF13207 AAA_17: AAA domain; P 96.3 0.0028 6E-08 59.2 3.0 22 108-129 1-22 (121)
167 PRK00149 dnaA chromosomal repl 96.3 0.086 1.9E-06 61.9 16.1 149 106-274 148-319 (450)
168 TIGR02880 cbbX_cfxQ probable R 96.3 0.094 2E-06 56.9 15.1 54 191-244 147-208 (284)
169 KOG3665 ZYG-1-like serine/thre 96.3 0.0017 3.6E-08 78.7 1.5 152 932-1106 122-283 (699)
170 PTZ00454 26S protease regulato 96.3 0.012 2.5E-07 66.8 8.1 50 80-129 146-202 (398)
171 PRK06696 uridine kinase; Valid 96.2 0.0057 1.2E-07 64.1 5.2 44 83-129 2-45 (223)
172 TIGR03689 pup_AAA proteasome A 96.2 0.034 7.3E-07 64.6 11.6 51 79-129 182-239 (512)
173 KOG1644 U2-associated snRNP A' 96.2 0.0091 2E-07 57.9 5.7 80 1028-1109 43-124 (233)
174 PRK10865 protein disaggregatio 96.1 0.093 2E-06 66.3 15.8 46 79-130 178-223 (857)
175 KOG0989 Replication factor C, 96.0 0.0092 2E-07 61.9 5.4 172 78-270 35-223 (346)
176 KOG0744 AAA+-type ATPase [Post 96.0 0.064 1.4E-06 56.1 11.2 57 107-163 178-248 (423)
177 PRK05707 DNA polymerase III su 96.0 0.13 2.8E-06 56.9 14.6 81 189-277 121-203 (328)
178 PRK14086 dnaA chromosomal repl 96.0 0.26 5.6E-06 58.3 17.6 149 107-271 315-482 (617)
179 PRK05563 DNA polymerase III su 95.9 0.16 3.6E-06 60.7 16.0 172 79-273 16-216 (559)
180 PRK11889 flhF flagellar biosyn 95.9 0.066 1.4E-06 59.0 11.1 74 105-179 240-314 (436)
181 COG1618 Predicted nucleotide k 95.8 0.0082 1.8E-07 56.0 3.4 31 106-136 5-35 (179)
182 KOG4579 Leucine-rich repeat (L 95.8 0.0019 4.2E-08 58.1 -0.7 84 484-576 29-113 (177)
183 KOG2004 Mitochondrial ATP-depe 95.7 0.0098 2.1E-07 68.6 4.4 69 78-150 410-478 (906)
184 PF00448 SRP54: SRP54-type pro 95.7 0.022 4.8E-07 57.7 6.4 58 106-164 1-59 (196)
185 COG1223 Predicted ATPase (AAA+ 95.7 0.23 4.9E-06 50.4 13.0 183 79-271 121-319 (368)
186 PRK08058 DNA polymerase III su 95.6 0.19 4.1E-06 56.0 13.9 145 80-243 6-181 (329)
187 KOG0741 AAA+-type ATPase [Post 95.6 0.22 4.8E-06 55.7 13.7 152 104-267 536-704 (744)
188 KOG1644 U2-associated snRNP A' 95.5 0.011 2.3E-07 57.5 2.9 59 484-555 44-103 (233)
189 TIGR01241 FtsH_fam ATP-depende 95.4 0.13 2.9E-06 61.1 12.8 51 78-129 54-111 (495)
190 PRK15455 PrkA family serine pr 95.4 0.012 2.6E-07 67.5 3.7 52 78-129 75-126 (644)
191 PRK07667 uridine kinase; Provi 95.4 0.021 4.5E-07 58.2 5.2 38 88-129 3-40 (193)
192 COG1419 FlhF Flagellar GTP-bin 95.3 0.087 1.9E-06 58.0 9.8 75 106-180 203-279 (407)
193 CHL00176 ftsH cell division pr 95.3 0.11 2.4E-06 62.7 11.7 51 79-129 183-239 (638)
194 COG0466 Lon ATP-dependent Lon 95.3 0.014 3.1E-07 67.7 3.8 57 78-135 322-378 (782)
195 PRK06090 DNA polymerase III su 95.3 0.53 1.2E-05 51.5 15.7 77 189-277 123-201 (319)
196 COG2884 FtsE Predicted ATPase 95.2 0.086 1.9E-06 51.0 8.0 23 107-129 29-51 (223)
197 PRK08769 DNA polymerase III su 95.2 0.55 1.2E-05 51.5 15.4 76 193-278 132-209 (319)
198 PF00560 LRR_1: Leucine Rich R 95.1 0.012 2.5E-07 35.3 1.2 16 484-499 2-17 (22)
199 COG3267 ExeA Type II secretory 95.0 1.6 3.5E-05 44.9 16.8 167 106-279 51-247 (269)
200 PF00485 PRK: Phosphoribulokin 95.0 0.065 1.4E-06 54.7 7.5 29 108-136 1-29 (194)
201 PF00560 LRR_1: Leucine Rich R 95.0 0.01 2.3E-07 35.4 0.9 21 516-537 1-21 (22)
202 KOG2739 Leucine-rich acidic nu 95.0 0.0097 2.1E-07 60.5 1.3 37 1073-1109 91-127 (260)
203 PF13238 AAA_18: AAA domain; P 95.0 0.017 3.6E-07 54.6 2.8 21 109-129 1-21 (129)
204 PRK13531 regulatory ATPase Rav 94.9 0.029 6.3E-07 63.8 4.9 43 79-129 20-62 (498)
205 COG5238 RNA1 Ran GTPase-activa 94.9 0.032 6.8E-07 56.7 4.6 186 474-678 50-253 (388)
206 COG1102 Cmk Cytidylate kinase 94.9 0.029 6.3E-07 52.5 3.8 44 108-163 2-45 (179)
207 PF05673 DUF815: Protein of un 94.7 0.81 1.7E-05 47.1 14.1 53 75-129 23-75 (249)
208 PTZ00301 uridine kinase; Provi 94.7 0.036 7.7E-07 56.8 4.6 24 106-129 3-26 (210)
209 COG0572 Udk Uridine kinase [Nu 94.7 0.052 1.1E-06 54.6 5.5 25 105-129 7-31 (218)
210 KOG0991 Replication factor C, 94.7 0.037 8.1E-07 54.7 4.3 65 79-149 27-92 (333)
211 cd02019 NK Nucleoside/nucleoti 94.7 0.023 5E-07 46.3 2.5 22 108-129 1-22 (69)
212 PRK05541 adenylylsulfate kinas 94.7 0.031 6.8E-07 56.1 4.1 37 105-142 6-42 (176)
213 KOG0730 AAA+-type ATPase [Post 94.6 0.77 1.7E-05 53.5 14.9 56 79-135 434-496 (693)
214 KOG0728 26S proteasome regulat 94.6 0.24 5.2E-06 49.6 9.5 61 80-146 147-215 (404)
215 PF07726 AAA_3: ATPase family 94.6 0.019 4E-07 52.2 1.7 27 109-136 2-28 (131)
216 PRK08233 hypothetical protein; 94.6 0.029 6.3E-07 56.9 3.4 23 107-129 4-26 (182)
217 TIGR02237 recomb_radB DNA repa 94.5 0.06 1.3E-06 55.9 5.9 46 106-153 12-57 (209)
218 KOG2123 Uncharacterized conser 94.5 0.003 6.4E-08 64.0 -3.7 98 1074-1180 20-124 (388)
219 PRK06871 DNA polymerase III su 94.5 0.16 3.5E-06 55.7 9.1 77 189-274 122-200 (325)
220 PRK05439 pantothenate kinase; 94.5 0.19 4.2E-06 54.4 9.6 26 104-129 84-109 (311)
221 PRK10536 hypothetical protein; 94.5 0.18 3.9E-06 52.5 8.8 49 80-136 56-105 (262)
222 PRK06762 hypothetical protein; 94.4 0.033 7.1E-07 55.4 3.4 24 106-129 2-25 (166)
223 PRK05480 uridine/cytidine kina 94.4 0.035 7.6E-07 57.6 3.8 26 104-129 4-29 (209)
224 PF13177 DNA_pol3_delta2: DNA 94.4 0.58 1.3E-05 45.9 12.0 130 83-231 1-161 (162)
225 TIGR00150 HI0065_YjeE ATPase, 94.4 0.063 1.4E-06 49.9 4.8 41 86-130 6-46 (133)
226 PRK06547 hypothetical protein; 94.3 0.059 1.3E-06 53.3 5.0 26 104-129 13-38 (172)
227 PF13671 AAA_33: AAA domain; P 94.3 0.032 7E-07 53.8 3.0 22 108-129 1-22 (143)
228 smart00382 AAA ATPases associa 94.3 0.046 9.9E-07 52.7 4.1 39 107-146 3-41 (148)
229 KOG2035 Replication factor C, 94.3 0.13 2.8E-06 52.7 7.0 166 81-271 15-222 (351)
230 PRK09270 nucleoside triphospha 94.3 0.16 3.4E-06 53.5 8.3 26 104-129 31-56 (229)
231 CHL00195 ycf46 Ycf46; Provisio 94.2 0.31 6.6E-06 56.9 11.2 51 79-129 228-282 (489)
232 PF01583 APS_kinase: Adenylyls 94.2 0.049 1.1E-06 52.2 3.9 35 107-142 3-37 (156)
233 KOG0731 AAA+-type ATPase conta 94.2 0.3 6.5E-06 58.5 11.1 187 79-275 311-522 (774)
234 PRK09361 radB DNA repair and r 94.2 0.1 2.2E-06 55.0 6.7 43 106-150 23-65 (225)
235 PF10443 RNA12: RNA12 protein; 94.2 1.8 3.9E-05 48.5 16.3 92 203-294 182-296 (431)
236 PHA00729 NTP-binding motif con 94.2 0.061 1.3E-06 54.9 4.7 25 105-129 16-40 (226)
237 cd01394 radB RadB. The archaea 94.2 0.12 2.6E-06 54.1 7.3 41 106-147 19-59 (218)
238 TIGR00235 udk uridine kinase. 94.1 0.041 9E-07 56.9 3.6 26 104-129 4-29 (207)
239 PRK13765 ATP-dependent proteas 94.1 0.07 1.5E-06 64.0 5.9 76 78-162 30-105 (637)
240 COG0003 ArsA Predicted ATPase 94.1 0.067 1.4E-06 58.2 5.2 49 106-155 2-50 (322)
241 TIGR00554 panK_bact pantothena 94.1 0.21 4.5E-06 53.8 8.8 25 104-128 60-84 (290)
242 PF00004 AAA: ATPase family as 94.1 0.036 7.9E-07 52.5 2.9 21 109-129 1-21 (132)
243 cd01123 Rad51_DMC1_radA Rad51_ 94.1 0.12 2.6E-06 54.9 7.1 46 106-151 19-69 (235)
244 PF03205 MobB: Molybdopterin g 94.1 0.058 1.3E-06 51.2 4.1 39 107-145 1-39 (140)
245 cd02025 PanK Pantothenate kina 94.1 0.13 2.9E-06 53.3 7.1 22 108-129 1-22 (220)
246 KOG4252 GTP-binding protein [S 94.0 0.18 3.8E-06 47.6 6.9 37 107-143 21-57 (246)
247 COG1373 Predicted ATPase (AAA+ 94.0 0.28 6E-06 56.1 10.1 118 108-240 39-163 (398)
248 PRK04040 adenylate kinase; Pro 94.0 0.043 9.2E-07 55.3 3.2 23 107-129 3-25 (188)
249 PRK03839 putative kinase; Prov 94.0 0.041 8.8E-07 55.5 3.0 22 108-129 2-23 (180)
250 COG3640 CooC CO dehydrogenase 93.9 0.075 1.6E-06 53.3 4.6 41 108-149 2-43 (255)
251 COG1428 Deoxynucleoside kinase 93.9 0.043 9.3E-07 54.3 2.8 24 106-129 4-27 (216)
252 PRK14974 cell division protein 93.8 0.22 4.7E-06 54.9 8.6 59 104-163 138-197 (336)
253 TIGR01243 CDC48 AAA family ATP 93.8 0.35 7.7E-06 60.7 11.6 51 79-129 178-235 (733)
254 TIGR00390 hslU ATP-dependent p 93.8 0.17 3.7E-06 56.5 7.6 82 78-160 11-104 (441)
255 KOG2739 Leucine-rich acidic nu 93.8 0.036 7.8E-07 56.5 2.2 37 513-549 63-101 (260)
256 COG2019 AdkA Archaeal adenylat 93.8 0.059 1.3E-06 50.7 3.4 47 106-163 4-50 (189)
257 PRK14722 flhF flagellar biosyn 93.8 0.16 3.4E-06 56.6 7.4 69 106-174 137-207 (374)
258 PF14532 Sigma54_activ_2: Sigm 93.7 0.026 5.7E-07 53.9 1.1 44 82-129 1-44 (138)
259 TIGR03499 FlhF flagellar biosy 93.7 0.17 3.7E-06 54.9 7.5 40 105-144 193-233 (282)
260 PRK00625 shikimate kinase; Pro 93.7 0.046 1E-06 54.1 2.8 22 108-129 2-23 (173)
261 PF00910 RNA_helicase: RNA hel 93.7 0.041 8.9E-07 49.7 2.2 21 109-129 1-21 (107)
262 cd01393 recA_like RecA is a b 93.7 0.17 3.7E-06 53.3 7.4 45 106-151 19-69 (226)
263 PRK05201 hslU ATP-dependent pr 93.6 0.16 3.5E-06 56.6 7.1 52 78-129 14-73 (443)
264 TIGR01243 CDC48 AAA family ATP 93.6 0.44 9.4E-06 59.9 11.8 51 79-129 453-510 (733)
265 PRK05703 flhF flagellar biosyn 93.6 0.28 6E-06 56.4 9.2 40 106-145 221-261 (424)
266 PRK12608 transcription termina 93.6 0.28 6.1E-06 54.1 8.6 73 87-164 119-193 (380)
267 KOG0727 26S proteasome regulat 93.5 0.18 3.9E-06 50.5 6.3 55 80-135 156-217 (408)
268 PRK00771 signal recognition pa 93.5 0.16 3.4E-06 58.2 6.9 76 87-163 74-152 (437)
269 COG0237 CoaE Dephospho-CoA kin 93.4 0.16 3.4E-06 51.4 6.1 22 107-128 3-24 (201)
270 TIGR01360 aden_kin_iso1 adenyl 93.4 0.062 1.3E-06 54.8 3.3 24 106-129 3-26 (188)
271 COG1936 Predicted nucleotide k 93.4 0.055 1.2E-06 51.6 2.5 20 108-127 2-21 (180)
272 PRK07993 DNA polymerase III su 93.4 2.2 4.7E-05 47.5 15.4 166 87-275 10-202 (334)
273 cd02024 NRK1 Nicotinamide ribo 93.3 0.054 1.2E-06 54.1 2.5 22 108-129 1-22 (187)
274 PRK10865 protein disaggregatio 93.3 1.1 2.5E-05 56.7 14.8 51 79-129 568-621 (857)
275 PRK12727 flagellar biosynthesi 93.2 0.29 6.3E-06 56.5 8.4 38 106-143 350-388 (559)
276 PF08298 AAA_PrkA: PrkA AAA do 93.2 0.11 2.4E-06 56.3 4.8 52 78-129 60-111 (358)
277 PF03308 ArgK: ArgK protein; 93.2 0.14 3E-06 52.8 5.2 62 87-152 14-76 (266)
278 PRK12726 flagellar biosynthesi 93.1 0.21 4.7E-06 54.9 6.9 72 104-176 204-276 (407)
279 KOG2228 Origin recognition com 93.1 0.81 1.8E-05 48.7 10.6 161 79-244 24-219 (408)
280 PF13245 AAA_19: Part of AAA d 93.0 0.19 4.2E-06 41.6 5.1 23 107-129 11-33 (76)
281 PRK05800 cobU adenosylcobinami 93.0 0.095 2.1E-06 51.7 3.8 22 108-129 3-24 (170)
282 PRK00131 aroK shikimate kinase 93.0 0.074 1.6E-06 53.4 3.1 24 106-129 4-27 (175)
283 COG0542 clpA ATP-binding subun 93.0 0.12 2.5E-06 62.4 5.1 50 79-134 170-219 (786)
284 KOG1969 DNA replication checkp 92.9 0.23 4.9E-06 58.2 7.0 55 104-162 324-378 (877)
285 TIGR01359 UMP_CMP_kin_fam UMP- 92.9 0.063 1.4E-06 54.4 2.5 22 108-129 1-22 (183)
286 cd02028 UMPK_like Uridine mono 92.9 0.082 1.8E-06 53.0 3.2 22 108-129 1-22 (179)
287 TIGR00764 lon_rel lon-related 92.9 0.2 4.2E-06 60.6 6.9 76 78-162 17-92 (608)
288 COG1136 SalX ABC-type antimicr 92.9 0.87 1.9E-05 46.6 10.4 22 107-128 32-53 (226)
289 PF07728 AAA_5: AAA domain (dy 92.8 0.078 1.7E-06 50.8 2.9 42 109-155 2-44 (139)
290 PF02562 PhoH: PhoH-like prote 92.8 0.12 2.6E-06 52.2 4.2 52 83-142 4-56 (205)
291 PF13306 LRR_5: Leucine rich r 92.8 0.31 6.7E-06 45.9 6.9 102 1047-1159 9-112 (129)
292 PRK12339 2-phosphoglycerate ki 92.8 0.092 2E-06 53.2 3.4 24 106-129 3-26 (197)
293 TIGR02322 phosphon_PhnN phosph 92.8 0.083 1.8E-06 53.3 3.1 23 107-129 2-24 (179)
294 COG0467 RAD55 RecA-superfamily 92.8 0.11 2.4E-06 55.9 4.3 42 105-147 22-63 (260)
295 TIGR00064 ftsY signal recognit 92.8 0.2 4.3E-06 53.9 6.0 40 104-144 70-109 (272)
296 COG0714 MoxR-like ATPases [Gen 92.7 0.21 4.6E-06 55.9 6.6 65 79-155 24-88 (329)
297 PRK06217 hypothetical protein; 92.7 0.089 1.9E-06 53.2 3.2 23 108-130 3-25 (183)
298 COG0194 Gmk Guanylate kinase [ 92.7 0.14 3E-06 49.7 4.2 23 107-129 5-27 (191)
299 PF13306 LRR_5: Leucine rich r 92.7 0.55 1.2E-05 44.1 8.5 53 1093-1152 76-128 (129)
300 PRK15453 phosphoribulokinase; 92.7 0.54 1.2E-05 49.7 8.8 26 104-129 3-28 (290)
301 cd00227 CPT Chloramphenicol (C 92.7 0.084 1.8E-06 52.9 2.9 23 107-129 3-25 (175)
302 PF13504 LRR_7: Leucine rich r 92.7 0.074 1.6E-06 29.4 1.4 16 483-498 2-17 (17)
303 PRK00889 adenylylsulfate kinas 92.7 0.11 2.3E-06 52.2 3.6 24 106-129 4-27 (175)
304 cd03214 ABC_Iron-Siderophores_ 92.7 0.95 2.1E-05 45.5 10.6 33 107-141 26-58 (180)
305 COG1703 ArgK Putative periplas 92.6 0.16 3.4E-06 53.2 4.7 63 89-155 38-101 (323)
306 COG1224 TIP49 DNA helicase TIP 92.6 0.21 4.5E-06 53.2 5.7 49 78-130 38-89 (450)
307 cd02023 UMPK Uridine monophosp 92.6 0.076 1.7E-06 54.5 2.6 22 108-129 1-22 (198)
308 cd02021 GntK Gluconate kinase 92.6 0.078 1.7E-06 51.6 2.6 22 108-129 1-22 (150)
309 TIGR02012 tigrfam_recA protein 92.6 0.4 8.7E-06 52.3 8.2 44 105-149 54-97 (321)
310 cd03223 ABCD_peroxisomal_ALDP 92.6 1 2.2E-05 44.5 10.5 23 107-129 28-50 (166)
311 COG0563 Adk Adenylate kinase a 92.6 0.085 1.8E-06 52.4 2.8 22 108-129 2-23 (178)
312 PRK12724 flagellar biosynthesi 92.6 0.19 4.2E-06 56.3 5.8 24 106-129 223-246 (432)
313 KOG0733 Nuclear AAA ATPase (VC 92.5 1.6 3.6E-05 50.2 12.7 52 78-129 189-246 (802)
314 PRK10751 molybdopterin-guanine 92.4 0.12 2.6E-06 50.6 3.5 25 105-129 5-29 (173)
315 TIGR02639 ClpA ATP-dependent C 92.4 1.2 2.5E-05 55.9 13.1 63 79-145 454-519 (731)
316 KOG1532 GTPase XAB1, interacts 92.4 0.12 2.5E-06 52.7 3.4 60 104-164 17-87 (366)
317 PF00625 Guanylate_kin: Guanyl 92.3 0.12 2.5E-06 52.3 3.5 34 107-141 3-36 (183)
318 PF06309 Torsin: Torsin; Inte 92.3 0.58 1.3E-05 42.6 7.4 51 79-130 25-77 (127)
319 cd03221 ABCF_EF-3 ABCF_EF-3 E 92.3 0.92 2E-05 43.6 9.5 23 107-129 27-49 (144)
320 PRK13949 shikimate kinase; Pro 92.3 0.1 2.2E-06 51.7 2.9 22 108-129 3-24 (169)
321 PRK04301 radA DNA repair and r 92.3 0.34 7.3E-06 53.9 7.4 49 106-154 102-155 (317)
322 PF03193 DUF258: Protein of un 92.2 0.2 4.3E-06 48.3 4.7 36 85-129 23-58 (161)
323 cd00071 GMPK Guanosine monopho 92.2 0.11 2.3E-06 49.4 2.9 21 109-129 2-22 (137)
324 PF03266 NTPase_1: NTPase; In 92.2 0.12 2.5E-06 51.0 3.2 21 109-129 2-22 (168)
325 PRK14737 gmk guanylate kinase; 92.2 0.13 2.9E-06 51.7 3.6 25 105-129 3-27 (186)
326 cd02020 CMPK Cytidine monophos 92.2 0.093 2E-06 50.9 2.5 22 108-129 1-22 (147)
327 PRK06964 DNA polymerase III su 92.1 2 4.3E-05 47.7 12.9 77 189-277 147-225 (342)
328 PRK13947 shikimate kinase; Pro 92.1 0.1 2.3E-06 52.1 2.8 22 108-129 3-24 (171)
329 cd01120 RecA-like_NTPases RecA 92.0 0.13 2.8E-06 50.9 3.4 39 108-147 1-39 (165)
330 KOG3347 Predicted nucleotide k 92.0 0.11 2.3E-06 47.9 2.4 35 107-147 8-42 (176)
331 TIGR00176 mobB molybdopterin-g 92.0 0.12 2.6E-06 50.1 3.0 33 108-140 1-33 (155)
332 PRK04296 thymidine kinase; Pro 92.0 0.15 3.2E-06 51.7 3.8 23 107-129 3-25 (190)
333 TIGR03263 guanyl_kin guanylate 92.0 0.11 2.5E-06 52.3 3.0 23 107-129 2-24 (180)
334 TIGR00602 rad24 checkpoint pro 92.0 0.19 4.1E-06 60.3 5.1 51 78-129 83-133 (637)
335 COG1124 DppF ABC-type dipeptid 92.0 0.18 3.9E-06 51.1 4.2 23 107-129 34-56 (252)
336 cd03228 ABCC_MRP_Like The MRP 92.0 0.84 1.8E-05 45.4 9.1 33 107-141 29-61 (171)
337 TIGR03346 chaperone_ClpB ATP-d 91.9 0.85 1.8E-05 58.1 11.2 51 79-129 565-618 (852)
338 COG4240 Predicted kinase [Gene 91.9 0.8 1.7E-05 45.6 8.3 56 104-160 48-104 (300)
339 PF04665 Pox_A32: Poxvirus A32 91.9 0.18 3.9E-06 52.2 4.3 35 108-143 15-49 (241)
340 PRK06995 flhF flagellar biosyn 91.9 0.69 1.5E-05 53.5 9.3 58 106-163 256-315 (484)
341 cd03247 ABCC_cytochrome_bd The 91.9 0.7 1.5E-05 46.4 8.5 23 107-129 29-51 (178)
342 PF02374 ArsA_ATPase: Anion-tr 91.9 0.16 3.5E-06 55.6 4.1 47 107-154 2-48 (305)
343 PRK09354 recA recombinase A; P 91.8 0.57 1.2E-05 51.6 8.2 44 105-149 59-102 (349)
344 PF00158 Sigma54_activat: Sigm 91.8 0.47 1E-05 46.8 6.9 45 81-129 1-45 (168)
345 PRK03846 adenylylsulfate kinas 91.8 0.15 3.3E-06 52.2 3.6 25 105-129 23-47 (198)
346 TIGR00763 lon ATP-dependent pr 91.8 0.15 3.2E-06 64.2 4.2 51 79-129 320-370 (775)
347 PRK12377 putative replication 91.8 0.12 2.6E-06 54.4 2.9 36 107-143 102-137 (248)
348 cd01133 F1-ATPase_beta F1 ATP 91.8 0.25 5.3E-06 52.3 5.1 49 107-156 70-120 (274)
349 TIGR02640 gas_vesic_GvpN gas v 91.7 0.36 7.8E-06 51.9 6.6 55 86-152 9-63 (262)
350 TIGR03345 VI_ClpV1 type VI sec 91.7 0.51 1.1E-05 59.6 8.7 51 79-129 566-619 (852)
351 COG0542 clpA ATP-binding subun 91.7 0.67 1.5E-05 56.1 9.2 52 78-129 490-544 (786)
352 TIGR03877 thermo_KaiC_1 KaiC d 91.7 0.48 1E-05 50.1 7.4 40 106-146 21-60 (237)
353 PRK14530 adenylate kinase; Pro 91.7 0.12 2.7E-06 53.8 2.9 23 107-129 4-26 (215)
354 cd00983 recA RecA is a bacter 91.7 0.33 7.2E-06 53.0 6.2 43 106-149 55-97 (325)
355 TIGR02236 recomb_radA DNA repa 91.6 0.5 1.1E-05 52.5 7.8 54 106-160 95-153 (310)
356 PF08423 Rad51: Rad51; InterP 91.6 0.35 7.5E-06 51.6 6.2 53 107-160 39-96 (256)
357 TIGR01425 SRP54_euk signal rec 91.6 0.33 7.2E-06 55.0 6.3 39 105-144 99-137 (429)
358 cd03115 SRP The signal recogni 91.6 0.28 6.1E-06 49.0 5.3 22 108-129 2-23 (173)
359 PRK10463 hydrogenase nickel in 91.6 0.34 7.4E-06 51.7 6.0 26 104-129 102-127 (290)
360 PRK06761 hypothetical protein; 91.6 0.17 3.8E-06 53.9 3.8 24 107-130 4-27 (282)
361 PRK05057 aroK shikimate kinase 91.5 0.14 3.1E-06 50.8 3.0 23 107-129 5-27 (172)
362 PLN02200 adenylate kinase fami 91.5 0.16 3.5E-06 53.2 3.5 26 104-129 41-66 (234)
363 PLN02348 phosphoribulokinase 91.5 0.24 5.2E-06 55.0 4.8 26 104-129 47-72 (395)
364 cd02027 APSK Adenosine 5'-phos 91.5 0.13 2.8E-06 49.7 2.6 22 108-129 1-22 (149)
365 PRK12723 flagellar biosynthesi 91.5 0.47 1E-05 53.5 7.3 69 105-173 173-245 (388)
366 PRK13948 shikimate kinase; Pro 91.5 0.17 3.6E-06 50.6 3.3 25 105-129 9-33 (182)
367 COG5238 RNA1 Ran GTPase-activa 91.4 0.052 1.1E-06 55.1 -0.2 176 932-1108 30-252 (388)
368 PRK14738 gmk guanylate kinase; 91.4 0.18 3.8E-06 52.0 3.6 26 104-129 11-36 (206)
369 TIGR01287 nifH nitrogenase iro 91.4 0.14 3E-06 55.8 3.0 41 107-148 1-41 (275)
370 KOG0079 GTP-binding protein H- 91.4 0.7 1.5E-05 42.2 6.7 112 110-221 12-143 (198)
371 PF08477 Miro: Miro-like prote 91.4 0.16 3.5E-06 47.0 3.0 22 109-130 2-23 (119)
372 PRK14721 flhF flagellar biosyn 91.3 0.68 1.5E-05 52.6 8.4 69 105-173 190-260 (420)
373 PF06068 TIP49: TIP49 C-termin 91.3 0.37 8.1E-06 52.4 6.0 53 78-135 23-78 (398)
374 cd00464 SK Shikimate kinase (S 91.3 0.14 3.1E-06 50.0 2.8 21 109-129 2-22 (154)
375 PHA02244 ATPase-like protein 91.3 0.26 5.6E-06 54.1 4.9 44 78-129 95-142 (383)
376 cd00820 PEPCK_HprK Phosphoenol 91.3 0.19 4.1E-06 44.6 3.1 21 107-127 16-36 (107)
377 PLN02318 phosphoribulokinase/u 91.3 0.25 5.4E-06 57.5 4.8 26 104-129 63-88 (656)
378 KOG2123 Uncharacterized conser 91.2 0.026 5.7E-07 57.4 -2.5 81 477-569 36-123 (388)
379 COG2812 DnaX DNA polymerase II 91.2 1.5 3.2E-05 51.0 11.0 176 79-270 16-213 (515)
380 PRK13975 thymidylate kinase; P 91.2 0.16 3.6E-06 52.0 3.2 23 107-129 3-25 (196)
381 PRK08699 DNA polymerase III su 91.2 1.2 2.5E-05 49.4 9.9 26 105-130 20-45 (325)
382 TIGR01650 PD_CobS cobaltochela 91.2 0.4 8.7E-06 52.1 6.1 43 79-129 45-87 (327)
383 PRK00300 gmk guanylate kinase; 91.1 0.16 3.4E-06 52.6 3.0 23 107-129 6-28 (205)
384 PRK06526 transposase; Provisio 91.1 0.22 4.9E-06 52.8 4.2 29 107-135 99-127 (254)
385 PRK10787 DNA-binding ATP-depen 91.1 0.19 4.2E-06 62.4 4.2 52 78-129 321-372 (784)
386 PRK13946 shikimate kinase; Pro 91.0 0.16 3.6E-06 51.2 2.9 24 106-129 10-33 (184)
387 COG0468 RecA RecA/RadA recombi 91.0 0.53 1.1E-05 50.1 6.7 50 104-154 58-107 (279)
388 PRK07952 DNA replication prote 91.0 0.27 5.9E-06 51.6 4.6 35 107-142 100-134 (244)
389 TIGR01313 therm_gnt_kin carboh 91.0 0.14 3E-06 50.7 2.3 21 109-129 1-21 (163)
390 PRK05973 replicative DNA helic 91.0 0.41 9E-06 49.7 5.8 46 107-155 65-110 (237)
391 PF13521 AAA_28: AAA domain; P 91.0 0.16 3.6E-06 50.1 2.8 21 109-129 2-22 (163)
392 cd01124 KaiC KaiC is a circadi 91.0 0.19 4.2E-06 51.0 3.4 37 109-146 2-38 (187)
393 PRK13768 GTPase; Provisional 90.9 0.27 5.8E-06 52.4 4.5 23 107-129 3-25 (253)
394 PRK10078 ribose 1,5-bisphospho 90.9 0.18 3.9E-06 51.1 3.1 23 107-129 3-25 (186)
395 cd02117 NifH_like This family 90.9 0.17 3.6E-06 52.6 2.9 23 107-129 1-23 (212)
396 PRK14527 adenylate kinase; Pro 90.8 0.2 4.2E-06 51.1 3.2 24 106-129 6-29 (191)
397 KOG3308 Uncharacterized protei 90.8 0.7 1.5E-05 45.3 6.6 23 106-128 4-26 (225)
398 PF13504 LRR_7: Leucine rich r 90.8 0.14 2.9E-06 28.3 1.1 16 516-532 2-17 (17)
399 PRK05537 bifunctional sulfate 90.7 0.33 7.2E-06 58.0 5.6 47 79-129 369-415 (568)
400 TIGR03881 KaiC_arch_4 KaiC dom 90.7 0.7 1.5E-05 48.7 7.5 40 106-146 20-59 (229)
401 PF01078 Mg_chelatase: Magnesi 90.7 0.38 8.3E-06 48.3 5.0 42 79-128 3-44 (206)
402 COG1100 GTPase SAR1 and relate 90.7 0.27 6E-06 51.5 4.3 26 107-132 6-31 (219)
403 COG0529 CysC Adenylylsulfate k 90.6 0.26 5.6E-06 47.2 3.5 26 105-130 22-47 (197)
404 TIGR00959 ffh signal recogniti 90.5 1.1 2.3E-05 51.4 9.1 76 87-163 77-157 (428)
405 PRK13695 putative NTPase; Prov 90.5 0.22 4.8E-06 49.8 3.3 22 108-129 2-23 (174)
406 PRK09435 membrane ATPase/prote 90.5 0.38 8.2E-06 52.9 5.3 38 88-129 42-79 (332)
407 COG3638 ABC-type phosphate/pho 90.4 1 2.3E-05 45.5 7.7 89 107-198 31-120 (258)
408 PF06564 YhjQ: YhjQ protein; 90.4 0.21 4.5E-06 51.8 3.0 23 107-129 2-25 (243)
409 KOG3864 Uncharacterized conser 90.4 0.045 9.7E-07 53.4 -1.7 70 1094-1164 121-190 (221)
410 PF13604 AAA_30: AAA domain; P 90.4 0.59 1.3E-05 47.6 6.3 44 107-152 19-62 (196)
411 TIGR00073 hypB hydrogenase acc 90.4 0.24 5.2E-06 51.2 3.5 26 104-129 20-45 (207)
412 COG0378 HypB Ni2+-binding GTPa 90.2 0.36 7.9E-06 47.2 4.2 48 106-154 13-61 (202)
413 PRK12338 hypothetical protein; 90.2 0.24 5.3E-06 53.6 3.4 24 106-129 4-27 (319)
414 PRK04182 cytidylate kinase; Pr 90.2 0.22 4.8E-06 50.2 3.1 22 108-129 2-23 (180)
415 PRK08116 hypothetical protein; 90.2 0.19 4.1E-06 54.0 2.6 35 107-142 115-149 (268)
416 COG0703 AroK Shikimate kinase 90.2 0.12 2.7E-06 49.9 1.1 23 107-129 3-25 (172)
417 PF10662 PduV-EutP: Ethanolami 90.2 0.23 5E-06 46.6 2.8 24 107-130 2-25 (143)
418 PF01695 IstB_IS21: IstB-like 90.1 0.23 5E-06 49.6 3.0 35 107-142 48-82 (178)
419 KOG1514 Origin recognition com 90.1 7.4 0.00016 46.1 15.1 83 80-164 397-486 (767)
420 PF13086 AAA_11: AAA domain; P 90.1 0.39 8.4E-06 51.0 5.0 51 108-158 19-75 (236)
421 cd02029 PRK_like Phosphoribulo 90.1 0.52 1.1E-05 49.3 5.5 22 108-129 1-22 (277)
422 cd01983 Fer4_NifH The Fer4_Nif 90.1 0.22 4.8E-06 44.0 2.6 22 108-129 1-22 (99)
423 TIGR03878 thermo_KaiC_2 KaiC d 90.1 0.45 9.7E-06 51.0 5.4 39 106-145 36-74 (259)
424 TIGR03574 selen_PSTK L-seryl-t 90.1 0.19 4.1E-06 53.8 2.5 21 109-129 2-22 (249)
425 PLN03046 D-glycerate 3-kinase; 90.0 2.4 5.2E-05 47.5 10.8 26 104-129 210-235 (460)
426 PLN03187 meiotic recombination 90.0 0.65 1.4E-05 51.4 6.6 55 106-161 126-185 (344)
427 PRK13230 nitrogenase reductase 90.0 0.22 4.9E-06 54.3 3.1 40 107-147 2-41 (279)
428 TIGR02238 recomb_DMC1 meiotic 90.0 0.59 1.3E-05 51.3 6.3 55 106-161 96-155 (313)
429 COG4088 Predicted nucleotide k 90.0 0.22 4.8E-06 48.7 2.5 23 107-129 2-24 (261)
430 cd02040 NifH NifH gene encodes 90.0 0.33 7.2E-06 52.8 4.4 43 107-150 2-44 (270)
431 PRK08181 transposase; Validate 90.0 0.19 4.1E-06 53.6 2.4 35 107-142 107-141 (269)
432 PF03029 ATP_bind_1: Conserved 90.0 0.28 6.1E-06 51.5 3.6 31 111-142 1-31 (238)
433 PF00142 Fer4_NifH: 4Fe-4S iro 89.9 0.37 8E-06 49.9 4.3 40 107-147 1-40 (273)
434 CHL00095 clpC Clp protease ATP 89.9 1.2 2.6E-05 56.5 9.8 51 79-129 509-562 (821)
435 cd01672 TMPK Thymidine monopho 89.9 0.46 9.9E-06 48.9 5.2 22 108-129 2-23 (200)
436 PLN02796 D-glycerate 3-kinase 89.9 1.2 2.6E-05 48.8 8.3 26 104-129 98-123 (347)
437 COG4608 AppF ABC-type oligopep 89.9 0.68 1.5E-05 48.3 6.1 54 107-162 40-98 (268)
438 TIGR02173 cyt_kin_arch cytidyl 89.9 0.25 5.4E-06 49.4 3.1 22 108-129 2-23 (171)
439 PRK13232 nifH nitrogenase redu 89.9 0.23 4.9E-06 54.0 3.0 23 107-129 2-24 (273)
440 PTZ00088 adenylate kinase 1; P 89.8 0.23 5E-06 51.7 2.8 22 108-129 8-29 (229)
441 PRK14723 flhF flagellar biosyn 89.8 2.9 6.3E-05 51.1 12.3 73 106-178 185-259 (767)
442 smart00072 GuKc Guanylate kina 89.8 0.3 6.5E-06 49.3 3.6 23 107-129 3-25 (184)
443 TIGR02239 recomb_RAD51 DNA rep 89.8 0.7 1.5E-05 50.9 6.7 54 106-160 96-154 (316)
444 PF03215 Rad17: Rad17 cell cyc 89.8 0.42 9.2E-06 56.1 5.2 59 80-142 20-78 (519)
445 KOG0473 Leucine-rich repeat pr 89.8 0.024 5.2E-07 56.1 -4.1 82 478-571 38-119 (326)
446 cd04139 RalA_RalB RalA/RalB su 89.7 0.3 6.5E-06 48.2 3.5 23 108-130 2-24 (164)
447 PRK04328 hypothetical protein; 89.7 0.71 1.5E-05 49.1 6.5 41 106-147 23-63 (249)
448 KOG0729 26S proteasome regulat 89.7 0.48 1E-05 48.0 4.7 51 79-129 177-234 (435)
449 PRK13236 nitrogenase reductase 89.6 0.29 6.4E-06 53.7 3.6 26 104-129 4-29 (296)
450 PRK03731 aroL shikimate kinase 89.6 0.25 5.4E-06 49.4 2.8 23 107-129 3-25 (171)
451 COG0541 Ffh Signal recognition 89.6 1.7 3.6E-05 48.4 9.2 80 86-167 77-161 (451)
452 COG0464 SpoVK ATPases of the A 89.6 1.6 3.5E-05 52.1 10.2 31 104-135 274-304 (494)
453 PRK14532 adenylate kinase; Pro 89.6 0.25 5.3E-06 50.3 2.8 21 109-129 3-23 (188)
454 PRK08356 hypothetical protein; 89.6 0.31 6.8E-06 49.7 3.6 21 107-127 6-26 (195)
455 PRK09825 idnK D-gluconate kina 89.6 0.27 5.9E-06 49.0 3.0 23 107-129 4-26 (176)
456 PLN00020 ribulose bisphosphate 89.6 0.31 6.7E-06 53.2 3.5 26 104-129 146-171 (413)
457 cd01428 ADK Adenylate kinase ( 89.6 0.24 5.3E-06 50.7 2.8 21 109-129 2-22 (194)
458 TIGR00750 lao LAO/AO transport 89.5 0.42 9E-06 52.6 4.7 26 104-129 32-57 (300)
459 PRK14531 adenylate kinase; Pro 89.5 0.27 5.8E-06 49.6 3.0 23 107-129 3-25 (183)
460 PRK13231 nitrogenase reductase 89.5 0.47 1E-05 51.3 5.1 40 107-148 3-42 (264)
461 PRK09183 transposase/IS protei 89.5 0.28 6.2E-06 52.4 3.3 23 107-129 103-125 (259)
462 PRK10416 signal recognition pa 89.5 0.4 8.8E-06 52.7 4.5 25 105-129 113-137 (318)
463 cd03116 MobB Molybdenum is an 89.4 0.32 7E-06 47.3 3.3 23 107-129 2-24 (159)
464 PRK10867 signal recognition pa 89.4 0.78 1.7E-05 52.5 6.8 74 88-162 79-157 (433)
465 PRK14493 putative bifunctional 89.4 0.43 9.2E-06 51.1 4.5 36 107-144 2-37 (274)
466 TIGR02902 spore_lonB ATP-depen 89.4 0.42 9.2E-06 57.0 4.9 45 79-129 65-109 (531)
467 cd01131 PilT Pilus retraction 89.4 0.42 9.1E-06 48.9 4.3 33 108-141 3-35 (198)
468 COG0470 HolB ATPase involved i 89.3 1.2 2.6E-05 50.0 8.5 80 80-163 2-104 (325)
469 KOG0736 Peroxisome assembly fa 89.3 4.5 9.9E-05 48.2 12.7 174 80-271 402-598 (953)
470 TIGR02030 BchI-ChlI magnesium 89.3 0.49 1.1E-05 52.3 5.0 44 79-128 4-47 (337)
471 PRK13407 bchI magnesium chelat 89.3 0.39 8.4E-06 53.0 4.2 46 78-129 7-52 (334)
472 PRK06835 DNA replication prote 89.3 0.25 5.4E-06 54.5 2.7 36 107-143 184-219 (329)
473 PRK08099 bifunctional DNA-bind 89.2 0.27 5.8E-06 56.0 3.0 25 105-129 218-242 (399)
474 cd04120 Rab12 Rab12 subfamily. 89.2 0.44 9.6E-06 48.8 4.3 23 109-131 3-25 (202)
475 PLN02165 adenylate isopentenyl 89.2 0.27 5.9E-06 53.4 2.9 23 107-129 44-66 (334)
476 KOG0924 mRNA splicing factor A 89.2 3.1 6.7E-05 48.4 11.0 64 88-163 361-427 (1042)
477 smart00173 RAS Ras subfamily o 89.2 0.35 7.5E-06 47.9 3.5 22 108-129 2-23 (164)
478 cd02022 DPCK Dephospho-coenzym 89.2 0.26 5.7E-06 49.5 2.6 21 108-128 1-21 (179)
479 PLN02924 thymidylate kinase 89.2 0.85 1.8E-05 47.3 6.4 33 106-138 16-48 (220)
480 PTZ00494 tuzin-like protein; P 89.1 1.3 2.9E-05 49.0 7.9 81 75-165 367-447 (664)
481 cd01130 VirB11-like_ATPase Typ 89.1 0.51 1.1E-05 47.8 4.7 37 86-129 12-48 (186)
482 KOG0737 AAA+-type ATPase [Post 89.1 4.9 0.00011 43.7 11.9 56 79-135 92-155 (386)
483 PRK06851 hypothetical protein; 89.1 0.34 7.4E-06 53.8 3.6 40 107-146 215-254 (367)
484 KOG0734 AAA+-type ATPase conta 89.1 0.49 1.1E-05 53.2 4.7 51 79-129 304-360 (752)
485 PRK13235 nifH nitrogenase redu 89.1 0.33 7.1E-06 52.9 3.5 39 107-146 2-40 (274)
486 PF01926 MMR_HSR1: 50S ribosom 89.1 0.33 7.1E-06 44.7 3.0 21 109-129 2-22 (116)
487 PRK06067 flagellar accessory p 89.0 0.54 1.2E-05 49.7 5.0 41 105-146 24-64 (234)
488 cd04119 RJL RJL (RabJ-Like) su 89.0 0.38 8.2E-06 47.7 3.7 22 109-130 3-24 (168)
489 PRK14528 adenylate kinase; Pro 89.0 0.31 6.8E-06 49.2 3.0 23 107-129 2-24 (186)
490 PLN03186 DNA repair protein RA 89.0 0.77 1.7E-05 50.9 6.2 54 106-160 123-181 (342)
491 TIGR00041 DTMP_kinase thymidyl 88.9 0.7 1.5E-05 47.3 5.7 24 107-130 4-27 (195)
492 TIGR02016 BchX chlorophyllide 88.9 0.37 8E-06 52.7 3.7 41 107-148 1-41 (296)
493 COG1763 MobB Molybdopterin-gua 88.9 0.31 6.8E-06 47.0 2.8 24 106-129 2-25 (161)
494 PRK08154 anaerobic benzoate ca 88.9 0.47 1E-05 52.3 4.6 25 105-129 132-156 (309)
495 cd01858 NGP_1 NGP-1. Autoanti 88.9 0.6 1.3E-05 45.7 4.9 44 83-129 82-125 (157)
496 COG0465 HflB ATP-dependent Zn 88.9 2.6 5.7E-05 49.7 10.6 53 77-129 148-206 (596)
497 cd04138 H_N_K_Ras_like H-Ras/N 88.9 0.39 8.4E-06 47.3 3.6 23 108-130 3-25 (162)
498 cd01121 Sms Sms (bacterial rad 88.9 0.58 1.3E-05 52.6 5.3 38 107-145 83-120 (372)
499 COG1126 GlnQ ABC-type polar am 88.8 0.59 1.3E-05 46.6 4.6 34 107-142 29-62 (240)
500 PRK06921 hypothetical protein; 88.8 0.4 8.8E-06 51.4 3.9 37 107-143 118-154 (266)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=2.1e-71 Score=668.41 Aligned_cols=543 Identities=30% Similarity=0.464 Sum_probs=441.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhhhccccccccCCCCcccCCCCCCCCCcCCCCCccccchhhHHHHHHHHhcCCCCCCC
Q 039990 25 KLSNEERSKIKAISSRLEELCKRRTVLGLEKIAGGSTHSATVRRRPPTTCLTSEPAVYGRNEDKARILDMVLKNDPSDAA 104 (1217)
Q Consensus 25 ~~~~~~~~~i~~l~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~ 104 (1217)
.++++.+..+..+.+++.++.+....++..................+..+..+..+ ||.++.++++.+.|..++.
T Consensus 105 ~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~d~~---- 179 (889)
T KOG4658|consen 105 GFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSESD-VGLETMLEKLWNRLMEDDV---- 179 (889)
T ss_pred hhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCcccc-ccHHHHHHHHHHHhccCCC----
Confidence 57788888899999999999888888875442211111010011222333444444 9999999999999998642
Q ss_pred CcEEEEEEccCCchHHHHHHHHHhcc--ccCCCCCeEEEEeCCcccHHHHHHHHHHHhhcCCCCCC--ChhHHHHHHHHH
Q 039990 105 NFRVIPLVGMGGIGKTTLAQEVYNDK--LTDDFKPKAWVCVSDDFDILRISKAILESITRSSCGLT--DLNSVQLKLKEA 180 (1217)
Q Consensus 105 ~~~vv~I~G~gGiGKTtLA~~v~~~~--~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~--~~~~~~~~l~~~ 180 (1217)
.+|+|+||||+||||||++++++. ++++||.++||.||++++...++++|++.++....... ..++++..+.+.
T Consensus 180 --~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~ 257 (889)
T KOG4658|consen 180 --GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNL 257 (889)
T ss_pred --CEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHH
Confidence 799999999999999999999986 78999999999999999999999999999987554332 346788888888
Q ss_pred HHhc--------CcCHHHHHHhhcccCCCCCCcEEEEEcCchHHHHh-hCCCceEeccCCChHHHHHHHHHHHhCCCCCC
Q 039990 181 VFKK--------NKSYELWQALKSPFMAGAPGSRIIVTTRSMDVALK-MGSGKNYELKHLSDDDCWSVFLNHAFEGIDTG 251 (1217)
Q Consensus 181 l~~~--------~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~v~~~-~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~ 251 (1217)
+..+ +|+..+|+.+..++|....||||++|||+..|+.. +++...++++.|+.+|||+||++.+|.... .
T Consensus 258 L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~-~ 336 (889)
T KOG4658|consen 258 LEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTL-G 336 (889)
T ss_pred hccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhccccc-c
Confidence 8877 67778899999999999999999999999999988 777889999999999999999999987632 2
Q ss_pred CCCchhhHHHHHHHhccCCchhHHHHHHHhhcCCChhHHHHHHhhccCCCCC-----CCCchHHHHHhhcCCChhHHHHH
Q 039990 252 TQGNFESTRQRVVAKCKGLPLAARALGGLLRSKQRVDEWRAILNSKIWDLED-----EIEIPSVLKLSYHHLPSHLKRCF 326 (1217)
Q Consensus 252 ~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~~~~~~~~~~~~-----~~~i~~~l~~sy~~L~~~~k~~f 326 (1217)
..+.++++|++++++|+|+|||+.++|+.|+.+.+..+|+++.+...+.... ...++.++++||+.||++.|.||
T Consensus 337 ~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CF 416 (889)
T KOG4658|consen 337 SHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCF 416 (889)
T ss_pred ccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHH
Confidence 3344899999999999999999999999999999999999999876554221 22789999999999999999999
Q ss_pred HHhhcCCCCcccChHHHHHHHHHhCCcccccccccHHHHHHHHHHHHHhccCCcccC--CCCCeEEEchhHHHHHHHHhc
Q 039990 327 AYCAILPKDYEFQEEELVLLWIAEGFIQQSKYSKQLEDWGSEYFHDLLSRSMFQKSS--NNESKFVMHDLVHDLAQWASG 404 (1217)
Q Consensus 327 ~~~~~fp~~~~i~~~~li~~w~~~g~i~~~~~~~~~~~~~~~~l~~L~~~sl~~~~~--~~~~~~~mh~lv~~~~~~~~~ 404 (1217)
+|||+||+||.|+++.|+.+||||||+.+.+.+..+++.|.+|+++||+++|++... .+..+|+|||+|||+|.++|+
T Consensus 417 LycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias 496 (889)
T KOG4658|consen 417 LYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIAS 496 (889)
T ss_pred HhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhc
Confidence 999999999999999999999999999987778899999999999999999999865 356789999999999999999
Q ss_pred -----CceEEeecccc--ccccccccCceeEEEEEeccccccccccccccccCccceEccccccccccccccchhhhhhh
Q 039990 405 -----DTCFRLDYEFS--EDRQSKVFEKVRHCSYIRSRRFAVKDKFKFLDEVENLRTFLPIFMEDFFISFCISPMVLSDL 477 (1217)
Q Consensus 405 -----~~~~~~~~~~~--~~~~~~~~~~~r~ls~~~~~~~~~~~~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~ 477 (1217)
++..++....+ .......+..+|+++++.+.. .....-..+++|+||.+..+.. ....+...+
T Consensus 497 ~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~----~~~~~~~~~~~L~tLll~~n~~------~l~~is~~f 566 (889)
T KOG4658|consen 497 DFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKI----EHIAGSSENPKLRTLLLQRNSD------WLLEISGEF 566 (889)
T ss_pred cccccccceEEECCcCccccccccchhheeEEEEeccch----hhccCCCCCCccceEEEeecch------hhhhcCHHH
Confidence 55555544211 112234457899999988762 1223334566899999887642 124566778
Q ss_pred cCCCCcceEEEcCCCC-cccccccccccccChhhhcccccCcEEecccccccccccccccccccccEEeecCCccccccC
Q 039990 478 LPKCKKLRVLSLEKDN-IAEVPISIGCLKCLPEAITSLFNLEILILSYCWCLLKLPSSIGNLVNLHHLDIEGADRLCELP 556 (1217)
Q Consensus 478 ~~~l~~Lr~L~L~~~~-i~~lp~~i~~L~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp 556 (1217)
|..++.||||||++|. +. +||.+|++|.+||||+|+++ .+..+|.++++|++|.+|++..+..+..+|
T Consensus 567 f~~m~~LrVLDLs~~~~l~----------~LP~~I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~ 635 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLS----------KLPSSIGELVHLRYLDLSDT-GISHLPSGLGNLKKLIYLNLEVTGRLESIP 635 (889)
T ss_pred HhhCcceEEEECCCCCccC----------cCChHHhhhhhhhcccccCC-CccccchHHHHHHhhheecccccccccccc
Confidence 9999999999999865 45 45788999999999999998 899999999999999999999997777776
Q ss_pred CCCccCcccccccccccccChhhhHHHHhcCCCCCCeEEE
Q 039990 557 LGMKELKCLRTLTDFINVIDSQEANEAMLRGKKDLEVLKL 596 (1217)
Q Consensus 557 ~~i~~L~~L~~L~~~~n~~~~~~~~~~~l~~l~~L~~L~l 596 (1217)
..+..|++|++|.++.............+..+.+|+.+..
T Consensus 636 ~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 636 GILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred chhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence 6677799999999876554444444455666677776666
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=3.8e-60 Score=608.71 Aligned_cols=468 Identities=20% Similarity=0.246 Sum_probs=306.8
Q ss_pred HHHHHHHHHHHHHHHhhhccccccccCCC----CcccCCCCCCCCCcCCCCCccccchhhHHHHHHHHhcCCCCCCCCcE
Q 039990 32 SKIKAISSRLEELCKRRTVLGLEKIAGGS----THSATVRRRPPTTCLTSEPAVYGRNEDKARILDMVLKNDPSDAANFR 107 (1217)
Q Consensus 32 ~~i~~l~~~l~~i~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~ 107 (1217)
.+++++++.+.++++.... ......... .....+......++..+..++|||++.++++.++|..+. ++++
T Consensus 134 ~~~~~w~~al~~~~~~~g~-~~~~~~~E~~~i~~Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~~----~~~~ 208 (1153)
T PLN03210 134 DEKIQWKQALTDVANILGY-HSQNWPNEAKMIEEIANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLES----EEVR 208 (1153)
T ss_pred hHHHHHHHHHHHHhCcCce-ecCCCCCHHHHHHHHHHHHHHhhccccCcccccccchHHHHHHHHHHHcccc----CceE
Confidence 4688888888888775331 111100000 000000111222233445679999999999998885433 5679
Q ss_pred EEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEe---CCc-----------cc-HHHHHHHHHHHhhcCCC-CCCChh
Q 039990 108 VIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCV---SDD-----------FD-ILRISKAILESITRSSC-GLTDLN 171 (1217)
Q Consensus 108 vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~---~~~-----------~~-~~~~~~~i~~~l~~~~~-~~~~~~ 171 (1217)
+|+||||||+||||||+++|++ +...|++.+|+.. ... +. ...++++++.++..... .....
T Consensus 209 vvgI~G~gGiGKTTLA~~l~~~-l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~- 286 (1153)
T PLN03210 209 MVGIWGSSGIGKTTIARALFSR-LSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHL- 286 (1153)
T ss_pred EEEEEcCCCCchHHHHHHHHHH-HhhcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcccCCH-
Confidence 9999999999999999999997 7889998888742 111 01 12344555555433221 11111
Q ss_pred HHHHHHHHHHHhc--------CcCHHHHHHhhcccCCCCCCcEEEEEcCchHHHHhhCCCceEeccCCChHHHHHHHHHH
Q 039990 172 SVQLKLKEAVFKK--------NKSYELWQALKSPFMAGAPGSRIIVTTRSMDVALKMGSGKNYELKHLSDDDCWSVFLNH 243 (1217)
Q Consensus 172 ~~~~~l~~~l~~~--------~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~v~~~~~~~~~~~l~~l~~~~~~~lf~~~ 243 (1217)
..+++.+.++ +++.+.|+.+.....+.++||+||||||+..++..++..++|+++.++.++||++|+++
T Consensus 287 ---~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~ 363 (1153)
T PLN03210 287 ---GAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRS 363 (1153)
T ss_pred ---HHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHH
Confidence 3345555555 66678899988777777899999999999999987777889999999999999999999
Q ss_pred HhCCCCCCCCCchhhHHHHHHHhccCCchhHHHHHHHhhcCCChhHHHHHHhhccCCCCCCCCchHHHHHhhcCCCh-hH
Q 039990 244 AFEGIDTGTQGNFESTRQRVVAKCKGLPLAARALGGLLRSKQRVDEWRAILNSKIWDLEDEIEIPSVLKLSYHHLPS-HL 322 (1217)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~-~~ 322 (1217)
||+.. .+++++.+++++|+++|+|+||||+++|++|+++ +.++|++++++..... +..|..+|++||+.|++ ..
T Consensus 364 Af~~~--~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~~W~~~l~~L~~~~--~~~I~~~L~~SYd~L~~~~~ 438 (1153)
T PLN03210 364 AFKKN--SPPDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKEDWMDMLPRLRNGL--DGKIEKTLRVSYDGLNNKKD 438 (1153)
T ss_pred hcCCC--CCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHHHHHHHHHHHHhCc--cHHHHHHHHHhhhccCccch
Confidence 99753 2345678899999999999999999999999987 5789999998865433 23699999999999987 59
Q ss_pred HHHHHHhhcCCCCcccChHHHHHHHHHhCCcccccccccHHHHHHHHHHHHHhccCCcccCCCCCeEEEchhHHHHHHHH
Q 039990 323 KRCFAYCAILPKDYEFQEEELVLLWIAEGFIQQSKYSKQLEDWGSEYFHDLLSRSMFQKSSNNESKFVMHDLVHDLAQWA 402 (1217)
Q Consensus 323 k~~f~~~~~fp~~~~i~~~~li~~w~~~g~i~~~~~~~~~~~~~~~~l~~L~~~sl~~~~~~~~~~~~mh~lv~~~~~~~ 402 (1217)
|.||+++|+|+.++.++ .+..|++.+.... +..++.|+++||++... .+++|||++|++++++
T Consensus 439 k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~-----------~~~l~~L~~ksLi~~~~---~~~~MHdLl~~~~r~i 501 (1153)
T PLN03210 439 KAIFRHIACLFNGEKVN---DIKLLLANSDLDV-----------NIGLKNLVDKSLIHVRE---DIVEMHSLLQEMGKEI 501 (1153)
T ss_pred hhhhheehhhcCCCCHH---HHHHHHHhcCCCc-----------hhChHHHHhcCCEEEcC---CeEEhhhHHHHHHHHH
Confidence 99999999999887554 4667877765432 22388999999998754 3799999999999999
Q ss_pred hcCce-------EEeeccc--cccccccccCceeEEEEEeccccccccccccccccCccceEccccccccccccccchhh
Q 039990 403 SGDTC-------FRLDYEF--SEDRQSKVFEKVRHCSYIRSRRFAVKDKFKFLDEVENLRTFLPIFMEDFFISFCISPMV 473 (1217)
Q Consensus 403 ~~~~~-------~~~~~~~--~~~~~~~~~~~~r~ls~~~~~~~~~~~~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~ 473 (1217)
++++. +.+.... ..-.......+++++++..... + ...+
T Consensus 502 ~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~----------------~----------------~~~i 549 (1153)
T PLN03210 502 VRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEI----------------D----------------ELHI 549 (1153)
T ss_pred HHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCcc----------------c----------------eeee
Confidence 87653 1111000 0000011123344444332210 0 0112
Q ss_pred hhhhcCCCCcceEEEcCCCCcccccccccccccChhhhccc-ccCcEEecccccccccccccccccccccEEeecCCccc
Q 039990 474 LSDLLPKCKKLRVLSLEKDNIAEVPISIGCLKCLPEAITSL-FNLEILILSYCWCLLKLPSSIGNLVNLHHLDIEGADRL 552 (1217)
Q Consensus 474 ~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~lp~~i~~L-~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l 552 (1217)
....|.+|++|+.|.+..+....... + -..+|..+..+ .+|++|++.++ .++.+|..+ ...+|++|++.++ .+
T Consensus 550 ~~~aF~~m~~L~~L~~~~~~~~~~~~-~--~~~lp~~~~~lp~~Lr~L~~~~~-~l~~lP~~f-~~~~L~~L~L~~s-~l 623 (1153)
T PLN03210 550 HENAFKGMRNLLFLKFYTKKWDQKKE-V--RWHLPEGFDYLPPKLRLLRWDKY-PLRCMPSNF-RPENLVKLQMQGS-KL 623 (1153)
T ss_pred cHHHHhcCccccEEEEeccccccccc-c--eeecCcchhhcCcccEEEEecCC-CCCCCCCcC-CccCCcEEECcCc-cc
Confidence 23345666666666665443211000 0 00234445444 34677777665 566666655 4566777777666 56
Q ss_pred cccCCCCccCccccccc
Q 039990 553 CELPLGMKELKCLRTLT 569 (1217)
Q Consensus 553 ~~lp~~i~~L~~L~~L~ 569 (1217)
..+|.++..+++|+.|+
T Consensus 624 ~~L~~~~~~l~~Lk~L~ 640 (1153)
T PLN03210 624 EKLWDGVHSLTGLRNID 640 (1153)
T ss_pred cccccccccCCCCCEEE
Confidence 66665555444444443
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=4.9e-38 Score=347.16 Aligned_cols=268 Identities=35% Similarity=0.592 Sum_probs=215.1
Q ss_pred chhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhcc-ccCCCCCeEEEEeCCcccHHHHHHHHHHHhhc
Q 039990 84 RNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDK-LTDDFKPKAWVCVSDDFDILRISKAILESITR 162 (1217)
Q Consensus 84 r~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~-~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~ 162 (1217)
||.++++|.+.|.... ++.++|+|+||||+||||||++++++. ++.+|+.++||.++...+..+++..|+.+++.
T Consensus 1 re~~~~~l~~~L~~~~----~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS----NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTTT----TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCCC----CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 7899999999999854 456999999999999999999999876 88999999999999999999999999999988
Q ss_pred CCC---CCCChhHHHHHHHHHHHhc--------CcCHHHHHHhhcccCCCCCCcEEEEEcCchHHHHhhCC-CceEeccC
Q 039990 163 SSC---GLTDLNSVQLKLKEAVFKK--------NKSYELWQALKSPFMAGAPGSRIIVTTRSMDVALKMGS-GKNYELKH 230 (1217)
Q Consensus 163 ~~~---~~~~~~~~~~~l~~~l~~~--------~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~v~~~~~~-~~~~~l~~ 230 (1217)
... ...+.++....+.+.+.++ +++...|+.+...++....|++||||||+..++..++. ...+++++
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~ 156 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEP 156 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS
T ss_pred cccccccccccccccccchhhhccccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccc
Confidence 744 3466778888999988877 66778898888888877789999999999998876654 57999999
Q ss_pred CChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhccCCchhHHHHHHHhhcCCChhHHHHHHhhccCCCCC----CCC
Q 039990 231 LSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGLPLAARALGGLLRSKQRVDEWRAILNSKIWDLED----EIE 306 (1217)
Q Consensus 231 l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~~~~~~~~~~~~----~~~ 306 (1217)
|+.+||++||.+.++... ....+..++.+++|+++|+|+||||+++|++|+.+.+..+|+++++........ ...
T Consensus 157 L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~ 235 (287)
T PF00931_consen 157 LSEEEALELFKKRAGRKE-SESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRS 235 (287)
T ss_dssp --HHHHHHHHHHHHTSHS-----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHH
T ss_pred cccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999987654 223455677899999999999999999999997766778999988765444322 227
Q ss_pred chHHHHHhhcCCChhHHHHHHHhhcCCCCcccChHHHHHHHHHhCCcccc
Q 039990 307 IPSVLKLSYHHLPSHLKRCFAYCAILPKDYEFQEEELVLLWIAEGFIQQS 356 (1217)
Q Consensus 307 i~~~l~~sy~~L~~~~k~~f~~~~~fp~~~~i~~~~li~~w~~~g~i~~~ 356 (1217)
+..++.+||+.||++.|+||++||+||+++.|+++.++++|+++|||...
T Consensus 236 ~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 236 VFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred ccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 99999999999999999999999999999999999999999999999763
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.9e-34 Score=374.22 Aligned_cols=225 Identities=13% Similarity=0.074 Sum_probs=121.6
Q ss_pred CCccEEeecCCCCCcccccccccccCcceEeeccCCCccccccccCCCCcccEEEEcCCCCCccccccCCCCCCcceEEe
Q 039990 932 VTLKCIQIEDCSNFKVLTSECQLSVAVEELTIDSCSNIESIAERFHDDACLRSIRLSYCKNLKSLPKGLNNLSHLHRRSI 1011 (1217)
Q Consensus 932 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~l 1011 (1217)
.+|+.|++++|+....+|..+..+++|+.|++++|.....+|..+..+++|+.|++++|.....+|..+..+++|+.|++
T Consensus 380 ~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 459 (968)
T PLN00113 380 GNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSL 459 (968)
T ss_pred CCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEEC
Confidence 35555566555555555555555555666666555544455555555555555665555544444444555555555555
Q ss_pred cCCCCCcccCCCCCCCCcceEEEccCcCcccCCCCCCCCCcceEeeccCCCccccCCC-CCCCCCCeEEecCCCCCcccc
Q 039990 1012 QGCHNLVSLPEDALPSNVVDVSIEDCDKLKAPLPTGKLSSLQLLTLIECPGIVFFPEE-GLSTNLTDLEISGDNIYKPLV 1090 (1217)
Q Consensus 1012 ~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~~~~~~~~~ 1090 (1217)
++|.....+|.. ...++|++|++++|.....+|.. ..+++|++|++++|.....++
T Consensus 460 ~~n~~~~~~p~~-----------------------~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 516 (968)
T PLN00113 460 ARNKFFGGLPDS-----------------------FGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIP 516 (968)
T ss_pred cCceeeeecCcc-----------------------cccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCC
Confidence 555444444432 23345555555555443333332 334555666666655554444
Q ss_pred ccccccCCcccceeeccCCCccccccccccCCCCCCcceEeecCCCCCcccCccccCCcccccccccccccCcccCCCCC
Q 039990 1091 KWGFDKFSSLRKHCINRCSDAVSFPEVEKGVILPTSLTLIRISDFPKLERLSSKGFHYLLSLEQLKVSSCPNFTSFPEAG 1170 (1217)
Q Consensus 1091 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~lp~~~ 1170 (1217)
. .+.++++|++|+|++|.....+|. .+..+++|+.|++++|+-...+| ..+.++++|+.|++++|+....+|..+
T Consensus 517 ~-~~~~l~~L~~L~Ls~N~l~~~~p~---~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~l~ls~N~l~~~~p~~~ 591 (968)
T PLN00113 517 D-ELSSCKKLVSLDLSHNQLSGQIPA---SFSEMPVLSQLDLSQNQLSGEIP-KNLGNVESLVQVNISHNHLHGSLPSTG 591 (968)
T ss_pred h-HHcCccCCCEEECCCCcccccCCh---hHhCcccCCEEECCCCcccccCC-hhHhcCcccCEEeccCCcceeeCCCcc
Confidence 3 455666666666666655555554 33445666666666644444555 556666666666666666556666554
Q ss_pred CCCccceEeccCCc
Q 039990 1171 FPSSLLFLDIQGCP 1184 (1217)
Q Consensus 1171 ~~~sL~~L~l~~c~ 1184 (1217)
.+.++....+.+++
T Consensus 592 ~~~~~~~~~~~~n~ 605 (968)
T PLN00113 592 AFLAINASAVAGNI 605 (968)
T ss_pred hhcccChhhhcCCc
Confidence 44444444444444
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.8e-33 Score=365.24 Aligned_cols=206 Identities=21% Similarity=0.155 Sum_probs=133.3
Q ss_pred ccceEeccCCCCcccccCCCCCCCccEEeecCCCCCcccccccccccCcceEeeccCCCccccccccCCCCcccEEEEcC
Q 039990 910 LESLSVQSCPSLTRLWSSGRLPVTLKCIQIEDCSNFKVLTSECQLSVAVEELTIDSCSNIESIAERFHDDACLRSIRLSY 989 (1217)
Q Consensus 910 L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~L~~ 989 (1217)
++.|.+.+++....++.....+++|+.|++++|+....+|..+..+++|+.|++++|.....++..+..+++|+.|++++
T Consensus 382 L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 461 (968)
T PLN00113 382 LFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLAR 461 (968)
T ss_pred CCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcC
Confidence 44444444433223323233446899999999988888888899999999999999987777787777899999999999
Q ss_pred CCCCccccccCCCCCCcceEEecCCCCCcccCCCCCCCCcceEEEccCcCcccCCCCCCCCCcceEeeccCCCccccCCC
Q 039990 990 CKNLKSLPKGLNNLSHLHRRSIQGCHNLVSLPEDALPSNVVDVSIEDCDKLKAPLPTGKLSSLQLLTLIECPGIVFFPEE 1069 (1217)
Q Consensus 990 c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~ 1069 (1217)
|.....+|..+ ..++|+.|++++|.....+|.. +..+++|++|++++|.....+|..
T Consensus 462 n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~----------------------~~~l~~L~~L~Ls~N~l~~~~p~~ 518 (968)
T PLN00113 462 NKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRK----------------------LGSLSELMQLKLSENKLSGEIPDE 518 (968)
T ss_pred ceeeeecCccc-ccccceEEECcCCccCCccChh----------------------hhhhhccCEEECcCCcceeeCChH
Confidence 98877777654 4588999999987654444421 134455555555555444444433
Q ss_pred -CCCCCCCeEEecCCCCCccccccccccCCcccceeeccCCCccccccccccCCCCCCcceEeecCCCCCcccC
Q 039990 1070 -GLSTNLTDLEISGDNIYKPLVKWGFDKFSSLRKHCINRCSDAVSFPEVEKGVILPTSLTLIRISDFPKLERLS 1142 (1217)
Q Consensus 1070 -~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~ 1142 (1217)
..+++|++|++++|.....++. .+..+++|+.|++++|.....+|. .+..+++|+.|++++|+-...+|
T Consensus 519 ~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~---~l~~l~~L~~l~ls~N~l~~~~p 588 (968)
T PLN00113 519 LSSCKKLVSLDLSHNQLSGQIPA-SFSEMPVLSQLDLSQNQLSGEIPK---NLGNVESLVQVNISHNHLHGSLP 588 (968)
T ss_pred HcCccCCCEEECCCCcccccCCh-hHhCcccCCEEECCCCcccccCCh---hHhcCcccCEEeccCCcceeeCC
Confidence 3455555555555555544443 455566666666666655555554 33445566666666655444555
No 6
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.88 E-value=6.4e-25 Score=248.93 Aligned_cols=244 Identities=21% Similarity=0.292 Sum_probs=174.3
Q ss_pred CCCCccEEeecCCCCCcccccccccccCcceEeeccCCCccccccccCCCCcccEEEEcCCCCCccccccCCCCCCcceE
Q 039990 930 LPVTLKCIQIEDCSNFKVLTSECQLSVAVEELTIDSCSNIESIAERFHDDACLRSIRLSYCKNLKSLPKGLNNLSHLHRR 1009 (1217)
Q Consensus 930 ~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L 1009 (1217)
.|.+|+.++++.+ .+..+|+.+..+.+|+.|++.+| .+..+|..+...++|+.|.+.+| .+..+|..+..+.+|++|
T Consensus 239 ~p~nl~~~dis~n-~l~~lp~wi~~~~nle~l~~n~N-~l~~lp~ri~~~~~L~~l~~~~n-el~yip~~le~~~sL~tL 315 (1081)
T KOG0618|consen 239 VPLNLQYLDISHN-NLSNLPEWIGACANLEALNANHN-RLVALPLRISRITSLVSLSAAYN-ELEYIPPFLEGLKSLRTL 315 (1081)
T ss_pred ccccceeeecchh-hhhcchHHHHhcccceEecccch-hHHhhHHHHhhhhhHHHHHhhhh-hhhhCCCcccccceeeee
Confidence 4456666666663 44555566667777777777774 44667777666777777777773 467777777777788888
Q ss_pred EecCCCCCcccCCCCCC---CCcceEEEccCcCcccC-CCCCCCCCcceEeeccCCCc-cccCCCCCCCCCCeEEecCCC
Q 039990 1010 SIQGCHNLVSLPEDALP---SNVVDVSIEDCDKLKAP-LPTGKLSSLQLLTLIECPGI-VFFPEEGLSTNLTDLEISGDN 1084 (1217)
Q Consensus 1010 ~l~~c~~l~~l~~~~~~---~~L~~L~l~~~~~l~~~-~~~~~l~~L~~L~l~~c~~l-~~~~~~~~~~~L~~L~l~~~~ 1084 (1217)
++.. +++.++|...+. .+|+.|..+.+..-..+ .....++.|+.|++.+|..- ..+|.......|+.|++++|.
T Consensus 316 dL~~-N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr 394 (1081)
T KOG0618|consen 316 DLQS-NNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNR 394 (1081)
T ss_pred eehh-ccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccc
Confidence 8877 357777653322 23555555555443332 12256788999999886432 345666778899999999975
Q ss_pred CCccccccccccCCcccceeeccCCCccccccccccCCCCCCcceEeecCCCCCcccCccccCCcccccccccccccCcc
Q 039990 1085 IYKPLVKWGFDKFSSLRKHCINRCSDAVSFPEVEKGVILPTSLTLIRISDFPKLERLSSKGFHYLLSLEQLKVSSCPNFT 1164 (1217)
Q Consensus 1085 ~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~L~~L~l~~c~~l~ 1164 (1217)
.. .+|...+.++..|++|+|++ +.++.+|. ..+.+..|++|...+ |.+..+| .+..++.|+.+|++.| .++
T Consensus 395 L~-~fpas~~~kle~LeeL~LSG-NkL~~Lp~---tva~~~~L~tL~ahs-N~l~~fP--e~~~l~qL~~lDlS~N-~L~ 465 (1081)
T KOG0618|consen 395 LN-SFPASKLRKLEELEELNLSG-NKLTTLPD---TVANLGRLHTLRAHS-NQLLSFP--ELAQLPQLKVLDLSCN-NLS 465 (1081)
T ss_pred cc-cCCHHHHhchHHhHHHhccc-chhhhhhH---HHHhhhhhHHHhhcC-Cceeech--hhhhcCcceEEecccc-hhh
Confidence 54 44555788999999999999 56888886 556789999999988 8999999 6888999999999988 676
Q ss_pred cCC-CCCCC-CccceEeccCCcch
Q 039990 1165 SFP-EAGFP-SSLLFLDIQGCPLL 1186 (1217)
Q Consensus 1165 ~lp-~~~~~-~sL~~L~l~~c~~l 1186 (1217)
.+- ....+ ++|++||++|++++
T Consensus 466 ~~~l~~~~p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 466 EVTLPEALPSPNLKYLDLSGNTRL 489 (1081)
T ss_pred hhhhhhhCCCcccceeeccCCccc
Confidence 653 22456 89999999999864
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.88 E-value=1.3e-26 Score=237.51 Aligned_cols=177 Identities=26% Similarity=0.283 Sum_probs=108.4
Q ss_pred hhhhcCCCCcceEEEcCCCCcccccccccccccChhhhcccccCcEEecccccccccccccccccccccEEeecCCcccc
Q 039990 474 LSDLLPKCKKLRVLSLEKDNIAEVPISIGCLKCLPEAITSLFNLEILILSYCWCLLKLPSSIGNLVNLHHLDIEGADRLC 553 (1217)
Q Consensus 474 ~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~ 553 (1217)
...-+.++..|.||++++|++..+ |.+|+++..++.|+.++| .+.++|+.++.+.+|++|+.+.| .+.
T Consensus 60 l~~dl~nL~~l~vl~~~~n~l~~l----------p~aig~l~~l~~l~vs~n-~ls~lp~~i~s~~~l~~l~~s~n-~~~ 127 (565)
T KOG0472|consen 60 LREDLKNLACLTVLNVHDNKLSQL----------PAAIGELEALKSLNVSHN-KLSELPEQIGSLISLVKLDCSSN-ELK 127 (565)
T ss_pred ccHhhhcccceeEEEeccchhhhC----------CHHHHHHHHHHHhhcccc-hHhhccHHHhhhhhhhhhhcccc-cee
Confidence 334467899999999999998865 467888888999999988 78889998999999999999888 788
Q ss_pred ccCCCCccCcccccccccccccChhhhHHHHhcCCCCCCeEEEEecCCCCchhhHHHHhcccCCCCCccEEEEEeeCCCC
Q 039990 554 ELPLGMKELKCLRTLTDFINVIDSQEANEAMLRGKKDLEVLKLVWSGGPVDELREKNILDMLKPHCNIKRLEIISYGSTR 633 (1217)
Q Consensus 554 ~lp~~i~~L~~L~~L~~~~n~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~ 633 (1217)
.+|.+|+.+..|..|+...|.+..... .+..+.+|..|.+.++.... ..+..-.++.|++|+...+....
T Consensus 128 el~~~i~~~~~l~dl~~~~N~i~slp~---~~~~~~~l~~l~~~~n~l~~-------l~~~~i~m~~L~~ld~~~N~L~t 197 (565)
T KOG0472|consen 128 ELPDSIGRLLDLEDLDATNNQISSLPE---DMVNLSKLSKLDLEGNKLKA-------LPENHIAMKRLKHLDCNSNLLET 197 (565)
T ss_pred ecCchHHHHhhhhhhhccccccccCch---HHHHHHHHHHhhccccchhh-------CCHHHHHHHHHHhcccchhhhhc
Confidence 888889888888888776655443222 12233334444443222111 00111112344444444444444
Q ss_pred CCCCcCCCCcCcccEEEEecCCCCCCCCCCCCcCCCCeeEEc
Q 039990 634 FPSWVGDPSFSNVAVLKLENCDRCTSLPSLGQLCSLKDLTIV 675 (1217)
Q Consensus 634 ~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~l~ 675 (1217)
+|..++. +.+|..|++..+ ++..+|.|+.+..|++|+++
T Consensus 198 lP~~lg~--l~~L~~LyL~~N-ki~~lPef~gcs~L~Elh~g 236 (565)
T KOG0472|consen 198 LPPELGG--LESLELLYLRRN-KIRFLPEFPGCSLLKELHVG 236 (565)
T ss_pred CChhhcc--hhhhHHHHhhhc-ccccCCCCCccHHHHHHHhc
Confidence 4444433 444444444442 33444444444444444444
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.87 E-value=1e-25 Score=230.97 Aligned_cols=462 Identities=20% Similarity=0.221 Sum_probs=255.6
Q ss_pred cccccCccceEccccccccccccccchhhhhhhcCCCCcceEEEcCCCCcccccccccccccChhhhcccccCcEEeccc
Q 039990 445 FLDEVENLRTFLPIFMEDFFISFCISPMVLSDLLPKCKKLRVLSLEKDNIAEVPISIGCLKCLPEAITSLFNLEILILSY 524 (1217)
Q Consensus 445 ~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~lp~~i~~L~~L~~L~L~~ 524 (1217)
.+..+..+-++.+.++. ....+..++++..+..|+.++|++.++| +.++.+.+|+.|+.++
T Consensus 63 dl~nL~~l~vl~~~~n~---------l~~lp~aig~l~~l~~l~vs~n~ls~lp----------~~i~s~~~l~~l~~s~ 123 (565)
T KOG0472|consen 63 DLKNLACLTVLNVHDNK---------LSQLPAAIGELEALKSLNVSHNKLSELP----------EQIGSLISLVKLDCSS 123 (565)
T ss_pred hhhcccceeEEEeccch---------hhhCCHHHHHHHHHHHhhcccchHhhcc----------HHHhhhhhhhhhhccc
Confidence 34445556666655543 2345566888889999999999999766 5566666777777777
Q ss_pred ccccccccccccccccccEEeecCCccccccCCCCccCcccccccccccccChhhhHHHHhcCCCCCCeEEEEecCCCCc
Q 039990 525 CWCLLKLPSSIGNLVNLHHLDIEGADRLCELPLGMKELKCLRTLTDFINVIDSQEANEAMLRGKKDLEVLKLVWSGGPVD 604 (1217)
Q Consensus 525 ~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~~~~n~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 604 (1217)
| .+.++|++|+.+..|+.|+..+| .+..+|.+++++.+|..|.+.+|......... . .++.|++|+..-+
T Consensus 124 n-~~~el~~~i~~~~~l~dl~~~~N-~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~--i-~m~~L~~ld~~~N----- 193 (565)
T KOG0472|consen 124 N-ELKELPDSIGRLLDLEDLDATNN-QISSLPEDMVNLSKLSKLDLEGNKLKALPENH--I-AMKRLKHLDCNSN----- 193 (565)
T ss_pred c-ceeecCchHHHHhhhhhhhcccc-ccccCchHHHHHHHHHHhhccccchhhCCHHH--H-HHHHHHhcccchh-----
Confidence 6 56677777777777777776666 67777777777777766665554433322221 1 2555665555211
Q ss_pred hhhHHHHhcccCCCCCccEEEEEeeCCCCCCCCcCCCCcCcccEEEEecCCCCCCCCC--CCCcCCCCeeEEcCCCCceE
Q 039990 605 ELREKNILDMLKPHCNIKRLEIISYGSTRFPSWVGDPSFSNVAVLKLENCDRCTSLPS--LGQLCSLKDLTIVGMSALKS 682 (1217)
Q Consensus 605 ~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~--l~~l~~L~~L~l~~~~~l~~ 682 (1217)
.-..+...+..+..|.-|++..+.+..+|++-+ ++.|.+|+++. +.++.+|. ...+++|..|++.+ +++++
T Consensus 194 --~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~g---cs~L~Elh~g~-N~i~~lpae~~~~L~~l~vLDLRd-Nklke 266 (565)
T KOG0472|consen 194 --LLETLPPELGGLESLELLYLRRNKIRFLPEFPG---CSLLKELHVGE-NQIEMLPAEHLKHLNSLLVLDLRD-NKLKE 266 (565)
T ss_pred --hhhcCChhhcchhhhHHHHhhhcccccCCCCCc---cHHHHHHHhcc-cHHHhhHHHHhcccccceeeeccc-ccccc
Confidence 112244556667788888888898888886433 67888898877 45677773 56899999999986 77888
Q ss_pred eCccccCCCCcccCcccceeeccccccccccccCCccccccccCccccEEeecCCCCccCCCCCCCC--CccEEEEccCC
Q 039990 683 VGSEIYGEGCSKPFRSLQTLYFEDLQEWEHWEPNRENDEHVQAFSHLRKLSIKRCPKLSGRLPNHLP--SLEEIVIAGCM 760 (1217)
Q Consensus 683 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~p~~l~--~L~~L~l~~c~ 760 (1217)
++.+.+- +.+|.+|+++++. +. .+|..+. .|+.|.+.||+
T Consensus 267 ~Pde~cl------LrsL~rLDlSNN~-------------------------------is-~Lp~sLgnlhL~~L~leGNP 308 (565)
T KOG0472|consen 267 VPDEICL------LRSLERLDLSNND-------------------------------IS-SLPYSLGNLHLKFLALEGNP 308 (565)
T ss_pred CchHHHH------hhhhhhhcccCCc-------------------------------cc-cCCcccccceeeehhhcCCc
Confidence 7776653 4555555555532 22 3333221 44555555654
Q ss_pred Cccc---cCCC--CCcccEEEE-ccCCCccccCCCCCCCccceeeccccccccccccccccccceeeeccccCCCccccc
Q 039990 761 HLAV---SLPS--LPALCTMEI-DGCKRLVCDGPSESKSLNEMALCNISKFENWSMENLVRFGFYSVDTSKDCNALTSLT 834 (1217)
Q Consensus 761 ~l~~---~~~~--l~~L~~L~l-~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~l~~c~~l~~l~ 834 (1217)
.-+. .+.. -.-|++|.- ..|........... ...+ ...+. +|
T Consensus 309 lrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e---~~~t------~~~~~-----------------------~~ 356 (565)
T KOG0472|consen 309 LRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTE---TAMT------LPSES-----------------------FP 356 (565)
T ss_pred hHHHHHHHHcccHHHHHHHHHHhhccCCCCCCccccc---ccCC------CCCCc-----------------------cc
Confidence 3221 1100 001111110 00111100000000 0000 00000 01
Q ss_pred cccccCCCcccEEEEeccCCcccccccCCC----CCccEEEecccCcccccccCCCCCCCCCcccccccCCCCCcccccc
Q 039990 835 DGMIHNNVRLEVLRIIGCHSLKSIAREHLP----SSLKEIELEYCEIQQCVLDDGENSCASPSVLEKNINNSSSSTYLDL 910 (1217)
Q Consensus 835 ~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~----~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 910 (1217)
......+.+.|++++ ..++.+|...|- .-+..++++.|..
T Consensus 357 --~~~~~i~tkiL~~s~-~qlt~VPdEVfea~~~~~Vt~VnfskNqL--------------------------------- 400 (565)
T KOG0472|consen 357 --DIYAIITTKILDVSD-KQLTLVPDEVFEAAKSEIVTSVNFSKNQL--------------------------------- 400 (565)
T ss_pred --chhhhhhhhhhcccc-cccccCCHHHHHHhhhcceEEEecccchH---------------------------------
Confidence 123345566666666 455555543322 1123333333321
Q ss_pred cceEeccCCCCcccccCCCCCCCccEEeecCCCCCcccccccccccCcceEeeccCCCccccccccCCCCcccEEEEcCC
Q 039990 911 ESLSVQSCPSLTRLWSSGRLPVTLKCIQIEDCSNFKVLTSECQLSVAVEELTIDSCSNIESIAERFHDDACLRSIRLSYC 990 (1217)
Q Consensus 911 ~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~L~~c 990 (1217)
..+|........+.+.-+..++....+|..+..++.|..|++++ +-+..+|..++.+..|+.|+++.|
T Consensus 401 -----------~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~N-N~Ln~LP~e~~~lv~Lq~LnlS~N 468 (565)
T KOG0472|consen 401 -----------CELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSN-NLLNDLPEEMGSLVRLQTLNLSFN 468 (565)
T ss_pred -----------hhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeeccc-chhhhcchhhhhhhhhheeccccc
Confidence 11111000111222223334455666666667777777777776 356777777777777777777774
Q ss_pred CCCccccccCCCCCCcceEEecCCCCCcccCCCCCC--CCcceEEEccCcCcccCCCCCCCCCcceEeeccCCC
Q 039990 991 KNLKSLPKGLNNLSHLHRRSIQGCHNLVSLPEDALP--SNVVDVSIEDCDKLKAPLPTGKLSSLQLLTLIECPG 1062 (1217)
Q Consensus 991 ~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~--~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~c~~ 1062 (1217)
....+|..+..+..|+.+-.++ ++++.++..++. .+|.+|++.++.....|...++|++|++|.+++|+.
T Consensus 469 -rFr~lP~~~y~lq~lEtllas~-nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 469 -RFRMLPECLYELQTLETLLASN-NQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPF 540 (565)
T ss_pred -ccccchHHHhhHHHHHHHHhcc-ccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCcc
Confidence 5666776666666666654444 567766654322 456666666665555555556666666666666553
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.87 E-value=5.8e-23 Score=220.47 Aligned_cols=355 Identities=16% Similarity=0.187 Sum_probs=234.2
Q ss_pred CccEEEEccCCCcc---ccCCCCCcccEEEEccCCCccccCCCCC-CCccceeeccccccccccccccccccceeeeccc
Q 039990 750 SLEEIVIAGCMHLA---VSLPSLPALCTMEIDGCKRLVCDGPSES-KSLNEMALCNISKFENWSMENLVRFGFYSVDTSK 825 (1217)
Q Consensus 750 ~L~~L~l~~c~~l~---~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~l~ 825 (1217)
.-+.|++++|..-. ..+-++|+|+++++..+.......+... ..++.|++.+
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~------------------------ 134 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRH------------------------ 134 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeec------------------------
Confidence 34556666663221 2344577777777766544433333322 2355555554
Q ss_pred cCCCccccccccccCCCcccEEEEeccCCcccccccCCC--CCccEEEecccCcccccccCCCCCCCCCcccccccCCCC
Q 039990 826 DCNALTSLTDGMIHNNVRLEVLRIIGCHSLKSIAREHLP--SSLKEIELEYCEIQQCVLDDGENSCASPSVLEKNINNSS 903 (1217)
Q Consensus 826 ~c~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~--~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 903 (1217)
|.+.++....++.++.|+.|+++. +.+..++...+| .++++|++++|...
T Consensus 135 --N~I~sv~se~L~~l~alrslDLSr-N~is~i~~~sfp~~~ni~~L~La~N~It------------------------- 186 (873)
T KOG4194|consen 135 --NLISSVTSEELSALPALRSLDLSR-NLISEIPKPSFPAKVNIKKLNLASNRIT------------------------- 186 (873)
T ss_pred --cccccccHHHHHhHhhhhhhhhhh-chhhcccCCCCCCCCCceEEeecccccc-------------------------
Confidence 566666666677788888888887 456677666666 57788888777632
Q ss_pred CcccccccceEeccCCCCcccccCCCCCCCccEEeecCCCCCcccccccccccCcceEeeccCCCcccc-ccccCCCCcc
Q 039990 904 SSTYLDLESLSVQSCPSLTRLWSSGRLPVTLKCIQIEDCSNFKVLTSECQLSVAVEELTIDSCSNIESI-AERFHDDACL 982 (1217)
Q Consensus 904 ~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l-~~~~~~l~~L 982 (1217)
.+...... .+.+|..|.++.|...+.-+..|.+++.|+.|++..|. ++.+ +..|.++++|
T Consensus 187 --------~l~~~~F~----------~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~-irive~ltFqgL~Sl 247 (873)
T KOG4194|consen 187 --------TLETGHFD----------SLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR-IRIVEGLTFQGLPSL 247 (873)
T ss_pred --------cccccccc----------ccchheeeecccCcccccCHHHhhhcchhhhhhccccc-eeeehhhhhcCchhh
Confidence 22211111 11255666666654443333455567777777777743 3333 5566667777
Q ss_pred cEEEEcCCCCCccc-cccCCCCCCcceEEecCCCCCcccCCCCCC--CCcceEEEccCcCcccC-CCCCCCCCcceEeec
Q 039990 983 RSIRLSYCKNLKSL-PKGLNNLSHLHRRSIQGCHNLVSLPEDALP--SNVVDVSIEDCDKLKAP-LPTGKLSSLQLLTLI 1058 (1217)
Q Consensus 983 ~~L~L~~c~~l~~l-~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~--~~L~~L~l~~~~~l~~~-~~~~~l~~L~~L~l~ 1058 (1217)
+.|.+..|+ +..+ ...|..+.++++|++..| +++.+.++.+. ++|+.|++++|..-... ..-..+++|++|+++
T Consensus 248 ~nlklqrN~-I~kL~DG~Fy~l~kme~l~L~~N-~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs 325 (873)
T KOG4194|consen 248 QNLKLQRND-ISKLDDGAFYGLEKMEHLNLETN-RLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLS 325 (873)
T ss_pred hhhhhhhcC-cccccCcceeeecccceeecccc-hhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecc
Confidence 777777743 3333 334566777777777773 56666554433 67777777776654441 122567889999998
Q ss_pred cCCCccccCCCC--CCCCCCeEEecCCCCCccccccccccCCcccceeeccCCCccccccccccCCCCCCcceEeecCCC
Q 039990 1059 ECPGIVFFPEEG--LSTNLTDLEISGDNIYKPLVKWGFDKFSSLRKHCINRCSDAVSFPEVEKGVILPTSLTLIRISDFP 1136 (1217)
Q Consensus 1059 ~c~~l~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~ 1136 (1217)
+ +.++.++.++ .+..|++|.++.|... .+.+.+|..+++|++|+|++|...+.+.+....|..+++|+.|++.+ |
T Consensus 326 ~-N~i~~l~~~sf~~L~~Le~LnLs~Nsi~-~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g-N 402 (873)
T KOG4194|consen 326 S-NRITRLDEGSFRVLSQLEELNLSHNSID-HLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG-N 402 (873)
T ss_pred c-cccccCChhHHHHHHHhhhhcccccchH-HHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecC-c
Confidence 7 4677777663 4888999999997654 44455789999999999999888777777666788899999999999 9
Q ss_pred CCcccCccccCCcccccccccccccCcccCCCCCC-CCccceEecc
Q 039990 1137 KLERLSSKGFHYLLSLEQLKVSSCPNFTSFPEAGF-PSSLLFLDIQ 1181 (1217)
Q Consensus 1137 ~l~~l~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~-~~sL~~L~l~ 1181 (1217)
++++||.++|.+|++|++|++.+| -|.++-...+ +-.|+.|-+.
T Consensus 403 qlk~I~krAfsgl~~LE~LdL~~N-aiaSIq~nAFe~m~Lk~Lv~n 447 (873)
T KOG4194|consen 403 QLKSIPKRAFSGLEALEHLDLGDN-AIASIQPNAFEPMELKELVMN 447 (873)
T ss_pred eeeecchhhhccCcccceecCCCC-cceeecccccccchhhhhhhc
Confidence 999999999999999999999999 5666644322 3467766544
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.87 E-value=2.6e-21 Score=250.03 Aligned_cols=264 Identities=21% Similarity=0.305 Sum_probs=133.8
Q ss_pred ccccceEeccCCCCcccccCCCCCCCccEEeecCCCCCcccccccccccCcceEeeccCCCccccccccCCCCcccEEEE
Q 039990 908 LDLESLSVQSCPSLTRLWSSGRLPVTLKCIQIEDCSNFKVLTSECQLSVAVEELTIDSCSNIESIAERFHDDACLRSIRL 987 (1217)
Q Consensus 908 ~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~L 987 (1217)
++|+.++++++..+..++ .....++|+.|++++|..+..+|..+.++++|+.|++++|..++.+|... .+++|+.|++
T Consensus 634 ~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~L 711 (1153)
T PLN03210 634 TGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNL 711 (1153)
T ss_pred CCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeC
Confidence 345555555555555542 23334456666666666555555555556666666666666565555543 3556666666
Q ss_pred cCCCCCccccccCCCCCCcceEEecCCCCCcccCCCCCCCCcceEEEccCcCcccC--------CCCCCCCCcceEeecc
Q 039990 988 SYCKNLKSLPKGLNNLSHLHRRSIQGCHNLVSLPEDALPSNVVDVSIEDCDKLKAP--------LPTGKLSSLQLLTLIE 1059 (1217)
Q Consensus 988 ~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~--------~~~~~l~~L~~L~l~~ 1059 (1217)
++|..+..+|.. .++|+.|+++++. ++.+|.....++|..|++.+|...... .....+++|++|++++
T Consensus 712 sgc~~L~~~p~~---~~nL~~L~L~~n~-i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~ 787 (1153)
T PLN03210 712 SGCSRLKSFPDI---STNISWLDLDETA-IEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSD 787 (1153)
T ss_pred CCCCCccccccc---cCCcCeeecCCCc-cccccccccccccccccccccchhhccccccccchhhhhccccchheeCCC
Confidence 666555555432 3455555555532 445544332344555554443211110 0011234555555555
Q ss_pred CCCccccCCC-CCCCCCCeEEecCCCCCccccccccccCCcccceeeccCCCccccccccccCCCCCCcceEeecCCCCC
Q 039990 1060 CPGIVFFPEE-GLSTNLTDLEISGDNIYKPLVKWGFDKFSSLRKHCINRCSDAVSFPEVEKGVILPTSLTLIRISDFPKL 1138 (1217)
Q Consensus 1060 c~~l~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l 1138 (1217)
|+.+..+|.. +.+++|+.|++++|..++.+|.. .++++|+.|++++|..+..+|. .+++|+.|++++ +.+
T Consensus 788 n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~--~~L~sL~~L~Ls~c~~L~~~p~------~~~nL~~L~Ls~-n~i 858 (1153)
T PLN03210 788 IPSLVELPSSIQNLHKLEHLEIENCINLETLPTG--INLESLESLDLSGCSRLRTFPD------ISTNISDLNLSR-TGI 858 (1153)
T ss_pred CCCccccChhhhCCCCCCEEECCCCCCcCeeCCC--CCccccCEEECCCCCccccccc------cccccCEeECCC-CCC
Confidence 5555555443 34555555555555555444432 1455555555555555555543 234555555555 455
Q ss_pred cccCccccCCcccccccccccccCcccCCCC-CCCCccceEeccCCcchH
Q 039990 1139 ERLSSKGFHYLLSLEQLKVSSCPNFTSFPEA-GFPSSLLFLDIQGCPLLE 1187 (1217)
Q Consensus 1139 ~~l~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~~sL~~L~l~~c~~l~ 1187 (1217)
+.+| .++..+++|++|++++|++++.+|.. ..+++|+.+++++|+.|.
T Consensus 859 ~~iP-~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~ 907 (1153)
T PLN03210 859 EEVP-WWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALT 907 (1153)
T ss_pred ccCh-HHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccc
Confidence 5555 34555555555555555555555443 234455555555555444
No 11
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.84 E-value=7.4e-22 Score=212.08 Aligned_cols=360 Identities=22% Similarity=0.255 Sum_probs=215.6
Q ss_pred cceEEEcCCCCcccccccccccccChhhhcccccCcEEecccccccccccccccccccccEEeecCCccccccCC-CCcc
Q 039990 483 KLRVLSLEKDNIAEVPISIGCLKCLPEAITSLFNLEILILSYCWCLLKLPSSIGNLVNLHHLDIEGADRLCELPL-GMKE 561 (1217)
Q Consensus 483 ~Lr~L~L~~~~i~~lp~~i~~L~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~-~i~~ 561 (1217)
.-+.||+++|++..+. +..|.+|.||+.+++..| .+..+|...+...+|++|+|.+| .+..+.. .+.-
T Consensus 79 ~t~~LdlsnNkl~~id---------~~~f~nl~nLq~v~l~~N-~Lt~IP~f~~~sghl~~L~L~~N-~I~sv~se~L~~ 147 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHID---------FEFFYNLPNLQEVNLNKN-ELTRIPRFGHESGHLEKLDLRHN-LISSVTSEELSA 147 (873)
T ss_pred ceeeeeccccccccCc---------HHHHhcCCcceeeeeccc-hhhhcccccccccceeEEeeecc-ccccccHHHHHh
Confidence 4456788887777654 456777778888888777 67777776666667788887777 5655542 3555
Q ss_pred CcccccccccccccChhhhHHHHhcCCCCCCeEEEEecCCCCchhhHHHHhcccCCCCCccEEEEEeeCCCCCCCCcCCC
Q 039990 562 LKCLRTLTDFINVIDSQEANEAMLRGKKDLEVLKLVWSGGPVDELREKNILDMLKPHCNIKRLEIISYGSTRFPSWVGDP 641 (1217)
Q Consensus 562 L~~L~~L~~~~n~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~ 641 (1217)
+..|+.|++..|.++... ...+..-.++++|++++|.+..+...-++
T Consensus 148 l~alrslDLSrN~is~i~--------------------------------~~sfp~~~ni~~L~La~N~It~l~~~~F~- 194 (873)
T KOG4194|consen 148 LPALRSLDLSRNLISEIP--------------------------------KPSFPAKVNIKKLNLASNRITTLETGHFD- 194 (873)
T ss_pred Hhhhhhhhhhhchhhccc--------------------------------CCCCCCCCCceEEeecccccccccccccc-
Confidence 556666665554433211 11222335777777777777766544332
Q ss_pred CcCcccEEEEecCCCCCCCC--CCCCcCCCCeeEEcCCCCceEe-CccccCCCCcccCcccceeeccccccccccccCCc
Q 039990 642 SFSNVAVLKLENCDRCTSLP--SLGQLCSLKDLTIVGMSALKSV-GSEIYGEGCSKPFRSLQTLYFEDLQEWEHWEPNRE 718 (1217)
Q Consensus 642 ~l~~L~~L~L~~~~~~~~l~--~l~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 718 (1217)
.+.+|..|.|++| .++.+| .|.++++|+.|+|.. +.++.+ +..|.| +++|+.|.+..+.. ...
T Consensus 195 ~lnsL~tlkLsrN-rittLp~r~Fk~L~~L~~LdLnr-N~irive~ltFqg------L~Sl~nlklqrN~I------~kL 260 (873)
T KOG4194|consen 195 SLNSLLTLKLSRN-RITTLPQRSFKRLPKLESLDLNR-NRIRIVEGLTFQG------LPSLQNLKLQRNDI------SKL 260 (873)
T ss_pred ccchheeeecccC-cccccCHHHhhhcchhhhhhccc-cceeeehhhhhcC------chhhhhhhhhhcCc------ccc
Confidence 3678888888884 567777 477788888888875 566655 333333 77777777766542 111
Q ss_pred cccccccCccccEEeecCCCCccCCCC----CCCCCccEEEEccCCCccccCCCCCcccEEEEccCCCccccCCCCCCCc
Q 039990 719 NDEHVQAFSHLRKLSIKRCPKLSGRLP----NHLPSLEEIVIAGCMHLAVSLPSLPALCTMEIDGCKRLVCDGPSESKSL 794 (1217)
Q Consensus 719 ~~~~~~~~~~L~~L~l~~c~~L~~~~p----~~l~~L~~L~l~~c~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L 794 (1217)
....+-.+.++++|++..+ ++. .+- ..++.|+.|+++.|..- .+...+....++|
T Consensus 261 ~DG~Fy~l~kme~l~L~~N-~l~-~vn~g~lfgLt~L~~L~lS~NaI~-------------------rih~d~WsftqkL 319 (873)
T KOG4194|consen 261 DDGAFYGLEKMEHLNLETN-RLQ-AVNEGWLFGLTSLEQLDLSYNAIQ-------------------RIHIDSWSFTQKL 319 (873)
T ss_pred cCcceeeecccceeecccc-hhh-hhhcccccccchhhhhccchhhhh-------------------eeecchhhhcccc
Confidence 1112224566666666655 332 111 13455555555554221 1112233444556
Q ss_pred cceeeccccccccccccccccccceeeeccccCCCccccccccccCCCcccEEEEeccCCcccccccC--CCCCccEEEe
Q 039990 795 NEMALCNISKFENWSMENLVRFGFYSVDTSKDCNALTSLTDGMIHNNVRLEVLRIIGCHSLKSIAREH--LPSSLKEIEL 872 (1217)
Q Consensus 795 ~~L~l~~~~~l~~~~~~~~~~~~~l~~L~l~~c~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~i~~~~--~~~~L~~L~l 872 (1217)
+.|++++ |.++.++++.|..+..|++|++++| .+..+.... ..++|++|++
T Consensus 320 ~~LdLs~--------------------------N~i~~l~~~sf~~L~~Le~LnLs~N-si~~l~e~af~~lssL~~LdL 372 (873)
T KOG4194|consen 320 KELDLSS--------------------------NRITRLDEGSFRVLSQLEELNLSHN-SIDHLAEGAFVGLSSLHKLDL 372 (873)
T ss_pred eeEeccc--------------------------cccccCChhHHHHHHHhhhhccccc-chHHHHhhHHHHhhhhhhhcC
Confidence 6666654 6777777777778888888888874 455554433 3467777777
Q ss_pred cccCcccccccCCCCCCCCCcccccccCCCCCcccccccceEeccCCCCcccccCCCCCCCccEEeecCCCCCccccccc
Q 039990 873 EYCEIQQCVLDDGENSCASPSVLEKNINNSSSSTYLDLESLSVQSCPSLTRLWSSGRLPVTLKCIQIEDCSNFKVLTSEC 952 (1217)
Q Consensus 873 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 952 (1217)
.+|.....+..+. ..+..+++|++|++.+|+.-......|
T Consensus 373 r~N~ls~~IEDaa----------------------------------------~~f~gl~~LrkL~l~gNqlk~I~krAf 412 (873)
T KOG4194|consen 373 RSNELSWCIEDAA----------------------------------------VAFNGLPSLRKLRLTGNQLKSIPKRAF 412 (873)
T ss_pred cCCeEEEEEecch----------------------------------------hhhccchhhhheeecCceeeecchhhh
Confidence 7766433222110 111123467777777754433334567
Q ss_pred ccccCcceEeeccCCCccccccccCCCCcccEEEEcC
Q 039990 953 QLSVAVEELTIDSCSNIESIAERFHDDACLRSIRLSY 989 (1217)
Q Consensus 953 ~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~L~~ 989 (1217)
.++.+|++|++.+|.....-+..|..+ .|+.|.+..
T Consensus 413 sgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 413 SGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred ccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence 788888888888876555556666544 777777654
No 12
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.84 E-value=6.6e-23 Score=221.05 Aligned_cols=370 Identities=16% Similarity=0.224 Sum_probs=226.9
Q ss_pred CCCcceEEEcCCCCcccccccccccccChhhhcccccCcEEecccccccccccccccccccccEEeecCCccccccCCCC
Q 039990 480 KCKKLRVLSLEKDNIAEVPISIGCLKCLPEAITSLFNLEILILSYCWCLLKLPSSIGNLVNLHHLDIEGADRLCELPLGM 559 (1217)
Q Consensus 480 ~l~~Lr~L~L~~~~i~~lp~~i~~L~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i 559 (1217)
-++..|-.|+++|.++.- .+|.++..++.++-|.|..+ .+..+|++++.|.+|+||.+++| ++..+-..+
T Consensus 5 VLpFVrGvDfsgNDFsg~--------~FP~~v~qMt~~~WLkLnrt-~L~~vPeEL~~lqkLEHLs~~HN-~L~~vhGEL 74 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGD--------RFPHDVEQMTQMTWLKLNRT-KLEQVPEELSRLQKLEHLSMAHN-QLISVHGEL 74 (1255)
T ss_pred ccceeecccccCCcCCCC--------cCchhHHHhhheeEEEechh-hhhhChHHHHHHhhhhhhhhhhh-hhHhhhhhh
Confidence 456778889999987642 46788999999999999997 89999999999999999999999 777776667
Q ss_pred ccCcccccccccccccChhhhHHHHhcCCCCCCeEEEEecCCCCchhhHHHHhcccCCCCCccEEEEEeeCCCCCCCCcC
Q 039990 560 KELKCLRTLTDFINVIDSQEANEAMLRGKKDLEVLKLVWSGGPVDELREKNILDMLKPHCNIKRLEIISYGSTRFPSWVG 639 (1217)
Q Consensus 560 ~~L~~L~~L~~~~n~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~ 639 (1217)
+.|+.|+.+....|... -..+|..++
T Consensus 75 s~Lp~LRsv~~R~N~LK------------------------------------------------------nsGiP~diF 100 (1255)
T KOG0444|consen 75 SDLPRLRSVIVRDNNLK------------------------------------------------------NSGIPTDIF 100 (1255)
T ss_pred ccchhhHHHhhhccccc------------------------------------------------------cCCCCchhc
Confidence 77777776654332211 123344443
Q ss_pred CCCcCcccEEEEecCCCCCCCC-CCCCcCCCCeeEEcCCCCceEeCccccCCCCcccCcccceeeccccccccccccCCc
Q 039990 640 DPSFSNVAVLKLENCDRCTSLP-SLGQLCSLKDLTIVGMSALKSVGSEIYGEGCSKPFRSLQTLYFEDLQEWEHWEPNRE 718 (1217)
Q Consensus 640 ~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 718 (1217)
. +..|+.|+|+.+ .++..| .+..-.++-.|+|++ ++++.|+...+.. +.-|-.|+++
T Consensus 101 ~--l~dLt~lDLShN-qL~EvP~~LE~AKn~iVLNLS~-N~IetIPn~lfin-----LtDLLfLDLS------------- 158 (1255)
T KOG0444|consen 101 R--LKDLTILDLSHN-QLREVPTNLEYAKNSIVLNLSY-NNIETIPNSLFIN-----LTDLLFLDLS------------- 158 (1255)
T ss_pred c--cccceeeecchh-hhhhcchhhhhhcCcEEEEccc-CccccCCchHHHh-----hHhHhhhccc-------------
Confidence 2 556666666663 344455 355556666666663 5566665544331 2223333333
Q ss_pred cccccccCccccEEeecCCCCccCCCCC---CCCCccEEEEccCCCccccCCCCCcccEEEEccCCCccccCCCCCCCcc
Q 039990 719 NDEHVQAFSHLRKLSIKRCPKLSGRLPN---HLPSLEEIVIAGCMHLAVSLPSLPALCTMEIDGCKRLVCDGPSESKSLN 795 (1217)
Q Consensus 719 ~~~~~~~~~~L~~L~l~~c~~L~~~~p~---~l~~L~~L~l~~c~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~ 795 (1217)
++ +|. .+|+ .+..|++|.+++|+...+.+..+|+++.|.
T Consensus 159 -----------------~N-rLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~------------------- 200 (1255)
T KOG0444|consen 159 -----------------NN-RLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLS------------------- 200 (1255)
T ss_pred -----------------cc-hhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhh-------------------
Confidence 33 332 3333 223444444444444333333333222111
Q ss_pred ceeeccccccccccccccccccceeeeccccCCCccccccccccCCCcccEEEEeccCCcccccccCCCCCccEEEeccc
Q 039990 796 EMALCNISKFENWSMENLVRFGFYSVDTSKDCNALTSLTDGMIHNNVRLEVLRIIGCHSLKSIAREHLPSSLKEIELEYC 875 (1217)
Q Consensus 796 ~L~l~~~~~l~~~~~~~~~~~~~l~~L~l~~c~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~L~~L~l~~~ 875 (1217)
.|.+++-...-.-.+..+..+.+|..+++ .||.+..+|+. +-++++|+.|++++|. ++.+....
T Consensus 201 vLhms~TqRTl~N~Ptsld~l~NL~dvDl-S~N~Lp~vPec-ly~l~~LrrLNLS~N~-iteL~~~~------------- 264 (1255)
T KOG0444|consen 201 VLHMSNTQRTLDNIPTSLDDLHNLRDVDL-SENNLPIVPEC-LYKLRNLRRLNLSGNK-ITELNMTE------------- 264 (1255)
T ss_pred hhhcccccchhhcCCCchhhhhhhhhccc-cccCCCcchHH-HhhhhhhheeccCcCc-eeeeeccH-------------
Confidence 11111100000000111122222222332 24677777766 6677777777777743 32221100
Q ss_pred CcccccccCCCCCCCCCcccccccCCCCCcccccccceEeccCCCCcccccCCCCCCCccEEeecCCCC-Cccccccccc
Q 039990 876 EIQQCVLDDGENSCASPSVLEKNINNSSSSTYLDLESLSVQSCPSLTRLWSSGRLPVTLKCIQIEDCSN-FKVLTSECQL 954 (1217)
Q Consensus 876 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~-l~~~~~~~~~ 954 (1217)
....+++.|+++. +.++.+|.....++.|+.|.+.+|.. +.-+|+.++.
T Consensus 265 -----------------------------~~W~~lEtLNlSr-NQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGK 314 (1255)
T KOG0444|consen 265 -----------------------------GEWENLETLNLSR-NQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGK 314 (1255)
T ss_pred -----------------------------HHHhhhhhhcccc-chhccchHHHhhhHHHHHHHhccCcccccCCccchhh
Confidence 0012255555554 34555555555566788888877654 4568999999
Q ss_pred ccCcceEeeccCCCccccccccCCCCcccEEEEcCCCCCccccccCCCCCCcceEEecCCCCCcccC
Q 039990 955 SVAVEELTIDSCSNIESIAERFHDDACLRSIRLSYCKNLKSLPKGLNNLSHLHRRSIQGCHNLVSLP 1021 (1217)
Q Consensus 955 l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~ 1021 (1217)
+..|+.+..++ +.++-+|+++++|..|+.|.|+. +.+-.+|+++.-++.|+.|+++.|+++..-|
T Consensus 315 L~~Levf~aan-N~LElVPEglcRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 315 LIQLEVFHAAN-NKLELVPEGLCRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred hhhhHHHHhhc-cccccCchhhhhhHHHHHhcccc-cceeechhhhhhcCCcceeeccCCcCccCCC
Confidence 99999999887 57899999999999999999987 5678899999999999999999999887554
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.79 E-value=3e-21 Score=219.47 Aligned_cols=264 Identities=17% Similarity=0.191 Sum_probs=196.3
Q ss_pred CccEEeecCCCCCcccccccccccCcceEeeccCCCccccccccCCCCcccEEEEcCCCCCccccccCCCCCCcceEEec
Q 039990 933 TLKCIQIEDCSNFKVLTSECQLSVAVEELTIDSCSNIESIAERFHDDACLRSIRLSYCKNLKSLPKGLNNLSHLHRRSIQ 1012 (1217)
Q Consensus 933 ~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~l~ 1012 (1217)
+|+.|+.+.|...+..+ .....+|++++++++ .+..+|.++..+.+|+.++..+ +.+..+|..+...++|+.|.+.
T Consensus 220 ~l~~L~a~~n~l~~~~~--~p~p~nl~~~dis~n-~l~~lp~wi~~~~nle~l~~n~-N~l~~lp~ri~~~~~L~~l~~~ 295 (1081)
T KOG0618|consen 220 SLTALYADHNPLTTLDV--HPVPLNLQYLDISHN-NLSNLPEWIGACANLEALNANH-NRLVALPLRISRITSLVSLSAA 295 (1081)
T ss_pred chheeeeccCcceeecc--ccccccceeeecchh-hhhcchHHHHhcccceEecccc-hhHHhhHHHHhhhhhHHHHHhh
Confidence 34444444444432211 223568999999994 6788898888899999999999 4568899999999999999999
Q ss_pred CCCCCcccCCCCC-CCCcceEEEccCcCcccCCCC-CCC-CCcceEeeccCCCccccCCC--CCCCCCCeEEecCCCCCc
Q 039990 1013 GCHNLVSLPEDAL-PSNVVDVSIEDCDKLKAPLPT-GKL-SSLQLLTLIECPGIVFFPEE--GLSTNLTDLEISGDNIYK 1087 (1217)
Q Consensus 1013 ~c~~l~~l~~~~~-~~~L~~L~l~~~~~l~~~~~~-~~l-~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~~~~~~ 1087 (1217)
.| .++.+|.-.- ..+|++|++..+.....|..+ ..+ .+|..|..+. ..+...|.. ...+.|+.|++.+|...+
T Consensus 296 ~n-el~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~-n~l~~lp~~~e~~~~~Lq~LylanN~Ltd 373 (1081)
T KOG0618|consen 296 YN-ELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSS-NKLSTLPSYEENNHAALQELYLANNHLTD 373 (1081)
T ss_pred hh-hhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhh-ccccccccccchhhHHHHHHHHhcCcccc
Confidence 86 5788876333 478999999998766664322 111 2355555554 344444432 346789999999998886
Q ss_pred cccccccccCCcccceeeccCCCccccccccccCCCCCCcceEeecCCCCCcccCccccCCcccccccccccccCcccCC
Q 039990 1088 PLVKWGFDKFSSLRKHCINRCSDAVSFPEVEKGVILPTSLTLIRISDFPKLERLSSKGFHYLLSLEQLKVSSCPNFTSFP 1167 (1217)
Q Consensus 1088 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~lp 1167 (1217)
...+ .+.++.+|+.|+|++ +.+.+||. ..++.+..|++|++++ |+|+.|| ..+.++..|++|...+| .+.++|
T Consensus 374 ~c~p-~l~~~~hLKVLhLsy-NrL~~fpa--s~~~kle~LeeL~LSG-NkL~~Lp-~tva~~~~L~tL~ahsN-~l~~fP 446 (1081)
T KOG0618|consen 374 SCFP-VLVNFKHLKVLHLSY-NRLNSFPA--SKLRKLEELEELNLSG-NKLTTLP-DTVANLGRLHTLRAHSN-QLLSFP 446 (1081)
T ss_pred cchh-hhccccceeeeeecc-cccccCCH--HHHhchHHhHHHhccc-chhhhhh-HHHHhhhhhHHHhhcCC-ceeech
Confidence 6554 689999999999999 56888887 4567889999999999 9999999 88999999999999999 899999
Q ss_pred CCCCCCccceEeccCCcchHHhhcCCCCCCCCcccccceEEECCeee
Q 039990 1168 EAGFPSSLLFLDIQGCPLLENKFKKGKGQEWPKIAHIPSVLIGGKSI 1214 (1217)
Q Consensus 1168 ~~~~~~sL~~L~l~~c~~l~~~~~~~~~~~~~~i~~i~~~~~~~~~~ 1214 (1217)
+...++.|+.+|++.+. |++... .....| +.++++.+.+|..
T Consensus 447 e~~~l~qL~~lDlS~N~-L~~~~l-~~~~p~---p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 447 ELAQLPQLKVLDLSCNN-LSEVTL-PEALPS---PNLKYLDLSGNTR 488 (1081)
T ss_pred hhhhcCcceEEecccch-hhhhhh-hhhCCC---cccceeeccCCcc
Confidence 87888999999998654 443321 122334 4677777777653
No 14
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.79 E-value=1.1e-21 Score=211.61 Aligned_cols=177 Identities=21% Similarity=0.294 Sum_probs=94.1
Q ss_pred ccCcceEeeccC-CCccccccccCCCCcccEEEEcCCCCCccccccCCCCCCcceEEecCCCCCcccCCC-CCCCCcceE
Q 039990 955 SVAVEELTIDSC-SNIESIAERFHDDACLRSIRLSYCKNLKSLPKGLNNLSHLHRRSIQGCHNLVSLPED-ALPSNVVDV 1032 (1217)
Q Consensus 955 l~~L~~L~l~~~-~~l~~l~~~~~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L 1032 (1217)
+++|+.|++++. ..+..+|.++-.+.+|..+++|. +++..+|+.+-++++|+.|++++| .++.+.-. ..-.+|++|
T Consensus 196 mtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~-N~Lp~vPecly~l~~LrrLNLS~N-~iteL~~~~~~W~~lEtL 273 (1255)
T KOG0444|consen 196 MTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE-NNLPIVPECLYKLRNLRRLNLSGN-KITELNMTEGEWENLETL 273 (1255)
T ss_pred chhhhhhhcccccchhhcCCCchhhhhhhhhccccc-cCCCcchHHHhhhhhhheeccCcC-ceeeeeccHHHHhhhhhh
Confidence 445555666552 23445566666677777777776 557777777777777777777774 45554321 112355555
Q ss_pred EEccCcCcccCCCCCCCCCcceEeeccCC-CccccCCCCCCCCCCeEEecCCCCCccccccccccCCcccceeeccCCCc
Q 039990 1033 SIEDCDKLKAPLPTGKLSSLQLLTLIECP-GIVFFPEEGLSTNLTDLEISGDNIYKPLVKWGFDKFSSLRKHCINRCSDA 1111 (1217)
Q Consensus 1033 ~l~~~~~l~~~~~~~~l~~L~~L~l~~c~-~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l 1111 (1217)
++++|+....|..+..++.|+.|.+.+|. ...-+|. .++++.+|+.+...+ +.+
T Consensus 274 NlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPS------------------------GIGKL~~Levf~aan-N~L 328 (1255)
T KOG0444|consen 274 NLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPS------------------------GIGKLIQLEVFHAAN-NKL 328 (1255)
T ss_pred ccccchhccchHHHhhhHHHHHHHhccCcccccCCcc------------------------chhhhhhhHHHHhhc-ccc
Confidence 55555554444445566666666665532 1122333 344444444444444 234
Q ss_pred cccccccccCCCCCCcceEeecCCCCCcccCccccCCcccccccccccccCc
Q 039990 1112 VSFPEVEKGVILPTSLTLIRISDFPKLERLSSKGFHYLLSLEQLKVSSCPNF 1163 (1217)
Q Consensus 1112 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~L~~L~l~~c~~l 1163 (1217)
+-.|+ ++..+..|+.|.++. |.|-.+| ++++-|+.|+.|++.+||++
T Consensus 329 ElVPE---glcRC~kL~kL~L~~-NrLiTLP-eaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 329 ELVPE---GLCRCVKLQKLKLDH-NRLITLP-EAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred ccCch---hhhhhHHHHHhcccc-cceeech-hhhhhcCCcceeeccCCcCc
Confidence 44443 333444455555443 4555555 44555555555555555444
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.51 E-value=2.3e-13 Score=162.23 Aligned_cols=197 Identities=25% Similarity=0.284 Sum_probs=123.4
Q ss_pred CCCccEEeecCCCCCcccccccccccCcceEeeccCCCccccccccCCCCcccEEEEcCCCCCccccccCCCCCCcceEE
Q 039990 931 PVTLKCIQIEDCSNFKVLTSECQLSVAVEELTIDSCSNIESIAERFHDDACLRSIRLSYCKNLKSLPKGLNNLSHLHRRS 1010 (1217)
Q Consensus 931 ~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~ 1010 (1217)
+++|+.|++++|. +..+|. .+..|+.|++++| .++.+|.. +++|+.|++++| .+..+|.. ..+|+.|+
T Consensus 261 p~sL~~L~Ls~N~-L~~Lp~---lp~~L~~L~Ls~N-~Lt~LP~~---p~~L~~LdLS~N-~L~~Lp~l---p~~L~~L~ 328 (788)
T PRK15387 261 PPGLLELSIFSNP-LTHLPA---LPSGLCKLWIFGN-QLTSLPVL---PPGLQELSVSDN-QLASLPAL---PSELCKLW 328 (788)
T ss_pred ccccceeeccCCc-hhhhhh---chhhcCEEECcCC-cccccccc---ccccceeECCCC-ccccCCCC---cccccccc
Confidence 4567777777764 444443 2356777888775 45566542 467888888875 45556542 24567777
Q ss_pred ecCCCCCcccCCCCCCCCcceEEEccCcCcccCCCCCCCCCcceEeeccCCCccccCCCCCCCCCCeEEecCCCCCcccc
Q 039990 1011 IQGCHNLVSLPEDALPSNVVDVSIEDCDKLKAPLPTGKLSSLQLLTLIECPGIVFFPEEGLSTNLTDLEISGDNIYKPLV 1090 (1217)
Q Consensus 1011 l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~ 1090 (1217)
+++| .++.+|. ++.+|+.|++++|.....|. ..++|+.|++++| .+..+|. .+.+|+.|++++|.... ++
T Consensus 329 Ls~N-~L~~LP~--lp~~Lq~LdLS~N~Ls~LP~---lp~~L~~L~Ls~N-~L~~LP~--l~~~L~~LdLs~N~Lt~-LP 398 (788)
T PRK15387 329 AYNN-QLTSLPT--LPSGLQELSVSDNQLASLPT---LPSELYKLWAYNN-RLTSLPA--LPSGLKELIVSGNRLTS-LP 398 (788)
T ss_pred cccC-ccccccc--cccccceEecCCCccCCCCC---CCcccceehhhcc-ccccCcc--cccccceEEecCCcccC-CC
Confidence 7774 4666664 45677888887765544321 2356777777664 4555553 34567777777775542 33
Q ss_pred ccccccCCcccceeeccCCCccccccccccCCCCCCcceEeecCCCCCcccCccccCCcccccccccccccC
Q 039990 1091 KWGFDKFSSLRKHCINRCSDAVSFPEVEKGVILPTSLTLIRISDFPKLERLSSKGFHYLLSLEQLKVSSCPN 1162 (1217)
Q Consensus 1091 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~L~~L~l~~c~~ 1162 (1217)
. ..++|+.|++++|. +..+|. .+.+|+.|++++ |+++.|| ..+.++++|+.|++++|+.
T Consensus 399 ~----l~s~L~~LdLS~N~-LssIP~------l~~~L~~L~Ls~-NqLt~LP-~sl~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 399 V----LPSELKELMVSGNR-LTSLPM------LPSGLLSLSVYR-NQLTRLP-ESLIHLSSETTVNLEGNPL 457 (788)
T ss_pred C----cccCCCEEEccCCc-CCCCCc------chhhhhhhhhcc-CcccccC-hHHhhccCCCeEECCCCCC
Confidence 2 13567777777754 555664 245677777777 6777777 5577777777777777753
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.47 E-value=4.6e-13 Score=159.67 Aligned_cols=173 Identities=24% Similarity=0.264 Sum_probs=75.0
Q ss_pred CCccEEeecCCCCCcccccccccccCcceEeeccCCCccccccccCCCCcccEEEEcCCCCCccccccCCCCCCcceEEe
Q 039990 932 VTLKCIQIEDCSNFKVLTSECQLSVAVEELTIDSCSNIESIAERFHDDACLRSIRLSYCKNLKSLPKGLNNLSHLHRRSI 1011 (1217)
Q Consensus 932 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~l 1011 (1217)
.+|+.|++++|. +..+|. .+++|+.|++++| .+..+|.. ..+|+.|.+++| .+..+|.. ..+|+.|++
T Consensus 282 ~~L~~L~Ls~N~-Lt~LP~---~p~~L~~LdLS~N-~L~~Lp~l---p~~L~~L~Ls~N-~L~~LP~l---p~~Lq~LdL 349 (788)
T PRK15387 282 SGLCKLWIFGNQ-LTSLPV---LPPGLQELSVSDN-QLASLPAL---PSELCKLWAYNN-QLTSLPTL---PSGLQELSV 349 (788)
T ss_pred hhcCEEECcCCc-cccccc---cccccceeECCCC-ccccCCCC---cccccccccccC-cccccccc---ccccceEec
Confidence 445555555542 333332 2344555555554 33334331 234555555553 23344421 134555555
Q ss_pred cCCCCCcccCCCCCCCCcceEEEccCcCcccCCCCCCCCCcceEeeccCCCccccCCCCCCCCCCeEEecCCCCCccccc
Q 039990 1012 QGCHNLVSLPEDALPSNVVDVSIEDCDKLKAPLPTGKLSSLQLLTLIECPGIVFFPEEGLSTNLTDLEISGDNIYKPLVK 1091 (1217)
Q Consensus 1012 ~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 1091 (1217)
++| .++.+|. .+++|..|++++|.....| ...++|+.|++++| .+..+|. .+++|+.|++++|.... +|.
T Consensus 350 S~N-~Ls~LP~--lp~~L~~L~Ls~N~L~~LP---~l~~~L~~LdLs~N-~Lt~LP~--l~s~L~~LdLS~N~Lss-IP~ 419 (788)
T PRK15387 350 SDN-QLASLPT--LPSELYKLWAYNNRLTSLP---ALPSGLKELIVSGN-RLTSLPV--LPSELKELMVSGNRLTS-LPM 419 (788)
T ss_pred CCC-ccCCCCC--CCcccceehhhccccccCc---ccccccceEEecCC-cccCCCC--cccCCCEEEccCCcCCC-CCc
Confidence 553 3444443 3345555555554432221 11234555555553 2333332 23455555555554332 221
Q ss_pred cccccCCcccceeeccCCCccccccccccCCCCCCcceEeecC
Q 039990 1092 WGFDKFSSLRKHCINRCSDAVSFPEVEKGVILPTSLTLIRISD 1134 (1217)
Q Consensus 1092 ~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~ 1134 (1217)
...+|+.|++++| .+..+|. .+..+++|+.|++++
T Consensus 420 ----l~~~L~~L~Ls~N-qLt~LP~---sl~~L~~L~~LdLs~ 454 (788)
T PRK15387 420 ----LPSGLLSLSVYRN-QLTRLPE---SLIHLSSETTVNLEG 454 (788)
T ss_pred ----chhhhhhhhhccC-cccccCh---HHhhccCCCeEECCC
Confidence 1234455555553 2344444 233345555555555
No 17
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.39 E-value=8.8e-15 Score=151.34 Aligned_cols=116 Identities=24% Similarity=0.353 Sum_probs=84.0
Q ss_pred chhhhhhhcCCCCcceEEEcCCCCcccccccccccccChhhhcccccCcEEeccccccccccccc-ccccccccEEeecC
Q 039990 470 SPMVLSDLLPKCKKLRVLSLEKDNIAEVPISIGCLKCLPEAITSLFNLEILILSYCWCLLKLPSS-IGNLVNLHHLDIEG 548 (1217)
Q Consensus 470 ~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~ 548 (1217)
...+++.+|+.+++||.|||+.|+|+.|. |.+|..|..|-.|.+-++..|+.+|++ |++|..|+.|.+.-
T Consensus 79 I~~iP~~aF~~l~~LRrLdLS~N~Is~I~---------p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNa 149 (498)
T KOG4237|consen 79 ISSIPPGAFKTLHRLRRLDLSKNNISFIA---------PDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNA 149 (498)
T ss_pred cccCChhhccchhhhceecccccchhhcC---------hHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcCh
Confidence 35678888888888888888888888876 678888888888887775578888876 78888888888877
Q ss_pred CccccccCCC-CccCcccccccccccccChhhhHHHHhcCCCCCCeEEEE
Q 039990 549 ADRLCELPLG-MKELKCLRTLTDFINVIDSQEANEAMLRGKKDLEVLKLV 597 (1217)
Q Consensus 549 ~~~l~~lp~~-i~~L~~L~~L~~~~n~~~~~~~~~~~l~~l~~L~~L~l~ 597 (1217)
| ++.-++.+ +..|++|..|.++.|.... .....+.++..++.+.+.
T Consensus 150 n-~i~Cir~~al~dL~~l~lLslyDn~~q~--i~~~tf~~l~~i~tlhlA 196 (498)
T KOG4237|consen 150 N-HINCIRQDALRDLPSLSLLSLYDNKIQS--ICKGTFQGLAAIKTLHLA 196 (498)
T ss_pred h-hhcchhHHHHHHhhhcchhcccchhhhh--hccccccchhccchHhhh
Confidence 7 66666543 6777888877777654432 112235556666666554
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.35 E-value=3.8e-12 Score=153.30 Aligned_cols=243 Identities=21% Similarity=0.325 Sum_probs=177.7
Q ss_pred ccceEeccCCCCcccccCCCCCCCccEEeecCCCCCcccccccccccCcceEeeccCCCccccccccCCCCcccEEEEcC
Q 039990 910 LESLSVQSCPSLTRLWSSGRLPVTLKCIQIEDCSNFKVLTSECQLSVAVEELTIDSCSNIESIAERFHDDACLRSIRLSY 989 (1217)
Q Consensus 910 L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~L~~ 989 (1217)
...|.+++. .++.+|. ..|.+|+.|++++| .+..+|..+. .+|++|++++| .++.+|..+ .++|+.|+|++
T Consensus 180 ~~~L~L~~~-~LtsLP~--~Ip~~L~~L~Ls~N-~LtsLP~~l~--~nL~~L~Ls~N-~LtsLP~~l--~~~L~~L~Ls~ 250 (754)
T PRK15370 180 KTELRLKIL-GLTTIPA--CIPEQITTLILDNN-ELKSLPENLQ--GNIKTLYANSN-QLTSIPATL--PDTIQEMELSI 250 (754)
T ss_pred ceEEEeCCC-CcCcCCc--ccccCCcEEEecCC-CCCcCChhhc--cCCCEEECCCC-ccccCChhh--hccccEEECcC
Confidence 556777664 4555532 24678999999887 4556776543 58999999986 467787654 36899999999
Q ss_pred CCCCccccccCCCCCCcceEEecCCCCCcccCCCCCCCCcceEEEccCcCcccCCCCCCCCCcceEeeccCCCccccCCC
Q 039990 990 CKNLKSLPKGLNNLSHLHRRSIQGCHNLVSLPEDALPSNVVDVSIEDCDKLKAPLPTGKLSSLQLLTLIECPGIVFFPEE 1069 (1217)
Q Consensus 990 c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~ 1069 (1217)
|. +..+|..+. .+|+.|++++ +.++.+|. .++++|+.|++++|.....| ..-.++|+.|++++|. +..+|.
T Consensus 251 N~-L~~LP~~l~--s~L~~L~Ls~-N~L~~LP~-~l~~sL~~L~Ls~N~Lt~LP--~~lp~sL~~L~Ls~N~-Lt~LP~- 321 (754)
T PRK15370 251 NR-ITELPERLP--SALQSLDLFH-NKISCLPE-NLPEELRYLSVYDNSIRTLP--AHLPSGITHLNVQSNS-LTALPE- 321 (754)
T ss_pred Cc-cCcCChhHh--CCCCEEECcC-CccCcccc-ccCCCCcEEECCCCccccCc--ccchhhHHHHHhcCCc-cccCCc-
Confidence 65 667877663 5899999986 46888876 34578999999998654432 2223579999999864 555553
Q ss_pred CCCCCCCeEEecCCCCCccccccccccCCcccceeeccCCCccccccccccCCCCCCcceEeecCCCCCcccCccccCCc
Q 039990 1070 GLSTNLTDLEISGDNIYKPLVKWGFDKFSSLRKHCINRCSDAVSFPEVEKGVILPTSLTLIRISDFPKLERLSSKGFHYL 1149 (1217)
Q Consensus 1070 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l 1149 (1217)
..+++|+.|++++|.... ++. .+ .++|+.|++++|. +..+|. ..+++|+.|++++ |.+..+| ..+.
T Consensus 322 ~l~~sL~~L~Ls~N~Lt~-LP~-~l--~~sL~~L~Ls~N~-L~~LP~-----~lp~~L~~LdLs~-N~Lt~LP-~~l~-- 387 (754)
T PRK15370 322 TLPPGLKTLEAGENALTS-LPA-SL--PPELQVLDVSKNQ-ITVLPE-----TLPPTITTLDVSR-NALTNLP-ENLP-- 387 (754)
T ss_pred cccccceeccccCCcccc-CCh-hh--cCcccEEECCCCC-CCcCCh-----hhcCCcCEEECCC-CcCCCCC-HhHH--
Confidence 345799999999987654 443 12 3789999999974 566776 2457999999999 6888998 3443
Q ss_pred ccccccccccccCcccCCCC-----CCCCccceEeccCCcc
Q 039990 1150 LSLEQLKVSSCPNFTSFPEA-----GFPSSLLFLDIQGCPL 1185 (1217)
Q Consensus 1150 ~~L~~L~l~~c~~l~~lp~~-----~~~~sL~~L~l~~c~~ 1185 (1217)
.+|+.|++++| .+..+|.. +..+++..|++.++|-
T Consensus 388 ~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 388 AALQIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred HHHHHHhhccC-CcccCchhHHHHhhcCCCccEEEeeCCCc
Confidence 47999999999 78888863 2347788999999873
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.27 E-value=8.7e-12 Score=150.23 Aligned_cols=251 Identities=16% Similarity=0.257 Sum_probs=179.4
Q ss_pred CCccEEeecCCCCCcccccccccccCcceEeeccCCCccccccccCCCCcccEEEEcCCCCCccccccCCCCCCcceEEe
Q 039990 932 VTLKCIQIEDCSNFKVLTSECQLSVAVEELTIDSCSNIESIAERFHDDACLRSIRLSYCKNLKSLPKGLNNLSHLHRRSI 1011 (1217)
Q Consensus 932 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~l 1011 (1217)
.+...|+++++ .++.+|..+ .+.|+.|++++| .++.+|..+. ++|++|++++| .+..+|..+ .++|+.|++
T Consensus 178 ~~~~~L~L~~~-~LtsLP~~I--p~~L~~L~Ls~N-~LtsLP~~l~--~nL~~L~Ls~N-~LtsLP~~l--~~~L~~L~L 248 (754)
T PRK15370 178 NNKTELRLKIL-GLTTIPACI--PEQITTLILDNN-ELKSLPENLQ--GNIKTLYANSN-QLTSIPATL--PDTIQEMEL 248 (754)
T ss_pred cCceEEEeCCC-CcCcCCccc--ccCCcEEEecCC-CCCcCChhhc--cCCCEEECCCC-ccccCChhh--hccccEEEC
Confidence 35678888875 566677644 368999999986 6778887654 69999999986 577888765 358999999
Q ss_pred cCCCCCcccCCCCCCCCcceEEEccCcCcccCCCCCCCCCcceEeeccCCCccccCCCCCCCCCCeEEecCCCCCccccc
Q 039990 1012 QGCHNLVSLPEDALPSNVVDVSIEDCDKLKAPLPTGKLSSLQLLTLIECPGIVFFPEEGLSTNLTDLEISGDNIYKPLVK 1091 (1217)
Q Consensus 1012 ~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 1091 (1217)
++|. ++.+|.. ++++|+.|++++|..... |..-.++|+.|++++| .+..+|. ..+++|+.|++++|.... ++.
T Consensus 249 s~N~-L~~LP~~-l~s~L~~L~Ls~N~L~~L--P~~l~~sL~~L~Ls~N-~Lt~LP~-~lp~sL~~L~Ls~N~Lt~-LP~ 321 (754)
T PRK15370 249 SINR-ITELPER-LPSALQSLDLFHNKISCL--PENLPEELRYLSVYDN-SIRTLPA-HLPSGITHLNVQSNSLTA-LPE 321 (754)
T ss_pred cCCc-cCcCChh-HhCCCCEEECcCCccCcc--ccccCCCCcEEECCCC-ccccCcc-cchhhHHHHHhcCCcccc-CCc
Confidence 9975 7788763 567999999998765433 3233468999999996 5666664 345689999999987663 433
Q ss_pred cccccCCcccceeeccCCCccccccccccCCCCCCcceEeecCCCCCcccCccccCCcccccccccccccCcccCCCCCC
Q 039990 1092 WGFDKFSSLRKHCINRCSDAVSFPEVEKGVILPTSLTLIRISDFPKLERLSSKGFHYLLSLEQLKVSSCPNFTSFPEAGF 1171 (1217)
Q Consensus 1092 ~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~ 1171 (1217)
. -.++|+.|++++|. +..+|. ..+++|+.|++++ |++..+| ..+. ++|++|++++| .++.+|.. .
T Consensus 322 ~---l~~sL~~L~Ls~N~-Lt~LP~-----~l~~sL~~L~Ls~-N~L~~LP-~~lp--~~L~~LdLs~N-~Lt~LP~~-l 386 (754)
T PRK15370 322 T---LPPGLKTLEAGENA-LTSLPA-----SLPPELQVLDVSK-NQITVLP-ETLP--PTITTLDVSRN-ALTNLPEN-L 386 (754)
T ss_pred c---ccccceeccccCCc-cccCCh-----hhcCcccEEECCC-CCCCcCC-hhhc--CCcCEEECCCC-cCCCCCHh-H
Confidence 1 24689999999975 666776 3468999999999 6788888 3443 68999999999 78888864 4
Q ss_pred CCccceEeccCCcchHHhhcCCCCCCCCcccccceEEECCeeee
Q 039990 1172 PSSLLFLDIQGCPLLENKFKKGKGQEWPKIAHIPSVLIGGKSIH 1215 (1217)
Q Consensus 1172 ~~sL~~L~l~~c~~l~~~~~~~~~~~~~~i~~i~~~~~~~~~~~ 1215 (1217)
+.+|+.|++++|. +..... .........+++..+.+.+|.+.
T Consensus 387 ~~sL~~LdLs~N~-L~~LP~-sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 387 PAALQIMQASRNN-LVRLPE-SLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HHHHHHHhhccCC-cccCch-hHHHHhhcCCCccEEEeeCCCcc
Confidence 5689999999874 221100 00000111245566777776653
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.24 E-value=1.9e-13 Score=124.46 Aligned_cols=161 Identities=28% Similarity=0.408 Sum_probs=126.1
Q ss_pred CCCcceEEEcCCCCcccccccccccccChhhhcccccCcEEecccccccccccccccccccccEEeecCCccccccCCCC
Q 039990 480 KCKKLRVLSLEKDNIAEVPISIGCLKCLPEAITSLFNLEILILSYCWCLLKLPSSIGNLVNLHHLDIEGADRLCELPLGM 559 (1217)
Q Consensus 480 ~l~~Lr~L~L~~~~i~~lp~~i~~L~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i 559 (1217)
.+.+...|.|++|+++.+| ..|..|.+|++|++.+| .++++|.+|+.|++|++|+++-| ++..+|.+|
T Consensus 31 ~~s~ITrLtLSHNKl~~vp----------pnia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgmn-rl~~lprgf 98 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVP----------PNIAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGMN-RLNILPRGF 98 (264)
T ss_pred chhhhhhhhcccCceeecC----------CcHHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecchh-hhhcCcccc
Confidence 4556777889999999765 46888899999999998 89999999999999999999998 899999999
Q ss_pred ccCcccccccccccccChhhhHHHHhcCCCCCCeEEEEecCCCCchhhHHHHhcccCCCCCccEEEEEeeCCCCCCCCcC
Q 039990 560 KELKCLRTLTDFINVIDSQEANEAMLRGKKDLEVLKLVWSGGPVDELREKNILDMLKPHCNIKRLEIISYGSTRFPSWVG 639 (1217)
Q Consensus 560 ~~L~~L~~L~~~~n~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~ 639 (1217)
|.+..|++|++..|..+... ....+..+..|+.|++..+....+|..++
T Consensus 99 gs~p~levldltynnl~e~~-------------------------------lpgnff~m~tlralyl~dndfe~lp~dvg 147 (264)
T KOG0617|consen 99 GSFPALEVLDLTYNNLNENS-------------------------------LPGNFFYMTTLRALYLGDNDFEILPPDVG 147 (264)
T ss_pred CCCchhhhhhcccccccccc-------------------------------CCcchhHHHHHHHHHhcCCCcccCChhhh
Confidence 99999999987765443221 11222334466777778888888888886
Q ss_pred CCCcCcccEEEEecCCCCCCCC-CCCCcCCCCeeEEcCCCCceEeCccc
Q 039990 640 DPSFSNVAVLKLENCDRCTSLP-SLGQLCSLKDLTIVGMSALKSVGSEI 687 (1217)
Q Consensus 640 ~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~l~~~~~l~~~~~~~ 687 (1217)
. +++|+.|.+..+ .+-.+| .++.+..|++|++.+ +.+..++.+.
T Consensus 148 ~--lt~lqil~lrdn-dll~lpkeig~lt~lrelhiqg-nrl~vlppel 192 (264)
T KOG0617|consen 148 K--LTNLQILSLRDN-DLLSLPKEIGDLTRLRELHIQG-NRLTVLPPEL 192 (264)
T ss_pred h--hcceeEEeeccC-chhhCcHHHHHHHHHHHHhccc-ceeeecChhh
Confidence 5 888888888885 444667 588889999999987 6677766543
No 21
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.16 E-value=1.2e-12 Score=135.74 Aligned_cols=222 Identities=12% Similarity=0.064 Sum_probs=128.8
Q ss_pred CCCCCccEEeecCCCCCcccccccccccCcceEeeccCCCcccc-ccccCCCCcccEEEEcCCCCCccccccCCCCCCcc
Q 039990 929 RLPVTLKCIQIEDCSNFKVLTSECQLSVAVEELTIDSCSNIESI-AERFHDDACLRSIRLSYCKNLKSLPKGLNNLSHLH 1007 (1217)
Q Consensus 929 ~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~ 1007 (1217)
..+++|+.|++++|.....-+..|.+...+++|.+..|. ++.+ ...+.+++.|+.|+|++|......|.+|..+.+|.
T Consensus 271 ~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~-l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~ 349 (498)
T KOG4237|consen 271 KKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNK-LEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLS 349 (498)
T ss_pred hhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcch-HHHHHHHhhhccccceeeeecCCeeEEEecccccccceee
Confidence 344589999999987776777888899999999999964 5544 44566799999999999765555588899999999
Q ss_pred eEEecCCCCCcccCCCCCCCCcceE--EEccCcCcccCCCCCCCCCcceEeeccCCCccccCCCCCCCCCCeEEecCCCC
Q 039990 1008 RRSIQGCHNLVSLPEDALPSNVVDV--SIEDCDKLKAPLPTGKLSSLQLLTLIECPGIVFFPEEGLSTNLTDLEISGDNI 1085 (1217)
Q Consensus 1008 ~L~l~~c~~l~~l~~~~~~~~L~~L--~l~~~~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~ 1085 (1217)
.|++-.|+..-.- .|..| .+.+...... .+.+.-..++.+.+++...-. +..+ ....+-.+.-+.|+
T Consensus 350 ~l~l~~Np~~CnC-------~l~wl~~Wlr~~~~~~~-~~Cq~p~~~~~~~~~dv~~~~-~~c~-~~ee~~~~~s~~cP- 418 (498)
T KOG4237|consen 350 TLNLLSNPFNCNC-------RLAWLGEWLRKKSVVGN-PRCQSPGFVRQIPISDVAFGD-FRCG-GPEELGCLTSSPCP- 418 (498)
T ss_pred eeehccCcccCcc-------chHHHHHHHhhCCCCCC-CCCCCCchhccccchhccccc-cccC-CccccCCCCCCCCC-
Confidence 9999877642110 01100 0111111111 222333345555555432111 1100 11111112222222
Q ss_pred CccccccccccCCcccceeeccCCCccccccccccCCCCCCcceEeecCCCCCcccCccccCCcccccccccccccCccc
Q 039990 1086 YKPLVKWGFDKFSSLRKHCINRCSDAVSFPEVEKGVILPTSLTLIRISDFPKLERLSSKGFHYLLSLEQLKVSSCPNFTS 1165 (1217)
Q Consensus 1086 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~ 1165 (1217)
..++.+.+..=..+..++.+|. ..+..-.+|++.+ +.++.+|.. .+.+| .+++++| .+..
T Consensus 419 ---------~~c~c~~tVvRcSnk~lk~lp~-----~iP~d~telyl~g-n~~~~vp~~---~~~~l-~~dls~n-~i~~ 478 (498)
T KOG4237|consen 419 ---------PPCTCLDTVVRCSNKLLKLLPR-----GIPVDVTELYLDG-NAITSVPDE---LLRSL-LLDLSNN-RISS 478 (498)
T ss_pred ---------CCcchhhhhHhhcccchhhcCC-----CCCchhHHHhccc-chhcccCHH---HHhhh-hcccccC-ceeh
Confidence 2234444433333455666776 4566777788887 788888833 56677 7888887 5666
Q ss_pred CCCC--CCCCccceEeccC
Q 039990 1166 FPEA--GFPSSLLFLDIQG 1182 (1217)
Q Consensus 1166 lp~~--~~~~sL~~L~l~~ 1182 (1217)
+... ..++.|.+|-+++
T Consensus 479 Lsn~tf~n~tql~tlilsy 497 (498)
T KOG4237|consen 479 LSNYTFSNMTQLSTLILSY 497 (498)
T ss_pred hhcccccchhhhheeEEec
Confidence 6543 2235555555543
No 22
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.16 E-value=3.5e-09 Score=137.68 Aligned_cols=282 Identities=14% Similarity=0.202 Sum_probs=172.2
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCC-cccHHHHHHHH
Q 039990 78 EPAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSD-DFDILRISKAI 156 (1217)
Q Consensus 78 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i 156 (1217)
.+.+|-|+.-.+.+ ... ...+++.|+|++|.||||++.++.++ ++.++|+++.. +.+...+...+
T Consensus 13 ~~~~~~R~rl~~~l----~~~-----~~~~~~~v~apaG~GKTtl~~~~~~~-----~~~~~w~~l~~~d~~~~~f~~~l 78 (903)
T PRK04841 13 LHNTVVRERLLAKL----SGA-----NNYRLVLVTSPAGYGKTTLISQWAAG-----KNNLGWYSLDESDNQPERFASYL 78 (903)
T ss_pred ccccCcchHHHHHH----hcc-----cCCCeEEEECCCCCCHHHHHHHHHHh-----CCCeEEEecCcccCCHHHHHHHH
Confidence 34567776555444 322 34579999999999999999997753 23689999864 44666777777
Q ss_pred HHHhhcCCCCC-------------CChhHHHHHHHHHHHh--c-----CcCH------HHHHHhhcccCCCCCCcEEEEE
Q 039990 157 LESITRSSCGL-------------TDLNSVQLKLKEAVFK--K-----NKSY------ELWQALKSPFMAGAPGSRIIVT 210 (1217)
Q Consensus 157 ~~~l~~~~~~~-------------~~~~~~~~~l~~~l~~--~-----~~~~------~~~~~l~~~~~~~~~gs~ilvT 210 (1217)
+..+....... .+.......+...+.. . +|+. ...+.+...+.....+.++|||
T Consensus 79 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~ 158 (903)
T PRK04841 79 IAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVL 158 (903)
T ss_pred HHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEE
Confidence 77775322110 1122233333333332 1 2222 2223333333344567788899
Q ss_pred cCchHHH--Hhh-CCCceEecc----CCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhccCCchhHHHHHHHhhc
Q 039990 211 TRSMDVA--LKM-GSGKNYELK----HLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGLPLAARALGGLLRS 283 (1217)
Q Consensus 211 tR~~~v~--~~~-~~~~~~~l~----~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~ 283 (1217)
||..... ... ......++. +|+.+|+.++|...... . -..+.+.+|.+.++|.|+++..++..++.
T Consensus 159 sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~----~---~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~ 231 (903)
T PRK04841 159 SRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSS----P---IEAAESSRLCDDVEGWATALQLIALSARQ 231 (903)
T ss_pred eCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCC----C---CCHHHHHHHHHHhCChHHHHHHHHHHHhh
Confidence 9984211 111 122355566 99999999999776421 1 12456789999999999999998877754
Q ss_pred CCChhHHHHHHhhccCCCCC--CCCchHHHH-HhhcCCChhHHHHHHHhhcCCCCcccChHHHHHHHHHhCCcccccccc
Q 039990 284 KQRVDEWRAILNSKIWDLED--EIEIPSVLK-LSYHHLPSHLKRCFAYCAILPKDYEFQEEELVLLWIAEGFIQQSKYSK 360 (1217)
Q Consensus 284 ~~~~~~w~~~~~~~~~~~~~--~~~i~~~l~-~sy~~L~~~~k~~f~~~~~fp~~~~i~~~~li~~w~~~g~i~~~~~~~ 360 (1217)
..... ..... .... ...+...+. -.|+.||++.++.++..|+++ .++.+..- .+...
T Consensus 232 ~~~~~--~~~~~----~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~---~~~~~l~~------~l~~~----- 291 (903)
T PRK04841 232 NNSSL--HDSAR----RLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR---SMNDALIV------RVTGE----- 291 (903)
T ss_pred CCCch--hhhhH----hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc---cCCHHHHH------HHcCC-----
Confidence 43210 00111 1111 123555443 348999999999999999996 34433221 11111
Q ss_pred cHHHHHHHHHHHHHhccCCcc-cCCCCCeEEEchhHHHHHHHHh
Q 039990 361 QLEDWGSEYFHDLLSRSMFQK-SSNNESKFVMHDLVHDLAQWAS 403 (1217)
Q Consensus 361 ~~~~~~~~~l~~L~~~sl~~~-~~~~~~~~~mh~lv~~~~~~~~ 403 (1217)
+.+.+.+++|.+.+++.. .+.+...|+.|++++++++...
T Consensus 292 ---~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 292 ---ENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred ---CcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 224677999999999754 3334458999999999998765
No 23
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.03 E-value=1.7e-10 Score=141.51 Aligned_cols=238 Identities=22% Similarity=0.238 Sum_probs=150.7
Q ss_pred ceeEEEEEeccccccccccccccccCccceEccccccccccccccchhhhhhhcCCCCcceEEEcCCCCccccccccccc
Q 039990 425 KVRHCSYIRSRRFAVKDKFKFLDEVENLRTFLPIFMEDFFISFCISPMVLSDLLPKCKKLRVLSLEKDNIAEVPISIGCL 504 (1217)
Q Consensus 425 ~~r~ls~~~~~~~~~~~~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L 504 (1217)
+.+.+-+..+..+.......+|..++.||+|.+.++. ....+|..++.+-+||+|+|+++.|+.+
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~--------~l~~LP~~I~~Li~LryL~L~~t~I~~L------- 610 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNS--------SLSKLPSSIGELVHLRYLDLSDTGISHL------- 610 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCC--------ccCcCChHHhhhhhhhcccccCCCcccc-------
Confidence 4666666555321223344568889999999987643 3456788899999999999999999965
Q ss_pred ccChhhhcccccCcEEecccccccccccccccccccccEEeecCCccccccCCCCccCcccccccccccccChhhhHHHH
Q 039990 505 KCLPEAITSLFNLEILILSYCWCLLKLPSSIGNLVNLHHLDIEGADRLCELPLGMKELKCLRTLTDFINVIDSQEANEAM 584 (1217)
Q Consensus 505 ~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~~~~n~~~~~~~~~~~ 584 (1217)
|..+.+|+.|++|++.++..+..+|..+..|.+||+|.+... ....-...++.+.+|++|..+....... .....
T Consensus 611 ---P~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s-~~~~~~~~l~el~~Le~L~~ls~~~~s~-~~~e~ 685 (889)
T KOG4658|consen 611 ---PSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS-ALSNDKLLLKELENLEHLENLSITISSV-LLLED 685 (889)
T ss_pred ---chHHHHHHhhheeccccccccccccchhhhcccccEEEeecc-ccccchhhHHhhhcccchhhheeecchh-HhHhh
Confidence 577899999999999998777777776777999999999876 2222222356666666665443322222 22223
Q ss_pred hcCCCCCCeEEEEecCCCCchhhHHHHhcccCCCCCccEEEEEeeCCCCCCC-CcCC---C-CcCcccEEEEecCCCCCC
Q 039990 585 LRGKKDLEVLKLVWSGGPVDELREKNILDMLKPHCNIKRLEIISYGSTRFPS-WVGD---P-SFSNVAVLKLENCDRCTS 659 (1217)
Q Consensus 585 l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~-~~~~---~-~l~~L~~L~L~~~~~~~~ 659 (1217)
+..+..|..+...... ...........+..+.+|+.|.+.++.+..... |... . .|+++..+.+.+|.....
T Consensus 686 l~~~~~L~~~~~~l~~---~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~ 762 (889)
T KOG4658|consen 686 LLGMTRLRSLLQSLSI---EGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRD 762 (889)
T ss_pred hhhhHHHHHHhHhhhh---cccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccc
Confidence 3444444433221110 001112233455667888888888877654322 2211 0 144566666666666666
Q ss_pred CCCCCCcCCCCeeEEcCCCCceEeCc
Q 039990 660 LPSLGQLCSLKDLTIVGMSALKSVGS 685 (1217)
Q Consensus 660 l~~l~~l~~L~~L~l~~~~~l~~~~~ 685 (1217)
+.+..-.|+|+.|.+..|..++.+.+
T Consensus 763 l~~~~f~~~L~~l~l~~~~~~e~~i~ 788 (889)
T KOG4658|consen 763 LTWLLFAPHLTSLSLVSCRLLEDIIP 788 (889)
T ss_pred cchhhccCcccEEEEecccccccCCC
Confidence 65666677888888888777766543
No 24
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.02 E-value=1.8e-11 Score=111.80 Aligned_cols=157 Identities=20% Similarity=0.248 Sum_probs=79.4
Q ss_pred CCcccEEEEcCCCCCccccccCCCCCCcceEEecCCCCCcccCCCC-CCCCcceEEEccCcCcccCCCCCCCCCcceEee
Q 039990 979 DACLRSIRLSYCKNLKSLPKGLNNLSHLHRRSIQGCHNLVSLPEDA-LPSNVVDVSIEDCDKLKAPLPTGKLSSLQLLTL 1057 (1217)
Q Consensus 979 l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~-~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l 1057 (1217)
+++.+.|.+++ +.+..+|..+..+.+|+.|++++ ++++.+|... ..++|+.|.++-+.....|..++.+|.|+.|++
T Consensus 32 ~s~ITrLtLSH-NKl~~vppnia~l~nlevln~~n-nqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 32 MSNITRLTLSH-NKLTVVPPNIAELKNLEVLNLSN-NQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDL 109 (264)
T ss_pred hhhhhhhhccc-CceeecCCcHHHhhhhhhhhccc-chhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhc
Confidence 33444444444 23444444444444444444444 2344443211 011222222222222222244466777777777
Q ss_pred ccCCCc-cccCCCCCCCCCCeEEecCCCCCccccccccccCCcccceeeccCCCccccccccccCCCCCCcceEeecCCC
Q 039990 1058 IECPGI-VFFPEEGLSTNLTDLEISGDNIYKPLVKWGFDKFSSLRKHCINRCSDAVSFPEVEKGVILPTSLTLIRISDFP 1136 (1217)
Q Consensus 1058 ~~c~~l-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~ 1136 (1217)
++++-- ..+|. -|-.++.|+-|.++.| ..+.+|. ....+++|+.|.+.+ |
T Consensus 110 tynnl~e~~lpg------------------------nff~m~tlralyl~dn-dfe~lp~---dvg~lt~lqil~lrd-n 160 (264)
T KOG0617|consen 110 TYNNLNENSLPG------------------------NFFYMTTLRALYLGDN-DFEILPP---DVGKLTNLQILSLRD-N 160 (264)
T ss_pred cccccccccCCc------------------------chhHHHHHHHHHhcCC-CcccCCh---hhhhhcceeEEeecc-C
Confidence 665422 23332 2334455555555553 2333443 234557777777777 6
Q ss_pred CCcccCccccCCcccccccccccccCcccCCC
Q 039990 1137 KLERLSSKGFHYLLSLEQLKVSSCPNFTSFPE 1168 (1217)
Q Consensus 1137 ~l~~l~~~~~~~l~~L~~L~l~~c~~l~~lp~ 1168 (1217)
.+-++| +.++.++.|++|+|.+| .++.+|.
T Consensus 161 dll~lp-keig~lt~lrelhiqgn-rl~vlpp 190 (264)
T KOG0617|consen 161 DLLSLP-KEIGDLTRLRELHIQGN-RLTVLPP 190 (264)
T ss_pred chhhCc-HHHHHHHHHHHHhcccc-eeeecCh
Confidence 777777 66777778888888877 6666654
No 25
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.94 E-value=2e-07 Score=107.97 Aligned_cols=286 Identities=13% Similarity=0.070 Sum_probs=164.1
Q ss_pred CCCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhccccCCC--CCeEEEEeCCcccHHHHHH
Q 039990 77 SEPAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDF--KPKAWVCVSDDFDILRISK 154 (1217)
Q Consensus 77 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F--~~~~wv~~~~~~~~~~~~~ 154 (1217)
.+..++||++++++|...+...-.+ .....+.|+|++|+|||++++.++++. .... -..++|.+....+...++.
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~--~~~~~~lI~G~~GtGKT~l~~~v~~~l-~~~~~~~~~v~in~~~~~~~~~~~~ 104 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRG--SRPLNVLIYGPPGTGKTTTVKKVFEEL-EEIAVKVVYVYINCQIDRTRYAIFS 104 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCC--CCCCeEEEECCCCCCHHHHHHHHHHHH-HHhcCCcEEEEEECCcCCCHHHHHH
Confidence 3457999999999999988543211 233567899999999999999999873 2222 2355666666667888999
Q ss_pred HHHHHhhcCCC--CCCChhHHHHHHHHHHHhc-------CcCHHH---------HHHhhcccCCCCCCcE--EEEEcCch
Q 039990 155 AILESITRSSC--GLTDLNSVQLKLKEAVFKK-------NKSYEL---------WQALKSPFMAGAPGSR--IIVTTRSM 214 (1217)
Q Consensus 155 ~i~~~l~~~~~--~~~~~~~~~~~l~~~l~~~-------~~~~~~---------~~~l~~~~~~~~~gs~--ilvTtR~~ 214 (1217)
.|++++..... .....++....+.+.+..+ .|+.+. +..+...+.. ..+++ ||.++...
T Consensus 105 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~~~~ 183 (394)
T PRK00411 105 EIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGISSDL 183 (394)
T ss_pred HHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEEECCc
Confidence 99999875322 2234556666666666543 233332 2222222221 12333 56666654
Q ss_pred HHHHhhC-------CCceEeccCCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHh----ccCCchhHHHHHHHh--
Q 039990 215 DVALKMG-------SGKNYELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAK----CKGLPLAARALGGLL-- 281 (1217)
Q Consensus 215 ~v~~~~~-------~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~----~~g~PLai~~~~~~l-- 281 (1217)
.+..... ....+.+++++.++..+++..++...... ..-..++.+.|++. .|..+.|+.++-...
T Consensus 184 ~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~--~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~ 261 (394)
T PRK00411 184 TFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYP--GVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLI 261 (394)
T ss_pred chhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhccc--CCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 4332221 12467899999999999999886321100 01112334444444 455777777654322
Q ss_pred h---cC--CChhHHHHHHhhccCCCCCCCCchHHHHHhhcCCChhHHHHHHHhhcCCC--CcccChHHHHHH--HHHhCC
Q 039990 282 R---SK--QRVDEWRAILNSKIWDLEDEIEIPSVLKLSYHHLPSHLKRCFAYCAILPK--DYEFQEEELVLL--WIAEGF 352 (1217)
Q Consensus 282 ~---~~--~~~~~w~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~f~~~~~fp~--~~~i~~~~li~~--w~~~g~ 352 (1217)
+ +. -+.+.+.++.+.. -.....-.+..||.+.|..+..++..-+ ...+...++... .+++.+
T Consensus 262 a~~~~~~~I~~~~v~~a~~~~---------~~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~ 332 (394)
T PRK00411 262 AEREGSRKVTEEDVRKAYEKS---------EIVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEEL 332 (394)
T ss_pred HHHcCCCCcCHHHHHHHHHHH---------HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHc
Confidence 1 11 1245555555542 1233456789999999987766653321 123444444432 222221
Q ss_pred cccccccccHHHHHHHHHHHHHhccCCcc
Q 039990 353 IQQSKYSKQLEDWGSEYFHDLLSRSMFQK 381 (1217)
Q Consensus 353 i~~~~~~~~~~~~~~~~l~~L~~~sl~~~ 381 (1217)
-.. ........+|+++|.+.+++..
T Consensus 333 ~~~----~~~~~~~~~~l~~L~~~glI~~ 357 (394)
T PRK00411 333 GYE----PRTHTRFYEYINKLDMLGIINT 357 (394)
T ss_pred CCC----cCcHHHHHHHHHHHHhcCCeEE
Confidence 110 0112345668899999999875
No 26
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.85 E-value=4.2e-08 Score=109.45 Aligned_cols=271 Identities=14% Similarity=0.109 Sum_probs=143.9
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCcccHHHHHHHHH
Q 039990 78 EPAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDFDILRISKAIL 157 (1217)
Q Consensus 78 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 157 (1217)
-.+|+|+++.++.+...+......+ .....+.|+|++|+|||++|+.+++. ....+ .++... .......+..++
T Consensus 24 ~~~~vG~~~~~~~l~~~l~~~~~~~-~~~~~~ll~GppG~GKT~la~~ia~~-l~~~~---~~~~~~-~~~~~~~l~~~l 97 (328)
T PRK00080 24 LDEFIGQEKVKENLKIFIEAAKKRG-EALDHVLLYGPPGLGKTTLANIIANE-MGVNI---RITSGP-ALEKPGDLAAIL 97 (328)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHhcC-CCCCcEEEECCCCccHHHHHHHHHHH-hCCCe---EEEecc-cccChHHHHHHH
Confidence 3579999999999888775421111 33467889999999999999999886 32221 122211 122222333444
Q ss_pred HHhhcCCC-CCCChhHH----HHHHHHHHHhcC-----cCHHHHHHhhcccCCCCCCcEEEEEcCchHHHHhh--CCCce
Q 039990 158 ESITRSSC-GLTDLNSV----QLKLKEAVFKKN-----KSYELWQALKSPFMAGAPGSRIIVTTRSMDVALKM--GSGKN 225 (1217)
Q Consensus 158 ~~l~~~~~-~~~~~~~~----~~~l~~~l~~~~-----~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~v~~~~--~~~~~ 225 (1217)
..+..... -.++.+.+ ...+...+.+.. +....-..+...+ .+.+-|..|||...+.... .....
T Consensus 98 ~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l---~~~~li~at~~~~~l~~~L~sRf~~~ 174 (328)
T PRK00080 98 TNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDL---PPFTLIGATTRAGLLTSPLRDRFGIV 174 (328)
T ss_pred HhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecC---CCceEEeecCCcccCCHHHHHhcCee
Confidence 44432211 01122221 122222222210 0000000010011 1245566677754332222 12357
Q ss_pred EeccCCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhccCCchhHHHHHHHhhcCCChhHHHHHHhhccCCCCCCC
Q 039990 226 YELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGLPLAARALGGLLRSKQRVDEWRAILNSKIWDLEDEI 305 (1217)
Q Consensus 226 ~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~~~~~~~~~~~~~~ 305 (1217)
+++++++.++..+++.+.+.... . .-.++.+..|++.|+|.|-.+..+...+ ..|....+. ..-...
T Consensus 175 ~~l~~~~~~e~~~il~~~~~~~~-~---~~~~~~~~~ia~~~~G~pR~a~~~l~~~------~~~a~~~~~---~~I~~~ 241 (328)
T PRK00080 175 QRLEFYTVEELEKIVKRSARILG-V---EIDEEGALEIARRSRGTPRIANRLLRRV------RDFAQVKGD---GVITKE 241 (328)
T ss_pred eecCCCCHHHHHHHHHHHHHHcC-C---CcCHHHHHHHHHHcCCCchHHHHHHHHH------HHHHHHcCC---CCCCHH
Confidence 89999999999999998875432 1 2234678999999999995444333322 122221110 000111
Q ss_pred ---CchHHHHHhhcCCChhHHHHHH-HhhcCCCCcccChHHHHHHHHHhCCcccccccccHHHHHHHHHH-HHHhccCCc
Q 039990 306 ---EIPSVLKLSYHHLPSHLKRCFA-YCAILPKDYEFQEEELVLLWIAEGFIQQSKYSKQLEDWGSEYFH-DLLSRSMFQ 380 (1217)
Q Consensus 306 ---~i~~~l~~sy~~L~~~~k~~f~-~~~~fp~~~~i~~~~li~~w~~~g~i~~~~~~~~~~~~~~~~l~-~L~~~sl~~ 380 (1217)
.....+...|..|++..+..+. ....|+.+ .+..+.+.... | . ..+.+++.++ .|++.+|++
T Consensus 242 ~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l---g---~------~~~~~~~~~e~~Li~~~li~ 308 (328)
T PRK00080 242 IADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL---G---E------ERDTIEDVYEPYLIQQGFIQ 308 (328)
T ss_pred HHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH---C---C------CcchHHHHhhHHHHHcCCcc
Confidence 2334456677889988888776 66677655 45555443322 1 1 1234455566 899999997
Q ss_pred ccC
Q 039990 381 KSS 383 (1217)
Q Consensus 381 ~~~ 383 (1217)
...
T Consensus 309 ~~~ 311 (328)
T PRK00080 309 RTP 311 (328)
T ss_pred cCC
Confidence 543
No 27
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.82 E-value=7.7e-08 Score=106.95 Aligned_cols=269 Identities=14% Similarity=0.073 Sum_probs=140.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCcccHHHHHHHHHH
Q 039990 79 PAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDFDILRISKAILE 158 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 158 (1217)
.+|||+++.++++..++....... .....+.++|++|+|||+||+.+++. ....+ ..+......... .+...+.
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~-~~~~~~ll~Gp~G~GKT~la~~ia~~-~~~~~---~~~~~~~~~~~~-~l~~~l~ 77 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQ-EALDHLLLYGPPGLGKTTLAHIIANE-MGVNL---KITSGPALEKPG-DLAAILT 77 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcC-CCCCeEEEECCCCCCHHHHHHHHHHH-hCCCE---EEeccchhcCch-hHHHHHH
Confidence 469999999999988886432211 33456889999999999999999876 32222 122221111111 2222233
Q ss_pred HhhcCCC-CCCChhH----HHHHHHHHHHhcCc-----CHHHHHHhhcccCCCCCCcEEEEEcCchHHHHhh--CCCceE
Q 039990 159 SITRSSC-GLTDLNS----VQLKLKEAVFKKNK-----SYELWQALKSPFMAGAPGSRIIVTTRSMDVALKM--GSGKNY 226 (1217)
Q Consensus 159 ~l~~~~~-~~~~~~~----~~~~l~~~l~~~~~-----~~~~~~~l~~~~~~~~~gs~ilvTtR~~~v~~~~--~~~~~~ 226 (1217)
.+..... -.++.+. ....+...+.+... ....-..+.... .+.+-|.+|||...+.... .....+
T Consensus 78 ~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~---~~~~li~~t~~~~~l~~~l~sR~~~~~ 154 (305)
T TIGR00635 78 NLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDL---PPFTLVGATTRAGMLTSPLRDRFGIIL 154 (305)
T ss_pred hcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecC---CCeEEEEecCCccccCHHHHhhcceEE
Confidence 3332210 0111121 12222222222200 000000011111 2355566677764443221 123568
Q ss_pred eccCCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhccCCchhHHHHHHHhhcCCChhHHHHHHhhccCCCCCCC-
Q 039990 227 ELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGLPLAARALGGLLRSKQRVDEWRAILNSKIWDLEDEI- 305 (1217)
Q Consensus 227 ~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~~~~~~~~~~~~~~- 305 (1217)
++++++.++..+++.+.+.... . .-.++.+..|++.|+|.|-.+..++..+ |..+.... ...-..+
T Consensus 155 ~l~~l~~~e~~~il~~~~~~~~-~---~~~~~al~~ia~~~~G~pR~~~~ll~~~--------~~~a~~~~-~~~it~~~ 221 (305)
T TIGR00635 155 RLEFYTVEELAEIVSRSAGLLN-V---EIEPEAALEIARRSRGTPRIANRLLRRV--------RDFAQVRG-QKIINRDI 221 (305)
T ss_pred EeCCCCHHHHHHHHHHHHHHhC-C---CcCHHHHHHHHHHhCCCcchHHHHHHHH--------HHHHHHcC-CCCcCHHH
Confidence 9999999999999998875321 1 1224677899999999996654444332 11110000 0000000
Q ss_pred --CchHHHHHhhcCCChhHHHHHH-HhhcCCCCcccChHHHHHHHHHhCCcccccccccHHHHHHHHHH-HHHhccCCcc
Q 039990 306 --EIPSVLKLSYHHLPSHLKRCFA-YCAILPKDYEFQEEELVLLWIAEGFIQQSKYSKQLEDWGSEYFH-DLLSRSMFQK 381 (1217)
Q Consensus 306 --~i~~~l~~sy~~L~~~~k~~f~-~~~~fp~~~~i~~~~li~~w~~~g~i~~~~~~~~~~~~~~~~l~-~L~~~sl~~~ 381 (1217)
.....+...|..++++.+..+. ..+.+..+ .+..+.+.... | .....++..++ .|++++|+..
T Consensus 222 v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l---g---------~~~~~~~~~~e~~Li~~~li~~ 288 (305)
T TIGR00635 222 ALKALEMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL---G---------EDADTIEDVYEPYLLQIGFLQR 288 (305)
T ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh---C---------CCcchHHHhhhHHHHHcCCccc
Confidence 1222245568889988888776 45667543 44443333221 1 11234566678 6999999975
Q ss_pred c
Q 039990 382 S 382 (1217)
Q Consensus 382 ~ 382 (1217)
.
T Consensus 289 ~ 289 (305)
T TIGR00635 289 T 289 (305)
T ss_pred C
Confidence 3
No 28
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.82 E-value=9.2e-07 Score=101.40 Aligned_cols=289 Identities=11% Similarity=0.063 Sum_probs=161.1
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhccccCCC------CCeEEEEeCCcccHHH
Q 039990 78 EPAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDF------KPKAWVCVSDDFDILR 151 (1217)
Q Consensus 78 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F------~~~~wv~~~~~~~~~~ 151 (1217)
+..++||++++++|...+...-.+ .....+.|+|++|+|||++|++++++. .... -..+||.+....+..+
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~~--~~~~~i~I~G~~GtGKT~l~~~~~~~l-~~~~~~~~~~~~~v~in~~~~~~~~~ 90 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILRG--SRPSNVFIYGKTGTGKTAVTKYVMKEL-EEAAEDRDVRVVTVYVNCQILDTLYQ 90 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHcC--CCCCcEEEECCCCCCHHHHHHHHHHHH-HHHhhccCCceEEEEEECCCCCCHHH
Confidence 347999999999999998652111 233578999999999999999999763 2111 1356777777677788
Q ss_pred HHHHHHHHhhc---CCC-CCCChhHHHHHHHHHHHhc-------CcCHHHH--------HHhhccc-CCCC--CCcEEEE
Q 039990 152 ISKAILESITR---SSC-GLTDLNSVQLKLKEAVFKK-------NKSYELW--------QALKSPF-MAGA--PGSRIIV 209 (1217)
Q Consensus 152 ~~~~i~~~l~~---~~~-~~~~~~~~~~~l~~~l~~~-------~~~~~~~--------~~l~~~~-~~~~--~gs~ilv 209 (1217)
++..|++++.. ... ...+..+....+.+.+... .|+.+.. ..+.... .... ....+|.
T Consensus 91 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~ 170 (365)
T TIGR02928 91 VLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIG 170 (365)
T ss_pred HHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEE
Confidence 99999999842 211 1123344444555554322 3333333 1221110 1111 2334455
Q ss_pred EcCchHHHHhhC-------CCceEeccCCChHHHHHHHHHHHhCC-CCCCCCCchhhHHHHHHHhccCCc-hhHHHHHHH
Q 039990 210 TTRSMDVALKMG-------SGKNYELKHLSDDDCWSVFLNHAFEG-IDTGTQGNFESTRQRVVAKCKGLP-LAARALGGL 280 (1217)
Q Consensus 210 TtR~~~v~~~~~-------~~~~~~l~~l~~~~~~~lf~~~~~~~-~~~~~~~~~~~~~~~i~~~~~g~P-Lai~~~~~~ 280 (1217)
+|........+. ....+.+++++.+|..+++..++... ......++..+.+.+++....|.| .|+.++-..
T Consensus 171 i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a 250 (365)
T TIGR02928 171 ISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVA 250 (365)
T ss_pred EECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 554443321111 12468899999999999999887311 111122222334455666666777 443332221
Q ss_pred h--h--c-C--CChhHHHHHHhhccCCCCCCCCchHHHHHhhcCCChhHHHHHHHhhcCC--CCcccChHHHHHHH--HH
Q 039990 281 L--R--S-K--QRVDEWRAILNSKIWDLEDEIEIPSVLKLSYHHLPSHLKRCFAYCAILP--KDYEFQEEELVLLW--IA 349 (1217)
Q Consensus 281 l--~--~-~--~~~~~w~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~f~~~~~fp--~~~~i~~~~li~~w--~~ 349 (1217)
. . . . -+.+..+++.+.. -.....-+...||.+.|..+..++..- ++..+...++...+ ++
T Consensus 251 ~~~a~~~~~~~it~~~v~~a~~~~---------~~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~ 321 (365)
T TIGR02928 251 GEIAEREGAERVTEDHVEKAQEKI---------EKDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEVC 321 (365)
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHH---------HHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHH
Confidence 1 1 1 1 1234444444331 123345577899999887766654321 33345566665533 12
Q ss_pred hCCcccccccccHHHHHHHHHHHHHhccCCccc
Q 039990 350 EGFIQQSKYSKQLEDWGSEYFHDLLSRSMFQKS 382 (1217)
Q Consensus 350 ~g~i~~~~~~~~~~~~~~~~l~~L~~~sl~~~~ 382 (1217)
+.+ . ..........+++..|...|++...
T Consensus 322 ~~~-~---~~~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 322 EDI-G---VDPLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred Hhc-C---CCCCcHHHHHHHHHHHHhcCCeEEE
Confidence 211 1 1112346677889999999999864
No 29
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.80 E-value=4.4e-07 Score=105.44 Aligned_cols=286 Identities=17% Similarity=0.223 Sum_probs=177.9
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCcc-cHHHHHHHHH
Q 039990 79 PAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDF-DILRISKAIL 157 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~ 157 (1217)
...|-|.. +++.|... ...|.+.|..++|.|||||+.+.+.. ...=..+.|.+.+... +...+...++
T Consensus 19 ~~~v~R~r----L~~~L~~~-----~~~RL~li~APAGfGKttl~aq~~~~--~~~~~~v~Wlslde~dndp~rF~~yLi 87 (894)
T COG2909 19 DNYVVRPR----LLDRLRRA-----NDYRLILISAPAGFGKTTLLAQWREL--AADGAAVAWLSLDESDNDPARFLSYLI 87 (894)
T ss_pred ccccccHH----HHHHHhcC-----CCceEEEEeCCCCCcHHHHHHHHHHh--cCcccceeEeecCCccCCHHHHHHHHH
Confidence 34455554 44555443 45689999999999999999997652 2223468999987654 6788888888
Q ss_pred HHhhcCCCCCCC-------------hhHHHHHHHHHHHhc-------Cc------CHHHHHHhhcccCCCCCCcEEEEEc
Q 039990 158 ESITRSSCGLTD-------------LNSVQLKLKEAVFKK-------NK------SYELWQALKSPFMAGAPGSRIIVTT 211 (1217)
Q Consensus 158 ~~l~~~~~~~~~-------------~~~~~~~l~~~l~~~-------~~------~~~~~~~l~~~~~~~~~gs~ilvTt 211 (1217)
..++...+...+ ...+...+...+..- .| +...-+.+.-.+...+.+-.+||||
T Consensus 88 ~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~S 167 (894)
T COG2909 88 AALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTS 167 (894)
T ss_pred HHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEe
Confidence 888754432222 222222332222211 11 1122223333444556788999999
Q ss_pred CchHHHHh--h-CCCceEec----cCCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhccCCchhHHHHHHHhhcC
Q 039990 212 RSMDVALK--M-GSGKNYEL----KHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGLPLAARALGGLLRSK 284 (1217)
Q Consensus 212 R~~~v~~~--~-~~~~~~~l----~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~ 284 (1217)
|...-... + -.+...++ =.++.+|+-++|...... +-....++.+.+..+|.+-|+..++=.++++
T Consensus 168 R~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l-------~Ld~~~~~~L~~~teGW~~al~L~aLa~~~~ 240 (894)
T COG2909 168 RSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSL-------PLDAADLKALYDRTEGWAAALQLIALALRNN 240 (894)
T ss_pred ccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCC-------CCChHHHHHHHhhcccHHHHHHHHHHHccCC
Confidence 98653211 1 11223333 368899999999886411 1223458899999999999999999888844
Q ss_pred CChhHHHHHHhhccCCCCCCCCchH-HHHHhhcCCChhHHHHHHHhhcCCCCcccChHHHHHHHHHhCCcccccccccHH
Q 039990 285 QRVDEWRAILNSKIWDLEDEIEIPS-VLKLSYHHLPSHLKRCFAYCAILPKDYEFQEEELVLLWIAEGFIQQSKYSKQLE 363 (1217)
Q Consensus 285 ~~~~~w~~~~~~~~~~~~~~~~i~~-~l~~sy~~L~~~~k~~f~~~~~fp~~~~i~~~~li~~w~~~g~i~~~~~~~~~~ 363 (1217)
.+.+.-...+... ...+.+ ..+--++.||+++|..++.+|+++. +. +.|+..-. -+
T Consensus 241 ~~~~q~~~~LsG~------~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~---f~-~eL~~~Lt-------------g~ 297 (894)
T COG2909 241 TSAEQSLRGLSGA------ASHLSDYLVEEVLDRLPPELRDFLLQTSVLSR---FN-DELCNALT-------------GE 297 (894)
T ss_pred CcHHHHhhhccch------HHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHH---hh-HHHHHHHh-------------cC
Confidence 3333333322210 001111 2345689999999999999999953 22 23333221 12
Q ss_pred HHHHHHHHHHHhccCCcc-cCCCCCeEEEchhHHHHHHHHhcC
Q 039990 364 DWGSEYFHDLLSRSMFQK-SSNNESKFVMHDLVHDLAQWASGD 405 (1217)
Q Consensus 364 ~~~~~~l~~L~~~sl~~~-~~~~~~~~~mh~lv~~~~~~~~~~ 405 (1217)
+-+...+++|.+++++-. -++....|+.|.+..||.+..-..
T Consensus 298 ~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 298 ENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred CcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhcc
Confidence 346677999999998874 455567999999999999765443
No 30
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.78 E-value=1.1e-10 Score=122.75 Aligned_cols=274 Identities=19% Similarity=0.275 Sum_probs=140.0
Q ss_pred CccEEEEccCCCccc-----cCCCCCcccEEEEccCCCccccCCCCCCCccceeecccccccccccccccc-ccceeeec
Q 039990 750 SLEEIVIAGCMHLAV-----SLPSLPALCTMEIDGCKRLVCDGPSESKSLNEMALCNISKFENWSMENLVR-FGFYSVDT 823 (1217)
Q Consensus 750 ~L~~L~l~~c~~l~~-----~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~-~~~l~~L~ 823 (1217)
.|+.|.+.||..... ...++|+++.|.+.+|..+. +..+..+.. ..+++.+.
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iT----------------------d~s~~sla~~C~~l~~l~ 196 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKIT----------------------DSSLLSLARYCRKLRHLN 196 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceecc----------------------HHHHHHHHHhcchhhhhh
Confidence 567777777754432 12235556655555555433 333222222 34455555
Q ss_pred cccCCCccccccc-cccCCCcccEEEEeccCCcccccccCCC---CCccEEEecccCcccccccCCCCCCCCCccccccc
Q 039990 824 SKDCNALTSLTDG-MIHNNVRLEVLRIIGCHSLKSIAREHLP---SSLKEIELEYCEIQQCVLDDGENSCASPSVLEKNI 899 (1217)
Q Consensus 824 l~~c~~l~~l~~~-~~~~l~~L~~L~l~~c~~l~~i~~~~~~---~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~~ 899 (1217)
+..|..++...-. ....+++|++|+++.|+.++.-....+. ..++.+...+|...+
T Consensus 197 L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~-------------------- 256 (483)
T KOG4341|consen 197 LHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELE-------------------- 256 (483)
T ss_pred hcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhccccccc--------------------
Confidence 5555555554322 3556888888888888877652111111 113333333333221
Q ss_pred CCCCCcccccccceEeccCCCCcccccCCCCCCCccEEeecCCCCCcccc--cccccccCcceEeeccCCCcccc--ccc
Q 039990 900 NNSSSSTYLDLESLSVQSCPSLTRLWSSGRLPVTLKCIQIEDCSNFKVLT--SECQLSVAVEELTIDSCSNIESI--AER 975 (1217)
Q Consensus 900 ~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~--~~~~~l~~L~~L~l~~~~~l~~l--~~~ 975 (1217)
++ .+.........+.++++..|+.++... ..-.++..||.|+.++|..+... +.-
T Consensus 257 ----------le-----------~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aL 315 (483)
T KOG4341|consen 257 ----------LE-----------ALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWAL 315 (483)
T ss_pred ----------HH-----------HHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHH
Confidence 00 000011111134444555554444221 11224567777777777765443 233
Q ss_pred cCCCCcccEEEEcCCCCCcccccc--CCCCCCcceEEecCCCCCcccC---CCCCCCCcceEEEccCcCcccC------C
Q 039990 976 FHDDACLRSIRLSYCKNLKSLPKG--LNNLSHLHRRSIQGCHNLVSLP---EDALPSNVVDVSIEDCDKLKAP------L 1044 (1217)
Q Consensus 976 ~~~l~~L~~L~L~~c~~l~~l~~~--l~~l~~L~~L~l~~c~~l~~l~---~~~~~~~L~~L~l~~~~~l~~~------~ 1044 (1217)
...+++|+.|.++.|..++..-.. -.+++.|+.+++.+|..++.-. ...-++.|+.|.+++|..++.. .
T Consensus 316 g~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~ 395 (483)
T KOG4341|consen 316 GQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSS 395 (483)
T ss_pred hcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhh
Confidence 344678888888888776655211 1456778888888876655431 1222355666666666555541 0
Q ss_pred CCCCCCCcceEeeccCCCccccCCC--CCCCCCCeEEecCCCCC
Q 039990 1045 PTGKLSSLQLLTLIECPGIVFFPEE--GLSTNLTDLEISGDNIY 1086 (1217)
Q Consensus 1045 ~~~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~~~~~ 1086 (1217)
....+..|+.|.+++|+.+..-... ..+++|+.+++.+|...
T Consensus 396 ~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~v 439 (483)
T KOG4341|consen 396 SSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDV 439 (483)
T ss_pred ccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhh
Confidence 1134556667777776665432221 34556666666666555
No 31
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.74 E-value=3.2e-10 Score=127.90 Aligned_cols=161 Identities=17% Similarity=0.162 Sum_probs=71.9
Q ss_pred CCcceEeeccCCCcc----ccCCC-CCCCCCCeEEecCCCCCccccc---cccccCCcccceeeccCCCcccccc-cccc
Q 039990 1050 SSLQLLTLIECPGIV----FFPEE-GLSTNLTDLEISGDNIYKPLVK---WGFDKFSSLRKHCINRCSDAVSFPE-VEKG 1120 (1217)
Q Consensus 1050 ~~L~~L~l~~c~~l~----~~~~~-~~~~~L~~L~l~~~~~~~~~~~---~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~ 1120 (1217)
++|++|++++|.... .+... ..+++|++|++++|...+.... ..+..+++|++|++++|..-..-.. ....
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 216 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET 216 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence 556666666554221 01100 2234566666666655421110 1233445677777776642211000 0112
Q ss_pred CCCCCCcceEeecCCCCCcccCcccc-----CCcccccccccccccCccc-----CCCC-CCCCccceEeccCCcchHHh
Q 039990 1121 VILPTSLTLIRISDFPKLERLSSKGF-----HYLLSLEQLKVSSCPNFTS-----FPEA-GFPSSLLFLDIQGCPLLENK 1189 (1217)
Q Consensus 1121 ~~~~~~L~~L~l~~c~~l~~l~~~~~-----~~l~~L~~L~l~~c~~l~~-----lp~~-~~~~sL~~L~l~~c~~l~~~ 1189 (1217)
+..+++|++|++++| .+.......+ ...+.|++|++++| .++. +... ...++|+.+++++|.--.+.
T Consensus 217 ~~~~~~L~~L~ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~ 294 (319)
T cd00116 217 LASLKSLEVLNLGDN-NLTDAGAAALASALLSPNISLLTLSLSCN-DITDDGAKDLAEVLAEKESLLELDLRGNKFGEEG 294 (319)
T ss_pred hcccCCCCEEecCCC-cCchHHHHHHHHHHhccCCCceEEEccCC-CCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHH
Confidence 334567777777774 3432110111 12367777777777 4431 1111 12367777777776533221
Q ss_pred hcCCCCCCCCcc-cccceEEECCee
Q 039990 1190 FKKGKGQEWPKI-AHIPSVLIGGKS 1213 (1217)
Q Consensus 1190 ~~~~~~~~~~~i-~~i~~~~~~~~~ 1213 (1217)
+.. ....+... .++..+.+.++.
T Consensus 295 ~~~-~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 295 AQL-LAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHH-HHHHHhhcCCchhhcccCCCC
Confidence 110 11112222 356666665554
No 32
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.69 E-value=1.1e-07 Score=104.11 Aligned_cols=70 Identities=23% Similarity=0.510 Sum_probs=45.3
Q ss_pred CCcccEEEEcCCCCCccccccCCCCCCcceEEecCCCCCcccCCCCCCCCcceEEEccCcCcccCCCCCCCCCcceEeec
Q 039990 979 DACLRSIRLSYCKNLKSLPKGLNNLSHLHRRSIQGCHNLVSLPEDALPSNVVDVSIEDCDKLKAPLPTGKLSSLQLLTLI 1058 (1217)
Q Consensus 979 l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~ 1058 (1217)
+.+++.|++++| .+..+|. -.++|+.|.+++|..++.+|. .+|++|+.|++++|..+.. + .++|+.|++.
T Consensus 51 ~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~-~LP~nLe~L~Ls~Cs~L~s-L----P~sLe~L~L~ 120 (426)
T PRK15386 51 ARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPG-SIPEGLEKLTVCHCPEISG-L----PESVRSLEIK 120 (426)
T ss_pred hcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCc-hhhhhhhheEccCcccccc-c----ccccceEEeC
Confidence 567788888887 5777762 234688888888888777764 3456677777777654443 1 2345555554
No 33
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.69 E-value=3.5e-10 Score=118.96 Aligned_cols=278 Identities=18% Similarity=0.237 Sum_probs=178.3
Q ss_pred ccceEeccCCCCcc--cccCCCCCCCccEEeecCCCCCccc--ccccccccCcceEeeccCCCccccccc--cCCCCccc
Q 039990 910 LESLSVQSCPSLTR--LWSSGRLPVTLKCIQIEDCSNFKVL--TSECQLSVAVEELTIDSCSNIESIAER--FHDDACLR 983 (1217)
Q Consensus 910 L~~L~l~~~~~l~~--l~~~~~~~~~L~~L~l~~~~~l~~~--~~~~~~l~~L~~L~l~~~~~l~~l~~~--~~~l~~L~ 983 (1217)
+++|.+.+|..... +-......++++.|.+++|.+++.. -+.-..++.|+.|++..|..++..... ...+++|+
T Consensus 140 lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~ 219 (483)
T KOG4341|consen 140 LKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLK 219 (483)
T ss_pred cccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHH
Confidence 77888887765432 2122244557888888888766532 222235677888888888877655322 33478888
Q ss_pred EEEEcCCCCCcc--ccccCCCCCCcceEEecCCCCCcc--cC-CCCCCCCcceEEEccCcCcccCCCC----CCCCCcce
Q 039990 984 SIRLSYCKNLKS--LPKGLNNLSHLHRRSIQGCHNLVS--LP-EDALPSNVVDVSIEDCDKLKAPLPT----GKLSSLQL 1054 (1217)
Q Consensus 984 ~L~L~~c~~l~~--l~~~l~~l~~L~~L~l~~c~~l~~--l~-~~~~~~~L~~L~l~~~~~l~~~~~~----~~l~~L~~ 1054 (1217)
+|+++.|+.+.. +..-..++..++.+...||..+.. +- .......+..+++..|..++. ... ..+..|+.
T Consensus 220 ~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD-~~~~~i~~~c~~lq~ 298 (483)
T KOG4341|consen 220 YLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTD-EDLWLIACGCHALQV 298 (483)
T ss_pred HhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccc-hHHHHHhhhhhHhhh
Confidence 888888877664 111234455677777777765442 11 112234566677778877776 222 56888999
Q ss_pred EeeccCCCccccCCC---CCCCCCCeEEecCCCCCcccccccc-ccCCcccceeeccCCCccccccccccCCCCCCcceE
Q 039990 1055 LTLIECPGIVFFPEE---GLSTNLTDLEISGDNIYKPLVKWGF-DKFSSLRKHCINRCSDAVSFPEVEKGVILPTSLTLI 1130 (1217)
Q Consensus 1055 L~l~~c~~l~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L 1130 (1217)
|..++|..+...+.. ...++|+.|-+.+|.......-..+ .+.+.|+.|++..|.....-.- ...-..++.|+.|
T Consensus 299 l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL-~sls~~C~~lr~l 377 (483)
T KOG4341|consen 299 LCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTL-ASLSRNCPRLRVL 377 (483)
T ss_pred hcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhH-hhhccCCchhccC
Confidence 999998887655433 3478899999999987644322122 4678899999998866543311 1112367889999
Q ss_pred eecCCCCCcccCc----cccCCcccccccccccccCcccCCCC--CCCCccceEeccCCcchHHh
Q 039990 1131 RISDFPKLERLSS----KGFHYLLSLEQLKVSSCPNFTSFPEA--GFPSSLLFLDIQGCPLLENK 1189 (1217)
Q Consensus 1131 ~l~~c~~l~~l~~----~~~~~l~~L~~L~l~~c~~l~~lp~~--~~~~sL~~L~l~~c~~l~~~ 1189 (1217)
.++.|..++.-.. ..-..+..|+.+.+.+||.+..-... ..+++|+.+++.+|....+.
T Consensus 378 slshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~ 442 (483)
T KOG4341|consen 378 SLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKE 442 (483)
T ss_pred ChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhh
Confidence 9998877665411 22234667888999999888764322 45678999999888765544
No 34
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.68 E-value=9.5e-08 Score=102.28 Aligned_cols=186 Identities=19% Similarity=0.201 Sum_probs=93.8
Q ss_pred cccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCcccHHHHH-------
Q 039990 81 VYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDFDILRIS------- 153 (1217)
Q Consensus 81 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~~~~~~~~------- 153 (1217)
|+||++++++|.+++..+. .+.+.|+|+.|+|||+|++++.+. .+..-..++|+...+........
T Consensus 1 F~gR~~el~~l~~~l~~~~------~~~~~l~G~rg~GKTsLl~~~~~~-~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~ 73 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGP------SQHILLYGPRGSGKTSLLKEFINE-LKEKGYKVVYIDFLEESNESSLRSFIEETS 73 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--------SSEEEEEESTTSSHHHHHHHHHHH-CT--EECCCHHCCTTBSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhc------CcEEEEEcCCcCCHHHHHHHHHHH-hhhcCCcEEEEecccchhhhHHHHHHHHHH
Confidence 7999999999999987642 258999999999999999999886 32222245555544433221111
Q ss_pred --HHHHHHhhcCCCC----------CCChhHHHHHHHHHHHhc-------CcC-----------HHHHHHhhcccCC--C
Q 039990 154 --KAILESITRSSCG----------LTDLNSVQLKLKEAVFKK-------NKS-----------YELWQALKSPFMA--G 201 (1217)
Q Consensus 154 --~~i~~~l~~~~~~----------~~~~~~~~~~l~~~l~~~-------~~~-----------~~~~~~l~~~~~~--~ 201 (1217)
..+.+.+...... ..........+.+.+... .|+ ......+...+.. .
T Consensus 74 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~ 153 (234)
T PF01637_consen 74 LADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLS 153 (234)
T ss_dssp HHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccc
Confidence 1122222211110 111223333444444433 111 1222233333322 1
Q ss_pred CCCcEEEEEcCchHHHHh--------hCCCceEeccCCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhccCCchh
Q 039990 202 APGSRIIVTTRSMDVALK--------MGSGKNYELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGLPLA 273 (1217)
Q Consensus 202 ~~gs~ilvTtR~~~v~~~--------~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 273 (1217)
.....+|++.....+... .+....+.+++++.+++++++...+-.. ... +...+..++|++.+||+|..
T Consensus 154 ~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~--~~~-~~~~~~~~~i~~~~gG~P~~ 230 (234)
T PF01637_consen 154 QQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL--IKL-PFSDEDIEEIYSLTGGNPRY 230 (234)
T ss_dssp -TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC---------HHHHHHHHHHHTT-HHH
T ss_pred cCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh--hcc-cCCHHHHHHHHHHhCCCHHH
Confidence 233344455544444433 1223469999999999999999976332 111 22355679999999999988
Q ss_pred HHH
Q 039990 274 ARA 276 (1217)
Q Consensus 274 i~~ 276 (1217)
|..
T Consensus 231 l~~ 233 (234)
T PF01637_consen 231 LQE 233 (234)
T ss_dssp HHH
T ss_pred Hhc
Confidence 764
No 35
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.64 E-value=3e-09 Score=120.01 Aligned_cols=153 Identities=14% Similarity=0.018 Sum_probs=77.4
Q ss_pred CCcceEEEccCcCccc-----CCCCCCCCCcceEeeccCCCcc----ccCCC-CCCCCCCeEEecCCCCCcccc---ccc
Q 039990 1027 SNVVDVSIEDCDKLKA-----PLPTGKLSSLQLLTLIECPGIV----FFPEE-GLSTNLTDLEISGDNIYKPLV---KWG 1093 (1217)
Q Consensus 1027 ~~L~~L~l~~~~~l~~-----~~~~~~l~~L~~L~l~~c~~l~----~~~~~-~~~~~L~~L~l~~~~~~~~~~---~~~ 1093 (1217)
++|+.|++++|..... ...+..+++|++|++++|..-. .++.. ...++|++|++++|....... ...
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 216 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET 216 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence 4555555555543311 0111345567777776654221 11100 123577777777776542111 113
Q ss_pred cccCCcccceeeccCCCcc----ccccccccCCCCCCcceEeecCCCCCc-----ccCccccCCcccccccccccccCcc
Q 039990 1094 FDKFSSLRKHCINRCSDAV----SFPEVEKGVILPTSLTLIRISDFPKLE-----RLSSKGFHYLLSLEQLKVSSCPNFT 1164 (1217)
Q Consensus 1094 ~~~l~~L~~L~l~~~~~l~----~~~~~~~~~~~~~~L~~L~l~~c~~l~-----~l~~~~~~~l~~L~~L~l~~c~~l~ 1164 (1217)
+..+++|++|++++|.... .+.. ......+.|++|++++| .++ .+. ..+..+++|+++++++| .++
T Consensus 217 ~~~~~~L~~L~ls~n~l~~~~~~~l~~--~~~~~~~~L~~L~l~~n-~i~~~~~~~l~-~~~~~~~~L~~l~l~~N-~l~ 291 (319)
T cd00116 217 LASLKSLEVLNLGDNNLTDAGAAALAS--ALLSPNISLLTLSLSCN-DITDDGAKDLA-EVLAEKESLLELDLRGN-KFG 291 (319)
T ss_pred hcccCCCCEEecCCCcCchHHHHHHHH--HHhccCCCceEEEccCC-CCCcHHHHHHH-HHHhcCCCccEEECCCC-CCc
Confidence 4566778888887764321 1111 00012467888888875 443 222 23455577888888888 454
Q ss_pred cCCCC------CCC-CccceEeccCCc
Q 039990 1165 SFPEA------GFP-SSLLFLDIQGCP 1184 (1217)
Q Consensus 1165 ~lp~~------~~~-~sL~~L~l~~c~ 1184 (1217)
.-+.. ... +.|+.+++.+.|
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 292 EEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 33211 112 567777776654
No 36
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.58 E-value=5.5e-06 Score=90.43 Aligned_cols=171 Identities=16% Similarity=0.124 Sum_probs=102.3
Q ss_pred EEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCcccHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHH----
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDFDILRISKAILESITRSSCGLTDLNSVQLKLKEAVF---- 182 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~---- 182 (1217)
.++.|+|++|+||||+|+.+++......+ ..+|+ +....+..+++..|+..++.+... .+.......+...+.
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~-~~~~~~~~~l~~~l~~~~~ 120 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQERV-VAAKL-VNTRVDAEDLLRMVAADFGLETEG-RDKAALLRELEDFLIEQFA 120 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCCCCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCCC-CCHHHHHHHHHHHHHHHHh
Confidence 58899999999999999999876321211 12233 334457778899999888765432 222333333333332
Q ss_pred -hc-----CcC-----HHHHHHhhcccC---CCCCCcEEEEEcCchHHHHhhC----------CCceEeccCCChHHHHH
Q 039990 183 -KK-----NKS-----YELWQALKSPFM---AGAPGSRIIVTTRSMDVALKMG----------SGKNYELKHLSDDDCWS 238 (1217)
Q Consensus 183 -~~-----~~~-----~~~~~~l~~~~~---~~~~gs~ilvTtR~~~v~~~~~----------~~~~~~l~~l~~~~~~~ 238 (1217)
++ +|+ ...++.++.... .......|++|.... ....+. ....+++++++.+|..+
T Consensus 121 ~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~ 199 (269)
T TIGR03015 121 AGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREETRE 199 (269)
T ss_pred CCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHHHHH
Confidence 12 121 234555543221 112233456665532 221111 13467899999999999
Q ss_pred HHHHHHhCCCCCCCCCchhhHHHHHHHhccCCchhHHHHHHHh
Q 039990 239 VFLNHAFEGIDTGTQGNFESTRQRVVAKCKGLPLAARALGGLL 281 (1217)
Q Consensus 239 lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l 281 (1217)
++...+...+......-..+..+.|++.++|.|..|..++..+
T Consensus 200 ~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 200 YIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 9888764322111112235788999999999999999888765
No 37
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.47 E-value=5.5e-07 Score=98.65 Aligned_cols=154 Identities=24% Similarity=0.398 Sum_probs=94.3
Q ss_pred ccccceEeccCCCCcccccCCCCCCCccEEeecCCCCCcccccccccccCcceEeeccCCCccccccccCCCCcccEEEE
Q 039990 908 LDLESLSVQSCPSLTRLWSSGRLPVTLKCIQIEDCSNFKVLTSECQLSVAVEELTIDSCSNIESIAERFHDDACLRSIRL 987 (1217)
Q Consensus 908 ~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~L 987 (1217)
.+++.|.+++| .++.+| .+|.+|+.|.+++|..+..+|..+ .++|+.|++++|..+..+|. +|+.|++
T Consensus 52 ~~l~~L~Is~c-~L~sLP---~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~L~L 119 (426)
T PRK15386 52 RASGRLYIKDC-DIESLP---VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVRSLEI 119 (426)
T ss_pred cCCCEEEeCCC-CCcccC---CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccceEEe
Confidence 44888888888 677774 577788888888888888777644 46788888888877766553 4666776
Q ss_pred cCCC--CCccccccCCCCCCcceEEecCCCCC--cccCCCCCCCCcceEEEccCcCcccCCCCCCCCCcceEeeccCCCc
Q 039990 988 SYCK--NLKSLPKGLNNLSHLHRRSIQGCHNL--VSLPEDALPSNVVDVSIEDCDKLKAPLPTGKLSSLQLLTLIECPGI 1063 (1217)
Q Consensus 988 ~~c~--~l~~l~~~l~~l~~L~~L~l~~c~~l--~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~c~~l 1063 (1217)
+++. .+..+|. +|+.|.+.++... ..++ ..+|++|++|++.+|..+..|. .-..+|+.|+++.+...
T Consensus 120 ~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp-~~LPsSLk~L~Is~c~~i~LP~--~LP~SLk~L~ls~n~~~ 190 (426)
T PRK15386 120 KGSATDSIKNVPN------GLTSLSINSYNPENQARID-NLISPSLKTLSLTGCSNIILPE--KLPESLQSITLHIEQKT 190 (426)
T ss_pred CCCCCcccccCcc------hHhheeccccccccccccc-cccCCcccEEEecCCCcccCcc--cccccCcEEEecccccc
Confidence 5422 2344443 4556666443211 1112 2466778888888877665422 12257777777654211
Q ss_pred -cccCCCCCCCCCCeEEecCC
Q 039990 1064 -VFFPEEGLSTNLTDLEISGD 1083 (1217)
Q Consensus 1064 -~~~~~~~~~~~L~~L~l~~~ 1083 (1217)
..++...+++++ .|++.+|
T Consensus 191 sLeI~~~sLP~nl-~L~f~n~ 210 (426)
T PRK15386 191 TWNISFEGFPDGL-DIDLQNS 210 (426)
T ss_pred cccCccccccccc-Eechhhh
Confidence 123333445566 6666665
No 38
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=6.3e-08 Score=102.99 Aligned_cols=37 Identities=14% Similarity=0.117 Sum_probs=23.9
Q ss_pred CCCCcccEEEEcCCCCCcccc--ccCCCCCCcceEEecCC
Q 039990 977 HDDACLRSIRLSYCKNLKSLP--KGLNNLSHLHRRSIQGC 1014 (1217)
Q Consensus 977 ~~l~~L~~L~L~~c~~l~~l~--~~l~~l~~L~~L~l~~c 1014 (1217)
..+.+|+.+.|.+|. ....+ .-...|++++.|+++.|
T Consensus 118 sn~kkL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~N 156 (505)
T KOG3207|consen 118 SNLKKLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSRN 156 (505)
T ss_pred hhHHhhhheeecCcc-ccccchhhhhhhCCcceeecchhh
Confidence 346778888887754 33332 23456788888888874
No 39
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.39 E-value=7.7e-08 Score=96.61 Aligned_cols=125 Identities=22% Similarity=0.237 Sum_probs=93.6
Q ss_pred CCCCcceEeeccCCCccccCCC-CCCCCCCeEEecCCCCCccccccccccCCcccceeeccCCCccccccccccCCCCCC
Q 039990 1048 KLSSLQLLTLIECPGIVFFPEE-GLSTNLTDLEISGDNIYKPLVKWGFDKFSSLRKHCINRCSDAVSFPEVEKGVILPTS 1126 (1217)
Q Consensus 1048 ~l~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 1126 (1217)
.+..|++|++++| .+..+... ...|.++.|+++.|.....- .++.+++|+.|++++| .+..+..+ ...+.+
T Consensus 282 TWq~LtelDLS~N-~I~~iDESvKL~Pkir~L~lS~N~i~~v~---nLa~L~~L~~LDLS~N-~Ls~~~Gw---h~KLGN 353 (490)
T KOG1259|consen 282 TWQELTELDLSGN-LITQIDESVKLAPKLRRLILSQNRIRTVQ---NLAELPQLQLLDLSGN-LLAECVGW---HLKLGN 353 (490)
T ss_pred hHhhhhhcccccc-chhhhhhhhhhccceeEEeccccceeeeh---hhhhcccceEeecccc-hhHhhhhh---HhhhcC
Confidence 4677888888884 45555544 56788999999998776543 3677889999999985 34444431 125678
Q ss_pred cceEeecCCCCCcccCccccCCcccccccccccccCcccCCC---CCCCCccceEeccCCc
Q 039990 1127 LTLIRISDFPKLERLSSKGFHYLLSLEQLKVSSCPNFTSFPE---AGFPSSLLFLDIQGCP 1184 (1217)
Q Consensus 1127 L~~L~l~~c~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~lp~---~~~~~sL~~L~l~~c~ 1184 (1217)
.+.|.+++ |.++++. +++.+.+|..|++++| +|+.+.+ .|.+|-|+++.+.++|
T Consensus 354 IKtL~La~-N~iE~LS--GL~KLYSLvnLDl~~N-~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 354 IKTLKLAQ-NKIETLS--GLRKLYSLVNLDLSSN-QIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred Eeeeehhh-hhHhhhh--hhHhhhhheecccccc-chhhHHHhcccccccHHHHHhhcCCC
Confidence 88999998 8888886 8889999999999998 7777653 2667888888888887
No 40
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.35 E-value=2.8e-06 Score=91.29 Aligned_cols=284 Identities=16% Similarity=0.194 Sum_probs=174.7
Q ss_pred CcEEEEEEccCCchHHHHHHHHHhccccCCCC-CeEEEEeCCcccHHHHHHHHHHHhhcCCCC-CCChhHHHHHHHHH--
Q 039990 105 NFRVIPLVGMGGIGKTTLAQEVYNDKLTDDFK-PKAWVCVSDDFDILRISKAILESITRSSCG-LTDLNSVQLKLKEA-- 180 (1217)
Q Consensus 105 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~l~~~-- 180 (1217)
..|-|.++|.|||||||++-.+.. ++..|. .+.+|....--|...+.-.....++..... ....+.+...+...
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~--~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g~~~~~~~~~~~~~rr~ 90 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH--AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQPGDSAVDTLVRRIGDRRA 90 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh--HhhhcccceeeeeccccCchhHhHHHHHhhcccccccchHHHHHHHHHHhhhhH
Confidence 347899999999999999999876 567785 455666666667777777777777766543 22222333322222
Q ss_pred HHhcCcCHHHHHH---hhcccCCCCCCcEEEEEcCchHHHHhhCCCceEeccCCChH-HHHHHHHHHHhCCC-CCCCCCc
Q 039990 181 VFKKNKSYELWQA---LKSPFMAGAPGSRIIVTTRSMDVALKMGSGKNYELKHLSDD-DCWSVFLNHAFEGI-DTGTQGN 255 (1217)
Q Consensus 181 l~~~~~~~~~~~~---l~~~~~~~~~gs~ilvTtR~~~v~~~~~~~~~~~l~~l~~~-~~~~lf~~~~~~~~-~~~~~~~ 255 (1217)
+...+......+. +...+..+...-.|+.|+|.... ..++....+..|+.. ++.++|...+.... .-.....
T Consensus 91 llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l~~~ 167 (414)
T COG3903 91 LLVLDNCEHLLDACAALIVALLGACPRLAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVCRAVLVALSFWLTDD 167 (414)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhc---ccccccccCCccccCCchhHHHHHHHHHhccceeecCC
Confidence 1111222222222 22334445566678999997543 245567778888765 79999988874322 1122233
Q ss_pred hhhHHHHHHHhccCCchhHHHHHHHhhcCCC-------hhHHHHHHhhccCCCCCCCCchHHHHHhhcCCChhHHHHHHH
Q 039990 256 FESTRQRVVAKCKGLPLAARALGGLLRSKQR-------VDEWRAILNSKIWDLEDEIEIPSVLKLSYHHLPSHLKRCFAY 328 (1217)
Q Consensus 256 ~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~-------~~~w~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~f~~ 328 (1217)
......+|.+...|.|++|..+++..+.-.. .+.|..+-+..+............+.+||.-|..-.+.-|..
T Consensus 168 ~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe~~~~~r 247 (414)
T COG3903 168 NAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWERALFGR 247 (414)
T ss_pred chHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHHHHHhcc
Confidence 4567889999999999999999998876432 123333322211111122267889999999999999999999
Q ss_pred hhcCCCCcccChHHHHHHHHHhCCcccccccccHHHHHHHHHHHHHhccCCcccC-CCCCeEEEchhHHHHHHHH
Q 039990 329 CAILPKDYEFQEEELVLLWIAEGFIQQSKYSKQLEDWGSEYFHDLLSRSMFQKSS-NNESKFVMHDLVHDLAQWA 402 (1217)
Q Consensus 329 ~~~fp~~~~i~~~~li~~w~~~g~i~~~~~~~~~~~~~~~~l~~L~~~sl~~~~~-~~~~~~~mh~lv~~~~~~~ 402 (1217)
++.|...|... ...|.+.|--... ..-.....+..+++++++...+ .+...|+.-+-++.|+..+
T Consensus 248 La~~~g~f~~~----l~~~~a~g~~~~~-----~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~Yalae 313 (414)
T COG3903 248 LAVFVGGFDLG----LALAVAAGADVDV-----PRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAE 313 (414)
T ss_pred hhhhhhhhccc----HHHHHhcCCcccc-----chHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 99998877554 2344554422110 1122344577888888887532 2233555555556565443
No 41
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.35 E-value=4.3e-05 Score=89.98 Aligned_cols=293 Identities=10% Similarity=0.046 Sum_probs=149.8
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhcc----ccCCCC--CeEEEEeCCcccHHH
Q 039990 78 EPAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDK----LTDDFK--PKAWVCVSDDFDILR 151 (1217)
Q Consensus 78 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~----~~~~F~--~~~wv~~~~~~~~~~ 151 (1217)
+..+.|||+|+++|...|...-.+. ....++.|+|.+|.|||++++.|.+.. .+...+ .+++|.+..-.+...
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgs-gpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~s 832 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQS-GSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNA 832 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcC-CCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHH
Confidence 3578999999999998886532211 223578899999999999999998753 112222 256677776677888
Q ss_pred HHHHHHHHhhcCCCC-CCChhHHHHHHHHHHHhc--------CcCHHHH-----HHhhcccC-CCCCCcEEEE--EcCch
Q 039990 152 ISKAILESITRSSCG-LTDLNSVQLKLKEAVFKK--------NKSYELW-----QALKSPFM-AGAPGSRIIV--TTRSM 214 (1217)
Q Consensus 152 ~~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l~~~--------~~~~~~~-----~~l~~~~~-~~~~gs~ilv--TtR~~ 214 (1217)
++..|++++...... .....+....+...+... +|+.+.+ +.+...+. ....+++|+| +|...
T Consensus 833 IYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdl 912 (1164)
T PTZ00112 833 AYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTM 912 (1164)
T ss_pred HHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCch
Confidence 999999988544321 222223333444333221 2222221 11221111 1123555544 34322
Q ss_pred H--------HHHhhCCCceEeccCCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhccCCchhHHHHHHHhhcCCC
Q 039990 215 D--------VALKMGSGKNYELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGLPLAARALGGLLRSKQR 286 (1217)
Q Consensus 215 ~--------v~~~~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~ 286 (1217)
+ +...++ ...+..++++.++-.+++..++......-.+..++-+|+.++..-|-.-.||.++-.....+..
T Consensus 913 DLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgEikeg 991 (1164)
T PTZ00112 913 DLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFENKRG 991 (1164)
T ss_pred hcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhcCC
Confidence 2 222222 2346679999999999999998542211122223333444444445566666655444332111
Q ss_pred ----hhHHHHHHhhccCCCCCCCCchHHHHHhhcCCChhHHHHHHHhhcCCC---CcccChHHHHHHH--HHhCCccccc
Q 039990 287 ----VDEWRAILNSKIWDLEDEIEIPSVLKLSYHHLPSHLKRCFAYCAILPK---DYEFQEEELVLLW--IAEGFIQQSK 357 (1217)
Q Consensus 287 ----~~~w~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~f~~~~~fp~---~~~i~~~~li~~w--~~~g~i~~~~ 357 (1217)
.+.-+++.... ....+.-....||.+.|..+..+...-+ ...+....+.... +++..-....
T Consensus 992 skVT~eHVrkAleei---------E~srI~e~IktLPlHqKLVLlALIlLlk~tg~~~i~TGEVYerYk~Lce~~Gk~iG 1062 (1164)
T PTZ00112 992 QKIVPRDITEATNQL---------FDSPLTNAINYLPWPFKMFLTCLIVELRMLNDFIIPYKKVLNRYKVLVETSGKYIG 1062 (1164)
T ss_pred CccCHHHHHHHHHHH---------HhhhHHHHHHcCCHHHHHHHHHHHHHHhhcCCCceeHHHHHHHHHHHHHhhhhhcC
Confidence 22222222211 0112344556899998876654433211 1134444433322 2220000000
Q ss_pred ccccHHHHHHHHHHHHHhccCCccc
Q 039990 358 YSKQLEDWGSEYFHDLLSRSMFQKS 382 (1217)
Q Consensus 358 ~~~~~~~~~~~~l~~L~~~sl~~~~ 382 (1217)
.....+ ...+++.+|...|+|...
T Consensus 1063 v~plTq-RV~d~L~eL~~LGIIl~e 1086 (1164)
T PTZ00112 1063 MCSNNE-LFKIMLDKLVKMGILLIR 1086 (1164)
T ss_pred CCCcHH-HHHHHHHHHHhcCeEEec
Confidence 001112 556677777777777654
No 42
>PF05729 NACHT: NACHT domain
Probab=98.34 E-value=2.5e-06 Score=85.51 Aligned_cols=132 Identities=19% Similarity=0.259 Sum_probs=75.7
Q ss_pred EEEEEEccCCchHHHHHHHHHhcc-ccCC----CCCeEEEEeCCcccHH---HHHHHHHHHhhcCCCCCCChhHHHHHHH
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDK-LTDD----FKPKAWVCVSDDFDIL---RISKAILESITRSSCGLTDLNSVQLKLK 178 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~-~~~~----F~~~~wv~~~~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 178 (1217)
|++.|+|.+|+||||+++.++.+. .... +...+|+......+.. .+...|..+..... ..... ...
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~---~~~~~---~~~ 74 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI---APIEE---LLQ 74 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch---hhhHH---HHH
Confidence 588999999999999999998764 2222 3456677665544322 33333433332211 11111 111
Q ss_pred HHHHhc------CcCHHH------------HHH-hhcccCC-CCCCcEEEEEcCchHH---HHhhCCCceEeccCCChHH
Q 039990 179 EAVFKK------NKSYEL------------WQA-LKSPFMA-GAPGSRIIVTTRSMDV---ALKMGSGKNYELKHLSDDD 235 (1217)
Q Consensus 179 ~~l~~~------~~~~~~------------~~~-l~~~~~~-~~~gs~ilvTtR~~~v---~~~~~~~~~~~l~~l~~~~ 235 (1217)
...... .|..|+ +.. +...+.. ..++.+|+||+|.... .........+++++|++++
T Consensus 75 ~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 75 ELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEED 154 (166)
T ss_pred HHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHH
Confidence 111111 111111 222 2222222 2468999999998776 3333444689999999999
Q ss_pred HHHHHHHHH
Q 039990 236 CWSVFLNHA 244 (1217)
Q Consensus 236 ~~~lf~~~~ 244 (1217)
..+++.++.
T Consensus 155 ~~~~~~~~f 163 (166)
T PF05729_consen 155 IKQYLRKYF 163 (166)
T ss_pred HHHHHHHHh
Confidence 999997764
No 43
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.32 E-value=9.2e-08 Score=93.37 Aligned_cols=62 Identities=26% Similarity=0.371 Sum_probs=18.5
Q ss_pred CCCcceEEEcCCCCcccccccccccccChhhhcccccCcEEecccccccccccccc-cccccccEEeecCCccccc
Q 039990 480 KCKKLRVLSLEKDNIAEVPISIGCLKCLPEAITSLFNLEILILSYCWCLLKLPSSI-GNLVNLHHLDIEGADRLCE 554 (1217)
Q Consensus 480 ~l~~Lr~L~L~~~~i~~lp~~i~~L~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i-~~L~~L~~L~l~~~~~l~~ 554 (1217)
.+.+|++|+|++|.|+.++. +..|.+|++|++++| .+..++..+ ..+++|++|++++| ++..
T Consensus 40 ~l~~L~~L~Ls~N~I~~l~~-----------l~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~L~~L~L~~N-~I~~ 102 (175)
T PF14580_consen 40 TLDKLEVLDLSNNQITKLEG-----------LPGLPRLKTLDLSNN-RISSISEGLDKNLPNLQELYLSNN-KISD 102 (175)
T ss_dssp T-TT--EEE-TTS--S--TT---------------TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS----S
T ss_pred hhcCCCEEECCCCCCccccC-----------ccChhhhhhcccCCC-CCCccccchHHhCCcCCEEECcCC-cCCC
Confidence 34555566666666555432 444555666666655 455554433 24556666666555 4443
No 44
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=9.7e-08 Score=101.58 Aligned_cols=178 Identities=16% Similarity=0.187 Sum_probs=98.9
Q ss_pred CCcccEEEEcCCCCCccc---cccCCCCCCcceEEecCCCCCcccCCC---CCCCCcceEEEccCcCcccCC--CCCCCC
Q 039990 979 DACLRSIRLSYCKNLKSL---PKGLNNLSHLHRRSIQGCHNLVSLPED---ALPSNVVDVSIEDCDKLKAPL--PTGKLS 1050 (1217)
Q Consensus 979 l~~L~~L~L~~c~~l~~l---~~~l~~l~~L~~L~l~~c~~l~~l~~~---~~~~~L~~L~l~~~~~l~~~~--~~~~l~ 1050 (1217)
|++++.|+|++| .+..+ ..-...+|+|+.|+++.|. +..+.+. ...+.|+.|.++.|....-.. -...+|
T Consensus 145 ~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nr-l~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fP 222 (505)
T KOG3207|consen 145 LPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNR-LSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFP 222 (505)
T ss_pred CCcceeecchhh-hHHhHHHHHHHHHhcccchhccccccc-ccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCC
Confidence 555666666552 22222 2233456666666666642 3322221 122466667777665331100 014678
Q ss_pred CcceEeeccCCCccccCC-CCCCCCCCeEEecCCCCCccccccccccCCcccceeeccCCCccccc--cc--cccCCCCC
Q 039990 1051 SLQLLTLIECPGIVFFPE-EGLSTNLTDLEISGDNIYKPLVKWGFDKFSSLRKHCINRCSDAVSFP--EV--EKGVILPT 1125 (1217)
Q Consensus 1051 ~L~~L~l~~c~~l~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~--~~--~~~~~~~~ 1125 (1217)
+|+.|++.+|..+..... ...+..|++|+|++|+..+.-.......++.|..|.++.|. +.++. +. .+....++
T Consensus 223 sl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tg-i~si~~~d~~s~~kt~~f~ 301 (505)
T KOG3207|consen 223 SLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTG-IASIAEPDVESLDKTHTFP 301 (505)
T ss_pred cHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccC-cchhcCCCccchhhhcccc
Confidence 888888887753332222 24567788888888877754433345778888888888753 33222 11 01124568
Q ss_pred CcceEeecCCCCCcccCc-cccCCcccccccccccc
Q 039990 1126 SLTLIRISDFPKLERLSS-KGFHYLLSLEQLKVSSC 1160 (1217)
Q Consensus 1126 ~L~~L~l~~c~~l~~l~~-~~~~~l~~L~~L~l~~c 1160 (1217)
+|+.|.+.. |++...+. ..+..+.+|+.|.+-.+
T Consensus 302 kL~~L~i~~-N~I~~w~sl~~l~~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 302 KLEYLNISE-NNIRDWRSLNHLRTLENLKHLRITLN 336 (505)
T ss_pred cceeeeccc-Cccccccccchhhccchhhhhhcccc
Confidence 888888888 66655442 23555677777776665
No 45
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.29 E-value=4.5e-07 Score=88.56 Aligned_cols=132 Identities=25% Similarity=0.218 Sum_probs=47.9
Q ss_pred CCCCcceEEEcCCCCcccccccccccccChhhhc-ccccCcEEecccccccccccccccccccccEEeecCCccccccCC
Q 039990 479 PKCKKLRVLSLEKDNIAEVPISIGCLKCLPEAIT-SLFNLEILILSYCWCLLKLPSSIGNLVNLHHLDIEGADRLCELPL 557 (1217)
Q Consensus 479 ~~l~~Lr~L~L~~~~i~~lp~~i~~L~~lp~~i~-~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~ 557 (1217)
.+...+|.|+|.+|.|+.+. .++ .+.+|+.|+|++| .++.++ ++..|++|++|++++| .++.++.
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie-----------~L~~~l~~L~~L~Ls~N-~I~~l~-~l~~L~~L~~L~L~~N-~I~~i~~ 81 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIE-----------NLGATLDKLEVLDLSNN-QITKLE-GLPGLPRLKTLDLSNN-RISSISE 81 (175)
T ss_dssp -------------------------------S--TT-TT--EEE-TTS---S--T-T----TT--EEE--SS----S-CH
T ss_pred cccccccccccccccccccc-----------chhhhhcCCCEEECCCC-CCcccc-CccChhhhhhcccCCC-CCCcccc
Confidence 34457888999999888764 244 5788899999998 788886 4888899999999988 7888865
Q ss_pred CC-ccCcccccccccccccChhhhHHHHhcCCCCCCeEEEEecCCCCchhhHHHHhcccCCCCCccEEEEEe
Q 039990 558 GM-KELKCLRTLTDFINVIDSQEANEAMLRGKKDLEVLKLVWSGGPVDELREKNILDMLKPHCNIKRLEIIS 628 (1217)
Q Consensus 558 ~i-~~L~~L~~L~~~~n~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~ 628 (1217)
++ ..+++|++|.+..|.+...... ..+..+++|+.|++..|+......... ..+..+|+|+.|+-..
T Consensus 82 ~l~~~lp~L~~L~L~~N~I~~l~~l-~~L~~l~~L~~L~L~~NPv~~~~~YR~---~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 82 GLDKNLPNLQELYLSNNKISDLNEL-EPLSSLPKLRVLSLEGNPVCEKKNYRL---FVIYKLPSLKVLDGQD 149 (175)
T ss_dssp HHHHH-TT--EEE-TTS---SCCCC-GGGGG-TT--EEE-TT-GGGGSTTHHH---HHHHH-TT-SEETTEE
T ss_pred chHHhCCcCCEEECcCCcCCChHHh-HHHHcCCCcceeeccCCcccchhhHHH---HHHHHcChhheeCCEE
Confidence 55 3578888888888777654332 346778888888886554322211111 1233467788877544
No 46
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.29 E-value=7.8e-07 Score=70.95 Aligned_cols=58 Identities=36% Similarity=0.582 Sum_probs=50.6
Q ss_pred CcceEEEcCCCCcccccccccccccChhhhcccccCcEEecccccccccccc-cccccccccEEeecCC
Q 039990 482 KKLRVLSLEKDNIAEVPISIGCLKCLPEAITSLFNLEILILSYCWCLLKLPS-SIGNLVNLHHLDIEGA 549 (1217)
Q Consensus 482 ~~Lr~L~L~~~~i~~lp~~i~~L~~lp~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~ 549 (1217)
++|++|++++|+++.+| +..|..+++|++|++++| .+..+|. .|.++++|++|++++|
T Consensus 1 p~L~~L~l~~n~l~~i~---------~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIP---------PDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEEC---------TTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccC---------HHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCC
Confidence 46899999999999888 467899999999999988 7788876 4799999999999998
No 47
>PTZ00202 tuzin; Provisional
Probab=98.20 E-value=1.1e-05 Score=87.51 Aligned_cols=96 Identities=13% Similarity=0.181 Sum_probs=67.0
Q ss_pred cCCCCCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCcccHHHHH
Q 039990 74 CLTSEPAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDFDILRIS 153 (1217)
Q Consensus 74 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~~~~~~~~ 153 (1217)
.+.+.+.|+||+++++++...|...+. ...+++.|+|++|+|||||++.+... .. + .+++.-.. +..+++
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~~d~---~~privvLtG~~G~GKTTLlR~~~~~-l~--~--~qL~vNpr--g~eElL 326 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRRLDT---AHPRIVVFTGFRGCGKSSLCRSAVRK-EG--M--PAVFVDVR--GTEDTL 326 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhccCC---CCceEEEEECCCCCCHHHHHHHHHhc-CC--c--eEEEECCC--CHHHHH
Confidence 345567899999999999999875433 33579999999999999999998865 22 1 23333223 679999
Q ss_pred HHHHHHhhcCCCCCCChhHHHHHHHHHH
Q 039990 154 KAILESITRSSCGLTDLNSVQLKLKEAV 181 (1217)
Q Consensus 154 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l 181 (1217)
..|+.+++.+.. ....++...+.+.+
T Consensus 327 r~LL~ALGV~p~--~~k~dLLrqIqeaL 352 (550)
T PTZ00202 327 RSVVKALGVPNV--EACGDLLDFISEAC 352 (550)
T ss_pred HHHHHHcCCCCc--ccHHHHHHHHHHHH
Confidence 999999997422 22234444444443
No 48
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=2.4e-08 Score=100.38 Aligned_cols=87 Identities=21% Similarity=0.169 Sum_probs=43.6
Q ss_pred CCcccEEEEcCCCCCccccccCCCCCCcceEEecCCCCCcccCCCCCCCCcceEEEccCcCcccCCCCCCCCCcceEeec
Q 039990 979 DACLRSIRLSYCKNLKSLPKGLNNLSHLHRRSIQGCHNLVSLPEDALPSNVVDVSIEDCDKLKAPLPTGKLSSLQLLTLI 1058 (1217)
Q Consensus 979 l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~ 1058 (1217)
|.+|+.|.|.++..-..+...+..-.+|+.|++++|+.++..... .-+.+|+.|.+|+++
T Consensus 209 C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~--------------------ll~~scs~L~~LNls 268 (419)
T KOG2120|consen 209 CSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQ--------------------LLLSSCSRLDELNLS 268 (419)
T ss_pred HHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHH--------------------HHHHhhhhHhhcCch
Confidence 555666666654433334444455566666666666555443210 011355666666666
Q ss_pred cCCCcccc---CCCCCCCCCCeEEecCCCC
Q 039990 1059 ECPGIVFF---PEEGLSTNLTDLEISGDNI 1085 (1217)
Q Consensus 1059 ~c~~l~~~---~~~~~~~~L~~L~l~~~~~ 1085 (1217)
.|...+.. -.....++|+.|+++|+..
T Consensus 269 Wc~l~~~~Vtv~V~hise~l~~LNlsG~rr 298 (419)
T KOG2120|consen 269 WCFLFTEKVTVAVAHISETLTQLNLSGYRR 298 (419)
T ss_pred HhhccchhhhHHHhhhchhhhhhhhhhhHh
Confidence 65433221 1113455666666666543
No 49
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.14 E-value=6.3e-05 Score=93.67 Aligned_cols=159 Identities=16% Similarity=0.118 Sum_probs=101.1
Q ss_pred CceEeccCCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhccCCchhHHHHHHHhhcC------CChhHHHHHHhh
Q 039990 223 GKNYELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGLPLAARALGGLLRSK------QRVDEWRAILNS 296 (1217)
Q Consensus 223 ~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~------~~~~~w~~~~~~ 296 (1217)
...+.|.||+..+...+........ .....+..+.|+++..|+|+-+..+-..+... .+...|..=...
T Consensus 211 i~~I~L~PL~~~d~~~lV~~~l~~~-----~~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~ 285 (849)
T COG3899 211 ITTITLAPLSRADTNQLVAATLGCT-----KLLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIAS 285 (849)
T ss_pred eeEEecCcCchhhHHHHHHHHhCCc-----ccccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHh
Confidence 3689999999999999988875321 12234578999999999999999998888764 223344422211
Q ss_pred ccCCCCCCCCchHHHHHhhcCCChhHHHHHHHhhcCCCCcccChHHHHHHHHHhCCcccccccccHHHHHHHHHHHHHhc
Q 039990 297 KIWDLEDEIEIPSVLKLSYHHLPSHLKRCFAYCAILPKDYEFQEEELVLLWIAEGFIQQSKYSKQLEDWGSEYFHDLLSR 376 (1217)
Q Consensus 297 ~~~~~~~~~~i~~~l~~sy~~L~~~~k~~f~~~~~fp~~~~i~~~~li~~w~~~g~i~~~~~~~~~~~~~~~~l~~L~~~ 376 (1217)
.. ....-..+.+.+..-.+.||...|..+...|++... |+.+.|...|-. ....++...++.|...
T Consensus 286 i~-~~~~~~~vv~~l~~rl~kL~~~t~~Vl~~AA~iG~~--F~l~~La~l~~~-----------~~~~~a~~l~~al~e~ 351 (849)
T COG3899 286 LG-ILATTDAVVEFLAARLQKLPGTTREVLKAAACIGNR--FDLDTLAALAED-----------SPALEAAALLDALQEG 351 (849)
T ss_pred cC-CchhhHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcc--CCHHHHHHHHhh-----------chHHHHHHHHHHhHhh
Confidence 10 011001234457888999999999999999999654 556666555421 2335566666666665
Q ss_pred cCCcccC-----CCCCe--E-EEchhHHHHHH
Q 039990 377 SMFQKSS-----NNESK--F-VMHDLVHDLAQ 400 (1217)
Q Consensus 377 sl~~~~~-----~~~~~--~-~mh~lv~~~~~ 400 (1217)
.++...+ ..... | -.||.|++.+-
T Consensus 352 lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqaaY 383 (849)
T COG3899 352 LILPLSETYRFGSNVDIATYKFLHDRVQQAAY 383 (849)
T ss_pred ceeccccccccccccchhhHHhhHHHHHHHHh
Confidence 5554221 11111 2 36888888774
No 50
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=4.9e-08 Score=98.16 Aligned_cols=132 Identities=11% Similarity=0.157 Sum_probs=82.1
Q ss_pred CccEEeecCCCCCc-ccccccccccCcceEeeccCCCccccccccCCCCcccEEEEcCCCCCcccc--ccCCCCCCcceE
Q 039990 933 TLKCIQIEDCSNFK-VLTSECQLSVAVEELTIDSCSNIESIAERFHDDACLRSIRLSYCKNLKSLP--KGLNNLSHLHRR 1009 (1217)
Q Consensus 933 ~L~~L~l~~~~~l~-~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~L~~c~~l~~l~--~~l~~l~~L~~L 1009 (1217)
.|+.||+++..... .+...+..+..|+.|.+.++..-..+...+..-.+|+.|+|+.|+.++... --+.+|+.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 47777877754322 233344567778888887765555555555556789999999998877652 234778889999
Q ss_pred EecCCCCCcccCC---CCCCCCcceEEEccCcCcccCCCC----CCCCCcceEeeccCCCcc
Q 039990 1010 SIQGCHNLVSLPE---DALPSNVVDVSIEDCDKLKAPLPT----GKLSSLQLLTLIECPGIV 1064 (1217)
Q Consensus 1010 ~l~~c~~l~~l~~---~~~~~~L~~L~l~~~~~l~~~~~~----~~l~~L~~L~l~~c~~l~ 1064 (1217)
+++.|...+.... .....+|+.|+++||...-....+ ..+|+|.+||+++|..+.
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~ 327 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLK 327 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccC
Confidence 9999875554321 122346777777777533221111 456666666666665443
No 51
>PRK06893 DNA replication initiation factor; Validated
Probab=98.13 E-value=3.3e-05 Score=81.02 Aligned_cols=153 Identities=18% Similarity=0.220 Sum_probs=86.9
Q ss_pred EEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCcccHHHHHHHHHHHhhcCCC-CCCChhHHHHHHHHHHHhcC
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDFDILRISKAILESITRSSC-GLTDLNSVQLKLKEAVFKKN 185 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-~~~~~~~~~~~l~~~l~~~~ 185 (1217)
+.+.|+|.+|+|||+||+++++.. ......+.|+.+.... ....++.+.+....- -.++.+..
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~-~~~~~~~~y~~~~~~~---~~~~~~~~~~~~~dlLilDDi~~~------------ 103 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHY-LLNQRTAIYIPLSKSQ---YFSPAVLENLEQQDLVCLDDLQAV------------ 103 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH-HHcCCCeEEeeHHHhh---hhhHHHHhhcccCCEEEEeChhhh------------
Confidence 578999999999999999999873 2233456777764211 111122222211100 01111110
Q ss_pred cCHHHHHH-hhcccCCC-CCCcEEE-EEcCc---------hHHHHhhCCCceEeccCCChHHHHHHHHHHHhCCCCCCCC
Q 039990 186 KSYELWQA-LKSPFMAG-APGSRII-VTTRS---------MDVALKMGSGKNYELKHLSDDDCWSVFLNHAFEGIDTGTQ 253 (1217)
Q Consensus 186 ~~~~~~~~-l~~~~~~~-~~gs~il-vTtR~---------~~v~~~~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~ 253 (1217)
.....|+. +...+... ..|..+| +|++. +++...+....++++++++.++.++++.+.+.... .
T Consensus 104 ~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~-l--- 179 (229)
T PRK06893 104 IGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRG-I--- 179 (229)
T ss_pred cCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcC-C---
Confidence 01123332 22222211 1355554 45544 45666666677999999999999999999986432 1
Q ss_pred CchhhHHHHHHHhccCCchhHHHHHH
Q 039990 254 GNFESTRQRVVAKCKGLPLAARALGG 279 (1217)
Q Consensus 254 ~~~~~~~~~i~~~~~g~PLai~~~~~ 279 (1217)
.-.+++.+-|++.+.|-.-++..+-.
T Consensus 180 ~l~~~v~~~L~~~~~~d~r~l~~~l~ 205 (229)
T PRK06893 180 ELSDEVANFLLKRLDRDMHTLFDALD 205 (229)
T ss_pred CCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 12256778888888877655554443
No 52
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.12 E-value=4.3e-07 Score=99.88 Aligned_cols=155 Identities=26% Similarity=0.259 Sum_probs=91.0
Q ss_pred cChhhhcccccCcEEecccccccccccccccccccccEEeecCCccccccCCCCccCcccccccccccccChhhhHHHHh
Q 039990 506 CLPEAITSLFNLEILILSYCWCLLKLPSSIGNLVNLHHLDIEGADRLCELPLGMKELKCLRTLTDFINVIDSQEANEAML 585 (1217)
Q Consensus 506 ~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~~~~n~~~~~~~~~~~l 585 (1217)
.+|.++++|..|.+|||+.| .+..+|..++.|. |+.|-+++| +++.+|.+|+-+..|.+|+...|.+. .....+
T Consensus 112 ~ip~~i~~L~~lt~l~ls~N-qlS~lp~~lC~lp-Lkvli~sNN-kl~~lp~~ig~~~tl~~ld~s~nei~---slpsql 185 (722)
T KOG0532|consen 112 TIPEAICNLEALTFLDLSSN-QLSHLPDGLCDLP-LKVLIVSNN-KLTSLPEEIGLLPTLAHLDVSKNEIQ---SLPSQL 185 (722)
T ss_pred ecchhhhhhhHHHHhhhccc-hhhcCChhhhcCc-ceeEEEecC-ccccCCcccccchhHHHhhhhhhhhh---hchHHh
Confidence 45567777788888888887 6777887776554 777777777 78888888877777777775544332 223335
Q ss_pred cCCCCCCeEEEEecCCCCchhhHHHHhcccCCCCCccEEEEEeeCCCCCCCCcCCCCcCcccEEEEecCCCCCCCC----
Q 039990 586 RGKKDLEVLKLVWSGGPVDELREKNILDMLKPHCNIKRLEIISYGSTRFPSWVGDPSFSNVAVLKLENCDRCTSLP---- 661 (1217)
Q Consensus 586 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~---- 661 (1217)
+++..|+.|.+.- ..-..+++.+. .-.|..|++++|++..+|-.+.. +..|++|.|.+|. +..-|
T Consensus 186 ~~l~slr~l~vrR-------n~l~~lp~El~-~LpLi~lDfScNkis~iPv~fr~--m~~Lq~l~LenNP-LqSPPAqIC 254 (722)
T KOG0532|consen 186 GYLTSLRDLNVRR-------NHLEDLPEELC-SLPLIRLDFSCNKISYLPVDFRK--MRHLQVLQLENNP-LQSPPAQIC 254 (722)
T ss_pred hhHHHHHHHHHhh-------hhhhhCCHHHh-CCceeeeecccCceeecchhhhh--hhhheeeeeccCC-CCCChHHHH
Confidence 5555555555421 11122233333 23456666677666666665543 6667777666643 23333
Q ss_pred CCCCcCCCCeeEEcCC
Q 039990 662 SLGQLCSLKDLTIVGM 677 (1217)
Q Consensus 662 ~l~~l~~L~~L~l~~~ 677 (1217)
.-|...-.|+|++.-|
T Consensus 255 ~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 255 EKGKVHIFKYLSTQAC 270 (722)
T ss_pred hccceeeeeeecchhc
Confidence 1233444455555544
No 53
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.04 E-value=9.7e-05 Score=75.02 Aligned_cols=178 Identities=16% Similarity=0.185 Sum_probs=99.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCcccHHHHHHHHHH
Q 039990 79 PAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDFDILRISKAILE 158 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 158 (1217)
.+|||.++-++.+.=.+.....++ ..+--|.++|++|.||||||.-+++.. ...+ -+..+....-..-+..|+.
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r~-e~lDHvLl~GPPGlGKTTLA~IIA~Em-gvn~----k~tsGp~leK~gDlaaiLt 99 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKRG-EALDHVLLFGPPGLGKTTLAHIIANEL-GVNL----KITSGPALEKPGDLAAILT 99 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhcC-CCcCeEEeeCCCCCcHHHHHHHHHHHh-cCCe----EecccccccChhhHHHHHh
Confidence 579999888888766665543333 556688899999999999999999873 2222 2222222222222333333
Q ss_pred HhhcCCC-CCCChhHHHHHHHHHHHhcCcCHHHHHHhhcc-cCCCCCCcE-----------EEEEcCchHHHHhhC--CC
Q 039990 159 SITRSSC-GLTDLNSVQLKLKEAVFKKNKSYELWQALKSP-FMAGAPGSR-----------IIVTTRSMDVALKMG--SG 223 (1217)
Q Consensus 159 ~l~~~~~-~~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~-~~~~~~gs~-----------ilvTtR~~~v~~~~~--~~ 223 (1217)
.+...+. -.++...+...+.+.+- ...|++.-. .-..++++| |=.|||...+...+. -.
T Consensus 100 ~Le~~DVLFIDEIHrl~~~vEE~LY------paMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G~lt~PLrdRFG 173 (332)
T COG2255 100 NLEEGDVLFIDEIHRLSPAVEEVLY------PAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRAGMLTNPLRDRFG 173 (332)
T ss_pred cCCcCCeEEEehhhhcChhHHHHhh------hhhhheeEEEEEccCCccceEeccCCCeeEeeeccccccccchhHHhcC
Confidence 3332221 11222222222222221 112221111 111223333 335898755433222 23
Q ss_pred ceEeccCCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhccCCch
Q 039990 224 KNYELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGLPL 272 (1217)
Q Consensus 224 ~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL 272 (1217)
.+.+++-.+.+|-.++..+.+..-. -+-.++.+.+|++...|-|-
T Consensus 174 i~~rlefY~~~eL~~Iv~r~a~~l~----i~i~~~~a~eIA~rSRGTPR 218 (332)
T COG2255 174 IIQRLEFYTVEELEEIVKRSAKILG----IEIDEEAALEIARRSRGTPR 218 (332)
T ss_pred CeeeeecCCHHHHHHHHHHHHHHhC----CCCChHHHHHHHHhccCCcH
Confidence 4778899999999999988873211 12224678999999999994
No 54
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.97 E-value=1.4e-06 Score=87.68 Aligned_cols=137 Identities=20% Similarity=0.177 Sum_probs=84.8
Q ss_pred cCCCCcceEEEcCCCCcccccccccccccChhhhcccccCcEEecccccccccccccccccccccEEeecCCccccccCC
Q 039990 478 LPKCKKLRVLSLEKDNIAEVPISIGCLKCLPEAITSLFNLEILILSYCWCLLKLPSSIGNLVNLHHLDIEGADRLCELPL 557 (1217)
Q Consensus 478 ~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~ 557 (1217)
....+.|..|||++|.|+.+.. ++.-++.+++|++++| .+..+-. +..|.+|++||+++| .+..+-.
T Consensus 280 ~dTWq~LtelDLS~N~I~~iDE----------SvKL~Pkir~L~lS~N-~i~~v~n-La~L~~L~~LDLS~N-~Ls~~~G 346 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQIDE----------SVKLAPKLRRLILSQN-RIRTVQN-LAELPQLQLLDLSGN-LLAECVG 346 (490)
T ss_pred cchHhhhhhccccccchhhhhh----------hhhhccceeEEecccc-ceeeehh-hhhcccceEeecccc-hhHhhhh
Confidence 3455677788888888877653 4455567888888887 5666644 777888888888887 6666654
Q ss_pred CCccCcccccccccccccChhhhHHHHhcCCCCCCeEEEEecCCCCchhhHHHHhcccCCCCCccEEEEEeeCCCCCCC
Q 039990 558 GMKELKCLRTLTDFINVIDSQEANEAMLRGKKDLEVLKLVWSGGPVDELREKNILDMLKPHCNIKRLEIISYGSTRFPS 636 (1217)
Q Consensus 558 ~i~~L~~L~~L~~~~n~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~ 636 (1217)
.-.+|.|.++|.+..|.+... ..++++-+|..|++.. +...+.+-...++.+|+|+.+.+.+|....+|.
T Consensus 347 wh~KLGNIKtL~La~N~iE~L----SGL~KLYSLvnLDl~~-----N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 347 WHLKLGNIKTLKLAQNKIETL----SGLRKLYSLVNLDLSS-----NQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred hHhhhcCEeeeehhhhhHhhh----hhhHhhhhheeccccc-----cchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence 445566666666554433221 1244455566666532 223334445566677777777777776666554
No 55
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.97 E-value=4e-06 Score=97.31 Aligned_cols=172 Identities=31% Similarity=0.388 Sum_probs=95.6
Q ss_pred CCCcceEEEcCCCCcccccccccccccChhhhcccc-cCcEEecccccccccccccccccccccEEeecCCccccccCCC
Q 039990 480 KCKKLRVLSLEKDNIAEVPISIGCLKCLPEAITSLF-NLEILILSYCWCLLKLPSSIGNLVNLHHLDIEGADRLCELPLG 558 (1217)
Q Consensus 480 ~l~~Lr~L~L~~~~i~~lp~~i~~L~~lp~~i~~L~-~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~ 558 (1217)
.+..+..|++.++.++.+|. ....+. +|+.|++++| .+..+|..++.+++|+.|++++| .+..+|..
T Consensus 114 ~~~~l~~L~l~~n~i~~i~~----------~~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~ 181 (394)
T COG4886 114 ELTNLTSLDLDNNNITDIPP----------LIGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFN-DLSDLPKL 181 (394)
T ss_pred cccceeEEecCCcccccCcc----------ccccchhhccccccccc-chhhhhhhhhccccccccccCCc-hhhhhhhh
Confidence 34667777777777776653 334443 7777777776 67777666777777777777777 67777766
Q ss_pred CccCcccccccccccccChhhhHHHHhcCCCCCCeEEEEecCCCCchhhHHHHhcccCCCCCccEEEEEeeCCCCCCCCc
Q 039990 559 MKELKCLRTLTDFINVIDSQEANEAMLRGKKDLEVLKLVWSGGPVDELREKNILDMLKPHCNIKRLEIISYGSTRFPSWV 638 (1217)
Q Consensus 559 i~~L~~L~~L~~~~n~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~ 638 (1217)
.+.+.+|+.|++..|.+....... ....+|++|.+..+. .......+....++..+.+.++....++..+
T Consensus 182 ~~~~~~L~~L~ls~N~i~~l~~~~---~~~~~L~~l~~~~N~-------~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~ 251 (394)
T COG4886 182 LSNLSNLNNLDLSGNKISDLPPEI---ELLSALEELDLSNNS-------IIELLSSLSNLKNLSGLELSNNKLEDLPESI 251 (394)
T ss_pred hhhhhhhhheeccCCccccCchhh---hhhhhhhhhhhcCCc-------ceecchhhhhcccccccccCCceeeeccchh
Confidence 666677777766555444322211 122334444443221 1112222333444444444444444444444
Q ss_pred CCCCcCcccEEEEecCCCCCCCCCCCCcCCCCeeEEcC
Q 039990 639 GDPSFSNVAVLKLENCDRCTSLPSLGQLCSLKDLTIVG 676 (1217)
Q Consensus 639 ~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~l~~ 676 (1217)
.. +++++.|+++++ .+..++.++.+.+++.|++++
T Consensus 252 ~~--l~~l~~L~~s~n-~i~~i~~~~~~~~l~~L~~s~ 286 (394)
T COG4886 252 GN--LSNLETLDLSNN-QISSISSLGSLTNLRELDLSG 286 (394)
T ss_pred cc--ccccceeccccc-cccccccccccCccCEEeccC
Confidence 33 455666666663 344445566666666666665
No 56
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.93 E-value=2.5e-05 Score=77.84 Aligned_cols=181 Identities=17% Similarity=0.169 Sum_probs=87.6
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCcccHHHHHHHHH
Q 039990 78 EPAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDFDILRISKAIL 157 (1217)
Q Consensus 78 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 157 (1217)
-.+|||.++-++.+.-.+......+ +.+.-+..||++|+||||||.-+++. ....|. +.+.. ..+-..-+..++
T Consensus 23 L~efiGQ~~l~~~l~i~i~aa~~r~-~~l~h~lf~GPPG~GKTTLA~IIA~e-~~~~~~---~~sg~-~i~k~~dl~~il 96 (233)
T PF05496_consen 23 LDEFIGQEHLKGNLKILIRAAKKRG-EALDHMLFYGPPGLGKTTLARIIANE-LGVNFK---ITSGP-AIEKAGDLAAIL 96 (233)
T ss_dssp CCCS-S-HHHHHHHHHHHHHHHCTT-S---EEEEESSTTSSHHHHHHHHHHH-CT--EE---EEECC-C--SCHHHHHHH
T ss_pred HHHccCcHHHHhhhHHHHHHHHhcC-CCcceEEEECCCccchhHHHHHHHhc-cCCCeE---eccch-hhhhHHHHHHHH
Confidence 3579999988887655544321111 44567889999999999999999987 444442 33321 111111223334
Q ss_pred HHhhcCCC-CCCChhHHHHHHHHHHHhcCcCHHHHHHhhc-ccCCCCC-----------CcEEEEEcCchHHHHhhCCC-
Q 039990 158 ESITRSSC-GLTDLNSVQLKLKEAVFKKNKSYELWQALKS-PFMAGAP-----------GSRIIVTTRSMDVALKMGSG- 223 (1217)
Q Consensus 158 ~~l~~~~~-~~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~-~~~~~~~-----------gs~ilvTtR~~~v~~~~~~~- 223 (1217)
..+....- -.++...+....++.+..- .|+..- .+-..++ =+-|=.|||...+...+...
T Consensus 97 ~~l~~~~ILFIDEIHRlnk~~qe~Llpa------mEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrdRF 170 (233)
T PF05496_consen 97 TNLKEGDILFIDEIHRLNKAQQEILLPA------MEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRDRF 170 (233)
T ss_dssp HT--TT-EEEECTCCC--HHHHHHHHHH------HHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCTTS
T ss_pred HhcCCCcEEEEechhhccHHHHHHHHHH------hccCeEEEEeccccccceeeccCCCceEeeeeccccccchhHHhhc
Confidence 44432211 1123333322222222211 111000 0001111 12355689886554433332
Q ss_pred -ceEeccCCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhccCCchhH
Q 039990 224 -KNYELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGLPLAA 274 (1217)
Q Consensus 224 -~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 274 (1217)
-+.+++..+.+|-.++..+.+..- .-+-..+.+.+|++.+.|-|--.
T Consensus 171 gi~~~l~~Y~~~el~~Iv~r~a~~l----~i~i~~~~~~~Ia~rsrGtPRiA 218 (233)
T PF05496_consen 171 GIVLRLEFYSEEELAKIVKRSARIL----NIEIDEDAAEEIARRSRGTPRIA 218 (233)
T ss_dssp SEEEE----THHHHHHHHHHCCHCT----T-EE-HHHHHHHHHCTTTSHHHH
T ss_pred ceecchhcCCHHHHHHHHHHHHHHh----CCCcCHHHHHHHHHhcCCChHHH
Confidence 245799999999999998876332 12233578999999999999543
No 57
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.84 E-value=1.2e-05 Score=93.43 Aligned_cols=176 Identities=22% Similarity=0.323 Sum_probs=111.7
Q ss_pred CccEEeecCCCCCccccccccccc-CcceEeeccCCCccccccccCCCCcccEEEEcCCCCCccccccCCCCCCcceEEe
Q 039990 933 TLKCIQIEDCSNFKVLTSECQLSV-AVEELTIDSCSNIESIAERFHDDACLRSIRLSYCKNLKSLPKGLNNLSHLHRRSI 1011 (1217)
Q Consensus 933 ~L~~L~l~~~~~l~~~~~~~~~l~-~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~l 1011 (1217)
.+..|++.++ .+..++.....+. +|+.|+++++ .+..++.....+++|+.|++++| .+.++|.....+++|+.|++
T Consensus 117 ~l~~L~l~~n-~i~~i~~~~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~~L~l 193 (394)
T COG4886 117 NLTSLDLDNN-NITDIPPLIGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNNLDL 193 (394)
T ss_pred ceeEEecCCc-ccccCccccccchhhccccccccc-chhhhhhhhhccccccccccCCc-hhhhhhhhhhhhhhhhheec
Confidence 4555666553 3344444444453 7777777774 45555555566778888888874 46666665557778888888
Q ss_pred cCCCCCcccCCC-CCCCCcceEEEccCcCcccCCCCCCCCCcceEeeccCCCccccCCCCCCCCCCeEEecCCCCCcccc
Q 039990 1012 QGCHNLVSLPED-ALPSNVVDVSIEDCDKLKAPLPTGKLSSLQLLTLIECPGIVFFPEEGLSTNLTDLEISGDNIYKPLV 1090 (1217)
Q Consensus 1012 ~~c~~l~~l~~~-~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~ 1090 (1217)
++ +.++.+|.. ..+..|++|.++++.....+.....+.++..|.+.++.........+.++++++|++++|.......
T Consensus 194 s~-N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~ 272 (394)
T COG4886 194 SG-NKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS 272 (394)
T ss_pred cC-CccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceecccccccccccc
Confidence 87 457777764 3556688888888766666566677777777776554322212222556678888888876654332
Q ss_pred ccccccCCcccceeeccCCCccccc
Q 039990 1091 KWGFDKFSSLRKHCINRCSDAVSFP 1115 (1217)
Q Consensus 1091 ~~~~~~l~~L~~L~l~~~~~l~~~~ 1115 (1217)
+..+.+|+.|+++++......+
T Consensus 273 ---~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 273 ---LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred ---ccccCccCEEeccCccccccch
Confidence 5677778888887765544433
No 58
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.83 E-value=1.5e-05 Score=63.56 Aligned_cols=39 Identities=21% Similarity=0.282 Sum_probs=18.2
Q ss_pred CCCCCCcceEeecCCCCCcccCccccCCcccccccccccc
Q 039990 1121 VILPTSLTLIRISDFPKLERLSSKGFHYLLSLEQLKVSSC 1160 (1217)
Q Consensus 1121 ~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~L~~L~l~~c 1160 (1217)
|..+++|++|++++ +.++.+++..|.++++|++|++++|
T Consensus 21 f~~l~~L~~L~l~~-N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 21 FSNLPNLETLDLSN-NNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTTGTTESEEEETS-SSESEEETTTTTTSTTESEEEETSS
T ss_pred HcCCCCCCEeEccC-CccCccCHHHHcCCCCCCEEeCcCC
Confidence 33444444444443 4444444444445555555555544
No 59
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=97.78 E-value=0.00036 Score=77.43 Aligned_cols=174 Identities=17% Similarity=0.198 Sum_probs=107.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhcc-----ccCCCCCeEEEE-eCCcccHHHH
Q 039990 79 PAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDK-----LTDDFKPKAWVC-VSDDFDILRI 152 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~-----~~~~F~~~~wv~-~~~~~~~~~~ 152 (1217)
.+++|-+...+.+...+..+ .-.....++|+.|+||||+|+.+++.. ...+.|...|.. -+....+.+
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~-----~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~- 77 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKN-----RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD- 77 (313)
T ss_pred hhccCcHHHHHHHHHHHHcC-----CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-
Confidence 35889988899999998654 234678899999999999999988753 123445445544 233344444
Q ss_pred HHHHHHHhhcCCCCCC-C---hhHHHHHHHHHHHhcCcCHHHHHHhhcccCCCCCCcEEEEEcCchHHH-Hh-hCCCceE
Q 039990 153 SKAILESITRSSCGLT-D---LNSVQLKLKEAVFKKNKSYELWQALKSPFMAGAPGSRIIVTTRSMDVA-LK-MGSGKNY 226 (1217)
Q Consensus 153 ~~~i~~~l~~~~~~~~-~---~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~v~-~~-~~~~~~~ 226 (1217)
.+++.+.+........ . ++.. ...+...++.+...+.....++.+|++|.+.+.. .. ......+
T Consensus 78 ir~~~~~~~~~p~~~~~kv~iI~~a----------d~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~ 147 (313)
T PRK05564 78 IRNIIEEVNKKPYEGDKKVIIIYNS----------EKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIY 147 (313)
T ss_pred HHHHHHHHhcCcccCCceEEEEech----------hhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceee
Confidence 3334444432211100 0 0000 0124456777777777667788888888765422 11 1233688
Q ss_pred eccCCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhccCCchhHHH
Q 039990 227 ELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGLPLAARA 276 (1217)
Q Consensus 227 ~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~ 276 (1217)
++.+++.++....+.+...+ ...+.++.++..++|.|..+..
T Consensus 148 ~~~~~~~~~~~~~l~~~~~~--------~~~~~~~~l~~~~~g~~~~a~~ 189 (313)
T PRK05564 148 KLNRLSKEEIEKFISYKYND--------IKEEEKKSAIAFSDGIPGKVEK 189 (313)
T ss_pred eCCCcCHHHHHHHHHHHhcC--------CCHHHHHHHHHHcCCCHHHHHH
Confidence 99999999998877665311 1133477889999998865543
No 60
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.78 E-value=0.0014 Score=77.39 Aligned_cols=177 Identities=12% Similarity=0.118 Sum_probs=102.9
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhcc-ccC-------------------CCCCe
Q 039990 79 PAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDK-LTD-------------------DFKPK 138 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~-~~~-------------------~F~~~ 138 (1217)
.++||.+..++.|.+++..+. -...+.++|..|+||||+|+.+.+.. ... .|..+
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gR-----L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~Dv 90 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDY 90 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceE
Confidence 479999999999999987542 23567799999999999999887753 221 12234
Q ss_pred EEEEeCCcccHHHHHHHHHHHhhcCCCC-------CCChhHHHHHHHHHHHhcCcCHHHHHHhhcccCCCCCCcEEEEEc
Q 039990 139 AWVCVSDDFDILRISKAILESITRSSCG-------LTDLNSVQLKLKEAVFKKNKSYELWQALKSPFMAGAPGSRIIVTT 211 (1217)
Q Consensus 139 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~~gs~ilvTt 211 (1217)
+++..+....+.+ .+++++........ .++.+. -+...|+.+...+.......++|+||
T Consensus 91 iEIDAas~rgVDd-IReLIe~a~~~P~~gr~KVIIIDEah~-------------LT~~A~NALLKtLEEPP~~v~FILaT 156 (830)
T PRK07003 91 VEMDAASNRGVDE-MAALLERAVYAPVDARFKVYMIDEVHM-------------LTNHAFNAMLKTLEEPPPHVKFILAT 156 (830)
T ss_pred EEecccccccHHH-HHHHHHHHHhccccCCceEEEEeChhh-------------CCHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 4444333322222 22233322111100 001111 12244566655554444577777777
Q ss_pred CchH-HHHhh-CCCceEeccCCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhccCCc-hhHHHHH
Q 039990 212 RSMD-VALKM-GSGKNYELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGLP-LAARALG 278 (1217)
Q Consensus 212 R~~~-v~~~~-~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-Lai~~~~ 278 (1217)
++.. +.... .....++++.++.++..+.+.+.+...+ . .-..+..+.|++.++|.. -|+..+-
T Consensus 157 td~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~Eg-I---~id~eAL~lIA~~A~GsmRdALsLLd 222 (830)
T PRK07003 157 TDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEER-I---AFEPQALRLLARAAQGSMRDALSLTD 222 (830)
T ss_pred CChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcC-C---CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 7644 22111 2236899999999999999988763321 1 112456788999998754 5655533
No 61
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.78 E-value=0.0001 Score=78.87 Aligned_cols=148 Identities=20% Similarity=0.175 Sum_probs=76.8
Q ss_pred CcEEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCcccHHHHHHHHHHHh----hcCCCCCCChhHHHHHHHHH
Q 039990 105 NFRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDFDILRISKAILESI----TRSSCGLTDLNSVQLKLKEA 180 (1217)
Q Consensus 105 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l----~~~~~~~~~~~~~~~~l~~~ 180 (1217)
.+.-.-.||++|+||||||+.+... ....| ..++-..+-.+-++.++++. .......-=+++. .
T Consensus 47 ~l~SmIl~GPPG~GKTTlA~liA~~-~~~~f-----~~~sAv~~gvkdlr~i~e~a~~~~~~gr~tiLflDEI----H-- 114 (436)
T COG2256 47 HLHSMILWGPPGTGKTTLARLIAGT-TNAAF-----EALSAVTSGVKDLREIIEEARKNRLLGRRTILFLDEI----H-- 114 (436)
T ss_pred CCceeEEECCCCCCHHHHHHHHHHh-hCCce-----EEeccccccHHHHHHHHHHHHHHHhcCCceEEEEehh----h--
Confidence 3445568999999999999998876 34333 33333332222222222222 1100000000000 0
Q ss_pred HHhcCcCHHHHHHhhcccCCCCCCcEEEE--EcCchHHH---HhhCCCceEeccCCChHHHHHHHHHHHhCCC-CCC-CC
Q 039990 181 VFKKNKSYELWQALKSPFMAGAPGSRIIV--TTRSMDVA---LKMGSGKNYELKHLSDDDCWSVFLNHAFEGI-DTG-TQ 253 (1217)
Q Consensus 181 l~~~~~~~~~~~~l~~~~~~~~~gs~ilv--TtR~~~v~---~~~~~~~~~~l~~l~~~~~~~lf~~~~~~~~-~~~-~~ 253 (1217)
-.+..+-+. .+|.-..|.-|+| ||.++.+. .-.....++++++|+.++-.+++.+-+.... ... ..
T Consensus 115 ----RfnK~QQD~---lLp~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~ 187 (436)
T COG2256 115 ----RFNKAQQDA---LLPHVENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQI 187 (436)
T ss_pred ----hcChhhhhh---hhhhhcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCccc
Confidence 011112222 3455556887777 77776642 1223457999999999999999988432211 111 11
Q ss_pred C-chhhHHHHHHHhccCCc
Q 039990 254 G-NFESTRQRVVAKCKGLP 271 (1217)
Q Consensus 254 ~-~~~~~~~~i~~~~~g~P 271 (1217)
. -.+++.+.++..++|--
T Consensus 188 ~~i~~~a~~~l~~~s~GD~ 206 (436)
T COG2256 188 IVLDEEALDYLVRLSNGDA 206 (436)
T ss_pred ccCCHHHHHHHHHhcCchH
Confidence 1 12345667777777754
No 62
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.77 E-value=0.00026 Score=74.85 Aligned_cols=170 Identities=17% Similarity=0.199 Sum_probs=91.2
Q ss_pred hhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCcccHHHHHHHHHHHhhcCC
Q 039990 85 NEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDFDILRISKAILESITRSS 164 (1217)
Q Consensus 85 ~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 164 (1217)
+..++.+.+++.. .....|.|+|.+|+|||+||+.+++.. .......+++++..-.+. ..++++.+....
T Consensus 23 ~~~~~~l~~~~~~------~~~~~lll~G~~G~GKT~la~~~~~~~-~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~ 92 (226)
T TIGR03420 23 AELLAALRQLAAG------KGDRFLYLWGESGSGKSHLLQAACAAA-EERGKSAIYLPLAELAQA---DPEVLEGLEQAD 92 (226)
T ss_pred HHHHHHHHHHHhc------CCCCeEEEECCCCCCHHHHHHHHHHHH-HhcCCcEEEEeHHHHHHh---HHHHHhhcccCC
Confidence 4456666666542 233688899999999999999988763 223334556654332211 112222221110
Q ss_pred C-CCCChhHHHHHHHHHHHhcCcCHHHH-HHhhcccCC-CCCCcEEEEEcCchH---------HHHhhCCCceEeccCCC
Q 039990 165 C-GLTDLNSVQLKLKEAVFKKNKSYELW-QALKSPFMA-GAPGSRIIVTTRSMD---------VALKMGSGKNYELKHLS 232 (1217)
Q Consensus 165 ~-~~~~~~~~~~~l~~~l~~~~~~~~~~-~~l~~~~~~-~~~gs~ilvTtR~~~---------v~~~~~~~~~~~l~~l~ 232 (1217)
. -.++.+.+. ....| +.+...+.. ...+.+||+||+... +...+.....+++++++
T Consensus 93 lLvIDdi~~l~------------~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~ 160 (226)
T TIGR03420 93 LVCLDDVEAIA------------GQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLS 160 (226)
T ss_pred EEEEeChhhhc------------CChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCC
Confidence 0 011222111 00011 112211111 112347899888532 22233334689999999
Q ss_pred hHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhccCCchhHHHHHHH
Q 039990 233 DDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGLPLAARALGGL 280 (1217)
Q Consensus 233 ~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~ 280 (1217)
.++-..++...+-... . +-.++..+.|++.++|.|..+..+...
T Consensus 161 ~~e~~~~l~~~~~~~~-~---~~~~~~l~~L~~~~~gn~r~L~~~l~~ 204 (226)
T TIGR03420 161 DEEKIAALQSRAARRG-L---QLPDEVADYLLRHGSRDMGSLMALLDA 204 (226)
T ss_pred HHHHHHHHHHHHHHcC-C---CCCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 9999999887653211 1 122456778888888888877665443
No 63
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.76 E-value=0.00026 Score=81.73 Aligned_cols=171 Identities=17% Similarity=0.154 Sum_probs=90.8
Q ss_pred CccccchhhHHH---HHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCcccHHHHHHH
Q 039990 79 PAVYGRNEDKAR---ILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDFDILRISKA 155 (1217)
Q Consensus 79 ~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 155 (1217)
.++||++..+.. +.+++... ....+.++|++|+||||+|+.+++. .... |+.++....-.+..+.
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~------~~~~ilL~GppGtGKTtLA~~ia~~-~~~~-----~~~l~a~~~~~~~ir~ 79 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAG------RLSSMILWGPPGTGKTTLARIIAGA-TDAP-----FEALSAVTSGVKDLRE 79 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcC------CCceEEEECCCCCCHHHHHHHHHHH-hCCC-----EEEEecccccHHHHHH
Confidence 468888877655 66666442 3356788999999999999999876 3322 2222222111112222
Q ss_pred HHHHhhcCC----C---CCCChhHHHHHHHHHHHhcCcCHHHHHHhhcccCCCCCCcEEEE--EcCchHHH---HhhCCC
Q 039990 156 ILESITRSS----C---GLTDLNSVQLKLKEAVFKKNKSYELWQALKSPFMAGAPGSRIIV--TTRSMDVA---LKMGSG 223 (1217)
Q Consensus 156 i~~~l~~~~----~---~~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~~gs~ilv--TtR~~~v~---~~~~~~ 223 (1217)
+.+...... . -.++.+.+ +....+.+...+. .|..++| ||.+.... ......
T Consensus 80 ii~~~~~~~~~g~~~vL~IDEi~~l-------------~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~SR~ 143 (413)
T PRK13342 80 VIEEARQRRSAGRRTILFIDEIHRF-------------NKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALLSRA 143 (413)
T ss_pred HHHHHHHhhhcCCceEEEEechhhh-------------CHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHhccc
Confidence 322221100 0 01111111 1122333333332 2444444 34443221 111223
Q ss_pred ceEeccCCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhccCCchhHHHHH
Q 039990 224 KNYELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGLPLAARALG 278 (1217)
Q Consensus 224 ~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~ 278 (1217)
..+++.+++.++..+++.+.+..... ....-..+..+.|++.++|.+..+.-+.
T Consensus 144 ~~~~~~~ls~e~i~~lL~~~l~~~~~-~~i~i~~~al~~l~~~s~Gd~R~aln~L 197 (413)
T PRK13342 144 QVFELKPLSEEDIEQLLKRALEDKER-GLVELDDEALDALARLANGDARRALNLL 197 (413)
T ss_pred eeeEeCCCCHHHHHHHHHHHHHHhhc-CCCCCCHHHHHHHHHhCCCCHHHHHHHH
Confidence 68899999999999999886532111 0012235667889999999887664443
No 64
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.74 E-value=0.00099 Score=77.80 Aligned_cols=171 Identities=11% Similarity=0.130 Sum_probs=98.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhcc-cc-------------------CCCCCe
Q 039990 79 PAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDK-LT-------------------DDFKPK 138 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~-~~-------------------~~F~~~ 138 (1217)
.++||.+.....|..++.... -...+.++|+.|+||||+|+.+++.. .. +.|..+
T Consensus 15 ddVIGQe~vv~~L~~aI~~gr-----l~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDv 89 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGR-----LHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDL 89 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCce
Confidence 579999999999999987542 24688899999999999999987753 21 122233
Q ss_pred EEEEeCCcccHHHHHHHHHHHhhcCCCC-------CCChhHHHHHHHHHHHhcCcCHHHHHHhhcccCCCCCCcEEEEEc
Q 039990 139 AWVCVSDDFDILRISKAILESITRSSCG-------LTDLNSVQLKLKEAVFKKNKSYELWQALKSPFMAGAPGSRIIVTT 211 (1217)
Q Consensus 139 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~~gs~ilvTt 211 (1217)
+.+.++....+.++ ++++......... .++.+. -+...++.+...+.....+.++|++|
T Consensus 90 iEIDAAs~~~VddI-Reli~~~~y~P~~gk~KV~IIDEVh~-------------LS~~A~NALLKtLEEPP~~v~FILaT 155 (702)
T PRK14960 90 IEIDAASRTKVEDT-RELLDNVPYAPTQGRFKVYLIDEVHM-------------LSTHSFNALLKTLEEPPEHVKFLFAT 155 (702)
T ss_pred EEecccccCCHHHH-HHHHHHHhhhhhcCCcEEEEEechHh-------------cCHHHHHHHHHHHhcCCCCcEEEEEE
Confidence 44444332222222 2232222111000 000110 01233444544444444566777766
Q ss_pred CchH-HHHh-hCCCceEeccCCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhccCCch
Q 039990 212 RSMD-VALK-MGSGKNYELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGLPL 272 (1217)
Q Consensus 212 R~~~-v~~~-~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL 272 (1217)
.+.. +... ......+++++++.++..+.+.+.+-..+ ..-..+....|++.++|-+-
T Consensus 156 td~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEg----I~id~eAL~~IA~~S~GdLR 214 (702)
T PRK14960 156 TDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQ----IAADQDAIWQIAESAQGSLR 214 (702)
T ss_pred CChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHcCCCHH
Confidence 6532 2211 23346899999999999988887763322 11224567889999998663
No 65
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=0.0034 Score=70.03 Aligned_cols=194 Identities=12% Similarity=0.087 Sum_probs=116.4
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhccccCCCC-C-eEEEEeCCcccHHHHHHHHH
Q 039990 80 AVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDFK-P-KAWVCVSDDFDILRISKAIL 157 (1217)
Q Consensus 80 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~-~-~~wv~~~~~~~~~~~~~~i~ 157 (1217)
.+.+||++++++...|...-.+ ..+.-+.|+|.+|.|||+.++.|.+.. +.... . +++|.+-...+..+++..|+
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~~--~~p~n~~iyG~~GTGKT~~~~~v~~~l-~~~~~~~~~~yINc~~~~t~~~i~~~i~ 94 (366)
T COG1474 18 ELPHREEEINQLASFLAPALRG--ERPSNIIIYGPTGTGKTATVKFVMEEL-EESSANVEVVYINCLELRTPYQVLSKIL 94 (366)
T ss_pred cccccHHHHHHHHHHHHHHhcC--CCCccEEEECCCCCCHhHHHHHHHHHH-HhhhccCceEEEeeeeCCCHHHHHHHHH
Confidence 3999999999999888654332 223348899999999999999999873 33322 2 78999999999999999999
Q ss_pred HHhhcCCCCCCChhHHHHHHHHHHHhc-------CcCHHHH-----HHhhcccCCCC-CCcE--EEEEcCchHHHHhhC-
Q 039990 158 ESITRSSCGLTDLNSVQLKLKEAVFKK-------NKSYELW-----QALKSPFMAGA-PGSR--IIVTTRSMDVALKMG- 221 (1217)
Q Consensus 158 ~~l~~~~~~~~~~~~~~~~l~~~l~~~-------~~~~~~~-----~~l~~~~~~~~-~gs~--ilvTtR~~~v~~~~~- 221 (1217)
.+++..........+....+.+.+... .|..+.. +.+...+.... ..++ ||..+-+..+...+.
T Consensus 95 ~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~ 174 (366)
T COG1474 95 NKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDP 174 (366)
T ss_pred HHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhhh
Confidence 999854444455566666666666654 1111110 11111111111 1343 344444443332221
Q ss_pred ------CCceEeccCCChHHHHHHHHHHHhCC-CCCCCCCchhhHHHHHHHhcc-CCchhHHH
Q 039990 222 ------SGKNYELKHLSDDDCWSVFLNHAFEG-IDTGTQGNFESTRQRVVAKCK-GLPLAARA 276 (1217)
Q Consensus 222 ------~~~~~~l~~l~~~~~~~lf~~~~~~~-~~~~~~~~~~~~~~~i~~~~~-g~PLai~~ 276 (1217)
....+..++-+.+|-.+++..++-.. .....++..-+.+..++..-+ -.-.||..
T Consensus 175 rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidi 237 (366)
T COG1474 175 RVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDI 237 (366)
T ss_pred hhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHH
Confidence 11347788999999999999887322 122223333334444444444 44444443
No 66
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.74 E-value=0.00048 Score=77.90 Aligned_cols=172 Identities=14% Similarity=0.150 Sum_probs=99.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhcc-ccC-------------------CCCCe
Q 039990 79 PAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDK-LTD-------------------DFKPK 138 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~-~~~-------------------~F~~~ 138 (1217)
.+++|.+..++.+...+... .-...+.++|+.|+||||+|+.+++.. ... .+...
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~-----~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~ 90 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLG-----RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDL 90 (363)
T ss_pred hhccChHHHHHHHHHHHHcC-----CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 46899999999998888654 223577899999999999999988763 211 12223
Q ss_pred EEEEeCCcccHHHHHHHHHHHhhcCCCC-------CCChhHHHHHHHHHHHhcCcCHHHHHHhhcccCCCCCCcEEEEEc
Q 039990 139 AWVCVSDDFDILRISKAILESITRSSCG-------LTDLNSVQLKLKEAVFKKNKSYELWQALKSPFMAGAPGSRIIVTT 211 (1217)
Q Consensus 139 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~~gs~ilvTt 211 (1217)
.++..+....+.+ .+++.+.+...... .++.+.+ ....++.+...+.......++|++|
T Consensus 91 ~~~~~~~~~~v~~-ir~i~~~~~~~p~~~~~kviIIDEa~~l-------------~~~a~naLLk~lEe~~~~~~fIl~t 156 (363)
T PRK14961 91 IEIDAASRTKVEE-MREILDNIYYSPSKSRFKVYLIDEVHML-------------SRHSFNALLKTLEEPPQHIKFILAT 156 (363)
T ss_pred EEecccccCCHHH-HHHHHHHHhcCcccCCceEEEEEChhhc-------------CHHHHHHHHHHHhcCCCCeEEEEEc
Confidence 3443322222222 33444433211110 0111111 1234555555554444566667666
Q ss_pred Cch-HHHHhh-CCCceEeccCCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhccCCchh
Q 039990 212 RSM-DVALKM-GSGKNYELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGLPLA 273 (1217)
Q Consensus 212 R~~-~v~~~~-~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 273 (1217)
.+. .+.... +....+++.+++.++..+.+.+.+...+ ..-.++.++.|++.++|.|-.
T Consensus 157 ~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g----~~i~~~al~~ia~~s~G~~R~ 216 (363)
T PRK14961 157 TDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKES----IDTDEYALKLIAYHAHGSMRD 216 (363)
T ss_pred CChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHcCCCHHH
Confidence 543 332222 2236889999999999988887663321 111245678899999997743
No 67
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.73 E-value=1.3e-06 Score=96.09 Aligned_cols=158 Identities=20% Similarity=0.255 Sum_probs=70.0
Q ss_pred cccccccCCCCcccEEEEcCCCCCccccccCCCCCCcceEEecCCCCCcccCCCCCCCCcceEEEccCcCcccCCCCCCC
Q 039990 970 ESIAERFHDDACLRSIRLSYCKNLKSLPKGLNNLSHLHRRSIQGCHNLVSLPEDALPSNVVDVSIEDCDKLKAPLPTGKL 1049 (1217)
Q Consensus 970 ~~l~~~~~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~l 1049 (1217)
..+|.....+..|+.+.++. +-+..+|..+.++..|..|+++. +++..+|.....--|+.|.+++|.....|.+++.+
T Consensus 88 ~elp~~~~~f~~Le~liLy~-n~~r~ip~~i~~L~~lt~l~ls~-NqlS~lp~~lC~lpLkvli~sNNkl~~lp~~ig~~ 165 (722)
T KOG0532|consen 88 SELPEEACAFVSLESLILYH-NCIRTIPEAICNLEALTFLDLSS-NQLSHLPDGLCDLPLKVLIVSNNKLTSLPEEIGLL 165 (722)
T ss_pred ccCchHHHHHHHHHHHHHHh-ccceecchhhhhhhHHHHhhhcc-chhhcCChhhhcCcceeEEEecCccccCCcccccc
Confidence 33444333344444444444 23444455555555555555554 23444443222223333433333333333344444
Q ss_pred CCcceEeeccCCCccccCCCCCCCCCCeEEecCCCCCccccccccccCCcccceeeccCCCccccccccccCCCCCCcce
Q 039990 1050 SSLQLLTLIECPGIVFFPEEGLSTNLTDLEISGDNIYKPLVKWGFDKFSSLRKHCINRCSDAVSFPEVEKGVILPTSLTL 1129 (1217)
Q Consensus 1050 ~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~ 1129 (1217)
+.|..|+.+.|... ++|. .+..+.+|+.|.++.| .+..+|++.. .-.|..
T Consensus 166 ~tl~~ld~s~nei~-slps------------------------ql~~l~slr~l~vrRn-~l~~lp~El~----~LpLi~ 215 (722)
T KOG0532|consen 166 PTLAHLDVSKNEIQ-SLPS------------------------QLGYLTSLRDLNVRRN-HLEDLPEELC----SLPLIR 215 (722)
T ss_pred hhHHHhhhhhhhhh-hchH------------------------HhhhHHHHHHHHHhhh-hhhhCCHHHh----CCceee
Confidence 55555555543222 2221 2334444444444442 2333333111 123555
Q ss_pred EeecCCCCCcccCccccCCccccccccccccc
Q 039990 1130 IRISDFPKLERLSSKGFHYLLSLEQLKVSSCP 1161 (1217)
Q Consensus 1130 L~l~~c~~l~~l~~~~~~~l~~L~~L~l~~c~ 1161 (1217)
|+++ ||++..|| ..|.++..|++|.+.+||
T Consensus 216 lDfS-cNkis~iP-v~fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 216 LDFS-CNKISYLP-VDFRKMRHLQVLQLENNP 245 (722)
T ss_pred eecc-cCceeecc-hhhhhhhhheeeeeccCC
Confidence 5555 36666666 556666666666666663
No 68
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.73 E-value=2.6e-05 Score=79.67 Aligned_cols=48 Identities=27% Similarity=0.421 Sum_probs=32.6
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhcc
Q 039990 80 AVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDK 130 (1217)
Q Consensus 80 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 130 (1217)
.||||+++++++...+..... ...+.+.|+|.+|+|||+|+++++...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~---~~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQS---GSPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS--------EEE-B-TTSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHc---CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 489999999999999952211 456899999999999999999988874
No 69
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.70 E-value=1e-06 Score=91.47 Aligned_cols=84 Identities=10% Similarity=0.072 Sum_probs=52.4
Q ss_pred CCccEEeecCCCCCc----ccccccccccCcceEeeccCC----------CccccccccCCCCcccEEEEcCCCCCcccc
Q 039990 932 VTLKCIQIEDCSNFK----VLTSECQLSVAVEELTIDSCS----------NIESIAERFHDDACLRSIRLSYCKNLKSLP 997 (1217)
Q Consensus 932 ~~L~~L~l~~~~~l~----~~~~~~~~l~~L~~L~l~~~~----------~l~~l~~~~~~l~~L~~L~L~~c~~l~~l~ 997 (1217)
.+++.+++++|..-. .+...+.+.+.|+..++++.- .+..+...+..++.|++|+||+|-.-..-+
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~ 109 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGI 109 (382)
T ss_pred CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccch
Confidence 467888888876543 234445566677877777621 112223345557789999999865322222
Q ss_pred c----cCCCCCCcceEEecCCC
Q 039990 998 K----GLNNLSHLHRRSIQGCH 1015 (1217)
Q Consensus 998 ~----~l~~l~~L~~L~l~~c~ 1015 (1217)
. -+.++.+|++|.+.+|-
T Consensus 110 ~~l~~ll~s~~~L~eL~L~N~G 131 (382)
T KOG1909|consen 110 RGLEELLSSCTDLEELYLNNCG 131 (382)
T ss_pred HHHHHHHHhccCHHHHhhhcCC
Confidence 2 24568888888888875
No 70
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.68 E-value=3.3e-05 Score=55.89 Aligned_cols=33 Identities=39% Similarity=0.507 Sum_probs=15.8
Q ss_pred cCcEEecccccccccccccccccccccEEeecCC
Q 039990 516 NLEILILSYCWCLLKLPSSIGNLVNLHHLDIEGA 549 (1217)
Q Consensus 516 ~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~ 549 (1217)
+|++|++++| .+..+|..+++|++|++|++++|
T Consensus 2 ~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSNN-QITDLPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSS
T ss_pred cceEEEccCC-CCcccCchHhCCCCCCEEEecCC
Confidence 4455555554 44455544555555555555555
No 71
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.68 E-value=0.00075 Score=71.10 Aligned_cols=152 Identities=16% Similarity=0.184 Sum_probs=82.8
Q ss_pred EEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCcccHHHHHHHHHHHhhcCCC-CCCChhHHHHHHHHHHHhcC
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDFDILRISKAILESITRSSC-GLTDLNSVQLKLKEAVFKKN 185 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-~~~~~~~~~~~l~~~l~~~~ 185 (1217)
+.+.|+|+.|+|||+||+++++.. ...-..+.++.+..... ...++.+.+..... -.++.+..
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~-~~~~~~v~y~~~~~~~~---~~~~~~~~~~~~dlliiDdi~~~------------ 109 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAEL-SQRGRAVGYVPLDKRAW---FVPEVLEGMEQLSLVCIDNIECI------------ 109 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH-HhCCCeEEEEEHHHHhh---hhHHHHHHhhhCCEEEEeChhhh------------
Confidence 578899999999999999988763 22223456666543211 11111111110000 00111100
Q ss_pred cCHHHHHH-hhcccCCC-CCC-cEEEEEcCch---------HHHHhhCCCceEeccCCChHHHHHHHHHHHhCCCCCCCC
Q 039990 186 KSYELWQA-LKSPFMAG-APG-SRIIVTTRSM---------DVALKMGSGKNYELKHLSDDDCWSVFLNHAFEGIDTGTQ 253 (1217)
Q Consensus 186 ~~~~~~~~-l~~~~~~~-~~g-s~ilvTtR~~---------~v~~~~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~ 253 (1217)
.....|+. +...+... ..| .++|+||+.. +...++....++++++++.++-.+++.+++...+ .
T Consensus 110 ~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~-~--- 185 (235)
T PRK08084 110 AGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRG-F--- 185 (235)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcC-C---
Confidence 01122332 11211110 123 4799999754 3344555667999999999999999988764321 1
Q ss_pred CchhhHHHHHHHhccCCchhHHHHH
Q 039990 254 GNFESTRQRVVAKCKGLPLAARALG 278 (1217)
Q Consensus 254 ~~~~~~~~~i~~~~~g~PLai~~~~ 278 (1217)
.-.+++..-|++.+.|-.-++..+-
T Consensus 186 ~l~~~v~~~L~~~~~~d~r~l~~~l 210 (235)
T PRK08084 186 ELPEDVGRFLLKRLDREMRTLFMTL 210 (235)
T ss_pred CCCHHHHHHHHHhhcCCHHHHHHHH
Confidence 1225677888888887655554433
No 72
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.67 E-value=0.00067 Score=81.69 Aligned_cols=191 Identities=18% Similarity=0.148 Sum_probs=105.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhcc-ccCCC---CCeEEEEeCC---cccHHH
Q 039990 79 PAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDK-LTDDF---KPKAWVCVSD---DFDILR 151 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~-~~~~F---~~~~wv~~~~---~~~~~~ 151 (1217)
++++|++..+..+.+.+... ....+.|+|.+|+||||+|+.+++.. ....+ ...-|+.+.. ..+...
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~------~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~ 227 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASP------FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPRE 227 (615)
T ss_pred HhceeCcHHHHHHHHHHhcC------CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHH
Confidence 46899999998888777432 23579999999999999999988653 22222 2334555432 112222
Q ss_pred HHHH---------------HHHHhhcCCC----------------CCCC-hhHHHHHHHHHHHhc----------CcCHH
Q 039990 152 ISKA---------------ILESITRSSC----------------GLTD-LNSVQLKLKEAVFKK----------NKSYE 189 (1217)
Q Consensus 152 ~~~~---------------i~~~l~~~~~----------------~~~~-~~~~~~~l~~~l~~~----------~~~~~ 189 (1217)
+... .+...+.... +... ....+..+.+.+.++ ..+..
T Consensus 228 i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~ 307 (615)
T TIGR02903 228 VTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPN 307 (615)
T ss_pred HhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcc
Confidence 2111 1111111000 0111 123456666666654 11234
Q ss_pred HHHHhhcccCCCCCCcEEEE--EcCchHH-HHhh-CCCceEeccCCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHH
Q 039990 190 LWQALKSPFMAGAPGSRIIV--TTRSMDV-ALKM-GSGKNYELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVA 265 (1217)
Q Consensus 190 ~~~~l~~~~~~~~~gs~ilv--TtR~~~v-~~~~-~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~ 265 (1217)
.|+.+...+....+...|+| ||++... ...+ .....+.+.+++.+|.++++.+.+-... .. -..++.+.|.+
T Consensus 308 ~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~-v~---ls~eal~~L~~ 383 (615)
T TIGR02903 308 VPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKIN-VH---LAAGVEELIAR 383 (615)
T ss_pred cchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcC-CC---CCHHHHHHHHH
Confidence 57777776666655555665 6665432 1111 1224678899999999999998764221 11 11344455555
Q ss_pred hccCCchhHHHHHH
Q 039990 266 KCKGLPLAARALGG 279 (1217)
Q Consensus 266 ~~~g~PLai~~~~~ 279 (1217)
....-+-|+..++.
T Consensus 384 ys~~gRraln~L~~ 397 (615)
T TIGR02903 384 YTIEGRKAVNILAD 397 (615)
T ss_pred CCCcHHHHHHHHHH
Confidence 55444555554443
No 73
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.64 E-value=0.0018 Score=68.16 Aligned_cols=192 Identities=14% Similarity=0.107 Sum_probs=112.4
Q ss_pred CCccccch---hhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhccccCCCC------CeEEEEeCCccc
Q 039990 78 EPAVYGRN---EDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDFK------PKAWVCVSDDFD 148 (1217)
Q Consensus 78 ~~~~vGr~---~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~------~~~wv~~~~~~~ 148 (1217)
.+.+||-. +.++++.+++..... .+..-+.|+|.+|+|||++++++.+.. ...++ .++.|.+...++
T Consensus 33 ~~rWIgY~~A~~~L~~L~~Ll~~P~~---~Rmp~lLivG~snnGKT~Ii~rF~~~h-p~~~d~~~~~~PVv~vq~P~~p~ 108 (302)
T PF05621_consen 33 ADRWIGYPRAKEALDRLEELLEYPKR---HRMPNLLIVGDSNNGKTMIIERFRRLH-PPQSDEDAERIPVVYVQMPPEPD 108 (302)
T ss_pred cCCeecCHHHHHHHHHHHHHHhCCcc---cCCCceEEecCCCCcHHHHHHHHHHHC-CCCCCCCCccccEEEEecCCCCC
Confidence 44566643 334555555544322 556779999999999999999988653 22221 466788888999
Q ss_pred HHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhc------CcCH-----------HHHHHhhcccCCCCCCcEEEEEc
Q 039990 149 ILRISKAILESITRSSCGLTDLNSVQLKLKEAVFKK------NKSY-----------ELWQALKSPFMAGAPGSRIIVTT 211 (1217)
Q Consensus 149 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~------~~~~-----------~~~~~l~~~~~~~~~gs~ilvTt 211 (1217)
...++..|+.+++.+.........+.......+..- +|+. ...-.....+.+.-.=+-|.|-|
T Consensus 109 ~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt 188 (302)
T PF05621_consen 109 ERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGT 188 (302)
T ss_pred hHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEecc
Confidence 999999999999988766666665555544444332 2221 11112222333333445566666
Q ss_pred CchHHHHhh-----CCCceEeccCCChHHHH-HHHHHHH--hCCCCCCCCCchhhHHHHHHHhccCCchhH
Q 039990 212 RSMDVALKM-----GSGKNYELKHLSDDDCW-SVFLNHA--FEGIDTGTQGNFESTRQRVVAKCKGLPLAA 274 (1217)
Q Consensus 212 R~~~v~~~~-----~~~~~~~l~~l~~~~~~-~lf~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 274 (1217)
++..-+-.. +.-.++.++....++-. .|+.... ..-... ..-...++++.|.+.++|+.=-+
T Consensus 189 ~~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~-S~l~~~~la~~i~~~s~G~iG~l 258 (302)
T PF05621_consen 189 REAYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKP-SNLASPELARRIHERSEGLIGEL 258 (302)
T ss_pred HHHHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCC-CCCCCHHHHHHHHHHcCCchHHH
Confidence 653332111 11246677777765544 4433221 111111 12234678999999999987444
No 74
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.63 E-value=0.0005 Score=82.84 Aligned_cols=176 Identities=12% Similarity=0.135 Sum_probs=100.1
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhcc-ccCC-------------------CCCe
Q 039990 79 PAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDK-LTDD-------------------FKPK 138 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~-~~~~-------------------F~~~ 138 (1217)
.++||.+..+..|.+++..+. -...+.++|..|+||||+|+.+++.. .... |..+
T Consensus 16 ddIIGQe~Iv~~LknaI~~~r-----l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dv 90 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQR-----LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDL 90 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceE
Confidence 479999999999988887542 23567899999999999999998764 2211 1222
Q ss_pred EEEEeCCcccHHHHHHHHHHHhhcCCCC-------CCChhHHHHHHHHHHHhcCcCHHHHHHhhcccCCCCCCcEEEEEc
Q 039990 139 AWVCVSDDFDILRISKAILESITRSSCG-------LTDLNSVQLKLKEAVFKKNKSYELWQALKSPFMAGAPGSRIIVTT 211 (1217)
Q Consensus 139 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~~gs~ilvTt 211 (1217)
+++.......+.+ .++|.+.+...... .++.+ .-..+.++.+...+.......++|++|
T Consensus 91 iEidAas~~kVDd-IReLie~v~~~P~~gk~KViIIDEAh-------------~LT~eAqNALLKtLEEPP~~vrFILaT 156 (944)
T PRK14949 91 IEVDAASRTKVDD-TRELLDNVQYRPSRGRFKVYLIDEVH-------------MLSRSSFNALLKTLEEPPEHVKFLLAT 156 (944)
T ss_pred EEeccccccCHHH-HHHHHHHHHhhhhcCCcEEEEEechH-------------hcCHHHHHHHHHHHhccCCCeEEEEEC
Confidence 3333322122221 22333332211000 00011 112344555555554434456655555
Q ss_pred Cc-hHHHHh-hCCCceEeccCCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhccCCch-hHHHH
Q 039990 212 RS-MDVALK-MGSGKNYELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGLPL-AARAL 277 (1217)
Q Consensus 212 R~-~~v~~~-~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~ 277 (1217)
.+ ..+... ......|++++++.++..+.+.+.+-... ..-..+.++.|++.++|.|- |+..+
T Consensus 157 Te~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~Eg----I~~edeAL~lIA~~S~Gd~R~ALnLL 221 (944)
T PRK14949 157 TDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQ----LPFEAEALTLLAKAANGSMRDALSLT 221 (944)
T ss_pred CCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 44 333322 22336899999999999988887653211 12234578889999999774 44443
No 75
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.61 E-value=0.00015 Score=69.04 Aligned_cols=106 Identities=15% Similarity=0.185 Sum_probs=71.7
Q ss_pred cEEEEEEccCCchHHHHHHHHHhcccc----CCCCCeEEEEeCCcccHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHH
Q 039990 106 FRVIPLVGMGGIGKTTLAQEVYNDKLT----DDFKPKAWVCVSDDFDILRISKAILESITRSSCGLTDLNSVQLKLKEAV 181 (1217)
Q Consensus 106 ~~vv~I~G~gGiGKTtLA~~v~~~~~~----~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 181 (1217)
-+++.|+|.+|+|||++++++.+.... ..-..++|+.+....+...+...|+++++.......+.+++...+.+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 368999999999999999998876311 0123567999888889999999999999988766556677777777777
Q ss_pred Hhc------CcCHHHH------HHhhcccCCCCCCcEEEEEcCc
Q 039990 182 FKK------NKSYELW------QALKSPFMAGAPGSRIIVTTRS 213 (1217)
Q Consensus 182 ~~~------~~~~~~~------~~l~~~~~~~~~gs~ilvTtR~ 213 (1217)
... +|+.+.+ +.++.... ..+.+||+..+.
T Consensus 84 ~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 666 3333333 34433333 567778777665
No 76
>PRK08727 hypothetical protein; Validated
Probab=97.60 E-value=0.0023 Score=67.27 Aligned_cols=148 Identities=18% Similarity=0.117 Sum_probs=81.0
Q ss_pred EEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCcccHHHHHHHHHHHhhcCCC-CCCChhHHHHHHHHHHHhcC
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDFDILRISKAILESITRSSC-GLTDLNSVQLKLKEAVFKKN 185 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-~~~~~~~~~~~l~~~l~~~~ 185 (1217)
..+.|+|..|+|||.||+++++... .....+.|+++.+.. ..+.++++.+..... -.+|.+...
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~-~~~~~~~y~~~~~~~---~~~~~~~~~l~~~dlLiIDDi~~l~----------- 106 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAE-QAGRSSAYLPLQAAA---GRLRDALEALEGRSLVALDGLESIA----------- 106 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH-HcCCcEEEEeHHHhh---hhHHHHHHHHhcCCEEEEeCccccc-----------
Confidence 4699999999999999999987633 333356677643311 112222222221110 011111000
Q ss_pred cCHHHHHH-hhcccCC-CCCCcEEEEEcCchH---------HHHhhCCCceEeccCCChHHHHHHHHHHHhCCCCCCCCC
Q 039990 186 KSYELWQA-LKSPFMA-GAPGSRIIVTTRSMD---------VALKMGSGKNYELKHLSDDDCWSVFLNHAFEGIDTGTQG 254 (1217)
Q Consensus 186 ~~~~~~~~-l~~~~~~-~~~gs~ilvTtR~~~---------v~~~~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~ 254 (1217)
....|+. +...+.. ...|..||+|++... +..++.....+++++++.++-.+++.+++.... . .
T Consensus 107 -~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~-l---~ 181 (233)
T PRK08727 107 -GQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRRG-L---A 181 (233)
T ss_pred -CChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHcC-C---C
Confidence 0011211 1111111 123566999998532 223334456899999999999999999775421 1 1
Q ss_pred chhhHHHHHHHhccCCchhH
Q 039990 255 NFESTRQRVVAKCKGLPLAA 274 (1217)
Q Consensus 255 ~~~~~~~~i~~~~~g~PLai 274 (1217)
-.++....|++.++|-.-.+
T Consensus 182 l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 182 LDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred CCHHHHHHHHHhCCCCHHHH
Confidence 22456778888887655444
No 77
>PLN03150 hypothetical protein; Provisional
Probab=97.58 E-value=7.1e-05 Score=90.92 Aligned_cols=106 Identities=22% Similarity=0.249 Sum_probs=75.6
Q ss_pred cceEEEcCCCCcccccccccccccChhhhcccccCcEEecccccccccccccccccccccEEeecCCccccccCCCCccC
Q 039990 483 KLRVLSLEKDNIAEVPISIGCLKCLPEAITSLFNLEILILSYCWCLLKLPSSIGNLVNLHHLDIEGADRLCELPLGMKEL 562 (1217)
Q Consensus 483 ~Lr~L~L~~~~i~~lp~~i~~L~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L 562 (1217)
.++.|+|++|.+.. .+|.+|++|.+|++|+|++|.....+|..++.+++|++|++++|.....+|..+++|
T Consensus 419 ~v~~L~L~~n~L~g---------~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L 489 (623)
T PLN03150 419 FIDGLGLDNQGLRG---------FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQL 489 (623)
T ss_pred EEEEEECCCCCccc---------cCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcC
Confidence 47788888888765 456788888899999999884445788888889999999998884444778888888
Q ss_pred cccccccccccccChhhhHHHHhcC-CCCCCeEEEEec
Q 039990 563 KCLRTLTDFINVIDSQEANEAMLRG-KKDLEVLKLVWS 599 (1217)
Q Consensus 563 ~~L~~L~~~~n~~~~~~~~~~~l~~-l~~L~~L~l~~~ 599 (1217)
++|++|++..|...... +..+.. ..++..+++..+
T Consensus 490 ~~L~~L~Ls~N~l~g~i--P~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 490 TSLRILNLNGNSLSGRV--PAALGGRLLHRASFNFTDN 525 (623)
T ss_pred CCCCEEECcCCcccccC--ChHHhhccccCceEEecCC
Confidence 99999888776554322 112222 245556666533
No 78
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.58 E-value=0.00015 Score=84.41 Aligned_cols=173 Identities=14% Similarity=0.114 Sum_probs=99.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhcc-ccCCCCCeE------------------
Q 039990 79 PAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDK-LTDDFKPKA------------------ 139 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~-~~~~F~~~~------------------ 139 (1217)
.+++|.+...+.|..++.... -...+.++|++|+||||+|+.+++.. ..+.++..+
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~-----l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~ 88 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGR-----LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVL 88 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceE
Confidence 468999998888888887642 23577899999999999999988764 222232223
Q ss_pred EEEeCCcccHHHHHHHHHHHhhcCCC-C------CCChhHHHHHHHHHHHhcCcCHHHHHHhhcccCCCCCCcEEEEEcC
Q 039990 140 WVCVSDDFDILRISKAILESITRSSC-G------LTDLNSVQLKLKEAVFKKNKSYELWQALKSPFMAGAPGSRIIVTTR 212 (1217)
Q Consensus 140 wv~~~~~~~~~~~~~~i~~~l~~~~~-~------~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~~gs~ilvTtR 212 (1217)
++..+....+.. .+++.+.+..... . .++.+ ....+.++.+...+......+.+|++|.
T Consensus 89 el~~~~~~~vd~-iR~l~~~~~~~p~~~~~kVVIIDEad-------------~ls~~a~naLLk~LEep~~~t~~Il~t~ 154 (504)
T PRK14963 89 EIDAASNNSVED-VRDLREKVLLAPLRGGRKVYILDEAH-------------MMSKSAFNALLKTLEEPPEHVIFILATT 154 (504)
T ss_pred EecccccCCHHH-HHHHHHHHhhccccCCCeEEEEECcc-------------ccCHHHHHHHHHHHHhCCCCEEEEEEcC
Confidence 333222222111 1222222211100 0 00000 1123445666665554444555555554
Q ss_pred c-hHHHHhh-CCCceEeccCCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhccCCchhH
Q 039990 213 S-MDVALKM-GSGKNYELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGLPLAA 274 (1217)
Q Consensus 213 ~-~~v~~~~-~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 274 (1217)
. ..+.... .....+++.+++.++..+.+.+.+-..+- .-..+.+..|++.++|.+--+
T Consensus 155 ~~~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi----~i~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 155 EPEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGR----EAEPEALQLVARLADGAMRDA 214 (504)
T ss_pred ChhhCChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHH
Confidence 3 3332222 23468999999999999999887743221 112457889999999987433
No 79
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.56 E-value=2e-05 Score=91.45 Aligned_cols=195 Identities=18% Similarity=0.194 Sum_probs=99.7
Q ss_pred ccccccCcceEeeccCCCccccccccCCCCcccEEEEcCCCCCccccccCCCCCCcceEEecCCCCCcccCCCCCCCCcc
Q 039990 951 ECQLSVAVEELTIDSCSNIESIAERFHDDACLRSIRLSYCKNLKSLPKGLNNLSHLHRRSIQGCHNLVSLPEDALPSNVV 1030 (1217)
Q Consensus 951 ~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~ 1030 (1217)
.+..+.+|+.|++.++ .++.+...+..+++|++|++++ +.+..+ .++..++.|+.|++++| .++.+.......+|+
T Consensus 90 ~l~~~~~l~~l~l~~n-~i~~i~~~l~~~~~L~~L~ls~-N~I~~i-~~l~~l~~L~~L~l~~N-~i~~~~~~~~l~~L~ 165 (414)
T KOG0531|consen 90 HLSKLKSLEALDLYDN-KIEKIENLLSSLVNLQVLDLSF-NKITKL-EGLSTLTLLKELNLSGN-LISDISGLESLKSLK 165 (414)
T ss_pred ccccccceeeeecccc-chhhcccchhhhhcchheeccc-cccccc-cchhhccchhhheeccC-cchhccCCccchhhh
Confidence 3556677777777774 4444444344467777777777 445555 35666777777777774 466665544355666
Q ss_pred eEEEccCcCcccCCC--CCCCCCcceEeeccCCCccccCCCCCCCCCCeEEecCCCCCccccccccccCCc--ccceeec
Q 039990 1031 DVSIEDCDKLKAPLP--TGKLSSLQLLTLIECPGIVFFPEEGLSTNLTDLEISGDNIYKPLVKWGFDKFSS--LRKHCIN 1106 (1217)
Q Consensus 1031 ~L~l~~~~~l~~~~~--~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~--L~~L~l~ 1106 (1217)
.+++++|..... .+ ...+.+|+.+++.++.. ..+........+..+++..|.....-+ +..+.. |+.+.++
T Consensus 166 ~l~l~~n~i~~i-e~~~~~~~~~l~~l~l~~n~i-~~i~~~~~~~~l~~~~l~~n~i~~~~~---l~~~~~~~L~~l~l~ 240 (414)
T KOG0531|consen 166 LLDLSYNRIVDI-ENDELSELISLEELDLGGNSI-REIEGLDLLKKLVLLSLLDNKISKLEG---LNELVMLHLRELYLS 240 (414)
T ss_pred cccCCcchhhhh-hhhhhhhccchHHHhccCCch-hcccchHHHHHHHHhhcccccceeccC---cccchhHHHHHHhcc
Confidence 666666665554 22 25566666666665432 222211222333333444443332111 112222 5666666
Q ss_pred cCCCccccccccccCCCCCCcceEeecCCCCCcccCccccCCccccccccccccc
Q 039990 1107 RCSDAVSFPEVEKGVILPTSLTLIRISDFPKLERLSSKGFHYLLSLEQLKVSSCP 1161 (1217)
Q Consensus 1107 ~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~L~~L~l~~c~ 1161 (1217)
+++.- ..+ .++..+..+..|++.+ +++..+. .+...+.+..+....++
T Consensus 241 ~n~i~-~~~---~~~~~~~~l~~l~~~~-n~~~~~~--~~~~~~~~~~~~~~~~~ 288 (414)
T KOG0531|consen 241 GNRIS-RSP---EGLENLKNLPVLDLSS-NRISNLE--GLERLPKLSELWLNDNK 288 (414)
T ss_pred cCccc-ccc---ccccccccccccchhh-ccccccc--cccccchHHHhccCcch
Confidence 64322 111 1222345566666655 4444443 34444555555555553
No 80
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.56 E-value=0.0006 Score=77.45 Aligned_cols=179 Identities=15% Similarity=0.097 Sum_probs=89.8
Q ss_pred CccccchhhHHHHHHHHhcCCCC-------CCCCcEEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCcc----
Q 039990 79 PAVYGRNEDKARILDMVLKNDPS-------DAANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDF---- 147 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~~---- 147 (1217)
.+++|+++.++++.+.+...-.. +-..++-|.++|++|+|||++|+++++. ....| +.+....
T Consensus 122 ~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~-l~~~~-----~~v~~~~l~~~ 195 (364)
T TIGR01242 122 EDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE-TNATF-----IRVVGSELVRK 195 (364)
T ss_pred HHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh-CCCCE-----EecchHHHHHH
Confidence 46889999999998877432110 0023456899999999999999999986 33333 2221110
Q ss_pred ---cHHHHHHHHHHHhhcCCC---CCCChhHHHHHHHHHHHhc-CcCH---HHHHHhhcccC--CCCCCcEEEEEcCchH
Q 039990 148 ---DILRISKAILESITRSSC---GLTDLNSVQLKLKEAVFKK-NKSY---ELWQALKSPFM--AGAPGSRIIVTTRSMD 215 (1217)
Q Consensus 148 ---~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~~l~~~-~~~~---~~~~~l~~~~~--~~~~gs~ilvTtR~~~ 215 (1217)
......+.+.+....... -.++.+.+... ..... ..+. ..+..+...+. ....+.+||.||....
T Consensus 196 ~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~---~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~ 272 (364)
T TIGR01242 196 YIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAK---RTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPD 272 (364)
T ss_pred hhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccc---cccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChh
Confidence 011112222222211111 01111111000 00000 0011 11222221111 1124677888887543
Q ss_pred HH-----HhhCCCceEeccCCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhccCCc
Q 039990 216 VA-----LKMGSGKNYELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGLP 271 (1217)
Q Consensus 216 v~-----~~~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 271 (1217)
.. ....-+..++++..+.++..++|..++.+..- .... ....+++.+.|..
T Consensus 273 ~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l-~~~~----~~~~la~~t~g~s 328 (364)
T TIGR01242 273 ILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKL-AEDV----DLEAIAKMTEGAS 328 (364)
T ss_pred hCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCC-CccC----CHHHHHHHcCCCC
Confidence 21 11122468899999999999999988744321 1111 2456777777664
No 81
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.54 E-value=0.00095 Score=77.99 Aligned_cols=179 Identities=17% Similarity=0.170 Sum_probs=101.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhcc-cc-------------------CCCCCe
Q 039990 79 PAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDK-LT-------------------DDFKPK 138 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~-~~-------------------~~F~~~ 138 (1217)
.+++|.+..+..+...+.... ....+.++|+.|+||||+|+.+++.. .. ..|...
T Consensus 16 ~diiGq~~~v~~L~~~i~~~r-----l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dl 90 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQK-----VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDL 90 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCce
Confidence 468999999999998886542 23567899999999999999988753 11 123344
Q ss_pred EEEEeCCcccHHHHHHHHHHHhhcCCC-C------CCChhHHHHHHHHHHHhcCcCHHHHHHhhcccCCCCCCcEEE-EE
Q 039990 139 AWVCVSDDFDILRISKAILESITRSSC-G------LTDLNSVQLKLKEAVFKKNKSYELWQALKSPFMAGAPGSRII-VT 210 (1217)
Q Consensus 139 ~wv~~~~~~~~~~~~~~i~~~l~~~~~-~------~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~~gs~il-vT 210 (1217)
+++.......+.++ +++++.+..... . .++.+ .-+...++.+...+......+++| +|
T Consensus 91 ieidaas~~gvd~i-r~ii~~~~~~p~~g~~kViIIDEa~-------------~ls~~a~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 91 IEIDAASRTGVEET-KEILDNIQYMPSQGRYKVYLIDEVH-------------MLSKQSFNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred EEeecccccCHHHH-HHHHHHHHhhhhcCCcEEEEEechh-------------hccHHHHHHHHHHHhcCCCCceEEEEE
Confidence 44443333322221 223222221100 0 00000 112344555665555444555555 55
Q ss_pred cCchHHHHh-hCCCceEeccCCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhccCCc-hhHHHHHHH
Q 039990 211 TRSMDVALK-MGSGKNYELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGLP-LAARALGGL 280 (1217)
Q Consensus 211 tR~~~v~~~-~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-Lai~~~~~~ 280 (1217)
|....+... ......+++++++.++..+.+.+.+-..+ . .-..+....|++.++|-+ -|+..+-.+
T Consensus 157 td~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~eg-i---~~e~~Al~~Ia~~s~GdlR~alnlLek~ 224 (546)
T PRK14957 157 TDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKEN-I---NSDEQSLEYIAYHAKGSLRDALSLLDQA 224 (546)
T ss_pred CChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcC-C---CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 544444322 22346899999999998888777553211 1 122456678899999855 555555433
No 82
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.54 E-value=0.0018 Score=67.89 Aligned_cols=124 Identities=15% Similarity=0.164 Sum_probs=74.0
Q ss_pred CCcEEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCcccHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHh
Q 039990 104 ANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDFDILRISKAILESITRSSCGLTDLNSVQLKLKEAVFK 183 (1217)
Q Consensus 104 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 183 (1217)
++..-+.+||++|+||||||+.+.... +.+ ...||..+....-..-.++|.++-.... ..-..
T Consensus 160 ~~ipSmIlWGppG~GKTtlArlia~ts-k~~--SyrfvelSAt~a~t~dvR~ife~aq~~~--------------~l~kr 222 (554)
T KOG2028|consen 160 NRIPSMILWGPPGTGKTTLARLIASTS-KKH--SYRFVELSATNAKTNDVRDIFEQAQNEK--------------SLTKR 222 (554)
T ss_pred CCCCceEEecCCCCchHHHHHHHHhhc-CCC--ceEEEEEeccccchHHHHHHHHHHHHHH--------------hhhcc
Confidence 445667799999999999999988763 222 1557776655443344444444432110 00011
Q ss_pred c----CcCHHHHHH--hhcccCCCCCCcEEEE--EcCchHHH---HhhCCCceEeccCCChHHHHHHHHHHH
Q 039990 184 K----NKSYELWQA--LKSPFMAGAPGSRIIV--TTRSMDVA---LKMGSGKNYELKHLSDDDCWSVFLNHA 244 (1217)
Q Consensus 184 ~----~~~~~~~~~--l~~~~~~~~~gs~ilv--TtR~~~v~---~~~~~~~~~~l~~l~~~~~~~lf~~~~ 244 (1217)
+ .|...-+.. -..++|.-.+|.-++| ||.++.+. .-.....++.++.|+.++-..++.+..
T Consensus 223 kTilFiDEiHRFNksQQD~fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~rai 294 (554)
T KOG2028|consen 223 KTILFIDEIHRFNKSQQDTFLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAI 294 (554)
T ss_pred eeEEEeHHhhhhhhhhhhcccceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHH
Confidence 1 122222221 1235666677887776 77776652 122344789999999999999988843
No 83
>PLN03150 hypothetical protein; Provisional
Probab=97.54 E-value=0.00016 Score=87.80 Aligned_cols=90 Identities=14% Similarity=0.191 Sum_probs=76.4
Q ss_pred CccEEeecCCCCCcccccccccccCcceEeeccCCCccccccccCCCCcccEEEEcCCCCCccccccCCCCCCcceEEec
Q 039990 933 TLKCIQIEDCSNFKVLTSECQLSVAVEELTIDSCSNIESIAERFHDDACLRSIRLSYCKNLKSLPKGLNNLSHLHRRSIQ 1012 (1217)
Q Consensus 933 ~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~l~ 1012 (1217)
.+..|++++|.....+|..+..+++|+.|++++|.....+|..+..+++|+.|+|++|.....+|..+.++++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 36778888887777888888899999999999987777888888889999999999987777889999999999999999
Q ss_pred CCCCCcccCC
Q 039990 1013 GCHNLVSLPE 1022 (1217)
Q Consensus 1013 ~c~~l~~l~~ 1022 (1217)
+|.....+|.
T Consensus 499 ~N~l~g~iP~ 508 (623)
T PLN03150 499 GNSLSGRVPA 508 (623)
T ss_pred CCcccccCCh
Confidence 9875556664
No 84
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.53 E-value=0.00092 Score=75.16 Aligned_cols=171 Identities=16% Similarity=0.202 Sum_probs=93.9
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEe--CCcccHHHHHHHH
Q 039990 79 PAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCV--SDDFDILRISKAI 156 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~--~~~~~~~~~~~~i 156 (1217)
.+++|+++.++.+..++... ..+.+.|+|.+|+||||+|+.+++......+.. .++.+ +....... ..+.
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~------~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~-~~i~~~~~~~~~~~~-~~~~ 88 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEK------NMPHLLFAGPPGTGKTTAALALARELYGEDWRE-NFLELNASDERGIDV-IRNK 88 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHHcCCcccc-ceEEeccccccchHH-HHHH
Confidence 46899999999999888643 234578999999999999999987643333321 22332 22222221 2222
Q ss_pred HHHhhcCC-CC--------CCChhHHHHHHHHHHHhcCcCHHHHHHhhcccCCCCCCcEEEEEcCch-HHHHhh-CCCce
Q 039990 157 LESITRSS-CG--------LTDLNSVQLKLKEAVFKKNKSYELWQALKSPFMAGAPGSRIIVTTRSM-DVALKM-GSGKN 225 (1217)
Q Consensus 157 ~~~l~~~~-~~--------~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~-~v~~~~-~~~~~ 225 (1217)
+.++.... .. .++.+.+ ..+..+.+...+......+++|+++... .+.... .....
T Consensus 89 i~~~~~~~~~~~~~~~vviiDe~~~l-------------~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~ 155 (319)
T PRK00440 89 IKEFARTAPVGGAPFKIIFLDEADNL-------------TSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAV 155 (319)
T ss_pred HHHHHhcCCCCCCCceEEEEeCcccC-------------CHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhhe
Confidence 22221111 00 0111111 1122333333333333456677766432 111111 12347
Q ss_pred EeccCCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhccCCchhH
Q 039990 226 YELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGLPLAA 274 (1217)
Q Consensus 226 ~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 274 (1217)
+++++++.++....+...+...+ . .-.++..+.+++.++|.+--+
T Consensus 156 ~~~~~l~~~ei~~~l~~~~~~~~-~---~i~~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 156 FRFSPLKKEAVAERLRYIAENEG-I---EITDDALEAIYYVSEGDMRKA 200 (319)
T ss_pred eeeCCCCHHHHHHHHHHHHHHcC-C---CCCHHHHHHHHHHcCCCHHHH
Confidence 89999999999888888764322 1 122457888999999876543
No 85
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.52 E-value=0.0016 Score=73.92 Aligned_cols=187 Identities=17% Similarity=0.118 Sum_probs=95.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhccccCCCC-CeEEEEeCCcccH--HHHHH-
Q 039990 79 PAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDFK-PKAWVCVSDDFDI--LRISK- 154 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~-~~~wv~~~~~~~~--~~~~~- 154 (1217)
.+++|++..++.+..++... ..+.+.++|.+|+||||+|+.+++......++ ..+.++++.-.+. ..+..
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 88 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSP------NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGKKYLVED 88 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcchhhhhcC
Confidence 46899999999998888643 23457899999999999999988763323322 2334443321100 00000
Q ss_pred -HHHHHhhcC-CCCCCChhHHHHHHHHHHH-----h--c---CcC-----HHHHHHhhcccCCCCCCcEEEEEcCchH-H
Q 039990 155 -AILESITRS-SCGLTDLNSVQLKLKEAVF-----K--K---NKS-----YELWQALKSPFMAGAPGSRIIVTTRSMD-V 216 (1217)
Q Consensus 155 -~i~~~l~~~-~~~~~~~~~~~~~l~~~l~-----~--~---~~~-----~~~~~~l~~~~~~~~~gs~ilvTtR~~~-v 216 (1217)
......+.. .......+.....+..... . + +++ .+..+.+...+......+++|+||.... +
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~ 168 (337)
T PRK12402 89 PRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKL 168 (337)
T ss_pred cchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhC
Confidence 000000000 0000001111111111100 0 1 111 1223334444433344567887775432 2
Q ss_pred HHhh-CCCceEeccCCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhccCCchhHH
Q 039990 217 ALKM-GSGKNYELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGLPLAAR 275 (1217)
Q Consensus 217 ~~~~-~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 275 (1217)
...+ .....+++.+++.++..+.+.+.+...+ .. -..+.++.+++.++|.+-.+.
T Consensus 169 ~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~-~~---~~~~al~~l~~~~~gdlr~l~ 224 (337)
T PRK12402 169 IPPIRSRCLPLFFRAPTDDELVDVLESIAEAEG-VD---YDDDGLELIAYYAGGDLRKAI 224 (337)
T ss_pred chhhcCCceEEEecCCCHHHHHHHHHHHHHHcC-CC---CCHHHHHHHHHHcCCCHHHHH
Confidence 1112 2235788999999999988888764322 11 225578888899888754443
No 86
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.47 E-value=0.00013 Score=52.79 Aligned_cols=41 Identities=32% Similarity=0.466 Sum_probs=33.2
Q ss_pred CcceEEEcCCCCcccccccccccccChhhhcccccCcEEecccccccccccc
Q 039990 482 KKLRVLSLEKDNIAEVPISIGCLKCLPEAITSLFNLEILILSYCWCLLKLPS 533 (1217)
Q Consensus 482 ~~Lr~L~L~~~~i~~lp~~i~~L~~lp~~i~~L~~L~~L~L~~~~~l~~lp~ 533 (1217)
++|++|++++|+|+.+| ..+++|++|++|++++| .+..+|.
T Consensus 1 ~~L~~L~l~~N~i~~l~----------~~l~~l~~L~~L~l~~N-~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLP----------PELSNLPNLETLNLSNN-PISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHG----------GHGTTCTTSSEEEETSS-CCSBEGG
T ss_pred CcceEEEccCCCCcccC----------chHhCCCCCCEEEecCC-CCCCCcC
Confidence 47999999999999775 46899999999999999 6777654
No 87
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.47 E-value=0.00018 Score=75.38 Aligned_cols=54 Identities=19% Similarity=0.174 Sum_probs=45.7
Q ss_pred EEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCc--ccHHHHHHHHHHHh
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDD--FDILRISKAILESI 160 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~--~~~~~~~~~i~~~l 160 (1217)
..++|+|.+|+|||||++++|+.....+|+.++|+.+... .++.++++.+...+
T Consensus 17 qr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~ 72 (249)
T cd01128 17 QRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEV 72 (249)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEE
Confidence 5889999999999999999999754448999999997776 78999999984443
No 88
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.45 E-value=0.0018 Score=74.98 Aligned_cols=180 Identities=18% Similarity=0.173 Sum_probs=98.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhcc-ccC-------------------CCCCe
Q 039990 79 PAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDK-LTD-------------------DFKPK 138 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~-~~~-------------------~F~~~ 138 (1217)
.++||.+.....|...+.... -...+.++|++|+||||+|+.+++.. ... .+..+
T Consensus 14 ~divGq~~i~~~L~~~i~~~~-----l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv 88 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNS-----ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDV 88 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCcc
Confidence 469999888888877776532 23567899999999999999988753 111 11123
Q ss_pred EEEEeCCcccHHHHHHHHHHHhhcCCC-C------CCChhHHHHHHHHHHHhcCcCHHHHHHhhcccCCCCCCcEEEE-E
Q 039990 139 AWVCVSDDFDILRISKAILESITRSSC-G------LTDLNSVQLKLKEAVFKKNKSYELWQALKSPFMAGAPGSRIIV-T 210 (1217)
Q Consensus 139 ~wv~~~~~~~~~~~~~~i~~~l~~~~~-~------~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~~gs~ilv-T 210 (1217)
..+.++....+.++ ++|.+....... . .++.+.+. .+..+.+...+........+|+ |
T Consensus 89 ~el~aa~~~gid~i-R~i~~~~~~~p~~~~~kVvIIDE~h~Lt-------------~~a~~~LLk~LE~p~~~vv~Ilat 154 (472)
T PRK14962 89 IELDAASNRGIDEI-RKIRDAVGYRPMEGKYKVYIIDEVHMLT-------------KEAFNALLKTLEEPPSHVVFVLAT 154 (472)
T ss_pred EEEeCcccCCHHHH-HHHHHHHhhChhcCCeEEEEEEChHHhH-------------HHHHHHHHHHHHhCCCcEEEEEEe
Confidence 44444333333322 233333321110 0 11111111 1223334444433333444444 4
Q ss_pred cCchHHHHhh-CCCceEeccCCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhcc-CCchhHHHHHHHh
Q 039990 211 TRSMDVALKM-GSGKNYELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCK-GLPLAARALGGLL 281 (1217)
Q Consensus 211 tR~~~v~~~~-~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~-g~PLai~~~~~~l 281 (1217)
|....+.... .....+++.+++.++....+.+.+...+ . .-.+++...|++.++ +++.|+..+-.+.
T Consensus 155 tn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~eg-i---~i~~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 155 TNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEG-I---EIDREALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred CChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcC-C---CCCHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 4333343322 2346889999999998888888764321 1 112456788888775 5567777665543
No 89
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.45 E-value=0.00013 Score=79.37 Aligned_cols=52 Identities=19% Similarity=0.190 Sum_probs=44.6
Q ss_pred EEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCcc--cHHHHHHHHHH
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDF--DILRISKAILE 158 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~~--~~~~~~~~i~~ 158 (1217)
+..+|+|++|+||||||+++|+.....+|+.++||.+.+.. ++.++++.|..
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg 223 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKG 223 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcC
Confidence 57889999999999999999998534489999999998887 78888888763
No 90
>PRK04195 replication factor C large subunit; Provisional
Probab=97.44 E-value=0.0096 Score=70.36 Aligned_cols=242 Identities=15% Similarity=0.140 Sum_probs=126.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCcccHHHHHHHHHH
Q 039990 79 PAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDFDILRISKAILE 158 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 158 (1217)
.+++|.++.++++.+|+..-..+ ...+.+.|+|++|+||||+|++++++ . .|+ .+-+.++...+.. ....++.
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g--~~~~~lLL~GppG~GKTtla~ala~e-l--~~~-~ielnasd~r~~~-~i~~~i~ 86 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKG--KPKKALLLYGPPGVGKTSLAHALAND-Y--GWE-VIELNASDQRTAD-VIERVAG 86 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcC--CCCCeEEEECCCCCCHHHHHHHHHHH-c--CCC-EEEEcccccccHH-HHHHHHH
Confidence 46999999999999998653211 22578999999999999999999986 2 222 2333444332222 2333332
Q ss_pred HhhcCCCC---------CCChhHHHHHHHHHHHhcCcCHHHHHHhhcccCCCCCCcEEEEEcCchH-HHH-hh-CCCceE
Q 039990 159 SITRSSCG---------LTDLNSVQLKLKEAVFKKNKSYELWQALKSPFMAGAPGSRIIVTTRSMD-VAL-KM-GSGKNY 226 (1217)
Q Consensus 159 ~l~~~~~~---------~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~-v~~-~~-~~~~~~ 226 (1217)
.......- .++.+.+. . ..+...+..+...+.. .+..||+|+.+.. ... .. .....+
T Consensus 87 ~~~~~~sl~~~~~kvIiIDEaD~L~--------~-~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k~Lrsr~~~I 155 (482)
T PRK04195 87 EAATSGSLFGARRKLILLDEVDGIH--------G-NEDRGGARAILELIKK--AKQPIILTANDPYDPSLRELRNACLMI 155 (482)
T ss_pred HhhccCcccCCCCeEEEEecCcccc--------c-ccchhHHHHHHHHHHc--CCCCEEEeccCccccchhhHhccceEE
Confidence 22211000 00111100 0 0111223344333332 2334666664321 111 11 234678
Q ss_pred eccCCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhccCCchhHHHHHHHhhcC-CC--hhHHHHHHhhccCCCCC
Q 039990 227 ELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGLPLAARALGGLLRSK-QR--VDEWRAILNSKIWDLED 303 (1217)
Q Consensus 227 ~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~-~~--~~~w~~~~~~~~~~~~~ 303 (1217)
++.+++.++....+.+.+...+ .. -..++...|++.++|-.-.+......+... .. .+....+.. ...
T Consensus 156 ~f~~~~~~~i~~~L~~i~~~eg-i~---i~~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~~-----~d~ 226 (482)
T PRK04195 156 EFKRLSTRSIVPVLKRICRKEG-IE---CDDEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLGR-----RDR 226 (482)
T ss_pred EecCCCHHHHHHHHHHHHHHcC-CC---CCHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhhc-----CCC
Confidence 9999999999888887764322 11 124678899999988665444333333322 11 223332321 111
Q ss_pred CCCchHHHHHhhc-CCChhHHHHHHHhhcCCCCcccChHHHHHHHHHhCCccc
Q 039990 304 EIEIPSVLKLSYH-HLPSHLKRCFAYCAILPKDYEFQEEELVLLWIAEGFIQQ 355 (1217)
Q Consensus 304 ~~~i~~~l~~sy~-~L~~~~k~~f~~~~~fp~~~~i~~~~li~~w~~~g~i~~ 355 (1217)
..+++.++..-+. .-.......+.. ..++. +.+-.|+.+.+...
T Consensus 227 ~~~if~~l~~i~~~k~~~~a~~~~~~-------~~~~~-~~i~~~l~en~~~~ 271 (482)
T PRK04195 227 EESIFDALDAVFKARNADQALEASYD-------VDEDP-DDLIEWIDENIPKE 271 (482)
T ss_pred CCCHHHHHHHHHCCCCHHHHHHHHHc-------ccCCH-HHHHHHHHhccccc
Confidence 2257777776665 333333333222 12333 45678999998764
No 91
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.44 E-value=0.0029 Score=74.07 Aligned_cols=177 Identities=16% Similarity=0.162 Sum_probs=98.9
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhcc-ccCCC-------------------CCe
Q 039990 79 PAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDK-LTDDF-------------------KPK 138 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~-~~~~F-------------------~~~ 138 (1217)
.+++|++..++.+.+.+..+. ..+.+.++|+.|+||||+|+.+++.. ..... ...
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~r-----l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~Di 90 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNK-----LTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDI 90 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCce
Confidence 478999999999999886542 23678899999999999999988763 21111 112
Q ss_pred EEEEeCCcccHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhc---Cc-----CHHHHHHhhcccCCCCCCcEEEEE
Q 039990 139 AWVCVSDDFDILRISKAILESITRSSCGLTDLNSVQLKLKEAVFKK---NK-----SYELWQALKSPFMAGAPGSRIIVT 210 (1217)
Q Consensus 139 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~---~~-----~~~~~~~l~~~~~~~~~gs~ilvT 210 (1217)
+++..+....+.++ +++.+.+....... ..+ ++ ....++.+...+......+.+|++
T Consensus 91 ieIdaas~igVd~I-ReIi~~~~~~P~~~--------------~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~ 155 (605)
T PRK05896 91 VELDAASNNGVDEI-RNIIDNINYLPTTF--------------KYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFA 155 (605)
T ss_pred EEeccccccCHHHH-HHHHHHHHhchhhC--------------CcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEE
Confidence 33332222222221 22222222111000 001 11 123455555555443345555544
Q ss_pred c-CchHHHHh-hCCCceEeccCCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhccCCc-hhHHHHHH
Q 039990 211 T-RSMDVALK-MGSGKNYELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGLP-LAARALGG 279 (1217)
Q Consensus 211 t-R~~~v~~~-~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-Lai~~~~~ 279 (1217)
| ....+... ......+++.+++.++....+.+.+...+. .-..+.+..+++.++|-+ .|+..+-.
T Consensus 156 Tt~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi----~Is~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 156 TTEFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKI----KIEDNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred CCChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 4 44334322 223468899999999999888886633211 112456788999999855 45444443
No 92
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.43 E-value=0.0027 Score=74.12 Aligned_cols=174 Identities=12% Similarity=0.137 Sum_probs=98.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhcc-ccC------------------------
Q 039990 79 PAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDK-LTD------------------------ 133 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~-~~~------------------------ 133 (1217)
.++||.+..++.|.+.+.... -...+.++|..|+||||+|+.+.+.. ...
T Consensus 16 ddVIGQe~vv~~L~~al~~gR-----LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG 90 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQR-----LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAG 90 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcC
Confidence 479999999999999987653 33577899999999999999988764 210
Q ss_pred CCCCeEEEEeCCcccHHHHHHHHHHHhhcCCC-C------CCChhHHHHHHHHHHHhcCcCHHHHHHhhcccCCCCCCcE
Q 039990 134 DFKPKAWVCVSDDFDILRISKAILESITRSSC-G------LTDLNSVQLKLKEAVFKKNKSYELWQALKSPFMAGAPGSR 206 (1217)
Q Consensus 134 ~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-~------~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~~gs~ 206 (1217)
.|..++++.......+.++ +++++.+..... . .++.+. -+...++.+...+..-..+.+
T Consensus 91 ~hpDviEIdAas~~gVDdI-ReLie~~~~~P~~gr~KViIIDEah~-------------Ls~~AaNALLKTLEEPP~~v~ 156 (700)
T PRK12323 91 RFVDYIEMDAASNRGVDEM-AQLLDKAVYAPTAGRFKVYMIDEVHM-------------LTNHAFNAMLKTLEEPPEHVK 156 (700)
T ss_pred CCCcceEecccccCCHHHH-HHHHHHHHhchhcCCceEEEEEChHh-------------cCHHHHHHHHHhhccCCCCce
Confidence 1122333333322222221 122222211100 0 001111 122345555555544334555
Q ss_pred E-EEEcCchHHHHhh-CCCceEeccCCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhccCCchhHH
Q 039990 207 I-IVTTRSMDVALKM-GSGKNYELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGLPLAAR 275 (1217)
Q Consensus 207 i-lvTtR~~~v~~~~-~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 275 (1217)
+ ++||....+.... .....++++.++.++..+.+.+.+...+ . ....+..+.|++.++|.|....
T Consensus 157 FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Eg-i---~~d~eAL~~IA~~A~Gs~RdAL 223 (700)
T PRK12323 157 FILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEG-I---AHEVNALRLLAQAAQGSMRDAL 223 (700)
T ss_pred EEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcC-C---CCCHHHHHHHHHHcCCCHHHHH
Confidence 4 4555544443222 2236889999999999998887653221 1 1123456788999999885443
No 93
>PRK05642 DNA replication initiation factor; Validated
Probab=97.43 E-value=0.0042 Score=65.33 Aligned_cols=153 Identities=16% Similarity=0.208 Sum_probs=82.9
Q ss_pred EEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCcccHHHHHHHHHHHhhcCCC-CCCChhHHHHHHHHHHHhcC
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDFDILRISKAILESITRSSC-GLTDLNSVQLKLKEAVFKKN 185 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-~~~~~~~~~~~l~~~l~~~~ 185 (1217)
..+.|+|..|+|||.||+++++.. ...-..++|++..+-.. ....+.+.+..... -.+|.+..
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~-~~~~~~v~y~~~~~~~~---~~~~~~~~~~~~d~LiiDDi~~~------------ 109 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRF-EQRGEPAVYLPLAELLD---RGPELLDNLEQYELVCLDDLDVI------------ 109 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH-HhCCCcEEEeeHHHHHh---hhHHHHHhhhhCCEEEEechhhh------------
Confidence 578899999999999999988753 22224567776532111 11112222211000 01111100
Q ss_pred cCHHHHHH-hhcccCC-CCCCcEEEEEcCchHH---------HHhhCCCceEeccCCChHHHHHHHHHHHhCCCCCCCCC
Q 039990 186 KSYELWQA-LKSPFMA-GAPGSRIIVTTRSMDV---------ALKMGSGKNYELKHLSDDDCWSVFLNHAFEGIDTGTQG 254 (1217)
Q Consensus 186 ~~~~~~~~-l~~~~~~-~~~gs~ilvTtR~~~v---------~~~~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~ 254 (1217)
.....|+. +...+.. ...|..||+|++.... ..++....++++++++.++-.+++.+++.... ..
T Consensus 110 ~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~-~~--- 185 (234)
T PRK05642 110 AGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRG-LH--- 185 (234)
T ss_pred cCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcC-CC---
Confidence 01122322 2222211 1246679998875332 22333446889999999999999997764321 11
Q ss_pred chhhHHHHHHHhccCCchhHHHHHH
Q 039990 255 NFESTRQRVVAKCKGLPLAARALGG 279 (1217)
Q Consensus 255 ~~~~~~~~i~~~~~g~PLai~~~~~ 279 (1217)
-.+++.+.|++.+.|-.-++..+-.
T Consensus 186 l~~ev~~~L~~~~~~d~r~l~~~l~ 210 (234)
T PRK05642 186 LTDEVGHFILTRGTRSMSALFDLLE 210 (234)
T ss_pred CCHHHHHHHHHhcCCCHHHHHHHHH
Confidence 1246778888888877655544443
No 94
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.41 E-value=0.0029 Score=73.59 Aligned_cols=171 Identities=16% Similarity=0.140 Sum_probs=98.1
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhcc-ccCCC----------------------
Q 039990 79 PAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDK-LTDDF---------------------- 135 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~-~~~~F---------------------- 135 (1217)
.++||-+..+..|...+..+. -...+.++|+.|+||||+|+.+++.. .....
T Consensus 21 ~dliGq~~vv~~L~~ai~~~r-----i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~ 95 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDR-----LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHN 95 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCC
Confidence 468999999988888776542 23578899999999999999998764 22111
Q ss_pred -CCeEEEEeCCcccHHHHHHHHHHHhhcCCCC-------CCChhHHHHHHHHHHHhcCcCHHHHHHhhcccCCCCCCcEE
Q 039990 136 -KPKAWVCVSDDFDILRISKAILESITRSSCG-------LTDLNSVQLKLKEAVFKKNKSYELWQALKSPFMAGAPGSRI 207 (1217)
Q Consensus 136 -~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~~gs~i 207 (1217)
..++.+.+.....+.++ +++++........ .++.+ .-....|+.+...+......+.+
T Consensus 96 h~Dv~eidaas~~~vd~I-r~iie~a~~~P~~~~~KVvIIDEa~-------------~Ls~~a~naLLk~LEepp~~~vf 161 (507)
T PRK06645 96 HPDIIEIDAASKTSVDDI-RRIIESAEYKPLQGKHKIFIIDEVH-------------MLSKGAFNALLKTLEEPPPHIIF 161 (507)
T ss_pred CCcEEEeeccCCCCHHHH-HHHHHHHHhccccCCcEEEEEEChh-------------hcCHHHHHHHHHHHhhcCCCEEE
Confidence 11222222222222222 1222222111000 00000 01234566666666554456665
Q ss_pred EE-EcCchHHHHhh-CCCceEeccCCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhccCCch
Q 039990 208 IV-TTRSMDVALKM-GSGKNYELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGLPL 272 (1217)
Q Consensus 208 lv-TtR~~~v~~~~-~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL 272 (1217)
|+ ||+.+.+.... .....+++++++.++..+.+.+.+-..+. .-..+..+.|++.++|.+-
T Consensus 162 I~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi----~ie~eAL~~Ia~~s~GslR 224 (507)
T PRK06645 162 IFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENL----KTDIEALRIIAYKSEGSAR 224 (507)
T ss_pred EEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHH
Confidence 54 55555554333 23357899999999999999888743221 1124567789999988663
No 95
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.40 E-value=0.003 Score=72.20 Aligned_cols=176 Identities=13% Similarity=0.117 Sum_probs=99.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhccc-cC--CC-----------------CCe
Q 039990 79 PAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKL-TD--DF-----------------KPK 138 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~-~~--~F-----------------~~~ 138 (1217)
.+++|.++.++.+.+.+... .-...+.++|.+|+||||+|+.+.+... .. .+ ...
T Consensus 14 ~~iig~~~~~~~l~~~~~~~-----~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~ 88 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNG-----RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV 88 (355)
T ss_pred hhccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE
Confidence 46899999999999988654 2235788999999999999998876531 11 11 123
Q ss_pred EEEEeCCcccHHHHHHHHHHHhhcCCC-C------CCChhHHHHHHHHHHHhcCcCHHHHHHhhcccCCCCCCcEEEEEc
Q 039990 139 AWVCVSDDFDILRISKAILESITRSSC-G------LTDLNSVQLKLKEAVFKKNKSYELWQALKSPFMAGAPGSRIIVTT 211 (1217)
Q Consensus 139 ~wv~~~~~~~~~~~~~~i~~~l~~~~~-~------~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~~gs~ilvTt 211 (1217)
+++......... ..+++.+.+..... . .++.+.+ ....++.+...+......+.+|++|
T Consensus 89 ~~~~~~~~~~~~-~~~~l~~~~~~~p~~~~~~vviidea~~l-------------~~~~~~~Ll~~le~~~~~~~lIl~~ 154 (355)
T TIGR02397 89 IEIDAASNNGVD-DIREILDNVKYAPSSGKYKVYIIDEVHML-------------SKSAFNALLKTLEEPPEHVVFILAT 154 (355)
T ss_pred EEeeccccCCHH-HHHHHHHHHhcCcccCCceEEEEeChhhc-------------CHHHHHHHHHHHhCCccceeEEEEe
Confidence 444433222221 12333333322111 0 0111111 1123344444444334466666666
Q ss_pred CchH-HHHhh-CCCceEeccCCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhccCCchhHHHH
Q 039990 212 RSMD-VALKM-GSGKNYELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGLPLAARAL 277 (1217)
Q Consensus 212 R~~~-v~~~~-~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 277 (1217)
.+.. +.... .....++..+++.++..+.+...+-..+ . .-.++.+..+++.++|.|-.+...
T Consensus 155 ~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g-~---~i~~~a~~~l~~~~~g~~~~a~~~ 218 (355)
T TIGR02397 155 TEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEG-I---KIEDEALELIARAADGSLRDALSL 218 (355)
T ss_pred CCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcC-C---CCCHHHHHHHHHHcCCChHHHHHH
Confidence 5443 22222 2235788999999998888888763322 1 112467888999999988655443
No 96
>PLN03025 replication factor C subunit; Provisional
Probab=97.40 E-value=0.0021 Score=71.49 Aligned_cols=169 Identities=16% Similarity=0.190 Sum_probs=91.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhccccCCCC-CeEEEEeCCcccHHHHHHHHH
Q 039990 79 PAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDFK-PKAWVCVSDDFDILRISKAIL 157 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~-~~~wv~~~~~~~~~~~~~~i~ 157 (1217)
.+++|.++.++.|..++... ..+.+.++|++|+||||+|..+++......|. .++-+..+...... ..++++
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~~~-~vr~~i 85 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDG------NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRGID-VVRNKI 85 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccccccHH-HHHHHH
Confidence 46889988888887776543 22346789999999999999998763333343 22223333332222 233333
Q ss_pred HHhhcCCC----C------CCChhHHHHHHHHHHHhcCcCHHHHHHhhcccCCCCCCcEEEEEcCch-HHHHhh-CCCce
Q 039990 158 ESITRSSC----G------LTDLNSVQLKLKEAVFKKNKSYELWQALKSPFMAGAPGSRIIVTTRSM-DVALKM-GSGKN 225 (1217)
Q Consensus 158 ~~l~~~~~----~------~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~-~v~~~~-~~~~~ 225 (1217)
+.+..... . .++.+.+. ....+.+...+......+++++++... .+.... .....
T Consensus 86 ~~~~~~~~~~~~~~~kviiiDE~d~lt-------------~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~ 152 (319)
T PLN03025 86 KMFAQKKVTLPPGRHKIVILDEADSMT-------------SGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAI 152 (319)
T ss_pred HHHHhccccCCCCCeEEEEEechhhcC-------------HHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhc
Confidence 32211100 0 01111111 111222333332223456677766442 221111 12357
Q ss_pred EeccCCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhccCCc
Q 039990 226 YELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGLP 271 (1217)
Q Consensus 226 ~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 271 (1217)
+++++++.++..+.+.+.+-..+ ... ..+..+.|++.++|-.
T Consensus 153 i~f~~l~~~~l~~~L~~i~~~eg-i~i---~~~~l~~i~~~~~gDl 194 (319)
T PLN03025 153 VRFSRLSDQEILGRLMKVVEAEK-VPY---VPEGLEAIIFTADGDM 194 (319)
T ss_pred ccCCCCCHHHHHHHHHHHHHHcC-CCC---CHHHHHHHHHHcCCCH
Confidence 89999999999988888764322 111 2456788888888765
No 97
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.38 E-value=0.0013 Score=78.18 Aligned_cols=173 Identities=12% Similarity=0.104 Sum_probs=96.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhcc-ccC-------------------CCCCe
Q 039990 79 PAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDK-LTD-------------------DFKPK 138 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~-~~~-------------------~F~~~ 138 (1217)
.++||.+..+..|...+..+. -...+.++|..|+||||+|+.+++.. ... .|...
T Consensus 16 ~divGQe~vv~~L~~~l~~~r-----l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ 90 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGR-----LHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDL 90 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCc
Confidence 579999999999988887642 23567899999999999999988764 211 12122
Q ss_pred EEEEeCCcccHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhc-----Cc-----CHHHHHHhhcccCCCCCCcEEE
Q 039990 139 AWVCVSDDFDILRISKAILESITRSSCGLTDLNSVQLKLKEAVFKK-----NK-----SYELWQALKSPFMAGAPGSRII 208 (1217)
Q Consensus 139 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~-----~~-----~~~~~~~l~~~~~~~~~gs~il 208 (1217)
+.+.......+.+ .+++.+.+.... ..++ +| +...++.+...+.......++|
T Consensus 91 ieidaas~~~Vdd-iR~li~~~~~~p----------------~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FI 153 (647)
T PRK07994 91 IEIDAASRTKVED-TRELLDNVQYAP----------------ARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFL 153 (647)
T ss_pred eeecccccCCHHH-HHHHHHHHHhhh----------------hcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEE
Confidence 3333222112211 122222221110 0011 11 2234555544444333455555
Q ss_pred EEcCc-hHHHHh-hCCCceEeccCCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhccCCch-hHHHH
Q 039990 209 VTTRS-MDVALK-MGSGKNYELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGLPL-AARAL 277 (1217)
Q Consensus 209 vTtR~-~~v~~~-~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~ 277 (1217)
.+|.+ ..+... ......+.+++++.++..+.+.+.+-..+ .....+..+.|++.++|.+- |+..+
T Consensus 154 L~Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~----i~~e~~aL~~Ia~~s~Gs~R~Al~ll 221 (647)
T PRK07994 154 LATTDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQ----IPFEPRALQLLARAADGSMRDALSLT 221 (647)
T ss_pred EecCCccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 54444 443322 22246899999999999988887652211 11224556789999999764 44443
No 98
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.38 E-value=0.0028 Score=71.51 Aligned_cols=176 Identities=15% Similarity=0.131 Sum_probs=96.9
Q ss_pred CccccchhhHHHHHHHHhcCCCC----CCCCcEEEEEEccCCchHHHHHHHHHhcc-ccC------------------CC
Q 039990 79 PAVYGRNEDKARILDMVLKNDPS----DAANFRVIPLVGMGGIGKTTLAQEVYNDK-LTD------------------DF 135 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~-~~~------------------~F 135 (1217)
.+++|-+..++.|.+.+...... +..-...+.++|+.|+|||++|..+++.. ... .+
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 36899999999999998764310 00134678899999999999999987653 111 12
Q ss_pred CCeEEEEeC-CcccHHHHHHHHHHHhhcCCCC-------CCChhHHHHHHHHHHHhcCcCHHHHHHhhcccCCCCCCcEE
Q 039990 136 KPKAWVCVS-DDFDILRISKAILESITRSSCG-------LTDLNSVQLKLKEAVFKKNKSYELWQALKSPFMAGAPGSRI 207 (1217)
Q Consensus 136 ~~~~wv~~~-~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~~gs~i 207 (1217)
+.+.++... ....+.+ .+++.+.+...... .++.+.+ +....+.+...+.....+..+
T Consensus 85 pD~~~i~~~~~~i~i~~-iR~l~~~~~~~p~~~~~kViiIDead~m-------------~~~aanaLLk~LEep~~~~~f 150 (394)
T PRK07940 85 PDVRVVAPEGLSIGVDE-VRELVTIAARRPSTGRWRIVVIEDADRL-------------TERAANALLKAVEEPPPRTVW 150 (394)
T ss_pred CCEEEeccccccCCHHH-HHHHHHHHHhCcccCCcEEEEEechhhc-------------CHHHHHHHHHHhhcCCCCCeE
Confidence 223333221 1122222 22333333221110 0111111 112223333333333345555
Q ss_pred EEEcCc-hHHHHhh-CCCceEeccCCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhccCCchhHHHH
Q 039990 208 IVTTRS-MDVALKM-GSGKNYELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGLPLAARAL 277 (1217)
Q Consensus 208 lvTtR~-~~v~~~~-~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 277 (1217)
|++|.+ ..+.... .....+.+++++.++..+.+.+.. .. ..+.+..+++.++|.|.....+
T Consensus 151 IL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~----~~-----~~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 151 LLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRD----GV-----DPETARRAARASQGHIGRARRL 213 (394)
T ss_pred EEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhc----CC-----CHHHHHHHHHHcCCCHHHHHHH
Confidence 555554 3333222 234689999999999988887542 11 1345788999999999755443
No 99
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.38 E-value=0.00011 Score=88.53 Aligned_cols=136 Identities=21% Similarity=0.201 Sum_probs=86.2
Q ss_pred CcceEEEcCCCCc--ccccccccccccChhhhc-ccccCcEEeccccccc--ccccccccccccccEEeecCCccccccC
Q 039990 482 KKLRVLSLEKDNI--AEVPISIGCLKCLPEAIT-SLFNLEILILSYCWCL--LKLPSSIGNLVNLHHLDIEGADRLCELP 556 (1217)
Q Consensus 482 ~~Lr~L~L~~~~i--~~lp~~i~~L~~lp~~i~-~L~~L~~L~L~~~~~l--~~lp~~i~~L~~L~~L~l~~~~~l~~lp 556 (1217)
.+|+.||++|... ..-| ..++ .|+.|+.|.+++- .+ .++-.-..+++||+.||++++ .++.+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~----------~kig~~LPsL~sL~i~~~-~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl- 188 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWP----------KKIGTMLPSLRSLVISGR-QFDNDDFSQLCASFPNLRSLDISGT-NISNL- 188 (699)
T ss_pred HhhhhcCccccchhhccHH----------HHHhhhCcccceEEecCc-eecchhHHHHhhccCccceeecCCC-CccCc-
Confidence 4788888887542 1122 2233 3678888888773 22 122223467888888888888 67777
Q ss_pred CCCccCcccccccccccccChhhhHHHHhcCCCCCCeEEEEecCCCCchhhHHHHhcccCCCCCccEEEEEeeCC
Q 039990 557 LGMKELKCLRTLTDFINVIDSQEANEAMLRGKKDLEVLKLVWSGGPVDELREKNILDMLKPHCNIKRLEIISYGS 631 (1217)
Q Consensus 557 ~~i~~L~~L~~L~~~~n~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~ 631 (1217)
.|+++|++||+|.+..-.... ......+-++++|++|+++..........-...++.-..+|+|+.|+.+++..
T Consensus 189 ~GIS~LknLq~L~mrnLe~e~-~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 189 SGISRLKNLQVLSMRNLEFES-YQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred HHHhccccHHHHhccCCCCCc-hhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcch
Confidence 688888888888766422222 12223466789999999987665444444445556656677888888876543
No 100
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.37 E-value=0.0021 Score=72.99 Aligned_cols=182 Identities=13% Similarity=0.048 Sum_probs=93.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCcccHHHHHHHHHH
Q 039990 79 PAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDFDILRISKAILE 158 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 158 (1217)
.++||.+..+..|..++.... -...+.++|+.|+||||+|+.+++.......... ..+.....-..+...+..
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~r-----i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~--~pCg~C~sC~~i~~g~~~ 90 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGK-----IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGN--EPCNECTSCLEITKGISS 90 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCc--cccCCCcHHHHHHccCCc
Confidence 469999999999988887642 2246789999999999999999876421111100 000000001111110000
Q ss_pred Hhhc-CCCCCCChhHHH---HHHHHH-HHhc-----Cc-----CHHHHHHhhcccCCCCCCcEEE-EEcCchHHHHhh-C
Q 039990 159 SITR-SSCGLTDLNSVQ---LKLKEA-VFKK-----NK-----SYELWQALKSPFMAGAPGSRII-VTTRSMDVALKM-G 221 (1217)
Q Consensus 159 ~l~~-~~~~~~~~~~~~---~~l~~~-l~~~-----~~-----~~~~~~~l~~~~~~~~~gs~il-vTtR~~~v~~~~-~ 221 (1217)
.+.. ........++.. ..+... ..++ +| ..+.++.+...+........+| .||....+.... .
T Consensus 91 dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~S 170 (484)
T PRK14956 91 DVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILS 170 (484)
T ss_pred cceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHh
Confidence 0000 000001111111 111110 0111 11 2345666665554433445444 455444443222 2
Q ss_pred CCceEeccCCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhccCCc
Q 039990 222 SGKNYELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGLP 271 (1217)
Q Consensus 222 ~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 271 (1217)
....|.+.+++.++..+.+.+.+...+ . .-..+....|++.++|.+
T Consensus 171 RCq~~~f~~ls~~~i~~~L~~i~~~Eg-i---~~e~eAL~~Ia~~S~Gd~ 216 (484)
T PRK14956 171 RCQDFIFKKVPLSVLQDYSEKLCKIEN-V---QYDQEGLFWIAKKGDGSV 216 (484)
T ss_pred hhheeeecCCCHHHHHHHHHHHHHHcC-C---CCCHHHHHHHHHHcCChH
Confidence 235799999999998888887763321 1 112457788999999887
No 101
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.36 E-value=4.4e-06 Score=94.53 Aligned_cols=123 Identities=23% Similarity=0.279 Sum_probs=83.3
Q ss_pred CcceEeeccCCCccccCCC-CCCCCCCeEEecCCCCCccccccccccCCcccceeeccCCCccccccccccCCCCCCcce
Q 039990 1051 SLQLLTLIECPGIVFFPEE-GLSTNLTDLEISGDNIYKPLVKWGFDKFSSLRKHCINRCSDAVSFPEVEKGVILPTSLTL 1129 (1217)
Q Consensus 1051 ~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~ 1129 (1217)
.|...+.+. +.+..+... .+++.|+.|+++.|.....- .+..++.|++|+|++| .+..+|.. +... -.|+.
T Consensus 165 ~L~~a~fsy-N~L~~mD~SLqll~ale~LnLshNk~~~v~---~Lr~l~~LkhLDlsyN-~L~~vp~l--~~~g-c~L~~ 236 (1096)
T KOG1859|consen 165 KLATASFSY-NRLVLMDESLQLLPALESLNLSHNKFTKVD---NLRRLPKLKHLDLSYN-CLRHVPQL--SMVG-CKLQL 236 (1096)
T ss_pred hHhhhhcch-hhHHhHHHHHHHHHHhhhhccchhhhhhhH---HHHhcccccccccccc-hhcccccc--chhh-hhhee
Confidence 344444433 333333333 45778888888888776544 3567888999999984 45555541 1122 34899
Q ss_pred EeecCCCCCcccCccccCCcccccccccccccCcccCCCC---CCCCccceEeccCCcc
Q 039990 1130 IRISDFPKLERLSSKGFHYLLSLEQLKVSSCPNFTSFPEA---GFPSSLLFLDIQGCPL 1185 (1217)
Q Consensus 1130 L~l~~c~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~lp~~---~~~~sL~~L~l~~c~~ 1185 (1217)
|.+++ |.++++- ++.+|.+|+.|+++.| .|....+- ..+.+|+.|.+.|+|.
T Consensus 237 L~lrn-N~l~tL~--gie~LksL~~LDlsyN-ll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 237 LNLRN-NALTTLR--GIENLKSLYGLDLSYN-LLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred eeecc-cHHHhhh--hHHhhhhhhccchhHh-hhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 99998 8888885 8899999999999988 66555432 2357888889999884
No 102
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.36 E-value=8.1e-05 Score=77.76 Aligned_cols=243 Identities=16% Similarity=0.117 Sum_probs=112.1
Q ss_pred hhhhhcCCCCcceEEEcCCCC----cccccccccccccChhhhcccccCcEEeccccccccccc----ccccccccccEE
Q 039990 473 VLSDLLPKCKKLRVLSLEKDN----IAEVPISIGCLKCLPEAITSLFNLEILILSYCWCLLKLP----SSIGNLVNLHHL 544 (1217)
Q Consensus 473 ~~~~~~~~l~~Lr~L~L~~~~----i~~lp~~i~~L~~lp~~i~~L~~L~~L~L~~~~~l~~lp----~~i~~L~~L~~L 544 (1217)
.....+.+.+.||..++++-- ..++|+.+. .|.+++....+|++||||.|..-..-+ .-|.....|++|
T Consensus 49 ~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~---~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL 125 (382)
T KOG1909|consen 49 AIAKVLASKKELREVNLSDMFTGRLKDEIPEALK---MLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEEL 125 (382)
T ss_pred HHHHHHhhcccceeeehHhhhcCCcHHHHHHHHH---HHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHH
Confidence 344455566666666666422 233443222 334555666677777777763222222 224556777777
Q ss_pred eecCCccccccCCC-CccCcccccccccccccChhhhHHHHhcCCCCCCeEEEEecCCCCchhhHHHHhcccCCCCCccE
Q 039990 545 DIEGADRLCELPLG-MKELKCLRTLTDFINVIDSQEANEAMLRGKKDLEVLKLVWSGGPVDELREKNILDMLKPHCNIKR 623 (1217)
Q Consensus 545 ~l~~~~~l~~lp~~-i~~L~~L~~L~~~~n~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~L~~ 623 (1217)
+|.+| .+...-.+ +++ -|++|. ..........|+++....|..... ....+-..++.++.|+.
T Consensus 126 ~L~N~-Glg~~ag~~l~~--al~~l~-----------~~kk~~~~~~Lrv~i~~rNrlen~--ga~~~A~~~~~~~~lee 189 (382)
T KOG1909|consen 126 YLNNC-GLGPEAGGRLGR--ALFELA-----------VNKKAASKPKLRVFICGRNRLENG--GATALAEAFQSHPTLEE 189 (382)
T ss_pred hhhcC-CCChhHHHHHHH--HHHHHH-----------HHhccCCCcceEEEEeeccccccc--cHHHHHHHHHhccccce
Confidence 77777 33321110 110 011111 011233345555555543322111 11222333444556666
Q ss_pred EEEEeeCCCCCCCC---cCCCCcCcccEEEEecCCCCCC----CC-CCCCcCCCCeeEEcCCCCceEeCccccCCCCccc
Q 039990 624 LEIISYGSTRFPSW---VGDPSFSNVAVLKLENCDRCTS----LP-SLGQLCSLKDLTIVGMSALKSVGSEIYGEGCSKP 695 (1217)
Q Consensus 624 L~l~~~~~~~~p~~---~~~~~l~~L~~L~L~~~~~~~~----l~-~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 695 (1217)
+.++.+.+..---. .+...+++|+.|+|.+|..-.. +. .+..+++|+.|+++.|.- +.-+...+...-...
T Consensus 190 vr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll-~~~Ga~a~~~al~~~ 268 (382)
T KOG1909|consen 190 VRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLL-ENEGAIAFVDALKES 268 (382)
T ss_pred EEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccc-ccccHHHHHHHHhcc
Confidence 66655543211000 0011356666666666542111 11 355566777777777642 221111111111123
Q ss_pred CcccceeeccccccccccccCCccccccccCccccEEeecCC
Q 039990 696 FRSLQTLYFEDLQEWEHWEPNRENDEHVQAFSHLRKLSIKRC 737 (1217)
Q Consensus 696 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c 737 (1217)
+|+|+.|.+.++..-.+-.. .....+...|.|+.|.+++|
T Consensus 269 ~p~L~vl~l~gNeIt~da~~--~la~~~~ek~dL~kLnLngN 308 (382)
T KOG1909|consen 269 APSLEVLELAGNEITRDAAL--ALAACMAEKPDLEKLNLNGN 308 (382)
T ss_pred CCCCceeccCcchhHHHHHH--HHHHHHhcchhhHHhcCCcc
Confidence 78888888887754222100 00111224788999999888
No 103
>PRK09087 hypothetical protein; Validated
Probab=97.35 E-value=0.0087 Score=62.33 Aligned_cols=142 Identities=15% Similarity=0.112 Sum_probs=79.5
Q ss_pred EEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCcccHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhcCc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDFDILRISKAILESITRSSCGLTDLNSVQLKLKEAVFKKNK 186 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 186 (1217)
+.+.|+|..|+|||+|++.+++. . ...+++.. .+..++...+....--.++.+... .
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~-~-----~~~~i~~~------~~~~~~~~~~~~~~l~iDDi~~~~-----------~ 101 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREK-S-----DALLIHPN------EIGSDAANAAAEGPVLIEDIDAGG-----------F 101 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHh-c-----CCEEecHH------HcchHHHHhhhcCeEEEECCCCCC-----------C
Confidence 57899999999999999988765 2 12244432 122222222211100001111000 0
Q ss_pred CHHHHHHhhcccCCCCCCcEEEEEcCc---------hHHHHhhCCCceEeccCCChHHHHHHHHHHHhCCCCCCCCCchh
Q 039990 187 SYELWQALKSPFMAGAPGSRIIVTTRS---------MDVALKMGSGKNYELKHLSDDDCWSVFLNHAFEGIDTGTQGNFE 257 (1217)
Q Consensus 187 ~~~~~~~l~~~~~~~~~gs~ilvTtR~---------~~v~~~~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~ 257 (1217)
+.+.+-.+...+. ..|..||+|++. ++...++....++++++++.++-.+++.+.+-.. +.. -.+
T Consensus 102 ~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~-~~~---l~~ 175 (226)
T PRK09087 102 DETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADR-QLY---VDP 175 (226)
T ss_pred CHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHc-CCC---CCH
Confidence 1111111111111 236679999874 3344455566799999999999999999987432 111 225
Q ss_pred hHHHHHHHhccCCchhHHHH
Q 039990 258 STRQRVVAKCKGLPLAARAL 277 (1217)
Q Consensus 258 ~~~~~i~~~~~g~PLai~~~ 277 (1217)
++...|++.+.|-.-++..+
T Consensus 176 ev~~~La~~~~r~~~~l~~~ 195 (226)
T PRK09087 176 HVVYYLVSRMERSLFAAQTI 195 (226)
T ss_pred HHHHHHHHHhhhhHHHHHHH
Confidence 67788888888777666543
No 104
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.34 E-value=0.0012 Score=64.53 Aligned_cols=59 Identities=25% Similarity=0.264 Sum_probs=43.2
Q ss_pred ccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCcc
Q 039990 82 YGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDF 147 (1217)
Q Consensus 82 vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~~ 147 (1217)
+|++..+..+...+.... .+.+.|+|.+|+|||++|+++++.. ...-..++++...+..
T Consensus 1 ~~~~~~~~~i~~~~~~~~------~~~v~i~G~~G~GKT~l~~~i~~~~-~~~~~~v~~~~~~~~~ 59 (151)
T cd00009 1 VGQEEAIEALREALELPP------PKNLLLYGPPGTGKTTLARAIANEL-FRPGAPFLYLNASDLL 59 (151)
T ss_pred CchHHHHHHHHHHHhCCC------CCeEEEECCCCCCHHHHHHHHHHHh-hcCCCCeEEEehhhhh
Confidence 478888999988886532 2578899999999999999999863 2222346677655544
No 105
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.33 E-value=0.0044 Score=64.34 Aligned_cols=176 Identities=16% Similarity=0.181 Sum_probs=90.1
Q ss_pred CCccccch-hhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhccccCCC-C-CeEEEEeCCcccHHHHHH
Q 039990 78 EPAVYGRN-EDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDF-K-PKAWVCVSDDFDILRISK 154 (1217)
Q Consensus 78 ~~~~vGr~-~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F-~-~~~wv~~~~~~~~~~~~~ 154 (1217)
+.-++|.. +......+.+..... .....+.|+|..|+|||.|.+++++.. .... . .+++++ ..++..
T Consensus 8 dnfv~g~~N~~a~~~~~~ia~~~~---~~~~~l~l~G~~G~GKTHLL~Ai~~~~-~~~~~~~~v~y~~------~~~f~~ 77 (219)
T PF00308_consen 8 DNFVVGESNELAYAAAKAIAENPG---ERYNPLFLYGPSGLGKTHLLQAIANEA-QKQHPGKRVVYLS------AEEFIR 77 (219)
T ss_dssp CCS--TTTTHHHHHHHHHHHHSTT---TSSSEEEEEESTTSSHHHHHHHHHHHH-HHHCTTS-EEEEE------HHHHHH
T ss_pred ccCCcCCcHHHHHHHHHHHHhcCC---CCCCceEEECCCCCCHHHHHHHHHHHH-Hhccccccceeec------HHHHHH
Confidence 33345753 334445555544422 233467899999999999999999873 3222 2 345554 334444
Q ss_pred HHHHHhhcCCCCCCChhHHHHHHHHHHHhc----------CcCHHHHHH-hhcccCC-CCCCcEEEEEcCch--------
Q 039990 155 AILESITRSSCGLTDLNSVQLKLKEAVFKK----------NKSYELWQA-LKSPFMA-GAPGSRIIVTTRSM-------- 214 (1217)
Q Consensus 155 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~----------~~~~~~~~~-l~~~~~~-~~~gs~ilvTtR~~-------- 214 (1217)
.+...+... ..++ +...+..- ......|+. +...+.. ...|.+||+|++..
T Consensus 78 ~~~~~~~~~-----~~~~----~~~~~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~ 148 (219)
T PF00308_consen 78 EFADALRDG-----EIEE----FKDRLRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLL 148 (219)
T ss_dssp HHHHHHHTT-----SHHH----HHHHHCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-
T ss_pred HHHHHHHcc-----cchh----hhhhhhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccC
Confidence 444444321 1111 11111111 112222322 2111111 12466899999653
Q ss_pred -HHHHhhCCCceEeccCCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhccCCchhHHH
Q 039990 215 -DVALKMGSGKNYELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGLPLAARA 276 (1217)
Q Consensus 215 -~v~~~~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~ 276 (1217)
+...++...-++++++++.++..+++.+.+....-. -.+++++-|++.+.+..-.+..
T Consensus 149 ~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~----l~~~v~~~l~~~~~~~~r~L~~ 207 (219)
T PF00308_consen 149 PDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIE----LPEEVIEYLARRFRRDVRELEG 207 (219)
T ss_dssp HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT------S-HHHHHHHHHHTTSSHHHHHH
T ss_pred hhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCC----CcHHHHHHHHHhhcCCHHHHHH
Confidence 234455566799999999999999999988543211 2245677777776655544443
No 106
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.33 E-value=0.0024 Score=73.52 Aligned_cols=171 Identities=16% Similarity=0.175 Sum_probs=101.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhcc-c-------------------cCCCCCe
Q 039990 79 PAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDK-L-------------------TDDFKPK 138 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~-~-------------------~~~F~~~ 138 (1217)
.++||.+...+.|...+..+. -...+.++|+.|+||||+|+.+++.. . ...+..+
T Consensus 13 ~dliGQe~vv~~L~~a~~~~r-----i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv 87 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNK-----IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDV 87 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCE
Confidence 579999998888888876542 23578899999999999999887632 1 1123345
Q ss_pred EEEEeCCcccHHHHHHHHHHHhhcCCCC-------CCChhHHHHHHHHHHHhcCcCHHHHHHhhcccCCCCCCcEEEEEc
Q 039990 139 AWVCVSDDFDILRISKAILESITRSSCG-------LTDLNSVQLKLKEAVFKKNKSYELWQALKSPFMAGAPGSRIIVTT 211 (1217)
Q Consensus 139 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~~gs~ilvTt 211 (1217)
+.++.+....+.+ .+++.+........ .++.+.+ ....++.+...+....+.+++|++|
T Consensus 88 ~eidaas~~~vdd-IR~Iie~~~~~P~~~~~KVvIIDEah~L-------------s~~A~NaLLK~LEePp~~v~fIlat 153 (491)
T PRK14964 88 IEIDAASNTSVDD-IKVILENSCYLPISSKFKVYIIDEVHML-------------SNSAFNALLKTLEEPAPHVKFILAT 153 (491)
T ss_pred EEEecccCCCHHH-HHHHHHHHHhccccCCceEEEEeChHhC-------------CHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 6666654444443 22343333221110 0111111 2234455555555444566666555
Q ss_pred -CchHHHHhh-CCCceEeccCCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhccCCch
Q 039990 212 -RSMDVALKM-GSGKNYELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGLPL 272 (1217)
Q Consensus 212 -R~~~v~~~~-~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL 272 (1217)
..+.+.... .....+++++++.++..+.+.+.+...+. .-..+..+.|++.++|-+-
T Consensus 154 te~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi----~i~~eAL~lIa~~s~GslR 212 (491)
T PRK14964 154 TEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENI----EHDEESLKLIAENSSGSMR 212 (491)
T ss_pred CChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHH
Confidence 444443322 33468899999999999998887643221 1224567789999988764
No 107
>PF13173 AAA_14: AAA domain
Probab=97.33 E-value=0.00022 Score=67.23 Aligned_cols=115 Identities=24% Similarity=0.253 Sum_probs=64.5
Q ss_pred EEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCcccHHHH----HHHHHHHhhcCCCCCCChhHHHHHHHHHHH
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDFDILRI----SKAILESITRSSCGLTDLNSVQLKLKEAVF 182 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~~~~~~~----~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 182 (1217)
+++.|.|+-|+||||++++++++.. .-..+++++..+....... .+.+.+... +....-=+++
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~--~~~~~~yi~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~iDE---------- 69 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL--PPENILYINFDDPRDRRLADPDLLEYFLELIK-PGKKYIFIDE---------- 69 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc--ccccceeeccCCHHHHHHhhhhhHHHHHHhhc-cCCcEEEEeh----------
Confidence 6899999999999999999887622 3345677776655432211 111111110 0000000011
Q ss_pred hcCcCHHHHHHhhcccCCCCCCcEEEEEcCchHHHHhh------CCCceEeccCCChHHH
Q 039990 183 KKNKSYELWQALKSPFMAGAPGSRIIVTTRSMDVALKM------GSGKNYELKHLSDDDC 236 (1217)
Q Consensus 183 ~~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~v~~~~------~~~~~~~l~~l~~~~~ 236 (1217)
+.....|......+.+..+..+|++|+........- +....+++.||+..|.
T Consensus 70 --iq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 70 --IQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred --hhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 222234555444444444678899999987665321 1224778999998774
No 108
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.32 E-value=0.002 Score=76.36 Aligned_cols=172 Identities=9% Similarity=0.131 Sum_probs=97.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhcc-ccC------------------------
Q 039990 79 PAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDK-LTD------------------------ 133 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~-~~~------------------------ 133 (1217)
.++||-+..+..|.+++.... -...+.++|..|+||||+|+.+++.. ...
T Consensus 16 ~dviGQe~vv~~L~~~l~~~r-----l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g 90 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQR-----LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSG 90 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcC
Confidence 468999888888888887642 33677899999999999999986653 211
Q ss_pred CCCCeEEEEeCCcccHHHHHHHHHHHhhcCCCC-------CCChhHHHHHHHHHHHhcCcCHHHHHHhhcccCCCCCCcE
Q 039990 134 DFKPKAWVCVSDDFDILRISKAILESITRSSCG-------LTDLNSVQLKLKEAVFKKNKSYELWQALKSPFMAGAPGSR 206 (1217)
Q Consensus 134 ~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~~gs~ 206 (1217)
.+..++++.......+.++ +++++.+...... .++.+ .-+...++.+...+.......+
T Consensus 91 ~h~D~~eldaas~~~Vd~i-Reli~~~~~~p~~g~~KV~IIDEvh-------------~Ls~~a~NaLLKtLEEPP~~~~ 156 (618)
T PRK14951 91 RFVDYTELDAASNRGVDEV-QQLLEQAVYKPVQGRFKVFMIDEVH-------------MLTNTAFNAMLKTLEEPPEYLK 156 (618)
T ss_pred CCCceeecCcccccCHHHH-HHHHHHHHhCcccCCceEEEEEChh-------------hCCHHHHHHHHHhcccCCCCeE
Confidence 1122333333222222221 2222222111100 00000 1123445666665554445555
Q ss_pred EEEEc-CchHHHHh-hCCCceEeccCCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhccCCchh
Q 039990 207 IIVTT-RSMDVALK-MGSGKNYELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGLPLA 273 (1217)
Q Consensus 207 ilvTt-R~~~v~~~-~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 273 (1217)
+|++| ....+... ......++++.++.++..+.+.+.+...+ . .-..+..+.|++.++|-+--
T Consensus 157 fIL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~eg-i---~ie~~AL~~La~~s~GslR~ 221 (618)
T PRK14951 157 FVLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAEN-V---PAEPQALRLLARAARGSMRD 221 (618)
T ss_pred EEEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcC-C---CCCHHHHHHHHHHcCCCHHH
Confidence 65554 43333322 23346899999999999888887763322 1 11245678888888886633
No 109
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.31 E-value=5.8e-05 Score=87.61 Aligned_cols=169 Identities=15% Similarity=0.162 Sum_probs=82.7
Q ss_pred CCCCccEEeecCCCCCcccccccccccCcceEeeccCCCccccccccCCCCcccEEEEcCCCCCccccccCCCCCCcceE
Q 039990 930 LPVTLKCIQIEDCSNFKVLTSECQLSVAVEELTIDSCSNIESIAERFHDDACLRSIRLSYCKNLKSLPKGLNNLSHLHRR 1009 (1217)
Q Consensus 930 ~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L 1009 (1217)
...+|..|++.++.. ..+...+..+++|++|++++|. ++.+.. +..++.|+.|++++| .+..+ .++..+++|+.+
T Consensus 93 ~~~~l~~l~l~~n~i-~~i~~~l~~~~~L~~L~ls~N~-I~~i~~-l~~l~~L~~L~l~~N-~i~~~-~~~~~l~~L~~l 167 (414)
T KOG0531|consen 93 KLKSLEALDLYDNKI-EKIENLLSSLVNLQVLDLSFNK-ITKLEG-LSTLTLLKELNLSGN-LISDI-SGLESLKSLKLL 167 (414)
T ss_pred cccceeeeeccccch-hhcccchhhhhcchheeccccc-cccccc-hhhccchhhheeccC-cchhc-cCCccchhhhcc
Confidence 334666666666433 2222224556667777776643 333322 122455667777663 34444 345556666677
Q ss_pred EecCCCCCcccCC--CCCCCCcceEEEccCcCcccCCCCCCCCCcceEeeccCCCccccCCCCCCCC--CCeEEecCCCC
Q 039990 1010 SIQGCHNLVSLPE--DALPSNVVDVSIEDCDKLKAPLPTGKLSSLQLLTLIECPGIVFFPEEGLSTN--LTDLEISGDNI 1085 (1217)
Q Consensus 1010 ~l~~c~~l~~l~~--~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~--L~~L~l~~~~~ 1085 (1217)
++++| .++.+.. .....+++.+++.++..... .....+..+..+++.++ .+..+.....+.. |+.+++++++.
T Consensus 168 ~l~~n-~i~~ie~~~~~~~~~l~~l~l~~n~i~~i-~~~~~~~~l~~~~l~~n-~i~~~~~l~~~~~~~L~~l~l~~n~i 244 (414)
T KOG0531|consen 168 DLSYN-RIVDIENDELSELISLEELDLGGNSIREI-EGLDLLKKLVLLSLLDN-KISKLEGLNELVMLHLRELYLSGNRI 244 (414)
T ss_pred cCCcc-hhhhhhhhhhhhccchHHHhccCCchhcc-cchHHHHHHHHhhcccc-cceeccCcccchhHHHHHHhcccCcc
Confidence 77664 3444444 13345666666666654443 22223333333344332 2222221122222 66666666665
Q ss_pred CccccccccccCCcccceeeccC
Q 039990 1086 YKPLVKWGFDKFSSLRKHCINRC 1108 (1217)
Q Consensus 1086 ~~~~~~~~~~~l~~L~~L~l~~~ 1108 (1217)
.... ..+..+..+..|++.++
T Consensus 245 ~~~~--~~~~~~~~l~~l~~~~n 265 (414)
T KOG0531|consen 245 SRSP--EGLENLKNLPVLDLSSN 265 (414)
T ss_pred cccc--ccccccccccccchhhc
Confidence 5331 13345566666666653
No 110
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=97.28 E-value=0.0042 Score=63.23 Aligned_cols=142 Identities=15% Similarity=0.199 Sum_probs=80.1
Q ss_pred EEEEEEccCCchHHHHHHHHHhccccC--------------------CCCCeEEEEeCC-cccHHHHHHHHHHHhhcCCC
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDKLTD--------------------DFKPKAWVCVSD-DFDILRISKAILESITRSSC 165 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~~~~--------------------~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~ 165 (1217)
..+.++|..|+|||++|+.+.+..... .++...++.... .... +..+++.+.+.....
T Consensus 15 ~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~-~~i~~i~~~~~~~~~ 93 (188)
T TIGR00678 15 HAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKV-DQVRELVEFLSRTPQ 93 (188)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCH-HHHHHHHHHHccCcc
Confidence 678899999999999999987763211 222223333221 2222 222233344332211
Q ss_pred C-------CCChhHHHHHHHHHHHhcCcCHHHHHHhhcccCCCCCCcEEEEEcCch-HHHHhh-CCCceEeccCCChHHH
Q 039990 166 G-------LTDLNSVQLKLKEAVFKKNKSYELWQALKSPFMAGAPGSRIIVTTRSM-DVALKM-GSGKNYELKHLSDDDC 236 (1217)
Q Consensus 166 ~-------~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~-~v~~~~-~~~~~~~l~~l~~~~~ 236 (1217)
. .++.+.+ ..+.++.+...+......+.+|++|++. .+.... .....+++.+++.++.
T Consensus 94 ~~~~kviiide~~~l-------------~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~ 160 (188)
T TIGR00678 94 ESGRRVVIIEDAERM-------------NEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEAL 160 (188)
T ss_pred cCCeEEEEEechhhh-------------CHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHH
Confidence 0 0111111 1233445555555444566677777653 222211 2336899999999999
Q ss_pred HHHHHHHHhCCCCCCCCCchhhHHHHHHHhccCCch
Q 039990 237 WSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGLPL 272 (1217)
Q Consensus 237 ~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL 272 (1217)
.+.+.+. + . .++.++.|++.++|.|.
T Consensus 161 ~~~l~~~--g---i-----~~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 161 LQWLIRQ--G---I-----SEEAAELLLALAGGSPG 186 (188)
T ss_pred HHHHHHc--C---C-----CHHHHHHHHHHcCCCcc
Confidence 8888776 1 1 14578899999999885
No 111
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.27 E-value=0.0029 Score=66.79 Aligned_cols=171 Identities=20% Similarity=0.192 Sum_probs=86.9
Q ss_pred ccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCcccHHHHHHHHHHHhh
Q 039990 82 YGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDFDILRISKAILESIT 161 (1217)
Q Consensus 82 vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~ 161 (1217)
.|+.++....+..+.... ...+.+.|+|..|+|||+||+++++....... ...+++....... + ....
T Consensus 22 ~~~~~~~~~~l~~~~~~~----~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~-~~~~i~~~~~~~~------~-~~~~ 89 (227)
T PRK08903 22 AGENAELVARLRELAAGP----VADRFFYLWGEAGSGRSHLLQALVADASYGGR-NARYLDAASPLLA------F-DFDP 89 (227)
T ss_pred cCCcHHHHHHHHHHHhcc----CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCC-cEEEEehHHhHHH------H-hhcc
Confidence 455544433333332221 22357889999999999999999876322222 3445554332111 0 1110
Q ss_pred cCC-CCCCChhHHHHHHHHHHHhcCcCHHHHHHhhcccCC-CCCCc-EEEEEcCchHHHH--------hhCCCceEeccC
Q 039990 162 RSS-CGLTDLNSVQLKLKEAVFKKNKSYELWQALKSPFMA-GAPGS-RIIVTTRSMDVAL--------KMGSGKNYELKH 230 (1217)
Q Consensus 162 ~~~-~~~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~-~~~gs-~ilvTtR~~~v~~--------~~~~~~~~~l~~ 230 (1217)
... --.++.+.+..... +.+...+.. ...+. .||+|++...... .+.....+++++
T Consensus 90 ~~~~liiDdi~~l~~~~~-------------~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~p 156 (227)
T PRK08903 90 EAELYAVDDVERLDDAQQ-------------IALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKP 156 (227)
T ss_pred cCCEEEEeChhhcCchHH-------------HHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecC
Confidence 000 00111111100000 111111110 01233 4677776543221 223346889999
Q ss_pred CChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhccCCchhHHHHHHHh
Q 039990 231 LSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGLPLAARALGGLL 281 (1217)
Q Consensus 231 l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l 281 (1217)
+++++-..++.+.+-.. .. .-.+++.+.+++...|.+..+..+...+
T Consensus 157 l~~~~~~~~l~~~~~~~-~v---~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 157 LSDADKIAALKAAAAER-GL---QLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred CCHHHHHHHHHHHHHHc-CC---CCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 99988777776654221 11 1224678888889999998887766654
No 112
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=97.25 E-value=0.0021 Score=71.87 Aligned_cols=182 Identities=15% Similarity=0.125 Sum_probs=98.2
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhcc-ccCCCCCe--------EEEEeCCccc
Q 039990 78 EPAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDK-LTDDFKPK--------AWVCVSDDFD 148 (1217)
Q Consensus 78 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~-~~~~F~~~--------~wv~~~~~~~ 148 (1217)
..+++|.++..+.+.+.+..+. -...+.++|+.|+||+++|..+++.. ........ .-++ ...
T Consensus 18 ~~~iiGq~~~~~~L~~~~~~~r-----l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~--~~c- 89 (365)
T PRK07471 18 TTALFGHAAAEAALLDAYRSGR-----LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAID--PDH- 89 (365)
T ss_pred hhhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCC--CCC-
Confidence 4579999999999998887653 23578899999999999999987764 22211100 0000 000
Q ss_pred HHHHHHHHHHHhhcC---------CC-----CCCChhHHHHHHHHHHHhc----------CcC-----HHHHHHhhcccC
Q 039990 149 ILRISKAILESITRS---------SC-----GLTDLNSVQLKLKEAVFKK----------NKS-----YELWQALKSPFM 199 (1217)
Q Consensus 149 ~~~~~~~i~~~l~~~---------~~-----~~~~~~~~~~~l~~~l~~~----------~~~-----~~~~~~l~~~~~ 199 (1217)
...+.|...-..+ .. ..-.+++ .+.+.+.+..+ +|+ ......+...+.
T Consensus 90 --~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LE 166 (365)
T PRK07471 90 --PVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLE 166 (365)
T ss_pred --hHHHHHHccCCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHh
Confidence 0111111110000 00 0011222 12222222211 222 233444544444
Q ss_pred CCCCCcEEEEEcCchH-HHHhh-CCCceEeccCCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhccCCchhHHHH
Q 039990 200 AGAPGSRIIVTTRSMD-VALKM-GSGKNYELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGLPLAARAL 277 (1217)
Q Consensus 200 ~~~~gs~ilvTtR~~~-v~~~~-~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 277 (1217)
....++.+|++|.+.. +.... .....+.+.+++.++..+++.+.... .. .+....+++.++|.|.....+
T Consensus 167 epp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~-----~~---~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 167 EPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD-----LP---DDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred cCCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc-----CC---HHHHHHHHHHcCCCHHHHHHH
Confidence 4344666677666543 32222 23468999999999999999876411 11 122367899999999866544
Q ss_pred H
Q 039990 278 G 278 (1217)
Q Consensus 278 ~ 278 (1217)
.
T Consensus 239 l 239 (365)
T PRK07471 239 A 239 (365)
T ss_pred h
Confidence 3
No 113
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.24 E-value=0.0027 Score=74.38 Aligned_cols=172 Identities=12% Similarity=0.107 Sum_probs=98.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhcc-ccC-------------------CCCCe
Q 039990 79 PAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDK-LTD-------------------DFKPK 138 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~-~~~-------------------~F~~~ 138 (1217)
.++||-+..+..|..++.... -...+.++|+.|+||||+|+.+++.. ... .|..+
T Consensus 16 ~divGq~~v~~~L~~~~~~~~-----l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~ 90 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQY-----LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDL 90 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceE
Confidence 469999999999999997642 23567899999999999999988754 221 23334
Q ss_pred EEEEeCCcccHHHHHHHHHHHhhcCCCC-------CCChhHHHHHHHHHHHhcCcCHHHHHHhhcccCCCCCCcEEEEEc
Q 039990 139 AWVCVSDDFDILRISKAILESITRSSCG-------LTDLNSVQLKLKEAVFKKNKSYELWQALKSPFMAGAPGSRIIVTT 211 (1217)
Q Consensus 139 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~~gs~ilvTt 211 (1217)
+.+..+....+.++ +++++.+...... .++.+.+ ..+.++.+...+......+++|++|
T Consensus 91 ~eidaas~~~v~~i-R~l~~~~~~~p~~~~~kV~iIDE~~~l-------------s~~a~naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 91 FEVDAASRTKVEDT-RELLDNIPYAPTKGRFKVYLIDEVHML-------------SGHSFNALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred EEEcccccCCHHHH-HHHHHHHhhccccCCcEEEEEEChHhc-------------CHHHHHHHHHHHhccCCCeEEEEEE
Confidence 55554444444433 3344443322110 0111111 1233444444444444456666554
Q ss_pred Cc-hHHHHhh-CCCceEeccCCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhccCCchh
Q 039990 212 RS-MDVALKM-GSGKNYELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGLPLA 273 (1217)
Q Consensus 212 R~-~~v~~~~-~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 273 (1217)
.+ ..+.... .....+++++++.++..+.+.+.+-..+ . .-..+....|++.++|-+--
T Consensus 157 td~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~eg-i---~~~~~al~~ia~~s~GslR~ 216 (509)
T PRK14958 157 TDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEEN-V---EFENAALDLLARAANGSVRD 216 (509)
T ss_pred CChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcC-C---CCCHHHHHHHHHHcCCcHHH
Confidence 43 3333222 2235788999999987777666653221 1 11234567888888887643
No 114
>PF14516 AAA_35: AAA-like domain
Probab=97.19 E-value=0.058 Score=60.16 Aligned_cols=191 Identities=14% Similarity=0.161 Sum_probs=109.3
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCc-----ccHHHH
Q 039990 78 EPAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDD-----FDILRI 152 (1217)
Q Consensus 78 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~-----~~~~~~ 152 (1217)
.+-.|+|...-+++.+.+...+ ..+.|.|+-.+|||+|..++.+...+..|. ++++++..- .+..+.
T Consensus 10 ~~~Yi~R~~~e~~~~~~i~~~G-------~~~~I~apRq~GKTSll~~l~~~l~~~~~~-~v~id~~~~~~~~~~~~~~f 81 (331)
T PF14516_consen 10 SPFYIERPPAEQECYQEIVQPG-------SYIRIKAPRQMGKTSLLLRLLERLQQQGYR-CVYIDLQQLGSAIFSDLEQF 81 (331)
T ss_pred CCcccCchHHHHHHHHHHhcCC-------CEEEEECcccCCHHHHHHHHHHHHHHCCCE-EEEEEeecCCCcccCCHHHH
Confidence 3446688866777777776533 589999999999999999988764344554 446765541 245666
Q ss_pred HHHHHHHhhcCCCC-----------CCChhHHHHHHHHHHHhc--------CcCH-----------HHHHHhhcccCCCC
Q 039990 153 SKAILESITRSSCG-----------LTDLNSVQLKLKEAVFKK--------NKSY-----------ELWQALKSPFMAGA 202 (1217)
Q Consensus 153 ~~~i~~~l~~~~~~-----------~~~~~~~~~~l~~~l~~~--------~~~~-----------~~~~~l~~~~~~~~ 202 (1217)
++.++..+...-.- ..........+.+.+... .|+. +-+..++.......
T Consensus 82 ~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~ 161 (331)
T PF14516_consen 82 LRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRK 161 (331)
T ss_pred HHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcc
Confidence 66666555443221 111222333344433222 1111 12222332211111
Q ss_pred ----CCcE--EEEEcCchHHHHh-----hCCCceEeccCCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhccCCc
Q 039990 203 ----PGSR--IIVTTRSMDVALK-----MGSGKNYELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGLP 271 (1217)
Q Consensus 203 ----~gs~--ilvTtR~~~v~~~-----~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 271 (1217)
...- |++.+........ .+....++|++++.+|...|..++... .. ....++|...+||+|
T Consensus 162 ~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~-----~~---~~~~~~l~~~tgGhP 233 (331)
T PF14516_consen 162 NNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE-----FS---QEQLEQLMDWTGGHP 233 (331)
T ss_pred cCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc-----CC---HHHHHHHHHHHCCCH
Confidence 1111 2222211111111 122358899999999999998887422 11 223889999999999
Q ss_pred hhHHHHHHHhhcC
Q 039990 272 LAARALGGLLRSK 284 (1217)
Q Consensus 272 Lai~~~~~~l~~~ 284 (1217)
.-+..++..+...
T Consensus 234 ~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 234 YLVQKACYLLVEE 246 (331)
T ss_pred HHHHHHHHHHHHc
Confidence 9999999999764
No 115
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.19 E-value=0.012 Score=69.68 Aligned_cols=173 Identities=12% Similarity=0.114 Sum_probs=95.9
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhcc-ccC-------------------CCCCe
Q 039990 79 PAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDK-LTD-------------------DFKPK 138 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~-~~~-------------------~F~~~ 138 (1217)
.++||.+..+..|..++.... -...+.++|..|+||||+|+.+.+.. ... .|..+
T Consensus 16 ddIIGQe~vv~~L~~ai~~~r-----l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~Dv 90 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGR-----LHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDL 90 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccce
Confidence 579999999999999987642 23678899999999999999987753 211 12222
Q ss_pred EEEEeCCcccHHHHHHHHHHHhhcCCC-------CCCChhHHHHHHHHHHHhcCcCHHHHHHhhcccCCCCCCcEEEEEc
Q 039990 139 AWVCVSDDFDILRISKAILESITRSSC-------GLTDLNSVQLKLKEAVFKKNKSYELWQALKSPFMAGAPGSRIIVTT 211 (1217)
Q Consensus 139 ~wv~~~~~~~~~~~~~~i~~~l~~~~~-------~~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~~gs~ilvTt 211 (1217)
+.+.......+. ..+++++....... -.++.+. -+....+.+...+......+++|++|
T Consensus 91 lEidaAs~~gVd-~IRelle~a~~~P~~gk~KVIIIDEad~-------------Ls~~A~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 91 LEIDAASNTGID-NIREVLENAQYAPTAGKYKVYIIDEVHM-------------LSKSAFNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred EEEeccccCCHH-HHHHHHHHHHhhhhhCCcEEEEEECccc-------------cCHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 333333322222 22223222211000 0000000 01223344444443333456666666
Q ss_pred Cch-HHHHh-hCCCceEeccCCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhccCCchhH
Q 039990 212 RSM-DVALK-MGSGKNYELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGLPLAA 274 (1217)
Q Consensus 212 R~~-~v~~~-~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 274 (1217)
.+. .+... .+....+++..++.++..+.+.+.+-..+ . .-..+..+.|++.++|-+--+
T Consensus 157 td~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEg-i---~id~eAL~~Ia~~A~GslRdA 217 (709)
T PRK08691 157 TDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEK-I---AYEPPALQLLGRAAAGSMRDA 217 (709)
T ss_pred CCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcC-C---CcCHHHHHHHHHHhCCCHHHH
Confidence 543 22211 12225678889999999888887764322 1 112456789999998887433
No 116
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.15 E-value=0.0012 Score=74.01 Aligned_cols=68 Identities=16% Similarity=0.120 Sum_probs=54.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhcc-ccCCCCCeEEEEeCCcccHHHHHH
Q 039990 79 PAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDK-LTDDFKPKAWVCVSDDFDILRISK 154 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~-~~~~F~~~~wv~~~~~~~~~~~~~ 154 (1217)
.++++.++.++.+...|... +.|.++|++|+|||++|+++++.. ....|+.+.||.+.+..+..++..
T Consensus 175 ~d~~i~e~~le~l~~~L~~~--------~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~ 243 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK--------KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQ 243 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC--------CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhc
Confidence 45788899999999998753 467789999999999999998875 345677888999998887666554
No 117
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.15 E-value=0.0047 Score=73.58 Aligned_cols=174 Identities=14% Similarity=0.097 Sum_probs=98.8
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhcc-ccCCC---------------------
Q 039990 78 EPAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDK-LTDDF--------------------- 135 (1217)
Q Consensus 78 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~-~~~~F--------------------- 135 (1217)
-.++||.+..++.|...+..+. -...+.++|+.|+||||+|+.+++.. .....
T Consensus 23 f~dliGq~~~v~~L~~~~~~gr-----i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~ 97 (598)
T PRK09111 23 FDDLIGQEAMVRTLTNAFETGR-----IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIME 97 (598)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhc
Confidence 3579999999999999887642 33578899999999999999988764 22111
Q ss_pred ---CCeEEEEeCCcccHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhc---Cc-----CHHHHHHhhcccCCCCCC
Q 039990 136 ---KPKAWVCVSDDFDILRISKAILESITRSSCGLTDLNSVQLKLKEAVFKK---NK-----SYELWQALKSPFMAGAPG 204 (1217)
Q Consensus 136 ---~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~---~~-----~~~~~~~l~~~~~~~~~g 204 (1217)
..++++.......+.+ .++|.+.+....... ..| ++ +....+.+...+..-..+
T Consensus 98 g~h~Dv~e~~a~s~~gvd~-IReIie~~~~~P~~a--------------~~KVvIIDEad~Ls~~a~naLLKtLEePp~~ 162 (598)
T PRK09111 98 GRHVDVLEMDAASHTGVDD-IREIIESVRYRPVSA--------------RYKVYIIDEVHMLSTAAFNALLKTLEEPPPH 162 (598)
T ss_pred CCCCceEEecccccCCHHH-HHHHHHHHHhchhcC--------------CcEEEEEEChHhCCHHHHHHHHHHHHhCCCC
Confidence 1122222222111211 112222221110000 000 11 223455555555444456
Q ss_pred cEEEEEc-CchHHHHhh-CCCceEeccCCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhccCCchhHH
Q 039990 205 SRIIVTT-RSMDVALKM-GSGKNYELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGLPLAAR 275 (1217)
Q Consensus 205 s~ilvTt-R~~~v~~~~-~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 275 (1217)
+++|++| ....+.... .....+++..++.++....+.+.+-..+ . .-..+..+.|++.++|-+.-+.
T Consensus 163 ~~fIl~tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~keg-i---~i~~eAl~lIa~~a~Gdlr~al 231 (598)
T PRK09111 163 VKFIFATTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEG-V---EVEDEALALIARAAEGSVRDGL 231 (598)
T ss_pred eEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcC-C---CCCHHHHHHHHHHcCCCHHHHH
Confidence 6665544 444443222 2336889999999999998888763321 1 1123577888999999875444
No 118
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.13 E-value=0.0031 Score=76.74 Aligned_cols=166 Identities=17% Similarity=0.139 Sum_probs=82.6
Q ss_pred CccccchhhHH---HHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCC--cccHHHHH
Q 039990 79 PAVYGRNEDKA---RILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSD--DFDILRIS 153 (1217)
Q Consensus 79 ~~~vGr~~~~~---~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~--~~~~~~~~ 153 (1217)
.+|+|.+..+. .+.+.+.. +....+.++|++|+||||+|+.+++. ....|. .+.... ..++.+..
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~------~~~~slLL~GPpGtGKTTLA~aIA~~-~~~~f~---~lna~~~~i~dir~~i 97 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKA------DRVGSLILYGPPGVGKTTLARIIANH-TRAHFS---SLNAVLAGVKDLRAEV 97 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhc------CCCceEEEECCCCCCHHHHHHHHHHH-hcCcce---eehhhhhhhHHHHHHH
Confidence 46899988774 34455543 23346789999999999999999876 444441 111110 00111111
Q ss_pred HHHHHHhhcCCC----CCCChhHHHHHHHHHHHhcCcCHHHHHHhhcccCCCCCCcEEEE--EcCchHH--HHhh-CCCc
Q 039990 154 KAILESITRSSC----GLTDLNSVQLKLKEAVFKKNKSYELWQALKSPFMAGAPGSRIIV--TTRSMDV--ALKM-GSGK 224 (1217)
Q Consensus 154 ~~i~~~l~~~~~----~~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~~gs~ilv--TtR~~~v--~~~~-~~~~ 224 (1217)
..+...+..... -.++.+. .+...++.+...+. .|+.++| ||.+... .... ....
T Consensus 98 ~~a~~~l~~~~~~~IL~IDEIh~-------------Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~aL~SR~~ 161 (725)
T PRK13341 98 DRAKERLERHGKRTILFIDEVHR-------------FNKAQQDALLPWVE---NGTITLIGATTENPYFEVNKALVSRSR 161 (725)
T ss_pred HHHHHHhhhcCCceEEEEeChhh-------------CCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhhHhhcccc
Confidence 111111110000 0001110 11233444443332 3555555 3444321 1111 2245
Q ss_pred eEeccCCChHHHHHHHHHHHhCCC---CCCCCCchhhHHHHHHHhccCC
Q 039990 225 NYELKHLSDDDCWSVFLNHAFEGI---DTGTQGNFESTRQRVVAKCKGL 270 (1217)
Q Consensus 225 ~~~l~~l~~~~~~~lf~~~~~~~~---~~~~~~~~~~~~~~i~~~~~g~ 270 (1217)
.+++++++.++...++.+.+-... ......-.++..+.|++.+.|.
T Consensus 162 v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD 210 (725)
T PRK13341 162 LFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGD 210 (725)
T ss_pred ceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCC
Confidence 899999999999999988653100 0001112245667777777765
No 119
>PRK08118 topology modulation protein; Reviewed
Probab=97.06 E-value=0.00036 Score=68.89 Aligned_cols=34 Identities=32% Similarity=0.617 Sum_probs=27.4
Q ss_pred EEEEEEccCCchHHHHHHHHHhcc-cc-CCCCCeEE
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDK-LT-DDFKPKAW 140 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~-~~-~~F~~~~w 140 (1217)
+.|.|+|++|+||||||+++++.. +. -+||..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 368899999999999999999875 22 45677775
No 120
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.05 E-value=0.018 Score=64.10 Aligned_cols=186 Identities=16% Similarity=0.158 Sum_probs=100.6
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhccccCC---CCCeEEEEeCCcccHHHHHH
Q 039990 78 EPAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTDD---FKPKAWVCVSDDFDILRISK 154 (1217)
Q Consensus 78 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~---F~~~~wv~~~~~~~~~~~~~ 154 (1217)
...++|-++..+.+...+... .....+.|+|..|+||||+|..+++...... +.... .......-...+
T Consensus 22 ~~~l~Gh~~a~~~L~~a~~~g-----rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~---~~~~~~~c~~c~ 93 (351)
T PRK09112 22 NTRLFGHEEAEAFLAQAYREG-----KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPET---LADPDPASPVWR 93 (351)
T ss_pred hhhccCcHHHHHHHHHHHHcC-----CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccc---cCCCCCCCHHHH
Confidence 457999999999999998765 3345788999999999999999887642211 11110 000111111222
Q ss_pred HHHHHhh-------cCC-C------CCCChhHHHHHHHHHHHhc----------CcCH-----HHHHHhhcccCCCCCCc
Q 039990 155 AILESIT-------RSS-C------GLTDLNSVQLKLKEAVFKK----------NKSY-----ELWQALKSPFMAGAPGS 205 (1217)
Q Consensus 155 ~i~~~l~-------~~~-~------~~~~~~~~~~~l~~~l~~~----------~~~~-----~~~~~l~~~~~~~~~gs 205 (1217)
.|...-. .+. . ..-..++. +.+.+.+... +|+. ...+.+...+.....+.
T Consensus 94 ~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~i-R~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~ 172 (351)
T PRK09112 94 QIAQGAHPNLLHITRPFDEKTGKFKTAITVDEI-RRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARA 172 (351)
T ss_pred HHHcCCCCCEEEeecccccccccccccCCHHHH-HHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCc
Confidence 2222211 000 0 01112332 2333333321 2322 33344444443333344
Q ss_pred E-EEEEcCchHHHHhh-CCCceEeccCCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhccCCchhHHHHH
Q 039990 206 R-IIVTTRSMDVALKM-GSGKNYELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGLPLAARALG 278 (1217)
Q Consensus 206 ~-ilvTtR~~~v~~~~-~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~ 278 (1217)
. |++|++...+.... .....+++.+++.++..+++.+.+.. . . -..+.+..|++.++|.|.....+.
T Consensus 173 ~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~---~--~-~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 173 LFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSS---Q--G-SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred eEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcc---c--C-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4 45554443332222 22368999999999999999874311 1 1 124457889999999998665443
No 121
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.05 E-value=0.0043 Score=73.31 Aligned_cols=178 Identities=13% Similarity=0.121 Sum_probs=99.1
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhcc-ccC-------------------CCCCe
Q 039990 79 PAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDK-LTD-------------------DFKPK 138 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~-~~~-------------------~F~~~ 138 (1217)
.++||.+..+..+..++.... -...+.++|..|+||||+|+.+++.. ... .|...
T Consensus 16 ~divGq~~v~~~L~~~i~~~~-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~ 90 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQR-----LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDL 90 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 468999999999998887642 23567899999999999999987653 211 23334
Q ss_pred EEEEeCCcccHHHHHHHHHHHhhcCCCC-------CCChhHHHHHHHHHHHhcCcCHHHHHHhhcccCCCCCCcEEEEEc
Q 039990 139 AWVCVSDDFDILRISKAILESITRSSCG-------LTDLNSVQLKLKEAVFKKNKSYELWQALKSPFMAGAPGSRIIVTT 211 (1217)
Q Consensus 139 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~~gs~ilvTt 211 (1217)
+++..+....+.+ .+++++........ .++.+. -.....+.+...+......+.+|.+|
T Consensus 91 ~ei~~~~~~~vd~-ir~l~~~~~~~p~~~~~kVvIIDEad~-------------ls~~a~naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 91 IEVDAASNTQVDA-MRELLDNAQYAPTRGRFKVYIIDEVHM-------------LSKSAFNAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred eEeeccccCCHHH-HHHHHHHHhhCcccCCceEEEEcCccc-------------CCHHHHHHHHHHHhCCCCCEEEEEEe
Confidence 4454333332222 22333333221110 000010 11233444555554434455555555
Q ss_pred Cc-hHHHHhh-CCCceEeccCCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhccCCch-hHHHHHH
Q 039990 212 RS-MDVALKM-GSGKNYELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGLPL-AARALGG 279 (1217)
Q Consensus 212 R~-~~v~~~~-~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~~~ 279 (1217)
.+ +.+.... .....+++++++.++..+.+.+.+-..+ . .-..+..+.|++.++|.+- |+..+-.
T Consensus 157 ~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~eg-i---~~~~~al~~la~~s~Gslr~al~lldq 223 (527)
T PRK14969 157 TDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQEN-I---PFDATALQLLARAAAGSMRDALSLLDQ 223 (527)
T ss_pred CChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC-C---CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 43 3322111 1225789999999998888877653221 1 1124566888999999663 4444433
No 122
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.04 E-value=0.0066 Score=69.60 Aligned_cols=174 Identities=12% Similarity=0.067 Sum_probs=96.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhcc-ccCCCCCe-------------------
Q 039990 79 PAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDK-LTDDFKPK------------------- 138 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~-~~~~F~~~------------------- 138 (1217)
.+++|.+...+.|..++..+. -...+.++|+.|+||||+|..+++.. ....++..
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~-----~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~ 90 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGR-----VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDF 90 (397)
T ss_pred hhccChHHHHHHHHHHHHhCC-----cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHH
Confidence 468999988888888886542 23468899999999999999988764 22211111
Q ss_pred --------EEEEeCCcccHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhc----Cc-----CHHHHHHhhcccCCC
Q 039990 139 --------AWVCVSDDFDILRISKAILESITRSSCGLTDLNSVQLKLKEAVFKK----NK-----SYELWQALKSPFMAG 201 (1217)
Q Consensus 139 --------~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~----~~-----~~~~~~~l~~~~~~~ 201 (1217)
..+.......+.++ +++.+.+..... ..++ ++ ....++.+...+...
T Consensus 91 ~~~~~~n~~~~~~~~~~~id~I-r~l~~~~~~~p~---------------~~~~kvvIIdea~~l~~~~~~~LLk~LEep 154 (397)
T PRK14955 91 DAGTSLNISEFDAASNNSVDDI-RLLRENVRYGPQ---------------KGRYRVYIIDEVHMLSIAAFNAFLKTLEEP 154 (397)
T ss_pred hcCCCCCeEeecccccCCHHHH-HHHHHHHhhchh---------------cCCeEEEEEeChhhCCHHHHHHHHHHHhcC
Confidence 11111111111111 122222211100 0000 11 224566666666555
Q ss_pred CCCcEEEEEc-CchHHHHhh-CCCceEeccCCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhccCCch-hHHHH
Q 039990 202 APGSRIIVTT-RSMDVALKM-GSGKNYELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGLPL-AARAL 277 (1217)
Q Consensus 202 ~~gs~ilvTt-R~~~v~~~~-~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~ 277 (1217)
.+.+.+|++| +...+.... .....+++++++.++..+.+...+-..+ ..-..+.++.|++.++|.+- |+..+
T Consensus 155 ~~~t~~Il~t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g----~~i~~~al~~l~~~s~g~lr~a~~~L 229 (397)
T PRK14955 155 PPHAIFIFATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEG----ISVDADALQLIGRKAQGSMRDAQSIL 229 (397)
T ss_pred CCCeEEEEEeCChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 5566665554 444433222 1224788999999998888877653211 11224678899999999764 44433
No 123
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=96.99 E-value=0.0055 Score=69.84 Aligned_cols=51 Identities=25% Similarity=0.229 Sum_probs=36.7
Q ss_pred CccccchhhHHHHHHHHhcCCCC-------CCCCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 79 PAVYGRNEDKARILDMVLKNDPS-------DAANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.++.|.+..++++.+.+.-.-.. +-...+-|.++|++|.|||++|+++++.
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~e 240 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANE 240 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 35678888888888776421100 0023467889999999999999999986
No 124
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.98 E-value=0.0036 Score=78.35 Aligned_cols=45 Identities=24% Similarity=0.484 Sum_probs=38.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 79 PAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
..+|||++++.++++.|..... .-+.++|.+|+||||+|..++++
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~~------~n~lLvG~pGvGKTal~~~La~~ 231 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRRQ------NNPILTGEAGVGKTAVVEGLALR 231 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCCc------CceeEECCCCCCHHHHHHHHHHH
Confidence 4699999999999999876532 24568999999999999998876
No 125
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.96 E-value=0.0003 Score=71.58 Aligned_cols=84 Identities=23% Similarity=0.219 Sum_probs=54.8
Q ss_pred CCCCcceEEEcCCCCcccccccccccccChhhhcccccCcEEecccccc---cccccccccccccccEEeecCCcccc--
Q 039990 479 PKCKKLRVLSLEKDNIAEVPISIGCLKCLPEAITSLFNLEILILSYCWC---LLKLPSSIGNLVNLHHLDIEGADRLC-- 553 (1217)
Q Consensus 479 ~~l~~Lr~L~L~~~~i~~lp~~i~~L~~lp~~i~~L~~L~~L~L~~~~~---l~~lp~~i~~L~~L~~L~l~~~~~l~-- 553 (1217)
...+.++.|||.+|.|+...+ +-.-+.+|++|++|+|+.|.. |+.+| -.+++|++|-|.|+ .+.
T Consensus 68 ~~~~~v~elDL~~N~iSdWse-------I~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~nl~~lVLNgT-~L~w~ 136 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSE-------IGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKNLRVLVLNGT-GLSWT 136 (418)
T ss_pred HHhhhhhhhhcccchhccHHH-------HHHHHhcCccceEeeccCCcCCCccccCc---ccccceEEEEEcCC-CCChh
Confidence 356688889999998876442 223356788899999988731 23333 35678899888887 332
Q ss_pred ccCCCCccCccccccccccc
Q 039990 554 ELPLGMKELKCLRTLTDFIN 573 (1217)
Q Consensus 554 ~lp~~i~~L~~L~~L~~~~n 573 (1217)
.....+..+..+++|++..|
T Consensus 137 ~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 137 QSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred hhhhhhhcchhhhhhhhccc
Confidence 22344666677777766544
No 126
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.94 E-value=0.012 Score=72.81 Aligned_cols=171 Identities=10% Similarity=0.009 Sum_probs=96.1
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhcc-ccCCC---------------------C
Q 039990 79 PAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDK-LTDDF---------------------K 136 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~-~~~~F---------------------~ 136 (1217)
.++||.+..++.|...+.... -...+.++|..|+||||+|+.+.+.. ..... .
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~r-----i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~ 89 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGR-----INHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSL 89 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCC
Confidence 469999999999999987642 23567899999999999999988764 22211 1
Q ss_pred CeEEEEeCCcccHHHHHHHHHHHhhcCCCC-------CCChhHHHHHHHHHHHhcCcCHHHHHHhhcccCCCCCCcEEEE
Q 039990 137 PKAWVCVSDDFDILRISKAILESITRSSCG-------LTDLNSVQLKLKEAVFKKNKSYELWQALKSPFMAGAPGSRIIV 209 (1217)
Q Consensus 137 ~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~~gs~ilv 209 (1217)
.++++.......+.++ +++.+.+...... .++.+. -....++.|...+..-...+.+|+
T Consensus 90 dv~eidaas~~~Vd~i-R~l~~~~~~~p~~~~~KV~IIDEad~-------------lt~~a~NaLLK~LEEpP~~~~fIl 155 (824)
T PRK07764 90 DVTEIDAASHGGVDDA-RELRERAFFAPAESRYKIFIIDEAHM-------------VTPQGFNALLKIVEEPPEHLKFIF 155 (824)
T ss_pred cEEEecccccCCHHHH-HHHHHHHHhchhcCCceEEEEechhh-------------cCHHHHHHHHHHHhCCCCCeEEEE
Confidence 1233332222222222 1122221111000 001111 122445556666655445666555
Q ss_pred EcC-chHHHHhh-CCCceEeccCCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhccCCch
Q 039990 210 TTR-SMDVALKM-GSGKNYELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGLPL 272 (1217)
Q Consensus 210 TtR-~~~v~~~~-~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL 272 (1217)
+|. ...+.... .....|++..++.++..+.+.+..-..+ . .-..+....|++.++|-+.
T Consensus 156 ~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EG-v---~id~eal~lLa~~sgGdlR 216 (824)
T PRK07764 156 ATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEG-V---PVEPGVLPLVIRAGGGSVR 216 (824)
T ss_pred EeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcC-C---CCCHHHHHHHHHHcCCCHH
Confidence 554 33443322 3346889999999998888877642211 1 1123456788999999774
No 127
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.92 E-value=7.8e-05 Score=84.85 Aligned_cols=114 Identities=25% Similarity=0.311 Sum_probs=70.1
Q ss_pred hhhhhhcCCCCcceEEEcCCCCcccccccccccccChhhhcccccCcEEeccccccccccccc-ccccccccEEeecCCc
Q 039990 472 MVLSDLLPKCKKLRVLSLEKDNIAEVPISIGCLKCLPEAITSLFNLEILILSYCWCLLKLPSS-IGNLVNLHHLDIEGAD 550 (1217)
Q Consensus 472 ~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~ 550 (1217)
..++..+.-++.|+.|+|++|+++.. ..+..+.+|++|||++| .+..+|.- ....+ |+.|.+++|
T Consensus 177 ~~mD~SLqll~ale~LnLshNk~~~v-----------~~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~-L~~L~lrnN- 242 (1096)
T KOG1859|consen 177 VLMDESLQLLPALESLNLSHNKFTKV-----------DNLRRLPKLKHLDLSYN-CLRHVPQLSMVGCK-LQLLNLRNN- 242 (1096)
T ss_pred HhHHHHHHHHHHhhhhccchhhhhhh-----------HHHHhcccccccccccc-hhccccccchhhhh-heeeeeccc-
Confidence 34455566666777777777777654 24666777777777777 67777752 22333 777777777
Q ss_pred cccccCCCCccCcccccccccccccChhhhHHHHhcCCCCCCeEEEEecCC
Q 039990 551 RLCELPLGMKELKCLRTLTDFINVIDSQEANEAMLRGKKDLEVLKLVWSGG 601 (1217)
Q Consensus 551 ~l~~lp~~i~~L~~L~~L~~~~n~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 601 (1217)
.++.+ .+|.+|++|+.|++..|.+..-... ..+..+..|++|.+..|..
T Consensus 243 ~l~tL-~gie~LksL~~LDlsyNll~~hseL-~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 243 ALTTL-RGIENLKSLYGLDLSYNLLSEHSEL-EPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred HHHhh-hhHHhhhhhhccchhHhhhhcchhh-hHHHHHHHHHHHhhcCCcc
Confidence 66666 4677777777777776665432111 1133455566666655543
No 128
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=96.91 E-value=0.014 Score=64.92 Aligned_cols=157 Identities=15% Similarity=0.234 Sum_probs=80.4
Q ss_pred CCCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCcccHHHHHHHH
Q 039990 77 SEPAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDFDILRISKAI 156 (1217)
Q Consensus 77 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 156 (1217)
.+.-++|-......-...-....++ .....+.|||..|.|||.|++++.+. .....+....+.++.. ....++
T Consensus 86 FdnFv~g~~N~~A~aa~~~va~~~g--~~~nplfi~G~~GlGKTHLl~Aign~-~~~~~~~a~v~y~~se----~f~~~~ 158 (408)
T COG0593 86 FDNFVVGPSNRLAYAAAKAVAENPG--GAYNPLFIYGGVGLGKTHLLQAIGNE-ALANGPNARVVYLTSE----DFTNDF 158 (408)
T ss_pred hhheeeCCchHHHHHHHHHHHhccC--CcCCcEEEECCCCCCHHHHHHHHHHH-HHhhCCCceEEeccHH----HHHHHH
Confidence 3445566554443332222222211 24568999999999999999999987 4445543333333322 222333
Q ss_pred HHHhhcCCCCCCChhHHHHHH--H-------HHHHhcCcCHHHHHHhhcccCCCCCCcEEEEEcCch---------HHHH
Q 039990 157 LESITRSSCGLTDLNSVQLKL--K-------EAVFKKNKSYELWQALKSPFMAGAPGSRIIVTTRSM---------DVAL 218 (1217)
Q Consensus 157 ~~~l~~~~~~~~~~~~~~~~l--~-------~~l~~~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~---------~v~~ 218 (1217)
+..+... ..++..... . +.+.++....+..-.+...+.. .|-.||+|++.. ++..
T Consensus 159 v~a~~~~-----~~~~Fk~~y~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~--~~kqIvltsdr~P~~l~~~~~rL~S 231 (408)
T COG0593 159 VKALRDN-----EMEKFKEKYSLDLLLIDDIQFLAGKERTQEEFFHTFNALLE--NGKQIVLTSDRPPKELNGLEDRLRS 231 (408)
T ss_pred HHHHHhh-----hHHHHHHhhccCeeeechHhHhcCChhHHHHHHHHHHHHHh--cCCEEEEEcCCCchhhccccHHHHH
Confidence 3332211 001111000 0 0111111111111112222222 344899999653 3344
Q ss_pred hhCCCceEeccCCChHHHHHHHHHHHhCC
Q 039990 219 KMGSGKNYELKHLSDDDCWSVFLNHAFEG 247 (1217)
Q Consensus 219 ~~~~~~~~~l~~l~~~~~~~lf~~~~~~~ 247 (1217)
++...-++++.+.+.+....++.+++...
T Consensus 232 R~~~Gl~~~I~~Pd~e~r~aiL~kka~~~ 260 (408)
T COG0593 232 RLEWGLVVEIEPPDDETRLAILRKKAEDR 260 (408)
T ss_pred HHhceeEEeeCCCCHHHHHHHHHHHHHhc
Confidence 55556799999999999999999977443
No 129
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=96.90 E-value=0.0032 Score=71.84 Aligned_cols=51 Identities=24% Similarity=0.212 Sum_probs=37.7
Q ss_pred CccccchhhHHHHHHHHhcCCCC-------CCCCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 79 PAVYGRNEDKARILDMVLKNDPS-------DAANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.++.|+++.++++.+.+...-.. +-..++-|.++|++|+|||++|+++++.
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~ 188 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE 188 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHH
Confidence 35779999999998876321100 0033467889999999999999999886
No 130
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.88 E-value=0.028 Score=65.18 Aligned_cols=157 Identities=10% Similarity=0.102 Sum_probs=89.5
Q ss_pred EEEEEEccCCchHHHHHHHHHhccccCCC--CCeEEEEeCCcccHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDKLTDDF--KPKAWVCVSDDFDILRISKAILESITRSSCGLTDLNSVQLKLKEAVFKK 184 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~F--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 184 (1217)
..+.|+|..|+|||+|++++++.. .... ..+++++ ..++...+...+.... + ....+.+.+..-
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l-~~~~~~~~v~yv~------~~~f~~~~~~~l~~~~------~-~~~~~~~~~~~~ 207 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYI-ESNFSDLKVSYMS------GDEFARKAVDILQKTH------K-EIEQFKNEICQN 207 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHH-HHhCCCCeEEEEE------HHHHHHHHHHHHHHhh------h-HHHHHHHHhccC
Confidence 468899999999999999998852 2222 2234443 3445556655554211 1 111122221111
Q ss_pred ----CcCH------HHH-HHhhcccCC-CCCCcEEEEEcCch---------HHHHhhCCCceEeccCCChHHHHHHHHHH
Q 039990 185 ----NKSY------ELW-QALKSPFMA-GAPGSRIIVTTRSM---------DVALKMGSGKNYELKHLSDDDCWSVFLNH 243 (1217)
Q Consensus 185 ----~~~~------~~~-~~l~~~~~~-~~~gs~ilvTtR~~---------~v~~~~~~~~~~~l~~l~~~~~~~lf~~~ 243 (1217)
+|+. +.| +.+...+.. ...|..||+|+... .+..++..+-++++++++.++-.+++.++
T Consensus 208 dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~ 287 (450)
T PRK14087 208 DVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKE 287 (450)
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHH
Confidence 1111 122 223322221 12345688887643 22334445568899999999999999998
Q ss_pred HhCCCCCCCCCchhhHHHHHHHhccCCchhHHHHHH
Q 039990 244 AFEGIDTGTQGNFESTRQRVVAKCKGLPLAARALGG 279 (1217)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~ 279 (1217)
+-..+ .. ..-.+++...|++.++|.|=.+..+..
T Consensus 288 ~~~~g-l~-~~l~~evl~~Ia~~~~gd~R~L~gaL~ 321 (450)
T PRK14087 288 IKNQN-IK-QEVTEEAINFISNYYSDDVRKIKGSVS 321 (450)
T ss_pred HHhcC-CC-CCCCHHHHHHHHHccCCCHHHHHHHHH
Confidence 74321 10 122356888999999999877765543
No 131
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=96.88 E-value=0.016 Score=69.58 Aligned_cols=177 Identities=12% Similarity=0.123 Sum_probs=97.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhcc-ccCCC----------------CCeEEE
Q 039990 79 PAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDK-LTDDF----------------KPKAWV 141 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~-~~~~F----------------~~~~wv 141 (1217)
.+++|.+..+..|...+.... -...+.++|+.|+||||+|+.+++.. ..... ..++++
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~r-----l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dviei 92 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNK-----ISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEM 92 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEE
Confidence 468999999999999887642 23577899999999999999988754 21110 011222
Q ss_pred EeCCcccHHHHHHHHHHHhhcCCCC-------CCChhHHHHHHHHHHHhcCcCHHHHHHhhcccCCCCCCcE-EEEEcCc
Q 039990 142 CVSDDFDILRISKAILESITRSSCG-------LTDLNSVQLKLKEAVFKKNKSYELWQALKSPFMAGAPGSR-IIVTTRS 213 (1217)
Q Consensus 142 ~~~~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~~gs~-ilvTtR~ 213 (1217)
.......+.+ .+++.+.+...... .++.+.+ ....++.+...+........ |++|++.
T Consensus 93 daasn~~vd~-IReLie~~~~~P~~g~~KV~IIDEa~~L-------------T~~A~NALLKtLEEPP~~tifILaTte~ 158 (725)
T PRK07133 93 DAASNNGVDE-IRELIENVKNLPTQSKYKIYIIDEVHML-------------SKSAFNALLKTLEEPPKHVIFILATTEV 158 (725)
T ss_pred eccccCCHHH-HHHHHHHHHhchhcCCCEEEEEEChhhC-------------CHHHHHHHHHHhhcCCCceEEEEEcCCh
Confidence 2211111111 12222222211100 0011111 12345555554443333444 4455555
Q ss_pred hHHHHh-hCCCceEeccCCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhccCCc-hhHHHHH
Q 039990 214 MDVALK-MGSGKNYELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGLP-LAARALG 278 (1217)
Q Consensus 214 ~~v~~~-~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-Lai~~~~ 278 (1217)
..+... ......+++.+++.++..+.+...+-..+ . .-..+.++.|++.++|-+ .|+..+-
T Consensus 159 ~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~keg-I---~id~eAl~~LA~lS~GslR~AlslLe 221 (725)
T PRK07133 159 HKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKEN-I---SYEKNALKLIAKLSSGSLRDALSIAE 221 (725)
T ss_pred hhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcC-C---CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 444332 22346899999999999888887653321 1 112456788999998855 4544443
No 132
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.87 E-value=0.012 Score=69.58 Aligned_cols=180 Identities=14% Similarity=0.115 Sum_probs=99.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhcc-ccCCC-------------------CCe
Q 039990 79 PAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDK-LTDDF-------------------KPK 138 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~-~~~~F-------------------~~~ 138 (1217)
.+++|-+..++.|.+.+.... -...+.++|..|+||||+|+.+++.. ..... ..+
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~r-----i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv 90 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENR-----VAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDV 90 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCce
Confidence 468999888888888886542 23578889999999999999988764 21111 113
Q ss_pred EEEEeCCcccHHHHHHHHHHHhhcCCCC-------CCChhHHHHHHHHHHHhcCcCHHHHHHhhcccCCCCCCcEEEEEc
Q 039990 139 AWVCVSDDFDILRISKAILESITRSSCG-------LTDLNSVQLKLKEAVFKKNKSYELWQALKSPFMAGAPGSRIIVTT 211 (1217)
Q Consensus 139 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~~gs~ilvTt 211 (1217)
+++.......+.++ +.|.+.+...... .++.+. -..+.++.+...+........+|++|
T Consensus 91 ~eId~a~~~~Id~i-R~L~~~~~~~p~~g~~kVIIIDEad~-------------Lt~~a~naLLk~LEEP~~~~ifILaT 156 (624)
T PRK14959 91 VEIDGASNRGIDDA-KRLKEAIGYAPMEGRYKVFIIDEAHM-------------LTREAFNALLKTLEEPPARVTFVLAT 156 (624)
T ss_pred EEEecccccCHHHH-HHHHHHHHhhhhcCCceEEEEEChHh-------------CCHHHHHHHHHHhhccCCCEEEEEec
Confidence 33432222222221 1222222111000 001111 11233455555554333445555555
Q ss_pred Cc-hHHHHhh-CCCceEeccCCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhccCC-chhHHHHHHHh
Q 039990 212 RS-MDVALKM-GSGKNYELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGL-PLAARALGGLL 281 (1217)
Q Consensus 212 R~-~~v~~~~-~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-PLai~~~~~~l 281 (1217)
.. ..+.... .....+++++++.++..+.+.+.+.... . .-..+.++.|++.++|- -.|+..+...+
T Consensus 157 t~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~eg-i---~id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 157 TEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREG-V---DYDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred CChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcC-C---CCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 44 4443222 2235789999999999988887664321 1 11245678889999885 46777766544
No 133
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.86 E-value=0.00013 Score=87.85 Aligned_cols=35 Identities=20% Similarity=0.215 Sum_probs=17.6
Q ss_pred cccccceEeccCCCCcc--cccCCCCCCCccEEeecC
Q 039990 907 YLDLESLSVQSCPSLTR--LWSSGRLPVTLKCIQIED 941 (1217)
Q Consensus 907 ~~~L~~L~l~~~~~l~~--l~~~~~~~~~L~~L~l~~ 941 (1217)
+++++.+.+.+|..+.. +.+.......|+.|++++
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 223 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG 223 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence 34466666666655554 222333334555555554
No 134
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.84 E-value=0.012 Score=73.21 Aligned_cols=46 Identities=24% Similarity=0.402 Sum_probs=38.1
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhcc
Q 039990 79 PAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDK 130 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 130 (1217)
..++||+++++++++.|..... .-+.++|.+|+|||++|+.+++..
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~~------~n~lL~G~pG~GKT~l~~~la~~~ 227 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRKK------NNPLLVGEPGVGKTAIAEGLALRI 227 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCCC------CceEEECCCCCCHHHHHHHHHHHH
Confidence 4699999999999998876432 235689999999999999998863
No 135
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.84 E-value=0.05 Score=62.97 Aligned_cols=152 Identities=11% Similarity=0.142 Sum_probs=81.0
Q ss_pred cEEEEEEccCCchHHHHHHHHHhccccCCCC--CeEEEEeCCcccHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHh
Q 039990 106 FRVIPLVGMGGIGKTTLAQEVYNDKLTDDFK--PKAWVCVSDDFDILRISKAILESITRSSCGLTDLNSVQLKLKEAVFK 183 (1217)
Q Consensus 106 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 183 (1217)
...+.|+|..|+|||+||+++++.. ....+ .++++++ .++...+...+... ..+.....+... +
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l-~~~~~~~~v~yi~~------~~~~~~~~~~~~~~-----~~~~~~~~~~~~--d 201 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEI-LENNPNAKVVYVSS------EKFTNDFVNALRNN-----KMEEFKEKYRSV--D 201 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH-HHhCCCCcEEEEEH------HHHHHHHHHHHHcC-----CHHHHHHHHHhC--C
Confidence 3568899999999999999999873 33332 3455543 23333444444321 111111111110 0
Q ss_pred c--CcCHH------HH-HHhhcccCC-CCCCcEEEEEcCchH---------HHHhhCCCceEeccCCChHHHHHHHHHHH
Q 039990 184 K--NKSYE------LW-QALKSPFMA-GAPGSRIIVTTRSMD---------VALKMGSGKNYELKHLSDDDCWSVFLNHA 244 (1217)
Q Consensus 184 ~--~~~~~------~~-~~l~~~~~~-~~~gs~ilvTtR~~~---------v~~~~~~~~~~~l~~l~~~~~~~lf~~~~ 244 (1217)
- +|+.+ .+ +.+...+.. ...|..||+|+.... +..++.....+++++.+.++-.+++.+.+
T Consensus 202 lLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~ 281 (405)
T TIGR00362 202 LLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKA 281 (405)
T ss_pred EEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHH
Confidence 0 11111 11 112221111 013456888876422 12222333578999999999999999987
Q ss_pred hCCCCCCCCCchhhHHHHHHHhccCCchhHH
Q 039990 245 FEGIDTGTQGNFESTRQRVVAKCKGLPLAAR 275 (1217)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 275 (1217)
.... . .-.+++...|++.+.|..-.+.
T Consensus 282 ~~~~-~---~l~~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 282 EEEG-L---ELPDEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred HHcC-C---CCCHHHHHHHHHhcCCCHHHHH
Confidence 4422 1 1125677888888887665433
No 136
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.84 E-value=0.013 Score=63.14 Aligned_cols=50 Identities=24% Similarity=0.198 Sum_probs=33.1
Q ss_pred ccccchhhHHHHHHHHhc---------CCCCCCCCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 80 AVYGRNEDKARILDMVLK---------NDPSDAANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 80 ~~vGr~~~~~~l~~~L~~---------~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.++|.+..++++.+.... .+-...+...-+.++|++|+||||+|+.+++.
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~ 65 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKL 65 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHH
Confidence 478888777666433211 11111134456789999999999999998765
No 137
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.83 E-value=0.00012 Score=88.21 Aligned_cols=111 Identities=21% Similarity=0.282 Sum_probs=65.1
Q ss_pred CCCccEEeecCCCCCcc--cccccccccCcceEeeccC-CCccccc----cccCCCCcccEEEEcCCCCCcccc-ccC-C
Q 039990 931 PVTLKCIQIEDCSNFKV--LTSECQLSVAVEELTIDSC-SNIESIA----ERFHDDACLRSIRLSYCKNLKSLP-KGL-N 1001 (1217)
Q Consensus 931 ~~~L~~L~l~~~~~l~~--~~~~~~~l~~L~~L~l~~~-~~l~~l~----~~~~~l~~L~~L~L~~c~~l~~l~-~~l-~ 1001 (1217)
.+.|+.|.+.+|..+.. +.......+.|++|++++| ......+ .....+.+|+.|+++.|..+.+.- ..+ .
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 34677788888777665 3345556788888888773 2222221 222336777888888877554431 111 2
Q ss_pred CCCCcceEEecCCCCCcccCC---CCCCCCcceEEEccCcCcc
Q 039990 1002 NLSHLHRRSIQGCHNLVSLPE---DALPSNVVDVSIEDCDKLK 1041 (1217)
Q Consensus 1002 ~l~~L~~L~l~~c~~l~~l~~---~~~~~~L~~L~l~~~~~l~ 1041 (1217)
.+++|+.|.+.+|..+++-.- ....++|++|++++|..+.
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~ 309 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLT 309 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccch
Confidence 367788888777776443210 1123457777777776653
No 138
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.80 E-value=0.0089 Score=66.88 Aligned_cols=46 Identities=24% Similarity=0.216 Sum_probs=38.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 79 PAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.+++|.++..+.+..++... ....++.++|.+|+|||++|+.+++.
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~-----~~~~~lll~G~~G~GKT~la~~l~~~ 66 (316)
T PHA02544 21 DECILPAADKETFKSIVKKG-----RIPNMLLHSPSPGTGKTTVAKALCNE 66 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcC-----CCCeEEEeeCcCCCCHHHHHHHHHHH
Confidence 57899999999999888643 33468888999999999999999876
No 139
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.77 E-value=0.028 Score=67.18 Aligned_cols=190 Identities=12% Similarity=0.064 Sum_probs=96.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhcc-ccCCCCCeEEEEe-CCcccHHHHHHHH
Q 039990 79 PAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDK-LTDDFKPKAWVCV-SDDFDILRISKAI 156 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~-~~~~F~~~~wv~~-~~~~~~~~~~~~i 156 (1217)
.++||.+..+..|...+..+. -...+.++|+.|+||||+|+.+++.. ....++...|-.- ......-...+.+
T Consensus 16 ~eivGQe~i~~~L~~~i~~~r-----i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~ 90 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDR-----VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDF 90 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHH
Confidence 469999999999988886542 23568899999999999999988764 3222211111100 0000000000000
Q ss_pred HHHhhc-----CCCCCCChhHHHHHHHHH----H-Hhc----Cc-----CHHHHHHhhcccCCCCCCcEEEE-EcCchHH
Q 039990 157 LESITR-----SSCGLTDLNSVQLKLKEA----V-FKK----NK-----SYELWQALKSPFMAGAPGSRIIV-TTRSMDV 216 (1217)
Q Consensus 157 ~~~l~~-----~~~~~~~~~~~~~~l~~~----l-~~~----~~-----~~~~~~~l~~~~~~~~~gs~ilv-TtR~~~v 216 (1217)
...-.. ........+++....... . .++ ++ .....+.+...+..-...+.+|+ |++...+
T Consensus 91 ~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kL 170 (620)
T PRK14954 91 DAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKI 170 (620)
T ss_pred hccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhh
Confidence 000000 000011122222111111 0 011 22 22335556555554444555544 5444444
Q ss_pred HHh-hCCCceEeccCCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhccCCc-hhHHHH
Q 039990 217 ALK-MGSGKNYELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGLP-LAARAL 277 (1217)
Q Consensus 217 ~~~-~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-Lai~~~ 277 (1217)
... ......+++.+++.++....+.+.+-..+ . .-..+.++.|++.++|.. .|+..+
T Consensus 171 l~TI~SRc~~vef~~l~~~ei~~~L~~i~~~eg-i---~I~~eal~~La~~s~Gdlr~al~eL 229 (620)
T PRK14954 171 PATIASRCQRFNFKRIPLDEIQSQLQMICRAEG-I---QIDADALQLIARKAQGSMRDAQSIL 229 (620)
T ss_pred hHHHHhhceEEecCCCCHHHHHHHHHHHHHHcC-C---CCCHHHHHHHHHHhCCCHHHHHHHH
Confidence 322 23456899999999998888777653211 1 112457888999999844 444443
No 140
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.76 E-value=0.025 Score=68.34 Aligned_cols=175 Identities=14% Similarity=0.100 Sum_probs=96.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhcc-ccCCCC--------------------C
Q 039990 79 PAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDK-LTDDFK--------------------P 137 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~-~~~~F~--------------------~ 137 (1217)
.++||.+..++.|..++.... -...+.++|..|+||||+|+.+++.. ...... .
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~-----i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~d 90 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGR-----VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSAVD 90 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCCCe
Confidence 479999999999988887542 23567899999999999999988763 111110 1
Q ss_pred eEEEEeCCcccHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhc---Cc-----CHHHHHHhhcccCCCCCCcEEEE
Q 039990 138 KAWVCVSDDFDILRISKAILESITRSSCGLTDLNSVQLKLKEAVFKK---NK-----SYELWQALKSPFMAGAPGSRIIV 209 (1217)
Q Consensus 138 ~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~---~~-----~~~~~~~l~~~~~~~~~gs~ilv 209 (1217)
++.+..+....+.+ .++|.+.+....... ..+ ++ ..+..+.+...+......+.+|+
T Consensus 91 ~~~i~~~~~~~vd~-ir~ii~~~~~~p~~~--------------~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il 155 (585)
T PRK14950 91 VIEMDAASHTSVDD-AREIIERVQFRPALA--------------RYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFIL 155 (585)
T ss_pred EEEEeccccCCHHH-HHHHHHHHhhCcccC--------------CeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEE
Confidence 12222211122221 122222222111000 000 11 12334455555544444566666
Q ss_pred EcCc-hHHHHhh-CCCceEeccCCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhccCCchhHHHH
Q 039990 210 TTRS-MDVALKM-GSGKNYELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGLPLAARAL 277 (1217)
Q Consensus 210 TtR~-~~v~~~~-~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 277 (1217)
+|.+ ..+.... .....++++.++.++....+.+.+...+ .. -..+.+..|++.++|.+-.+...
T Consensus 156 ~t~~~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~eg-l~---i~~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 156 ATTEVHKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEG-IN---LEPGALEAIARAATGSMRDAENL 221 (585)
T ss_pred EeCChhhhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcC-CC---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 5543 3333222 2335788999999998888887764322 11 12457889999999988655433
No 141
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.74 E-value=0.00052 Score=69.95 Aligned_cols=182 Identities=13% Similarity=0.056 Sum_probs=112.0
Q ss_pred CCccEEeecCCCCCc--ccccccccccCcceEeeccCCCccccccccCCCCcccEEEEcCCCCCc--cccccCCCCCCcc
Q 039990 932 VTLKCIQIEDCSNFK--VLTSECQLSVAVEELTIDSCSNIESIAERFHDDACLRSIRLSYCKNLK--SLPKGLNNLSHLH 1007 (1217)
Q Consensus 932 ~~L~~L~l~~~~~l~--~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~L~~c~~l~--~l~~~l~~l~~L~ 1007 (1217)
+.++.+++.+|.... .+...+.++|.|+.|+++.|+.-..+...-....+|++|.|.+.. +. .....+..+|.++
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~-L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTG-LSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCC-CChhhhhhhhhcchhhh
Confidence 456777777764432 344556789999999999865433332221346799999998833 32 2234567788888
Q ss_pred eEEecCCCCCcccCC-----CCCCCCcceEEEccCcCcccCCCC----CCCCCcceEeeccCCCcccc--CCCCCCCCCC
Q 039990 1008 RRSIQGCHNLVSLPE-----DALPSNVVDVSIEDCDKLKAPLPT----GKLSSLQLLTLIECPGIVFF--PEEGLSTNLT 1076 (1217)
Q Consensus 1008 ~L~l~~c~~l~~l~~-----~~~~~~L~~L~l~~~~~l~~~~~~----~~l~~L~~L~l~~c~~l~~~--~~~~~~~~L~ 1076 (1217)
.|.++.|+ +..+-. ....+.+.+|+..+|....- ... .-+|++..+.+..||.-..- ....-++.+-
T Consensus 150 elHmS~N~-~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w-~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~ 227 (418)
T KOG2982|consen 150 ELHMSDNS-LRQLNLDDNCIEDWSTEVLTLHQLPCLEQLW-LNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLS 227 (418)
T ss_pred hhhhccch-hhhhccccccccccchhhhhhhcCCcHHHHH-HHHHhHHhhcccchheeeecCcccchhhcccCCCCCcch
Confidence 88888853 333221 11224677777777753332 111 34678888888877632211 1113356666
Q ss_pred eEEecCCCCCccccccccccCCcccceeeccCCCcccccc
Q 039990 1077 DLEISGDNIYKPLVKWGFDKFSSLRKHCINRCSDAVSFPE 1116 (1217)
Q Consensus 1077 ~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 1116 (1217)
.|+++.+++-.-.+...+.++++|..|.+.+++....+..
T Consensus 228 ~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~ 267 (418)
T KOG2982|consen 228 CLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRG 267 (418)
T ss_pred hhhhcccccccHHHHHHHcCCchhheeeccCCcccccccC
Confidence 7777777665544444678888888888888877666654
No 142
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=96.73 E-value=0.025 Score=65.62 Aligned_cols=176 Identities=13% Similarity=0.123 Sum_probs=95.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhcc-ccC---------------------CCC
Q 039990 79 PAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDK-LTD---------------------DFK 136 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~-~~~---------------------~F~ 136 (1217)
.+++|.+..++.+...+.... -...+.++|..|+||||+|+.+++.. ... +++
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~-----i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d 91 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNR-----AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD 91 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc
Confidence 479999999999998887542 23577889999999999999987753 111 111
Q ss_pred CeEEEEeCCcccHHHHHHHHHHHhhcCCC-C------CCChhHHHHHHHHHHHhcCcCHHHHHHhhcccCCCCCCcEEEE
Q 039990 137 PKAWVCVSDDFDILRISKAILESITRSSC-G------LTDLNSVQLKLKEAVFKKNKSYELWQALKSPFMAGAPGSRIIV 209 (1217)
Q Consensus 137 ~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-~------~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~~gs~ilv 209 (1217)
.+++.......+.+ .+.+.+.+..... . .++.+.+ .....+.+...+.....+..+|+
T Consensus 92 -~~~i~g~~~~gid~-ir~i~~~l~~~~~~~~~kvvIIdead~l-------------t~~~~n~LLk~lEep~~~~~~Il 156 (451)
T PRK06305 92 -VLEIDGASHRGIED-IRQINETVLFTPSKSRYKIYIIDEVHML-------------TKEAFNSLLKTLEEPPQHVKFFL 156 (451)
T ss_pred -eEEeeccccCCHHH-HHHHHHHHHhhhhcCCCEEEEEecHHhh-------------CHHHHHHHHHHhhcCCCCceEEE
Confidence 22222211111221 1122222221100 0 0111111 11223444444444444666666
Q ss_pred EcCc-hHHHHhh-CCCceEeccCCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhccCCc-hhHHHHH
Q 039990 210 TTRS-MDVALKM-GSGKNYELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGLP-LAARALG 278 (1217)
Q Consensus 210 TtR~-~~v~~~~-~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-Lai~~~~ 278 (1217)
+|.. ..+.... .....+++.+++.++..+.+.+.+-..+ . .-..+.++.|++.++|.+ .|+..+-
T Consensus 157 ~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg-~---~i~~~al~~L~~~s~gdlr~a~~~Le 224 (451)
T PRK06305 157 ATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEG-I---ETSREALLPIARAAQGSLRDAESLYD 224 (451)
T ss_pred EeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcC-C---CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 5533 3222221 2335889999999998888877653211 1 112457888999999865 4444443
No 143
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.73 E-value=0.034 Score=65.99 Aligned_cols=179 Identities=12% Similarity=0.032 Sum_probs=99.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhcc-ccCCC---------------------C
Q 039990 79 PAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDK-LTDDF---------------------K 136 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~-~~~~F---------------------~ 136 (1217)
.++||.+..++.|..++..+. -...+.++|+.|+||||+|+.+++.. ..... .
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~ 87 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGR-----INHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSI 87 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCc
Confidence 479999999999999987642 23567899999999999999988763 21111 1
Q ss_pred CeEEEEeCCcccHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhc---Cc-----CHHHHHHhhcccCCCCCCcEEE
Q 039990 137 PKAWVCVSDDFDILRISKAILESITRSSCGLTDLNSVQLKLKEAVFKK---NK-----SYELWQALKSPFMAGAPGSRII 208 (1217)
Q Consensus 137 ~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~---~~-----~~~~~~~l~~~~~~~~~gs~il 208 (1217)
.++.+..+....+.++ ++|.+.+....... ..| ++ .....+.+...+........+|
T Consensus 88 dvieidaas~~gvd~i-Rel~~~~~~~P~~~--------------~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fI 152 (584)
T PRK14952 88 DVVELDAASHGGVDDT-RELRDRAFYAPAQS--------------RYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFI 152 (584)
T ss_pred eEEEeccccccCHHHH-HHHHHHHHhhhhcC--------------CceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEE
Confidence 1223322222112111 12222211100000 000 11 2245556655555444455555
Q ss_pred E-EcCchHHHHhh-CCCceEeccCCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhccCCc-hhHHHHHHHh
Q 039990 209 V-TTRSMDVALKM-GSGKNYELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGLP-LAARALGGLL 281 (1217)
Q Consensus 209 v-TtR~~~v~~~~-~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-Lai~~~~~~l 281 (1217)
+ ||....+.... .....++...++.++..+.+.+.+...+ . .-..+....|++..+|-+ -|+..+-.++
T Consensus 153 L~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~eg-i---~i~~~al~~Ia~~s~GdlR~aln~Ldql~ 224 (584)
T PRK14952 153 FATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEG-V---VVDDAVYPLVIRAGGGSPRDTLSVLDQLL 224 (584)
T ss_pred EEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcC-C---CCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 4 54444443222 2346899999999998888877653321 1 112446678889998866 4555554443
No 144
>PRK06620 hypothetical protein; Validated
Probab=96.72 E-value=0.045 Score=56.47 Aligned_cols=68 Identities=7% Similarity=-0.037 Sum_probs=44.3
Q ss_pred CCcEEEEEcCchH-------HHHhhCCCceEeccCCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhccCCchhH
Q 039990 203 PGSRIIVTTRSMD-------VALKMGSGKNYELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGLPLAA 274 (1217)
Q Consensus 203 ~gs~ilvTtR~~~-------v~~~~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 274 (1217)
.|..||+|++... ...++...-++++++++.++-..++.+.+... +.. -.+++.+-|++.+.|---.+
T Consensus 112 ~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~-~l~---l~~ev~~~L~~~~~~d~r~l 186 (214)
T PRK06620 112 KQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSIS-SVT---ISRQIIDFLLVNLPREYSKI 186 (214)
T ss_pred cCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHc-CCC---CCHHHHHHHHHHccCCHHHH
Confidence 4668999987533 23344455689999999999888888876421 111 12456777777776654433
No 145
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.71 E-value=0.0025 Score=70.12 Aligned_cols=55 Identities=15% Similarity=0.161 Sum_probs=45.8
Q ss_pred EEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCc--ccHHHHHHHHHHHhh
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDD--FDILRISKAILESIT 161 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~--~~~~~~~~~i~~~l~ 161 (1217)
..++|+|.+|.|||||++.+++.....+|+..+||.+.+. .++.++++.+...+-
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vv 225 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDERPEEVTDMQRSVKGEVV 225 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCCCccHHHHHHHhhceEE
Confidence 4789999999999999999998754447999999998866 789999999865443
No 146
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=96.71 E-value=0.0086 Score=63.98 Aligned_cols=78 Identities=21% Similarity=0.311 Sum_probs=65.7
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCcccHHHHHHHHH
Q 039990 78 EPAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDFDILRISKAIL 157 (1217)
Q Consensus 78 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 157 (1217)
++.|.+|+.++..+...+...++ .-+..|.|+|-.|.|||.+.+++++.. . -..+|+++-+.++.+.++..|+
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~---~~PS~~~iyG~sgTGKT~~~r~~l~~~-n---~~~vw~n~~ecft~~~lle~IL 77 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSC---TIPSIVHIYGHSGTGKTYLVRQLLRKL-N---LENVWLNCVECFTYAILLEKIL 77 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCc---ccceeEEEeccCCCchhHHHHHHHhhc-C---CcceeeehHHhccHHHHHHHHH
Confidence 46788999999999999877653 345677999999999999999999863 2 2358999999999999999999
Q ss_pred HHhhc
Q 039990 158 ESITR 162 (1217)
Q Consensus 158 ~~l~~ 162 (1217)
.+.+.
T Consensus 78 ~~~~~ 82 (438)
T KOG2543|consen 78 NKSQL 82 (438)
T ss_pred HHhcc
Confidence 99963
No 147
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.68 E-value=0.026 Score=64.50 Aligned_cols=171 Identities=13% Similarity=0.163 Sum_probs=93.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhcccc-------CCCCC-eEEEEeCCcccHH
Q 039990 79 PAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLT-------DDFKP-KAWVCVSDDFDIL 150 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-------~~F~~-~~wv~~~~~~~~~ 150 (1217)
.+++|.+...+.+...+... .-.+.+.++|++|+|||++|+.+.+.... ..|.. ++-+......+..
T Consensus 17 ~~iig~~~~~~~l~~~i~~~-----~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 91 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENN-----HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVD 91 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHH
Confidence 46899999999999988753 23468889999999999999998775321 11221 1112211222222
Q ss_pred HHHHHHHHHhhcCCC-C------CCChhHHHHHHHHHHHhcCcCHHHHHHhhcccCCCCCCcEEEEEc-CchHHHHh-hC
Q 039990 151 RISKAILESITRSSC-G------LTDLNSVQLKLKEAVFKKNKSYELWQALKSPFMAGAPGSRIIVTT-RSMDVALK-MG 221 (1217)
Q Consensus 151 ~~~~~i~~~l~~~~~-~------~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~~gs~ilvTt-R~~~v~~~-~~ 221 (1217)
...++++++..... . .++.+.+ ....++.+...+......+.+|++| +...+... ..
T Consensus 92 -~i~~l~~~~~~~p~~~~~kiviIDE~~~l-------------~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~s 157 (367)
T PRK14970 92 -DIRNLIDQVRIPPQTGKYKIYIIDEVHML-------------SSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILS 157 (367)
T ss_pred -HHHHHHHHHhhccccCCcEEEEEeChhhc-------------CHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHh
Confidence 22233333321111 0 0111111 1123444444343333345555554 33222211 12
Q ss_pred CCceEeccCCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhccCCch
Q 039990 222 SGKNYELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGLPL 272 (1217)
Q Consensus 222 ~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL 272 (1217)
....++.++++.++....+.+.+...+ . .-..+.++.+++.++|-+-
T Consensus 158 r~~~v~~~~~~~~~l~~~l~~~~~~~g-~---~i~~~al~~l~~~~~gdlr 204 (367)
T PRK14970 158 RCQIFDFKRITIKDIKEHLAGIAVKEG-I---KFEDDALHIIAQKADGALR 204 (367)
T ss_pred cceeEecCCccHHHHHHHHHHHHHHcC-C---CCCHHHHHHHHHhCCCCHH
Confidence 335789999999999888888764322 1 1124578888889988554
No 148
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.65 E-value=0.037 Score=64.70 Aligned_cols=174 Identities=14% Similarity=0.107 Sum_probs=94.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhcc-cc-------------------CCCCCe
Q 039990 79 PAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDK-LT-------------------DDFKPK 138 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~-~~-------------------~~F~~~ 138 (1217)
.+++|.+.....+...+.... -...+.++|..|+||||+|+.++... .. ..|...
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~-----i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~ 90 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQR-----VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDL 90 (486)
T ss_pred HHccChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcE
Confidence 468999999999999887642 23567789999999999999987652 10 112233
Q ss_pred EEEEeCCcccHHHHHHHHHHHhhcCCCC-------CCChhHHHHHHHHHHHhcCcCHHHHHHhhcccCCCCCCcEEEE-E
Q 039990 139 AWVCVSDDFDILRISKAILESITRSSCG-------LTDLNSVQLKLKEAVFKKNKSYELWQALKSPFMAGAPGSRIIV-T 210 (1217)
Q Consensus 139 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~~gs~ilv-T 210 (1217)
+++..+....+.+ .+.|.+.+...... .++.+.+ .....+.+...+........+|+ |
T Consensus 91 ~eidaas~~gvd~-ir~I~~~~~~~P~~~~~KVvIIDEad~L-------------t~~a~naLLk~LEepp~~~v~Il~t 156 (486)
T PRK14953 91 IEIDAASNRGIDD-IRALRDAVSYTPIKGKYKVYIIDEAHML-------------TKEAFNALLKTLEEPPPRTIFILCT 156 (486)
T ss_pred EEEeCccCCCHHH-HHHHHHHHHhCcccCCeeEEEEEChhhc-------------CHHHHHHHHHHHhcCCCCeEEEEEE
Confidence 4443322222221 12222222211100 0011111 12233444444443333444544 4
Q ss_pred cCchHHHHhh-CCCceEeccCCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhccCCchhHH
Q 039990 211 TRSMDVALKM-GSGKNYELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGLPLAAR 275 (1217)
Q Consensus 211 tR~~~v~~~~-~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 275 (1217)
|+...+.... .....+++.+++.++....+.+.+-..+ . .-..+.+..|++.++|.+-.+.
T Consensus 157 t~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~eg-i---~id~~al~~La~~s~G~lr~al 218 (486)
T PRK14953 157 TEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEK-I---EYEEKALDLLAQASEGGMRDAA 218 (486)
T ss_pred CCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcC-C---CCCHHHHHHHHHHcCCCHHHHH
Confidence 4443333222 2335789999999998888887663322 1 1124567888899998665443
No 149
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.65 E-value=0.021 Score=72.10 Aligned_cols=45 Identities=24% Similarity=0.459 Sum_probs=38.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 79 PAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
..++||+++++++++.|..... .-+.++|.+|+|||++|..++..
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~~------~n~lL~G~pGvGKTal~~~la~~ 223 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRTK------NNPILIGEPGVGKTAIAEGLAQR 223 (821)
T ss_pred CCCCCcHHHHHHHHHHHccccc------CCeEEECCCCCCHHHHHHHHHHH
Confidence 4589999999999999976532 24569999999999999998876
No 150
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.63 E-value=0.002 Score=70.27 Aligned_cols=52 Identities=17% Similarity=0.243 Sum_probs=42.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhcc
Q 039990 79 PAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDK 130 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 130 (1217)
.+++|.++.++++++++.....+....-++++++|++|.||||||..+.+..
T Consensus 51 ~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 51 HDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred hhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3799999999999999976543221345889999999999999999998763
No 151
>CHL00181 cbbX CbbX; Provisional
Probab=96.63 E-value=0.12 Score=56.19 Aligned_cols=53 Identities=6% Similarity=-0.053 Sum_probs=33.1
Q ss_pred hhcccCCCCCCcEEEEEcCchHHHHhh--------CCCceEeccCCChHHHHHHHHHHHhC
Q 039990 194 LKSPFMAGAPGSRIIVTTRSMDVALKM--------GSGKNYELKHLSDDDCWSVFLNHAFE 246 (1217)
Q Consensus 194 l~~~~~~~~~gs~ilvTtR~~~v~~~~--------~~~~~~~l~~l~~~~~~~lf~~~~~~ 246 (1217)
+...+.....+.+||.++......... .....++.++++.+|..+++...+-.
T Consensus 151 L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~ 211 (287)
T CHL00181 151 LLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEE 211 (287)
T ss_pred HHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHH
Confidence 333333334556777777643332111 22458899999999999998888743
No 152
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.59 E-value=0.026 Score=67.94 Aligned_cols=173 Identities=12% Similarity=0.070 Sum_probs=93.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhccccCCCC----------------------
Q 039990 79 PAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDFK---------------------- 136 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~---------------------- 136 (1217)
.+++|.+...+.|..++.... -...+.++|..|+||||+|+.+++.......+
T Consensus 16 ~~liGq~~i~~~L~~~l~~~r-----l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~h~ 90 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNR-----IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGNAL 90 (620)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCCCc
Confidence 468999999999988887642 22467899999999999999988764211111
Q ss_pred CeEEEEeCCcccHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhc---Cc-----CHHHHHHhhcccCCCCCCcEEE
Q 039990 137 PKAWVCVSDDFDILRISKAILESITRSSCGLTDLNSVQLKLKEAVFKK---NK-----SYELWQALKSPFMAGAPGSRII 208 (1217)
Q Consensus 137 ~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~---~~-----~~~~~~~l~~~~~~~~~gs~il 208 (1217)
.++.+.......+. -.+++.+.+....... ..+ ++ ..+.++.+...+..-.....+|
T Consensus 91 D~~ei~~~~~~~vd-~IReii~~a~~~p~~~--------------~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfI 155 (620)
T PRK14948 91 DVIEIDAASNTGVD-NIRELIERAQFAPVQA--------------RWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFV 155 (620)
T ss_pred cEEEEeccccCCHH-HHHHHHHHHhhChhcC--------------CceEEEEECccccCHHHHHHHHHHHhcCCcCeEEE
Confidence 11112111111111 1122222221110000 000 11 2244555655555433445444
Q ss_pred E-EcCchHHHHhh-CCCceEeccCCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhccCCchhHH
Q 039990 209 V-TTRSMDVALKM-GSGKNYELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGLPLAAR 275 (1217)
Q Consensus 209 v-TtR~~~v~~~~-~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 275 (1217)
+ |+....+.... .....+++..++.++....+.+.+...+ . .-..+.+..|++.++|.+..+.
T Consensus 156 L~t~~~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~keg-i---~is~~al~~La~~s~G~lr~A~ 220 (620)
T PRK14948 156 LATTDPQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKES-I---EIEPEALTLVAQRSQGGLRDAE 220 (620)
T ss_pred EEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhC-C---CCCHHHHHHHHHHcCCCHHHHH
Confidence 4 44333333222 2335788889999988888777653321 1 1113567889999998775443
No 153
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.58 E-value=0.017 Score=70.96 Aligned_cols=45 Identities=24% Similarity=0.418 Sum_probs=37.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 79 PAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
..++||++++.++++.|..... .-+.++|.+|+|||++|+.+++.
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~~------~n~LLvGppGvGKT~lae~la~~ 230 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRRK------NNPLLVGESGVGKTAIAEGLAWR 230 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccCC------CCeEEECCCCCCHHHHHHHHHHH
Confidence 4699999999999999877432 23468999999999999998875
No 154
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=96.56 E-value=0.073 Score=58.49 Aligned_cols=187 Identities=14% Similarity=0.088 Sum_probs=99.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhcc-cc-------------CCCCCeEEEEeC
Q 039990 79 PAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDK-LT-------------DDFKPKAWVCVS 144 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~-~~-------------~~F~~~~wv~~~ 144 (1217)
.+++|.++..+.+.+.+..+. -.....++|..|+||+++|..+++.. .. ..++...|+.-.
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r-----l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~ 78 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR-----IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPT 78 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecc
Confidence 468999999999999887642 23688999999999999999887653 21 223445666421
Q ss_pred CcccHHHHHHHHHHHhhc--CCCCCCChhHHHHHHHHHHHhc----------Cc-----CHHHHHHhhcccCCCCCCcEE
Q 039990 145 DDFDILRISKAILESITR--SSCGLTDLNSVQLKLKEAVFKK----------NK-----SYELWQALKSPFMAGAPGSRI 207 (1217)
Q Consensus 145 ~~~~~~~~~~~i~~~l~~--~~~~~~~~~~~~~~l~~~l~~~----------~~-----~~~~~~~l~~~~~~~~~gs~i 207 (1217)
...+-..+-...++..+. .....-..++. +.+.+.+..+ ++ +....+.+...+..-+...-|
T Consensus 79 ~~~~g~~~~~~~~~~~~~~~~~~~~I~id~i-r~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fI 157 (314)
T PRK07399 79 YQHQGKLITASEAEEAGLKRKAPPQIRLEQI-REIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNGTLI 157 (314)
T ss_pred ccccccccchhhhhhccccccccccCcHHHH-HHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeEE
Confidence 110000000011111110 00011112222 2223332222 22 223344454444332333334
Q ss_pred EEEcCchHHHHhh-CCCceEeccCCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhccCCchhHHHHH
Q 039990 208 IVTTRSMDVALKM-GSGKNYELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGLPLAARALG 278 (1217)
Q Consensus 208 lvTtR~~~v~~~~-~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~ 278 (1217)
++|++...+.... .....+++.+++.++..+.+.+..... ........++..++|-|..+....
T Consensus 158 Li~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~-------~~~~~~~~l~~~a~Gs~~~al~~l 222 (314)
T PRK07399 158 LIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEE-------ILNINFPELLALAQGSPGAAIANI 222 (314)
T ss_pred EEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccc-------cchhHHHHHHHHcCCCHHHHHHHH
Confidence 4444443333322 334689999999999999998864211 001113678899999997665433
No 155
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.56 E-value=0.0096 Score=63.16 Aligned_cols=178 Identities=17% Similarity=0.163 Sum_probs=95.6
Q ss_pred ccccchhhHHHHHHHHhcCCCC-------CCCCcEEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCcc-----
Q 039990 80 AVYGRNEDKARILDMVLKNDPS-------DAANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDF----- 147 (1217)
Q Consensus 80 ~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~~----- 147 (1217)
++=|-++.+++|.+...-.-.. +-+.++=|.+||++|.|||-||++|+++ ....| +.+....
T Consensus 152 dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~-T~AtF-----IrvvgSElVqKY 225 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQ-TDATF-----IRVVGSELVQKY 225 (406)
T ss_pred hccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhc-cCceE-----EEeccHHHHHHH
Confidence 4567788888888876432111 0144677889999999999999999987 33333 3332211
Q ss_pred --cHHHHHHHHHHHhhcCCCC------------------CCChhHHHHHHHHHHHhcCcCHHHHHHhhcccCCC--CCCc
Q 039990 148 --DILRISKAILESITRSSCG------------------LTDLNSVQLKLKEAVFKKNKSYELWQALKSPFMAG--APGS 205 (1217)
Q Consensus 148 --~~~~~~~~i~~~l~~~~~~------------------~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~--~~gs 205 (1217)
.-..+.+++.+......+. .....+.++.+.+ +...+..+ ....
T Consensus 226 iGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmle--------------LL~qlDGFD~~~nv 291 (406)
T COG1222 226 IGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLE--------------LLNQLDGFDPRGNV 291 (406)
T ss_pred hccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHH--------------HHHhccCCCCCCCe
Confidence 1122333333322221110 0111122222222 22222222 2467
Q ss_pred EEEEEcCchHHHHh--h---CCCceEeccCCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhccCCc----hhHHH
Q 039990 206 RIIVTTRSMDVALK--M---GSGKNYELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGLP----LAARA 276 (1217)
Q Consensus 206 ~ilvTtR~~~v~~~--~---~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P----Lai~~ 276 (1217)
|||..|-..+.... + .-++.++++.-+.+.-.++|+-++-.- ....+-+ .+.+++.+.|.- -|+.+
T Consensus 292 KVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM-~l~~dvd----~e~la~~~~g~sGAdlkaict 366 (406)
T COG1222 292 KVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKM-NLADDVD----LELLARLTEGFSGADLKAICT 366 (406)
T ss_pred EEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhc-cCccCcC----HHHHHHhcCCCchHHHHHHHH
Confidence 88888876554322 1 235788998777777778888876432 2222222 456666776664 45555
Q ss_pred HHHHhh
Q 039990 277 LGGLLR 282 (1217)
Q Consensus 277 ~~~~l~ 282 (1217)
=|++++
T Consensus 367 EAGm~A 372 (406)
T COG1222 367 EAGMFA 372 (406)
T ss_pred HHhHHH
Confidence 666654
No 156
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.56 E-value=0.023 Score=68.42 Aligned_cols=175 Identities=13% Similarity=0.080 Sum_probs=98.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhcc-cc---------------------CCCC
Q 039990 79 PAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDK-LT---------------------DDFK 136 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~-~~---------------------~~F~ 136 (1217)
.+++|.+...+.|...+.... -...+.++|..|+||||+|+.+.+.. .. .+|+
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~-----l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n 91 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNK-----LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN 91 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc
Confidence 469999999999999987642 23578899999999999998877653 11 1222
Q ss_pred CeEEEEeCCcccHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhc--CcCHHHHHHhhcccCCCCCCcEEEE-EcCc
Q 039990 137 PKAWVCVSDDFDILRISKAILESITRSSCGLTDLNSVQLKLKEAVFKK--NKSYELWQALKSPFMAGAPGSRIIV-TTRS 213 (1217)
Q Consensus 137 ~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~~~~~l~~~~~~~~~gs~ilv-TtR~ 213 (1217)
+..+..+....+.++. ++++++......... +-.+.+. .-+.+.++.+...+..-..++.+|+ ||+.
T Consensus 92 -~~~ld~~~~~~vd~Ir-~li~~~~~~P~~~~~--------KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~ 161 (614)
T PRK14971 92 -IHELDAASNNSVDDIR-NLIEQVRIPPQIGKY--------KIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEK 161 (614)
T ss_pred -eEEecccccCCHHHHH-HHHHHHhhCcccCCc--------EEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCc
Confidence 2233333222222222 233333211110000 0000000 1123456666666555445566554 5454
Q ss_pred hHHHHhh-CCCceEeccCCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhccCCch
Q 039990 214 MDVALKM-GSGKNYELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGLPL 272 (1217)
Q Consensus 214 ~~v~~~~-~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL 272 (1217)
..+.... ....++++.+++.++....+.+.+-..+ . .-..+.+..|++.++|-.-
T Consensus 162 ~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~eg-i---~i~~~al~~La~~s~gdlr 217 (614)
T PRK14971 162 HKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEG-I---TAEPEALNVIAQKADGGMR 217 (614)
T ss_pred hhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcC-C---CCCHHHHHHHHHHcCCCHH
Confidence 4444332 3346899999999999888887663321 1 1123567889999998553
No 157
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=96.55 E-value=0.029 Score=65.42 Aligned_cols=173 Identities=11% Similarity=0.086 Sum_probs=96.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhccc-cCC------------------C-CCe
Q 039990 79 PAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKL-TDD------------------F-KPK 138 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~-~~~------------------F-~~~ 138 (1217)
.++||-+...+.+...+... .-..+..++|..|+||||+|+.+++... ... + ..+
T Consensus 14 deiiGqe~v~~~L~~~I~~g-----rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv 88 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNN-----RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDI 88 (535)
T ss_pred HHccCcHHHHHHHHHHHHcC-----CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeE
Confidence 46999999999998888654 2335778999999999999998876531 111 1 112
Q ss_pred EEEEeCCcccHHHHHHHHHHHhhcCCC-C------CCChhHHHHHHHHHHHhcCcCHHHHHHhhcccCCCCCCcEEEEEc
Q 039990 139 AWVCVSDDFDILRISKAILESITRSSC-G------LTDLNSVQLKLKEAVFKKNKSYELWQALKSPFMAGAPGSRIIVTT 211 (1217)
Q Consensus 139 ~wv~~~~~~~~~~~~~~i~~~l~~~~~-~------~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~~gs~ilvTt 211 (1217)
+++..+....+.++. ++++....... . .++.+ .-..+..+.+...+......+++|++|
T Consensus 89 ~eldaas~~gId~IR-elie~~~~~P~~~~~KVvIIDEad-------------~Lt~~A~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 89 IEMDAASNRGIDDIR-ELIEQTKYKPSMARFKIFIIDEVH-------------MLTKEAFNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred EEeccccccCHHHHH-HHHHHHhhCcccCCeEEEEEECcc-------------cCCHHHHHHHHHHHhhcCCceEEEEEE
Confidence 333322222222222 22222211100 0 00000 112234444544444444566666666
Q ss_pred Cch-HHHHh-hCCCceEeccCCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhccCCchhH
Q 039990 212 RSM-DVALK-MGSGKNYELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGLPLAA 274 (1217)
Q Consensus 212 R~~-~v~~~-~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 274 (1217)
.+. .+... ......+++.+++.++..+.+.+.+-..+ . .-.++.++.|++.++|-+--+
T Consensus 155 td~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EG-i---~i~~~Al~~Ia~~s~GdlR~a 215 (535)
T PRK08451 155 TDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEG-V---SYEPEALEILARSGNGSLRDT 215 (535)
T ss_pred CChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcC-C---CCCHHHHHHHHHHcCCcHHHH
Confidence 553 22111 12236889999999998888877653321 1 112457888999999987443
No 158
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.50 E-value=0.087 Score=58.25 Aligned_cols=165 Identities=15% Similarity=0.121 Sum_probs=99.6
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhccccCCCC--CeEEEEeCCcccHHHHHHH
Q 039990 78 EPAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDFK--PKAWVCVSDDFDILRISKA 155 (1217)
Q Consensus 78 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~--~~~wv~~~~~~~~~~~~~~ 155 (1217)
+...+||+.|.+.+.+++...-.. ....-+-|.|-+|.|||.+...++.+. ..... .++++....--...+++..
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hle~--~t~gSlYVsG~PGtgkt~~l~rvl~~~-~~~~~~~~~v~inc~sl~~~~aiF~k 225 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHLEL--NTSGSLYVSGQPGTGKTALLSRVLDSL-SKSSKSPVTVYINCTSLTEASAIFKK 225 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhhhc--ccCcceEeeCCCCcchHHHHHHHHHhh-hhhcccceeEEEeeccccchHHHHHH
Confidence 457999999999999998764322 445678899999999999999999873 32222 3466665554567778888
Q ss_pred HHHHhhcCCCCCCChhHHHHHHHHHHHhc----CcCHHHHHHhh--------cccC-CCCCCcEEEEEcCch--H----H
Q 039990 156 ILESITRSSCGLTDLNSVQLKLKEAVFKK----NKSYELWQALK--------SPFM-AGAPGSRIIVTTRSM--D----V 216 (1217)
Q Consensus 156 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~----~~~~~~~~~l~--------~~~~-~~~~gs~ilvTtR~~--~----v 216 (1217)
|...+...........+....+.+...+. +...++.|.+. ..|. +.-+++|+|+.--.. + .
T Consensus 226 I~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~ 305 (529)
T KOG2227|consen 226 IFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRF 305 (529)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHH
Confidence 88777322222222244445555554444 22223333332 1222 223566655532211 1 1
Q ss_pred HHhhC-----CCceEeccCCChHHHHHHHHHHHh
Q 039990 217 ALKMG-----SGKNYELKHLSDDDCWSVFLNHAF 245 (1217)
Q Consensus 217 ~~~~~-----~~~~~~l~~l~~~~~~~lf~~~~~ 245 (1217)
...+. ....+.-++.+.++-.++|..+.-
T Consensus 306 LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~ 339 (529)
T KOG2227|consen 306 LPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLS 339 (529)
T ss_pred hhhhhhccCCCCceeeecCCCHHHHHHHHHHHHh
Confidence 11111 235778899999999999999873
No 159
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.44 E-value=0.00035 Score=62.69 Aligned_cols=81 Identities=20% Similarity=0.214 Sum_probs=43.0
Q ss_pred cCCCCcceEEEcCCCCcccccccccccccChhhhcccccCcEEecccccccccccccccccccccEEeecCCccccccCC
Q 039990 478 LPKCKKLRVLSLEKDNIAEVPISIGCLKCLPEAITSLFNLEILILSYCWCLLKLPSSIGNLVNLHHLDIEGADRLCELPL 557 (1217)
Q Consensus 478 ~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~ 557 (1217)
+.+...|...+|++|.++.+|.. --.+..-+.+|+|++| .+..+|.++..++.|+.|+++.| .+...|.
T Consensus 49 l~~~~el~~i~ls~N~fk~fp~k---------ft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lNl~~N-~l~~~p~ 117 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNGFKKFPKK---------FTIKFPTATTLNLANN-EISDVPEELAAMPALRSLNLRFN-PLNAEPR 117 (177)
T ss_pred HhCCceEEEEecccchhhhCCHH---------Hhhccchhhhhhcchh-hhhhchHHHhhhHHhhhcccccC-ccccchH
Confidence 44445555556666665554421 1222335556666655 55666665656666666666655 4555555
Q ss_pred CCccCccccccc
Q 039990 558 GMKELKCLRTLT 569 (1217)
Q Consensus 558 ~i~~L~~L~~L~ 569 (1217)
-|..|.+|..|+
T Consensus 118 vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 118 VIAPLIKLDMLD 129 (177)
T ss_pred HHHHHHhHHHhc
Confidence 555555555444
No 160
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.44 E-value=0.034 Score=70.44 Aligned_cols=45 Identities=24% Similarity=0.454 Sum_probs=37.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 79 PAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
..+|||++++.++++.|..... .-+.++|.+|+|||++|..++++
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~~------~n~lL~G~pGvGKT~l~~~la~~ 217 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRTK------NNPVLIGEPGVGKTAIVEGLAQR 217 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCCC------CceEEEcCCCCCHHHHHHHHHHH
Confidence 4599999999999999976432 34558999999999999998876
No 161
>PRK07261 topology modulation protein; Provisional
Probab=96.42 E-value=0.0052 Score=61.05 Aligned_cols=33 Identities=24% Similarity=0.406 Sum_probs=24.3
Q ss_pred EEEEEccCCchHHHHHHHHHhcc-c-cCCCCCeEE
Q 039990 108 VIPLVGMGGIGKTTLAQEVYNDK-L-TDDFKPKAW 140 (1217)
Q Consensus 108 vv~I~G~gGiGKTtLA~~v~~~~-~-~~~F~~~~w 140 (1217)
.|.|+|++|+||||||+++.... . .-+.|...|
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~ 36 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHF 36 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEe
Confidence 58899999999999999988652 1 123455555
No 162
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.41 E-value=0.087 Score=61.14 Aligned_cols=150 Identities=13% Similarity=0.096 Sum_probs=80.2
Q ss_pred EEEEEEccCCchHHHHHHHHHhccccCCCC-CeEEEEeCCcccHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhc-
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDKLTDDFK-PKAWVCVSDDFDILRISKAILESITRSSCGLTDLNSVQLKLKEAVFKK- 184 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~- 184 (1217)
..+.|+|.+|+|||+||+++++...+.... .++|++. .++..++...+... ..++.....+. .-.
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~-----~~~~f~~~~~~--~~dv 197 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS------EKFLNDLVDSMKEG-----KLNEFREKYRK--KVDV 197 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH------HHHHHHHHHHHhcc-----cHHHHHHHHHh--cCCE
Confidence 458999999999999999999873222233 3556653 33444454444321 11222111110 001
Q ss_pred --CcCHH------HH-HHhhcccCC-CCCCcEEEEEcC-chHH--------HHhhCCCceEeccCCChHHHHHHHHHHHh
Q 039990 185 --NKSYE------LW-QALKSPFMA-GAPGSRIIVTTR-SMDV--------ALKMGSGKNYELKHLSDDDCWSVFLNHAF 245 (1217)
Q Consensus 185 --~~~~~------~~-~~l~~~~~~-~~~gs~ilvTtR-~~~v--------~~~~~~~~~~~l~~l~~~~~~~lf~~~~~ 245 (1217)
.|+.+ .+ +.+...+.. ...|..||+||. .+.- ..++....++++++.+.++-.+++.+.+.
T Consensus 198 LlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~ 277 (440)
T PRK14088 198 LLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLE 277 (440)
T ss_pred EEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHH
Confidence 11111 11 122221111 112456888885 3221 12233445889999999999999998874
Q ss_pred CCCCCCCCCchhhHHHHHHHhccCCchh
Q 039990 246 EGIDTGTQGNFESTRQRVVAKCKGLPLA 273 (1217)
Q Consensus 246 ~~~~~~~~~~~~~~~~~i~~~~~g~PLa 273 (1217)
... .. -.+++...|++.+.|.--.
T Consensus 278 ~~~-~~---l~~ev~~~Ia~~~~~~~R~ 301 (440)
T PRK14088 278 IEH-GE---LPEEVLNFVAENVDDNLRR 301 (440)
T ss_pred hcC-CC---CCHHHHHHHHhccccCHHH
Confidence 321 11 1245778888887765433
No 163
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.38 E-value=0.072 Score=61.58 Aligned_cols=144 Identities=15% Similarity=0.151 Sum_probs=74.4
Q ss_pred cEEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCcccHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhc-
Q 039990 106 FRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDFDILRISKAILESITRSSCGLTDLNSVQLKLKEAVFKK- 184 (1217)
Q Consensus 106 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~- 184 (1217)
...+.|+|..|+|||+||+++++.. ...-..+++++. .++...+...+... ..+ .++......
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l-~~~~~~v~yi~~------~~f~~~~~~~l~~~-----~~~----~f~~~~~~~d 204 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHAL-RESGGKILYVRS------ELFTEHLVSAIRSG-----EMQ----RFRQFYRNVD 204 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHH-HHcCCCEEEeeH------HHHHHHHHHHHhcc-----hHH----HHHHHcccCC
Confidence 3568899999999999999999873 222233455542 22333344333211 011 111111111
Q ss_pred ---CcCH------H-HHHHhhcccCC-CCCCcEEEEEcCch---------HHHHhhCCCceEeccCCChHHHHHHHHHHH
Q 039990 185 ---NKSY------E-LWQALKSPFMA-GAPGSRIIVTTRSM---------DVALKMGSGKNYELKHLSDDDCWSVFLNHA 244 (1217)
Q Consensus 185 ---~~~~------~-~~~~l~~~~~~-~~~gs~ilvTtR~~---------~v~~~~~~~~~~~l~~l~~~~~~~lf~~~~ 244 (1217)
.|+. . ..+.+...+.. ...|..||+||... .+..++..+..+++++++.++-..++.+++
T Consensus 205 vLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~ 284 (445)
T PRK12422 205 ALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKA 284 (445)
T ss_pred EEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHH
Confidence 1111 0 01112211110 01345688888542 122333445688999999999999999887
Q ss_pred hCCCCCCCCCchhhHHHHHHHhccC
Q 039990 245 FEGIDTGTQGNFESTRQRVVAKCKG 269 (1217)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~i~~~~~g 269 (1217)
-... .. -.+++..-|++.+.|
T Consensus 285 ~~~~-~~---l~~evl~~la~~~~~ 305 (445)
T PRK12422 285 EALS-IR---IEETALDFLIEALSS 305 (445)
T ss_pred HHcC-CC---CCHHHHHHHHHhcCC
Confidence 4322 11 123455556666553
No 164
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=96.37 E-value=0.065 Score=63.76 Aligned_cols=173 Identities=13% Similarity=0.127 Sum_probs=97.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhcc-ccCCC---C----------------Ce
Q 039990 79 PAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDK-LTDDF---K----------------PK 138 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~-~~~~F---~----------------~~ 138 (1217)
.+++|-+..++.+...+.... -...+.++|..|+||||+|+.+++.. ..... + .+
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~-----i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~dv 90 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNK-----IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLDV 90 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCCe
Confidence 479999999999999987642 33578899999999999999988764 22111 1 12
Q ss_pred EEEEeCCcccHHHHHHHHHHHhhcCCCC-------CCChhHHHHHHHHHHHhcCcCHHHHHHhhcccCCCCCCcEEEEEc
Q 039990 139 AWVCVSDDFDILRISKAILESITRSSCG-------LTDLNSVQLKLKEAVFKKNKSYELWQALKSPFMAGAPGSRIIVTT 211 (1217)
Q Consensus 139 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~~gs~ilvTt 211 (1217)
+++.......+.++. ++.+.+...... .++.+ ......++.+...+......+.+|.+|
T Consensus 91 ~~idgas~~~vddIr-~l~e~~~~~p~~~~~KVvIIDEa~-------------~Ls~~a~naLLK~LEepp~~~vfI~~t 156 (563)
T PRK06647 91 IEIDGASNTSVQDVR-QIKEEIMFPPASSRYRVYIIDEVH-------------MLSNSAFNALLKTIEEPPPYIVFIFAT 156 (563)
T ss_pred EEecCcccCCHHHHH-HHHHHHHhchhcCCCEEEEEEChh-------------hcCHHHHHHHHHhhccCCCCEEEEEec
Confidence 233222222222221 222221111000 00101 112334556666555444566666555
Q ss_pred Cc-hHHHHhh-CCCceEeccCCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhccCCchhH
Q 039990 212 RS-MDVALKM-GSGKNYELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGLPLAA 274 (1217)
Q Consensus 212 R~-~~v~~~~-~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 274 (1217)
.. ..+.... .....++..+++.++..+.+.+.+...+ . .-.++.+..|++.++|-+-.+
T Consensus 157 te~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~eg-i---~id~eAl~lLa~~s~GdlR~a 217 (563)
T PRK06647 157 TEVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQ-I---KYEDEALKWIAYKSTGSVRDA 217 (563)
T ss_pred CChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcC-C---CCCHHHHHHHHHHcCCCHHHH
Confidence 43 3333222 2335789999999998888887764322 1 122456788899999876433
No 165
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.36 E-value=0.036 Score=66.53 Aligned_cols=178 Identities=12% Similarity=0.119 Sum_probs=96.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhcc-ccCCC-------------------CCe
Q 039990 79 PAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDK-LTDDF-------------------KPK 138 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~-~~~~F-------------------~~~ 138 (1217)
.++||.+.....|...+.... -...+.++|..|+||||+|+.+++.. ..+.. ..+
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~ 90 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGR-----VAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDV 90 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCe
Confidence 479999999999998887542 23577899999999999999988763 22111 111
Q ss_pred EEEEeCCcccHHHHHHHHHHHhhcCCCC-------CCChhHHHHHHHHHHHhcCcCHHHHHHhhcccCCCCCCcEEEE-E
Q 039990 139 AWVCVSDDFDILRISKAILESITRSSCG-------LTDLNSVQLKLKEAVFKKNKSYELWQALKSPFMAGAPGSRIIV-T 210 (1217)
Q Consensus 139 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~~gs~ilv-T 210 (1217)
+.+.......+.+ .+++.+.+...... .++.+. -+....+.+...+......+.+|+ |
T Consensus 91 ~eid~~s~~~v~~-ir~l~~~~~~~p~~~~~KVvIIdev~~-------------Lt~~a~naLLk~LEepp~~~~fIl~t 156 (576)
T PRK14965 91 FEIDGASNTGVDD-IRELRENVKYLPSRSRYKIFIIDEVHM-------------LSTNAFNALLKTLEEPPPHVKFIFAT 156 (576)
T ss_pred eeeeccCccCHHH-HHHHHHHHHhccccCCceEEEEEChhh-------------CCHHHHHHHHHHHHcCCCCeEEEEEe
Confidence 2222222222222 12233322211100 000010 112334455544443334555554 5
Q ss_pred cCchHHHHhh-CCCceEeccCCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhccCCc-hhHHHHHH
Q 039990 211 TRSMDVALKM-GSGKNYELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGLP-LAARALGG 279 (1217)
Q Consensus 211 tR~~~v~~~~-~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-Lai~~~~~ 279 (1217)
|....+.... .....++..+++.++....+...+-..+ . .-..+.+..|++.++|-. .|+..+-.
T Consensus 157 ~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~eg-i---~i~~~al~~la~~a~G~lr~al~~Ldq 223 (576)
T PRK14965 157 TEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEG-I---SISDAALALVARKGDGSMRDSLSTLDQ 223 (576)
T ss_pred CChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhC-C---CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 5444444322 2335788999999988887776553221 1 112456778889998854 55554433
No 166
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.31 E-value=0.0028 Score=59.20 Aligned_cols=22 Identities=45% Similarity=0.599 Sum_probs=20.5
Q ss_pred EEEEEccCCchHHHHHHHHHhc
Q 039990 108 VIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 108 vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
+|+|.|++|+||||+|+++.+.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999876
No 167
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.30 E-value=0.086 Score=61.89 Aligned_cols=149 Identities=12% Similarity=0.140 Sum_probs=80.7
Q ss_pred cEEEEEEccCCchHHHHHHHHHhccccCCCC--CeEEEEeCCcccHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHh
Q 039990 106 FRVIPLVGMGGIGKTTLAQEVYNDKLTDDFK--PKAWVCVSDDFDILRISKAILESITRSSCGLTDLNSVQLKLKEAVFK 183 (1217)
Q Consensus 106 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 183 (1217)
...+.|+|.+|+|||+||+++++. ....++ .+++++.. ++..++...+... ..+... +.+..
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~-~~~~~~~~~v~yi~~~------~~~~~~~~~~~~~-----~~~~~~----~~~~~ 211 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNY-ILEKNPNAKVVYVTSE------KFTNDFVNALRNN-----TMEEFK----EKYRS 211 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH-HHHhCCCCeEEEEEHH------HHHHHHHHHHHcC-----cHHHHH----HHHhc
Confidence 356889999999999999999987 444443 24455432 2233333333211 111111 11111
Q ss_pred c----CcCH------HHH-HHhhcccCC-CCCCcEEEEEcCchH---------HHHhhCCCceEeccCCChHHHHHHHHH
Q 039990 184 K----NKSY------ELW-QALKSPFMA-GAPGSRIIVTTRSMD---------VALKMGSGKNYELKHLSDDDCWSVFLN 242 (1217)
Q Consensus 184 ~----~~~~------~~~-~~l~~~~~~-~~~gs~ilvTtR~~~---------v~~~~~~~~~~~l~~l~~~~~~~lf~~ 242 (1217)
- +|+. +.+ +.+...+.. ...|..||+||.... +..++....++++++.+.++-.+++.+
T Consensus 212 ~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~ 291 (450)
T PRK00149 212 VDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKK 291 (450)
T ss_pred CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHH
Confidence 1 1111 111 112211110 012445888886532 123334446899999999999999999
Q ss_pred HHhCCCCCCCCCchhhHHHHHHHhccCCchhH
Q 039990 243 HAFEGIDTGTQGNFESTRQRVVAKCKGLPLAA 274 (1217)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 274 (1217)
.+.... . .-.+++.+.|++.++|..-.+
T Consensus 292 ~~~~~~-~---~l~~e~l~~ia~~~~~~~R~l 319 (450)
T PRK00149 292 KAEEEG-I---DLPDEVLEFIAKNITSNVREL 319 (450)
T ss_pred HHHHcC-C---CCCHHHHHHHHcCcCCCHHHH
Confidence 875321 1 122467888888888765543
No 168
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.30 E-value=0.094 Score=56.95 Aligned_cols=54 Identities=6% Similarity=-0.047 Sum_probs=33.7
Q ss_pred HHHhhcccCCCCCCcEEEEEcCchHHHHhh--------CCCceEeccCCChHHHHHHHHHHH
Q 039990 191 WQALKSPFMAGAPGSRIIVTTRSMDVALKM--------GSGKNYELKHLSDDDCWSVFLNHA 244 (1217)
Q Consensus 191 ~~~l~~~~~~~~~gs~ilvTtR~~~v~~~~--------~~~~~~~l~~l~~~~~~~lf~~~~ 244 (1217)
++.+...+.....+.+||+++......... .-...+++++++.+|-.+++...+
T Consensus 147 ~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l 208 (284)
T TIGR02880 147 IEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLML 208 (284)
T ss_pred HHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHH
Confidence 344444444444566777776543222111 113578999999999999988876
No 169
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.26 E-value=0.0017 Score=78.67 Aligned_cols=152 Identities=16% Similarity=0.161 Sum_probs=80.2
Q ss_pred CCccEEeecCCCCCcc-ccccc-ccccCcceEeeccCCCc-cccccccCCCCcccEEEEcCCCCCccccccCCCCCCcce
Q 039990 932 VTLKCIQIEDCSNFKV-LTSEC-QLSVAVEELTIDSCSNI-ESIAERFHDDACLRSIRLSYCKNLKSLPKGLNNLSHLHR 1008 (1217)
Q Consensus 932 ~~L~~L~l~~~~~l~~-~~~~~-~~l~~L~~L~l~~~~~l-~~l~~~~~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~ 1008 (1217)
.+|+.|++++...+.. .+..+ ..+|+|+.|.+++-... ..+..-..++|+|..||+|++ +++.+ .+++++.+|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCc-HHHhccccHHH
Confidence 3677777777444322 12222 24677777777762211 112222334677777777773 45555 56677777777
Q ss_pred EEecCCCCCcccCCCCCCCCcceEEEccCcCcccCCCCCCCCCcceEeeccCCCccc-------cCCCCCCCCCCeEEec
Q 039990 1009 RSIQGCHNLVSLPEDALPSNVVDVSIEDCDKLKAPLPTGKLSSLQLLTLIECPGIVF-------FPEEGLSTNLTDLEIS 1081 (1217)
Q Consensus 1009 L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~c~~l~~-------~~~~~~~~~L~~L~l~ 1081 (1217)
|.+++-+... . ..+. .+.+|++|+.||+|.-..... +.....+|+|+.|+.+
T Consensus 200 L~mrnLe~e~-~-----------------~~l~---~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcS 258 (699)
T KOG3665|consen 200 LSMRNLEFES-Y-----------------QDLI---DLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCS 258 (699)
T ss_pred HhccCCCCCc-h-----------------hhHH---HHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecC
Confidence 7666532111 0 1111 124567777777766432211 2223457788888888
Q ss_pred CCCCCccccccccccCCcccceeec
Q 039990 1082 GDNIYKPLVKWGFDKFSSLRKHCIN 1106 (1217)
Q Consensus 1082 ~~~~~~~~~~~~~~~l~~L~~L~l~ 1106 (1217)
+......+.+..+..-++|+...+-
T Consensus 259 gTdi~~~~le~ll~sH~~L~~i~~~ 283 (699)
T KOG3665|consen 259 GTDINEEILEELLNSHPNLQQIAAL 283 (699)
T ss_pred CcchhHHHHHHHHHhCccHhhhhhh
Confidence 8766655444333444455544443
No 170
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=96.25 E-value=0.012 Score=66.78 Aligned_cols=50 Identities=28% Similarity=0.222 Sum_probs=36.2
Q ss_pred ccccchhhHHHHHHHHhcCCC-------CCCCCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 80 AVYGRNEDKARILDMVLKNDP-------SDAANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 80 ~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
++.|.+..++++.+.+.-.-. -+-..++-|.++|++|.|||++|+++++.
T Consensus 146 digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~ 202 (398)
T PTZ00454 146 DIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH 202 (398)
T ss_pred HcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 578888888888776532100 00033577889999999999999999986
No 171
>PRK06696 uridine kinase; Validated
Probab=96.23 E-value=0.0057 Score=64.06 Aligned_cols=44 Identities=20% Similarity=0.292 Sum_probs=35.8
Q ss_pred cchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 83 GRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 83 Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.|++.+++|.+.+..... ....+|+|.|.+|+||||+|+++.+.
T Consensus 2 ~~~~~~~~la~~~~~~~~---~~~~iI~I~G~sgsGKSTlA~~L~~~ 45 (223)
T PRK06696 2 SRKQLIKELAEHILTLNL---TRPLRVAIDGITASGKTTFADELAEE 45 (223)
T ss_pred cHHHHHHHHHHHHHHhCC---CCceEEEEECCCCCCHHHHHHHHHHH
Confidence 367778888888875332 45689999999999999999998876
No 172
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=96.20 E-value=0.034 Score=64.56 Aligned_cols=51 Identities=27% Similarity=0.233 Sum_probs=37.0
Q ss_pred CccccchhhHHHHHHHHhcCCCC-------CCCCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 79 PAVYGRNEDKARILDMVLKNDPS-------DAANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.++.|.+..++++.+.+...-.. +-..++-|.++|++|.|||++|+++++.
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~e 239 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANS 239 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHh
Confidence 45778999998888876421000 0023456889999999999999999987
No 173
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.18 E-value=0.0091 Score=57.94 Aligned_cols=80 Identities=16% Similarity=0.065 Sum_probs=43.3
Q ss_pred CcceEEEccCcCcccCCCCCCCCCcceEeeccCCCccccCCC--CCCCCCCeEEecCCCCCccccccccccCCcccceee
Q 039990 1028 NVVDVSIEDCDKLKAPLPTGKLSSLQLLTLIECPGIVFFPEE--GLSTNLTDLEISGDNIYKPLVKWGFDKFSSLRKHCI 1105 (1217)
Q Consensus 1028 ~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 1105 (1217)
+...++++++..... ..+..++.|.+|.+++| .++.+... .++++|..|.+.+|+....-....+..++.|++|.+
T Consensus 43 ~~d~iDLtdNdl~~l-~~lp~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL-DNLPHLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhhc-ccCCCccccceEEecCC-cceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 444555555544444 33455666777766653 34333322 456667777777766653222223556666666666
Q ss_pred ccCC
Q 039990 1106 NRCS 1109 (1217)
Q Consensus 1106 ~~~~ 1109 (1217)
-+|+
T Consensus 121 l~Np 124 (233)
T KOG1644|consen 121 LGNP 124 (233)
T ss_pred cCCc
Confidence 6643
No 174
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.10 E-value=0.093 Score=66.28 Aligned_cols=46 Identities=24% Similarity=0.432 Sum_probs=38.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhcc
Q 039990 79 PAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDK 130 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 130 (1217)
..++||+.++.++++.|..... .-+.++|.+|+|||++|..++...
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~~------~n~lL~G~pGvGKT~l~~~la~~i 223 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRTK------NNPVLIGEPGVGKTAIVEGLAQRI 223 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCCc------CceEEECCCCCCHHHHHHHHHHHh
Confidence 4699999999999999976532 245689999999999999988763
No 175
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=96.05 E-value=0.0092 Score=61.88 Aligned_cols=172 Identities=14% Similarity=0.151 Sum_probs=98.7
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhcc-ccCCCCCeEE-EEeCCcccHHHHHHH
Q 039990 78 EPAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDK-LTDDFKPKAW-VCVSDDFDILRISKA 155 (1217)
Q Consensus 78 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~-~~~~F~~~~w-v~~~~~~~~~~~~~~ 155 (1217)
-.+++|.+..+.-+.+.+... .......+|++|.|||+-|.++++.. ..+.|++++- .++|..-...-+-..
T Consensus 35 ~de~~gQe~vV~~L~~a~~~~------~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~K 108 (346)
T KOG0989|consen 35 FDELAGQEHVVQVLKNALLRR------ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREK 108 (346)
T ss_pred HHhhcchHHHHHHHHHHHhhc------CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhh
Confidence 457899999999888888762 23577889999999999999988765 5567765553 344443322100000
Q ss_pred HHHHhhcCCCCCCChhHHHHHHHHH-----------HHhc--CcCHHHHHHhhcccCCCCCCcEEE-EEcCchHHHHhh-
Q 039990 156 ILESITRSSCGLTDLNSVQLKLKEA-----------VFKK--NKSYELWQALKSPFMAGAPGSRII-VTTRSMDVALKM- 220 (1217)
Q Consensus 156 i~~~l~~~~~~~~~~~~~~~~l~~~-----------l~~~--~~~~~~~~~l~~~~~~~~~gs~il-vTtR~~~v~~~~- 220 (1217)
..+++.+.....+. +.+. .-..+.|..++..+......++.+ ||+--..+....
T Consensus 109 -----------ik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~ 177 (346)
T KOG0989|consen 109 -----------IKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLV 177 (346)
T ss_pred -----------hcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHH
Confidence 01111110000000 0000 112367888887777666666644 444322211111
Q ss_pred CCCceEeccCCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhccCC
Q 039990 221 GSGKNYELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGL 270 (1217)
Q Consensus 221 ~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 270 (1217)
..-.-+.-++|..++..+-+...+-..+- +-..+..+.|++.++|-
T Consensus 178 SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v----~~d~~al~~I~~~S~Gd 223 (346)
T KOG0989|consen 178 SRCQKFRFKKLKDEDIVDRLEKIASKEGV----DIDDDALKLIAKISDGD 223 (346)
T ss_pred hhHHHhcCCCcchHHHHHHHHHHHHHhCC----CCCHHHHHHHHHHcCCc
Confidence 11246788899999998888888744321 12245677888888774
No 176
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.03 E-value=0.064 Score=56.07 Aligned_cols=57 Identities=23% Similarity=0.350 Sum_probs=40.1
Q ss_pred EEEEEEccCCchHHHHHHHHHhcc-c--cCCCCCeEEEEeCC------cc-----cHHHHHHHHHHHhhcC
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDK-L--TDDFKPKAWVCVSD------DF-----DILRISKAILESITRS 163 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~-~--~~~F~~~~wv~~~~------~~-----~~~~~~~~i~~~l~~~ 163 (1217)
|+|.++|++|.|||+|+++++++. + .+.|....-+.+.. .| -+..++++|.+-+...
T Consensus 178 RliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~ 248 (423)
T KOG0744|consen 178 RLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDR 248 (423)
T ss_pred eEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCC
Confidence 799999999999999999999986 3 35565555555432 22 2556666766666543
No 177
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=96.02 E-value=0.13 Score=56.94 Aligned_cols=81 Identities=14% Similarity=0.122 Sum_probs=49.7
Q ss_pred HHHHHhhcccCCCCCCcEEEEEcCchH-HHHhh-CCCceEeccCCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHh
Q 039990 189 ELWQALKSPFMAGAPGSRIIVTTRSMD-VALKM-GSGKNYELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAK 266 (1217)
Q Consensus 189 ~~~~~l~~~~~~~~~gs~ilvTtR~~~-v~~~~-~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~ 266 (1217)
...+.+...+..-..++.+|+||.+.. +.... .....+.+.+++.+++.+.+...... ...+.+..++..
T Consensus 121 ~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~--------~~~~~~~~~l~l 192 (328)
T PRK05707 121 NAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPE--------SDERERIELLTL 192 (328)
T ss_pred HHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhccc--------CChHHHHHHHHH
Confidence 334444444443335666777776643 33222 23467899999999999888765311 112346677899
Q ss_pred ccCCchhHHHH
Q 039990 267 CKGLPLAARAL 277 (1217)
Q Consensus 267 ~~g~PLai~~~ 277 (1217)
++|.|.....+
T Consensus 193 a~Gsp~~A~~l 203 (328)
T PRK05707 193 AGGSPLRALQL 203 (328)
T ss_pred cCCCHHHHHHH
Confidence 99999755444
No 178
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.01 E-value=0.26 Score=58.27 Aligned_cols=149 Identities=11% Similarity=0.128 Sum_probs=79.2
Q ss_pred EEEEEEccCCchHHHHHHHHHhccccCCC--CCeEEEEeCCcccHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHH---H
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDKLTDDF--KPKAWVCVSDDFDILRISKAILESITRSSCGLTDLNSVQLKLKEA---V 181 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~F--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~---l 181 (1217)
..+.|+|..|.|||.|++++++. ....+ ..+++++. .++..++...+... ..+.....++.. +
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~-a~~~~~g~~V~Yita------eef~~el~~al~~~-----~~~~f~~~y~~~DLLl 382 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHY-ARRLYPGTRVRYVSS------EEFTNEFINSIRDG-----KGDSFRRRYREMDILL 382 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHH-HHHhCCCCeEEEeeH------HHHHHHHHHHHHhc-----cHHHHHHHhhcCCEEE
Confidence 35899999999999999999987 33322 23455543 22333333333211 111111111110 0
Q ss_pred Hhc---CcCHHHHH-HhhcccCC-CCCCcEEEEEcCch---------HHHHhhCCCceEeccCCChHHHHHHHHHHHhCC
Q 039990 182 FKK---NKSYELWQ-ALKSPFMA-GAPGSRIIVTTRSM---------DVALKMGSGKNYELKHLSDDDCWSVFLNHAFEG 247 (1217)
Q Consensus 182 ~~~---~~~~~~~~-~l~~~~~~-~~~gs~ilvTtR~~---------~v~~~~~~~~~~~l~~l~~~~~~~lf~~~~~~~ 247 (1217)
.+. ....+.|+ .+...+.. ...|..|||||+.. .+...+...-+++++..+.+.-.+++.+++...
T Consensus 383 IDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r 462 (617)
T PRK14086 383 VDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQE 462 (617)
T ss_pred EehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhc
Confidence 000 11112222 12221111 12355688888753 233444556789999999999999999987443
Q ss_pred CCCCCCCchhhHHHHHHHhccCCc
Q 039990 248 IDTGTQGNFESTRQRVVAKCKGLP 271 (1217)
Q Consensus 248 ~~~~~~~~~~~~~~~i~~~~~g~P 271 (1217)
. .. --+++++-|++.+.+..
T Consensus 463 ~-l~---l~~eVi~yLa~r~~rnv 482 (617)
T PRK14086 463 Q-LN---APPEVLEFIASRISRNI 482 (617)
T ss_pred C-CC---CCHHHHHHHHHhccCCH
Confidence 2 11 12456777777766553
No 179
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=95.92 E-value=0.16 Score=60.69 Aligned_cols=172 Identities=11% Similarity=0.083 Sum_probs=92.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhcc-ccCC-------------------CCCe
Q 039990 79 PAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDK-LTDD-------------------FKPK 138 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~-~~~~-------------------F~~~ 138 (1217)
.+++|.+.....+...+.... -.+.+.++|..|+|||++|+.+.+.. .... -..+
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~dv 90 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGK-----ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMDV 90 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCCe
Confidence 479999999999999987643 23677889999999999999987653 2111 0112
Q ss_pred EEEEeCCcccHHHHHHHHHHHhhcCCCC-------CCChhHHHHHHHHHHHhcCcCHHHHHHhhcccCCCCCCcEEE-EE
Q 039990 139 AWVCVSDDFDILRISKAILESITRSSCG-------LTDLNSVQLKLKEAVFKKNKSYELWQALKSPFMAGAPGSRII-VT 210 (1217)
Q Consensus 139 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~~gs~il-vT 210 (1217)
+.+..+....+. -.+++.+.+...... .++.+. -....+..+...+........+| +|
T Consensus 91 ~eidaas~~~vd-~ir~i~~~v~~~p~~~~~kViIIDE~~~-------------Lt~~a~naLLKtLEepp~~~ifIlat 156 (559)
T PRK05563 91 IEIDAASNNGVD-EIRDIRDKVKYAPSEAKYKVYIIDEVHM-------------LSTGAFNALLKTLEEPPAHVIFILAT 156 (559)
T ss_pred EEeeccccCCHH-HHHHHHHHHhhCcccCCeEEEEEECccc-------------CCHHHHHHHHHHhcCCCCCeEEEEEe
Confidence 333332222111 111222222111100 000000 01234555554444333344444 45
Q ss_pred cCchHHHHhh-CCCceEeccCCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhccCCchh
Q 039990 211 TRSMDVALKM-GSGKNYELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGLPLA 273 (1217)
Q Consensus 211 tR~~~v~~~~-~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 273 (1217)
|....+.... .....++..+++.++..+.+.+.+-..+ . .-..+.+..|++.++|-+-.
T Consensus 157 t~~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~eg-i---~i~~~al~~ia~~s~G~~R~ 216 (559)
T PRK05563 157 TEPHKIPATILSRCQRFDFKRISVEDIVERLKYILDKEG-I---EYEDEALRLIARAAEGGMRD 216 (559)
T ss_pred CChhhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcC-C---CCCHHHHHHHHHHcCCCHHH
Confidence 4443333222 2235788999999998888877663221 1 11245677888888886643
No 180
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.86 E-value=0.066 Score=58.99 Aligned_cols=74 Identities=15% Similarity=0.193 Sum_probs=42.3
Q ss_pred CcEEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCc-ccHHHHHHHHHHHhhcCCCCCCChhHHHHHHHH
Q 039990 105 NFRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDD-FDILRISKAILESITRSSCGLTDLNSVQLKLKE 179 (1217)
Q Consensus 105 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~ 179 (1217)
..++|+|+|.+|+||||++..++.......+ .+..++.... ....+-++..++.++.+.....+.+.+...+..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~Gk-kVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~ 314 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKK-TVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTY 314 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCC-cEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHH
Confidence 4579999999999999999998865322222 3445554332 122333344444444443333455555544433
No 181
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.81 E-value=0.0082 Score=55.99 Aligned_cols=31 Identities=29% Similarity=0.384 Sum_probs=24.8
Q ss_pred cEEEEEEccCCchHHHHHHHHHhccccCCCC
Q 039990 106 FRVIPLVGMGGIGKTTLAQEVYNDKLTDDFK 136 (1217)
Q Consensus 106 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~ 136 (1217)
...|+|.|++|+||||+++.+.+..-...|.
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~k 35 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYK 35 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCce
Confidence 3578999999999999999998764334465
No 182
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=95.78 E-value=0.0019 Score=58.11 Aligned_cols=84 Identities=17% Similarity=0.249 Sum_probs=42.3
Q ss_pred ceEEEcCCCCcccccccccccccChhhhcccccCcEEecccccccccccccccc-cccccEEeecCCccccccCCCCccC
Q 039990 484 LRVLSLEKDNIAEVPISIGCLKCLPEAITSLFNLEILILSYCWCLLKLPSSIGN-LVNLHHLDIEGADRLCELPLGMKEL 562 (1217)
Q Consensus 484 Lr~L~L~~~~i~~lp~~i~~L~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~-L~~L~~L~l~~~~~l~~lp~~i~~L 562 (1217)
+..+||+.|.+-.+++ .+..+.+.++|...+|++| .++.+|..+.. .+.+..|++.+| .+..+|.++..+
T Consensus 29 ~h~ldLssc~lm~i~d-------avy~l~~~~el~~i~ls~N-~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam 99 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIAD-------AVYMLSKGYELTKISLSDN-GFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAM 99 (177)
T ss_pred hhhcccccchhhHHHH-------HHHHHhCCceEEEEecccc-hhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhh
Confidence 3345555555554442 2333445555555555555 45555554432 235555555555 555555555555
Q ss_pred cccccccccccccC
Q 039990 563 KCLRTLTDFINVID 576 (1217)
Q Consensus 563 ~~L~~L~~~~n~~~ 576 (1217)
+.|+.|++..|..+
T Consensus 100 ~aLr~lNl~~N~l~ 113 (177)
T KOG4579|consen 100 PALRSLNLRFNPLN 113 (177)
T ss_pred HHhhhcccccCccc
Confidence 55555555444443
No 183
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=95.73 E-value=0.0098 Score=68.58 Aligned_cols=69 Identities=23% Similarity=0.365 Sum_probs=49.4
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCcccHH
Q 039990 78 EPAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDFDIL 150 (1217)
Q Consensus 78 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~~~~~ 150 (1217)
+.+-+|.++-.++|++.+....-.++.+-+++..+|++|||||++|+.++....++.| -++++.-.|+.
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFf----RfSvGG~tDvA 478 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFF----RFSVGGMTDVA 478 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceE----EEeccccccHH
Confidence 5567999999999999986543332244589999999999999999999876333333 24455444433
No 184
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.69 E-value=0.022 Score=57.72 Aligned_cols=58 Identities=24% Similarity=0.200 Sum_probs=41.4
Q ss_pred cEEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCC-cccHHHHHHHHHHHhhcCC
Q 039990 106 FRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSD-DFDILRISKAILESITRSS 164 (1217)
Q Consensus 106 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~ 164 (1217)
+++|.++|+.|+||||.+.+++.+. +..=..+..|+... .....+-++..++.++.+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~-~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~ 59 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARL-KLKGKKVALISADTYRIGAVEQLKTYAEILGVPF 59 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHH-HHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHHH-hhccccceeecCCCCCccHHHHHHHHHHHhcccc
Confidence 3799999999999998888877663 22233566777653 3456777888888888664
No 185
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.68 E-value=0.23 Score=50.36 Aligned_cols=183 Identities=17% Similarity=0.154 Sum_probs=87.4
Q ss_pred CccccchhhHHH---HHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCc-----ccHH
Q 039990 79 PAVYGRNEDKAR---ILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDD-----FDIL 150 (1217)
Q Consensus 79 ~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~-----~~~~ 150 (1217)
+++||.++...+ |++.|...+.=++-.++-|..+|++|.|||.+|+++++. .+-.| +-|.+.+- -|-.
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane-~kvp~---l~vkat~liGehVGdga 196 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANE-AKVPL---LLVKATELIGEHVGDGA 196 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcc-cCCce---EEechHHHHHHHhhhHH
Confidence 568898765433 455555432211245688999999999999999999987 22222 11211110 0111
Q ss_pred HHHHHHHHHhhcCCC---CCCChhHHHHHHHHHHHhcCcCHHHHHHhhcccCC--CCCCcEEEEEcCchHHHHhh---CC
Q 039990 151 RISKAILESITRSSC---GLTDLNSVQLKLKEAVFKKNKSYELWQALKSPFMA--GAPGSRIIVTTRSMDVALKM---GS 222 (1217)
Q Consensus 151 ~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~--~~~gs~ilvTtR~~~v~~~~---~~ 222 (1217)
.-..++.+......+ -.++.+.+. .=+++-.-+.|..+..+.+..-+.. .+.|...|-.|......... .-
T Consensus 197 r~Ihely~rA~~~aPcivFiDE~DAia-LdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~aiRsRF 275 (368)
T COG1223 197 RRIHELYERARKAAPCIVFIDELDAIA-LDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELLDPAIRSRF 275 (368)
T ss_pred HHHHHHHHHHHhcCCeEEEehhhhhhh-hhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhcCHHHHhhh
Confidence 111111111111111 112222211 1111111112223334444433322 34566666666665543221 22
Q ss_pred CceEeccCCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhccCCc
Q 039990 223 GKNYELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGLP 271 (1217)
Q Consensus 223 ~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 271 (1217)
...++..--+++|-.+++..++-.- +-....-.+.++++.+|+.
T Consensus 276 EeEIEF~LP~~eEr~~ile~y~k~~-----Plpv~~~~~~~~~~t~g~S 319 (368)
T COG1223 276 EEEIEFKLPNDEERLEILEYYAKKF-----PLPVDADLRYLAAKTKGMS 319 (368)
T ss_pred hheeeeeCCChHHHHHHHHHHHHhC-----CCccccCHHHHHHHhCCCC
Confidence 3466666678888888888887221 1111222556666666653
No 186
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=95.59 E-value=0.19 Score=56.05 Aligned_cols=145 Identities=11% Similarity=0.073 Sum_probs=77.7
Q ss_pred cccc-chhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhcc-ccCC-------------------CCCe
Q 039990 80 AVYG-RNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDK-LTDD-------------------FKPK 138 (1217)
Q Consensus 80 ~~vG-r~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~-~~~~-------------------F~~~ 138 (1217)
.++| -+...+.+.+.+... .-.....++|+.|+|||++|..+.+.. ..+. ++..
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~-----~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~ 80 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKN-----RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDV 80 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCE
Confidence 3566 666677777777654 234677899999999999999987664 2211 2222
Q ss_pred EEEEeC-CcccHHHHHHHHHHHhhcCCCCC-------CChhHHHHHHHHHHHhcCcCHHHHHHhhcccCCCCCCcEEEEE
Q 039990 139 AWVCVS-DDFDILRISKAILESITRSSCGL-------TDLNSVQLKLKEAVFKKNKSYELWQALKSPFMAGAPGSRIIVT 210 (1217)
Q Consensus 139 ~wv~~~-~~~~~~~~~~~i~~~l~~~~~~~-------~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~~gs~ilvT 210 (1217)
.++... ....+.+ .+++.+.+....... ++.+ .-+....+.+...+..-..++.+|.+
T Consensus 81 ~~i~~~~~~i~id~-ir~l~~~~~~~~~~~~~kvviI~~a~-------------~~~~~a~NaLLK~LEEPp~~~~~Il~ 146 (329)
T PRK08058 81 HLVAPDGQSIKKDQ-IRYLKEEFSKSGVESNKKVYIIEHAD-------------KMTASAANSLLKFLEEPSGGTTAILL 146 (329)
T ss_pred EEeccccccCCHHH-HHHHHHHHhhCCcccCceEEEeehHh-------------hhCHHHHHHHHHHhcCCCCCceEEEE
Confidence 222211 1112222 222223322111100 0001 11223344555555554567777777
Q ss_pred cCchH-HHHhh-CCCceEeccCCChHHHHHHHHHH
Q 039990 211 TRSMD-VALKM-GSGKNYELKHLSDDDCWSVFLNH 243 (1217)
Q Consensus 211 tR~~~-v~~~~-~~~~~~~l~~l~~~~~~~lf~~~ 243 (1217)
|.+.. +.... .....+++.+++.++..+.+...
T Consensus 147 t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 147 TENKHQILPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred eCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 76533 22222 33468999999999988877653
No 187
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.56 E-value=0.22 Score=55.74 Aligned_cols=152 Identities=18% Similarity=0.155 Sum_probs=76.6
Q ss_pred CCcEEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCcccHHH--HHHHHHHHh---hcCCC---CCCChhHHHH
Q 039990 104 ANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDFDILR--ISKAILESI---TRSSC---GLTDLNSVQL 175 (1217)
Q Consensus 104 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~~~~~~--~~~~i~~~l---~~~~~---~~~~~~~~~~ 175 (1217)
.++.-|.+.|++|+|||+||.+++.. ..|+.+=-++...-..+.+ -...|-+.+ ..... -.++.+.+.
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~---S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLi- 611 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALS---SDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLL- 611 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhh---cCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhh-
Confidence 45677889999999999999998854 7888555444222111111 111111111 11111 112222221
Q ss_pred HHHHHHH-hcCcCHHHHHHhhc---ccCCCCCCcEEEEEcCchHHHHhhCC----CceEeccCCCh-HHHHHHHHHHHhC
Q 039990 176 KLKEAVF-KKNKSYELWQALKS---PFMAGAPGSRIIVTTRSMDVALKMGS----GKNYELKHLSD-DDCWSVFLNHAFE 246 (1217)
Q Consensus 176 ~l~~~l~-~~~~~~~~~~~l~~---~~~~~~~gs~ilvTtR~~~v~~~~~~----~~~~~l~~l~~-~~~~~lf~~~~~~ 246 (1217)
++.. +--...-..+.+.- ..|+.+..--|+-||....|.+.|+- ...+.++.++. ++..+.+...-
T Consensus 612 ---D~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~vl~~~n-- 686 (744)
T KOG0741|consen 612 ---DYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQLLEVLEELN-- 686 (744)
T ss_pred ---cccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHHHHHHHHHcc--
Confidence 1111 00111122222222 22322223335558888888888753 35888888887 67777776643
Q ss_pred CCCCCCCCchhhHHHHHHHhc
Q 039990 247 GIDTGTQGNFESTRQRVVAKC 267 (1217)
Q Consensus 247 ~~~~~~~~~~~~~~~~i~~~~ 267 (1217)
.-.+.+.+.++++...+|
T Consensus 687 ---~fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 687 ---IFSDDEVRAIAEQLLSKK 704 (744)
T ss_pred ---CCCcchhHHHHHHHhccc
Confidence 122333445566666655
No 188
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.45 E-value=0.011 Score=57.49 Aligned_cols=59 Identities=19% Similarity=0.344 Sum_probs=28.8
Q ss_pred ceEEEcCCCCcccccccccccccChhhhcccccCcEEecccccccccccccccc-cccccEEeecCCcccccc
Q 039990 484 LRVLSLEKDNIAEVPISIGCLKCLPEAITSLFNLEILILSYCWCLLKLPSSIGN-LVNLHHLDIEGADRLCEL 555 (1217)
Q Consensus 484 Lr~L~L~~~~i~~lp~~i~~L~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~-L~~L~~L~l~~~~~l~~l 555 (1217)
.-.+||++|.+..++. |..+..|.+|.|++| .|..+-..+.. +.+|..|.+.+| ++..+
T Consensus 44 ~d~iDLtdNdl~~l~~-----------lp~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~LtnN-si~~l 103 (233)
T KOG1644|consen 44 FDAIDLTDNDLRKLDN-----------LPHLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILTNN-SIQEL 103 (233)
T ss_pred cceecccccchhhccc-----------CCCccccceEEecCC-cceeeccchhhhccccceEEecCc-chhhh
Confidence 3445555555554432 444555555555555 44444444432 344555555555 34333
No 189
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=95.43 E-value=0.13 Score=61.12 Aligned_cols=51 Identities=29% Similarity=0.331 Sum_probs=34.9
Q ss_pred CCccccchhhHHHHHHHHh---cCC----CCCCCCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 78 EPAVYGRNEDKARILDMVL---KND----PSDAANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 78 ~~~~vGr~~~~~~l~~~L~---~~~----~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
-.+++|.++.++++.+.+. ... .+. ...+-+.++|++|.|||++|++++..
T Consensus 54 ~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~-~~~~giLL~GppGtGKT~la~alA~~ 111 (495)
T TIGR01241 54 FKDVAGIDEAKEELMEIVDFLKNPSKFTKLGA-KIPKGVLLVGPPGTGKTLLAKAVAGE 111 (495)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCC-CCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 3468898877666655443 110 001 23456889999999999999999876
No 190
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.42 E-value=0.012 Score=67.54 Aligned_cols=52 Identities=21% Similarity=0.263 Sum_probs=40.5
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 78 EPAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 78 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
-.+++|.++.+++|++.|.....+-...-+++.++|++|+|||+||+.+.+-
T Consensus 75 F~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~ 126 (644)
T PRK15455 75 FEEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSL 126 (644)
T ss_pred hhcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHH
Confidence 3469999999999999994321111134479999999999999999998875
No 191
>PRK07667 uridine kinase; Provisional
Probab=95.41 E-value=0.021 Score=58.17 Aligned_cols=38 Identities=18% Similarity=0.386 Sum_probs=29.8
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 88 KARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 88 ~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.+++.+.+.... ....+|+|.|.+|.||||+|+.+...
T Consensus 3 ~~~~~~~~~~~~----~~~~iIgI~G~~gsGKStla~~L~~~ 40 (193)
T PRK07667 3 TNELINIMKKHK----ENRFILGIDGLSRSGKTTFVANLKEN 40 (193)
T ss_pred HHHHHHHHHhcC----CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 456666665544 33489999999999999999998875
No 192
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.35 E-value=0.087 Score=58.03 Aligned_cols=75 Identities=21% Similarity=0.177 Sum_probs=47.2
Q ss_pred cEEEEEEccCCchHH-HHHHHHHhccccCCCCCeEEEEeCC-cccHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHH
Q 039990 106 FRVIPLVGMGGIGKT-TLAQEVYNDKLTDDFKPKAWVCVSD-DFDILRISKAILESITRSSCGLTDLNSVQLKLKEA 180 (1217)
Q Consensus 106 ~~vv~I~G~gGiGKT-tLA~~v~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 180 (1217)
-++|+++|+.||||| |||+.++.......=..+..|+... .....+-++..++-++.+.....+..++...+...
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l 279 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEAL 279 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHh
Confidence 589999999999997 6666655442123334566776543 33455556666777777665555666555554433
No 193
>CHL00176 ftsH cell division protein; Validated
Probab=95.35 E-value=0.11 Score=62.71 Aligned_cols=51 Identities=29% Similarity=0.349 Sum_probs=34.5
Q ss_pred CccccchhhHHHHHHHH---hcCCC---CCCCCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 79 PAVYGRNEDKARILDMV---LKNDP---SDAANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L---~~~~~---~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.+++|.++..+++.+.+ ..... -+....+-|.++|++|.|||++|++++..
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e 239 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGE 239 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 46888877666655543 22211 00123456899999999999999999876
No 194
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=95.30 E-value=0.014 Score=67.75 Aligned_cols=57 Identities=28% Similarity=0.448 Sum_probs=42.7
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhccccCCC
Q 039990 78 EPAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDF 135 (1217)
Q Consensus 78 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F 135 (1217)
+.+-+|-++..++|++.|....-...-.-.+++++|++|||||+||+.+++. ....|
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~a-l~Rkf 378 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKA-LGRKF 378 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHH-hCCCE
Confidence 5567899999999999986432111122369999999999999999999876 44444
No 195
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=95.30 E-value=0.53 Score=51.50 Aligned_cols=77 Identities=13% Similarity=0.133 Sum_probs=48.1
Q ss_pred HHHHHhhcccCCCCCCcEEEEEcCc-hHHHHhh-CCCceEeccCCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHh
Q 039990 189 ELWQALKSPFMAGAPGSRIIVTTRS-MDVALKM-GSGKNYELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAK 266 (1217)
Q Consensus 189 ~~~~~l~~~~~~~~~gs~ilvTtR~-~~v~~~~-~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~ 266 (1217)
...+.+...+..-..++.+|.+|.+ ..+.... .....+.+.+++.+++.+.+.... .. .+..+++.
T Consensus 123 ~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~-----~~-------~~~~~l~l 190 (319)
T PRK06090 123 SASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQG-----IT-------VPAYALKL 190 (319)
T ss_pred HHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcC-----Cc-------hHHHHHHH
Confidence 3445555444444456666665554 3443333 334688999999999998886541 11 24567899
Q ss_pred ccCCchhHHHH
Q 039990 267 CKGLPLAARAL 277 (1217)
Q Consensus 267 ~~g~PLai~~~ 277 (1217)
++|.|+....+
T Consensus 191 ~~G~p~~A~~~ 201 (319)
T PRK06090 191 NMGSPLKTLAM 201 (319)
T ss_pred cCCCHHHHHHH
Confidence 99999876554
No 196
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.22 E-value=0.086 Score=50.96 Aligned_cols=23 Identities=35% Similarity=0.631 Sum_probs=21.3
Q ss_pred EEEEEEccCCchHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
..+.|+|.+|.||||+.+.+|..
T Consensus 29 ef~fl~GpSGAGKSTllkLi~~~ 51 (223)
T COG2884 29 EFVFLTGPSGAGKSTLLKLIYGE 51 (223)
T ss_pred eEEEEECCCCCCHHHHHHHHHhh
Confidence 58899999999999999999976
No 197
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=95.19 E-value=0.55 Score=51.49 Aligned_cols=76 Identities=16% Similarity=0.221 Sum_probs=46.5
Q ss_pred HhhcccCCCCCCcEEEEEcCc-hHHHHhh-CCCceEeccCCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhccCC
Q 039990 193 ALKSPFMAGAPGSRIIVTTRS-MDVALKM-GSGKNYELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGL 270 (1217)
Q Consensus 193 ~l~~~~~~~~~gs~ilvTtR~-~~v~~~~-~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 270 (1217)
.+...+..-..++.+|++|.+ ..+.... .....+.+.+++.+++.+.+.... .. ...+..++..++|.
T Consensus 132 aLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~-----~~-----~~~a~~~~~l~~G~ 201 (319)
T PRK08769 132 ALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG-----VS-----ERAAQEALDAARGH 201 (319)
T ss_pred HHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC-----CC-----hHHHHHHHHHcCCC
Confidence 344344333456666666654 3333222 234678899999999988886531 11 22366789999999
Q ss_pred chhHHHHH
Q 039990 271 PLAARALG 278 (1217)
Q Consensus 271 PLai~~~~ 278 (1217)
|+....+.
T Consensus 202 p~~A~~~~ 209 (319)
T PRK08769 202 PGLAAQWL 209 (319)
T ss_pred HHHHHHHh
Confidence 98665443
No 198
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.08 E-value=0.012 Score=35.27 Aligned_cols=16 Identities=31% Similarity=0.613 Sum_probs=8.1
Q ss_pred ceEEEcCCCCcccccc
Q 039990 484 LRVLSLEKDNIAEVPI 499 (1217)
Q Consensus 484 Lr~L~L~~~~i~~lp~ 499 (1217)
|++|||++|+++.+|.
T Consensus 2 L~~Ldls~n~l~~ip~ 17 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPS 17 (22)
T ss_dssp ESEEEETSSEESEEGT
T ss_pred ccEEECCCCcCEeCCh
Confidence 4555555555554443
No 199
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=95.05 E-value=1.6 Score=44.88 Aligned_cols=167 Identities=16% Similarity=0.092 Sum_probs=90.8
Q ss_pred cEEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeC-CcccHHHHHHHHHHHhhcCCCCCCChhHHH----HHHHHH
Q 039990 106 FRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVS-DDFDILRISKAILESITRSSCGLTDLNSVQ----LKLKEA 180 (1217)
Q Consensus 106 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~-~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~----~~l~~~ 180 (1217)
-.++.|+|.-|.|||.++++....... +.++-|.+. +..+...+...|+..+..+. ........ ..+...
T Consensus 51 qg~~~vtGevGsGKTv~~Ral~~s~~~---d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p--~~~~~~~~e~~~~~L~al 125 (269)
T COG3267 51 QGILAVTGEVGSGKTVLRRALLASLNE---DQVAVVVIDKPTLSDATLLEAIVADLESQP--KVNVNAVLEQIDRELAAL 125 (269)
T ss_pred CceEEEEecCCCchhHHHHHHHHhcCC---CceEEEEecCcchhHHHHHHHHHHHhccCc--cchhHHHHHHHHHHHHHH
Confidence 369999999999999999954443111 122223333 34567778888888887632 22333222 223332
Q ss_pred HHhc-------Cc-----CHHHHHHhhcccCCC----CCCcEEEEEc-------CchHHHHhhC-CCce-EeccCCChHH
Q 039990 181 VFKK-------NK-----SYELWQALKSPFMAG----APGSRIIVTT-------RSMDVALKMG-SGKN-YELKHLSDDD 235 (1217)
Q Consensus 181 l~~~-------~~-----~~~~~~~l~~~~~~~----~~gs~ilvTt-------R~~~v~~~~~-~~~~-~~l~~l~~~~ 235 (1217)
..+. ++ ..+..+.++...... +.=+.+++-- |.. +.+... ...+ |++.|++.++
T Consensus 126 ~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~-~l~e~~~R~~ir~~l~P~~~~~ 204 (269)
T COG3267 126 VKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLP-VLRELEQRIDIRIELPPLTEAE 204 (269)
T ss_pred HHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchH-HHHhhhheEEEEEecCCcChHH
Confidence 2222 22 223344443322111 1112233211 111 111111 1234 8999999998
Q ss_pred HHHHHHHHHhCCCCCCCCCchhhHHHHHHHhccCCchhHHHHHH
Q 039990 236 CWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGLPLAARALGG 279 (1217)
Q Consensus 236 ~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~ 279 (1217)
...++..+..+..... +--..+....|.....|.|.+|..++.
T Consensus 205 t~~yl~~~Le~a~~~~-~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 205 TGLYLRHRLEGAGLPE-PLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred HHHHHHHHHhccCCCc-ccCChhHHHHHHHHhccchHHHHHHHH
Confidence 8888887765443221 112345678889999999999987764
No 200
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.04 E-value=0.065 Score=54.74 Aligned_cols=29 Identities=31% Similarity=0.376 Sum_probs=23.2
Q ss_pred EEEEEccCCchHHHHHHHHHhccccCCCC
Q 039990 108 VIPLVGMGGIGKTTLAQEVYNDKLTDDFK 136 (1217)
Q Consensus 108 vv~I~G~gGiGKTtLA~~v~~~~~~~~F~ 136 (1217)
||+|.|.+|+||||+|+++.....+....
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~ 29 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIP 29 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcC
Confidence 79999999999999999988763333343
No 201
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.02 E-value=0.01 Score=35.45 Aligned_cols=21 Identities=52% Similarity=0.513 Sum_probs=11.6
Q ss_pred cCcEEecccccccccccccccc
Q 039990 516 NLEILILSYCWCLLKLPSSIGN 537 (1217)
Q Consensus 516 ~L~~L~L~~~~~l~~lp~~i~~ 537 (1217)
+|++|||++| .++.+|.+|++
T Consensus 1 ~L~~Ldls~n-~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSS-EESEEGTTTTT
T ss_pred CccEEECCCC-cCEeCChhhcC
Confidence 3556666666 55556555443
No 202
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.01 E-value=0.0097 Score=60.54 Aligned_cols=37 Identities=24% Similarity=0.357 Sum_probs=17.0
Q ss_pred CCCCeEEecCCCCCccccccccccCCcccceeeccCC
Q 039990 1073 TNLTDLEISGDNIYKPLVKWGFDKFSSLRKHCINRCS 1109 (1217)
Q Consensus 1073 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 1109 (1217)
|+|++|++++|.+...-....+..+.+|..|++.+|+
T Consensus 91 P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 91 PNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCS 127 (260)
T ss_pred CceeEEeecCCccccccccchhhhhcchhhhhcccCC
Confidence 5555555555544422212223444555555555543
No 203
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=94.97 E-value=0.017 Score=54.62 Aligned_cols=21 Identities=43% Similarity=0.664 Sum_probs=19.5
Q ss_pred EEEEccCCchHHHHHHHHHhc
Q 039990 109 IPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 109 v~I~G~gGiGKTtLA~~v~~~ 129 (1217)
|+|.|.+|+||||+|+++.+.
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999998876
No 204
>PRK13531 regulatory ATPase RavA; Provisional
Probab=94.94 E-value=0.029 Score=63.75 Aligned_cols=43 Identities=23% Similarity=0.308 Sum_probs=37.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 79 PAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
..++||++.++.+...+..+. -|.|.|.+|+|||++|+.+...
T Consensus 20 ~~i~gre~vI~lll~aalag~--------hVLL~GpPGTGKT~LAraLa~~ 62 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSGE--------SVFLLGPPGIAKSLIARRLKFA 62 (498)
T ss_pred hhccCcHHHHHHHHHHHccCC--------CEEEECCCChhHHHHHHHHHHH
Confidence 359999999999999887653 5779999999999999998875
No 205
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=94.94 E-value=0.032 Score=56.66 Aligned_cols=186 Identities=20% Similarity=0.191 Sum_probs=101.4
Q ss_pred hhhhcCCCCcceEEEcCCCCc----ccccccccccccChhhhcccccCcEEecccccccccccc----cccccccccEEe
Q 039990 474 LSDLLPKCKKLRVLSLEKDNI----AEVPISIGCLKCLPEAITSLFNLEILILSYCWCLLKLPS----SIGNLVNLHHLD 545 (1217)
Q Consensus 474 ~~~~~~~l~~Lr~L~L~~~~i----~~lp~~i~~L~~lp~~i~~L~~L~~L~L~~~~~l~~lp~----~i~~L~~L~~L~ 545 (1217)
+...+.+-++|++.+++.--. .++|+ +|+.|.+++-++++|+..+|+.|..-...|. -|.+-+.|.||.
T Consensus 50 l~~~ia~~~~L~vvnfsd~ftgr~kde~~~---~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~ 126 (388)
T COG5238 50 LCNVIANVRNLRVVNFSDAFTGRDKDELYS---NLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLK 126 (388)
T ss_pred HHHHHhhhcceeEeehhhhhhcccHHHHHH---HHHHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEE
Confidence 444455666777776664322 12232 2334566778888999999988854444443 356678889999
Q ss_pred ecCCccccccCCC-CccCcccccccccccccChhhhHHHHhcCCCCCCeEEEEecCCCCchhhHHHHhcccCCCCCccEE
Q 039990 546 IEGADRLCELPLG-MKELKCLRTLTDFINVIDSQEANEAMLRGKKDLEVLKLVWSGGPVDELREKNILDMLKPHCNIKRL 624 (1217)
Q Consensus 546 l~~~~~l~~lp~~-i~~L~~L~~L~~~~n~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~L~~L 624 (1217)
+++| .+..+..+ |++ .|++|-. -......+.|++.....|.....+.. .....+..+.+|+.+
T Consensus 127 l~Nn-GlGp~aG~rigk--al~~la~-----------nKKaa~kp~Le~vicgrNRlengs~~--~~a~~l~sh~~lk~v 190 (388)
T COG5238 127 LNNN-GLGPIAGGRIGK--ALFHLAY-----------NKKAADKPKLEVVICGRNRLENGSKE--LSAALLESHENLKEV 190 (388)
T ss_pred eecC-CCCccchhHHHH--HHHHHHH-----------HhhhccCCCceEEEeccchhccCcHH--HHHHHHHhhcCceeE
Confidence 9888 45433221 321 2333321 11234456666665543332111111 122234455678888
Q ss_pred EEEeeCCCCC----CCCcCCCCcCcccEEEEecCCCCCC----CC-CCCCcCCCCeeEEcCCC
Q 039990 625 EIISYGSTRF----PSWVGDPSFSNVAVLKLENCDRCTS----LP-SLGQLCSLKDLTIVGMS 678 (1217)
Q Consensus 625 ~l~~~~~~~~----p~~~~~~~l~~L~~L~L~~~~~~~~----l~-~l~~l~~L~~L~l~~~~ 678 (1217)
.+..|++..- -...+...+.+|+.|+|.+|..... +. .+...+.|+.|.+..|-
T Consensus 191 ki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCl 253 (388)
T COG5238 191 KIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCL 253 (388)
T ss_pred EeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchh
Confidence 8877765421 0111223467888888888653211 11 24455668888888773
No 206
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=94.87 E-value=0.029 Score=52.47 Aligned_cols=44 Identities=27% Similarity=0.286 Sum_probs=32.4
Q ss_pred EEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCcccHHHHHHHHHHHhhcC
Q 039990 108 VIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDFDILRISKAILESITRS 163 (1217)
Q Consensus 108 vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 163 (1217)
+|.|.|.+|.||||+|+.++++. .=. . .+.-.++++|+++.+..
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~-gl~-----~------vsaG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHL-GLK-----L------VSAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHh-CCc-----e------eeccHHHHHHHHHcCCC
Confidence 68999999999999999999872 111 1 12345788888887654
No 207
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=94.75 E-value=0.81 Score=47.14 Aligned_cols=53 Identities=17% Similarity=0.219 Sum_probs=38.3
Q ss_pred CCCCCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 75 LTSEPAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 75 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.+.-.+++|.|++++.|++-...=-.+ ....-|.+||..|.|||++++++.+.
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G--~pannvLL~G~rGtGKSSlVkall~~ 75 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQG--LPANNVLLWGARGTGKSSLVKALLNE 75 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHcC--CCCcceEEecCCCCCHHHHHHHHHHH
Confidence 334568999999999887754321110 22346778999999999999998876
No 208
>PTZ00301 uridine kinase; Provisional
Probab=94.74 E-value=0.036 Score=56.78 Aligned_cols=24 Identities=29% Similarity=0.585 Sum_probs=21.6
Q ss_pred cEEEEEEccCCchHHHHHHHHHhc
Q 039990 106 FRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 106 ~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
..+|+|.|.+|.||||||+.+.+.
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~ 26 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSE 26 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHH
Confidence 369999999999999999988765
No 209
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=94.74 E-value=0.052 Score=54.62 Aligned_cols=25 Identities=36% Similarity=0.547 Sum_probs=22.9
Q ss_pred CcEEEEEEccCCchHHHHHHHHHhc
Q 039990 105 NFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 105 ~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.+.+|||.|.+|.||||+|++++..
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~ 31 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQ 31 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHH
Confidence 4579999999999999999998876
No 210
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=94.72 E-value=0.037 Score=54.75 Aligned_cols=65 Identities=22% Similarity=0.277 Sum_probs=45.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhccccCCC-CCeEEEEeCCcccH
Q 039990 79 PAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDF-KPKAWVCVSDDFDI 149 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F-~~~~wv~~~~~~~~ 149 (1217)
.++||-++.++++.-.-.+. ..+-+.|.||+|+||||-+..+++......| +++.=..+|.+-.+
T Consensus 27 ~dIVGNe~tv~rl~via~~g------nmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGI 92 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKEG------NMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGI 92 (333)
T ss_pred HHhhCCHHHHHHHHHHHHcC------CCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCcccccc
Confidence 47999998888886655443 3456779999999999998887776444444 45555555555443
No 211
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.71 E-value=0.023 Score=46.33 Aligned_cols=22 Identities=32% Similarity=0.616 Sum_probs=19.7
Q ss_pred EEEEEccCCchHHHHHHHHHhc
Q 039990 108 VIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 108 vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
+|+|.|.+|+||||+|+++.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998875
No 212
>PRK05541 adenylylsulfate kinase; Provisional
Probab=94.70 E-value=0.031 Score=56.11 Aligned_cols=37 Identities=32% Similarity=0.483 Sum_probs=29.2
Q ss_pred CcEEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEE
Q 039990 105 NFRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVC 142 (1217)
Q Consensus 105 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~ 142 (1217)
...+|.|.|+.|+||||+|+.++.. ....+...+++.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~-l~~~~~~~~~~~ 42 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYER-LKLKYSNVIYLD 42 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH-HHHcCCcEEEEe
Confidence 3469999999999999999999886 455566666653
No 213
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.59 E-value=0.77 Score=53.47 Aligned_cols=56 Identities=25% Similarity=0.208 Sum_probs=36.6
Q ss_pred CccccchhhHHHHHHHHhcCCCC-------CCCCcEEEEEEccCCchHHHHHHHHHhccccCCC
Q 039990 79 PAVYGRNEDKARILDMVLKNDPS-------DAANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDF 135 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F 135 (1217)
.++-|-++...++.+...-.-.. +-..++-|..+|+||.|||++|+++++. .+-.|
T Consensus 434 ~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne-~~~nF 496 (693)
T KOG0730|consen 434 DDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANE-AGMNF 496 (693)
T ss_pred hhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhh-hcCCe
Confidence 44555666666665444321110 0144678889999999999999999987 55555
No 214
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=94.58 E-value=0.24 Score=49.61 Aligned_cols=61 Identities=23% Similarity=0.266 Sum_probs=40.8
Q ss_pred ccccc-hhhHHHHHHHHhcCCCC-------CCCCcEEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCc
Q 039990 80 AVYGR-NEDKARILDMVLKNDPS-------DAANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDD 146 (1217)
Q Consensus 80 ~~vGr-~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~ 146 (1217)
++||+ |+.+.+|.+.+.-.-.. +-.+++-|.++|++|.|||-||++|+++ ...-|+.+|..
T Consensus 147 eMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahh------t~c~firvsgs 215 (404)
T KOG0728|consen 147 EMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH------TDCTFIRVSGS 215 (404)
T ss_pred HHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhh------cceEEEEechH
Confidence 46775 77777777665432110 1145677889999999999999999986 22345566543
No 215
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.55 E-value=0.019 Score=52.19 Aligned_cols=27 Identities=44% Similarity=0.641 Sum_probs=18.6
Q ss_pred EEEEccCCchHHHHHHHHHhccccCCCC
Q 039990 109 IPLVGMGGIGKTTLAQEVYNDKLTDDFK 136 (1217)
Q Consensus 109 v~I~G~gGiGKTtLA~~v~~~~~~~~F~ 136 (1217)
|.|+|.+|+|||++|+.++.. ....|.
T Consensus 2 vLleg~PG~GKT~la~~lA~~-~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARS-LGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHHH-TT--EE
T ss_pred EeeECCCccHHHHHHHHHHHH-cCCcee
Confidence 678999999999999999876 555564
No 216
>PRK08233 hypothetical protein; Provisional
Probab=94.55 E-value=0.029 Score=56.87 Aligned_cols=23 Identities=30% Similarity=0.588 Sum_probs=21.4
Q ss_pred EEEEEEccCCchHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.+|+|.|.+|+||||+|+.++..
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhh
Confidence 79999999999999999998875
No 217
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=94.55 E-value=0.06 Score=55.91 Aligned_cols=46 Identities=15% Similarity=0.154 Sum_probs=34.9
Q ss_pred cEEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCcccHHHHH
Q 039990 106 FRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDFDILRIS 153 (1217)
Q Consensus 106 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~~~~~~~~ 153 (1217)
-+++.|+|.+|+|||++|.+++.. ....-..++|++... ++...+.
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~-~~~~g~~v~yi~~e~-~~~~rl~ 57 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVN-AARQGKKVVYIDTEG-LSPERFK 57 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH-HHhCCCeEEEEECCC-CCHHHHH
Confidence 479999999999999999998865 333346789998865 5544433
No 218
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.51 E-value=0.003 Score=64.01 Aligned_cols=98 Identities=18% Similarity=0.106 Sum_probs=60.0
Q ss_pred CCCeEEecCCCCCccccccccccCCcccceeeccCCCccccccccccCCCCCCcceEeecCCCCCcccCc-cccCCcccc
Q 039990 1074 NLTDLEISGDNIYKPLVKWGFDKFSSLRKHCINRCSDAVSFPEVEKGVILPTSLTLIRISDFPKLERLSS-KGFHYLLSL 1152 (1217)
Q Consensus 1074 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~l~~L 1152 (1217)
+.+.|+.+||...+.. .+..|+.|+.|.|+-|. +.++. .+..+++|++|++.. |.+.+|.+ .-+.++++|
T Consensus 20 ~vkKLNcwg~~L~DIs---ic~kMp~lEVLsLSvNk-IssL~----pl~rCtrLkElYLRk-N~I~sldEL~YLknlpsL 90 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDIS---ICEKMPLLEVLSLSVNK-ISSLA----PLQRCTRLKELYLRK-NCIESLDELEYLKNLPSL 90 (388)
T ss_pred HhhhhcccCCCccHHH---HHHhcccceeEEeeccc-cccch----hHHHHHHHHHHHHHh-cccccHHHHHHHhcCchh
Confidence 4455555555443322 34667777777777643 33332 234577777777777 66766653 236778888
Q ss_pred cccccccccCcccCCCC------CCCCccceEec
Q 039990 1153 EQLKVSSCPNFTSFPEA------GFPSSLLFLDI 1180 (1217)
Q Consensus 1153 ~~L~l~~c~~l~~lp~~------~~~~sL~~L~l 1180 (1217)
+.|.|..||--..-+.. ..+|+|+.||=
T Consensus 91 r~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 91 RTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred hhHhhccCCcccccchhHHHHHHHHcccchhccC
Confidence 88888888766665432 23678887763
No 219
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=94.48 E-value=0.16 Score=55.65 Aligned_cols=77 Identities=10% Similarity=0.088 Sum_probs=47.6
Q ss_pred HHHHHhhcccCCCCCCcEEEEEcCch-HHHHhh-CCCceEeccCCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHh
Q 039990 189 ELWQALKSPFMAGAPGSRIIVTTRSM-DVALKM-GSGKNYELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAK 266 (1217)
Q Consensus 189 ~~~~~l~~~~~~~~~gs~ilvTtR~~-~v~~~~-~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~ 266 (1217)
.....+...+..-..++.+|++|.+. .+.... .....+.+.+++.++..+.+..... . + ...+...+..
T Consensus 122 ~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~~~~~~L~~~~~----~---~--~~~~~~~~~l 192 (325)
T PRK06871 122 AAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQQALDWLQAQSS----A---E--ISEILTALRI 192 (325)
T ss_pred HHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCCHHHHHHHHHHHhc----c---C--hHHHHHHHHH
Confidence 33445555554444566666666654 333222 2346889999999999988877641 1 0 1135667888
Q ss_pred ccCCchhH
Q 039990 267 CKGLPLAA 274 (1217)
Q Consensus 267 ~~g~PLai 274 (1217)
++|.|+..
T Consensus 193 ~~g~p~~A 200 (325)
T PRK06871 193 NYGRPLLA 200 (325)
T ss_pred cCCCHHHH
Confidence 99999633
No 220
>PRK05439 pantothenate kinase; Provisional
Probab=94.48 E-value=0.19 Score=54.43 Aligned_cols=26 Identities=23% Similarity=0.178 Sum_probs=22.9
Q ss_pred CCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 104 ANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 104 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
...-+|+|.|.+|+||||+|+.+...
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~ 109 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQAL 109 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 55689999999999999999987764
No 221
>PRK10536 hypothetical protein; Provisional
Probab=94.45 E-value=0.18 Score=52.46 Aligned_cols=49 Identities=24% Similarity=0.384 Sum_probs=38.2
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhcc-ccCCCC
Q 039990 80 AVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDK-LTDDFK 136 (1217)
Q Consensus 80 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~-~~~~F~ 136 (1217)
.+.+|......+..++... ..|.+.|.+|.|||+||.++..+. ..+.|+
T Consensus 56 ~i~p~n~~Q~~~l~al~~~--------~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~ 105 (262)
T PRK10536 56 PILARNEAQAHYLKAIESK--------QLIFATGEAGCGKTWISAAKAAEALIHKDVD 105 (262)
T ss_pred cccCCCHHHHHHHHHHhcC--------CeEEEECCCCCCHHHHHHHHHHHHHhcCCee
Confidence 4667888888888888642 389999999999999999988754 244454
No 222
>PRK06762 hypothetical protein; Provisional
Probab=94.43 E-value=0.033 Score=55.39 Aligned_cols=24 Identities=33% Similarity=0.488 Sum_probs=21.7
Q ss_pred cEEEEEEccCCchHHHHHHHHHhc
Q 039990 106 FRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 106 ~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.++|.|+|++|+||||+|+++.+.
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~ 25 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQER 25 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999998875
No 223
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.42 E-value=0.035 Score=57.60 Aligned_cols=26 Identities=35% Similarity=0.571 Sum_probs=23.2
Q ss_pred CCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 104 ANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 104 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
....+|+|.|.+|+||||||+.++..
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34579999999999999999998875
No 224
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=94.37 E-value=0.58 Score=45.92 Aligned_cols=130 Identities=15% Similarity=0.161 Sum_probs=68.1
Q ss_pred cchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhcc-ccC------------------CCCCeEEEEe
Q 039990 83 GRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDK-LTD------------------DFKPKAWVCV 143 (1217)
Q Consensus 83 Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~-~~~------------------~F~~~~wv~~ 143 (1217)
|-++..+.|.+.+..+. -...+.++|..|+||+++|..+++.. ... ..+...|+.-
T Consensus 1 gq~~~~~~L~~~~~~~~-----l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~ 75 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGR-----LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKP 75 (162)
T ss_dssp S-HHHHHHHHHHHHCTC-------SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEET
T ss_pred CcHHHHHHHHHHHHcCC-----cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEec
Confidence 55666777777776543 23578899999999999999987764 211 2345566654
Q ss_pred CCc---ccHHHHHHHHHHHhhcCCCCC-------CChhHHHHHHHHHHHhcCcCHHHHHHhhcccCCCCCCcEEEEEcCc
Q 039990 144 SDD---FDILRISKAILESITRSSCGL-------TDLNSVQLKLKEAVFKKNKSYELWQALKSPFMAGAPGSRIIVTTRS 213 (1217)
Q Consensus 144 ~~~---~~~~~~~~~i~~~l~~~~~~~-------~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~ 213 (1217)
... ..+.++. ++.+.+....... .+.+.+ +.+.+..+...+.....++++|++|++
T Consensus 76 ~~~~~~i~i~~ir-~i~~~~~~~~~~~~~KviiI~~ad~l-------------~~~a~NaLLK~LEepp~~~~fiL~t~~ 141 (162)
T PF13177_consen 76 DKKKKSIKIDQIR-EIIEFLSLSPSEGKYKVIIIDEADKL-------------TEEAQNALLKTLEEPPENTYFILITNN 141 (162)
T ss_dssp TTSSSSBSHHHHH-HHHHHCTSS-TTSSSEEEEEETGGGS--------------HHHHHHHHHHHHSTTTTEEEEEEES-
T ss_pred ccccchhhHHHHH-HHHHHHHHHHhcCCceEEEeehHhhh-------------hHHHHHHHHHHhcCCCCCEEEEEEECC
Confidence 433 3444443 5555554332210 111211 234455555555555568888888887
Q ss_pred hH-HHHhh-CCCceEeccCC
Q 039990 214 MD-VALKM-GSGKNYELKHL 231 (1217)
Q Consensus 214 ~~-v~~~~-~~~~~~~l~~l 231 (1217)
.. +.... .....+.+.++
T Consensus 142 ~~~il~TI~SRc~~i~~~~l 161 (162)
T PF13177_consen 142 PSKILPTIRSRCQVIRFRPL 161 (162)
T ss_dssp GGGS-HHHHTTSEEEEE---
T ss_pred hHHChHHHHhhceEEecCCC
Confidence 54 22222 22345555544
No 225
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.36 E-value=0.063 Score=49.88 Aligned_cols=41 Identities=27% Similarity=0.157 Sum_probs=29.4
Q ss_pred hhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhcc
Q 039990 86 EDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDK 130 (1217)
Q Consensus 86 ~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 130 (1217)
++.+++.+.+...-. .-.+|.+.|.-|.||||+++.+++..
T Consensus 6 ~~t~~l~~~l~~~l~----~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 6 KAMDKFGKAFAKPLD----FGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHHhCC----CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 445555555544321 12589999999999999999998763
No 226
>PRK06547 hypothetical protein; Provisional
Probab=94.35 E-value=0.059 Score=53.32 Aligned_cols=26 Identities=31% Similarity=0.387 Sum_probs=23.1
Q ss_pred CCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 104 ANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 104 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
....+|+|.|.+|+||||+|+.+.+.
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45689999999999999999998875
No 227
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=94.30 E-value=0.032 Score=53.80 Aligned_cols=22 Identities=41% Similarity=0.558 Sum_probs=19.8
Q ss_pred EEEEEccCCchHHHHHHHHHhc
Q 039990 108 VIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 108 vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
+|.++|++|+||||+|+++...
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999998865
No 228
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=94.29 E-value=0.046 Score=52.69 Aligned_cols=39 Identities=31% Similarity=0.268 Sum_probs=28.3
Q ss_pred EEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDD 146 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~ 146 (1217)
..+.|+|.+|+||||+|+.++... ......++++..+..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~-~~~~~~~~~~~~~~~ 41 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALAREL-GPPGGGVIYIDGEDI 41 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhcc-CCCCCCEEEECCEEc
Confidence 578999999999999999998863 332234566655443
No 229
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.27 E-value=0.13 Score=52.74 Aligned_cols=166 Identities=12% Similarity=0.112 Sum_probs=91.9
Q ss_pred cccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhcccc-----CCCCCeEEEEeCCc---------
Q 039990 81 VYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLT-----DDFKPKAWVCVSDD--------- 146 (1217)
Q Consensus 81 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-----~~F~~~~wv~~~~~--------- 146 (1217)
..++++...++...... .+..-..++|+.|.||-|.+..+.++.+. -.-+..-|.+-+..
T Consensus 15 l~~~~e~~~~Lksl~~~------~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS 88 (351)
T KOG2035|consen 15 LIYHEELANLLKSLSST------GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSS 88 (351)
T ss_pred cccHHHHHHHHHHhccc------CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecc
Confidence 56676666666665542 33567789999999999988877765311 12234455543322
Q ss_pred -c-----------cHHHHHHHHHHHhhcCCCC------------CCChhHHHHHHHHHHHhcCcCHHHHHHhhcccCCCC
Q 039990 147 -F-----------DILRISKAILESITRSSCG------------LTDLNSVQLKLKEAVFKKNKSYELWQALKSPFMAGA 202 (1217)
Q Consensus 147 -~-----------~~~~~~~~i~~~l~~~~~~------------~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~ 202 (1217)
. .-+.+.++|++++.....- ..+.+++.. +.-..++.....-.
T Consensus 89 ~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~-------------dAQ~aLRRTMEkYs 155 (351)
T KOG2035|consen 89 NYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTR-------------DAQHALRRTMEKYS 155 (351)
T ss_pred cceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhH-------------HHHHHHHHHHHHHh
Confidence 1 1234555566555433210 011111111 12222333233334
Q ss_pred CCcEEEEE----cCchHHHHhhCCCceEeccCCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhccCCc
Q 039990 203 PGSRIIVT----TRSMDVALKMGSGKNYELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGLP 271 (1217)
Q Consensus 203 ~gs~ilvT----tR~~~v~~~~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 271 (1217)
..+|+|+. ||.-..-+ ...-.+++...+++|-...+++.+-..+ . .--.+++.+|+++++|.-
T Consensus 156 ~~~RlIl~cns~SriIepIr--SRCl~iRvpaps~eeI~~vl~~v~~kE~-l---~lp~~~l~rIa~kS~~nL 222 (351)
T KOG2035|consen 156 SNCRLILVCNSTSRIIEPIR--SRCLFIRVPAPSDEEITSVLSKVLKKEG-L---QLPKELLKRIAEKSNRNL 222 (351)
T ss_pred cCceEEEEecCcccchhHHh--hheeEEeCCCCCHHHHHHHHHHHHHHhc-c---cCcHHHHHHHHHHhcccH
Confidence 56676663 33322211 1224788999999999999988764322 1 112678999999988754
No 230
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=94.26 E-value=0.16 Score=53.49 Aligned_cols=26 Identities=27% Similarity=0.327 Sum_probs=23.3
Q ss_pred CCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 104 ANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 104 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
....+|+|.|..|.|||||++.+...
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45689999999999999999998875
No 231
>CHL00195 ycf46 Ycf46; Provisional
Probab=94.24 E-value=0.31 Score=56.89 Aligned_cols=51 Identities=24% Similarity=0.264 Sum_probs=33.2
Q ss_pred CccccchhhHHHHHHHHhc---CC-CCCCCCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 79 PAVYGRNEDKARILDMVLK---ND-PSDAANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~---~~-~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.++.|.+..++.+.+.... .. .-+-..++-|.++|++|.|||.+|+++++.
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e 282 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIAND 282 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 4577777666555543211 00 000033567889999999999999999886
No 232
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=94.24 E-value=0.049 Score=52.17 Aligned_cols=35 Identities=34% Similarity=0.258 Sum_probs=26.3
Q ss_pred EEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEE
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVC 142 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~ 142 (1217)
.+|-|+|.+|.||||||+++.++ ....-..+.+++
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~-L~~~g~~~~~LD 37 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERR-LFARGIKVYLLD 37 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHH-HHHTTS-EEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHH-HHHcCCcEEEec
Confidence 68999999999999999999887 333334455554
No 233
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.22 E-value=0.3 Score=58.51 Aligned_cols=187 Identities=14% Similarity=0.101 Sum_probs=94.5
Q ss_pred CccccchhhHHHH---HHHHhcCCC---CCCCCcEEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCcccH---
Q 039990 79 PAVYGRNEDKARI---LDMVLKNDP---SDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDFDI--- 149 (1217)
Q Consensus 79 ~~~vGr~~~~~~l---~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~~~~--- 149 (1217)
.++.|-|+..++| ++.|..+.. -+..-++=|-++|++|.|||-||++++-.. .+-|++++...=+
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA------gVPF~svSGSEFvE~~ 384 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA------GVPFFSVSGSEFVEMF 384 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc------CCceeeechHHHHHHh
Confidence 4688887655554 555543311 011345778899999999999999999762 2234444322100
Q ss_pred ----HHHHHHHHHHhhcCCC---CCCChhHHHHHHHH-HHHhc-CcCHHHHHHhhcccCCCC--CCcEEEEEcCchHHHH
Q 039990 150 ----LRISKAILESITRSSC---GLTDLNSVQLKLKE-AVFKK-NKSYELWQALKSPFMAGA--PGSRIIVTTRSMDVAL 218 (1217)
Q Consensus 150 ----~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~-~l~~~-~~~~~~~~~l~~~~~~~~--~gs~ilvTtR~~~v~~ 218 (1217)
..-.+++........+ -.++++.....-.. ...+. .......+++..-+..+. .+--++-+|+..++..
T Consensus 385 ~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld 464 (774)
T KOG0731|consen 385 VGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILD 464 (774)
T ss_pred cccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccC
Confidence 1111222222211111 01122211111100 01011 111223444443333322 3334455666655532
Q ss_pred hh-----CCCceEeccCCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhccCCchhHH
Q 039990 219 KM-----GSGKNYELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGLPLAAR 275 (1217)
Q Consensus 219 ~~-----~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 275 (1217)
.. .-++.+.++.-+..+..++|..++-... ...+..++++ |+...-|.+=|..
T Consensus 465 ~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~---~~~e~~dl~~-~a~~t~gf~gadl 522 (774)
T KOG0731|consen 465 PALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKK---LDDEDVDLSK-LASLTPGFSGADL 522 (774)
T ss_pred HHhcCCCccccceeccCCchhhhHHHHHHHhhccC---CCcchhhHHH-HHhcCCCCcHHHH
Confidence 22 2346888998999999999999984322 2234455666 8888888875543
No 234
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=94.22 E-value=0.1 Score=54.99 Aligned_cols=43 Identities=14% Similarity=0.162 Sum_probs=33.2
Q ss_pred cEEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCcccHH
Q 039990 106 FRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDFDIL 150 (1217)
Q Consensus 106 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~~~~~ 150 (1217)
-.++.|+|.+|+|||++|.+++.. ....-..++||+.. .++..
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~-~~~~~~~v~yi~~e-~~~~~ 65 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVE-AAKNGKKVIYIDTE-GLSPE 65 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH-HHHCCCeEEEEECC-CCCHH
Confidence 379999999999999999998876 33334678899876 45443
No 235
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=94.22 E-value=1.8 Score=48.50 Aligned_cols=92 Identities=12% Similarity=0.057 Sum_probs=60.4
Q ss_pred CCcEEEEEcCchHHHHhh----C--CCceEeccCCChHHHHHHHHHHHhCCCCC------------CC----CCchhhHH
Q 039990 203 PGSRIIVTTRSMDVALKM----G--SGKNYELKHLSDDDCWSVFLNHAFEGIDT------------GT----QGNFESTR 260 (1217)
Q Consensus 203 ~gs~ilvTtR~~~v~~~~----~--~~~~~~l~~l~~~~~~~lf~~~~~~~~~~------------~~----~~~~~~~~ 260 (1217)
+-..||++|-+......+ . .-+.+.+...+.+.|.++...+....... .. ........
T Consensus 182 nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el 261 (431)
T PF10443_consen 182 NIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAEL 261 (431)
T ss_pred CccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhcccccccccccccccccccccccccccchHHH
Confidence 345688888775544332 1 23578899999999999999887432110 00 01234456
Q ss_pred HHHHHhccCCchhHHHHHHHhhcCCCh-hHHHHHH
Q 039990 261 QRVVAKCKGLPLAARALGGLLRSKQRV-DEWRAIL 294 (1217)
Q Consensus 261 ~~i~~~~~g~PLai~~~~~~l~~~~~~-~~w~~~~ 294 (1217)
...++.+||==.-+..+++.++....+ +...++.
T Consensus 262 d~~i~~LGGRltDLe~lvrRiksGe~p~~Av~~iI 296 (431)
T PF10443_consen 262 DECIEPLGGRLTDLEFLVRRIKSGESPEEAVEEII 296 (431)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 678889999999999999999876553 3344443
No 236
>PHA00729 NTP-binding motif containing protein
Probab=94.20 E-value=0.061 Score=54.91 Aligned_cols=25 Identities=40% Similarity=0.490 Sum_probs=21.9
Q ss_pred CcEEEEEEccCCchHHHHHHHHHhc
Q 039990 105 NFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 105 ~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
+...|.|+|.+|+||||||.++.++
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 3457889999999999999999876
No 237
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=94.19 E-value=0.12 Score=54.06 Aligned_cols=41 Identities=22% Similarity=0.178 Sum_probs=30.8
Q ss_pred cEEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCcc
Q 039990 106 FRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDF 147 (1217)
Q Consensus 106 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~~ 147 (1217)
-.++.|+|.+|+||||+|.+++... ...=..++|++....+
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~~~-~~~g~~v~yi~~e~~~ 59 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAVET-AGQGKKVAYIDTEGLS 59 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH-HhcCCeEEEEECCCCC
Confidence 3799999999999999999988763 2222457788765554
No 238
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.15 E-value=0.041 Score=56.89 Aligned_cols=26 Identities=35% Similarity=0.529 Sum_probs=22.8
Q ss_pred CCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 104 ANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 104 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
+...+|+|+|.+|+||||||+.+...
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 34479999999999999999998865
No 239
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=94.14 E-value=0.07 Score=64.03 Aligned_cols=76 Identities=13% Similarity=0.097 Sum_probs=56.4
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCcccHHHHHHHHH
Q 039990 78 EPAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDFDILRISKAIL 157 (1217)
Q Consensus 78 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 157 (1217)
-.+++|.++.++.+...+... +.+.++|.+|.||||+|+.+.+......++..+|..- ...+...+++.++
T Consensus 30 ~~~vigq~~a~~~L~~~~~~~--------~~~l~~G~~G~GKttla~~l~~~l~~~~~~~~~~~~n-p~~~~~~~~~~v~ 100 (637)
T PRK13765 30 IDQVIGQEHAVEVIKKAAKQR--------RHVMMIGSPGTGKSMLAKAMAELLPKEELQDILVYPN-PEDPNNPKIRTVP 100 (637)
T ss_pred HHHcCChHHHHHHHHHHHHhC--------CeEEEECCCCCcHHHHHHHHHHHcChHhHHHheEeeC-CCcchHHHHHHHH
Confidence 356899988888887766542 3688999999999999999887534445678888765 4446777777777
Q ss_pred HHhhc
Q 039990 158 ESITR 162 (1217)
Q Consensus 158 ~~l~~ 162 (1217)
.+++.
T Consensus 101 ~~~G~ 105 (637)
T PRK13765 101 AGKGK 105 (637)
T ss_pred HhcCH
Confidence 66654
No 240
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=94.12 E-value=0.067 Score=58.24 Aligned_cols=49 Identities=22% Similarity=0.285 Sum_probs=36.9
Q ss_pred cEEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCcccHHHHHHH
Q 039990 106 FRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDFDILRISKA 155 (1217)
Q Consensus 106 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 155 (1217)
.+++.+.|.|||||||+|.+.+-...... ..++-|+.....++.+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g-~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESG-KKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcC-CcEEEEEeCCCCchHhhhcc
Confidence 37899999999999999998665532233 55778888777777776664
No 241
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=94.11 E-value=0.21 Score=53.80 Aligned_cols=25 Identities=24% Similarity=0.276 Sum_probs=21.6
Q ss_pred CCcEEEEEEccCCchHHHHHHHHHh
Q 039990 104 ANFRVIPLVGMGGIGKTTLAQEVYN 128 (1217)
Q Consensus 104 ~~~~vv~I~G~gGiGKTtLA~~v~~ 128 (1217)
..+.+|||.|..|+||||+|+.+..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ 84 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQA 84 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4568999999999999999987654
No 242
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=94.09 E-value=0.036 Score=52.54 Aligned_cols=21 Identities=48% Similarity=0.517 Sum_probs=19.5
Q ss_pred EEEEccCCchHHHHHHHHHhc
Q 039990 109 IPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 109 v~I~G~gGiGKTtLA~~v~~~ 129 (1217)
|.|+|.+|+|||++|+.++++
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 568999999999999999987
No 243
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=94.09 E-value=0.12 Score=54.89 Aligned_cols=46 Identities=20% Similarity=0.194 Sum_probs=34.5
Q ss_pred cEEEEEEccCCchHHHHHHHHHhcc-ccCC----CCCeEEEEeCCcccHHH
Q 039990 106 FRVIPLVGMGGIGKTTLAQEVYNDK-LTDD----FKPKAWVCVSDDFDILR 151 (1217)
Q Consensus 106 ~~vv~I~G~gGiGKTtLA~~v~~~~-~~~~----F~~~~wv~~~~~~~~~~ 151 (1217)
-.++.|+|.+|+|||++|.+++... .... -..++|++....++...
T Consensus 19 g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~r 69 (235)
T cd01123 19 GSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPER 69 (235)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHH
Confidence 3799999999999999999987542 2221 35789999877666443
No 244
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.07 E-value=0.058 Score=51.24 Aligned_cols=39 Identities=23% Similarity=0.325 Sum_probs=29.1
Q ss_pred EEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCC
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSD 145 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~ 145 (1217)
++|.|+|..|+|||||++.+.+...+..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEEccC
Confidence 489999999999999999999875556676666666554
No 245
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.06 E-value=0.13 Score=53.34 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=20.1
Q ss_pred EEEEEccCCchHHHHHHHHHhc
Q 039990 108 VIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 108 vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
+|+|.|.+|+||||+|+.+...
T Consensus 1 IigI~G~sGSGKTTla~~L~~~ 22 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQAL 22 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHH
Confidence 5899999999999999998875
No 246
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=94.02 E-value=0.18 Score=47.55 Aligned_cols=37 Identities=27% Similarity=0.397 Sum_probs=30.0
Q ss_pred EEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEe
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCV 143 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~ 143 (1217)
--+.|+|-||+||+++.+.+|.-.....|...+||+.
T Consensus 21 iK~vivGng~VGKssmiqryCkgifTkdykktIgvdf 57 (246)
T KOG4252|consen 21 IKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDF 57 (246)
T ss_pred EEEEEECCCccchHHHHHHHhccccccccccccchhh
Confidence 3467999999999999999886545667778888864
No 247
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=94.00 E-value=0.28 Score=56.11 Aligned_cols=118 Identities=18% Similarity=0.236 Sum_probs=66.4
Q ss_pred EEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCcc-cHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhcCc
Q 039990 108 VIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDF-DILRISKAILESITRSSCGLTDLNSVQLKLKEAVFKKNK 186 (1217)
Q Consensus 108 vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 186 (1217)
++.|.|+=++||||+++.+... ..+. .+++...+.. +-.++ .+........... .-.-.+.+.+.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~-~~~~---~iy~~~~d~~~~~~~l-~d~~~~~~~~~~~---------~~~yifLDEIq 104 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKG-LLEE---IIYINFDDLRLDRIEL-LDLLRAYIELKER---------EKSYIFLDEIQ 104 (398)
T ss_pred EEEEECCccccHHHHHHHHHhh-CCcc---eEEEEecchhcchhhH-HHHHHHHHHhhcc---------CCceEEEeccc
Confidence 9999999999999999776554 2222 5555433322 11111 1211111110000 00001122255
Q ss_pred CHHHHHHhhcccCCCCCCcEEEEEcCchHHH-----Hhh-CCCceEeccCCChHHHHHHH
Q 039990 187 SYELWQALKSPFMAGAPGSRIIVTTRSMDVA-----LKM-GSGKNYELKHLSDDDCWSVF 240 (1217)
Q Consensus 187 ~~~~~~~l~~~~~~~~~gs~ilvTtR~~~v~-----~~~-~~~~~~~l~~l~~~~~~~lf 240 (1217)
....|+.....+.+.++. +|++|+-+.... ... |....+++-||+..|...+-
T Consensus 105 ~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~ 163 (398)
T COG1373 105 NVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLK 163 (398)
T ss_pred CchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhc
Confidence 667788877666665555 888888775542 222 33468899999999976654
No 248
>PRK04040 adenylate kinase; Provisional
Probab=94.00 E-value=0.043 Score=55.34 Aligned_cols=23 Identities=30% Similarity=0.642 Sum_probs=21.3
Q ss_pred EEEEEEccCCchHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
++|+|+|++|+||||+++.+.+.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~ 25 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEK 25 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 68999999999999999998875
No 249
>PRK03839 putative kinase; Provisional
Probab=93.95 E-value=0.041 Score=55.55 Aligned_cols=22 Identities=32% Similarity=0.632 Sum_probs=20.3
Q ss_pred EEEEEccCCchHHHHHHHHHhc
Q 039990 108 VIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 108 vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.|.|.|++|+||||+|+++++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999886
No 250
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=93.91 E-value=0.075 Score=53.29 Aligned_cols=41 Identities=27% Similarity=0.405 Sum_probs=28.8
Q ss_pred EEEEEccCCchHHHHHHHHHhcc-ccCCCCCeEEEEeCCcccH
Q 039990 108 VIPLVGMGGIGKTTLAQEVYNDK-LTDDFKPKAWVCVSDDFDI 149 (1217)
Q Consensus 108 vv~I~G~gGiGKTtLA~~v~~~~-~~~~F~~~~wv~~~~~~~~ 149 (1217)
.|+|+|-||+||||+|..+.... -++.|+ +.-|++..++++
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~-VLvVDaDpd~nL 43 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYN-VLVVDADPDSNL 43 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCce-EEEEeCCCCCCh
Confidence 58999999999999999866554 233343 555666666543
No 251
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=93.86 E-value=0.043 Score=54.30 Aligned_cols=24 Identities=46% Similarity=0.535 Sum_probs=22.0
Q ss_pred cEEEEEEccCCchHHHHHHHHHhc
Q 039990 106 FRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 106 ~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
..+|+|-||=|+||||||+.+.++
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~ 27 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEH 27 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHH
Confidence 368999999999999999998886
No 252
>PRK14974 cell division protein FtsY; Provisional
Probab=93.85 E-value=0.22 Score=54.91 Aligned_cols=59 Identities=19% Similarity=0.155 Sum_probs=35.3
Q ss_pred CCcEEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCC-cccHHHHHHHHHHHhhcC
Q 039990 104 ANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSD-DFDILRISKAILESITRS 163 (1217)
Q Consensus 104 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~~ 163 (1217)
.++.+|+++|++|+||||++..++.......+ .++.+.... .....+-++..++.++.+
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~-~V~li~~Dt~R~~a~eqL~~~a~~lgv~ 197 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYLKKNGF-SVVIAAGDTFRAGAIEQLEEHAERLGVK 197 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCC-eEEEecCCcCcHHHHHHHHHHHHHcCCc
Confidence 34689999999999999988887765222333 233444321 112333445566666543
No 253
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=93.84 E-value=0.35 Score=60.65 Aligned_cols=51 Identities=31% Similarity=0.316 Sum_probs=37.1
Q ss_pred CccccchhhHHHHHHHHhcCCCC-------CCCCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 79 PAVYGRNEDKARILDMVLKNDPS-------DAANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.++.|.++.++++.+.+...-.. +-...+-|.++|.+|+|||++|+++++.
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~ 235 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANE 235 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHH
Confidence 45889999998888776421000 0023367889999999999999999876
No 254
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=93.83 E-value=0.17 Score=56.48 Aligned_cols=82 Identities=16% Similarity=0.289 Sum_probs=47.9
Q ss_pred CCccccchhhHHHHHHHHhcC--------CCCCCCCcEEEEEEccCCchHHHHHHHHHhccccCCC---CCeEEEEeC-C
Q 039990 78 EPAVYGRNEDKARILDMVLKN--------DPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDF---KPKAWVCVS-D 145 (1217)
Q Consensus 78 ~~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F---~~~~wv~~~-~ 145 (1217)
+..+||.++.+..+...+... +..+...++-|.++|++|+|||++|++++.. ....| +..-|+..+ .
T Consensus 11 d~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~-l~~~fi~vdat~~~e~g~v 89 (441)
T TIGR00390 11 DKYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKL-ANAPFIKVEATKFTEVGYV 89 (441)
T ss_pred hhhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHH-hCCeEEEeecceeecCCcc
Confidence 345888888877776555431 0000023467889999999999999999876 33333 222222211 2
Q ss_pred cccHHHHHHHHHHHh
Q 039990 146 DFDILRISKAILESI 160 (1217)
Q Consensus 146 ~~~~~~~~~~i~~~l 160 (1217)
..+..++++.+.+..
T Consensus 90 G~dvE~i~r~l~e~A 104 (441)
T TIGR00390 90 GRDVESMVRDLTDAA 104 (441)
T ss_pred cCCHHHHHHHHHHHH
Confidence 235555555554444
No 255
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.81 E-value=0.036 Score=56.54 Aligned_cols=37 Identities=27% Similarity=0.150 Sum_probs=19.7
Q ss_pred ccccCcEEecccc--cccccccccccccccccEEeecCC
Q 039990 513 SLFNLEILILSYC--WCLLKLPSSIGNLVNLHHLDIEGA 549 (1217)
Q Consensus 513 ~L~~L~~L~L~~~--~~l~~lp~~i~~L~~L~~L~l~~~ 549 (1217)
.|++|++|.++.| +....++--..++++|++|++++|
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N 101 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN 101 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCC
Confidence 4556666666655 223333333344466666666666
No 256
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=93.80 E-value=0.059 Score=50.75 Aligned_cols=47 Identities=17% Similarity=0.228 Sum_probs=32.4
Q ss_pred cEEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCcccHHHHHHHHHHHhhcC
Q 039990 106 FRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDFDILRISKAILESITRS 163 (1217)
Q Consensus 106 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 163 (1217)
.++|+|+|.+|+||||+.+.+....+..+ -.+..++.-+++...+..
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l~~~~-----------ivNyG~~Mle~A~k~glv 50 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKELVKHK-----------IVNYGDLMLEIAKKKGLV 50 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHHhhce-----------eeeHhHHHHHHHHHhCCc
Confidence 58999999999999999988665411111 124556667777776654
No 257
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.79 E-value=0.16 Score=56.62 Aligned_cols=69 Identities=16% Similarity=0.101 Sum_probs=41.7
Q ss_pred cEEEEEEccCCchHHHHHHHHHhcc-ccCCCCCeEEEEeCC-cccHHHHHHHHHHHhhcCCCCCCChhHHH
Q 039990 106 FRVIPLVGMGGIGKTTLAQEVYNDK-LTDDFKPKAWVCVSD-DFDILRISKAILESITRSSCGLTDLNSVQ 174 (1217)
Q Consensus 106 ~~vv~I~G~gGiGKTtLA~~v~~~~-~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 174 (1217)
-.+++++|+.|+||||++.++.... .+.....+..|+... .....+-++...+.++.+.....+..++.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~ 207 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQ 207 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHH
Confidence 4699999999999999999988763 222223455565332 22344555556666665443333333333
No 258
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=93.75 E-value=0.026 Score=53.90 Aligned_cols=44 Identities=18% Similarity=0.244 Sum_probs=30.0
Q ss_pred ccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 82 YGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 82 vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
||+-..+.++.+.+..-. .....|.|+|..|+||+++|+.++..
T Consensus 1 vG~S~~~~~l~~~l~~~a----~~~~pvli~GE~GtGK~~~A~~lh~~ 44 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLA----KSSSPVLITGEPGTGKSLLARALHRY 44 (138)
T ss_dssp --SCHHHHHHHHHHHHHH----CSSS-EEEECCTTSSHHHHHHCCHHT
T ss_pred CCCCHHHHHHHHHHHHHh----CCCCcEEEEcCCCCCHHHHHHHHHhh
Confidence 566666777766665432 11246789999999999999988775
No 259
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=93.72 E-value=0.17 Score=54.90 Aligned_cols=40 Identities=30% Similarity=0.312 Sum_probs=28.2
Q ss_pred CcEEEEEEccCCchHHHHHHHHHhccccC-CCCCeEEEEeC
Q 039990 105 NFRVIPLVGMGGIGKTTLAQEVYNDKLTD-DFKPKAWVCVS 144 (1217)
Q Consensus 105 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-~F~~~~wv~~~ 144 (1217)
..++++|+|.+|+||||++..++...... .-..+..|+..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D 233 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTD 233 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECC
Confidence 45799999999999999999987653222 21245566644
No 260
>PRK00625 shikimate kinase; Provisional
Probab=93.72 E-value=0.046 Score=54.09 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=19.9
Q ss_pred EEEEEccCCchHHHHHHHHHhc
Q 039990 108 VIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 108 vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.|.|+||+|+||||+|+.+.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~ 23 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKF 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998876
No 261
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=93.70 E-value=0.041 Score=49.66 Aligned_cols=21 Identities=52% Similarity=0.703 Sum_probs=18.8
Q ss_pred EEEEccCCchHHHHHHHHHhc
Q 039990 109 IPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 109 v~I~G~gGiGKTtLA~~v~~~ 129 (1217)
|-|+|.+|+|||++|+.++.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999998876
No 262
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=93.69 E-value=0.17 Score=53.32 Aligned_cols=45 Identities=20% Similarity=0.165 Sum_probs=33.7
Q ss_pred cEEEEEEccCCchHHHHHHHHHhccccCCC------CCeEEEEeCCcccHHH
Q 039990 106 FRVIPLVGMGGIGKTTLAQEVYNDKLTDDF------KPKAWVCVSDDFDILR 151 (1217)
Q Consensus 106 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F------~~~~wv~~~~~~~~~~ 151 (1217)
-.++.|+|.+|+|||++|.+++... ...- ..++|++....++...
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~-~~~~~~~g~~~~v~yi~~e~~~~~~r 69 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEA-QLPGELGGLEGKVVYIDTEGAFRPER 69 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHh-hcccccCCCcceEEEEecCCCCCHHH
Confidence 3799999999999999999987652 2223 4678988776665443
No 263
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=93.62 E-value=0.16 Score=56.62 Aligned_cols=52 Identities=19% Similarity=0.344 Sum_probs=37.6
Q ss_pred CCccccchhhHHHHHHHHhcC--------CCCCCCCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 78 EPAVYGRNEDKARILDMVLKN--------DPSDAANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 78 ~~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
+..++|.++.+..+..++... ........+.|.++|++|+|||++|+.+...
T Consensus 14 d~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~ 73 (443)
T PRK05201 14 DKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKL 73 (443)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 345899998888887777431 0000012467899999999999999998876
No 264
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=93.60 E-value=0.44 Score=59.86 Aligned_cols=51 Identities=25% Similarity=0.216 Sum_probs=35.5
Q ss_pred CccccchhhHHHHHHHHhcCCCC-------CCCCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 79 PAVYGRNEDKARILDMVLKNDPS-------DAANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.++.|.+..+++|.+.+.-.-.. +-...+-|.++|++|.|||++|+++++.
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e 510 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATE 510 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 45778888877777665421000 0023456889999999999999999986
No 265
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.58 E-value=0.28 Score=56.42 Aligned_cols=40 Identities=28% Similarity=0.252 Sum_probs=28.2
Q ss_pred cEEEEEEccCCchHHHHHHHHHhccc-cCCCCCeEEEEeCC
Q 039990 106 FRVIPLVGMGGIGKTTLAQEVYNDKL-TDDFKPKAWVCVSD 145 (1217)
Q Consensus 106 ~~vv~I~G~gGiGKTtLA~~v~~~~~-~~~F~~~~wv~~~~ 145 (1217)
.++++++|++|+||||++..++.... ...-..+..|+...
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~ 261 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDT 261 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCc
Confidence 36999999999999999988776522 23334566676543
No 266
>PRK12608 transcription termination factor Rho; Provisional
Probab=93.55 E-value=0.28 Score=54.14 Aligned_cols=73 Identities=14% Similarity=0.151 Sum_probs=49.7
Q ss_pred hHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhccccCCCCC-eEEEEeCCcc-cHHHHHHHHHHHhhcCC
Q 039990 87 DKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKP-KAWVCVSDDF-DILRISKAILESITRSS 164 (1217)
Q Consensus 87 ~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~-~~wv~~~~~~-~~~~~~~~i~~~l~~~~ 164 (1217)
...++++.+..-..+ +.+.|+|.+|+|||||++.+++.....+-+. ++|+.+.+.. ++.++.+.+...+....
T Consensus 119 ~~~RvID~l~PiGkG-----QR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast 193 (380)
T PRK12608 119 LSMRVVDLVAPIGKG-----QRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYAST 193 (380)
T ss_pred hhHhhhhheeecCCC-----ceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeec
Confidence 344577777654322 4678999999999999999888632223344 4677776654 67888888887666543
No 267
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=93.49 E-value=0.18 Score=50.53 Aligned_cols=55 Identities=31% Similarity=0.279 Sum_probs=37.5
Q ss_pred ccccchhhHHHHHHHHhcCCCC-------CCCCcEEEEEEccCCchHHHHHHHHHhccccCCC
Q 039990 80 AVYGRNEDKARILDMVLKNDPS-------DAANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDF 135 (1217)
Q Consensus 80 ~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F 135 (1217)
++-|.|-..+++.+...-.-.. +-+.++-|.++|++|.|||.||++|+++ ....|
T Consensus 156 diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~-t~a~f 217 (408)
T KOG0727|consen 156 DIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANH-TTAAF 217 (408)
T ss_pred ccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhc-cchhe
Confidence 4566777777776654321100 0144577889999999999999999997 44444
No 268
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=93.48 E-value=0.16 Score=58.24 Aligned_cols=76 Identities=18% Similarity=0.142 Sum_probs=44.0
Q ss_pred hHHHHHHHHhcCCCCC--CCCcEEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCC-cccHHHHHHHHHHHhhcC
Q 039990 87 DKARILDMVLKNDPSD--AANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSD-DFDILRISKAILESITRS 163 (1217)
Q Consensus 87 ~~~~l~~~L~~~~~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~~ 163 (1217)
-.+++.+.+....... ...+.+|.++|.+|+||||+|..++....+..+ .+.-|++.. .....+.++.++++++.+
T Consensus 74 v~~~L~~~l~~~~~~~~~~~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~-kV~lV~~D~~R~aa~eQL~~la~~~gvp 152 (437)
T PRK00771 74 VYEELVKLLGEETEPLVLPLKPQTIMLVGLQGSGKTTTAAKLARYFKKKGL-KVGLVAADTYRPAAYDQLKQLAEKIGVP 152 (437)
T ss_pred HHHHHHHHhCCCccccccCCCCeEEEEECCCCCcHHHHHHHHHHHHHHcCC-eEEEecCCCCCHHHHHHHHHHHHHcCCc
Confidence 3445555554322110 034689999999999999999998875322233 344454432 122344555666666544
No 269
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=93.44 E-value=0.16 Score=51.39 Aligned_cols=22 Identities=36% Similarity=0.425 Sum_probs=19.7
Q ss_pred EEEEEEccCCchHHHHHHHHHh
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYN 128 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~ 128 (1217)
.+|+|+|+.|+||||+|+.+..
T Consensus 3 ~iIglTG~igsGKStva~~~~~ 24 (201)
T COG0237 3 LIIGLTGGIGSGKSTVAKILAE 24 (201)
T ss_pred eEEEEecCCCCCHHHHHHHHHH
Confidence 6899999999999999997554
No 270
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=93.42 E-value=0.062 Score=54.77 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=21.6
Q ss_pred cEEEEEEccCCchHHHHHHHHHhc
Q 039990 106 FRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 106 ~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.++|+|.|++|+||||+|+.+...
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~ 26 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEK 26 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 469999999999999999998865
No 271
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=93.39 E-value=0.055 Score=51.60 Aligned_cols=20 Identities=35% Similarity=0.647 Sum_probs=18.6
Q ss_pred EEEEEccCCchHHHHHHHHH
Q 039990 108 VIPLVGMGGIGKTTLAQEVY 127 (1217)
Q Consensus 108 vv~I~G~gGiGKTtLA~~v~ 127 (1217)
.|+|.|.||+||||+|..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999977
No 272
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=93.36 E-value=2.2 Score=47.51 Aligned_cols=166 Identities=9% Similarity=0.081 Sum_probs=84.2
Q ss_pred hHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhcc-ccCCCC---Ce-----EEEEeCCcccHHHHHHHHH
Q 039990 87 DKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDK-LTDDFK---PK-----AWVCVSDDFDILRISKAIL 157 (1217)
Q Consensus 87 ~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~-~~~~F~---~~-----~wv~~~~~~~~~~~~~~i~ 157 (1217)
.-+++...+..+ .-...+.++|+.|+||+++|.++++.. ....-+ +. -++..+..+|+..+.
T Consensus 10 ~~~~l~~~~~~~-----rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~---- 80 (334)
T PRK07993 10 DYEQLVGSYQAG-----RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLT---- 80 (334)
T ss_pred HHHHHHHHHHcC-----CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEe----
Confidence 345666666554 334688899999999999999987764 221111 00 011112222211100
Q ss_pred HHhhcCCC-CCCChhHHHHHHHHHHHhc----------CcCH-----HHHHHhhcccCCCCCCcEEEEEcCc-hHHHHhh
Q 039990 158 ESITRSSC-GLTDLNSVQLKLKEAVFKK----------NKSY-----ELWQALKSPFMAGAPGSRIIVTTRS-MDVALKM 220 (1217)
Q Consensus 158 ~~l~~~~~-~~~~~~~~~~~l~~~l~~~----------~~~~-----~~~~~l~~~~~~~~~gs~ilvTtR~-~~v~~~~ 220 (1217)
.... ..-..++.. .+.+.+..+ ++.. .....+...+..-..++.+|.+|.+ ..+....
T Consensus 81 ----p~~~~~~I~idqiR-~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI 155 (334)
T PRK07993 81 ----PEKGKSSLGVDAVR-EVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATL 155 (334)
T ss_pred ----cccccccCCHHHHH-HHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHH
Confidence 0000 011122222 122222211 2222 2334444444433456666666655 3344332
Q ss_pred -CCCceEeccCCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhccCCchhHH
Q 039990 221 -GSGKNYELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGLPLAAR 275 (1217)
Q Consensus 221 -~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 275 (1217)
.....+.+.+++.+++.+.+.... + . + .+.+..++..++|.|....
T Consensus 156 rSRCq~~~~~~~~~~~~~~~L~~~~-~---~--~---~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 156 RSRCRLHYLAPPPEQYALTWLSREV-T---M--S---QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred HhccccccCCCCCHHHHHHHHHHcc-C---C--C---HHHHHHHHHHcCCCHHHHH
Confidence 333578999999999888876542 1 1 1 2346788999999996443
No 273
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=93.30 E-value=0.054 Score=54.14 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=20.1
Q ss_pred EEEEEccCCchHHHHHHHHHhc
Q 039990 108 VIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 108 vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
+|+|.|.+|.||||+|+.+...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998875
No 274
>PRK10865 protein disaggregation chaperone; Provisional
Probab=93.30 E-value=1.1 Score=56.73 Aligned_cols=51 Identities=22% Similarity=0.330 Sum_probs=37.8
Q ss_pred CccccchhhHHHHHHHHhcCCC---CCCCCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 79 PAVYGRNEDKARILDMVLKNDP---SDAANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
..++|.+..++.+...+..... .+.....++.++|+.|+|||++|+.+++.
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~ 621 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANF 621 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 3588999998888888764321 11022357889999999999999998865
No 275
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.21 E-value=0.29 Score=56.45 Aligned_cols=38 Identities=32% Similarity=0.265 Sum_probs=26.8
Q ss_pred cEEEEEEccCCchHHHHHHHHHhccccCC-CCCeEEEEe
Q 039990 106 FRVIPLVGMGGIGKTTLAQEVYNDKLTDD-FKPKAWVCV 143 (1217)
Q Consensus 106 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~-F~~~~wv~~ 143 (1217)
-.+|+|+|.+|+||||++..++......+ ...+..++.
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdt 388 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTT 388 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEec
Confidence 47999999999999999988876532221 234555554
No 276
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=93.19 E-value=0.11 Score=56.30 Aligned_cols=52 Identities=25% Similarity=0.356 Sum_probs=43.5
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 78 EPAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 78 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
..+|+|.++.++++++.+.....+.+.+-+++.+.|+.|.||||||..+-+-
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~ 111 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRG 111 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999997765443356689999999999999999987654
No 277
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=93.17 E-value=0.14 Score=52.82 Aligned_cols=62 Identities=19% Similarity=0.203 Sum_probs=36.3
Q ss_pred hHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhccccCCCC-CeEEEEeCCcccHHHH
Q 039990 87 DKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDFK-PKAWVCVSDDFDILRI 152 (1217)
Q Consensus 87 ~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~-~~~wv~~~~~~~~~~~ 152 (1217)
+..++++.+.... ....+|+|.|.||+||+||.-++.....+.... +++=|+-+.+++--.+
T Consensus 14 ~~~~ll~~l~~~~----g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAl 76 (266)
T PF03308_consen 14 EARELLKRLYPHT----GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGAL 76 (266)
T ss_dssp HHHHHHHHHGGGT----T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---S
T ss_pred HHHHHHHHHHhhc----CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcc
Confidence 4556667666543 345899999999999999999887763222222 3444555555543333
No 278
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.15 E-value=0.21 Score=54.94 Aligned_cols=72 Identities=17% Similarity=0.210 Sum_probs=43.0
Q ss_pred CCcEEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCcc-cHHHHHHHHHHHhhcCCCCCCChhHHHHH
Q 039990 104 ANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDF-DILRISKAILESITRSSCGLTDLNSVQLK 176 (1217)
Q Consensus 104 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 176 (1217)
.+.++++|+|+.|+||||++..++....... ..+.+|++.... ...+-++..++.++.+.....+.+++...
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g-~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~a 276 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQN-RTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEA 276 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcC-CeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHH
Confidence 3458999999999999999999886532222 346667664332 23344455555555443333444444333
No 279
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=93.07 E-value=0.81 Score=48.66 Aligned_cols=161 Identities=18% Similarity=0.213 Sum_probs=86.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhc--cccCCCCCeEEEEeCCcc-----cHHH
Q 039990 79 PAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYND--KLTDDFKPKAWVCVSDDF-----DILR 151 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~--~~~~~F~~~~wv~~~~~~-----~~~~ 151 (1217)
..++|-.++..++-+++...... ++..-|.|+|+.|.|||+|...+..+ .+.++| +-|...... .+..
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~--gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~---l~v~Lng~~~~dk~al~~ 98 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILH--GESNSVIIIGPRGSGKTILIDTRLSDIQENGENF---LLVRLNGELQTDKIALKG 98 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHh--cCCCceEEEccCCCCceEeeHHHHhhHHhcCCeE---EEEEECccchhhHHHHHH
Confidence 45888888888887777543211 12235778999999999998877665 133333 334433322 2333
Q ss_pred HHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhc--------CcCHHHHHHhh---------cccC----CCCCCcEEEEE
Q 039990 152 ISKAILESITRSSCGLTDLNSVQLKLKEAVFKK--------NKSYELWQALK---------SPFM----AGAPGSRIIVT 210 (1217)
Q Consensus 152 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~--------~~~~~~~~~l~---------~~~~----~~~~gs~ilvT 210 (1217)
+.+++..++...........+....+...+..+ +.-.+++|.+. ..|. ...|-+-|-+|
T Consensus 99 I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~T 178 (408)
T KOG2228|consen 99 ITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVT 178 (408)
T ss_pred HHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEee
Confidence 444444444433333334444455555555544 11112222111 1111 12456677889
Q ss_pred cCchHH-------HHhhCCCceEeccCCChHHHHHHHHHHH
Q 039990 211 TRSMDV-------ALKMGSGKNYELKHLSDDDCWSVFLNHA 244 (1217)
Q Consensus 211 tR~~~v-------~~~~~~~~~~~l~~l~~~~~~~lf~~~~ 244 (1217)
||-.-. -.++.-..++-++.++-++..+++++..
T Consensus 179 trld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 179 TRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred ccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 996432 2222222356677788888888887765
No 280
>PF13245 AAA_19: Part of AAA domain
Probab=93.05 E-value=0.19 Score=41.64 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=17.7
Q ss_pred EEEEEEccCCchHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
+++.|.|.+|.|||+++.+....
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~ 33 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAE 33 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47888999999999666555544
No 281
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=93.04 E-value=0.095 Score=51.75 Aligned_cols=22 Identities=23% Similarity=0.363 Sum_probs=19.9
Q ss_pred EEEEEccCCchHHHHHHHHHhc
Q 039990 108 VIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 108 vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
++.|.|.+|.|||++|..+...
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~ 24 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQ 24 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHH
Confidence 6889999999999999998765
No 282
>PRK00131 aroK shikimate kinase; Reviewed
Probab=93.01 E-value=0.074 Score=53.45 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=21.7
Q ss_pred cEEEEEEccCCchHHHHHHHHHhc
Q 039990 106 FRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 106 ~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
...|.|+|++|+||||+|++++..
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~ 27 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKR 27 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Confidence 358999999999999999999876
No 283
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=92.98 E-value=0.12 Score=62.38 Aligned_cols=50 Identities=26% Similarity=0.494 Sum_probs=38.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhccccCC
Q 039990 79 PAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTDD 134 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~ 134 (1217)
+.++||++|+.++++.|.....+. . .++|.+|||||++|.-++.+.+.+.
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~KNN----P--vLiGEpGVGKTAIvEGLA~rIv~g~ 219 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTKNN----P--VLVGEPGVGKTAIVEGLAQRIVNGD 219 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCCCC----C--eEecCCCCCHHHHHHHHHHHHhcCC
Confidence 458999999999999998765432 2 3579999999999988777643333
No 284
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=92.94 E-value=0.23 Score=58.16 Aligned_cols=55 Identities=22% Similarity=0.330 Sum_probs=42.7
Q ss_pred CCcEEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCcccHHHHHHHHHHHhhc
Q 039990 104 ANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDFDILRISKAILESITR 162 (1217)
Q Consensus 104 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~ 162 (1217)
+.-++..++|++|+||||||.-++++ ..|. ++=|.+|..-+...+-+.|...+..
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkq---aGYs-VvEINASDeRt~~~v~~kI~~avq~ 378 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQ---AGYS-VVEINASDERTAPMVKEKIENAVQN 378 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHh---cCce-EEEecccccccHHHHHHHHHHHHhh
Confidence 44589999999999999999998876 2332 5667888888887777777776644
No 285
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=92.94 E-value=0.063 Score=54.39 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=20.0
Q ss_pred EEEEEccCCchHHHHHHHHHhc
Q 039990 108 VIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 108 vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
+|.|+|++|+||||+|+.++..
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~ 22 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVEN 22 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999998875
No 286
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=92.94 E-value=0.082 Score=52.97 Aligned_cols=22 Identities=41% Similarity=0.662 Sum_probs=20.1
Q ss_pred EEEEEccCCchHHHHHHHHHhc
Q 039990 108 VIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 108 vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
+|+|.|.+|+||||+|+.+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~ 22 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQ 22 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998875
No 287
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=92.90 E-value=0.2 Score=60.58 Aligned_cols=76 Identities=17% Similarity=0.150 Sum_probs=50.3
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCcccHHHHHHHHH
Q 039990 78 EPAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDFDILRISKAIL 157 (1217)
Q Consensus 78 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 157 (1217)
-.+++|.++..+.+...+... +-+.++|++|+||||+|+.+.+......|...+++. ....+..++++.++
T Consensus 17 ~~~viG~~~a~~~l~~a~~~~--------~~~ll~G~pG~GKT~la~~la~~l~~~~~~~~~~~~-n~~~~~~~~~~~v~ 87 (608)
T TIGR00764 17 IDQVIGQEEAVEIIKKAAKQK--------RNVLLIGEPGVGKSMLAKAMAELLPDEELEDILVYP-NPEDPNMPRIVEVP 87 (608)
T ss_pred HhhccCHHHHHHHHHHHHHcC--------CCEEEECCCCCCHHHHHHHHHHHcCchhheeEEEEe-CCCCCchHHHHHHH
Confidence 457899988887777766543 245589999999999999988763333444444333 22234556677777
Q ss_pred HHhhc
Q 039990 158 ESITR 162 (1217)
Q Consensus 158 ~~l~~ 162 (1217)
.+++.
T Consensus 88 ~~~g~ 92 (608)
T TIGR00764 88 AGEGR 92 (608)
T ss_pred Hhhch
Confidence 66654
No 288
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=92.89 E-value=0.87 Score=46.61 Aligned_cols=22 Identities=32% Similarity=0.489 Sum_probs=19.6
Q ss_pred EEEEEEccCCchHHHHHHHHHh
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYN 128 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~ 128 (1217)
..|+|+|+.|.|||||-..+.-
T Consensus 32 e~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 32 EFVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999987764
No 289
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=92.85 E-value=0.078 Score=50.78 Aligned_cols=42 Identities=33% Similarity=0.319 Sum_probs=29.4
Q ss_pred EEEEccCCchHHHHHHHHHhccccCCCCCeE-EEEeCCcccHHHHHHH
Q 039990 109 IPLVGMGGIGKTTLAQEVYNDKLTDDFKPKA-WVCVSDDFDILRISKA 155 (1217)
Q Consensus 109 v~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~-wv~~~~~~~~~~~~~~ 155 (1217)
|.|+|.+|+|||+||+.+++. . +..+ -+.++...+..++...
T Consensus 2 vlL~G~~G~GKt~l~~~la~~-~----~~~~~~i~~~~~~~~~dl~g~ 44 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAAL-L----GRPVIRINCSSDTTEEDLIGS 44 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHH-H----TCEEEEEE-TTTSTHHHHHCE
T ss_pred EEEECCCCCCHHHHHHHHHHH-h----hcceEEEEeccccccccceee
Confidence 678999999999999998876 2 3223 3566666666655543
No 290
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=92.84 E-value=0.12 Score=52.21 Aligned_cols=52 Identities=25% Similarity=0.310 Sum_probs=36.4
Q ss_pred cchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhcc-ccCCCCCeEEEE
Q 039990 83 GRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDK-LTDDFKPKAWVC 142 (1217)
Q Consensus 83 Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~-~~~~F~~~~wv~ 142 (1217)
.+..+....++.|... .+|.+.|++|.|||.||.+.+-+. ..+.|+.++++.
T Consensus 4 p~~~~Q~~~~~al~~~--------~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~R 56 (205)
T PF02562_consen 4 PKNEEQKFALDALLNN--------DLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITR 56 (205)
T ss_dssp --SHHHHHHHHHHHH---------SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE
T ss_pred CCCHHHHHHHHHHHhC--------CeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 3556667777777632 489999999999999999988766 567888887764
No 291
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=92.82 E-value=0.31 Score=45.88 Aligned_cols=102 Identities=19% Similarity=0.240 Sum_probs=46.2
Q ss_pred CCCCCcceEeeccCCCccccCCC--CCCCCCCeEEecCCCCCccccccccccCCcccceeeccCCCccccccccccCCCC
Q 039990 1047 GKLSSLQLLTLIECPGIVFFPEE--GLSTNLTDLEISGDNIYKPLVKWGFDKFSSLRKHCINRCSDAVSFPEVEKGVILP 1124 (1217)
Q Consensus 1047 ~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 1124 (1217)
.++++|+.+.+.+ .+..++.. ..+++|+.+.+.++ ...+....|.++++|+.+.+.+ .+..++. ..|..+
T Consensus 9 ~~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~--~~F~~~ 80 (129)
T PF13306_consen 9 YNCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN--NLKSIGD--NAFSNC 80 (129)
T ss_dssp TT-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS--TT-EE-T--TTTTT-
T ss_pred hCCCCCCEEEECC--CeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc--ccccccc--cccccc
Confidence 4556666666653 34444433 23455666666553 4444445666666677777754 3444443 345556
Q ss_pred CCcceEeecCCCCCcccCccccCCccccccccccc
Q 039990 1125 TSLTLIRISDFPKLERLSSKGFHYLLSLEQLKVSS 1159 (1217)
Q Consensus 1125 ~~L~~L~l~~c~~l~~l~~~~~~~l~~L~~L~l~~ 1159 (1217)
++|+.+.+.. ++..++...+.+. .|+.+.+..
T Consensus 81 ~~l~~i~~~~--~~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 81 TNLKNIDIPS--NITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TTECEEEETT--T-BEEHTTTTTT--T--EEE-TT
T ss_pred ccccccccCc--cccEEchhhhcCC-CceEEEECC
Confidence 7777777754 3556655555555 666665553
No 292
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=92.82 E-value=0.092 Score=53.21 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=21.8
Q ss_pred cEEEEEEccCCchHHHHHHHHHhc
Q 039990 106 FRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 106 ~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
..+|.|.|.+|+||||+|+.++.+
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~ 26 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARH 26 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 368999999999999999998875
No 293
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=92.81 E-value=0.083 Score=53.26 Aligned_cols=23 Identities=39% Similarity=0.494 Sum_probs=20.8
Q ss_pred EEEEEEccCCchHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
++++|+|++|+||||+|+.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998775
No 294
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=92.77 E-value=0.11 Score=55.92 Aligned_cols=42 Identities=21% Similarity=0.276 Sum_probs=34.6
Q ss_pred CcEEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCcc
Q 039990 105 NFRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDF 147 (1217)
Q Consensus 105 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~~ 147 (1217)
.-+++.|+|.+|+|||++|.++... .......++||+..+..
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~-~~~~ge~vlyvs~~e~~ 63 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYE-GAREGEPVLYVSTEESP 63 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH-HHhcCCcEEEEEecCCH
Confidence 3479999999999999999998876 44557889999876653
No 295
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=92.77 E-value=0.2 Score=53.89 Aligned_cols=40 Identities=30% Similarity=0.347 Sum_probs=28.9
Q ss_pred CCcEEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeC
Q 039990 104 ANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVS 144 (1217)
Q Consensus 104 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~ 144 (1217)
...++|+++|.+|+||||++..++.. ....=..+.++++.
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~-l~~~g~~V~li~~D 109 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANK-LKKQGKSVLLAAGD 109 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH-HHhcCCEEEEEeCC
Confidence 45689999999999999999988765 33222345566544
No 296
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=92.74 E-value=0.21 Score=55.90 Aligned_cols=65 Identities=25% Similarity=0.224 Sum_probs=47.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCcccHHHHHHH
Q 039990 79 PAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDFDILRISKA 155 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 155 (1217)
..++|+++....+...+... +-+.+.|.+|+|||+||+.++.. .. ...++|.+.......++...
T Consensus 24 ~~~~g~~~~~~~~l~a~~~~--------~~vll~G~PG~gKT~la~~lA~~-l~---~~~~~i~~t~~l~p~d~~G~ 88 (329)
T COG0714 24 KVVVGDEEVIELALLALLAG--------GHVLLEGPPGVGKTLLARALARA-LG---LPFVRIQCTPDLLPSDLLGT 88 (329)
T ss_pred CeeeccHHHHHHHHHHHHcC--------CCEEEECCCCccHHHHHHHHHHH-hC---CCeEEEecCCCCCHHHhcCc
Confidence 34899888888887777665 35788999999999999998876 33 23456666666665555544
No 297
>PRK06217 hypothetical protein; Validated
Probab=92.71 E-value=0.089 Score=53.15 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=20.7
Q ss_pred EEEEEccCCchHHHHHHHHHhcc
Q 039990 108 VIPLVGMGGIGKTTLAQEVYNDK 130 (1217)
Q Consensus 108 vv~I~G~gGiGKTtLA~~v~~~~ 130 (1217)
.|.|.|.+|.||||+|+++.+..
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999999988763
No 298
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=92.70 E-value=0.14 Score=49.75 Aligned_cols=23 Identities=39% Similarity=0.665 Sum_probs=21.5
Q ss_pred EEEEEEccCCchHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
..+.|.|++|+|||||+++++.+
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~ 27 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLED 27 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhh
Confidence 68899999999999999999986
No 299
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=92.70 E-value=0.55 Score=44.11 Aligned_cols=53 Identities=15% Similarity=0.246 Sum_probs=17.9
Q ss_pred ccccCCcccceeeccCCCccccccccccCCCCCCcceEeecCCCCCcccCccccCCcccc
Q 039990 1093 GFDKFSSLRKHCINRCSDAVSFPEVEKGVILPTSLTLIRISDFPKLERLSSKGFHYLLSL 1152 (1217)
Q Consensus 1093 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~L 1152 (1217)
.|..++.|+.+.+.. .+..++. ..+... +|+.+.+.+ .+..++...|.++++|
T Consensus 76 ~F~~~~~l~~i~~~~--~~~~i~~--~~f~~~-~l~~i~~~~--~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 76 AFSNCTNLKNIDIPS--NITEIGS--SSFSNC-NLKEINIPS--NITKIEENAFKNCTKL 128 (129)
T ss_dssp TTTT-TTECEEEETT--T-BEEHT--TTTTT--T--EEE-TT--B-SS----GGG-----
T ss_pred cccccccccccccCc--cccEEch--hhhcCC-CceEEEECC--CccEECCccccccccC
Confidence 455556666666643 2333333 234443 566655553 4444444445544444
No 300
>PRK15453 phosphoribulokinase; Provisional
Probab=92.69 E-value=0.54 Score=49.66 Aligned_cols=26 Identities=27% Similarity=0.409 Sum_probs=22.4
Q ss_pred CCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 104 ANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 104 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
....+|+|.|.+|.||||+|+++.+.
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~i 28 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKI 28 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34579999999999999999998754
No 301
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=92.68 E-value=0.084 Score=52.90 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=21.0
Q ss_pred EEEEEEccCCchHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
++|.+.|++|+||||+|+++...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999998765
No 302
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.67 E-value=0.074 Score=29.39 Aligned_cols=16 Identities=31% Similarity=0.719 Sum_probs=6.4
Q ss_pred cceEEEcCCCCccccc
Q 039990 483 KLRVLSLEKDNIAEVP 498 (1217)
Q Consensus 483 ~Lr~L~L~~~~i~~lp 498 (1217)
+|++|+|++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555555555555443
No 303
>PRK00889 adenylylsulfate kinase; Provisional
Probab=92.65 E-value=0.11 Score=52.24 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=21.8
Q ss_pred cEEEEEEccCCchHHHHHHHHHhc
Q 039990 106 FRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 106 ~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
..+|+|+|++|+||||+|++++..
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~ 27 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEK 27 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 369999999999999999998876
No 304
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=92.65 E-value=0.95 Score=45.52 Aligned_cols=33 Identities=18% Similarity=0.302 Sum_probs=25.5
Q ss_pred EEEEEEccCCchHHHHHHHHHhccccCCCCCeEEE
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWV 141 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv 141 (1217)
.+++|.|..|.|||||++.++.. .....+.+++
T Consensus 26 ~~~~l~G~nGsGKStLl~~i~G~--~~~~~G~v~~ 58 (180)
T cd03214 26 EIVGILGPNGAGKSTLLKTLAGL--LKPSSGEILL 58 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC--CCCCCcEEEE
Confidence 58999999999999999998864 2334455554
No 305
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=92.63 E-value=0.16 Score=53.16 Aligned_cols=63 Identities=22% Similarity=0.181 Sum_probs=40.8
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhccc-cCCCCCeEEEEeCCcccHHHHHHH
Q 039990 89 ARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKL-TDDFKPKAWVCVSDDFDILRISKA 155 (1217)
Q Consensus 89 ~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~-~~~F~~~~wv~~~~~~~~~~~~~~ 155 (1217)
.+++..+.... ....+|+|.|.||+||+||.-++..... +.+=-.++=|+-|.+++--.++.+
T Consensus 38 ~~ll~~l~p~t----G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGD 101 (323)
T COG1703 38 RELLRALYPRT----GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGD 101 (323)
T ss_pred HHHHHHHhhcC----CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCcccccc
Confidence 45555554433 4457999999999999999988776542 222234556666667654444433
No 306
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=92.62 E-value=0.21 Score=53.23 Aligned_cols=49 Identities=29% Similarity=0.428 Sum_probs=36.8
Q ss_pred CCccccchhhHH---HHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhcc
Q 039990 78 EPAVYGRNEDKA---RILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDK 130 (1217)
Q Consensus 78 ~~~~vGr~~~~~---~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 130 (1217)
...+||..+.++ -++++..+..-++ +.|.|+|++|.|||+||..+.+..
T Consensus 38 ~dG~VGQ~~AReAaGvIv~mik~gk~aG----rgiLi~GppgTGKTAlA~gIa~eL 89 (450)
T COG1224 38 GDGLVGQEEAREAAGVIVKMIKQGKMAG----RGILIVGPPGTGKTALAMGIAREL 89 (450)
T ss_pred CCcccchHHHHHhhhHHHHHHHhCcccc----cEEEEECCCCCcHHHHHHHHHHHh
Confidence 456999765543 3566666554333 889999999999999999998873
No 307
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=92.62 E-value=0.076 Score=54.54 Aligned_cols=22 Identities=41% Similarity=0.685 Sum_probs=19.9
Q ss_pred EEEEEccCCchHHHHHHHHHhc
Q 039990 108 VIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 108 vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
+|+|.|.+|+||||+|+.+...
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998764
No 308
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=92.62 E-value=0.078 Score=51.60 Aligned_cols=22 Identities=27% Similarity=0.605 Sum_probs=19.5
Q ss_pred EEEEEccCCchHHHHHHHHHhc
Q 039990 108 VIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 108 vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
++.|+|++|+||||+|+.+.+.
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 3678999999999999998765
No 309
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=92.62 E-value=0.4 Score=52.29 Aligned_cols=44 Identities=25% Similarity=0.264 Sum_probs=33.5
Q ss_pred CcEEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCcccH
Q 039990 105 NFRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDFDI 149 (1217)
Q Consensus 105 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~~~~ 149 (1217)
.-+++-|+|.+|+||||||.+++.. ....=..++||+....++.
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~-~~~~g~~v~yId~E~~~~~ 97 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAE-AQKAGGTAAFIDAEHALDP 97 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH-HHHcCCcEEEEcccchhHH
Confidence 3479999999999999999998765 3333356779987766654
No 310
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=92.60 E-value=1 Score=44.51 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=21.1
Q ss_pred EEEEEEccCCchHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.+++|+|..|.|||||++.+...
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~ 50 (166)
T cd03223 28 DRLLITGPSGTGKSSLFRALAGL 50 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999998875
No 311
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=92.59 E-value=0.085 Score=52.41 Aligned_cols=22 Identities=36% Similarity=0.554 Sum_probs=20.1
Q ss_pred EEEEEccCCchHHHHHHHHHhc
Q 039990 108 VIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 108 vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.|.|.|.+|+||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999876
No 312
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.58 E-value=0.19 Score=56.29 Aligned_cols=24 Identities=33% Similarity=0.393 Sum_probs=21.5
Q ss_pred cEEEEEEccCCchHHHHHHHHHhc
Q 039990 106 FRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 106 ~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
..+++++|.+|+||||+|.+++..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~ 246 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAK 246 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998864
No 313
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=92.46 E-value=1.6 Score=50.20 Aligned_cols=52 Identities=21% Similarity=0.314 Sum_probs=39.6
Q ss_pred CCccccchhhHHHHHHHHhcCCCCC------CCCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 78 EPAVYGRNEDKARILDMVLKNDPSD------AANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 78 ~~~~vGr~~~~~~l~~~L~~~~~~~------~~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
-.++-|.+..+.++.+++..-...+ -..++=|.++|++|.|||.||++++.+
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAge 246 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGE 246 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhh
Confidence 3568889999998888775422211 133567889999999999999999987
No 314
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=92.44 E-value=0.12 Score=50.64 Aligned_cols=25 Identities=24% Similarity=0.425 Sum_probs=22.5
Q ss_pred CcEEEEEEccCCchHHHHHHHHHhc
Q 039990 105 NFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 105 ~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
...+++|+|..|+|||||++.+...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 4579999999999999999998875
No 315
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=92.43 E-value=1.2 Score=55.88 Aligned_cols=63 Identities=17% Similarity=0.294 Sum_probs=42.5
Q ss_pred CccccchhhHHHHHHHHhcCCC---CCCCCcEEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCC
Q 039990 79 PAVYGRNEDKARILDMVLKNDP---SDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSD 145 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~ 145 (1217)
..++|.++.++.+.+.+..... .......++.++|+.|+|||+||+.++.. . +...+.++++.
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~-l---~~~~~~~d~se 519 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEA-L---GVHLERFDMSE 519 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHH-h---cCCeEEEeCch
Confidence 4578888888888887764211 11022346889999999999999999875 3 23345555443
No 316
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=92.37 E-value=0.12 Score=52.74 Aligned_cols=60 Identities=23% Similarity=0.232 Sum_probs=37.3
Q ss_pred CCcEEEEEEccCCchHHHHHHHHHhccccCCCC--CeEE-------EEeCCcccHHHH--HHHHHHHhhcCC
Q 039990 104 ANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDFK--PKAW-------VCVSDDFDILRI--SKAILESITRSS 164 (1217)
Q Consensus 104 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~--~~~w-------v~~~~~~~~~~~--~~~i~~~l~~~~ 164 (1217)
.++.+|.++||+|.||||..++++.+. ...+. .++= |...-+.|+++. +++..++.+...
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl-~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGP 87 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHL-HAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGP 87 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHH-hhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCC
Confidence 456788899999999999999998873 33332 2221 122233455543 456677665443
No 317
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=92.33 E-value=0.12 Score=52.31 Aligned_cols=34 Identities=38% Similarity=0.529 Sum_probs=27.0
Q ss_pred EEEEEEccCCchHHHHHHHHHhccccCCCCCeEEE
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWV 141 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv 141 (1217)
++|.|+|+.|+|||||+.++... ..+.|...++.
T Consensus 3 r~ivl~Gpsg~GK~~l~~~L~~~-~~~~~~~~v~~ 36 (183)
T PF00625_consen 3 RPIVLVGPSGSGKSTLAKRLIQE-FPDKFGRVVSH 36 (183)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHH-STTTEEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHh-cccccccceee
Confidence 68999999999999999999986 55666433333
No 318
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=92.33 E-value=0.58 Score=42.63 Aligned_cols=51 Identities=14% Similarity=0.307 Sum_probs=35.7
Q ss_pred CccccchhhHHHHHHHHhcC--CCCCCCCcEEEEEEccCCchHHHHHHHHHhcc
Q 039990 79 PAVYGRNEDKARILDMVLKN--DPSDAANFRVIPLVGMGGIGKTTLAQEVYNDK 130 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~--~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 130 (1217)
..++|..-..+.+++.+..- ...+ ..+-|++.+|.+|+|||.+|+.+++..
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p-~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNP-RKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCC-CCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 45778776666665555321 1112 667899999999999999888877663
No 319
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=92.31 E-value=0.92 Score=43.56 Aligned_cols=23 Identities=39% Similarity=0.550 Sum_probs=20.9
Q ss_pred EEEEEEccCCchHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.+++|.|..|.|||||++.+...
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~ 49 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGE 49 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCC
Confidence 58999999999999999998764
No 320
>PRK13949 shikimate kinase; Provisional
Probab=92.30 E-value=0.1 Score=51.67 Aligned_cols=22 Identities=45% Similarity=0.572 Sum_probs=20.3
Q ss_pred EEEEEccCCchHHHHHHHHHhc
Q 039990 108 VIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 108 vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.|.|+|++|.||||+|+.+++.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999998876
No 321
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=92.30 E-value=0.34 Score=53.87 Aligned_cols=49 Identities=18% Similarity=0.280 Sum_probs=36.8
Q ss_pred cEEEEEEccCCchHHHHHHHHHhcc-ccCCC----CCeEEEEeCCcccHHHHHH
Q 039990 106 FRVIPLVGMGGIGKTTLAQEVYNDK-LTDDF----KPKAWVCVSDDFDILRISK 154 (1217)
Q Consensus 106 ~~vv~I~G~gGiGKTtLA~~v~~~~-~~~~F----~~~~wv~~~~~~~~~~~~~ 154 (1217)
-.++-|+|.+|+|||++|.+++... ....+ ..++||+....|+...+.+
T Consensus 102 g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~ 155 (317)
T PRK04301 102 QSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ 155 (317)
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH
Confidence 4789999999999999999987652 11111 3789999988887766544
No 322
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=92.25 E-value=0.2 Score=48.29 Aligned_cols=36 Identities=19% Similarity=0.446 Sum_probs=29.9
Q ss_pred hhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 85 NEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 85 ~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.+.+++|.+.+.. ++++++|..|||||||+..+..+
T Consensus 23 ~~g~~~l~~~l~~---------k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 23 GEGIEELKELLKG---------KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTTHHHHHHHHTT---------SEEEEECSTTSSHHHHHHHHHTS
T ss_pred CcCHHHHHHHhcC---------CEEEEECCCCCCHHHHHHHHHhh
Confidence 3557788888743 58999999999999999998875
No 323
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=92.24 E-value=0.11 Score=49.44 Aligned_cols=21 Identities=38% Similarity=0.689 Sum_probs=19.3
Q ss_pred EEEEccCCchHHHHHHHHHhc
Q 039990 109 IPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 109 v~I~G~gGiGKTtLA~~v~~~ 129 (1217)
|+|+|+.|+|||||++.+.+.
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 789999999999999998875
No 324
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=92.24 E-value=0.12 Score=50.96 Aligned_cols=21 Identities=43% Similarity=0.665 Sum_probs=18.4
Q ss_pred EEEEccCCchHHHHHHHHHhc
Q 039990 109 IPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 109 v~I~G~gGiGKTtLA~~v~~~ 129 (1217)
|.|.|.+|+||||+++.+++.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~ 22 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEE 22 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHH
Confidence 679999999999999998876
No 325
>PRK14737 gmk guanylate kinase; Provisional
Probab=92.20 E-value=0.13 Score=51.70 Aligned_cols=25 Identities=20% Similarity=0.405 Sum_probs=22.4
Q ss_pred CcEEEEEEccCCchHHHHHHHHHhc
Q 039990 105 NFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 105 ~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
..++|.|+|++|+|||||++++..+
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3589999999999999999998875
No 326
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=92.18 E-value=0.093 Score=50.87 Aligned_cols=22 Identities=32% Similarity=0.522 Sum_probs=20.1
Q ss_pred EEEEEccCCchHHHHHHHHHhc
Q 039990 108 VIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 108 vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
+|.|+|.+|+||||+|+++...
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~ 22 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKK 22 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999998875
No 327
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=92.14 E-value=2 Score=47.65 Aligned_cols=77 Identities=16% Similarity=0.236 Sum_probs=46.9
Q ss_pred HHHHHhhcccCCCCCCcEEEEEcCc-hHHHHhh-CCCceEeccCCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHh
Q 039990 189 ELWQALKSPFMAGAPGSRIIVTTRS-MDVALKM-GSGKNYELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAK 266 (1217)
Q Consensus 189 ~~~~~l~~~~~~~~~gs~ilvTtR~-~~v~~~~-~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~ 266 (1217)
..++.+...+..-.+++.+|.+|.+ ..+.... .....+.+.+++.++..+.+.... . .+ .+.++..
T Consensus 147 ~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~-----~--~~-----~~~~l~~ 214 (342)
T PRK06964 147 AAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG-----V--AD-----ADALLAE 214 (342)
T ss_pred HHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC-----C--Ch-----HHHHHHH
Confidence 4456666555544556655555544 4443332 334688999999999998887642 1 11 2345778
Q ss_pred ccCCchhHHHH
Q 039990 267 CKGLPLAARAL 277 (1217)
Q Consensus 267 ~~g~PLai~~~ 277 (1217)
++|.|.....+
T Consensus 215 ~~Gsp~~Al~~ 225 (342)
T PRK06964 215 AGGAPLAALAL 225 (342)
T ss_pred cCCCHHHHHHH
Confidence 89999755443
No 328
>PRK13947 shikimate kinase; Provisional
Probab=92.10 E-value=0.1 Score=52.09 Aligned_cols=22 Identities=41% Similarity=0.584 Sum_probs=20.1
Q ss_pred EEEEEccCCchHHHHHHHHHhc
Q 039990 108 VIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 108 vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
-|.|+|++|+||||+|+.+++.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~ 24 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATT 24 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999998876
No 329
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=92.05 E-value=0.13 Score=50.94 Aligned_cols=39 Identities=26% Similarity=0.325 Sum_probs=28.6
Q ss_pred EEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCcc
Q 039990 108 VIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDF 147 (1217)
Q Consensus 108 vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~~ 147 (1217)
++.|+|.+|+|||++|..+.... ...-..++|++.....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~-~~~~~~v~~~~~e~~~ 39 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI-ATKGGKVVYVDIEEEI 39 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH-HhcCCEEEEEECCcch
Confidence 36799999999999999988763 2233456777765544
No 330
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=92.04 E-value=0.11 Score=47.91 Aligned_cols=35 Identities=29% Similarity=0.405 Sum_probs=25.7
Q ss_pred EEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCcc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDF 147 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~~ 147 (1217)
.-|.|.|-+|+||||+|.+++.. .. .-|+++++-.
T Consensus 8 PNILvtGTPG~GKstl~~~lae~---~~---~~~i~isd~v 42 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEK---TG---LEYIEISDLV 42 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHH---hC---CceEehhhHH
Confidence 35779999999999999998854 22 2366665543
No 331
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=92.03 E-value=0.12 Score=50.15 Aligned_cols=33 Identities=24% Similarity=0.363 Sum_probs=24.5
Q ss_pred EEEEEccCCchHHHHHHHHHhccccCCCCCeEE
Q 039990 108 VIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAW 140 (1217)
Q Consensus 108 vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~w 140 (1217)
|++|+|..|+||||++.++........+...+.
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~G~~V~vi 33 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKARGYRVATI 33 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 578999999999999999988632334544433
No 332
>PRK04296 thymidine kinase; Provisional
Probab=92.03 E-value=0.15 Score=51.71 Aligned_cols=23 Identities=17% Similarity=0.107 Sum_probs=20.5
Q ss_pred EEEEEEccCCchHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.++.|+|..|.||||+|..++.+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~ 25 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYN 25 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHH
Confidence 57889999999999999988776
No 333
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=92.02 E-value=0.11 Score=52.33 Aligned_cols=23 Identities=30% Similarity=0.619 Sum_probs=21.1
Q ss_pred EEEEEEccCCchHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
++|+|+|+.|+||||||+.++..
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHcc
Confidence 58999999999999999998875
No 334
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.99 E-value=0.19 Score=60.26 Aligned_cols=51 Identities=14% Similarity=0.186 Sum_probs=40.6
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 78 EPAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 78 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
-.+++|-++.++++..++....... ...+++.|+|++|.||||+++.++..
T Consensus 83 ldel~~~~~ki~~l~~~l~~~~~~~-~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 83 QHELAVHKKKIEEVETWLKAQVLEN-APKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred HHHhcCcHHHHHHHHHHHHhccccc-CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999987543221 23368999999999999999998875
No 335
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=91.98 E-value=0.18 Score=51.13 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=20.9
Q ss_pred EEEEEEccCCchHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.+++|+|..|.||||||+.+.--
T Consensus 34 e~lgivGeSGsGKSTL~r~l~Gl 56 (252)
T COG1124 34 ETLGIVGESGSGKSTLARLLAGL 56 (252)
T ss_pred CEEEEEcCCCCCHHHHHHHHhcc
Confidence 48999999999999999998764
No 336
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.97 E-value=0.84 Score=45.44 Aligned_cols=33 Identities=24% Similarity=0.328 Sum_probs=25.2
Q ss_pred EEEEEEccCCchHHHHHHHHHhccccCCCCCeEEE
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWV 141 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv 141 (1217)
.+++|.|..|.|||||.+.++.- .....+.+++
T Consensus 29 ~~~~l~G~nGsGKstLl~~i~G~--~~~~~G~i~~ 61 (171)
T cd03228 29 EKVAIVGPSGSGKSTLLKLLLRL--YDPTSGEILI 61 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHcC--CCCCCCEEEE
Confidence 58999999999999999998874 2233455544
No 337
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=91.95 E-value=0.85 Score=58.11 Aligned_cols=51 Identities=22% Similarity=0.330 Sum_probs=39.0
Q ss_pred CccccchhhHHHHHHHHhcCCCC---CCCCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 79 PAVYGRNEDKARILDMVLKNDPS---DAANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
..++|.+..++.+.+.+.....+ +.....++.++|+.|+|||++|+.+...
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~ 618 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEF 618 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 45899999999999888753211 1022457889999999999999998875
No 338
>COG4240 Predicted kinase [General function prediction only]
Probab=91.94 E-value=0.8 Score=45.64 Aligned_cols=56 Identities=14% Similarity=0.104 Sum_probs=38.1
Q ss_pred CCcEEEEEEccCCchHHHHHHHHHhcc-ccCCCCCeEEEEeCCcccHHHHHHHHHHHh
Q 039990 104 ANFRVIPLVGMGGIGKTTLAQEVYNDK-LTDDFKPKAWVCVSDDFDILRISKAILESI 160 (1217)
Q Consensus 104 ~~~~vv~I~G~gGiGKTtLA~~v~~~~-~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l 160 (1217)
+++-+++|.|+-|.||||+|..+++.. .+.. ..++-.+...=+-..+-...++++.
T Consensus 48 grPli~gisGpQGSGKStls~~i~~~L~~kg~-ert~~lSLDDlYlthadrl~La~q~ 104 (300)
T COG4240 48 GRPLIVGISGPQGSGKSTLSALIVRLLAAKGL-ERTATLSLDDLYLTHADRLRLARQV 104 (300)
T ss_pred CCceEEEeecCCCCchhhHHHHHHHHHHHhcc-cceEEeehhhhhcchHHHHHHHHhc
Confidence 557899999999999999999999874 3332 4566666554443344444455553
No 339
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=91.92 E-value=0.18 Score=52.16 Aligned_cols=35 Identities=26% Similarity=0.374 Sum_probs=29.8
Q ss_pred EEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEe
Q 039990 108 VIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCV 143 (1217)
Q Consensus 108 vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~ 143 (1217)
.++|+|..|.||||++..+... ....|+.+++++-
T Consensus 15 r~viIG~sGSGKT~li~~lL~~-~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYY-LRHKFDHIFLITP 49 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHh-hcccCCEEEEEec
Confidence 5778999999999999999877 7888987777754
No 340
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=91.92 E-value=0.69 Score=53.49 Aligned_cols=58 Identities=16% Similarity=0.105 Sum_probs=35.5
Q ss_pred cEEEEEEccCCchHHHHHHHHHhcc-ccCCCCCeEEEEeCC-cccHHHHHHHHHHHhhcC
Q 039990 106 FRVIPLVGMGGIGKTTLAQEVYNDK-LTDDFKPKAWVCVSD-DFDILRISKAILESITRS 163 (1217)
Q Consensus 106 ~~vv~I~G~gGiGKTtLA~~v~~~~-~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~~ 163 (1217)
.+|++++|..|+||||++..++... .+..-..+..|.... .....+-++..++..+..
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVp 315 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVP 315 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCC
Confidence 4799999999999999999988753 222222355555433 123334444455555443
No 341
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=91.88 E-value=0.7 Score=46.39 Aligned_cols=23 Identities=43% Similarity=0.586 Sum_probs=21.0
Q ss_pred EEEEEEccCCchHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.+++|.|..|.|||||++.++..
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~ 51 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGD 51 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 58999999999999999998864
No 342
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=91.86 E-value=0.16 Score=55.60 Aligned_cols=47 Identities=23% Similarity=0.304 Sum_probs=31.1
Q ss_pred EEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCcccHHHHHH
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDFDILRISK 154 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 154 (1217)
|++.+.|-|||||||+|.+.+-...+.. ..+.-|+.....++.+++.
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G-~rtLlvS~Dpa~~L~d~l~ 48 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRG-KRTLLVSTDPAHSLSDVLG 48 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTT-S-EEEEESSTTTHHHHHHT
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCC-CCeeEeecCCCccHHHHhC
Confidence 5889999999999999987765432222 2355666655555555544
No 343
>PRK09354 recA recombinase A; Provisional
Probab=91.84 E-value=0.57 Score=51.62 Aligned_cols=44 Identities=23% Similarity=0.258 Sum_probs=34.6
Q ss_pred CcEEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCcccH
Q 039990 105 NFRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDFDI 149 (1217)
Q Consensus 105 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~~~~ 149 (1217)
.-+++-|+|.+|+||||||.+++.. ....=..++||+....++.
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~-~~~~G~~~~yId~E~s~~~ 102 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAE-AQKAGGTAAFIDAEHALDP 102 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH-HHHcCCcEEEECCccchHH
Confidence 3479999999999999999998765 3333356789988877765
No 344
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=91.84 E-value=0.47 Score=46.79 Aligned_cols=45 Identities=22% Similarity=0.327 Sum_probs=32.3
Q ss_pred cccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 81 VYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 81 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
+||.+..+.++++.+..-... ..-|.|+|..|.||+.+|+.+++.
T Consensus 1 liG~s~~m~~~~~~~~~~a~~----~~pVlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASS----DLPVLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTS----TS-EEEECSTTSSHHHHHHHHHHC
T ss_pred CEeCCHHHHHHHHHHHHHhCC----CCCEEEEcCCCCcHHHHHHHHHHh
Confidence 478888888888777654321 145669999999999999998875
No 345
>PRK03846 adenylylsulfate kinase; Provisional
Probab=91.80 E-value=0.15 Score=52.21 Aligned_cols=25 Identities=28% Similarity=0.376 Sum_probs=22.3
Q ss_pred CcEEEEEEccCCchHHHHHHHHHhc
Q 039990 105 NFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 105 ~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
...+|+|+|++|+||||+|+.+...
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~~ 47 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEEA 47 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3479999999999999999998875
No 346
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=91.78 E-value=0.15 Score=64.18 Aligned_cols=51 Identities=27% Similarity=0.407 Sum_probs=37.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 79 PAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.+.+|.++.++++.+++......+....+++.++|++|+|||++|+.+++.
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~ 370 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKA 370 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 458899998999888664321111022357899999999999999999876
No 347
>PRK12377 putative replication protein; Provisional
Probab=91.78 E-value=0.12 Score=54.35 Aligned_cols=36 Identities=28% Similarity=0.255 Sum_probs=27.6
Q ss_pred EEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEe
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCV 143 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~ 143 (1217)
..+.++|.+|+|||+||.++++... .....++++++
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~-~~g~~v~~i~~ 137 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLL-AKGRSVIVVTV 137 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH-HcCCCeEEEEH
Confidence 4788999999999999999998743 33334566654
No 348
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=91.75 E-value=0.25 Score=52.34 Aligned_cols=49 Identities=22% Similarity=0.317 Sum_probs=34.3
Q ss_pred EEEEEEccCCchHHHHHHHHHhccccCCCC-CeEEEEeCCcc-cHHHHHHHH
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDKLTDDFK-PKAWVCVSDDF-DILRISKAI 156 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~-~~~wv~~~~~~-~~~~~~~~i 156 (1217)
+.++|.|..|+|||+||+++++. ++.+|+ .++++-+++.. .+.++.+++
T Consensus 70 Qr~~If~~~G~GKTtLa~~i~~~-i~~~~~~~~V~~~iGer~~Ev~e~~~~~ 120 (274)
T cd01133 70 GKIGLFGGAGVGKTVLIMELINN-IAKAHGGYSVFAGVGERTREGNDLYHEM 120 (274)
T ss_pred CEEEEecCCCCChhHHHHHHHHH-HHhcCCCEEEEEEeccCcHHHHHHHHHH
Confidence 57899999999999999999987 555664 44555565544 234444333
No 349
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=91.74 E-value=0.36 Score=51.91 Aligned_cols=55 Identities=24% Similarity=0.291 Sum_probs=34.3
Q ss_pred hhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCcccHHHH
Q 039990 86 EDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDFDILRI 152 (1217)
Q Consensus 86 ~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~~~~~~~ 152 (1217)
+-++++...+..+ +.|.+.|.+|+|||++|+++++. .. ...+++++....+..++
T Consensus 9 ~l~~~~l~~l~~g--------~~vLL~G~~GtGKT~lA~~la~~-lg---~~~~~i~~~~~~~~~dl 63 (262)
T TIGR02640 9 RVTSRALRYLKSG--------YPVHLRGPAGTGKTTLAMHVARK-RD---RPVMLINGDAELTTSDL 63 (262)
T ss_pred HHHHHHHHHHhcC--------CeEEEEcCCCCCHHHHHHHHHHH-hC---CCEEEEeCCccCCHHHH
Confidence 3345555555432 35678999999999999998864 21 12345555555544444
No 350
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=91.72 E-value=0.51 Score=59.61 Aligned_cols=51 Identities=24% Similarity=0.294 Sum_probs=38.7
Q ss_pred CccccchhhHHHHHHHHhcCCC---CCCCCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 79 PAVYGRNEDKARILDMVLKNDP---SDAANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
..++|.++.++.+.+.+..... .+.....++.++|+.|+|||.+|++++..
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~ 619 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAEL 619 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999888854211 11133457899999999999999998765
No 351
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=91.71 E-value=0.67 Score=56.14 Aligned_cols=52 Identities=21% Similarity=0.353 Sum_probs=40.1
Q ss_pred CCccccchhhHHHHHHHHhcCCCC---CCCCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 78 EPAVYGRNEDKARILDMVLKNDPS---DAANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 78 ~~~~vGr~~~~~~l~~~L~~~~~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
...++|.++.+..+.+.+.....+ +.....++...|+.|||||-||++++..
T Consensus 490 ~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~ 544 (786)
T COG0542 490 KKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEA 544 (786)
T ss_pred hcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHH
Confidence 346899999999998888654321 1144567888999999999999998875
No 352
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=91.70 E-value=0.48 Score=50.14 Aligned_cols=40 Identities=25% Similarity=0.370 Sum_probs=30.4
Q ss_pred cEEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCc
Q 039990 106 FRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDD 146 (1217)
Q Consensus 106 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~ 146 (1217)
-.++.|.|.+|+|||++|.++...-. ..=..++||+....
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~-~~ge~~lyvs~ee~ 60 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGL-QMGEPGIYVALEEH 60 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHH-HcCCcEEEEEeeCC
Confidence 47999999999999999998765422 33456888886553
No 353
>PRK14530 adenylate kinase; Provisional
Probab=91.70 E-value=0.12 Score=53.75 Aligned_cols=23 Identities=30% Similarity=0.432 Sum_probs=20.6
Q ss_pred EEEEEEccCCchHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
+.|.|+|++|+||||+|+.++..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~ 26 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEE 26 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36889999999999999998875
No 354
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=91.67 E-value=0.33 Score=52.95 Aligned_cols=43 Identities=26% Similarity=0.230 Sum_probs=33.9
Q ss_pred cEEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCcccH
Q 039990 106 FRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDFDI 149 (1217)
Q Consensus 106 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~~~~ 149 (1217)
-+++-|+|++|+||||||.+++.. ....-..++||+....++.
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~-~~~~g~~~vyId~E~~~~~ 97 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAE-AQKLGGTVAFIDAEHALDP 97 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH-HHHcCCCEEEECccccHHH
Confidence 478999999999999999998765 3333456889988777664
No 355
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=91.63 E-value=0.5 Score=52.48 Aligned_cols=54 Identities=19% Similarity=0.271 Sum_probs=38.5
Q ss_pred cEEEEEEccCCchHHHHHHHHHhcc-ccCC----CCCeEEEEeCCcccHHHHHHHHHHHh
Q 039990 106 FRVIPLVGMGGIGKTTLAQEVYNDK-LTDD----FKPKAWVCVSDDFDILRISKAILESI 160 (1217)
Q Consensus 106 ~~vv~I~G~gGiGKTtLA~~v~~~~-~~~~----F~~~~wv~~~~~~~~~~~~~~i~~~l 160 (1217)
-.++-|+|.+|+|||++|.+++... .... =..++||+....|+...+.+ +++.+
T Consensus 95 g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~-~~~~~ 153 (310)
T TIGR02236 95 QAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQ-MAEAR 153 (310)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHH-HHHHc
Confidence 4789999999999999999987652 1110 12789999988887766543 34443
No 356
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=91.63 E-value=0.35 Score=51.56 Aligned_cols=53 Identities=23% Similarity=0.385 Sum_probs=37.8
Q ss_pred EEEEEEccCCchHHHHHHHHHhcc-ccC---CC-CCeEEEEeCCcccHHHHHHHHHHHh
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDK-LTD---DF-KPKAWVCVSDDFDILRISKAILESI 160 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~-~~~---~F-~~~~wv~~~~~~~~~~~~~~i~~~l 160 (1217)
.+.=|+|.+|+|||+||.+++-.. ... .. ..++||+-...|....+.+ |++..
T Consensus 39 ~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~-i~~~~ 96 (256)
T PF08423_consen 39 SITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQ-IAERF 96 (256)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHH-HHHHT
T ss_pred cEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHH-Hhhcc
Confidence 589999999999999998876542 221 12 2588999888888777654 55543
No 357
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=91.63 E-value=0.33 Score=55.05 Aligned_cols=39 Identities=31% Similarity=0.433 Sum_probs=28.0
Q ss_pred CcEEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeC
Q 039990 105 NFRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVS 144 (1217)
Q Consensus 105 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~ 144 (1217)
.+.+|.++|.+|+||||+|..++....+..+ .++.|++.
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~-kV~lV~~D 137 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGF-KPCLVCAD 137 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCC-CEEEEcCc
Confidence 4689999999999999999988765222222 45555543
No 358
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=91.61 E-value=0.28 Score=49.04 Aligned_cols=22 Identities=50% Similarity=0.626 Sum_probs=19.9
Q ss_pred EEEEEccCCchHHHHHHHHHhc
Q 039990 108 VIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 108 vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
++.++|++|+||||++..++..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~ 23 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALY 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6789999999999999998865
No 359
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=91.60 E-value=0.34 Score=51.70 Aligned_cols=26 Identities=38% Similarity=0.373 Sum_probs=23.4
Q ss_pred CCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 104 ANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 104 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.+..+|.|.|.+|.|||||+..+.+.
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~ 127 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMR 127 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45689999999999999999998876
No 360
>PRK06761 hypothetical protein; Provisional
Probab=91.55 E-value=0.17 Score=53.92 Aligned_cols=24 Identities=29% Similarity=0.464 Sum_probs=21.9
Q ss_pred EEEEEEccCCchHHHHHHHHHhcc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDK 130 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~ 130 (1217)
++|.|.|++|+||||+|+.+++..
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L 27 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDIL 27 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhc
Confidence 589999999999999999999863
No 361
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=91.53 E-value=0.14 Score=50.85 Aligned_cols=23 Identities=39% Similarity=0.553 Sum_probs=21.0
Q ss_pred EEEEEEccCCchHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
+.|.|+|+.|.||||+|+.+...
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~ 27 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHH
Confidence 46899999999999999998875
No 362
>PLN02200 adenylate kinase family protein
Probab=91.51 E-value=0.16 Score=53.22 Aligned_cols=26 Identities=19% Similarity=0.227 Sum_probs=22.5
Q ss_pred CCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 104 ANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 104 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
..+.+|.|.|++|+||||+|+.++..
T Consensus 41 ~~~~ii~I~G~PGSGKsT~a~~La~~ 66 (234)
T PLN02200 41 KTPFITFVLGGPGSGKGTQCEKIVET 66 (234)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999998765
No 363
>PLN02348 phosphoribulokinase
Probab=91.48 E-value=0.24 Score=54.98 Aligned_cols=26 Identities=27% Similarity=0.310 Sum_probs=23.3
Q ss_pred CCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 104 ANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 104 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
+...+|+|.|.+|.||||+|+.+.+.
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~ 72 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSV 72 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45689999999999999999998875
No 364
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=91.47 E-value=0.13 Score=49.73 Aligned_cols=22 Identities=41% Similarity=0.637 Sum_probs=19.8
Q ss_pred EEEEEccCCchHHHHHHHHHhc
Q 039990 108 VIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 108 vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
+|.|+|.+|.||||+|+.+...
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~ 22 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEK 22 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999999998875
No 365
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=91.46 E-value=0.47 Score=53.48 Aligned_cols=69 Identities=16% Similarity=0.170 Sum_probs=39.3
Q ss_pred CcEEEEEEccCCchHHHHHHHHHhcc-cc--CCCCCeEEEEeCCc-ccHHHHHHHHHHHhhcCCCCCCChhHH
Q 039990 105 NFRVIPLVGMGGIGKTTLAQEVYNDK-LT--DDFKPKAWVCVSDD-FDILRISKAILESITRSSCGLTDLNSV 173 (1217)
Q Consensus 105 ~~~vv~I~G~gGiGKTtLA~~v~~~~-~~--~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~ 173 (1217)
..++|.++|..|+||||.+..++... .. ..=..+..|++... ....+-++..++.++.+.......+++
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l 245 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDL 245 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHH
Confidence 45799999999999999998887653 11 11124455555432 122233555555565543333333333
No 366
>PRK13948 shikimate kinase; Provisional
Probab=91.46 E-value=0.17 Score=50.57 Aligned_cols=25 Identities=24% Similarity=0.399 Sum_probs=22.2
Q ss_pred CcEEEEEEccCCchHHHHHHHHHhc
Q 039990 105 NFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 105 ~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
..+.|.++|+.|+||||+++.+.+.
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~ 33 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRA 33 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3468899999999999999998876
No 367
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=91.40 E-value=0.052 Score=55.13 Aligned_cols=176 Identities=10% Similarity=0.019 Sum_probs=94.0
Q ss_pred CCccEEeecCCCCCccc----ccccccccCcceEeeccCC----------CccccccccCCCCcccEEEEcCCCCCcccc
Q 039990 932 VTLKCIQIEDCSNFKVL----TSECQLSVAVEELTIDSCS----------NIESIAERFHDDACLRSIRLSYCKNLKSLP 997 (1217)
Q Consensus 932 ~~L~~L~l~~~~~l~~~----~~~~~~l~~L~~L~l~~~~----------~l~~l~~~~~~l~~L~~L~L~~c~~l~~l~ 997 (1217)
..++.+++|+|..-+.. ...+.+-.+|+..++++-- ++..+...+..||.|+..+||+|..-...|
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~ 109 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP 109 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence 46788888887665532 3334455667776666511 111222344558889999998876544443
Q ss_pred c----cCCCCCCcceEEecCCCCCcccCCCC---------------CCCCcceEEEccCcCcccCCCC-----CCCCCcc
Q 039990 998 K----GLNNLSHLHRRSIQGCHNLVSLPEDA---------------LPSNVVDVSIEDCDKLKAPLPT-----GKLSSLQ 1053 (1217)
Q Consensus 998 ~----~l~~l~~L~~L~l~~c~~l~~l~~~~---------------~~~~L~~L~l~~~~~l~~~~~~-----~~l~~L~ 1053 (1217)
. -++..+.|++|.+++|. +..+.... -.|.|++.....|..-..+-.. ..=..|+
T Consensus 110 e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk 188 (388)
T COG5238 110 EELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLK 188 (388)
T ss_pred hHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCce
Confidence 3 34667888888888864 44332211 1245666666665533321000 1114566
Q ss_pred eEeeccCCCc----cc--cCCCCCCCCCCeEEecCCCCCcccc---ccccccCCcccceeeccC
Q 039990 1054 LLTLIECPGI----VF--FPEEGLSTNLTDLEISGDNIYKPLV---KWGFDKFSSLRKHCINRC 1108 (1217)
Q Consensus 1054 ~L~l~~c~~l----~~--~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~l~~L~~L~l~~~ 1108 (1217)
++.+..|..- +. +....++.+|+.|++.+|..+..-+ ..++...+.|++|.+..|
T Consensus 189 ~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDC 252 (388)
T COG5238 189 EVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDC 252 (388)
T ss_pred eEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccch
Confidence 6666654311 00 1111346677777777766552211 112344555677777666
No 368
>PRK14738 gmk guanylate kinase; Provisional
Probab=91.39 E-value=0.18 Score=52.01 Aligned_cols=26 Identities=19% Similarity=0.360 Sum_probs=22.4
Q ss_pred CCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 104 ANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 104 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
...+.|.|+|++|+|||||++.+.+.
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 44588999999999999999998754
No 369
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=91.38 E-value=0.14 Score=55.81 Aligned_cols=41 Identities=29% Similarity=0.313 Sum_probs=28.2
Q ss_pred EEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCccc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDFD 148 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~~~ 148 (1217)
+.|+|+|-||+||||+|..++....+..+ .++-|+.....+
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~La~~G~-~VlliD~D~q~~ 41 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAALAEMGK-KVMIVGCDPKAD 41 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHHHHHCCC-eEEEEeCCCCCC
Confidence 46899999999999999888765433333 344555554443
No 370
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=91.38 E-value=0.7 Score=42.23 Aligned_cols=112 Identities=17% Similarity=0.210 Sum_probs=55.9
Q ss_pred EEEccCCchHHHHHHHHHhccccCCCCCeEEEE-------eCC--------cccHHHHHHHHHHHhhcCCCCC-----CC
Q 039990 110 PLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVC-------VSD--------DFDILRISKAILESITRSSCGL-----TD 169 (1217)
Q Consensus 110 ~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~-------~~~--------~~~~~~~~~~i~~~l~~~~~~~-----~~ 169 (1217)
.|.|-+|+|||+|++.+..+...+.|-..+=|+ +.. +..-.+.++.|........... ..
T Consensus 12 lIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVYDVT 91 (198)
T KOG0079|consen 12 LIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVT 91 (198)
T ss_pred HeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEEECc
Confidence 478999999999999977653333332111111 110 0012456677777765544321 11
Q ss_pred hhHHHHHHHHHHHhcCcCHHHHHHhhcccCCCCCCcEEEEEcCchHHHHhhC
Q 039990 170 LNSVQLKLKEAVFKKNKSYELWQALKSPFMAGAPGSRIIVTTRSMDVALKMG 221 (1217)
Q Consensus 170 ~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~v~~~~~ 221 (1217)
..+......+||..-..+.+....+.-.=....++-|++.|.-.+..|..|+
T Consensus 92 n~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mg 143 (198)
T KOG0079|consen 92 NGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPERRVVDTEDARAFALQMG 143 (198)
T ss_pred chhhhHhHHHHHHHHHhcCccccceecccCCCCccceeeehHHHHHHHHhcC
Confidence 2233344555554432222222221111112346777887777777776554
No 371
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=91.36 E-value=0.16 Score=47.01 Aligned_cols=22 Identities=32% Similarity=0.628 Sum_probs=19.8
Q ss_pred EEEEccCCchHHHHHHHHHhcc
Q 039990 109 IPLVGMGGIGKTTLAQEVYNDK 130 (1217)
Q Consensus 109 v~I~G~gGiGKTtLA~~v~~~~ 130 (1217)
|.|+|..|+|||||.+.+....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 6899999999999999988764
No 372
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=91.35 E-value=0.68 Score=52.63 Aligned_cols=69 Identities=16% Similarity=0.158 Sum_probs=39.7
Q ss_pred CcEEEEEEccCCchHHHHHHHHHhcc-ccCCCCCeEEEEeCC-cccHHHHHHHHHHHhhcCCCCCCChhHH
Q 039990 105 NFRVIPLVGMGGIGKTTLAQEVYNDK-LTDDFKPKAWVCVSD-DFDILRISKAILESITRSSCGLTDLNSV 173 (1217)
Q Consensus 105 ~~~vv~I~G~gGiGKTtLA~~v~~~~-~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 173 (1217)
...+|+++|..|+||||++..+.... .....+.+.++.... .....+-+...++.++.+.....+..++
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl 260 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADL 260 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHH
Confidence 34799999999999999998877643 222233444554332 2233334445555555544333444433
No 373
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=91.34 E-value=0.37 Score=52.39 Aligned_cols=53 Identities=28% Similarity=0.505 Sum_probs=34.8
Q ss_pred CCccccchhhHHH---HHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhccccCCC
Q 039990 78 EPAVYGRNEDKAR---ILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDF 135 (1217)
Q Consensus 78 ~~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F 135 (1217)
...+||..+.++. ++++..+..-.+ +.|.|.|++|.|||+||..+++. .....
T Consensus 23 ~~GlVGQ~~AReAagiiv~mIk~~K~aG----r~iLiaGppGtGKTAlA~~ia~e-LG~~~ 78 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVDMIKEGKIAG----RAILIAGPPGTGKTALAMAIAKE-LGEDV 78 (398)
T ss_dssp ETTEES-HHHHHHHHHHHHHHHTT--TT-----EEEEEE-TTSSHHHHHHHHHHH-CTTTS
T ss_pred cccccChHHHHHHHHHHHHHHhcccccC----cEEEEeCCCCCCchHHHHHHHHH-hCCCC
Confidence 3479998765443 456665544232 89999999999999999999987 44333
No 374
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=91.33 E-value=0.14 Score=50.01 Aligned_cols=21 Identities=43% Similarity=0.610 Sum_probs=19.2
Q ss_pred EEEEccCCchHHHHHHHHHhc
Q 039990 109 IPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 109 v~I~G~gGiGKTtLA~~v~~~ 129 (1217)
|.|+|++|.||||+|+.+...
T Consensus 2 i~l~G~~GsGKstla~~la~~ 22 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKA 22 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 679999999999999998865
No 375
>PHA02244 ATPase-like protein
Probab=91.31 E-value=0.26 Score=54.14 Aligned_cols=44 Identities=25% Similarity=0.296 Sum_probs=29.9
Q ss_pred CCccccchhhH----HHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 78 EPAVYGRNEDK----ARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 78 ~~~~vGr~~~~----~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
+..++|..... ..+..++... .-|.|+|.+|+|||++|+++++.
T Consensus 95 d~~~ig~sp~~~~~~~ri~r~l~~~--------~PVLL~GppGtGKTtLA~aLA~~ 142 (383)
T PHA02244 95 DTTKIASNPTFHYETADIAKIVNAN--------IPVFLKGGAGSGKNHIAEQIAEA 142 (383)
T ss_pred CCcccCCCHHHHHHHHHHHHHHhcC--------CCEEEECCCCCCHHHHHHHHHHH
Confidence 44566754433 3444444332 24678999999999999998875
No 376
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=91.26 E-value=0.19 Score=44.58 Aligned_cols=21 Identities=43% Similarity=0.550 Sum_probs=19.4
Q ss_pred EEEEEEccCCchHHHHHHHHH
Q 039990 107 RVIPLVGMGGIGKTTLAQEVY 127 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~ 127 (1217)
..++|.|..|.|||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 689999999999999999865
No 377
>PLN02318 phosphoribulokinase/uridine kinase
Probab=91.25 E-value=0.25 Score=57.52 Aligned_cols=26 Identities=27% Similarity=0.447 Sum_probs=23.0
Q ss_pred CCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 104 ANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 104 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
++..+|+|.|..|.||||||+.+...
T Consensus 63 ~~riIIGIaGpSGSGKTTLAk~Lagl 88 (656)
T PLN02318 63 DGIILVGVAGPSGAGKTVFTEKVLNF 88 (656)
T ss_pred CCeEEEEEECCCCCcHHHHHHHHHhh
Confidence 45689999999999999999998764
No 378
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.21 E-value=0.026 Score=57.42 Aligned_cols=81 Identities=25% Similarity=0.294 Sum_probs=55.4
Q ss_pred hcCCCCcceEEEcCCCCcccccccccccccChhhhcccccCcEEecccccccccccc--cccccccccEEeecCCccccc
Q 039990 477 LLPKCKKLRVLSLEKDNIAEVPISIGCLKCLPEAITSLFNLEILILSYCWCLLKLPS--SIGNLVNLHHLDIEGADRLCE 554 (1217)
Q Consensus 477 ~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~lp~~i~~L~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L~l~~~~~l~~ 554 (1217)
+..+|+.|.||.|+-|+|+.+. .+...++|+.|.|+.| .|..+-+ .+.+|++|+.|.|..|+-...
T Consensus 36 ic~kMp~lEVLsLSvNkIssL~-----------pl~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~LWL~ENPCc~~ 103 (388)
T KOG2123|consen 36 ICEKMPLLEVLSLSVNKISSLA-----------PLQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTLWLDENPCCGE 103 (388)
T ss_pred HHHhcccceeEEeeccccccch-----------hHHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhHhhccCCcccc
Confidence 3567888888888888888753 3778888888888887 6666643 257788888888887743333
Q ss_pred cCCC-----CccCccccccc
Q 039990 555 LPLG-----MKELKCLRTLT 569 (1217)
Q Consensus 555 lp~~-----i~~L~~L~~L~ 569 (1217)
-+.. +.-|.+|+.|+
T Consensus 104 ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 104 AGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred cchhHHHHHHHHcccchhcc
Confidence 3322 34455555555
No 379
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=91.20 E-value=1.5 Score=50.99 Aligned_cols=176 Identities=13% Similarity=0.118 Sum_probs=91.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhcc-ccCCCCCeEEEEeCCcccHHHHHHHHH
Q 039990 79 PAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDK-LTDDFKPKAWVCVSDDFDILRISKAIL 157 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~-~~~~F~~~~wv~~~~~~~~~~~~~~i~ 157 (1217)
+++||-+.....|...+....- .......|.-|+||||+|+-++... .... .....+..=...++|.
T Consensus 16 ~evvGQe~v~~~L~nal~~~ri-----~hAYlfsG~RGvGKTt~Ari~AkalNC~~~-------~~~ePC~~C~~Ck~I~ 83 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGRI-----AHAYLFSGPRGVGKTTIARILAKALNCENG-------PTAEPCGKCISCKEIN 83 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCcc-----hhhhhhcCCCCcCchhHHHHHHHHhcCCCC-------CCCCcchhhhhhHhhh
Confidence 4679999999999998876532 2455678999999999999887654 2221 0011111111112221
Q ss_pred HH-----hhcCCCCCCChhHHHHHHHHHH----Hhc-----Cc-----CHHHHHHhhcccCCCCCCcEEEEEcCc-hHHH
Q 039990 158 ES-----ITRSSCGLTDLNSVQLKLKEAV----FKK-----NK-----SYELWQALKSPFMAGAPGSRIIVTTRS-MDVA 217 (1217)
Q Consensus 158 ~~-----l~~~~~~~~~~~~~~~~l~~~l----~~~-----~~-----~~~~~~~l~~~~~~~~~gs~ilvTtR~-~~v~ 217 (1217)
.. +..+......+++......+.. .++ +| ....|..+..-+.--....+.|..|.+ +.+.
T Consensus 84 ~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip 163 (515)
T COG2812 84 EGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIP 163 (515)
T ss_pred cCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCc
Confidence 11 0000001112222221111111 111 22 235577766655444445555554444 3333
Q ss_pred -HhhCCCceEeccCCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhccCC
Q 039990 218 -LKMGSGKNYELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGL 270 (1217)
Q Consensus 218 -~~~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 270 (1217)
........|..+.++.++-...+...+-... -...++....|++..+|.
T Consensus 164 ~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~----I~~e~~aL~~ia~~a~Gs 213 (515)
T COG2812 164 NTILSRCQRFDFKRLDLEEIAKHLAAILDKEG----INIEEDALSLIARAAEGS 213 (515)
T ss_pred hhhhhccccccccCCCHHHHHHHHHHHHHhcC----CccCHHHHHHHHHHcCCC
Confidence 2223446889999999988888877663322 122244556666666663
No 380
>PRK13975 thymidylate kinase; Provisional
Probab=91.20 E-value=0.16 Score=52.02 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=21.4
Q ss_pred EEEEEEccCCchHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
..|+|.|+.|+||||+|+.+++.
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~ 25 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEK 25 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999998876
No 381
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=91.16 E-value=1.2 Score=49.41 Aligned_cols=26 Identities=27% Similarity=0.267 Sum_probs=22.1
Q ss_pred CcEEEEEEccCCchHHHHHHHHHhcc
Q 039990 105 NFRVIPLVGMGGIGKTTLAQEVYNDK 130 (1217)
Q Consensus 105 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 130 (1217)
-...+.++|+.|+|||++|..+++..
T Consensus 20 ~~hA~Lf~G~~G~GK~~la~~~a~~l 45 (325)
T PRK08699 20 RPNAWLFAGKKGIGKTAFARFAAQAL 45 (325)
T ss_pred cceEEEeECCCCCCHHHHHHHHHHHH
Confidence 34678899999999999999987763
No 382
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=91.16 E-value=0.4 Score=52.06 Aligned_cols=43 Identities=21% Similarity=0.238 Sum_probs=32.1
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 79 PAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
+.++=..+....++..+... +.|.|.|.+|+||||+|++++..
T Consensus 45 ~~y~f~~~~~~~vl~~l~~~--------~~ilL~G~pGtGKTtla~~lA~~ 87 (327)
T TIGR01650 45 PAYLFDKATTKAICAGFAYD--------RRVMVQGYHGTGKSTHIEQIAAR 87 (327)
T ss_pred CCccCCHHHHHHHHHHHhcC--------CcEEEEeCCCChHHHHHHHHHHH
Confidence 34554555566677777542 46889999999999999999875
No 383
>PRK00300 gmk guanylate kinase; Provisional
Probab=91.15 E-value=0.16 Score=52.62 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=21.3
Q ss_pred EEEEEEccCCchHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.+|+|+|+.|+||||||+.++..
T Consensus 6 ~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 6 LLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 68999999999999999998875
No 384
>PRK06526 transposase; Provisional
Probab=91.14 E-value=0.22 Score=52.77 Aligned_cols=29 Identities=24% Similarity=0.233 Sum_probs=23.1
Q ss_pred EEEEEEccCCchHHHHHHHHHhccccCCC
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDKLTDDF 135 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~F 135 (1217)
.-+.|+|.+|+|||+||.++.....+..+
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~~~g~ 127 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRACQAGH 127 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHCCC
Confidence 46889999999999999998876433334
No 385
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=91.10 E-value=0.19 Score=62.42 Aligned_cols=52 Identities=29% Similarity=0.438 Sum_probs=39.4
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 78 EPAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 78 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
+.+.+|.++.+++|++++......+.....++.++|++|+||||+|+.++..
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~ 372 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKA 372 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999998886421111022357999999999999999998865
No 386
>PRK13946 shikimate kinase; Provisional
Probab=91.05 E-value=0.16 Score=51.21 Aligned_cols=24 Identities=33% Similarity=0.513 Sum_probs=21.8
Q ss_pred cEEEEEEccCCchHHHHHHHHHhc
Q 039990 106 FRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 106 ~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.+.|.++|++|+||||+|+.+.+.
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~ 33 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATM 33 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 367999999999999999999876
No 387
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=91.02 E-value=0.53 Score=50.11 Aligned_cols=50 Identities=22% Similarity=0.228 Sum_probs=39.9
Q ss_pred CCcEEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCcccHHHHHH
Q 039990 104 ANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDFDILRISK 154 (1217)
Q Consensus 104 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 154 (1217)
+.-+++=|+|+.|.||||+|.+++-. .+..-..++||+....+++..+.+
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~~-aq~~g~~a~fIDtE~~l~p~r~~~ 107 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVAN-AQKPGGKAAFIDTEHALDPERAKQ 107 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHHH-hhcCCCeEEEEeCCCCCCHHHHHH
Confidence 44589999999999999999998766 444455889999988888765443
No 388
>PRK07952 DNA replication protein DnaC; Validated
Probab=91.01 E-value=0.27 Score=51.56 Aligned_cols=35 Identities=26% Similarity=0.281 Sum_probs=26.2
Q ss_pred EEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEE
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVC 142 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~ 142 (1217)
..+.++|.+|+|||+||.++++...+ .-..+++++
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~-~g~~v~~it 134 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLL-RGKSVLIIT 134 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHh-cCCeEEEEE
Confidence 46889999999999999999987422 223455554
No 389
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=91.00 E-value=0.14 Score=50.67 Aligned_cols=21 Identities=33% Similarity=0.604 Sum_probs=18.7
Q ss_pred EEEEccCCchHHHHHHHHHhc
Q 039990 109 IPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 109 v~I~G~gGiGKTtLA~~v~~~ 129 (1217)
|.|+|++|+||||+|+.+.+.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~ 21 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHR 21 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999998875
No 390
>PRK05973 replicative DNA helicase; Provisional
Probab=90.98 E-value=0.41 Score=49.75 Aligned_cols=46 Identities=15% Similarity=0.164 Sum_probs=31.6
Q ss_pred EEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCcccHHHHHHH
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDFDILRISKA 155 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 155 (1217)
.++.|.|.+|+|||++|.++...-.+. =..+++++.... ..++...
T Consensus 65 sl~LIaG~PG~GKT~lalqfa~~~a~~-Ge~vlyfSlEes--~~~i~~R 110 (237)
T PRK05973 65 DLVLLGARPGHGKTLLGLELAVEAMKS-GRTGVFFTLEYT--EQDVRDR 110 (237)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhc-CCeEEEEEEeCC--HHHHHHH
Confidence 588899999999999999987653333 235667766554 3444444
No 391
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=90.96 E-value=0.16 Score=50.14 Aligned_cols=21 Identities=33% Similarity=0.398 Sum_probs=17.2
Q ss_pred EEEEccCCchHHHHHHHHHhc
Q 039990 109 IPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 109 v~I~G~gGiGKTtLA~~v~~~ 129 (1217)
|+|+|..|+|||||++++...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999998864
No 392
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=90.96 E-value=0.19 Score=51.04 Aligned_cols=37 Identities=30% Similarity=0.427 Sum_probs=27.0
Q ss_pred EEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCc
Q 039990 109 IPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDD 146 (1217)
Q Consensus 109 v~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~ 146 (1217)
+.|.|.+|+|||++|.++.....+.. ..++|++....
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g-~~v~~~s~e~~ 38 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARG-EPGLYVTLEES 38 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCC-CcEEEEECCCC
Confidence 67899999999999999776533222 45778876543
No 393
>PRK13768 GTPase; Provisional
Probab=90.94 E-value=0.27 Score=52.44 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=20.4
Q ss_pred EEEEEEccCCchHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.++.|.|.||+||||+|..+...
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~ 25 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDW 25 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHH
Confidence 68899999999999999887765
No 394
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=90.93 E-value=0.18 Score=51.12 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=20.6
Q ss_pred EEEEEEccCCchHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.+|+|+|+.|+|||||++.++..
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 47899999999999999998764
No 395
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=90.89 E-value=0.17 Score=52.64 Aligned_cols=23 Identities=43% Similarity=0.697 Sum_probs=19.9
Q ss_pred EEEEEEccCCchHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
++|+|.|-||+||||++..++..
T Consensus 1 ~~iav~gKGGvGKTt~~~nLA~~ 23 (212)
T cd02117 1 RQIAIYGKGGIGKSTTSQNLSAA 23 (212)
T ss_pred CEEEEECCCcCcHHHHHHHHHHH
Confidence 47899999999999999887765
No 396
>PRK14527 adenylate kinase; Provisional
Probab=90.79 E-value=0.2 Score=51.10 Aligned_cols=24 Identities=29% Similarity=0.457 Sum_probs=21.7
Q ss_pred cEEEEEEccCCchHHHHHHHHHhc
Q 039990 106 FRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 106 ~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
..+|.|.|.+|.||||+|+.+++.
T Consensus 6 ~~~i~i~G~pGsGKsT~a~~La~~ 29 (191)
T PRK14527 6 NKVVIFLGPPGAGKGTQAERLAQE 29 (191)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998865
No 397
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=90.78 E-value=0.7 Score=45.26 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=19.7
Q ss_pred cEEEEEEccCCchHHHHHHHHHh
Q 039990 106 FRVIPLVGMGGIGKTTLAQEVYN 128 (1217)
Q Consensus 106 ~~vv~I~G~gGiGKTtLA~~v~~ 128 (1217)
.-+|||.|+.-.||||||+.+..
T Consensus 4 ~~ivgiSG~TnsGKTTLak~l~~ 26 (225)
T KOG3308|consen 4 TLIVGISGCTNSGKTTLAKSLHR 26 (225)
T ss_pred EEEEEeecccCCCHhHHHHHHHH
Confidence 35899999999999999998654
No 398
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=90.77 E-value=0.14 Score=28.35 Aligned_cols=16 Identities=50% Similarity=0.480 Sum_probs=7.1
Q ss_pred cCcEEeccccccccccc
Q 039990 516 NLEILILSYCWCLLKLP 532 (1217)
Q Consensus 516 ~L~~L~L~~~~~l~~lp 532 (1217)
+|+.|+|++| .++++|
T Consensus 2 ~L~~L~l~~n-~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNN-RLTSLP 17 (17)
T ss_dssp T-SEEEETSS---SSE-
T ss_pred ccCEEECCCC-CCCCCc
Confidence 4666666666 355544
No 399
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=90.75 E-value=0.33 Score=58.01 Aligned_cols=47 Identities=19% Similarity=0.241 Sum_probs=34.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 79 PAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
+..+.|.+..+.|.+..-... ....+|.|+|++|+||||+|+.++..
T Consensus 369 P~~f~rpeV~~iL~~~~~~r~----~~g~~Ivl~Gl~GSGKSTia~~La~~ 415 (568)
T PRK05537 369 PEWFSFPEVVAELRRTYPPRH----KQGFTVFFTGLSGAGKSTIAKALMVK 415 (568)
T ss_pred ChhhcHHHHHHHHHHHhcccc----CCCeEEEEECCCCChHHHHHHHHHHH
Confidence 445666666665555544332 33468999999999999999999876
No 400
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=90.73 E-value=0.7 Score=48.72 Aligned_cols=40 Identities=23% Similarity=0.286 Sum_probs=29.6
Q ss_pred cEEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCc
Q 039990 106 FRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDD 146 (1217)
Q Consensus 106 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~ 146 (1217)
-..+.|.|.+|+|||++|.++.....+ .-..++|++....
T Consensus 20 G~~~~i~G~~G~GKT~l~~~~~~~~~~-~g~~~~~is~e~~ 59 (229)
T TIGR03881 20 GFFVAVTGEPGTGKTIFCLHFAYKGLR-DGDPVIYVTTEES 59 (229)
T ss_pred CeEEEEECCCCCChHHHHHHHHHHHHh-cCCeEEEEEccCC
Confidence 379999999999999999987654222 2346788876443
No 401
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=90.68 E-value=0.38 Score=48.28 Aligned_cols=42 Identities=26% Similarity=0.354 Sum_probs=28.9
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHh
Q 039990 79 PAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYN 128 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 128 (1217)
.+++|.+..+..+.-..... .-|.++|.+|+|||++|+.+..
T Consensus 3 ~dI~GQe~aKrAL~iAAaG~--------h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAGG--------HHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHCC----------EEEES-CCCTHHHHHHHHHH
T ss_pred hhhcCcHHHHHHHHHHHcCC--------CCeEEECCCCCCHHHHHHHHHH
Confidence 46788877666555444321 4688999999999999999764
No 402
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=90.66 E-value=0.27 Score=51.47 Aligned_cols=26 Identities=38% Similarity=0.623 Sum_probs=22.1
Q ss_pred EEEEEEccCCchHHHHHHHHHhcccc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDKLT 132 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 132 (1217)
.-|+|+|++|+|||||+.++.++...
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~ 31 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFP 31 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCc
Confidence 46789999999999999998877533
No 403
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=90.60 E-value=0.26 Score=47.20 Aligned_cols=26 Identities=31% Similarity=0.413 Sum_probs=22.6
Q ss_pred CcEEEEEEccCCchHHHHHHHHHhcc
Q 039990 105 NFRVIPLVGMGGIGKTTLAQEVYNDK 130 (1217)
Q Consensus 105 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 130 (1217)
...+|-..|.+|.||||+|.+++...
T Consensus 22 ~~~viW~TGLSGsGKSTiA~ale~~L 47 (197)
T COG0529 22 KGAVIWFTGLSGSGKSTIANALEEKL 47 (197)
T ss_pred CCeEEEeecCCCCCHHHHHHHHHHHH
Confidence 34799999999999999999988763
No 404
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=90.53 E-value=1.1 Score=51.43 Aligned_cols=76 Identities=16% Similarity=0.091 Sum_probs=41.5
Q ss_pred hHHHHHHHHhcCCCC---CCCCcEEEEEEccCCchHHHHHHHHHhccc-cCCCCCeEEEEeCCc-ccHHHHHHHHHHHhh
Q 039990 87 DKARILDMVLKNDPS---DAANFRVIPLVGMGGIGKTTLAQEVYNDKL-TDDFKPKAWVCVSDD-FDILRISKAILESIT 161 (1217)
Q Consensus 87 ~~~~l~~~L~~~~~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~-~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~ 161 (1217)
-.+++.+.+...... ....+.++.++|.+|+||||.|..++.... +..+ .++-|++... ....+-++..++..+
T Consensus 77 v~~eL~~~l~~~~~~~~~~~~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~-kV~lV~~D~~R~~a~~QL~~~a~~~g 155 (428)
T TIGR00959 77 VHEELVAILGGENASLNLAKKPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGK-KVLLVACDLYRPAAIEQLKVLGQQVG 155 (428)
T ss_pred HHHHHHHHhCCCCcccccCCCCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCC-eEEEEeccccchHHHHHHHHHHHhcC
Confidence 345556666432210 013468999999999999999988876521 2222 3444544321 122333444455554
Q ss_pred cC
Q 039990 162 RS 163 (1217)
Q Consensus 162 ~~ 163 (1217)
.+
T Consensus 156 vp 157 (428)
T TIGR00959 156 VP 157 (428)
T ss_pred Cc
Confidence 43
No 405
>PRK13695 putative NTPase; Provisional
Probab=90.51 E-value=0.22 Score=49.78 Aligned_cols=22 Identities=36% Similarity=0.487 Sum_probs=19.9
Q ss_pred EEEEEccCCchHHHHHHHHHhc
Q 039990 108 VIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 108 vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.|+|+|.+|+|||||++.+++.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998876
No 406
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=90.51 E-value=0.38 Score=52.90 Aligned_cols=38 Identities=26% Similarity=0.431 Sum_probs=28.0
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 88 KARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 88 ~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
..++.+.+.... ....+|+|.|.+|+|||||+..+...
T Consensus 42 ~~~l~~~~~~~~----~~~~~igi~G~~GaGKSTl~~~l~~~ 79 (332)
T PRK09435 42 AQELLDALLPHT----GNALRIGITGVPGVGKSTFIEALGMH 79 (332)
T ss_pred HHHHHHHHhhcC----CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 345555554321 44689999999999999999987765
No 407
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=90.43 E-value=1 Score=45.55 Aligned_cols=89 Identities=13% Similarity=0.115 Sum_probs=48.4
Q ss_pred EEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCcc-cHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhcC
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDF-DILRISKAILESITRSSCGLTDLNSVQLKLKEAVFKKN 185 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 185 (1217)
..|+|+|..|.|||||.+.+..- +... .+.+.+...+.. -...-++++..+++.-. ...+.-.....+...+.++.
T Consensus 31 E~VaiIG~SGaGKSTLLR~lngl-~d~t-~G~i~~~g~~i~~~~~k~lr~~r~~iGmIf-Q~~nLv~r~sv~~NVl~grl 107 (258)
T COG3638 31 EMVAIIGPSGAGKSTLLRSLNGL-VDPT-SGEILFNGVQITKLKGKELRKLRRDIGMIF-QQFNLVPRLSVLENVLLGRL 107 (258)
T ss_pred cEEEEECCCCCcHHHHHHHHhcc-cCCC-cceEEecccchhccchHHHHHHHHhceeEe-ccCCcccccHHHHHHHhhhc
Confidence 48999999999999999997653 2222 223333321111 12233344444443221 11222223445566667776
Q ss_pred cCHHHHHHhhccc
Q 039990 186 KSYELWQALKSPF 198 (1217)
Q Consensus 186 ~~~~~~~~l~~~~ 198 (1217)
.....|..+...+
T Consensus 108 ~~~s~~~slfglf 120 (258)
T COG3638 108 GYTSTWRSLFGLF 120 (258)
T ss_pred ccchHHHHHhCCC
Confidence 7777777765544
No 408
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=90.41 E-value=0.21 Score=51.83 Aligned_cols=23 Identities=43% Similarity=0.677 Sum_probs=20.1
Q ss_pred EEEEEEcc-CCchHHHHHHHHHhc
Q 039990 107 RVIPLVGM-GGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~-gGiGKTtLA~~v~~~ 129 (1217)
++|+|+|. ||+||||++..++.-
T Consensus 2 ~~iai~s~kGGvG~TTltAnLA~a 25 (243)
T PF06564_consen 2 KVIAIVSPKGGVGKTTLTANLAWA 25 (243)
T ss_pred cEEEEecCCCCCCHHHHHHHHHHH
Confidence 58999996 899999999998765
No 409
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.38 E-value=0.045 Score=53.43 Aligned_cols=70 Identities=17% Similarity=0.208 Sum_probs=43.4
Q ss_pred cccCCcccceeeccCCCccccccccccCCCCCCcceEeecCCCCCcccCccccCCcccccccccccccCcc
Q 039990 1094 FDKFSSLRKHCINRCSDAVSFPEVEKGVILPTSLTLIRISDFPKLERLSSKGFHYLLSLEQLKVSSCPNFT 1164 (1217)
Q Consensus 1094 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~L~~L~l~~c~~l~ 1164 (1217)
+..+++++.|.+.+|..+....- +.--...++|+.|+|++|+++++---..+..+++|+.|.|.+-+.+.
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L-~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCL-ERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYVA 190 (221)
T ss_pred HhccchhhhheeccccchhhHHH-HHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhhh
Confidence 45566666667777666554332 11112457788888888877777554556677777777777655443
No 410
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=90.38 E-value=0.59 Score=47.63 Aligned_cols=44 Identities=23% Similarity=0.201 Sum_probs=27.8
Q ss_pred EEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCcccHHHH
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDFDILRI 152 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~~~~~~~ 152 (1217)
+++.|.|.+|.||||+++.+....... ...+.+......-...+
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~--g~~v~~~apT~~Aa~~L 62 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAA--GKRVIGLAPTNKAAKEL 62 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHT--T--EEEEESSHHHHHHH
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhC--CCeEEEECCcHHHHHHH
Confidence 588899999999999999877653222 23444444444433333
No 411
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=90.37 E-value=0.24 Score=51.18 Aligned_cols=26 Identities=27% Similarity=0.477 Sum_probs=23.6
Q ss_pred CCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 104 ANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 104 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.++++|+++|..|+|||||..++.+.
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 56899999999999999999998875
No 412
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=90.23 E-value=0.36 Score=47.25 Aligned_cols=48 Identities=27% Similarity=0.283 Sum_probs=35.1
Q ss_pred cEEEEEEccCCchHHHHHHHHHhccccCCCC-CeEEEEeCCcccHHHHHH
Q 039990 106 FRVIPLVGMGGIGKTTLAQEVYNDKLTDDFK-PKAWVCVSDDFDILRISK 154 (1217)
Q Consensus 106 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~-~~~wv~~~~~~~~~~~~~ 154 (1217)
..+|+|-|.+|+|||+|..+.+++ .++.|. .++=.++....|...+.+
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~-L~~~~~~aVI~~Di~t~~Da~~l~~ 61 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRA-LKDEYKIAVITGDIYTKEDADRLRK 61 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHH-HHhhCCeEEEeceeechhhHHHHHh
Confidence 479999999999999999999987 666676 344445555555555544
No 413
>PRK12338 hypothetical protein; Provisional
Probab=90.21 E-value=0.24 Score=53.60 Aligned_cols=24 Identities=38% Similarity=0.451 Sum_probs=22.1
Q ss_pred cEEEEEEccCCchHHHHHHHHHhc
Q 039990 106 FRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 106 ~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
+.+|.|.|.+|+||||+|++++..
T Consensus 4 p~ii~i~G~sGsGKST~a~~la~~ 27 (319)
T PRK12338 4 PYVILIGSASGIGKSTIASELART 27 (319)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 479999999999999999998876
No 414
>PRK04182 cytidylate kinase; Provisional
Probab=90.20 E-value=0.22 Score=50.22 Aligned_cols=22 Identities=36% Similarity=0.533 Sum_probs=20.5
Q ss_pred EEEEEccCCchHHHHHHHHHhc
Q 039990 108 VIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 108 vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
+|+|.|+.|.||||+|+.++..
T Consensus 2 ~I~i~G~~GsGKstia~~la~~ 23 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999875
No 415
>PRK08116 hypothetical protein; Validated
Probab=90.20 E-value=0.19 Score=53.97 Aligned_cols=35 Identities=31% Similarity=0.287 Sum_probs=26.4
Q ss_pred EEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEE
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVC 142 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~ 142 (1217)
..+.++|.+|+|||.||.++++...+. -..+++++
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~-~~~v~~~~ 149 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEK-GVPVIFVN 149 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEE
Confidence 358899999999999999999874323 33455665
No 416
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=90.18 E-value=0.12 Score=49.89 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=20.5
Q ss_pred EEEEEEccCCchHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
+-|.++||.|+||||+.+++++.
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~ 25 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKA 25 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHH
Confidence 35788999999999999999876
No 417
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=90.16 E-value=0.23 Score=46.59 Aligned_cols=24 Identities=46% Similarity=0.659 Sum_probs=20.6
Q ss_pred EEEEEEccCCchHHHHHHHHHhcc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDK 130 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~ 130 (1217)
+.|.++|..|.|||||++++-...
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~ 25 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEE 25 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCC
Confidence 467899999999999999987653
No 418
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=90.13 E-value=0.23 Score=49.58 Aligned_cols=35 Identities=26% Similarity=0.434 Sum_probs=25.7
Q ss_pred EEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEE
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVC 142 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~ 142 (1217)
.-+.|+|.+|+|||.||.++.+..+...+. +.|+.
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~~~g~~-v~f~~ 82 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAIRKGYS-VLFIT 82 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT---EEEEE
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhccCCcc-eeEee
Confidence 568999999999999999998865444443 55664
No 419
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=90.12 E-value=7.4 Score=46.11 Aligned_cols=83 Identities=17% Similarity=0.121 Sum_probs=57.3
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhcc----c---cCCCCCeEEEEeCCcccHHHH
Q 039990 80 AVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDK----L---TDDFKPKAWVCVSDDFDILRI 152 (1217)
Q Consensus 80 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~----~---~~~F~~~~wv~~~~~~~~~~~ 152 (1217)
.+-+|+.+..+|-..+..--..+ ..-..+-|.|.+|.|||+.+..|.+.. . -..|+ .+.|....-..+.++
T Consensus 397 sLpcRe~E~~~I~~f~~~~i~~~-~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~~ 474 (767)
T KOG1514|consen 397 SLPCRENEFSEIEDFLRSFISDQ-GLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPREI 474 (767)
T ss_pred cccchhHHHHHHHHHHHhhcCCC-CCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHHH
Confidence 35678988888877765422111 223589999999999999999998742 1 12343 334555555578999
Q ss_pred HHHHHHHhhcCC
Q 039990 153 SKAILESITRSS 164 (1217)
Q Consensus 153 ~~~i~~~l~~~~ 164 (1217)
+..|.+++.+..
T Consensus 475 Y~~I~~~lsg~~ 486 (767)
T KOG1514|consen 475 YEKIWEALSGER 486 (767)
T ss_pred HHHHHHhcccCc
Confidence 999999997654
No 420
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=90.10 E-value=0.39 Score=50.97 Aligned_cols=51 Identities=22% Similarity=0.242 Sum_probs=31.7
Q ss_pred EEEEEccCCchHHHHHHHHHhccc------cCCCCCeEEEEeCCcccHHHHHHHHHH
Q 039990 108 VIPLVGMGGIGKTTLAQEVYNDKL------TDDFKPKAWVCVSDDFDILRISKAILE 158 (1217)
Q Consensus 108 vv~I~G~gGiGKTtLA~~v~~~~~------~~~F~~~~wv~~~~~~~~~~~~~~i~~ 158 (1217)
+..|+|++|.|||+++..+..... ...-+..+-+....+..+..+...+.+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 688999999999987777666521 133445566666666666666665554
No 421
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=90.10 E-value=0.52 Score=49.35 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=19.7
Q ss_pred EEEEEccCCchHHHHHHHHHhc
Q 039990 108 VIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 108 vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
+|+|.|.+|.||||+|+++.+.
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~ 22 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHI 22 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999987764
No 422
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=90.09 E-value=0.22 Score=44.01 Aligned_cols=22 Identities=50% Similarity=0.755 Sum_probs=19.5
Q ss_pred EEEEEccCCchHHHHHHHHHhc
Q 039990 108 VIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 108 vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
++.+.|.+|+||||+|..++..
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~ 22 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAA 22 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999998876
No 423
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=90.08 E-value=0.45 Score=51.00 Aligned_cols=39 Identities=21% Similarity=0.400 Sum_probs=29.5
Q ss_pred cEEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCC
Q 039990 106 FRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSD 145 (1217)
Q Consensus 106 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~ 145 (1217)
-.++.|.|.+|+|||++|.+++....+. =..+++++...
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a~~-Ge~vlyis~Ee 74 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQASR-GNPVLFVTVES 74 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhC-CCcEEEEEecC
Confidence 4799999999999999999976642222 24678888754
No 424
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=90.06 E-value=0.19 Score=53.79 Aligned_cols=21 Identities=38% Similarity=0.727 Sum_probs=19.3
Q ss_pred EEEEccCCchHHHHHHHHHhc
Q 039990 109 IPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 109 v~I~G~gGiGKTtLA~~v~~~ 129 (1217)
|.++|.+|+||||+|+++...
T Consensus 2 Ivl~G~pGSGKST~a~~La~~ 22 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKK 22 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 789999999999999998875
No 425
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=90.04 E-value=2.4 Score=47.51 Aligned_cols=26 Identities=31% Similarity=0.151 Sum_probs=22.6
Q ss_pred CCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 104 ANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 104 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
..+-+|+|.|..|.|||||++.+..-
T Consensus 210 ~~PlIIGIsG~qGSGKSTLa~~L~~l 235 (460)
T PLN03046 210 IPPLVIGFSAPQGCGKTTLVFALDYL 235 (460)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45689999999999999999998643
No 426
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=90.00 E-value=0.65 Score=51.40 Aligned_cols=55 Identities=24% Similarity=0.177 Sum_probs=39.5
Q ss_pred cEEEEEEccCCchHHHHHHHHHhcc-cc---CC-CCCeEEEEeCCcccHHHHHHHHHHHhh
Q 039990 106 FRVIPLVGMGGIGKTTLAQEVYNDK-LT---DD-FKPKAWVCVSDDFDILRISKAILESIT 161 (1217)
Q Consensus 106 ~~vv~I~G~gGiGKTtLA~~v~~~~-~~---~~-F~~~~wv~~~~~~~~~~~~~~i~~~l~ 161 (1217)
-.+.-|+|.+|+|||+||.+++-.. .. .. -..++||+....|+..++.+ +++.++
T Consensus 126 G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g 185 (344)
T PLN03187 126 RCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFG 185 (344)
T ss_pred CeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcC
Confidence 3788899999999999999876432 21 11 24688999988888777655 445443
No 427
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=90.00 E-value=0.22 Score=54.29 Aligned_cols=40 Identities=23% Similarity=0.192 Sum_probs=27.6
Q ss_pred EEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCcc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDF 147 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~~ 147 (1217)
++|+|+|-|||||||+|..++....+..+ .+.-|+.....
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~La~~G~-rVLliD~Dpq~ 41 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAALAESGK-KVLVVGCDPKA 41 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHhCCC-EEEEEeeCCcc
Confidence 57889999999999999887765333333 25555554443
No 428
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=89.99 E-value=0.59 Score=51.31 Aligned_cols=55 Identities=22% Similarity=0.233 Sum_probs=39.1
Q ss_pred cEEEEEEccCCchHHHHHHHHHhcc-ccC---C-CCCeEEEEeCCcccHHHHHHHHHHHhh
Q 039990 106 FRVIPLVGMGGIGKTTLAQEVYNDK-LTD---D-FKPKAWVCVSDDFDILRISKAILESIT 161 (1217)
Q Consensus 106 ~~vv~I~G~gGiGKTtLA~~v~~~~-~~~---~-F~~~~wv~~~~~~~~~~~~~~i~~~l~ 161 (1217)
-+++-|+|.+|+|||++|.+++-.. ... . =..++||+....|+..++.+ +++.++
T Consensus 96 G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g 155 (313)
T TIGR02238 96 MSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFG 155 (313)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcC
Confidence 3789999999999999998866431 111 1 13688999988888777654 455543
No 429
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=89.99 E-value=0.22 Score=48.72 Aligned_cols=23 Identities=43% Similarity=0.628 Sum_probs=20.0
Q ss_pred EEEEEEccCCchHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
+.|.+.|.+|+||||+|+++++.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~ 24 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKE 24 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHH
Confidence 35778999999999999998865
No 430
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=89.97 E-value=0.33 Score=52.80 Aligned_cols=43 Identities=28% Similarity=0.267 Sum_probs=29.8
Q ss_pred EEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCcccHH
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDFDIL 150 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~~~~~ 150 (1217)
++|+|.|-||+||||+|..++....+..+ .++-|+.....+..
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~~La~~G~-kVlliD~Dpq~n~~ 44 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSAALAEMGK-KVMIVGCDPKADST 44 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHHHHHhCCC-eEEEEEcCCCCCch
Confidence 57888899999999999988765322222 35667766554433
No 431
>PRK08181 transposase; Validated
Probab=89.96 E-value=0.19 Score=53.60 Aligned_cols=35 Identities=20% Similarity=0.159 Sum_probs=26.0
Q ss_pred EEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEE
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVC 142 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~ 142 (1217)
.-+.++|.+|+|||.||.++.+...... ..++|++
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g-~~v~f~~ 141 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENG-WRVLFTR 141 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcC-Cceeeee
Confidence 3588999999999999999987633332 3455665
No 432
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=89.96 E-value=0.28 Score=51.49 Aligned_cols=31 Identities=26% Similarity=0.295 Sum_probs=20.8
Q ss_pred EEccCCchHHHHHHHHHhccccCCCCCeEEEE
Q 039990 111 LVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVC 142 (1217)
Q Consensus 111 I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~ 142 (1217)
|+|++|+||||+++.+.+. ....-..++-|.
T Consensus 1 ViGpaGSGKTT~~~~~~~~-~~~~~~~~~~vN 31 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEW-LESNGRDVYIVN 31 (238)
T ss_dssp -EESTTSSHHHHHHHHHHH-HTTT-S-EEEEE
T ss_pred CCCCCCCCHHHHHHHHHHH-HHhccCCceEEE
Confidence 6899999999999998876 333323344444
No 433
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=89.95 E-value=0.37 Score=49.93 Aligned_cols=40 Identities=28% Similarity=0.300 Sum_probs=26.9
Q ss_pred EEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCcc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDF 147 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~~ 147 (1217)
|.|+|+|-|||||||.|..+.... ...-..+.-|-++...
T Consensus 1 r~IAiYGKGGIGKST~~~Nlsaal-a~~G~kVl~iGCDPK~ 40 (273)
T PF00142_consen 1 RKIAIYGKGGIGKSTTASNLSAAL-AEMGKKVLQIGCDPKA 40 (273)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH-HHTT--EEEEEESSSS
T ss_pred CeEEEEcCCCcccChhhhHHHHHH-HhccceeeEecccCCC
Confidence 579999999999999998877652 2222445666555443
No 434
>CHL00095 clpC Clp protease ATP binding subunit
Probab=89.92 E-value=1.2 Score=56.54 Aligned_cols=51 Identities=16% Similarity=0.269 Sum_probs=37.9
Q ss_pred CccccchhhHHHHHHHHhcCCC---CCCCCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 79 PAVYGRNEDKARILDMVLKNDP---SDAANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
..++|.++.++.+.+.+..... ........+.++|+.|+|||+||+.+++.
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~ 562 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASY 562 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHH
Confidence 5689999999999888753221 11122346778999999999999998875
No 435
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=89.90 E-value=0.46 Score=48.89 Aligned_cols=22 Identities=36% Similarity=0.524 Sum_probs=20.4
Q ss_pred EEEEEccCCchHHHHHHHHHhc
Q 039990 108 VIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 108 vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
+|+|.|+.|+||||+|+.+.+.
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~ 23 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAER 23 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999876
No 436
>PLN02796 D-glycerate 3-kinase
Probab=89.89 E-value=1.2 Score=48.84 Aligned_cols=26 Identities=31% Similarity=0.183 Sum_probs=22.9
Q ss_pred CCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 104 ANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 104 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
..+-+|+|.|..|.||||||+.+...
T Consensus 98 ~~pliIGI~G~sGSGKSTLa~~L~~l 123 (347)
T PLN02796 98 IPPLVIGISAPQGCGKTTLVFALVYL 123 (347)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHH
Confidence 35678999999999999999998865
No 437
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=89.88 E-value=0.68 Score=48.25 Aligned_cols=54 Identities=20% Similarity=0.202 Sum_probs=33.6
Q ss_pred EEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCC-----cccHHHHHHHHHHHhhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSD-----DFDILRISKAILESITR 162 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~-----~~~~~~~~~~i~~~l~~ 162 (1217)
.+++|+|..|.||||+|+.+..= ...-.+.+++...+ .....+-..++++.++.
T Consensus 40 e~~glVGESG~GKSTlgr~i~~L--~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl 98 (268)
T COG4608 40 ETLGLVGESGCGKSTLGRLILGL--EEPTSGEILFEGKDITKLSKEERRERVLELLEKVGL 98 (268)
T ss_pred CEEEEEecCCCCHHHHHHHHHcC--cCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCC
Confidence 58999999999999999998863 33333444443221 12233344555555553
No 438
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=89.87 E-value=0.25 Score=49.36 Aligned_cols=22 Identities=36% Similarity=0.534 Sum_probs=20.3
Q ss_pred EEEEEccCCchHHHHHHHHHhc
Q 039990 108 VIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 108 vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
+|+|.|..|+||||+|+.+.+.
T Consensus 2 iI~i~G~~GSGKstia~~la~~ 23 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEK 23 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999998765
No 439
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=89.86 E-value=0.23 Score=54.04 Aligned_cols=23 Identities=43% Similarity=0.690 Sum_probs=20.0
Q ss_pred EEEEEEccCCchHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
++|+|+|-|||||||+|..++.-
T Consensus 2 ~~iav~gKGGVGKTT~a~nLA~~ 24 (273)
T PRK13232 2 RQIAIYGKGGIGKSTTTQNLTAA 24 (273)
T ss_pred CEEEEECCCCCcHHHHHHHHHHH
Confidence 57888899999999999887764
No 440
>PTZ00088 adenylate kinase 1; Provisional
Probab=89.84 E-value=0.23 Score=51.71 Aligned_cols=22 Identities=36% Similarity=0.522 Sum_probs=19.9
Q ss_pred EEEEEccCCchHHHHHHHHHhc
Q 039990 108 VIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 108 vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.|.|.|++|+||||+|+.+++.
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999998875
No 441
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=89.83 E-value=2.9 Score=51.13 Aligned_cols=73 Identities=18% Similarity=0.191 Sum_probs=44.6
Q ss_pred cEEEEEEccCCchHHHHHHHHHhcc-ccCCCCCeEEEEeCC-cccHHHHHHHHHHHhhcCCCCCCChhHHHHHHH
Q 039990 106 FRVIPLVGMGGIGKTTLAQEVYNDK-LTDDFKPKAWVCVSD-DFDILRISKAILESITRSSCGLTDLNSVQLKLK 178 (1217)
Q Consensus 106 ~~vv~I~G~gGiGKTtLA~~v~~~~-~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 178 (1217)
.++|+++|+.|+||||.+..++... .......+..+.... .....+-++...+.++.+.....+.+++...+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~ 259 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALA 259 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHH
Confidence 4799999999999999998888653 122223455555432 222445566666667655544445555544443
No 442
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=89.82 E-value=0.3 Score=49.34 Aligned_cols=23 Identities=43% Similarity=0.642 Sum_probs=21.2
Q ss_pred EEEEEEccCCchHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
+.|.|+|++|+||+||+..+...
T Consensus 3 r~ivl~Gpsg~GK~tl~~~L~~~ 25 (184)
T smart00072 3 RPIVLSGPSGVGKGTLLAELIQE 25 (184)
T ss_pred cEEEEECCCCCCHHHHHHHHHhc
Confidence 68999999999999999998875
No 443
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=89.81 E-value=0.7 Score=50.92 Aligned_cols=54 Identities=20% Similarity=0.161 Sum_probs=36.8
Q ss_pred cEEEEEEccCCchHHHHHHHHHhcc-cc---C-CCCCeEEEEeCCcccHHHHHHHHHHHh
Q 039990 106 FRVIPLVGMGGIGKTTLAQEVYNDK-LT---D-DFKPKAWVCVSDDFDILRISKAILESI 160 (1217)
Q Consensus 106 ~~vv~I~G~gGiGKTtLA~~v~~~~-~~---~-~F~~~~wv~~~~~~~~~~~~~~i~~~l 160 (1217)
-.++.|+|.+|+|||+||..++... .. . .-..++||+....++...+ .++++.+
T Consensus 96 g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~ 154 (316)
T TIGR02239 96 GSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERY 154 (316)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHc
Confidence 4799999999999999999887531 11 1 1135689998877776653 3344443
No 444
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=89.80 E-value=0.42 Score=56.13 Aligned_cols=59 Identities=17% Similarity=0.275 Sum_probs=42.6
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEE
Q 039990 80 AVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVC 142 (1217)
Q Consensus 80 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~ 142 (1217)
+++--.+-++++..||.....+. ...+++.++|++|.||||.++.+++. -.|+.+=|..
T Consensus 20 eLavhkkKv~eV~~wl~~~~~~~-~~~~iLlLtGP~G~GKtttv~~La~e---lg~~v~Ew~n 78 (519)
T PF03215_consen 20 ELAVHKKKVEEVRSWLEEMFSGS-SPKRILLLTGPSGCGKTTTVKVLAKE---LGFEVQEWIN 78 (519)
T ss_pred HhhccHHHHHHHHHHHHHHhccC-CCcceEEEECCCCCCHHHHHHHHHHH---hCCeeEEecC
Confidence 45555677888888887643222 34579999999999999999998876 2455555753
No 445
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.77 E-value=0.024 Score=56.08 Aligned_cols=82 Identities=16% Similarity=0.122 Sum_probs=67.7
Q ss_pred cCCCCcceEEEcCCCCcccccccccccccChhhhcccccCcEEecccccccccccccccccccccEEeecCCccccccCC
Q 039990 478 LPKCKKLRVLSLEKDNIAEVPISIGCLKCLPEAITSLFNLEILILSYCWCLLKLPSSIGNLVNLHHLDIEGADRLCELPL 557 (1217)
Q Consensus 478 ~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~ 557 (1217)
+..++..++||++.|++..+ -..|+.++.|..||++.| .+..+|.+++.+..++++++..| ..+..|.
T Consensus 38 i~~~kr~tvld~~s~r~vn~----------~~n~s~~t~~~rl~~skn-q~~~~~~d~~q~~e~~~~~~~~n-~~~~~p~ 105 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNL----------GKNFSILTRLVRLDLSKN-QIKFLPKDAKQQRETVNAASHKN-NHSQQPK 105 (326)
T ss_pred hhccceeeeehhhhhHHHhh----------ccchHHHHHHHHHhccHh-hHhhChhhHHHHHHHHHHHhhcc-chhhCCc
Confidence 45667889999998886643 356888899999999987 78899999999999999998888 7889999
Q ss_pred CCccCccccccccc
Q 039990 558 GMKELKCLRTLTDF 571 (1217)
Q Consensus 558 ~i~~L~~L~~L~~~ 571 (1217)
+++++..++.++.-
T Consensus 106 s~~k~~~~k~~e~k 119 (326)
T KOG0473|consen 106 SQKKEPHPKKNEQK 119 (326)
T ss_pred cccccCCcchhhhc
Confidence 88888888877643
No 446
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=89.72 E-value=0.3 Score=48.25 Aligned_cols=23 Identities=35% Similarity=0.684 Sum_probs=20.1
Q ss_pred EEEEEccCCchHHHHHHHHHhcc
Q 039990 108 VIPLVGMGGIGKTTLAQEVYNDK 130 (1217)
Q Consensus 108 vv~I~G~gGiGKTtLA~~v~~~~ 130 (1217)
.|+++|.+|+|||||+.++....
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~ 24 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDE 24 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999987654
No 447
>PRK04328 hypothetical protein; Provisional
Probab=89.67 E-value=0.71 Score=49.15 Aligned_cols=41 Identities=24% Similarity=0.338 Sum_probs=30.8
Q ss_pred cEEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCcc
Q 039990 106 FRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDF 147 (1217)
Q Consensus 106 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~~ 147 (1217)
-.++.|.|.+|.|||+||.++...-. ..=..++||+....+
T Consensus 23 gs~ili~G~pGsGKT~l~~~fl~~~~-~~ge~~lyis~ee~~ 63 (249)
T PRK04328 23 RNVVLLSGGPGTGKSIFSQQFLWNGL-QMGEPGVYVALEEHP 63 (249)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH-hcCCcEEEEEeeCCH
Confidence 37899999999999999999765422 223567888876643
No 448
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=89.65 E-value=0.48 Score=48.03 Aligned_cols=51 Identities=25% Similarity=0.197 Sum_probs=36.4
Q ss_pred CccccchhhHHHHHHHHhcCCCC-------CCCCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 79 PAVYGRNEDKARILDMVLKNDPS-------DAANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
+++-|-.++++++.+.....--. +-+.++-|.++|++|.|||-+|++|+++
T Consensus 177 ~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanr 234 (435)
T KOG0729|consen 177 SDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANR 234 (435)
T ss_pred ccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcc
Confidence 34566777888887765432110 0134577889999999999999999987
No 449
>PRK13236 nitrogenase reductase; Reviewed
Probab=89.63 E-value=0.29 Score=53.65 Aligned_cols=26 Identities=42% Similarity=0.670 Sum_probs=22.4
Q ss_pred CCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 104 ANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 104 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
...++|++.|-|||||||+|..++.-
T Consensus 4 ~~~~~~~~~GKGGVGKTt~a~NLA~~ 29 (296)
T PRK13236 4 ENIRQIAFYGKGGIGKSTTSQNTLAA 29 (296)
T ss_pred cCceEEEEECCCcCCHHHHHHHHHHH
Confidence 45699999999999999999887665
No 450
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=89.62 E-value=0.25 Score=49.35 Aligned_cols=23 Identities=35% Similarity=0.473 Sum_probs=20.4
Q ss_pred EEEEEEccCCchHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
+.|.|+|++|+||||+|+.+.+.
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~ 25 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQA 25 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35788999999999999998876
No 451
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=89.62 E-value=1.7 Score=48.43 Aligned_cols=80 Identities=19% Similarity=0.133 Sum_probs=52.2
Q ss_pred hhHHHHHHHHhcCCCCC---CCCcEEEEEEccCCchHHHHHHHHHhccccCCCCC-eEEEEe-CCcccHHHHHHHHHHHh
Q 039990 86 EDKARILDMVLKNDPSD---AANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKP-KAWVCV-SDDFDILRISKAILESI 160 (1217)
Q Consensus 86 ~~~~~l~~~L~~~~~~~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~-~~wv~~-~~~~~~~~~~~~i~~~l 160 (1217)
--.++|++.|......- ...+.||-.+|.-|.||||.|..+++. .+. +.. +.-|++ ...+...+-++.+++++
T Consensus 77 iV~eELv~llG~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~~-lkk-~~~kvllVaaD~~RpAA~eQL~~La~q~ 154 (451)
T COG0541 77 IVYEELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKY-LKK-KGKKVLLVAADTYRPAAIEQLKQLAEQV 154 (451)
T ss_pred HHHHHHHHHhCCCCcccccCCCCCeEEEEEeccCCChHhHHHHHHHH-HHH-cCCceEEEecccCChHHHHHHHHHHHHc
Confidence 34567777776421111 145789999999999999999998876 343 332 333333 23445667778888998
Q ss_pred hcCCCCC
Q 039990 161 TRSSCGL 167 (1217)
Q Consensus 161 ~~~~~~~ 167 (1217)
+.+....
T Consensus 155 ~v~~f~~ 161 (451)
T COG0541 155 GVPFFGS 161 (451)
T ss_pred CCceecC
Confidence 8776543
No 452
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=89.62 E-value=1.6 Score=52.14 Aligned_cols=31 Identities=32% Similarity=0.336 Sum_probs=24.7
Q ss_pred CCcEEEEEEccCCchHHHHHHHHHhccccCCC
Q 039990 104 ANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDF 135 (1217)
Q Consensus 104 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F 135 (1217)
...+.+-++|++|.|||.||+++++. ....|
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~~-~~~~f 304 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVALE-SRSRF 304 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHhh-CCCeE
Confidence 34568889999999999999999985 33444
No 453
>PRK14532 adenylate kinase; Provisional
Probab=89.60 E-value=0.25 Score=50.29 Aligned_cols=21 Identities=29% Similarity=0.395 Sum_probs=19.1
Q ss_pred EEEEccCCchHHHHHHHHHhc
Q 039990 109 IPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 109 v~I~G~gGiGKTtLA~~v~~~ 129 (1217)
|.|.|++|+||||+|+.++..
T Consensus 3 i~~~G~pGsGKsT~a~~la~~ 23 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEE 23 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999998865
No 454
>PRK08356 hypothetical protein; Provisional
Probab=89.59 E-value=0.31 Score=49.74 Aligned_cols=21 Identities=33% Similarity=0.358 Sum_probs=19.2
Q ss_pred EEEEEEccCCchHHHHHHHHH
Q 039990 107 RVIPLVGMGGIGKTTLAQEVY 127 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~ 127 (1217)
.+|+|+|++|+||||+|+.+.
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~ 26 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFE 26 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 679999999999999999973
No 455
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=89.58 E-value=0.27 Score=48.98 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=21.1
Q ss_pred EEEEEEccCCchHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.+++|+|..|.||||+++.++..
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~ 26 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAAL 26 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 48899999999999999998875
No 456
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=89.57 E-value=0.31 Score=53.16 Aligned_cols=26 Identities=19% Similarity=0.249 Sum_probs=24.1
Q ss_pred CCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 104 ANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 104 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
..++.++|||++|.|||.+|+++++.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 55789999999999999999999987
No 457
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=89.56 E-value=0.24 Score=50.67 Aligned_cols=21 Identities=38% Similarity=0.476 Sum_probs=19.3
Q ss_pred EEEEccCCchHHHHHHHHHhc
Q 039990 109 IPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 109 v~I~G~gGiGKTtLA~~v~~~ 129 (1217)
|.|.|++|+||||+|+.++..
T Consensus 2 I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998875
No 458
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=89.54 E-value=0.42 Score=52.58 Aligned_cols=26 Identities=27% Similarity=0.408 Sum_probs=22.8
Q ss_pred CCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 104 ANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 104 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
....+|+|.|.+|+|||||+..+...
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~ 57 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGME 57 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHH
Confidence 44689999999999999999998765
No 459
>PRK14531 adenylate kinase; Provisional
Probab=89.53 E-value=0.27 Score=49.63 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=20.5
Q ss_pred EEEEEEccCCchHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
+.|.|.|++|.||||+|+.++..
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~ 25 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAA 25 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 36889999999999999998875
No 460
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=89.52 E-value=0.47 Score=51.33 Aligned_cols=40 Identities=25% Similarity=0.341 Sum_probs=29.1
Q ss_pred EEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCccc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDFD 148 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~~~ 148 (1217)
++|+|.|-||+||||+|..++....+.. .+.-|++....+
T Consensus 3 ~~iav~~KGGvGKTT~a~nLA~~La~~G--rVLliD~Dpq~~ 42 (264)
T PRK13231 3 KKIAIYGKGGIGKSTTVSNMAAAYSNDH--RVLVIGCDPKAD 42 (264)
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCCCC--EEEEEeEccCcc
Confidence 6889999999999999999887643333 355666654443
No 461
>PRK09183 transposase/IS protein; Provisional
Probab=89.48 E-value=0.28 Score=52.37 Aligned_cols=23 Identities=39% Similarity=0.524 Sum_probs=20.4
Q ss_pred EEEEEEccCCchHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
..|.|+|.+|+|||+||.++...
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~ 125 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYE 125 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHH
Confidence 46789999999999999998765
No 462
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=89.46 E-value=0.4 Score=52.70 Aligned_cols=25 Identities=36% Similarity=0.489 Sum_probs=22.6
Q ss_pred CcEEEEEEccCCchHHHHHHHHHhc
Q 039990 105 NFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 105 ~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
...+++++|++|+||||++..++..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~ 137 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHK 137 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4689999999999999999998876
No 463
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=89.44 E-value=0.32 Score=47.30 Aligned_cols=23 Identities=43% Similarity=0.665 Sum_probs=21.3
Q ss_pred EEEEEEccCCchHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
++++|+|..|+|||||+..+...
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~ 24 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPA 24 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999998875
No 464
>PRK10867 signal recognition particle protein; Provisional
Probab=89.40 E-value=0.78 Score=52.52 Aligned_cols=74 Identities=23% Similarity=0.215 Sum_probs=41.1
Q ss_pred HHHHHHHHhcCCCC---CCCCcEEEEEEccCCchHHHHHHHHHhccccCCC-CCeEEEEeCCc-ccHHHHHHHHHHHhhc
Q 039990 88 KARILDMVLKNDPS---DAANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDF-KPKAWVCVSDD-FDILRISKAILESITR 162 (1217)
Q Consensus 88 ~~~l~~~L~~~~~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F-~~~~wv~~~~~-~~~~~~~~~i~~~l~~ 162 (1217)
.+++.+.+...... ....+.+|.++|.+|+||||.|..++.. .+... ..++.|++... ....+-++..++..+.
T Consensus 79 ~~el~~~l~~~~~~~~~~~~~p~vI~~vG~~GsGKTTtaakLA~~-l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv 157 (433)
T PRK10867 79 NDELVEILGGENSELNLAAKPPTVIMMVGLQGAGKTTTAGKLAKY-LKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGV 157 (433)
T ss_pred HHHHHHHhCCCcceeeecCCCCEEEEEECCCCCcHHHHHHHHHHH-HHHhcCCcEEEEEccccchHHHHHHHHHHhhcCC
Confidence 44566666432110 0134689999999999999998887765 33332 23445554321 1222334445555543
No 465
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=89.38 E-value=0.43 Score=51.14 Aligned_cols=36 Identities=25% Similarity=0.279 Sum_probs=27.4
Q ss_pred EEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeC
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVS 144 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~ 144 (1217)
++|+|+|.+|+|||||+.++.... +... .+.-|...
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L-~~~G-~V~~IKhd 37 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRL-SGRG-RVGTVKHM 37 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH-HhCC-CEEEEEEc
Confidence 589999999999999999998873 3333 35555543
No 466
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=89.36 E-value=0.42 Score=56.99 Aligned_cols=45 Identities=22% Similarity=0.321 Sum_probs=35.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 79 PAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.+++|.+..+..+...+... ...-|.|+|.+|+|||++|+.+++.
T Consensus 65 ~~iiGqs~~i~~l~~al~~~------~~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGP------NPQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHH
Confidence 36999999998888776443 2245679999999999999998763
No 467
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=89.36 E-value=0.42 Score=48.88 Aligned_cols=33 Identities=15% Similarity=0.249 Sum_probs=24.4
Q ss_pred EEEEEccCCchHHHHHHHHHhccccCCCCCeEEE
Q 039990 108 VIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWV 141 (1217)
Q Consensus 108 vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv 141 (1217)
+|.|+|..|.||||++..+... ........++.
T Consensus 3 lilI~GptGSGKTTll~~ll~~-~~~~~~~~i~t 35 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDY-INKNKTHHILT 35 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHH-hhhcCCcEEEE
Confidence 7899999999999999987765 33333444443
No 468
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=89.33 E-value=1.2 Score=49.99 Aligned_cols=80 Identities=21% Similarity=0.200 Sum_probs=53.1
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhccc-cC-------------------CCCCeE
Q 039990 80 AVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKL-TD-------------------DFKPKA 139 (1217)
Q Consensus 80 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~-~~-------------------~F~~~~ 139 (1217)
.++|-+....++..+..... .....+.++|++|+||||+|.++++... .. ..+.+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~----~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~l 77 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG----RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFL 77 (325)
T ss_pred CcccchhHHHHHHHHHHhcC----CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceE
Confidence 46777888888888887543 2234689999999999999999887631 11 224555
Q ss_pred EEEeCCccc---HHHHHHHHHHHhhcC
Q 039990 140 WVCVSDDFD---ILRISKAILESITRS 163 (1217)
Q Consensus 140 wv~~~~~~~---~~~~~~~i~~~l~~~ 163 (1217)
.+..+.... ..+..+++.+.....
T Consensus 78 el~~s~~~~~~i~~~~vr~~~~~~~~~ 104 (325)
T COG0470 78 ELNPSDLRKIDIIVEQVRELAEFLSES 104 (325)
T ss_pred EecccccCCCcchHHHHHHHHHHhccC
Confidence 666555544 455566666655443
No 469
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=89.31 E-value=4.5 Score=48.22 Aligned_cols=174 Identities=14% Similarity=0.108 Sum_probs=86.9
Q ss_pred ccccchhhHHHHHHHHhcCCCCC---CCCcEEEEEEccCCchHHHHHHHHHhccccCCC--CCeEEEEeCCcccHHHHHH
Q 039990 80 AVYGRNEDKARILDMVLKNDPSD---AANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDF--KPKAWVCVSDDFDILRISK 154 (1217)
Q Consensus 80 ~~vGr~~~~~~l~~~L~~~~~~~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F--~~~~wv~~~~~~~~~~~~~ 154 (1217)
...+++..+-.+...+......+ ..-..+|.++|.+|+||||++++|+.+.-.+-| ++.-.++.+...+-.++..
T Consensus 402 ~~~~~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~ 481 (953)
T KOG0736|consen 402 SPPGLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQA 481 (953)
T ss_pred CCccchHHHHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHH
Confidence 44567777777777776543221 023468889999999999999999986322222 3333343333333222222
Q ss_pred HHHHHhhcCCC---------------CCCChhHHHHHHHHHHHhcCcCHHHHHHhhcccCCCCCCcEEEEEcC-chHHHH
Q 039990 155 AILESITRSSC---------------GLTDLNSVQLKLKEAVFKKNKSYELWQALKSPFMAGAPGSRIIVTTR-SMDVAL 218 (1217)
Q Consensus 155 ~i~~~l~~~~~---------------~~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~~gs~ilvTtR-~~~v~~ 218 (1217)
+......-.. +....-.+...++..+. .+.+....++.-++.||- .+++..
T Consensus 482 -~f~~a~~~~pavifl~~~dvl~id~dgged~rl~~~i~~~ls------------~e~~~~~~~~~ivv~t~~s~~~lp~ 548 (953)
T KOG0736|consen 482 -IFSRARRCSPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLS------------NEDFKFSCPPVIVVATTSSIEDLPA 548 (953)
T ss_pred -HHHHHhhcCceEEEEeccceeeecCCCchhHHHHHHHHHHHh------------cccccCCCCceEEEEeccccccCCH
Confidence 2222111100 00011111112221111 122232334444444443 333332
Q ss_pred hhC--CCceEeccCCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhccCCc
Q 039990 219 KMG--SGKNYELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGLP 271 (1217)
Q Consensus 219 ~~~--~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 271 (1217)
... .-+.++++.+++++-.++|+.+.-.. .-.-...-+.+++++.|.-
T Consensus 549 ~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~-----~~n~~v~~k~~a~~t~gfs 598 (953)
T KOG0736|consen 549 DIQSLFLHEIEVPALSEEQRLEILQWYLNHL-----PLNQDVNLKQLARKTSGFS 598 (953)
T ss_pred HHHHhhhhhccCCCCCHHHHHHHHHHHHhcc-----ccchHHHHHHHHHhcCCCC
Confidence 222 23688999999999999999987221 1111223456666666654
No 470
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=89.26 E-value=0.49 Score=52.34 Aligned_cols=44 Identities=25% Similarity=0.354 Sum_probs=34.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHh
Q 039990 79 PAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYN 128 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 128 (1217)
+.+||.++.+..++-.+.... ..-|.|.|..|+|||||++.+..
T Consensus 4 ~~ivgq~~~~~al~~~~~~~~------~g~vli~G~~G~gKttl~r~~~~ 47 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVIDPK------IGGVMVMGDRGTGKSTAVRALAA 47 (337)
T ss_pred cccccHHHHHHHHHHHhcCCC------CCeEEEEcCCCCCHHHHHHHHHH
Confidence 468999988888766666532 23467999999999999999864
No 471
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=89.26 E-value=0.39 Score=53.00 Aligned_cols=46 Identities=20% Similarity=0.239 Sum_probs=34.1
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 78 EPAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 78 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
-+.++|.++.+..+.-.+.... ..-|.+.|.+|.||||+|+.+..-
T Consensus 7 f~~i~Gq~~~~~~l~~~~~~~~------~~~vLl~G~pG~gKT~lar~la~l 52 (334)
T PRK13407 7 FSAIVGQEEMKQAMVLTAIDPG------IGGVLVFGDRGTGKSTAVRALAAL 52 (334)
T ss_pred HHHhCCHHHHHHHHHHHHhccC------CCcEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999988887765444322 124789999999999999998653
No 472
>PRK06835 DNA replication protein DnaC; Validated
Probab=89.26 E-value=0.25 Score=54.53 Aligned_cols=36 Identities=19% Similarity=0.226 Sum_probs=27.4
Q ss_pred EEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEe
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCV 143 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~ 143 (1217)
.-+.++|.+|+|||.||.++++......+ .++++++
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~-~V~y~t~ 219 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGK-SVIYRTA 219 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCC-eEEEEEH
Confidence 56889999999999999999987433333 4566654
No 473
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=89.25 E-value=0.27 Score=55.98 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=22.4
Q ss_pred CcEEEEEEccCCchHHHHHHHHHhc
Q 039990 105 NFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 105 ~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
-++.|+|+|..|.||||||+++++.
T Consensus 218 ~~~~IvI~G~~gsGKTTL~~~La~~ 242 (399)
T PRK08099 218 FVRTVAILGGESSGKSTLVNKLANI 242 (399)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3579999999999999999998875
No 474
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=89.24 E-value=0.44 Score=48.79 Aligned_cols=23 Identities=30% Similarity=0.674 Sum_probs=19.5
Q ss_pred EEEEccCCchHHHHHHHHHhccc
Q 039990 109 IPLVGMGGIGKTTLAQEVYNDKL 131 (1217)
Q Consensus 109 v~I~G~gGiGKTtLA~~v~~~~~ 131 (1217)
|.++|.+|+|||+|+.++.....
T Consensus 3 vvvlG~~gVGKTSli~r~~~~~f 25 (202)
T cd04120 3 VIIIGSRGVGKTSLMRRFTDDTF 25 (202)
T ss_pred EEEECcCCCCHHHHHHHHHhCCC
Confidence 67899999999999999876543
No 475
>PLN02165 adenylate isopentenyltransferase
Probab=89.22 E-value=0.27 Score=53.42 Aligned_cols=23 Identities=26% Similarity=0.560 Sum_probs=21.3
Q ss_pred EEEEEEccCCchHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
++|+|+|+.|+|||+||..++..
T Consensus 44 ~iivIiGPTGSGKStLA~~LA~~ 66 (334)
T PLN02165 44 KVVVIMGATGSGKSRLSVDLATR 66 (334)
T ss_pred CEEEEECCCCCcHHHHHHHHHHH
Confidence 58999999999999999998876
No 476
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=89.22 E-value=3.1 Score=48.43 Aligned_cols=64 Identities=27% Similarity=0.511 Sum_probs=39.8
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHH-HHHHHHhccccCCCCCeEEEEeCCc--ccHHHHHHHHHHHhhcC
Q 039990 88 KARILDMVLKNDPSDAANFRVIPLVGMGGIGKTT-LAQEVYNDKLTDDFKPKAWVCVSDD--FDILRISKAILESITRS 163 (1217)
Q Consensus 88 ~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTt-LA~~v~~~~~~~~F~~~~wv~~~~~--~~~~~~~~~i~~~l~~~ 163 (1217)
.++|++.+.+. +||.|+|-.|.|||| ||+.+|.+ .|...--|-+.|+ .....+.+.++++++..
T Consensus 361 R~~ll~~ir~n--------~vvvivgETGSGKTTQl~QyL~ed----GY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~ 427 (1042)
T KOG0924|consen 361 RDQLLSVIREN--------QVVVIVGETGSGKTTQLAQYLYED----GYADNGMIGCTQPRRVAAISVAKRVAEEMGVT 427 (1042)
T ss_pred HHHHHHHHhhC--------cEEEEEecCCCCchhhhHHHHHhc----ccccCCeeeecCchHHHHHHHHHHHHHHhCCc
Confidence 34555555443 699999999999985 66666654 3421112333333 34566777888888553
No 477
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=89.19 E-value=0.35 Score=47.87 Aligned_cols=22 Identities=27% Similarity=0.614 Sum_probs=19.3
Q ss_pred EEEEEccCCchHHHHHHHHHhc
Q 039990 108 VIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 108 vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.|+|+|.+|+|||||+.++.+.
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~ 23 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQG 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4778999999999999998764
No 478
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=89.19 E-value=0.26 Score=49.48 Aligned_cols=21 Identities=38% Similarity=0.480 Sum_probs=19.0
Q ss_pred EEEEEccCCchHHHHHHHHHh
Q 039990 108 VIPLVGMGGIGKTTLAQEVYN 128 (1217)
Q Consensus 108 vv~I~G~gGiGKTtLA~~v~~ 128 (1217)
+|+|+|..|+||||+|+.+.+
T Consensus 1 ii~itG~~gsGKst~~~~l~~ 21 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999765
No 479
>PLN02924 thymidylate kinase
Probab=89.17 E-value=0.85 Score=47.28 Aligned_cols=33 Identities=18% Similarity=0.101 Sum_probs=25.9
Q ss_pred cEEEEEEccCCchHHHHHHHHHhccccCCCCCe
Q 039990 106 FRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPK 138 (1217)
Q Consensus 106 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~ 138 (1217)
-..|+|-|..|+||||+|+.+++......+...
T Consensus 16 g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v~ 48 (220)
T PLN02924 16 GALIVLEGLDRSGKSTQCAKLVSFLKGLGVAAE 48 (220)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCCce
Confidence 478999999999999999999887433345443
No 480
>PTZ00494 tuzin-like protein; Provisional
Probab=89.15 E-value=1.3 Score=49.05 Aligned_cols=81 Identities=15% Similarity=0.218 Sum_probs=60.9
Q ss_pred CCCCCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCcccHHHHHH
Q 039990 75 LTSEPAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDFDILRISK 154 (1217)
Q Consensus 75 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 154 (1217)
......+|.|++|-..+...|...+. ..++++++.|.-|.||++|.+.....+ + -..++|++.... +-++
T Consensus 367 ~a~~~~~V~R~~eE~~vRqvL~qld~---aHPRIvV~TG~~GcGKSslcRsAvrkE---~-~paV~VDVRg~E---DtLr 436 (664)
T PTZ00494 367 AAAEAFEVRREDEEALVRSVLTQMAP---SHPRIVALAGGSGGGRCVPCRRAVRVE---G-VALVHVDVGGTE---DTLR 436 (664)
T ss_pred ccccccccchhhHHHHHHHHHhhccC---CCCcEEEEecCCCCCchHHHHHHHHHc---C-CCeEEEEecCCc---chHH
Confidence 44567899999998888888877665 557999999999999999999877652 1 235677776553 3467
Q ss_pred HHHHHhhcCCC
Q 039990 155 AILESITRSSC 165 (1217)
Q Consensus 155 ~i~~~l~~~~~ 165 (1217)
.|.+.++.+..
T Consensus 437 sVVKALgV~nv 447 (664)
T PTZ00494 437 SVVRALGVSNV 447 (664)
T ss_pred HHHHHhCCCCh
Confidence 77788876644
No 481
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=89.13 E-value=0.51 Score=47.78 Aligned_cols=37 Identities=27% Similarity=0.257 Sum_probs=27.2
Q ss_pred hhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 86 EDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 86 ~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.+..++++...... ..++|+|..|.||||+++.+...
T Consensus 12 ~~~~~~l~~~v~~g-------~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 12 PLQAAYLWLAVEAR-------KNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred HHHHHHHHHHHhCC-------CEEEEECCCCCCHHHHHHHHHhh
Confidence 34555555554432 58999999999999999998764
No 482
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=89.13 E-value=4.9 Score=43.74 Aligned_cols=56 Identities=25% Similarity=0.283 Sum_probs=37.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCC--------CCCcEEEEEEccCCchHHHHHHHHHhccccCCC
Q 039990 79 PAVYGRNEDKARILDMVLKNDPSD--------AANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDF 135 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~~--------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F 135 (1217)
.++-|-+..++.+.+...-+-... -...+-|.++|++|.|||-||++++.+ ....|
T Consensus 92 ~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Ake-aga~f 155 (386)
T KOG0737|consen 92 DDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKE-AGANF 155 (386)
T ss_pred hhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHH-cCCCc
Confidence 456666777777766553221100 023467889999999999999999987 45555
No 483
>PRK06851 hypothetical protein; Provisional
Probab=89.10 E-value=0.34 Score=53.79 Aligned_cols=40 Identities=23% Similarity=0.334 Sum_probs=32.8
Q ss_pred EEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDD 146 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~ 146 (1217)
+++.|.|.+|+|||||+++++....+..++..++-|.+.+
T Consensus 215 ~~~~i~G~pG~GKstl~~~i~~~a~~~G~~v~~~hC~~dP 254 (367)
T PRK06851 215 NRYFLKGRPGTGKSTMLKKIAKAAEERGFDVEVYHCGFDP 254 (367)
T ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 7899999999999999999998656677877777665444
No 484
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=89.09 E-value=0.49 Score=53.21 Aligned_cols=51 Identities=27% Similarity=0.333 Sum_probs=36.5
Q ss_pred Cccccchh---hHHHHHHHHhcCCCC---CCCCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 79 PAVYGRNE---DKARILDMVLKNDPS---DAANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 79 ~~~vGr~~---~~~~l~~~L~~~~~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.++-|-|+ |+++|++.|.....= ++.=++=|.++|++|.|||-||++|+-.
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGE 360 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGE 360 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcc
Confidence 45667664 667777777654210 1134577889999999999999998875
No 485
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=89.07 E-value=0.33 Score=52.86 Aligned_cols=39 Identities=26% Similarity=0.279 Sum_probs=26.4
Q ss_pred EEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDD 146 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~ 146 (1217)
++|+|.|-|||||||+|..+.....+..+ .+.-|+....
T Consensus 2 ~~iav~~KGGVGKTT~~~nLA~~La~~G~-rVLlID~Dpq 40 (274)
T PRK13235 2 RKVAIYGKGGIGKSTTTQNTVAGLAEMGK-KVMVVGCDPK 40 (274)
T ss_pred CEEEEeCCCCccHHHHHHHHHHHHHHCCC-cEEEEecCCc
Confidence 58889999999999999887765323333 2444554443
No 486
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=89.06 E-value=0.33 Score=44.69 Aligned_cols=21 Identities=24% Similarity=0.550 Sum_probs=19.6
Q ss_pred EEEEccCCchHHHHHHHHHhc
Q 039990 109 IPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 109 v~I~G~gGiGKTtLA~~v~~~ 129 (1217)
|+|.|++|+|||||...+...
T Consensus 2 V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 789999999999999999974
No 487
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=89.04 E-value=0.54 Score=49.74 Aligned_cols=41 Identities=22% Similarity=0.201 Sum_probs=30.5
Q ss_pred CcEEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCc
Q 039990 105 NFRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDD 146 (1217)
Q Consensus 105 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~ 146 (1217)
.-.++.|+|.+|+|||++|.++.....+ .=..++|++..+.
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~-~g~~~~y~~~e~~ 64 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALK-QGKKVYVITTENT 64 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHh-CCCEEEEEEcCCC
Confidence 3479999999999999999998654233 2246788887544
No 488
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=89.02 E-value=0.38 Score=47.75 Aligned_cols=22 Identities=18% Similarity=0.475 Sum_probs=19.6
Q ss_pred EEEEccCCchHHHHHHHHHhcc
Q 039990 109 IPLVGMGGIGKTTLAQEVYNDK 130 (1217)
Q Consensus 109 v~I~G~gGiGKTtLA~~v~~~~ 130 (1217)
|+++|.+|+|||||+.++....
T Consensus 3 i~~vG~~~vGKTsli~~l~~~~ 24 (168)
T cd04119 3 VISMGNSGVGKSCIIKRYCEGR 24 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 6799999999999999988764
No 489
>PRK14528 adenylate kinase; Provisional
Probab=89.00 E-value=0.31 Score=49.23 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=20.3
Q ss_pred EEEEEEccCCchHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
+.|.|.|++|+||||+|+.+...
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~ 24 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCER 24 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999998765
No 490
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=88.95 E-value=0.77 Score=50.92 Aligned_cols=54 Identities=19% Similarity=0.163 Sum_probs=38.5
Q ss_pred cEEEEEEccCCchHHHHHHHHHhcc-cc---CCC-CCeEEEEeCCcccHHHHHHHHHHHh
Q 039990 106 FRVIPLVGMGGIGKTTLAQEVYNDK-LT---DDF-KPKAWVCVSDDFDILRISKAILESI 160 (1217)
Q Consensus 106 ~~vv~I~G~gGiGKTtLA~~v~~~~-~~---~~F-~~~~wv~~~~~~~~~~~~~~i~~~l 160 (1217)
-.++-|+|.+|+|||++|..++... .. ..- ..++||+....|+..++. +|++.+
T Consensus 123 g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~ 181 (342)
T PLN03186 123 GSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERF 181 (342)
T ss_pred ceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHc
Confidence 4788899999999999998877432 11 111 268999999988877654 445544
No 491
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=88.95 E-value=0.7 Score=47.27 Aligned_cols=24 Identities=33% Similarity=0.340 Sum_probs=21.7
Q ss_pred EEEEEEccCCchHHHHHHHHHhcc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDK 130 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~ 130 (1217)
..|+|.|..|+||||+|+.+.+..
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l 27 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLL 27 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999998763
No 492
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=88.93 E-value=0.37 Score=52.69 Aligned_cols=41 Identities=20% Similarity=0.222 Sum_probs=28.4
Q ss_pred EEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCccc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDFD 148 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~~~ 148 (1217)
++|+|+|-||+||||+|..++....+..+ .+.-|+.....+
T Consensus 1 ~vIav~gKGGvGKTT~a~nLA~~La~~g~-rVLlID~Dpq~~ 41 (296)
T TIGR02016 1 RIIAIYGKGGSGKSFTTTNLSHMMAEMGK-RVLQLGCDPKHD 41 (296)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCC-eEEEEEecCCCC
Confidence 47888999999999999988875322223 355666554443
No 493
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=88.93 E-value=0.31 Score=46.95 Aligned_cols=24 Identities=29% Similarity=0.571 Sum_probs=22.0
Q ss_pred cEEEEEEccCCchHHHHHHHHHhc
Q 039990 106 FRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 106 ~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.++++|+|..|+|||||..++...
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~ 25 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRK 25 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHH
Confidence 379999999999999999999876
No 494
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=88.90 E-value=0.47 Score=52.33 Aligned_cols=25 Identities=36% Similarity=0.563 Sum_probs=22.1
Q ss_pred CcEEEEEEccCCchHHHHHHHHHhc
Q 039990 105 NFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 105 ~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
....|+|+|+.|.||||+|+.++..
T Consensus 132 ~~~~I~l~G~~GsGKStvg~~La~~ 156 (309)
T PRK08154 132 RRRRIALIGLRGAGKSTLGRMLAAR 156 (309)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999998875
No 495
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=88.89 E-value=0.6 Score=45.72 Aligned_cols=44 Identities=9% Similarity=0.202 Sum_probs=28.9
Q ss_pred cchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 83 GRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 83 Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
|.++-++.+.+.+..... .....|+++|++|+|||||...+..+
T Consensus 82 ~~~~L~~~l~~~~~~~~~---~~~~~v~~~G~~nvGKStliN~l~~~ 125 (157)
T cd01858 82 GKGSLIQLLRQFSKLHSD---KKQISVGFIGYPNVGKSSIINTLRSK 125 (157)
T ss_pred cHHHHHHHHHHHHhhhcc---ccceEEEEEeCCCCChHHHHHHHhcC
Confidence 445555555554422111 12356889999999999999998875
No 496
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=88.87 E-value=2.6 Score=49.72 Aligned_cols=53 Identities=30% Similarity=0.332 Sum_probs=37.4
Q ss_pred CCCccccchhhHHHHHHHH---hcCCC---CCCCCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 77 SEPAVYGRNEDKARILDMV---LKNDP---SDAANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 77 ~~~~~vGr~~~~~~l~~~L---~~~~~---~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.-.++.|.|+.++++.+.+ ..... -+..-++=|..+|++|.|||.||++++..
T Consensus 148 ~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgE 206 (596)
T COG0465 148 TFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGE 206 (596)
T ss_pred ChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcc
Confidence 3457889887766665544 43220 01144677899999999999999999986
No 497
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=88.87 E-value=0.39 Score=47.31 Aligned_cols=23 Identities=30% Similarity=0.690 Sum_probs=19.6
Q ss_pred EEEEEccCCchHHHHHHHHHhcc
Q 039990 108 VIPLVGMGGIGKTTLAQEVYNDK 130 (1217)
Q Consensus 108 vv~I~G~gGiGKTtLA~~v~~~~ 130 (1217)
.|+|+|.+|+|||||+.++.+..
T Consensus 3 ki~iiG~~~vGKTsl~~~~~~~~ 25 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLIQNH 25 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 36789999999999999987653
No 498
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=88.86 E-value=0.58 Score=52.65 Aligned_cols=38 Identities=32% Similarity=0.322 Sum_probs=29.1
Q ss_pred EEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCC
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSD 145 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~ 145 (1217)
.++.|.|.+|+|||||+.+++.. ....-..++||+...
T Consensus 83 slvLI~G~pG~GKStLllq~a~~-~a~~g~~VlYvs~EE 120 (372)
T cd01121 83 SVILIGGDPGIGKSTLLLQVAAR-LAKRGGKVLYVSGEE 120 (372)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH-HHhcCCeEEEEECCc
Confidence 69999999999999999998876 333334677887543
No 499
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=88.84 E-value=0.59 Score=46.60 Aligned_cols=34 Identities=26% Similarity=0.317 Sum_probs=25.8
Q ss_pred EEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEE
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVC 142 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~ 142 (1217)
.||+|+|++|.|||||.+-+-. ....=.+.+||.
T Consensus 29 evv~iiGpSGSGKSTlLRclN~--LE~~~~G~I~i~ 62 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCLNG--LEEPDSGSITVD 62 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHHC--CcCCCCceEEEC
Confidence 4999999999999999998543 223334677875
No 500
>PRK06921 hypothetical protein; Provisional
Probab=88.83 E-value=0.4 Score=51.37 Aligned_cols=37 Identities=27% Similarity=0.343 Sum_probs=27.9
Q ss_pred EEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEe
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCV 143 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~ 143 (1217)
..+.++|..|+|||.||.++++...+..-..++|++.
T Consensus 118 ~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~ 154 (266)
T PRK06921 118 NSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPF 154 (266)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEH
Confidence 5788999999999999999998743331344667764
Done!