Query 039990
Match_columns 1217
No_of_seqs 612 out of 4966
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 05:54:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039990.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039990hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 7E-44 2.4E-48 448.7 31.3 652 474-1208 69-766 (768)
2 2a5y_B CED-4; apoptosis; HET: 100.0 3.1E-41 1.1E-45 404.3 22.5 310 79-408 128-473 (549)
3 3rgz_A Protein brassinosteroid 100.0 6.5E-40 2.2E-44 412.6 28.0 607 482-1185 50-716 (768)
4 1ziw_A TOLL-like receptor 3; i 100.0 3.4E-34 1.2E-38 358.4 37.5 223 933-1161 382-620 (680)
5 1ziw_A TOLL-like receptor 3; i 100.0 2.9E-33 9.8E-38 350.0 39.4 272 908-1186 329-622 (680)
6 3t6q_A CD180 antigen; protein- 100.0 1.8E-32 6.1E-37 338.1 37.5 245 933-1184 302-558 (606)
7 1vt4_I APAF-1 related killer D 100.0 4.2E-34 1.4E-38 340.8 20.2 275 81-399 130-436 (1221)
8 3vq2_A TLR4, TOLL-like recepto 100.0 3.4E-32 1.2E-36 335.6 34.6 80 482-572 32-113 (606)
9 3t6q_A CD180 antigen; protein- 100.0 4.3E-32 1.5E-36 334.6 33.2 203 933-1163 351-560 (606)
10 3vq2_A TLR4, TOLL-like recepto 100.0 2.7E-32 9.2E-37 336.5 30.8 181 450-655 32-215 (606)
11 3sfz_A APAF-1, apoptotic pepti 100.0 3.9E-32 1.3E-36 366.0 26.2 302 76-407 121-453 (1249)
12 3j0a_A TOLL-like receptor 5; m 100.0 5.1E-30 1.7E-34 326.1 43.4 241 930-1186 312-560 (844)
13 3j0a_A TOLL-like receptor 5; m 100.0 1.4E-28 4.9E-33 312.8 40.1 512 481-1165 23-562 (844)
14 1z6t_A APAF-1, apoptotic prote 100.0 5.6E-30 1.9E-34 313.3 24.6 300 77-404 122-450 (591)
15 2z63_A TOLL-like receptor 4, v 100.0 1E-28 3.6E-33 302.5 27.6 206 933-1167 326-535 (570)
16 2z81_A CD282 antigen, TOLL-lik 100.0 6.3E-28 2.2E-32 293.7 31.8 172 931-1111 333-510 (549)
17 2z7x_B TOLL-like receptor 1, v 100.0 3.9E-28 1.3E-32 293.0 24.0 130 1047-1184 345-479 (520)
18 4eco_A Uncharacterized protein 100.0 4.4E-28 1.5E-32 297.4 24.2 367 506-1040 197-600 (636)
19 2z81_A CD282 antigen, TOLL-lik 100.0 4.3E-28 1.5E-32 295.2 22.7 179 450-655 26-207 (549)
20 2z63_A TOLL-like receptor 4, v 100.0 2.1E-27 7.3E-32 290.8 28.0 482 451-1042 29-533 (570)
21 4ecn_A Leucine-rich repeat pro 100.0 1.8E-27 6.2E-32 295.0 26.5 364 507-1041 440-841 (876)
22 4g8a_A TOLL-like receptor 4; l 99.9 2.7E-26 9.2E-31 285.7 32.9 204 954-1184 369-578 (635)
23 2z7x_B TOLL-like receptor 1, v 99.9 1.9E-26 6.6E-31 278.2 26.4 429 482-1085 21-480 (520)
24 4eco_A Uncharacterized protein 99.9 2.3E-26 7.9E-31 282.1 22.5 175 474-684 198-393 (636)
25 4ecn_A Leucine-rich repeat pro 99.9 2.2E-25 7.5E-30 276.4 27.0 160 980-1166 673-842 (876)
26 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 3.8E-25 1.3E-29 268.9 26.0 217 933-1184 277-508 (562)
27 4g8a_A TOLL-like receptor 4; l 99.9 5E-25 1.7E-29 274.2 25.5 180 451-654 53-234 (635)
28 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.6E-24 5.5E-29 263.3 27.3 128 932-1060 353-483 (562)
29 1jl5_A Outer protein YOPM; leu 99.9 1.3E-24 4.5E-29 253.9 25.3 212 932-1184 215-427 (454)
30 1jl5_A Outer protein YOPM; leu 99.9 5.8E-24 2E-28 248.5 23.6 404 481-1063 10-429 (454)
31 3bz5_A Internalin-J, INLJ; leu 99.9 3.5E-22 1.2E-26 233.6 25.4 79 478-573 38-116 (457)
32 3v47_A TOLL-like receptor 5B a 99.9 9E-22 3.1E-26 233.1 26.3 305 832-1184 69-406 (455)
33 3v47_A TOLL-like receptor 5B a 99.9 6.5E-22 2.2E-26 234.4 24.7 84 482-575 30-115 (455)
34 3bz5_A Internalin-J, INLJ; leu 99.9 1.8E-21 6.3E-26 227.5 26.0 61 508-573 35-95 (457)
35 1o6v_A Internalin A; bacterial 99.9 3.2E-21 1.1E-25 228.1 28.2 77 933-1015 310-386 (466)
36 1o6v_A Internalin A; bacterial 99.9 4.7E-21 1.6E-25 226.7 25.5 347 748-1168 45-392 (466)
37 4fmz_A Internalin; leucine ric 99.9 1.4E-20 4.9E-25 213.8 23.4 126 1048-1184 219-344 (347)
38 2id5_A Lingo-1, leucine rich r 99.9 4.3E-20 1.5E-24 219.8 26.2 246 932-1184 80-331 (477)
39 4fmz_A Internalin; leucine ric 99.8 2.1E-20 7E-25 212.5 21.0 303 814-1160 41-343 (347)
40 3o6n_A APL1; leucine-rich repe 99.8 4E-20 1.4E-24 213.5 22.4 301 819-1185 47-351 (390)
41 3oja_B Anopheles plasmodium-re 99.8 1.2E-19 4E-24 221.5 22.7 294 828-1185 61-357 (597)
42 2id5_A Lingo-1, leucine rich r 99.8 3.7E-19 1.3E-23 211.7 26.6 200 930-1134 126-329 (477)
43 3o6n_A APL1; leucine-rich repe 99.8 6.2E-19 2.1E-23 203.5 22.9 282 907-1215 68-352 (390)
44 3oja_B Anopheles plasmodium-re 99.8 1.3E-18 4.3E-23 212.3 22.8 282 907-1215 74-358 (597)
45 4fcg_A Uncharacterized protein 99.8 6E-19 2.1E-23 197.0 17.9 227 932-1181 81-309 (328)
46 2ft3_A Biglycan; proteoglycan, 99.8 1.2E-17 4E-22 188.0 23.5 284 909-1212 34-330 (332)
47 1xku_A Decorin; proteoglycan, 99.8 1.1E-17 3.7E-22 188.2 23.2 285 909-1212 32-329 (330)
48 2ft3_A Biglycan; proteoglycan, 99.8 1.8E-17 6.2E-22 186.4 24.2 242 930-1184 76-331 (332)
49 1ogq_A PGIP-2, polygalacturona 99.8 8.7E-19 3E-23 194.6 10.9 247 933-1187 51-305 (313)
50 1xku_A Decorin; proteoglycan, 99.7 1E-16 3.4E-21 180.2 23.3 240 932-1183 76-329 (330)
51 4fcg_A Uncharacterized protein 99.7 2.2E-17 7.5E-22 184.3 17.3 227 908-1167 81-317 (328)
52 3zyi_A Leucine-rich repeat-con 99.7 8.1E-17 2.8E-21 189.5 22.3 225 929-1161 72-301 (452)
53 1ogq_A PGIP-2, polygalacturona 99.7 7.2E-18 2.5E-22 187.2 12.1 250 909-1167 51-308 (313)
54 3zyj_A Leucine-rich repeat-con 99.7 1.3E-16 4.5E-21 186.9 21.9 225 929-1161 61-290 (440)
55 3g06_A SSPH2 (leucine-rich rep 99.7 5.2E-16 1.8E-20 186.3 25.9 234 908-1184 61-295 (622)
56 3zyj_A Leucine-rich repeat-con 99.7 3.3E-16 1.1E-20 183.5 23.3 239 934-1184 45-290 (440)
57 3ogk_B Coronatine-insensitive 99.7 9.2E-19 3.2E-23 215.0 0.7 142 445-596 68-227 (592)
58 3zyi_A Leucine-rich repeat-con 99.7 3.8E-16 1.3E-20 183.8 22.9 220 908-1135 75-300 (452)
59 2z80_A TOLL-like receptor 2, v 99.7 1.8E-16 6.1E-21 180.0 17.1 256 920-1184 42-312 (353)
60 3ogk_B Coronatine-insensitive 99.7 3.2E-18 1.1E-22 210.2 1.9 85 1048-1136 434-524 (592)
61 3g06_A SSPH2 (leucine-rich rep 99.7 1.3E-15 4.5E-20 182.8 23.6 256 483-854 41-296 (622)
62 2z66_A Variable lymphocyte rec 99.7 5.3E-16 1.8E-20 172.3 18.5 237 920-1184 18-259 (306)
63 2z80_A TOLL-like receptor 2, v 99.7 4.2E-16 1.4E-20 176.9 15.5 226 932-1164 76-315 (353)
64 2xwt_C Thyrotropin receptor; s 99.7 6.9E-16 2.4E-20 164.2 16.2 213 918-1186 20-239 (239)
65 3o53_A Protein LRIM1, AGAP0063 99.7 2E-16 6.7E-21 176.2 11.9 240 930-1187 32-276 (317)
66 1ozn_A Reticulon 4 receptor; N 99.6 5.5E-15 1.9E-19 162.1 20.4 206 930-1163 30-238 (285)
67 1ozn_A Reticulon 4 receptor; N 99.6 4.6E-15 1.6E-19 162.7 19.2 106 1072-1183 128-235 (285)
68 2xwt_C Thyrotropin receptor; s 99.6 2.2E-15 7.5E-20 160.3 16.1 176 907-1107 30-214 (239)
69 1wwl_A Monocyte differentiatio 99.6 2.6E-16 8.9E-21 174.8 9.0 240 933-1184 44-307 (312)
70 3o53_A Protein LRIM1, AGAP0063 99.6 8.3E-17 2.8E-21 179.3 5.0 239 907-1166 33-278 (317)
71 3oja_A Leucine-rich immune mol 99.6 1.1E-15 3.7E-20 180.4 13.8 234 930-1181 32-270 (487)
72 2p1m_B Transport inhibitor res 99.6 1.1E-17 3.8E-22 205.6 -4.1 387 747-1161 64-517 (594)
73 2p1m_B Transport inhibitor res 99.6 9.9E-18 3.4E-22 206.0 -7.1 392 767-1185 63-518 (594)
74 1z7x_W Ribonuclease inhibitor; 99.6 2.3E-17 8E-22 195.6 -4.0 338 815-1183 26-437 (461)
75 2z66_A Variable lymphocyte rec 99.6 1.4E-14 4.8E-19 160.8 18.2 173 932-1108 52-233 (306)
76 4ay9_X Follicle-stimulating ho 99.6 4.8E-14 1.6E-18 159.3 20.0 228 919-1159 19-255 (350)
77 1p9a_G Platelet glycoprotein I 99.6 4.6E-14 1.6E-18 154.2 19.2 198 953-1161 7-206 (290)
78 2z62_A TOLL-like receptor 4, v 99.6 5.3E-14 1.8E-18 153.3 18.1 204 930-1161 26-235 (276)
79 1z7x_W Ribonuclease inhibitor; 99.6 4.5E-17 1.5E-21 193.2 -7.7 344 818-1184 4-409 (461)
80 3oja_A Leucine-rich immune mol 99.5 2E-14 6.7E-19 169.6 12.7 234 817-1106 34-270 (487)
81 4ay9_X Follicle-stimulating ho 99.5 2.2E-13 7.6E-18 153.8 20.3 194 932-1134 54-255 (350)
82 2o6q_A Variable lymphocyte rec 99.5 2.8E-13 9.5E-18 146.9 20.2 174 980-1161 37-216 (270)
83 4glp_A Monocyte differentiatio 99.5 6.6E-14 2.2E-18 155.3 14.9 133 1047-1184 166-305 (310)
84 1wwl_A Monocyte differentiatio 99.5 1.7E-14 5.9E-19 160.1 9.1 196 954-1161 93-307 (312)
85 2o6q_A Variable lymphocyte rec 99.5 5.9E-13 2E-17 144.3 20.4 195 910-1136 18-216 (270)
86 2z62_A TOLL-like receptor 4, v 99.5 4.3E-13 1.5E-17 146.2 19.4 197 956-1183 28-234 (276)
87 4glp_A Monocyte differentiatio 99.5 2.4E-13 8.2E-18 150.8 13.8 198 933-1161 92-305 (310)
88 1h6u_A Internalin H; cell adhe 99.5 3E-13 1E-17 149.4 14.2 192 933-1167 42-233 (308)
89 1p9a_G Platelet glycoprotein I 99.5 1.6E-12 5.5E-17 141.9 19.4 195 907-1135 9-205 (290)
90 1h6u_A Internalin H; cell adhe 99.4 3.3E-13 1.1E-17 149.1 13.4 191 953-1184 38-228 (308)
91 2ast_B S-phase kinase-associat 99.4 2.4E-14 8.2E-19 161.5 3.3 200 954-1160 91-303 (336)
92 2qen_A Walker-type ATPase; unk 99.4 1.3E-11 4.4E-16 140.0 25.0 281 77-400 10-349 (350)
93 2ast_B S-phase kinase-associat 99.4 1.8E-14 6E-19 162.6 1.2 244 932-1189 47-308 (336)
94 3rfs_A Internalin B, repeat mo 99.4 5E-12 1.7E-16 137.0 15.6 191 978-1183 39-232 (272)
95 3m19_A Variable lymphocyte rec 99.4 1.1E-11 3.7E-16 132.6 17.5 171 980-1160 14-189 (251)
96 3m19_A Variable lymphocyte rec 99.3 1.4E-11 4.8E-16 131.7 17.4 177 933-1140 15-193 (251)
97 3rfs_A Internalin B, repeat mo 99.3 1.2E-11 4.1E-16 134.0 16.6 200 952-1169 37-241 (272)
98 1w5s_A Origin recognition comp 99.3 2.4E-11 8.1E-16 141.2 20.0 302 79-395 22-387 (412)
99 2fna_A Conserved hypothetical 99.3 4.8E-11 1.7E-15 135.7 20.3 281 77-399 11-356 (357)
100 1h6t_A Internalin B; cell adhe 99.3 6E-12 2E-16 137.5 10.6 165 481-676 45-209 (291)
101 2ca6_A RAN GTPase-activating p 99.3 1.3E-13 4.4E-18 158.6 -3.0 223 932-1161 32-314 (386)
102 3cvr_A Invasion plasmid antige 99.3 2.6E-11 8.9E-16 143.6 16.4 185 933-1166 60-246 (571)
103 2ca6_A RAN GTPase-activating p 99.3 4.7E-13 1.6E-17 153.8 0.7 180 444-631 26-228 (386)
104 4ezg_A Putative uncharacterize 99.2 2E-11 6.7E-16 125.0 11.2 151 1001-1183 41-191 (197)
105 3cvr_A Invasion plasmid antige 99.2 1E-10 3.5E-15 138.5 17.0 155 1004-1185 80-242 (571)
106 1m9s_A Internalin B; cell inva 99.2 2E-11 7E-16 146.4 10.5 166 480-676 41-206 (605)
107 1h6t_A Internalin B; cell adhe 99.2 5.1E-11 1.7E-15 130.1 11.9 173 979-1168 45-217 (291)
108 4ezg_A Putative uncharacterize 99.2 5.2E-11 1.8E-15 121.8 11.2 149 978-1160 42-191 (197)
109 3goz_A Leucine-rich repeat-con 99.2 1.1E-12 3.8E-17 148.9 -2.6 229 929-1161 19-295 (362)
110 1m9s_A Internalin B; cell inva 99.2 8.9E-11 3E-15 140.9 13.4 76 933-1014 44-119 (605)
111 3goz_A Leucine-rich repeat-con 99.2 5.1E-12 1.8E-16 143.4 2.4 240 937-1184 3-295 (362)
112 1xeu_A Internalin C; cellular 99.1 1.3E-10 4.4E-15 124.7 10.8 162 934-1108 21-182 (263)
113 2o6s_A Variable lymphocyte rec 99.1 9.2E-10 3.1E-14 113.7 14.2 106 930-1038 26-135 (208)
114 2o6s_A Variable lymphocyte rec 99.1 1.7E-09 5.9E-14 111.7 15.4 57 956-1014 28-86 (208)
115 2v70_A SLIT-2, SLIT homolog 2 99.1 1.2E-09 4E-14 113.7 14.1 109 1047-1161 54-164 (220)
116 1xeu_A Internalin C; cellular 99.1 2.1E-10 7.3E-15 123.0 8.6 81 478-574 37-117 (263)
117 2v9t_B SLIT homolog 2 protein 99.1 1.4E-09 4.7E-14 113.1 14.5 149 983-1161 14-163 (220)
118 2xot_A Amphoterin-induced prot 99.0 9.3E-10 3.2E-14 124.5 14.1 123 935-1085 21-148 (361)
119 2qby_B CDC6 homolog 3, cell di 99.0 1.3E-08 4.3E-13 116.8 23.8 283 79-382 20-339 (384)
120 3e6j_A Variable lymphocyte rec 99.0 1.5E-09 5.1E-14 113.7 14.6 147 1006-1161 21-170 (229)
121 2xot_A Amphoterin-induced prot 99.0 6.4E-10 2.2E-14 125.8 12.5 168 983-1160 21-199 (361)
122 3sb4_A Hypothetical leucine ri 99.0 2.9E-10 9.9E-15 127.0 9.6 255 907-1179 24-327 (329)
123 2v1u_A Cell division control p 99.0 8.9E-09 3E-13 118.3 22.1 282 79-382 19-351 (387)
124 2v9t_B SLIT homolog 2 protein 99.0 1.7E-09 5.8E-14 112.4 14.3 128 1050-1184 32-163 (220)
125 3e6j_A Variable lymphocyte rec 99.0 2.2E-09 7.4E-14 112.5 14.7 144 981-1134 20-168 (229)
126 2ell_A Acidic leucine-rich nuc 99.0 1.3E-09 4.5E-14 108.1 11.2 116 1047-1168 46-164 (168)
127 3sb4_A Hypothetical leucine ri 99.0 2.6E-10 8.8E-15 127.4 6.7 237 907-1157 48-328 (329)
128 1fnn_A CDC6P, cell division co 99.0 3.4E-08 1.2E-12 113.5 23.6 286 79-382 17-351 (389)
129 2qby_A CDC6 homolog 1, cell di 99.0 8.8E-09 3E-13 118.4 18.0 284 78-381 19-347 (386)
130 2v70_A SLIT-2, SLIT homolog 2 98.9 6E-09 2E-13 108.3 13.8 127 1051-1184 33-164 (220)
131 1dce_A Protein (RAB geranylger 98.9 1.7E-10 5.8E-15 137.7 0.7 186 512-741 346-546 (567)
132 4fdw_A Leucine rich hypothetic 98.9 1.2E-07 3.9E-12 107.9 22.8 211 957-1183 158-380 (401)
133 1dce_A Protein (RAB geranylger 98.9 2.5E-11 8.5E-16 144.9 -8.8 199 932-1156 349-566 (567)
134 4fdw_A Leucine rich hypothetic 98.8 1.2E-07 4.1E-12 107.8 21.6 213 933-1160 158-380 (401)
135 2ell_A Acidic leucine-rich nuc 98.8 7.7E-09 2.6E-13 102.5 9.8 129 929-1060 21-157 (168)
136 1a9n_A U2A', U2A'; complex (nu 98.8 2E-09 6.9E-14 107.6 4.7 84 478-575 15-100 (176)
137 2je0_A Acidic leucine-rich nuc 98.8 7.5E-09 2.6E-13 100.2 7.9 107 1047-1158 39-148 (149)
138 2wfh_A SLIT homolog 2 protein 98.8 3.8E-08 1.3E-12 99.6 12.5 123 1053-1184 13-137 (193)
139 1w8a_A SLIT protein; signaling 98.8 3.4E-08 1.2E-12 100.1 12.2 105 1074-1183 30-136 (192)
140 2je0_A Acidic leucine-rich nuc 98.7 8.5E-09 2.9E-13 99.8 6.5 127 1048-1182 15-149 (149)
141 2o6r_A Variable lymphocyte rec 98.7 6.7E-08 2.3E-12 96.6 12.4 107 1072-1184 27-135 (177)
142 4b8c_D Glucose-repressible alc 98.7 4.3E-09 1.5E-13 129.9 4.3 118 947-1090 215-333 (727)
143 4fs7_A Uncharacterized protein 98.7 3.5E-07 1.2E-11 104.7 19.9 212 951-1182 157-375 (394)
144 4fs7_A Uncharacterized protein 98.7 6.3E-07 2.2E-11 102.6 21.3 209 932-1160 162-376 (394)
145 1a9n_A U2A', U2A'; complex (nu 98.7 1.8E-08 6.3E-13 100.6 6.9 104 483-599 43-150 (176)
146 2wfh_A SLIT homolog 2 protein 98.6 9.9E-08 3.4E-12 96.5 11.3 65 1093-1161 73-137 (193)
147 4b8c_D Glucose-repressible alc 98.6 2.9E-08 9.9E-13 122.5 8.7 113 473-600 215-327 (727)
148 1njg_A DNA polymerase III subu 98.6 3.4E-08 1.2E-12 105.4 8.1 180 79-281 23-231 (250)
149 1ds9_A Outer arm dynein; leuci 98.6 1E-09 3.6E-14 112.1 -3.9 109 476-599 42-150 (198)
150 2o6r_A Variable lymphocyte rec 98.6 5.6E-08 1.9E-12 97.2 8.5 108 450-576 28-137 (177)
151 1w8a_A SLIT protein; signaling 98.6 1.6E-07 5.6E-12 95.0 11.5 122 1007-1134 11-135 (192)
152 1ds9_A Outer arm dynein; leuci 98.6 5.1E-10 1.7E-14 114.5 -8.4 68 506-576 39-106 (198)
153 2r9u_A Variable lymphocyte rec 98.5 9.5E-08 3.2E-12 94.7 7.4 84 482-576 33-118 (174)
154 1hqc_A RUVB; extended AAA-ATPa 98.5 1.6E-07 5.3E-12 104.7 9.5 277 79-381 12-324 (324)
155 3g39_A Variable lymphocyte rec 98.5 1.6E-07 5.6E-12 92.7 7.4 84 482-576 30-115 (170)
156 2r9u_A Variable lymphocyte rec 98.4 1.5E-07 5.1E-12 93.3 5.4 94 450-562 33-127 (174)
157 2chg_A Replication factor C sm 98.4 3E-06 1E-10 88.5 15.5 178 79-279 17-205 (226)
158 3g39_A Variable lymphocyte rec 98.4 9E-07 3.1E-11 87.3 9.8 104 1051-1161 10-113 (170)
159 4gt6_A Cell surface protein; l 98.3 5.9E-05 2E-09 86.1 22.8 77 932-1013 137-214 (394)
160 4h09_A Hypothetical leucine ri 98.2 0.00015 5E-09 82.4 25.5 113 1046-1169 236-350 (379)
161 2ifg_A High affinity nerve gro 98.2 2.4E-06 8.2E-11 96.0 8.1 91 474-576 24-116 (347)
162 1sxj_B Activator 1 37 kDa subu 98.1 7.3E-06 2.5E-10 91.1 11.4 177 79-279 21-211 (323)
163 4gt6_A Cell surface protein; l 98.1 0.00056 1.9E-08 77.9 25.7 102 1072-1183 264-367 (394)
164 3e4g_A ATP synthase subunit S, 98.0 8.1E-06 2.8E-10 78.8 6.2 88 932-1019 61-154 (176)
165 3e4g_A ATP synthase subunit S, 97.9 3.1E-06 1.1E-10 81.7 2.6 89 1074-1165 62-154 (176)
166 2ifg_A High affinity nerve gro 97.9 2E-05 6.9E-10 88.4 9.6 101 1032-1139 13-116 (347)
167 3pfi_A Holliday junction ATP-d 97.9 0.00014 4.6E-09 81.1 15.8 190 78-277 28-226 (338)
168 1iqp_A RFCS; clamp loader, ext 97.8 7.3E-05 2.5E-09 83.0 12.4 178 79-280 25-214 (327)
169 3te6_A Regulatory protein SIR3 97.8 7.4E-05 2.5E-09 80.3 11.7 163 80-245 21-212 (318)
170 2ra8_A Uncharacterized protein 97.8 9.1E-06 3.1E-10 90.3 4.7 35 1124-1160 278-317 (362)
171 4h09_A Hypothetical leucine ri 97.8 0.0034 1.2E-07 71.0 25.8 127 1044-1181 211-341 (379)
172 1jr3_A DNA polymerase III subu 97.7 0.00028 9.7E-09 79.9 14.9 177 79-278 16-221 (373)
173 3un9_A NLR family member X1; l 97.7 4.7E-06 1.6E-10 93.6 -0.6 111 482-599 72-193 (372)
174 3un9_A NLR family member X1; l 97.7 1.4E-05 4.7E-10 89.8 2.7 138 481-630 100-250 (372)
175 2ra8_A Uncharacterized protein 97.6 3.8E-05 1.3E-09 85.4 5.8 36 953-991 169-204 (362)
176 2chq_A Replication factor C sm 97.6 0.00034 1.2E-08 77.2 12.4 177 79-278 17-204 (319)
177 3rw6_A Nuclear RNA export fact 97.5 3.5E-05 1.2E-09 80.8 3.0 84 477-569 165-257 (267)
178 3bos_A Putative DNA replicatio 97.5 0.00014 4.6E-09 76.7 7.5 170 79-277 28-216 (242)
179 2z4s_A Chromosomal replication 97.3 0.0012 3.9E-08 75.8 12.5 150 106-275 130-303 (440)
180 1io0_A Tropomodulin; LRR prote 97.2 0.00014 4.7E-09 72.6 3.5 121 473-600 27-162 (185)
181 3h4m_A Proteasome-activating n 97.2 0.0058 2E-07 65.8 16.4 183 78-276 16-229 (285)
182 1sxj_D Activator 1 41 kDa subu 97.2 0.00092 3.1E-08 74.9 10.2 174 79-276 37-233 (353)
183 3syl_A Protein CBBX; photosynt 97.2 0.0026 8.8E-08 69.6 13.5 162 80-245 32-218 (309)
184 1sxj_A Activator 1 95 kDa subu 97.1 0.0015 5.1E-08 76.8 11.6 190 79-279 39-254 (516)
185 1d2n_A N-ethylmaleimide-sensit 97.1 0.014 4.7E-07 62.3 17.6 48 79-129 33-87 (272)
186 1jbk_A CLPB protein; beta barr 97.1 0.0004 1.4E-08 70.0 5.1 46 79-130 22-67 (195)
187 3n70_A Transport activator; si 97.1 0.00056 1.9E-08 64.9 5.7 60 80-145 2-61 (145)
188 3d8b_A Fidgetin-like protein 1 97.0 0.0082 2.8E-07 66.8 15.8 191 79-279 84-296 (357)
189 2qz4_A Paraplegin; AAA+, SPG7, 97.0 0.0067 2.3E-07 64.4 14.4 191 79-276 6-220 (262)
190 3uk6_A RUVB-like 2; hexameric 97.0 0.01 3.5E-07 66.7 16.6 47 79-129 44-93 (368)
191 3rw6_A Nuclear RNA export fact 97.0 0.00011 3.9E-09 76.9 -0.1 87 481-576 140-233 (267)
192 2p65_A Hypothetical protein PF 97.0 0.0005 1.7E-08 68.8 4.6 45 79-129 22-66 (187)
193 1l8q_A Chromosomal replication 96.9 0.0082 2.8E-07 66.0 14.0 144 106-271 37-201 (324)
194 1sxj_E Activator 1 40 kDa subu 96.9 0.0042 1.4E-07 69.4 11.7 72 202-277 162-236 (354)
195 3pxg_A Negative regulator of g 96.8 0.0046 1.6E-07 71.5 12.1 45 79-129 180-224 (468)
196 1a5t_A Delta prime, HOLB; zinc 96.8 0.016 5.4E-07 63.8 15.6 165 85-277 8-204 (334)
197 1xwi_A SKD1 protein; VPS4B, AA 96.8 0.044 1.5E-06 59.7 18.8 183 79-278 12-223 (322)
198 3eie_A Vacuolar protein sortin 96.8 0.0033 1.1E-07 69.0 9.9 187 79-278 18-228 (322)
199 1io0_A Tropomodulin; LRR prote 96.8 0.0004 1.4E-08 69.2 2.2 124 445-579 31-167 (185)
200 3pvs_A Replication-associated 96.8 0.0092 3.1E-07 68.1 13.4 171 79-275 26-212 (447)
201 3u61_B DNA polymerase accessor 96.5 0.015 5.2E-07 63.8 12.7 46 79-129 26-71 (324)
202 3vfd_A Spastin; ATPase, microt 96.5 0.0093 3.2E-07 67.4 11.1 52 78-129 114-171 (389)
203 1sxj_C Activator 1 40 kDa subu 96.5 0.015 5E-07 64.4 12.4 171 79-273 25-207 (340)
204 2zan_A Vacuolar protein sortin 96.4 0.032 1.1E-06 63.9 15.2 51 79-129 134-190 (444)
205 2qp9_X Vacuolar protein sortin 96.4 0.04 1.4E-06 61.1 15.1 51 79-129 51-107 (355)
206 3b9p_A CG5977-PA, isoform A; A 96.4 0.012 4.3E-07 63.6 10.7 188 79-278 21-233 (297)
207 1in4_A RUVB, holliday junction 96.4 0.051 1.7E-06 59.7 15.7 183 79-275 25-220 (334)
208 3ec2_A DNA replication protein 96.2 0.01 3.5E-07 58.6 8.0 24 107-130 39-62 (180)
209 4b4t_J 26S protease regulatory 96.1 0.18 6.3E-06 55.5 18.3 172 79-271 148-354 (405)
210 4b4t_L 26S protease subunit RP 96.1 0.053 1.8E-06 60.8 14.0 172 79-271 181-387 (437)
211 3pxi_A Negative regulator of g 95.9 0.03 1E-06 69.4 12.5 45 79-129 180-224 (758)
212 4b4t_K 26S protease regulatory 95.8 0.011 3.9E-07 66.1 7.2 51 79-129 172-229 (428)
213 2gno_A DNA polymerase III, gam 95.8 0.053 1.8E-06 58.2 12.0 141 83-244 1-152 (305)
214 3hu3_A Transitional endoplasmi 95.8 0.074 2.5E-06 61.3 13.9 51 79-129 204-261 (489)
215 3co5_A Putative two-component 95.6 0.0028 9.5E-08 59.8 1.0 47 79-129 4-50 (143)
216 4b4t_H 26S protease regulatory 95.5 0.11 3.7E-06 58.1 13.4 51 79-129 209-266 (467)
217 4b4t_M 26S protease regulatory 95.4 0.0081 2.8E-07 67.3 4.1 51 79-129 181-238 (434)
218 2w58_A DNAI, primosome compone 95.3 0.017 6E-07 58.2 5.9 61 80-143 26-90 (202)
219 1rz3_A Hypothetical protein rb 95.2 0.018 6.1E-07 58.0 5.6 44 83-129 2-45 (201)
220 4b4t_I 26S protease regulatory 95.2 0.28 9.7E-06 54.2 15.2 51 79-129 182-239 (437)
221 2bjv_A PSP operon transcriptio 94.9 0.021 7.3E-07 60.5 5.3 47 79-129 6-52 (265)
222 3cf0_A Transitional endoplasmi 94.5 0.024 8.4E-07 61.2 4.6 48 79-129 15-72 (301)
223 1qvr_A CLPB protein; coiled co 94.4 0.019 6.6E-07 72.0 3.9 45 79-129 170-214 (854)
224 3pxi_A Negative regulator of g 94.4 0.059 2E-06 66.8 8.1 65 79-144 491-558 (758)
225 1ofh_A ATP-dependent HSL prote 94.1 0.028 9.7E-07 61.2 4.0 51 79-129 15-73 (310)
226 1gvn_B Zeta; postsegregational 94.0 0.048 1.6E-06 58.2 5.4 42 87-129 15-56 (287)
227 3c8u_A Fructokinase; YP_612366 94.0 0.038 1.3E-06 55.9 4.5 39 87-129 7-45 (208)
228 1ojl_A Transcriptional regulat 94.0 0.029 9.8E-07 60.6 3.7 47 79-129 2-48 (304)
229 1r6b_X CLPA protein; AAA+, N-t 94.0 0.038 1.3E-06 68.7 5.3 45 79-129 186-230 (758)
230 1qhx_A CPT, protein (chloramph 93.9 0.028 9.5E-07 55.3 3.1 23 107-129 4-26 (178)
231 2r44_A Uncharacterized protein 93.8 0.034 1.2E-06 61.2 4.1 42 80-129 28-69 (331)
232 1lv7_A FTSH; alpha/beta domain 93.8 0.041 1.4E-06 57.9 4.5 52 78-129 11-68 (257)
233 3nbx_X ATPase RAVA; AAA+ ATPas 93.7 0.041 1.4E-06 63.3 4.5 42 80-129 23-64 (500)
234 2r62_A Cell division protease 93.7 0.032 1.1E-06 59.2 3.4 51 79-129 11-67 (268)
235 4fcw_A Chaperone protein CLPB; 93.7 0.057 1.9E-06 58.8 5.5 50 80-129 18-70 (311)
236 3kb2_A SPBC2 prophage-derived 93.6 0.031 1.1E-06 54.6 2.9 23 107-129 2-24 (173)
237 1ex7_A Guanylate kinase; subst 93.6 0.033 1.1E-06 54.5 2.9 23 107-129 2-24 (186)
238 3rfe_A Platelet glycoprotein I 93.5 0.073 2.5E-06 48.7 5.1 52 485-549 11-65 (130)
239 2c9o_A RUVB-like 1; hexameric 93.5 0.043 1.5E-06 63.2 4.3 47 79-129 37-86 (456)
240 1ly1_A Polynucleotide kinase; 93.5 0.04 1.4E-06 54.3 3.5 22 107-128 3-24 (181)
241 3tqc_A Pantothenate kinase; bi 93.5 0.071 2.4E-06 57.3 5.6 47 81-129 69-115 (321)
242 1odf_A YGR205W, hypothetical 3 93.4 0.054 1.9E-06 57.6 4.6 26 104-129 29-54 (290)
243 3lw7_A Adenylate kinase relate 93.4 0.034 1.2E-06 54.6 2.8 20 107-126 2-21 (179)
244 2p5t_B PEZT; postsegregational 93.4 0.064 2.2E-06 56.2 5.0 42 87-129 14-55 (253)
245 3vaa_A Shikimate kinase, SK; s 93.2 0.042 1.5E-06 55.1 3.2 23 107-129 26-48 (199)
246 3fwy_A Light-independent proto 93.2 0.047 1.6E-06 58.9 3.6 41 104-145 46-86 (314)
247 2ga8_A Hypothetical 39.9 kDa p 93.1 0.088 3E-06 56.8 5.6 46 82-129 2-47 (359)
248 3trf_A Shikimate kinase, SK; a 93.0 0.043 1.5E-06 54.3 2.9 23 107-129 6-28 (185)
249 3dm5_A SRP54, signal recogniti 93.0 0.21 7.3E-06 55.9 8.8 43 87-129 79-123 (443)
250 1zp6_A Hypothetical protein AT 93.0 0.055 1.9E-06 53.8 3.7 23 107-129 10-32 (191)
251 2rhm_A Putative kinase; P-loop 92.8 0.057 2E-06 53.8 3.5 25 105-129 4-28 (193)
252 3hws_A ATP-dependent CLP prote 92.8 0.076 2.6E-06 59.2 4.8 50 80-129 16-74 (363)
253 1kgd_A CASK, peripheral plasma 92.8 0.051 1.7E-06 53.4 3.0 23 107-129 6-28 (180)
254 3t15_A Ribulose bisphosphate c 92.8 0.075 2.6E-06 57.0 4.5 26 104-129 34-59 (293)
255 3rfe_A Platelet glycoprotein I 92.7 0.096 3.3E-06 47.9 4.5 44 1113-1162 24-67 (130)
256 1nks_A Adenylate kinase; therm 92.7 0.055 1.9E-06 54.0 3.2 23 107-129 2-24 (194)
257 1kag_A SKI, shikimate kinase I 92.7 0.045 1.5E-06 53.4 2.4 23 107-129 5-27 (173)
258 3uie_A Adenylyl-sulfate kinase 92.6 0.07 2.4E-06 53.5 3.8 23 107-129 26-48 (200)
259 3t61_A Gluconokinase; PSI-biol 92.5 0.044 1.5E-06 55.2 2.2 24 106-129 18-41 (202)
260 2ze6_A Isopentenyl transferase 92.5 0.061 2.1E-06 56.2 3.3 23 107-129 2-24 (253)
261 3iij_A Coilin-interacting nucl 92.5 0.051 1.7E-06 53.5 2.5 23 107-129 12-34 (180)
262 1uj2_A Uridine-cytidine kinase 92.4 0.071 2.4E-06 55.8 3.7 26 104-129 20-45 (252)
263 1kht_A Adenylate kinase; phosp 92.3 0.061 2.1E-06 53.6 2.9 23 107-129 4-26 (192)
264 1knq_A Gluconate kinase; ALFA/ 92.3 0.074 2.5E-06 52.0 3.4 24 106-129 8-31 (175)
265 1ukz_A Uridylate kinase; trans 92.3 0.077 2.6E-06 53.4 3.6 26 104-129 13-38 (203)
266 3tlx_A Adenylate kinase 2; str 92.3 0.099 3.4E-06 54.2 4.6 25 105-129 28-52 (243)
267 1tev_A UMP-CMP kinase; ploop, 92.2 0.072 2.5E-06 53.2 3.4 23 107-129 4-26 (196)
268 1zuh_A Shikimate kinase; alpha 92.2 0.065 2.2E-06 52.0 2.9 24 106-129 7-30 (168)
269 1xjc_A MOBB protein homolog; s 92.2 0.071 2.4E-06 51.0 3.1 25 105-129 3-27 (169)
270 2plr_A DTMP kinase, probable t 92.2 0.17 5.7E-06 51.3 6.2 23 107-129 5-27 (213)
271 1y63_A LMAJ004144AAA protein; 92.2 0.071 2.4E-06 52.6 3.2 24 106-129 10-33 (184)
272 2qor_A Guanylate kinase; phosp 92.1 0.061 2.1E-06 54.2 2.6 24 106-129 12-35 (204)
273 1via_A Shikimate kinase; struc 92.0 0.057 2E-06 52.8 2.3 23 107-129 5-27 (175)
274 4eun_A Thermoresistant glucoki 92.0 0.075 2.6E-06 53.3 3.2 23 107-129 30-52 (200)
275 3tau_A Guanylate kinase, GMP k 92.0 0.079 2.7E-06 53.5 3.4 23 107-129 9-31 (208)
276 3a4m_A L-seryl-tRNA(SEC) kinas 92.0 0.083 2.8E-06 55.5 3.6 24 106-129 4-27 (260)
277 1uf9_A TT1252 protein; P-loop, 92.0 0.09 3.1E-06 52.9 3.7 25 104-128 6-30 (203)
278 2c95_A Adenylate kinase 1; tra 91.9 0.076 2.6E-06 53.0 3.1 23 107-129 10-32 (196)
279 2bdt_A BH3686; alpha-beta prot 91.9 0.086 2.9E-06 52.3 3.5 22 107-128 3-24 (189)
280 2qt1_A Nicotinamide riboside k 91.9 0.094 3.2E-06 52.9 3.8 35 105-144 20-54 (207)
281 3hr8_A Protein RECA; alpha and 91.9 0.3 1E-05 53.2 7.9 50 107-162 62-111 (356)
282 3umf_A Adenylate kinase; rossm 91.9 0.092 3.2E-06 52.8 3.6 26 104-129 27-52 (217)
283 2hf9_A Probable hydrogenase ni 91.7 0.13 4.6E-06 52.6 4.8 25 105-129 37-61 (226)
284 2kjq_A DNAA-related protein; s 91.7 0.061 2.1E-06 50.7 2.0 38 107-145 37-74 (149)
285 2iyv_A Shikimate kinase, SK; t 91.7 0.064 2.2E-06 53.0 2.2 23 107-129 3-25 (184)
286 2jaq_A Deoxyguanosine kinase; 91.6 0.087 3E-06 53.1 3.2 22 108-129 2-23 (205)
287 2yvu_A Probable adenylyl-sulfa 91.6 0.1 3.6E-06 51.5 3.6 24 106-129 13-36 (186)
288 3cm0_A Adenylate kinase; ATP-b 91.5 0.095 3.3E-06 51.8 3.3 23 107-129 5-27 (186)
289 4gp7_A Metallophosphoesterase; 91.5 0.09 3.1E-06 51.1 3.0 22 107-128 10-31 (171)
290 2bwj_A Adenylate kinase 5; pho 91.5 0.083 2.8E-06 52.9 2.9 23 107-129 13-35 (199)
291 1e6c_A Shikimate kinase; phosp 91.5 0.072 2.5E-06 51.9 2.3 23 107-129 3-25 (173)
292 2qgz_A Helicase loader, putati 91.5 0.13 4.5E-06 55.4 4.6 53 87-143 136-189 (308)
293 2cdn_A Adenylate kinase; phosp 91.5 0.094 3.2E-06 52.6 3.2 25 105-129 19-43 (201)
294 2if2_A Dephospho-COA kinase; a 91.5 0.091 3.1E-06 52.9 3.1 22 107-128 2-23 (204)
295 1ixz_A ATP-dependent metallopr 91.4 0.12 4.3E-06 54.0 4.3 50 79-129 16-72 (254)
296 1qf9_A UMP/CMP kinase, protein 91.4 0.11 3.7E-06 51.8 3.6 24 106-129 6-29 (194)
297 1jjv_A Dephospho-COA kinase; P 91.4 0.11 3.6E-06 52.5 3.5 22 107-128 3-24 (206)
298 1tue_A Replication protein E1; 91.4 0.15 5E-06 50.1 4.2 37 88-129 45-81 (212)
299 1ye8_A Protein THEP1, hypothet 91.3 0.096 3.3E-06 51.1 3.0 22 108-129 2-23 (178)
300 2vli_A Antibiotic resistance p 91.3 0.066 2.2E-06 52.8 1.8 23 107-129 6-28 (183)
301 3ney_A 55 kDa erythrocyte memb 91.3 0.098 3.4E-06 51.6 3.0 24 106-129 19-42 (197)
302 1n0w_A DNA repair protein RAD5 91.3 0.25 8.7E-06 51.2 6.5 44 107-150 25-73 (243)
303 3a00_A Guanylate kinase, GMP k 91.3 0.081 2.8E-06 52.3 2.4 23 107-129 2-24 (186)
304 1aky_A Adenylate kinase; ATP:A 91.2 0.098 3.4E-06 53.4 3.1 24 106-129 4-27 (220)
305 2grj_A Dephospho-COA kinase; T 91.2 0.12 4E-06 51.2 3.5 25 105-129 11-35 (192)
306 3kl4_A SRP54, signal recogniti 91.2 0.48 1.7E-05 53.1 8.8 42 88-129 76-120 (433)
307 3tr0_A Guanylate kinase, GMP k 91.2 0.1 3.5E-06 52.5 3.2 23 107-129 8-30 (205)
308 3asz_A Uridine kinase; cytidin 91.2 0.12 4E-06 52.4 3.6 24 106-129 6-29 (211)
309 2pt5_A Shikimate kinase, SK; a 91.1 0.11 3.7E-06 50.3 3.2 22 108-129 2-23 (168)
310 2j41_A Guanylate kinase; GMP, 91.1 0.11 3.8E-06 52.4 3.3 23 107-129 7-29 (207)
311 1g8p_A Magnesium-chelatase 38 91.1 0.089 3.1E-06 58.4 2.8 45 79-129 24-68 (350)
312 2ce7_A Cell division protein F 91.0 0.18 6.1E-06 57.5 5.2 51 79-129 16-72 (476)
313 1cke_A CK, MSSA, protein (cyti 91.0 0.11 3.8E-06 53.3 3.2 23 107-129 6-28 (227)
314 2px0_A Flagellar biosynthesis 91.0 0.37 1.3E-05 51.4 7.4 25 105-129 104-128 (296)
315 1um8_A ATP-dependent CLP prote 91.0 0.17 5.7E-06 56.7 4.9 23 107-129 73-95 (376)
316 2cvh_A DNA repair and recombin 91.0 0.17 5.7E-06 51.6 4.6 41 107-151 21-61 (220)
317 2wsm_A Hydrogenase expression/ 90.9 0.14 4.7E-06 52.3 3.9 40 84-129 14-53 (221)
318 1nn5_A Similar to deoxythymidy 90.8 0.12 4E-06 52.6 3.2 24 106-129 9-32 (215)
319 1lvg_A Guanylate kinase, GMP k 90.7 0.098 3.3E-06 52.3 2.4 23 107-129 5-27 (198)
320 2z43_A DNA repair and recombin 90.7 0.31 1.1E-05 53.0 6.7 53 107-160 108-165 (324)
321 1v5w_A DMC1, meiotic recombina 90.7 0.51 1.7E-05 51.7 8.4 54 106-160 122-180 (343)
322 2wwf_A Thymidilate kinase, put 90.7 0.12 4E-06 52.5 3.0 24 106-129 10-33 (212)
323 1zd8_A GTP:AMP phosphotransfer 90.7 0.11 3.8E-06 53.3 2.9 24 106-129 7-30 (227)
324 3bh0_A DNAB-like replicative h 90.7 0.44 1.5E-05 51.5 7.7 51 107-160 69-119 (315)
325 2pbr_A DTMP kinase, thymidylat 90.6 0.13 4.3E-06 51.3 3.2 22 108-129 2-23 (195)
326 2bbw_A Adenylate kinase 4, AK4 90.6 0.12 4.2E-06 53.7 3.2 23 107-129 28-50 (246)
327 2xxa_A Signal recognition part 90.5 0.74 2.5E-05 51.9 9.7 58 86-144 77-138 (433)
328 2f6r_A COA synthase, bifunctio 90.4 0.15 5E-06 54.3 3.6 25 104-128 73-97 (281)
329 2r8r_A Sensor protein; KDPD, P 90.4 0.17 5.9E-06 50.6 3.8 37 108-145 8-44 (228)
330 3fb4_A Adenylate kinase; psych 90.4 0.13 4.5E-06 52.2 3.1 22 108-129 2-23 (216)
331 1zak_A Adenylate kinase; ATP:A 90.3 0.11 3.9E-06 53.0 2.6 24 106-129 5-28 (222)
332 3p32_A Probable GTPase RV1496/ 90.3 0.25 8.7E-06 54.5 5.5 38 88-129 65-102 (355)
333 3aez_A Pantothenate kinase; tr 90.3 0.16 5.5E-06 54.6 3.7 26 104-129 88-113 (312)
334 1iy2_A ATP-dependent metallopr 90.3 0.17 5.8E-06 53.8 4.0 51 78-129 39-96 (278)
335 1ypw_A Transitional endoplasmi 90.2 0.15 5.2E-06 63.0 4.0 51 79-129 204-261 (806)
336 3d3q_A TRNA delta(2)-isopenten 90.2 0.15 5E-06 55.0 3.3 23 107-129 8-30 (340)
337 3dl0_A Adenylate kinase; phosp 90.2 0.14 4.8E-06 52.1 3.1 22 108-129 2-23 (216)
338 4a74_A DNA repair and recombin 90.1 0.35 1.2E-05 49.6 6.2 39 107-145 26-69 (231)
339 3a8t_A Adenylate isopentenyltr 90.1 0.18 6.2E-06 54.0 3.9 24 106-129 40-63 (339)
340 2v54_A DTMP kinase, thymidylat 90.1 0.15 5.2E-06 51.2 3.3 23 107-129 5-27 (204)
341 1gtv_A TMK, thymidylate kinase 90.1 0.087 3E-06 53.5 1.4 22 108-129 2-23 (214)
342 3e70_C DPA, signal recognition 90.0 0.62 2.1E-05 50.3 8.1 25 105-129 128-152 (328)
343 2z0h_A DTMP kinase, thymidylat 90.0 0.15 5.1E-06 50.9 3.1 22 108-129 2-23 (197)
344 2pez_A Bifunctional 3'-phospho 89.8 0.18 6.1E-06 49.4 3.4 24 106-129 5-28 (179)
345 2jeo_A Uridine-cytidine kinase 89.8 0.19 6.5E-06 52.2 3.8 23 107-129 26-48 (245)
346 1m7g_A Adenylylsulfate kinase; 89.7 0.19 6.6E-06 50.8 3.7 23 107-129 26-48 (211)
347 2f1r_A Molybdopterin-guanine d 89.7 0.12 4.2E-06 49.8 2.1 23 107-129 3-25 (171)
348 1vht_A Dephospho-COA kinase; s 89.7 0.2 6.7E-06 51.0 3.8 23 106-128 4-26 (218)
349 3cf2_A TER ATPase, transitiona 89.7 0.26 8.9E-06 59.8 5.3 51 79-129 204-261 (806)
350 3exa_A TRNA delta(2)-isopenten 89.7 0.18 6.2E-06 53.2 3.4 23 107-129 4-26 (322)
351 1htw_A HI0065; nucleotide-bind 89.7 0.2 6.7E-06 47.6 3.4 23 107-129 34-56 (158)
352 2x8a_A Nuclear valosin-contain 89.6 0.15 5.3E-06 53.8 3.0 50 79-129 10-67 (274)
353 2ged_A SR-beta, signal recogni 89.6 0.27 9.1E-06 48.8 4.6 25 105-129 47-71 (193)
354 4e22_A Cytidylate kinase; P-lo 89.6 0.17 5.8E-06 52.8 3.2 23 107-129 28-50 (252)
355 1np6_A Molybdopterin-guanine d 89.5 0.18 6.3E-06 48.7 3.2 25 105-129 5-29 (174)
356 3crm_A TRNA delta(2)-isopenten 89.5 0.18 6E-06 54.0 3.3 24 106-129 5-28 (323)
357 3end_A Light-independent proto 89.5 0.27 9.1E-06 53.2 4.8 44 104-148 39-82 (307)
358 1vma_A Cell division protein F 89.5 0.25 8.7E-06 52.8 4.5 58 85-143 81-140 (306)
359 1znw_A Guanylate kinase, GMP k 89.4 0.18 6.2E-06 50.8 3.2 23 107-129 21-43 (207)
360 2qmh_A HPR kinase/phosphorylas 89.4 0.19 6.4E-06 49.0 3.1 23 107-129 35-57 (205)
361 1z6g_A Guanylate kinase; struc 89.4 0.14 4.9E-06 51.9 2.4 23 107-129 24-46 (218)
362 3foz_A TRNA delta(2)-isopenten 89.4 0.22 7.5E-06 52.5 3.8 25 105-129 9-33 (316)
363 1u94_A RECA protein, recombina 89.4 0.2 6.9E-06 54.9 3.7 42 107-149 64-105 (356)
364 3nwj_A ATSK2; P loop, shikimat 89.3 0.15 5E-06 52.8 2.4 23 107-129 49-71 (250)
365 1sq5_A Pantothenate kinase; P- 89.2 0.39 1.3E-05 51.8 5.8 24 106-129 80-103 (308)
366 1rj9_A FTSY, signal recognitio 89.2 0.19 6.5E-06 53.8 3.3 25 105-129 101-125 (304)
367 2vhj_A Ntpase P4, P4; non- hyd 89.1 0.21 7.3E-06 52.9 3.5 33 107-143 124-156 (331)
368 1g41_A Heat shock protein HSLU 89.1 0.3 1E-05 54.8 4.9 51 79-129 15-73 (444)
369 1s96_A Guanylate kinase, GMP k 89.1 0.18 6.3E-06 51.0 3.0 23 107-129 17-39 (219)
370 3r20_A Cytidylate kinase; stru 88.9 0.21 7E-06 50.8 3.1 23 107-129 10-32 (233)
371 3k1j_A LON protease, ATP-depen 88.8 0.25 8.5E-06 59.1 4.3 43 79-129 41-83 (604)
372 3m6a_A ATP-dependent protease 88.8 0.2 6.9E-06 58.8 3.4 51 79-129 81-131 (543)
373 3ake_A Cytidylate kinase; CMP 88.8 0.21 7.3E-06 50.3 3.2 22 108-129 4-25 (208)
374 2i3b_A HCR-ntpase, human cance 88.8 0.19 6.4E-06 49.5 2.6 22 108-129 3-24 (189)
375 2zr9_A Protein RECA, recombina 88.7 0.23 7.9E-06 54.4 3.6 42 107-149 62-103 (349)
376 1zu4_A FTSY; GTPase, signal re 88.7 0.29 9.8E-06 52.8 4.3 26 104-129 103-128 (320)
377 3be4_A Adenylate kinase; malar 88.7 0.2 6.9E-06 50.8 3.0 23 107-129 6-28 (217)
378 1cr0_A DNA primase/helicase; R 88.7 0.46 1.6E-05 51.0 6.0 50 107-159 36-86 (296)
379 2dhr_A FTSH; AAA+ protein, hex 88.7 0.46 1.6E-05 54.5 6.2 52 78-129 30-87 (499)
380 2i1q_A DNA repair and recombin 88.7 0.47 1.6E-05 51.6 6.1 54 107-161 99-167 (322)
381 1ak2_A Adenylate kinase isoenz 88.7 0.22 7.5E-06 51.3 3.3 23 107-129 17-39 (233)
382 1e4v_A Adenylate kinase; trans 88.6 0.21 7.1E-06 50.6 3.0 22 108-129 2-23 (214)
383 2xb4_A Adenylate kinase; ATP-b 88.6 0.21 7.2E-06 51.0 3.1 22 108-129 2-23 (223)
384 1yrb_A ATP(GTP)binding protein 88.6 0.26 8.8E-06 51.9 3.8 26 104-129 12-37 (262)
385 3lv8_A DTMP kinase, thymidylat 88.5 0.49 1.7E-05 48.3 5.7 36 107-142 28-63 (236)
386 3sr0_A Adenylate kinase; phosp 88.5 0.23 7.9E-06 49.6 3.1 22 108-129 2-23 (206)
387 3b9q_A Chloroplast SRP recepto 88.4 0.26 8.8E-06 52.7 3.6 39 105-145 99-137 (302)
388 1pgv_A TMD-1, tropomodulin TMD 88.2 0.23 8E-06 48.7 2.9 119 474-599 33-167 (197)
389 2yhs_A FTSY, cell division pro 88.1 0.51 1.8E-05 53.4 5.9 41 105-147 292-332 (503)
390 2wji_A Ferrous iron transport 88.0 0.32 1.1E-05 46.8 3.8 23 107-129 4-26 (165)
391 4eaq_A DTMP kinase, thymidylat 88.0 0.51 1.8E-05 48.2 5.5 24 106-129 26-49 (229)
392 4tmk_A Protein (thymidylate ki 87.9 0.61 2.1E-05 46.8 5.8 51 107-157 4-54 (213)
393 2ehv_A Hypothetical protein PH 87.8 0.26 8.7E-06 51.5 3.2 22 107-128 31-52 (251)
394 3zvl_A Bifunctional polynucleo 87.8 0.25 8.5E-06 55.8 3.2 25 105-129 257-281 (416)
395 1ltq_A Polynucleotide kinase; 87.8 0.28 9.5E-06 52.9 3.5 23 107-129 3-25 (301)
396 2dr3_A UPF0273 protein PH0284; 87.7 0.32 1.1E-05 50.5 3.9 38 107-145 24-61 (247)
397 3tif_A Uncharacterized ABC tra 87.7 0.34 1.2E-05 49.6 4.0 33 107-141 32-64 (235)
398 1a7j_A Phosphoribulokinase; tr 87.7 0.15 5.1E-06 54.4 1.2 24 106-129 5-28 (290)
399 3lnc_A Guanylate kinase, GMP k 87.7 0.18 6.2E-06 51.9 1.8 23 107-129 28-51 (231)
400 1cp2_A CP2, nitrogenase iron p 87.6 0.47 1.6E-05 50.0 5.2 40 107-147 2-41 (269)
401 3lda_A DNA repair protein RAD5 87.6 0.66 2.3E-05 51.6 6.4 54 107-161 179-237 (400)
402 2dyk_A GTP-binding protein; GT 87.6 0.32 1.1E-05 46.3 3.5 23 107-129 2-24 (161)
403 1pgv_A TMD-1, tropomodulin TMD 87.6 0.25 8.7E-06 48.4 2.7 118 509-627 35-165 (197)
404 2j37_W Signal recognition part 87.4 1.4 4.7E-05 50.5 9.0 56 87-143 79-137 (504)
405 4g1u_C Hemin import ATP-bindin 87.3 0.45 1.5E-05 49.8 4.6 33 107-141 38-70 (266)
406 3gfo_A Cobalt import ATP-bindi 87.3 0.37 1.3E-05 50.6 4.0 33 107-141 35-67 (275)
407 4a1f_A DNAB helicase, replicat 87.2 0.87 3E-05 49.2 6.9 52 107-161 47-98 (338)
408 2onk_A Molybdate/tungstate ABC 87.2 0.29 1E-05 50.3 3.1 23 107-129 25-47 (240)
409 1nlf_A Regulatory protein REPA 87.2 0.44 1.5E-05 50.5 4.6 23 107-129 31-53 (279)
410 1xp8_A RECA protein, recombina 87.1 0.33 1.1E-05 53.3 3.6 43 107-150 75-117 (366)
411 2og2_A Putative signal recogni 87.1 0.34 1.2E-05 52.9 3.7 25 105-129 156-180 (359)
412 1oix_A RAS-related protein RAB 87.1 0.31 1.1E-05 48.3 3.1 24 106-129 29-52 (191)
413 3io5_A Recombination and repai 87.0 0.61 2.1E-05 49.2 5.3 50 108-163 30-81 (333)
414 1mv5_A LMRA, multidrug resista 87.0 0.48 1.6E-05 48.9 4.6 33 107-141 29-61 (243)
415 1b0u_A Histidine permease; ABC 87.0 0.4 1.4E-05 50.1 4.0 33 107-141 33-65 (262)
416 2zej_A Dardarin, leucine-rich 87.0 0.28 9.6E-06 48.2 2.7 22 108-129 4-25 (184)
417 1svm_A Large T antigen; AAA+ f 86.9 0.53 1.8E-05 51.9 5.1 23 107-129 170-192 (377)
418 2v3c_C SRP54, signal recogniti 86.9 0.36 1.2E-05 54.4 3.8 43 87-129 77-122 (432)
419 2afh_E Nitrogenase iron protei 86.8 0.34 1.2E-05 51.8 3.5 40 107-147 3-42 (289)
420 1j8m_F SRP54, signal recogniti 86.8 1.2 4.3E-05 47.2 7.8 38 106-144 98-135 (297)
421 3iqw_A Tail-anchored protein t 86.8 0.68 2.3E-05 50.2 5.8 46 106-152 16-61 (334)
422 2pcj_A ABC transporter, lipopr 86.8 0.3 1E-05 49.7 2.9 23 107-129 31-53 (224)
423 4edh_A DTMP kinase, thymidylat 86.7 0.96 3.3E-05 45.4 6.5 31 107-137 7-37 (213)
424 1pzn_A RAD51, DNA repair and r 86.6 0.62 2.1E-05 51.1 5.5 41 107-147 132-177 (349)
425 1ls1_A Signal recognition part 86.5 0.39 1.3E-05 51.3 3.6 25 105-129 97-121 (295)
426 2ocp_A DGK, deoxyguanosine kin 86.5 0.37 1.3E-05 49.8 3.4 23 107-129 3-25 (241)
427 3eph_A TRNA isopentenyltransfe 86.5 0.34 1.2E-05 53.2 3.2 23 107-129 3-25 (409)
428 2ff7_A Alpha-hemolysin translo 86.4 0.46 1.6E-05 49.1 4.0 33 107-141 36-68 (247)
429 2lkc_A Translation initiation 86.3 0.52 1.8E-05 45.8 4.3 26 105-130 7-32 (178)
430 2w0m_A SSO2452; RECA, SSPF, un 86.3 0.36 1.2E-05 49.7 3.2 36 107-143 24-59 (235)
431 2cbz_A Multidrug resistance-as 86.3 0.34 1.2E-05 49.7 3.0 23 107-129 32-54 (237)
432 3b85_A Phosphate starvation-in 86.3 0.27 9.3E-06 49.2 2.2 22 107-128 23-44 (208)
433 3io3_A DEHA2D07832P; chaperone 86.2 0.68 2.3E-05 50.5 5.4 45 105-150 17-63 (348)
434 3kjh_A CO dehydrogenase/acetyl 86.1 0.68 2.3E-05 48.2 5.3 42 109-151 3-44 (254)
435 2f9l_A RAB11B, member RAS onco 86.0 0.39 1.3E-05 47.9 3.2 24 106-129 5-28 (199)
436 3ld9_A DTMP kinase, thymidylat 86.0 0.8 2.7E-05 46.2 5.4 26 105-130 20-45 (223)
437 1q3t_A Cytidylate kinase; nucl 86.0 0.4 1.4E-05 49.4 3.3 26 104-129 14-39 (236)
438 2ixe_A Antigen peptide transpo 85.9 0.48 1.7E-05 49.7 4.0 33 107-141 46-78 (271)
439 3cwq_A Para family chromosome 85.8 0.83 2.8E-05 45.8 5.6 41 108-150 2-43 (209)
440 2zts_A Putative uncharacterize 85.7 0.36 1.2E-05 50.3 2.8 39 107-145 31-69 (251)
441 1sgw_A Putative ABC transporte 85.7 0.33 1.1E-05 48.8 2.4 23 107-129 36-58 (214)
442 2ce2_X GTPase HRAS; signaling 85.7 0.39 1.3E-05 45.9 2.9 23 108-130 5-27 (166)
443 4dzz_A Plasmid partitioning pr 85.6 0.6 2E-05 46.8 4.4 42 107-149 2-44 (206)
444 1ji0_A ABC transporter; ATP bi 85.6 0.39 1.3E-05 49.5 3.0 33 107-141 33-65 (240)
445 2olj_A Amino acid ABC transpor 85.6 0.39 1.3E-05 50.1 3.0 33 107-141 51-83 (263)
446 2wjg_A FEOB, ferrous iron tran 85.5 0.49 1.7E-05 46.6 3.6 24 106-129 7-30 (188)
447 2d2e_A SUFC protein; ABC-ATPas 85.5 0.42 1.4E-05 49.6 3.2 22 107-128 30-51 (250)
448 1r6b_X CLPA protein; AAA+, N-t 85.4 0.57 1.9E-05 58.0 4.9 51 79-129 458-511 (758)
449 1z2a_A RAS-related protein RAB 85.3 0.42 1.5E-05 45.8 3.0 25 106-130 5-29 (168)
450 4dkx_A RAS-related protein RAB 85.3 0.44 1.5E-05 48.1 3.2 23 108-130 15-37 (216)
451 2pze_A Cystic fibrosis transme 85.3 0.41 1.4E-05 48.9 3.0 23 107-129 35-57 (229)
452 3con_A GTPase NRAS; structural 85.3 0.42 1.4E-05 47.2 3.0 24 107-130 22-45 (190)
453 2v9p_A Replication protein E1; 85.3 0.43 1.5E-05 50.7 3.2 23 107-129 127-149 (305)
454 1g6h_A High-affinity branched- 85.3 0.41 1.4E-05 49.9 3.0 33 107-141 34-66 (257)
455 2zu0_C Probable ATP-dependent 85.3 0.43 1.5E-05 50.0 3.2 23 107-129 47-69 (267)
456 1vpl_A ABC transporter, ATP-bi 85.1 0.42 1.4E-05 49.6 3.0 33 107-141 42-74 (256)
457 2eyu_A Twitching motility prot 85.1 0.48 1.7E-05 49.4 3.4 23 107-129 26-48 (261)
458 3c5c_A RAS-like protein 12; GD 85.0 0.57 2E-05 46.1 3.8 24 107-130 22-45 (187)
459 1c1y_A RAS-related protein RAP 84.9 0.59 2E-05 44.7 3.9 23 108-130 5-27 (167)
460 3gmt_A Adenylate kinase; ssgci 84.9 0.46 1.6E-05 47.9 3.1 23 107-129 9-31 (230)
461 2ghi_A Transport protein; mult 84.9 0.43 1.5E-05 49.8 3.0 32 107-141 47-78 (260)
462 1u8z_A RAS-related protein RAL 84.9 0.59 2E-05 44.7 3.8 24 107-130 5-28 (168)
463 1m7b_A RND3/RHOE small GTP-bin 84.8 0.63 2.2E-05 45.6 4.0 25 106-130 7-31 (184)
464 1z08_A RAS-related protein RAB 84.8 0.59 2E-05 44.9 3.8 25 106-130 6-30 (170)
465 2qi9_C Vitamin B12 import ATP- 84.8 0.45 1.5E-05 49.2 3.0 32 107-141 27-58 (249)
466 2gj8_A MNME, tRNA modification 84.7 0.47 1.6E-05 46.0 3.0 23 107-129 5-27 (172)
467 1p5z_B DCK, deoxycytidine kina 84.7 0.35 1.2E-05 50.8 2.2 24 106-129 24-47 (263)
468 2ffh_A Protein (FFH); SRP54, s 84.5 0.77 2.6E-05 51.4 4.9 38 105-143 97-134 (425)
469 2nzj_A GTP-binding protein REM 84.4 0.61 2.1E-05 45.1 3.7 24 106-129 4-27 (175)
470 2nq2_C Hypothetical ABC transp 84.4 0.47 1.6E-05 49.2 3.0 23 107-129 32-54 (253)
471 2yz2_A Putative ABC transporte 84.3 0.48 1.6E-05 49.7 3.0 33 107-141 34-66 (266)
472 3tqf_A HPR(Ser) kinase; transf 84.2 0.63 2.1E-05 44.0 3.4 23 107-129 17-39 (181)
473 2axn_A 6-phosphofructo-2-kinas 84.2 0.54 1.8E-05 54.6 3.7 24 106-129 35-58 (520)
474 2ihy_A ABC transporter, ATP-bi 84.2 0.48 1.6E-05 49.9 3.0 23 107-129 48-70 (279)
475 1kao_A RAP2A; GTP-binding prot 84.2 0.66 2.3E-05 44.3 3.8 24 107-130 4-27 (167)
476 2orw_A Thymidine kinase; TMTK, 84.1 0.49 1.7E-05 46.3 2.8 23 107-129 4-26 (184)
477 3ihw_A Centg3; RAS, centaurin, 84.1 0.51 1.7E-05 46.3 3.0 24 107-130 21-44 (184)
478 2vp4_A Deoxynucleoside kinase; 84.1 0.48 1.7E-05 48.5 2.9 25 105-129 19-43 (230)
479 1g8f_A Sulfate adenylyltransfe 84.1 0.58 2E-05 53.6 3.8 46 81-130 374-419 (511)
480 1svi_A GTP-binding protein YSX 84.0 0.56 1.9E-05 46.4 3.3 24 106-129 23-46 (195)
481 2q6t_A DNAB replication FORK h 84.0 1.6 5.4E-05 49.8 7.4 52 107-160 201-252 (444)
482 1qvr_A CLPB protein; coiled co 84.0 0.67 2.3E-05 58.0 4.6 50 80-129 559-611 (854)
483 2aka_B Dynamin-1; fusion prote 84.0 1.1 3.6E-05 48.1 5.7 43 88-130 8-50 (299)
484 3q72_A GTP-binding protein RAD 84.0 0.45 1.5E-05 45.6 2.5 22 108-129 4-25 (166)
485 1u0j_A DNA replication protein 83.9 0.99 3.4E-05 46.6 5.0 23 107-129 105-127 (267)
486 2erx_A GTP-binding protein DI- 83.9 0.53 1.8E-05 45.3 3.0 23 107-129 4-26 (172)
487 4dsu_A GTPase KRAS, isoform 2B 83.8 0.69 2.4E-05 45.4 3.9 24 107-130 5-28 (189)
488 3kkq_A RAS-related protein M-R 83.8 0.69 2.4E-05 45.2 3.8 25 106-130 18-42 (183)
489 1z0j_A RAB-22, RAS-related pro 83.7 0.55 1.9E-05 45.1 3.0 24 107-130 7-30 (170)
490 1nrj_B SR-beta, signal recogni 83.7 0.6 2.1E-05 47.3 3.4 26 105-130 11-36 (218)
491 1ek0_A Protein (GTP-binding pr 83.6 0.56 1.9E-05 45.1 3.0 23 108-130 5-27 (170)
492 4b3f_X DNA-binding protein smu 83.6 1.5 5.2E-05 52.8 7.4 62 86-157 193-254 (646)
493 3nh6_A ATP-binding cassette SU 83.5 0.49 1.7E-05 50.5 2.7 22 107-128 81-102 (306)
494 1jr3_D DNA polymerase III, del 83.5 2.6 8.9E-05 46.1 8.7 155 107-277 19-184 (343)
495 1r8s_A ADP-ribosylation factor 83.4 0.57 2E-05 44.7 3.0 21 109-129 3-23 (164)
496 3q85_A GTP-binding protein REM 83.3 0.7 2.4E-05 44.3 3.6 22 107-128 3-24 (169)
497 2ck3_D ATP synthase subunit be 83.3 2 6.7E-05 48.2 7.4 53 107-159 154-207 (482)
498 2hxs_A RAB-26, RAS-related pro 83.3 0.61 2.1E-05 45.3 3.2 24 106-129 6-29 (178)
499 3sop_A Neuronal-specific septi 83.1 0.59 2E-05 49.0 3.1 22 108-129 4-25 (270)
500 1wms_A RAB-9, RAB9, RAS-relate 83.1 0.6 2.1E-05 45.3 3.0 25 106-130 7-31 (177)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=7e-44 Score=448.74 Aligned_cols=652 Identities=14% Similarity=0.069 Sum_probs=384.6
Q ss_pred hhhhcCCCCcceEEEcCCCCcccccccccccccChhhhcccccCcEEecccccccccccc--cccccccccEEeecCCcc
Q 039990 474 LSDLLPKCKKLRVLSLEKDNIAEVPISIGCLKCLPEAITSLFNLEILILSYCWCLLKLPS--SIGNLVNLHHLDIEGADR 551 (1217)
Q Consensus 474 ~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~lp~~i~~L~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L~l~~~~~ 551 (1217)
++..|.+++.|++++++.+.+..+ |..|+++++|++|+|++|.....+|. .++++++|++|++++|..
T Consensus 69 l~~~l~~L~~L~~l~~~~~~~~~l----------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l 138 (768)
T 3rgz_A 69 VSSSLLSLTGLESLFLSNSHINGS----------VSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL 138 (768)
T ss_dssp HHHHTTTCTTCCEEECTTSCEEEC----------CCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEE
T ss_pred cChhHhccCcccccCCcCCCcCCC----------chhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCcc
Confidence 456688899999999999887644 45688899999999999955556887 899999999999999944
Q ss_pred ccccCCCC-ccCcccccccccccccChhhhHH-HHhcCCCCCCeEEEEecCCCCchhhHHHHhcccCCCCCccEEEEEee
Q 039990 552 LCELPLGM-KELKCLRTLTDFINVIDSQEANE-AMLRGKKDLEVLKLVWSGGPVDELREKNILDMLKPHCNIKRLEIISY 629 (1217)
Q Consensus 552 l~~lp~~i-~~L~~L~~L~~~~n~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~ 629 (1217)
...+|..+ .++++|++|++..|......... ..+.++++|+.|+++.+.... ......+++|+.|+++++
T Consensus 139 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~--------~~~~~~l~~L~~L~Ls~n 210 (768)
T 3rgz_A 139 DFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISG--------DVDVSRCVNLEFLDVSSN 210 (768)
T ss_dssp ECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEES--------CCBCTTCTTCCEEECCSS
T ss_pred CCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccc--------cCCcccCCcCCEEECcCC
Confidence 44556655 88999999998877665433222 236778888888876443211 011234566666666666
Q ss_pred CCCCCCCCcCCCCcCcccEEEEecCCCCCCCC-CCCCcCCCCeeEEcCCCCceEeCccccCCCCcccCcccceeeccccc
Q 039990 630 GSTRFPSWVGDPSFSNVAVLKLENCDRCTSLP-SLGQLCSLKDLTIVGMSALKSVGSEIYGEGCSKPFRSLQTLYFEDLQ 708 (1217)
Q Consensus 630 ~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 708 (1217)
.....+..+. .+++|+.|++++|.....+| .++.+++|++|+++++.....++.. .+++|+.|+++++.
T Consensus 211 ~l~~~~~~l~--~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--------~l~~L~~L~L~~n~ 280 (768)
T 3rgz_A 211 NFSTGIPFLG--DCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--------PLKSLQYLSLAENK 280 (768)
T ss_dssp CCCSCCCBCT--TCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--------CCTTCCEEECCSSE
T ss_pred cCCCCCcccc--cCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--------ccCCCCEEECcCCc
Confidence 5554332233 25666666666655443444 3666666666666654322222111 25566666666554
Q ss_pred cccccccCCccccccc-cCccccEEeecCCCCccCCCCC---CCCCccEEEEccCCCc---cc-cCCCCCcccEEEEccC
Q 039990 709 EWEHWEPNRENDEHVQ-AFSHLRKLSIKRCPKLSGRLPN---HLPSLEEIVIAGCMHL---AV-SLPSLPALCTMEIDGC 780 (1217)
Q Consensus 709 ~l~~~~~~~~~~~~~~-~~~~L~~L~l~~c~~L~~~~p~---~l~~L~~L~l~~c~~l---~~-~~~~l~~L~~L~l~~~ 780 (1217)
...... ..+. .+++|+.|++++| .+.+.+|. .+++|+.|++++|... .. .+..+++|++|++++|
T Consensus 281 l~~~ip------~~~~~~~~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n 353 (768)
T 3rgz_A 281 FTGEIP------DFLSGACDTLTGLDLSGN-HFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 353 (768)
T ss_dssp EEESCC------CCSCTTCTTCSEEECCSS-EEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSS
T ss_pred cCCccC------HHHHhhcCcCCEEECcCC-cCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCC
Confidence 321111 0010 2356666666665 33333443 3455666666655332 11 1344555555555554
Q ss_pred CCccccCCCCCCCccceeecccccccccccccccccc-ceeeeccccCCCccccccccccC--CCcccEEEEeccCCccc
Q 039990 781 KRLVCDGPSESKSLNEMALCNISKFENWSMENLVRFG-FYSVDTSKDCNALTSLTDGMIHN--NVRLEVLRIIGCHSLKS 857 (1217)
Q Consensus 781 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~-~l~~L~l~~c~~l~~l~~~~~~~--l~~L~~L~l~~c~~l~~ 857 (1217)
...... +..+..+. .|+.|.+++|.-...+|.. +.. +++|++|++++|.....
T Consensus 354 ~l~~~~-----------------------p~~l~~l~~~L~~L~Ls~N~l~~~~~~~-~~~~~~~~L~~L~L~~n~l~~~ 409 (768)
T 3rgz_A 354 EFSGEL-----------------------PESLTNLSASLLTLDLSSNNFSGPILPN-LCQNPKNTLQELYLQNNGFTGK 409 (768)
T ss_dssp EEEECC-----------------------CTTHHHHTTTCSEEECCSSEEEEECCTT-TTCSTTCCCCEEECCSSEEEEE
T ss_pred ccCccc-----------------------cHHHHhhhcCCcEEEccCCCcCCCcChh-hhhcccCCccEEECCCCccccc
Confidence 322111 11112222 3444444443322233332 111 45555555555433322
Q ss_pred ccc-cCCCCCccEEEecccCcccccccCCCCCCCCCcccccccCCCCCcccccccceEeccCCCCcccccCCCCCCCccE
Q 039990 858 IAR-EHLPSSLKEIELEYCEIQQCVLDDGENSCASPSVLEKNINNSSSSTYLDLESLSVQSCPSLTRLWSSGRLPVTLKC 936 (1217)
Q Consensus 858 i~~-~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~ 936 (1217)
++. ....++|+.|++++|...+.+|... ..+++|+.|.+++|.....++.....+++|+.
T Consensus 410 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l-------------------~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 470 (768)
T 3rgz_A 410 IPPTLSNCSELVSLHLSFNYLSGTIPSSL-------------------GSLSKLRDLKLWLNMLEGEIPQELMYVKTLET 470 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSEEESCCCGGG-------------------GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred cCHHHhcCCCCCEEECcCCcccCcccHHH-------------------hcCCCCCEEECCCCcccCcCCHHHcCCCCceE
Confidence 222 1223455555555554333222111 11334666666665443344333444557777
Q ss_pred EeecCCCCCcccccccccccCcceEeeccCCCccccccccCCCCcccEEEEcCCCCCccccccCCCCCCcceEEecCCCC
Q 039990 937 IQIEDCSNFKVLTSECQLSVAVEELTIDSCSNIESIAERFHDDACLRSIRLSYCKNLKSLPKGLNNLSHLHRRSIQGCHN 1016 (1217)
Q Consensus 937 L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~l~~c~~ 1016 (1217)
|++++|.....+|..+.++++|+.|++++|.....+|..+..+++|++|+|++|.....+|..+..+++|+.|++++|+.
T Consensus 471 L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 550 (768)
T 3rgz_A 471 LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF 550 (768)
T ss_dssp EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEE
T ss_pred EEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCcc
Confidence 77777776667777777777788888877776667777777777788888887766667777777777888888877765
Q ss_pred CcccCCCCCC-CCcce---------EEEccCcCccc--------------CCCCCCCCCcceEeeccCCCccccCCC-CC
Q 039990 1017 LVSLPEDALP-SNVVD---------VSIEDCDKLKA--------------PLPTGKLSSLQLLTLIECPGIVFFPEE-GL 1071 (1217)
Q Consensus 1017 l~~l~~~~~~-~~L~~---------L~l~~~~~l~~--------------~~~~~~l~~L~~L~l~~c~~l~~~~~~-~~ 1071 (1217)
...+|...+. ..+.. .++.+...... +.....++.+..+++..+..-+.+|.. ..
T Consensus 551 ~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~ 630 (768)
T 3rgz_A 551 NGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDN 630 (768)
T ss_dssp ESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSS
T ss_pred CCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhc
Confidence 5555542111 11111 11111110000 000122333344444433222333333 45
Q ss_pred CCCCCeEEecCCCCCccccccccccCCcccceeeccCCCccccccccccCCCCCCcceEeecCCCCCcccCccccCCccc
Q 039990 1072 STNLTDLEISGDNIYKPLVKWGFDKFSSLRKHCINRCSDAVSFPEVEKGVILPTSLTLIRISDFPKLERLSSKGFHYLLS 1151 (1217)
Q Consensus 1072 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~ 1151 (1217)
+++|++|++++|...+.+|. .++++++|+.|++++|...+.+|. .+..+++|++|++++++--+.+| ..+.++++
T Consensus 631 l~~L~~LdLs~N~l~g~ip~-~l~~l~~L~~L~Ls~N~l~g~ip~---~l~~L~~L~~LdLs~N~l~g~ip-~~l~~l~~ 705 (768)
T 3rgz_A 631 NGSMMFLDMSYNMLSGYIPK-EIGSMPYLFILNLGHNDISGSIPD---EVGDLRGLNILDLSSNKLDGRIP-QAMSALTM 705 (768)
T ss_dssp SBCCCEEECCSSCCBSCCCG-GGGGCTTCCEEECCSSCCCSCCCG---GGGGCTTCCEEECCSSCCEECCC-GGGGGCCC
T ss_pred cccccEEECcCCcccccCCH-HHhccccCCEEeCcCCccCCCCCh---HHhCCCCCCEEECCCCcccCcCC-hHHhCCCC
Confidence 78999999999998888876 689999999999999988888887 56678999999999954444777 88999999
Q ss_pred ccccccccccCcccCCCCCCCCccceEeccCCcchH----HhhcCCCCCCCCcccccceEE
Q 039990 1152 LEQLKVSSCPNFTSFPEAGFPSSLLFLDIQGCPLLE----NKFKKGKGQEWPKIAHIPSVL 1208 (1217)
Q Consensus 1152 L~~L~l~~c~~l~~lp~~~~~~sL~~L~l~~c~~l~----~~~~~~~~~~~~~i~~i~~~~ 1208 (1217)
|++|++++|+..+.+|.++.+.++....+.+||.+. ..|....+.+|++|+|+++++
T Consensus 706 L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~~~~~~~~~ 766 (768)
T 3rgz_A 706 LTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQRSHHHH 766 (768)
T ss_dssp CSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCCCSCC--------------
T ss_pred CCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCcCCCCCccCCCCCCCCccccC
Confidence 999999999888899998777788878888886543 268999999999999999875
No 2
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=3.1e-41 Score=404.34 Aligned_cols=310 Identities=16% Similarity=0.211 Sum_probs=243.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHh--cc-ccCCCCCeEEEEeCCcc--cHHHHH
Q 039990 79 PAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYN--DK-LTDDFKPKAWVCVSDDF--DILRIS 153 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~--~~-~~~~F~~~~wv~~~~~~--~~~~~~ 153 (1217)
+..|||++++++|.++|..... ...++|+|+|||||||||||+++|+ +. ++.+|++++||++++.+ ++.+++
T Consensus 128 ~~~~GR~~~~~~l~~~L~~~~~---~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 204 (549)
T 2a5y_B 128 MTCYIREYHVDRVIKKLDEMCD---LDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLF 204 (549)
T ss_dssp CCSCCCHHHHHHHHHHHHHHTT---SSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHH
T ss_pred CccCCchHHHHHHHHHHhcccC---CCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHH
Confidence 3335999999999999976422 4579999999999999999999997 33 88999999999999985 899999
Q ss_pred HHHHHHhhcCCC-------CCCChhHHHHHHHHHHHhc---------CcCHHHHHHhhcccCCCCCCcEEEEEcCchHHH
Q 039990 154 KAILESITRSSC-------GLTDLNSVQLKLKEAVFKK---------NKSYELWQALKSPFMAGAPGSRIIVTTRSMDVA 217 (1217)
Q Consensus 154 ~~i~~~l~~~~~-------~~~~~~~~~~~l~~~l~~~---------~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~v~ 217 (1217)
+.|+.+++.... ...+.+.+...+++.+.++ +|+.+.+ .++. .+||+||||||++.++
T Consensus 205 ~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-----~~~~-~~gs~ilvTTR~~~v~ 278 (549)
T 2a5y_B 205 TDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-----RWAQ-ELRLRCLVTTRDVEIS 278 (549)
T ss_dssp HHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-----HHHH-HTTCEEEEEESBGGGG
T ss_pred HHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-----cccc-cCCCEEEEEcCCHHHH
Confidence 999999986532 1223456778888888773 3444433 1111 2799999999999999
Q ss_pred HhhC-CCceEeccCCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhccCCchhHHHHHHHhhcCCChhHHHHHHhh
Q 039990 218 LKMG-SGKNYELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGLPLAARALGGLLRSKQRVDEWRAILNS 296 (1217)
Q Consensus 218 ~~~~-~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~~~~~ 296 (1217)
..++ ...+|+|++|+.+|||+||.+++++.. ..+...+++++|+++|+|+||||+++|+.++.+ .. +|.+.+..
T Consensus 279 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~---~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~w-~~~~~l~~ 353 (549)
T 2a5y_B 279 NAASQTCEFIEVTSLEIDECYDFLEAYGMPMP---VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-TF-EKMAQLNN 353 (549)
T ss_dssp GGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-SH-HHHHHHHH
T ss_pred HHcCCCCeEEECCCCCHHHHHHHHHHHhcCCC---CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-hH-HHHHHhHH
Confidence 8775 336899999999999999999987642 246678899999999999999999999999876 22 33344443
Q ss_pred ccCCCCCCCCchHHHHHhhcCCChhHHHHHH-----------HhhcCCCCcccChHHHHHHHHHh--CCcccccccccHH
Q 039990 297 KIWDLEDEIEIPSVLKLSYHHLPSHLKRCFA-----------YCAILPKDYEFQEEELVLLWIAE--GFIQQSKYSKQLE 363 (1217)
Q Consensus 297 ~~~~~~~~~~i~~~l~~sy~~L~~~~k~~f~-----------~~~~fp~~~~i~~~~li~~w~~~--g~i~~~~~~~~~~ 363 (1217)
..+.. ...++..++.+||+.||++.|.||+ |||+||+++.|+ ++.|+|+ ||+.........+
T Consensus 354 ~l~~~-~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~ 428 (549)
T 2a5y_B 354 KLESR-GLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDD 428 (549)
T ss_dssp HHHHH-CSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTH
T ss_pred Hhhcc-cHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHH
Confidence 32221 2336888999999999999999999 999999999999 8899999 9998754456677
Q ss_pred HHHHHHHHHHHhccCCcccCC-CCCeEEEchhHHHHHHHHhcCceE
Q 039990 364 DWGSEYFHDLLSRSMFQKSSN-NESKFVMHDLVHDLAQWASGDTCF 408 (1217)
Q Consensus 364 ~~~~~~l~~L~~~sl~~~~~~-~~~~~~mh~lv~~~~~~~~~~~~~ 408 (1217)
+.++ |+++|+++||++.... ...+|+|||+||+||+++++++++
T Consensus 429 ~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 429 EVAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp HHHH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred HHHH-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHHH
Confidence 8777 9999999999998643 356899999999999999988765
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=6.5e-40 Score=412.64 Aligned_cols=607 Identities=16% Similarity=0.092 Sum_probs=341.5
Q ss_pred CcceEEEcCCCCcccccccccccccChhhhcccccCcEEecccccccccccccccccccccEEeecCCccccccCC--CC
Q 039990 482 KKLRVLSLEKDNIAEVPISIGCLKCLPEAITSLFNLEILILSYCWCLLKLPSSIGNLVNLHHLDIEGADRLCELPL--GM 559 (1217)
Q Consensus 482 ~~Lr~L~L~~~~i~~lp~~i~~L~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~--~i 559 (1217)
..++.|+|+++.+..... .+|.++.+|++|++++++.+ .+..+|..|+++++|++|++++|.....+|. .+
T Consensus 50 ~~v~~L~L~~~~l~g~~~------~l~~~l~~L~~L~~l~~~~~-~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l 122 (768)
T 3rgz_A 50 DKVTSIDLSSKPLNVGFS------AVSSSLLSLTGLESLFLSNS-HINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSL 122 (768)
T ss_dssp TEEEEEECTTSCCCEEHH------HHHHHTTTCTTCCEEECTTS-CEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGG
T ss_pred CcEEEEECCCCCcCCccC------ccChhHhccCcccccCCcCC-CcCCCchhhccCCCCCEEECCCCcCCCcCCChHHH
Confidence 478999999998765210 25678999999999999998 6777889999999999999999944446787 89
Q ss_pred ccCcccccccccccccChhhhHHHHhcCCCCCCeEEEEecCCCCchhhHHHHhcccCCCCCccEEEEEeeCCCCCCCCcC
Q 039990 560 KELKCLRTLTDFINVIDSQEANEAMLRGKKDLEVLKLVWSGGPVDELREKNILDMLKPHCNIKRLEIISYGSTRFPSWVG 639 (1217)
Q Consensus 560 ~~L~~L~~L~~~~n~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~ 639 (1217)
+++++|++|++..|....... ...+.++++|++|+++.+........ ....+..+++|+.|+++++........
T Consensus 123 ~~l~~L~~L~Ls~n~l~~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~---~~~~~~~l~~L~~L~Ls~n~l~~~~~~-- 196 (768)
T 3rgz_A 123 GSCSGLKFLNVSSNTLDFPGK-VSGGLKLNSLEVLDLSANSISGANVV---GWVLSDGCGELKHLAISGNKISGDVDV-- 196 (768)
T ss_dssp GGCTTCCEEECCSSEEECCSS-CCSCCCCTTCSEEECCSSCCEEETHH---HHHHTTCCTTCCEEECCSSEEESCCBC--
T ss_pred hCCCCCCEEECcCCccCCcCC-HHHhccCCCCCEEECCCCccCCcCCh---hhhhhccCCCCCEEECCCCcccccCCc--
Confidence 999999999988775542211 11136778889888876553222111 111245677888888887765433322
Q ss_pred CCCcCcccEEEEecCCCCCCCCCCCCcCCCCeeEEcCCCCceEeCccccCCCCcccCcccceeeccccccccccccCCcc
Q 039990 640 DPSFSNVAVLKLENCDRCTSLPSLGQLCSLKDLTIVGMSALKSVGSEIYGEGCSKPFRSLQTLYFEDLQEWEHWEPNREN 719 (1217)
Q Consensus 640 ~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 719 (1217)
..+++|+.|++++|.....+|.++++++|++|+++++.-...++..+. .+++|+.|+++++........
T Consensus 197 -~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~------~l~~L~~L~Ls~n~l~~~~~~---- 265 (768)
T 3rgz_A 197 -SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAIS------TCTELKLLNISSNQFVGPIPP---- 265 (768)
T ss_dssp -TTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTT------TCSSCCEEECCSSCCEESCCC----
T ss_pred -ccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHh------cCCCCCEEECCCCcccCccCc----
Confidence 247788888888877666666677888888888876542222222222 266666666666543211100
Q ss_pred ccccccCccccEEeecCCCCccCCCCCC----CCCccEEEEccCCCccccCCCCCcccEEEEccCCCccccCCCCCCCcc
Q 039990 720 DEHVQAFSHLRKLSIKRCPKLSGRLPNH----LPSLEEIVIAGCMHLAVSLPSLPALCTMEIDGCKRLVCDGPSESKSLN 795 (1217)
Q Consensus 720 ~~~~~~~~~L~~L~l~~c~~L~~~~p~~----l~~L~~L~l~~c~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~ 795 (1217)
. .+++|++|++++| .+.+.+|.. +++|+.|++++|..... .......+++|+
T Consensus 266 ~----~l~~L~~L~L~~n-~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~-------------------~p~~~~~l~~L~ 321 (768)
T 3rgz_A 266 L----PLKSLQYLSLAEN-KFTGEIPDFLSGACDTLTGLDLSGNHFYGA-------------------VPPFFGSCSLLE 321 (768)
T ss_dssp C----CCTTCCEEECCSS-EEEESCCCCSCTTCTTCSEEECCSSEEEEC-------------------CCGGGGGCTTCC
T ss_pred c----ccCCCCEEECcCC-ccCCccCHHHHhhcCcCCEEECcCCcCCCc-------------------cchHHhcCCCcc
Confidence 0 4566666666665 333344432 24555555555432110 001112233444
Q ss_pred ceeeccccccccccccccccccceeeeccccCCCccccccccccCCC-cccEEEEeccCCcccccccC-C--CCCccEEE
Q 039990 796 EMALCNISKFENWSMENLVRFGFYSVDTSKDCNALTSLTDGMIHNNV-RLEVLRIIGCHSLKSIAREH-L--PSSLKEIE 871 (1217)
Q Consensus 796 ~L~l~~~~~l~~~~~~~~~~~~~l~~L~l~~c~~l~~l~~~~~~~l~-~L~~L~l~~c~~l~~i~~~~-~--~~~L~~L~ 871 (1217)
+|++.++.-...++...+..+++|+.|.+++|.-...+|.. +..++ +|+.|++++|.....++... . .++|++|+
T Consensus 322 ~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~ 400 (768)
T 3rgz_A 322 SLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES-LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 400 (768)
T ss_dssp EEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTT-HHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEE
T ss_pred EEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHH-HHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEE
Confidence 44444332111222122333445555555554333344443 33333 55555555543322222211 1 23455555
Q ss_pred ecccCcccccccCCCCCCCCCcccccccCCCCCcccccccceEeccCCCCcccccCCCCCCCccEEeecCCCCCcccccc
Q 039990 872 LEYCEIQQCVLDDGENSCASPSVLEKNINNSSSSTYLDLESLSVQSCPSLTRLWSSGRLPVTLKCIQIEDCSNFKVLTSE 951 (1217)
Q Consensus 872 l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~ 951 (1217)
+++|...+.+| .....+++|+.|++++|.....+|..
T Consensus 401 L~~n~l~~~~p-------------------------------------------~~l~~l~~L~~L~Ls~N~l~~~~p~~ 437 (768)
T 3rgz_A 401 LQNNGFTGKIP-------------------------------------------PTLSNCSELVSLHLSFNYLSGTIPSS 437 (768)
T ss_dssp CCSSEEEEECC-------------------------------------------GGGGGCTTCCEEECCSSEEESCCCGG
T ss_pred CCCCccccccC-------------------------------------------HHHhcCCCCCEEECcCCcccCcccHH
Confidence 55554333222 22223334445555444433344444
Q ss_pred cccccCcceEeeccCCCccccccccCCCCcccEEEEcCCCCCccccccCCCCCCcceEEecCCCCCcccCCC-CCCCCcc
Q 039990 952 CQLSVAVEELTIDSCSNIESIAERFHDDACLRSIRLSYCKNLKSLPKGLNNLSHLHRRSIQGCHNLVSLPED-ALPSNVV 1030 (1217)
Q Consensus 952 ~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~ 1030 (1217)
+..+++|+.|++++|.....+|..+..+++|++|++++|.....+|..+..+++|+.|++++|.....+|.. ...++|+
T Consensus 438 l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~ 517 (768)
T 3rgz_A 438 LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLA 517 (768)
T ss_dssp GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC
T ss_pred HhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCC
Confidence 444455555555554444444444444455555555554444344444444555555555544332233321 1123455
Q ss_pred eEEEccCcCccc-CCCCCCCCCcceEeeccCCCccccCCC-CC-------------------------------------
Q 039990 1031 DVSIEDCDKLKA-PLPTGKLSSLQLLTLIECPGIVFFPEE-GL------------------------------------- 1071 (1217)
Q Consensus 1031 ~L~l~~~~~l~~-~~~~~~l~~L~~L~l~~c~~l~~~~~~-~~------------------------------------- 1071 (1217)
.|++++|..... |..+..+++|++|++++|+..+.+|.. ..
T Consensus 518 ~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (768)
T 3rgz_A 518 ILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQ 597 (768)
T ss_dssp EEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECT
T ss_pred EEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccc
Confidence 555555443322 112244555555555554433333322 00
Q ss_pred ---------CCCCCeEEecCCCCCccccccccccCCcccceeeccCCCccccccccccCCCCCCcceEeecCCCCCcccC
Q 039990 1072 ---------STNLTDLEISGDNIYKPLVKWGFDKFSSLRKHCINRCSDAVSFPEVEKGVILPTSLTLIRISDFPKLERLS 1142 (1217)
Q Consensus 1072 ---------~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~ 1142 (1217)
++.+..+++..+.....++. .+..+++|+.|++++|...+.+|. .+..+++|+.|+++++.--..+|
T Consensus 598 ~~~~~~~~~l~~~~~~~l~~~~~~g~~~~-~~~~l~~L~~LdLs~N~l~g~ip~---~l~~l~~L~~L~Ls~N~l~g~ip 673 (768)
T 3rgz_A 598 GIRSEQLNRLSTRNPCNITSRVYGGHTSP-TFDNNGSMMFLDMSYNMLSGYIPK---EIGSMPYLFILNLGHNDISGSIP 673 (768)
T ss_dssp TCCGGGGGGGGGTCCSCTTSCEEEEECCC-SCSSSBCCCEEECCSSCCBSCCCG---GGGGCTTCCEEECCSSCCCSCCC
T ss_pred cccchhhhccccccccccccceecccCch-hhhccccccEEECcCCcccccCCH---HHhccccCCEEeCcCCccCCCCC
Confidence 11122222233322233333 567889999999999988878887 55678999999999954444777
Q ss_pred ccccCCcccccccccccccCcccCCCC-CCCCccceEeccCCcc
Q 039990 1143 SKGFHYLLSLEQLKVSSCPNFTSFPEA-GFPSSLLFLDIQGCPL 1185 (1217)
Q Consensus 1143 ~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~~sL~~L~l~~c~~ 1185 (1217)
..++++++|+.|++++|...+.+|.. +.+++|+.|++++|+.
T Consensus 674 -~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l 716 (768)
T 3rgz_A 674 -DEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 716 (768)
T ss_dssp -GGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEE
T ss_pred -hHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcc
Confidence 88999999999999999766788875 6678999999999964
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3.4e-34 Score=358.40 Aligned_cols=223 Identities=14% Similarity=0.094 Sum_probs=105.1
Q ss_pred CccEEeecCCCCCcccccccccccCcceEeeccCCCccccc-cccCCCCcccEEEEcCCCCCccccccCCCCCCcceEEe
Q 039990 933 TLKCIQIEDCSNFKVLTSECQLSVAVEELTIDSCSNIESIA-ERFHDDACLRSIRLSYCKNLKSLPKGLNNLSHLHRRSI 1011 (1217)
Q Consensus 933 ~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~l 1011 (1217)
+|+.|++++|......+..+..+++|+.|++++|.....++ ..+..+++|++|++++|......+..+..+++|+.|++
T Consensus 382 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l 461 (680)
T 1ziw_A 382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLML 461 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEEC
T ss_pred cCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchh
Confidence 45555555555444445555555666666666654443343 34444566666666665433333445555666666666
Q ss_pred cCCCCC--cccCCC-CCCCCcceEEEccCcCcccCC-CCCCCCCcceEeeccCCCccccCC----------CCCCCCCCe
Q 039990 1012 QGCHNL--VSLPED-ALPSNVVDVSIEDCDKLKAPL-PTGKLSSLQLLTLIECPGIVFFPE----------EGLSTNLTD 1077 (1217)
Q Consensus 1012 ~~c~~l--~~l~~~-~~~~~L~~L~l~~~~~l~~~~-~~~~l~~L~~L~l~~c~~l~~~~~----------~~~~~~L~~ 1077 (1217)
++|..- ..+|.. ...++|+.|++++|.....+. .+..+++|++|++++|.. ..++. ...+++|++
T Consensus 462 ~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~~~~~~~~~l~~L~~ 540 (680)
T 1ziw_A 462 RRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNL-ARLWKHANPGGPIYFLKGLSHLHI 540 (680)
T ss_dssp TTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-GGGGSTTSTTSCCCTTTTCTTCCE
T ss_pred ccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCc-cccchhhccCCcchhhcCCCCCCE
Confidence 654311 112211 111334444444443222211 134555666666655432 22111 122445555
Q ss_pred EEecCCCCCccccccccccCCcccceeeccCCCccccccccccCCCCCCcceEeecCCCCCcccCccccC-Ccccccccc
Q 039990 1078 LEISGDNIYKPLVKWGFDKFSSLRKHCINRCSDAVSFPEVEKGVILPTSLTLIRISDFPKLERLSSKGFH-YLLSLEQLK 1156 (1217)
Q Consensus 1078 L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~-~l~~L~~L~ 1156 (1217)
|++++|... .++...|.++++|+.|++++| .++.+|. ..|..+++|+.|++++ |.++.+++..+. .+++|+.|+
T Consensus 541 L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~--~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~~~~~L~~l~ 615 (680)
T 1ziw_A 541 LNLESNGFD-EIPVEVFKDLFELKIIDLGLN-NLNTLPA--SVFNNQVSLKSLNLQK-NLITSVEKKVFGPAFRNLTELD 615 (680)
T ss_dssp EECCSSCCC-CCCTTTTTTCTTCCEEECCSS-CCCCCCT--TTTTTCTTCCEEECTT-SCCCBCCHHHHHHHHTTCSEEE
T ss_pred EECCCCCCC-CCCHHHcccccCcceeECCCC-CCCcCCH--hHhCCCCCCCEEECCC-CcCCccChhHhcccccccCEEE
Confidence 555555433 233334555555555555553 3334443 2334445555555555 455555544343 455555555
Q ss_pred ccccc
Q 039990 1157 VSSCP 1161 (1217)
Q Consensus 1157 l~~c~ 1161 (1217)
+++||
T Consensus 616 l~~N~ 620 (680)
T 1ziw_A 616 MRFNP 620 (680)
T ss_dssp CTTCC
T ss_pred ccCCC
Confidence 55554
No 5
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.9e-33 Score=350.02 Aligned_cols=272 Identities=15% Similarity=0.120 Sum_probs=201.9
Q ss_pred ccccceEeccCCCCcccccCCCCCCCccEEeecCCCC-Cccccc-cccc--ccCcceEeeccCCCccccccccCCCCccc
Q 039990 908 LDLESLSVQSCPSLTRLWSSGRLPVTLKCIQIEDCSN-FKVLTS-ECQL--SVAVEELTIDSCSNIESIAERFHDDACLR 983 (1217)
Q Consensus 908 ~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~-l~~~~~-~~~~--l~~L~~L~l~~~~~l~~l~~~~~~l~~L~ 983 (1217)
++|+.|+++++..-...+......++|+.|++++|.. ...++. .+.. .++|+.|++++|......+..+..+++|+
T Consensus 329 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 408 (680)
T 1ziw_A 329 KCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLE 408 (680)
T ss_dssp TTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCC
Confidence 3455555555432221112233445788888888753 222322 2222 36899999999877666677888899999
Q ss_pred EEEEcCCCCCcccc-ccCCCCCCcceEEecCCCCCcccCCCCC--CCCcceEEEccCcCc---ccCCCCCCCCCcceEee
Q 039990 984 SIRLSYCKNLKSLP-KGLNNLSHLHRRSIQGCHNLVSLPEDAL--PSNVVDVSIEDCDKL---KAPLPTGKLSSLQLLTL 1057 (1217)
Q Consensus 984 ~L~L~~c~~l~~l~-~~l~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~~~~l---~~~~~~~~l~~L~~L~l 1057 (1217)
.|++++|.....+| ..+..+++|+.|++++|. ++.++...+ .++|+.|++++|... ..+..+..+++|++|++
T Consensus 409 ~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~L 487 (680)
T 1ziw_A 409 VLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK-YLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDL 487 (680)
T ss_dssp EEECCSSCCEEECCSGGGTTCTTCCEEECCSCS-EEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEEC
T ss_pred EEeCCCCcCccccCcccccCcccccEEecCCCC-cceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEEC
Confidence 99999987666665 578899999999999976 555554333 479999999998753 22445689999999999
Q ss_pred ccCCCccccCCC--CCCCCCCeEEecCCCCCccc-------cccccccCCcccceeeccCCCccccccccccCCCCCCcc
Q 039990 1058 IECPGIVFFPEE--GLSTNLTDLEISGDNIYKPL-------VKWGFDKFSSLRKHCINRCSDAVSFPEVEKGVILPTSLT 1128 (1217)
Q Consensus 1058 ~~c~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~-------~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~ 1128 (1217)
++|. +..++.. ..+++|++|++++|...... +...+..+++|++|++++|. +..+|. ..|..+++|+
T Consensus 488 s~N~-l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~--~~~~~l~~L~ 563 (680)
T 1ziw_A 488 SNNN-IANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNG-FDEIPV--EVFKDLFELK 563 (680)
T ss_dssp CSSC-CCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSC-CCCCCT--TTTTTCTTCC
T ss_pred CCCC-CCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCC-CCCCCH--HHcccccCcc
Confidence 9975 4455543 56899999999999876431 11237889999999999974 557775 4577889999
Q ss_pred eEeecCCCCCcccCccccCCcccccccccccccCcccCCCCC---CCCccceEeccCCcch
Q 039990 1129 LIRISDFPKLERLSSKGFHYLLSLEQLKVSSCPNFTSFPEAG---FPSSLLFLDIQGCPLL 1186 (1217)
Q Consensus 1129 ~L~l~~c~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~lp~~~---~~~sL~~L~l~~c~~l 1186 (1217)
.|++++ |+++.+|...+.++++|+.|++++| .++.++... .+++|+.|++++||-.
T Consensus 564 ~L~Ls~-N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~l~~N~~~ 622 (680)
T 1ziw_A 564 IIDLGL-NNLNTLPASVFNNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELDMRFNPFD 622 (680)
T ss_dssp EEECCS-SCCCCCCTTTTTTCTTCCEEECTTS-CCCBCCHHHHHHHHTTCSEEECTTCCCC
T ss_pred eeECCC-CCCCcCCHhHhCCCCCCCEEECCCC-cCCccChhHhcccccccCEEEccCCCcc
Confidence 999998 8999999777899999999999999 788887642 4689999999998743
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.8e-32 Score=338.10 Aligned_cols=245 Identities=16% Similarity=0.106 Sum_probs=129.6
Q ss_pred CccEEeecCCCCCcccccccccccCcceEeeccCCCccccccc-cCCCCcccEEEEcCCCCCccc--cccCCCCCCcceE
Q 039990 933 TLKCIQIEDCSNFKVLTSECQLSVAVEELTIDSCSNIESIAER-FHDDACLRSIRLSYCKNLKSL--PKGLNNLSHLHRR 1009 (1217)
Q Consensus 933 ~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~-~~~l~~L~~L~L~~c~~l~~l--~~~l~~l~~L~~L 1009 (1217)
+|+.|++++|......+..+..+++|++|++++|.....++.. +..+++|++|++++|...... +..+..+++|++|
T Consensus 302 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L 381 (606)
T 3t6q_A 302 TLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSL 381 (606)
T ss_dssp TCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEE
T ss_pred cCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEE
Confidence 4444444444433333444444555555555554433333322 334555555555554322221 3344555555555
Q ss_pred EecCCCCCcccCCCCC--CCCcceEEEccCcCcccC--CCCCCCCCcceEeeccCCCccccCCC-CCCCCCCeEEecCCC
Q 039990 1010 SIQGCHNLVSLPEDAL--PSNVVDVSIEDCDKLKAP--LPTGKLSSLQLLTLIECPGIVFFPEE-GLSTNLTDLEISGDN 1084 (1217)
Q Consensus 1010 ~l~~c~~l~~l~~~~~--~~~L~~L~l~~~~~l~~~--~~~~~l~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~~~ 1084 (1217)
++++|. ++.++...+ .++|+.|++++|...... ..+..+++|++|++++|......+.. ..+++|++|++++|.
T Consensus 382 ~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 460 (606)
T 3t6q_A 382 NLSYNE-PLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNH 460 (606)
T ss_dssp ECCSCS-CEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCB
T ss_pred ECCCCc-CCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCC
Confidence 555543 222222111 245555555555433321 12356677777777766543333332 446677777777776
Q ss_pred CCccc-c-ccccccCCcccceeeccCCCccccccccccCCCCCCcceEeecCCCCCcccCccccCCcccccccccccccC
Q 039990 1085 IYKPL-V-KWGFDKFSSLRKHCINRCSDAVSFPEVEKGVILPTSLTLIRISDFPKLERLSSKGFHYLLSLEQLKVSSCPN 1162 (1217)
Q Consensus 1085 ~~~~~-~-~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~L~~L~l~~c~~ 1162 (1217)
..+.. + ...+..+++|++|++++|......|. .+..+++|+.|++++ +++..+++..+.++++| +|++++| .
T Consensus 461 l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~Ls~-N~l~~~~~~~l~~l~~L-~L~L~~N-~ 534 (606)
T 3t6q_A 461 FPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQH---AFTSLKMMNHVDLSH-NRLTSSSIEALSHLKGI-YLNLASN-H 534 (606)
T ss_dssp CGGGEECSSCGGGGCTTCCEEECTTSCCCEECTT---TTTTCTTCCEEECCS-SCCCGGGGGGGTTCCSC-EEECCSS-C
T ss_pred CCccccccchhhccCCCccEEECCCCccCccChh---hhccccCCCEEECCC-CccCcCChhHhCccccc-EEECcCC-c
Confidence 65421 1 12466777777777777654433333 455667777777777 45655555677777777 7777777 4
Q ss_pred cccCCCC--CCCCccceEeccCCc
Q 039990 1163 FTSFPEA--GFPSSLLFLDIQGCP 1184 (1217)
Q Consensus 1163 l~~lp~~--~~~~sL~~L~l~~c~ 1184 (1217)
++.++.. ..+++|+.|++++||
T Consensus 535 l~~~~~~~~~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 535 ISIILPSLLPILSQQRTINLRQNP 558 (606)
T ss_dssp CCCCCGGGHHHHHTSSEEECTTCC
T ss_pred ccccCHhhcccCCCCCEEeCCCCC
Confidence 5555433 235677777777765
No 7
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=4.2e-34 Score=340.77 Aligned_cols=275 Identities=15% Similarity=0.205 Sum_probs=217.4
Q ss_pred cccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhcc-ccCCCCC-eEEEEeCCcccHHHHHHHHHH
Q 039990 81 VYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDK-LTDDFKP-KAWVCVSDDFDILRISKAILE 158 (1217)
Q Consensus 81 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~-~~~~F~~-~~wv~~~~~~~~~~~~~~i~~ 158 (1217)
.|||++++++|.++|... +..++|+|+||||+||||||+++|++. ++.+|+. ++||++++.++...++..|++
T Consensus 130 ~VGRe~eLeeL~elL~~~-----d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~ 204 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLEL-----RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHC-----CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhcc-----CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 499999999999999864 235899999999999999999999865 7888986 899999999998888888887
Q ss_pred HhhcCC---CCC--------CChhHHHHHHHHHHH---hc--------CcCHHHHHHhhcccCCCCCCcEEEEEcCchHH
Q 039990 159 SITRSS---CGL--------TDLNSVQLKLKEAVF---KK--------NKSYELWQALKSPFMAGAPGSRIIVTTRSMDV 216 (1217)
Q Consensus 159 ~l~~~~---~~~--------~~~~~~~~~l~~~l~---~~--------~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~v 216 (1217)
.++... ... .+.+.+...+++.+. ++ +++.+.|+.+ + +||+||||||++.+
T Consensus 205 lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f----~---pGSRILVTTRd~~V 277 (1221)
T 1vt4_I 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF----N---LSCKILLTTRFKQV 277 (1221)
T ss_dssp HHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHH----H---SSCCEEEECSCSHH
T ss_pred HHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhh----C---CCeEEEEeccChHH
Confidence 654321 100 123445566666662 23 4556666654 2 69999999999999
Q ss_pred HHhhCCCceEecc------CCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhccCCchhHHHHHHHhhcCC-ChhH
Q 039990 217 ALKMGSGKNYELK------HLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGLPLAARALGGLLRSKQ-RVDE 289 (1217)
Q Consensus 217 ~~~~~~~~~~~l~------~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~-~~~~ 289 (1217)
+..+.....++++ +|+.+|||+||.+.. +.. ..++..+| |+|+||||+++|+.|+.+. ..++
T Consensus 278 a~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~-------~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~ee 346 (1221)
T 1vt4_I 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCR-------PQDLPREV---LTTNPRRLSIIAESIRDGLATWDN 346 (1221)
T ss_dssp HHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCC-------TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHH
T ss_pred HHhcCCCeEEEecCccccCCcCHHHHHHHHHHHc-CCC-------HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHH
Confidence 8655444466777 999999999999984 221 12344444 9999999999999999885 4778
Q ss_pred HHHHHhhccCCCCCCCCchHHHHHhhcCCChhH-HHHHHHhhcCCCCcccChHHHHHHHHHhCCcccccccccHHHHHHH
Q 039990 290 WRAILNSKIWDLEDEIEIPSVLKLSYHHLPSHL-KRCFAYCAILPKDYEFQEEELVLLWIAEGFIQQSKYSKQLEDWGSE 368 (1217)
Q Consensus 290 w~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~-k~~f~~~~~fp~~~~i~~~~li~~w~~~g~i~~~~~~~~~~~~~~~ 368 (1217)
|+.. ....+..+|++||+.||++. |+||++||+||+++.|+++.++.+|+++| ++.+++
T Consensus 347 W~~~---------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG-----------eedAe~ 406 (1221)
T 1vt4_I 347 WKHV---------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI-----------KSDVMV 406 (1221)
T ss_dssp HHHC---------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC-----------SHHHHH
T ss_pred HhcC---------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC-----------HHHHHH
Confidence 8753 12368999999999999999 99999999999999999999999998876 134788
Q ss_pred HHHHHHhccCCcccCCCCCeEEEchhHHHHH
Q 039990 369 YFHDLLSRSMFQKSSNNESKFVMHDLVHDLA 399 (1217)
Q Consensus 369 ~l~~L~~~sl~~~~~~~~~~~~mh~lv~~~~ 399 (1217)
++++|+++||++.. ....+|+|||++++++
T Consensus 407 ~L~eLvdRSLLq~d-~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 407 VVNKLHKYSLVEKQ-PKESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHHHTSSSSSBC-SSSSEEBCCCHHHHHH
T ss_pred HHHHHHhhCCEEEe-CCCCEEEehHHHHHHh
Confidence 99999999999985 2356899999999855
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3.4e-32 Score=335.59 Aligned_cols=80 Identities=18% Similarity=0.250 Sum_probs=58.3
Q ss_pred CcceEEEcCCCCcccccccccccccChhhhcccccCcEEecccccccccc-cccccccccccEEeecCCcccccc-CCCC
Q 039990 482 KKLRVLSLEKDNIAEVPISIGCLKCLPEAITSLFNLEILILSYCWCLLKL-PSSIGNLVNLHHLDIEGADRLCEL-PLGM 559 (1217)
Q Consensus 482 ~~Lr~L~L~~~~i~~lp~~i~~L~~lp~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~l-p~~i 559 (1217)
+.|++|+|++|.++.++ |.+|.++++|++|++++| .+..+ |..|+++++|++|++++| .+..+ |..|
T Consensus 32 ~~l~~L~Ls~n~l~~~~---------~~~~~~l~~L~~L~Ls~n-~l~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~p~~~ 100 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILK---------SYSFSNFSELQWLDLSRC-EIETIEDKAWHGLHHLSNLILTGN-PIQSFSPGSF 100 (606)
T ss_dssp TTCCEEECTTSCCCEEC---------TTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTC-CCCCCCTTSS
T ss_pred CCcCEEECCCCCcCEeC---------hhhccCCccCcEEeCCCC-cccccCHHHhhchhhcCEeECCCC-cccccChhhc
Confidence 57788888888887765 456778888888888887 56665 455788888888888888 56666 5667
Q ss_pred ccCcccccccccc
Q 039990 560 KELKCLRTLTDFI 572 (1217)
Q Consensus 560 ~~L~~L~~L~~~~ 572 (1217)
+++++|++|++..
T Consensus 101 ~~l~~L~~L~L~~ 113 (606)
T 3vq2_A 101 SGLTSLENLVAVE 113 (606)
T ss_dssp TTCTTCCEEECTT
T ss_pred CCcccCCEEEccC
Confidence 7777777666544
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=4.3e-32 Score=334.62 Aligned_cols=203 Identities=12% Similarity=0.032 Sum_probs=111.2
Q ss_pred CccEEeecCCCCCccc--ccccccccCcceEeeccCCCccccccccCCCCcccEEEEcCCCCCccccc-cCCCCCCcceE
Q 039990 933 TLKCIQIEDCSNFKVL--TSECQLSVAVEELTIDSCSNIESIAERFHDDACLRSIRLSYCKNLKSLPK-GLNNLSHLHRR 1009 (1217)
Q Consensus 933 ~L~~L~l~~~~~l~~~--~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~L~~c~~l~~l~~-~l~~l~~L~~L 1009 (1217)
+|+.|++++|...... +..+..+++|++|++++|......+..+..+++|++|++++|......+. .+..+++|+.|
T Consensus 351 ~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 430 (606)
T 3t6q_A 351 NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVL 430 (606)
T ss_dssp TCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEE
T ss_pred cCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEE
Confidence 4455555544433322 33444555555555555443333344444455555555555443322222 24455555555
Q ss_pred EecCCCCCcccCCCCCCCCcceEEEccCcCcccCCCCCCCCCcceEeeccCCCcc-ccCC---CCCCCCCCeEEecCCCC
Q 039990 1010 SIQGCHNLVSLPEDALPSNVVDVSIEDCDKLKAPLPTGKLSSLQLLTLIECPGIV-FFPE---EGLSTNLTDLEISGDNI 1085 (1217)
Q Consensus 1010 ~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~c~~l~-~~~~---~~~~~~L~~L~l~~~~~ 1085 (1217)
++++|. ++..+. ..+..+++|++|++++|.... .++. ...+++|++|++++|..
T Consensus 431 ~l~~n~-l~~~~~---------------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l 488 (606)
T 3t6q_A 431 NLSHSL-LDISSE---------------------QLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDL 488 (606)
T ss_dssp ECTTCC-CBTTCT---------------------TTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCC
T ss_pred ECCCCc-cCCcCH---------------------HHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCcc
Confidence 555543 222211 122455666666666654322 1111 13356677777777665
Q ss_pred CccccccccccCCcccceeeccCCCccccccccccCCCCCCcceEeecCCCCCcccCccccCCcccccccccccccCc
Q 039990 1086 YKPLVKWGFDKFSSLRKHCINRCSDAVSFPEVEKGVILPTSLTLIRISDFPKLERLSSKGFHYLLSLEQLKVSSCPNF 1163 (1217)
Q Consensus 1086 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~L~~L~l~~c~~l 1163 (1217)
....+. .+..+++|++|++++|......|. .+..+++| .|++++ |.+..+++..+..+++|+.|++++|+..
T Consensus 489 ~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~---~l~~l~~L-~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 560 (606)
T 3t6q_A 489 SSIDQH-AFTSLKMMNHVDLSHNRLTSSSIE---ALSHLKGI-YLNLAS-NHISIILPSLLPILSQQRTINLRQNPLD 560 (606)
T ss_dssp CEECTT-TTTTCTTCCEEECCSSCCCGGGGG---GGTTCCSC-EEECCS-SCCCCCCGGGHHHHHTSSEEECTTCCEE
T ss_pred CccChh-hhccccCCCEEECCCCccCcCChh---HhCccccc-EEECcC-CcccccCHhhcccCCCCCEEeCCCCCcc
Confidence 544333 567778888888888755444443 55567777 888888 5777777677788888888888888543
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.7e-32 Score=336.47 Aligned_cols=181 Identities=18% Similarity=0.144 Sum_probs=121.8
Q ss_pred CccceEccccccccccccccchhhhhhhcCCCCcceEEEcCCCCcccccccccccccChhhhcccccCcEEecccccccc
Q 039990 450 ENLRTFLPIFMEDFFISFCISPMVLSDLLPKCKKLRVLSLEKDNIAEVPISIGCLKCLPEAITSLFNLEILILSYCWCLL 529 (1217)
Q Consensus 450 ~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~lp~~i~~L~~L~~L~L~~~~~l~ 529 (1217)
+++|+|.+.++.. ..+++..|.++++|++|+|++|.++.++ |.+|+++++|++|+|++| .+.
T Consensus 32 ~~l~~L~Ls~n~l--------~~~~~~~~~~l~~L~~L~Ls~n~l~~i~---------~~~~~~l~~L~~L~Ls~n-~l~ 93 (606)
T 3vq2_A 32 SSTKNIDLSFNPL--------KILKSYSFSNFSELQWLDLSRCEIETIE---------DKAWHGLHHLSNLILTGN-PIQ 93 (606)
T ss_dssp TTCCEEECTTSCC--------CEECTTTTTTCTTCCEEECTTCCCCEEC---------TTTTTTCTTCCEEECTTC-CCC
T ss_pred CCcCEEECCCCCc--------CEeChhhccCCccCcEEeCCCCcccccC---------HHHhhchhhcCEeECCCC-ccc
Confidence 6788887766542 3455667889999999999999998875 567899999999999998 566
Q ss_pred cc-cccccccccccEEeecCCccccccC-CCCccCcccccccccccccChhhhHHHHhcCCCCCCeEEEEecCCCCchhh
Q 039990 530 KL-PSSIGNLVNLHHLDIEGADRLCELP-LGMKELKCLRTLTDFINVIDSQEANEAMLRGKKDLEVLKLVWSGGPVDELR 607 (1217)
Q Consensus 530 ~l-p~~i~~L~~L~~L~l~~~~~l~~lp-~~i~~L~~L~~L~~~~n~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 607 (1217)
.+ |..|+++++|++|++++| .+..+| ..++++++|++|++..|...... .+..+.++++|+.|+++++........
T Consensus 94 ~~~p~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-lp~~~~~l~~L~~L~Ls~n~l~~~~~~ 171 (606)
T 3vq2_A 94 SFSPGSFSGLTSLENLVAVET-KLASLESFPIGQLITLKKLNVAHNFIHSCK-LPAYFSNLTNLVHVDLSYNYIQTITVN 171 (606)
T ss_dssp CCCTTSSTTCTTCCEEECTTS-CCCCSSSSCCTTCTTCCEEECCSSCCCCCC-CCGGGGTCTTCCEEECCSSCCCEECTT
T ss_pred ccChhhcCCcccCCEEEccCC-ccccccccccCCCCCCCEEeCCCCccccee-chHhHhhcCCCCEEEccCCcceecChh
Confidence 66 778999999999999999 777776 66999999999998877654311 123466777777777765543221111
Q ss_pred HHHHhcccCCCC-CccEEEEEeeCCCCCCCCcCCCCcCcccEEEEecCC
Q 039990 608 EKNILDMLKPHC-NIKRLEIISYGSTRFPSWVGDPSFSNVAVLKLENCD 655 (1217)
Q Consensus 608 ~~~~l~~l~~~~-~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~ 655 (1217)
. +..+..++ .+..|+++++....+|..... ..+|+.|++++|.
T Consensus 172 ~---~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~--~~~L~~L~L~~n~ 215 (606)
T 3vq2_A 172 D---LQFLRENPQVNLSLDMSLNPIDFIQDQAFQ--GIKLHELTLRGNF 215 (606)
T ss_dssp T---THHHHHCTTCCCEEECTTCCCCEECTTTTT--TCEEEEEEEESCC
T ss_pred h---hhhhhccccccceeeccCCCcceeCccccc--CceeeeeeccCCc
Confidence 0 00111111 134566666655555544432 2256666666653
No 11
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=3.9e-32 Score=365.96 Aligned_cols=302 Identities=19% Similarity=0.276 Sum_probs=236.0
Q ss_pred CCCCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhcc--ccCCC-CCeEEEEeCCcc--cHH
Q 039990 76 TSEPAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDK--LTDDF-KPKAWVCVSDDF--DIL 150 (1217)
Q Consensus 76 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~--~~~~F-~~~~wv~~~~~~--~~~ 150 (1217)
...+.||||++++++|.++|...+ ++.++|+|+||||+||||||+++|++. ...+| +.++||++++.. +..
T Consensus 121 ~~~~~~vgR~~~~~~l~~~l~~~~----~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 196 (1249)
T 3sfz_A 121 QRPVIFVTRKKLVHAIQQKLWKLN----GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLL 196 (1249)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHTTT----TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHH
T ss_pred CCCceeccHHHHHHHHHHHHhhcc----CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHH
Confidence 345679999999999999997653 456999999999999999999999875 35556 567799998854 455
Q ss_pred HHHHHHHHHhhcCCC----CCCChhHHHHHHHHHHHhc----------CcCHHHHHHhhcccCCCCCCcEEEEEcCchHH
Q 039990 151 RISKAILESITRSSC----GLTDLNSVQLKLKEAVFKK----------NKSYELWQALKSPFMAGAPGSRIIVTTRSMDV 216 (1217)
Q Consensus 151 ~~~~~i~~~l~~~~~----~~~~~~~~~~~l~~~l~~~----------~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~v 216 (1217)
..+..++..+..... ...+.+++...++..+.++ +++.+.|+. .++|++||||||++.+
T Consensus 197 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~-------~~~~~~ilvTtR~~~~ 269 (1249)
T 3sfz_A 197 MKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKA-------FDNQCQILLTTRDKSV 269 (1249)
T ss_dssp HHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTT-------TCSSCEEEEEESSTTT
T ss_pred HHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHh-------hcCCCEEEEEcCCHHH
Confidence 567778888765432 2345667777777776554 333333332 2579999999999998
Q ss_pred HHh-hCCCceEeccC-CChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhccCCchhHHHHHHHhhcCCChhHHHHHH
Q 039990 217 ALK-MGSGKNYELKH-LSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGLPLAARALGGLLRSKQRVDEWRAIL 294 (1217)
Q Consensus 217 ~~~-~~~~~~~~l~~-l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~~~ 294 (1217)
+.. ++....+++++ |+.+||++||...++.. .+...+.+++|+++|+|+||||+++|++|+.++ ..|.+.+
T Consensus 270 ~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~-----~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l 342 (1249)
T 3sfz_A 270 TDSVMGPKHVVPVESGLGREKGLEILSLFVNMK-----KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYL 342 (1249)
T ss_dssp TTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC-----STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHH
T ss_pred HHhhcCCceEEEecCCCCHHHHHHHHHHhhCCC-----hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHH
Confidence 854 35567899995 99999999999988432 244567899999999999999999999999876 3566665
Q ss_pred hhccCCC----CCC-----CCchHHHHHhhcCCChhHHHHHHHhhcCCCCcccChHHHHHHHHHhCCcccccccccHHHH
Q 039990 295 NSKIWDL----EDE-----IEIPSVLKLSYHHLPSHLKRCFAYCAILPKDYEFQEEELVLLWIAEGFIQQSKYSKQLEDW 365 (1217)
Q Consensus 295 ~~~~~~~----~~~-----~~i~~~l~~sy~~L~~~~k~~f~~~~~fp~~~~i~~~~li~~w~~~g~i~~~~~~~~~~~~ 365 (1217)
....... ... ..+..+|.+||+.||+++|.||++||+||+++.|+++.++..|.++ ++.
T Consensus 343 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~------------~~~ 410 (1249)
T 3sfz_A 343 RQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE------------TEE 410 (1249)
T ss_dssp HHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC------------HHH
T ss_pred HHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC------------HHH
Confidence 5432221 111 1588999999999999999999999999999999999999999543 366
Q ss_pred HHHHHHHHHhccCCcccCCC-CCeEEEchhHHHHHHHHhcCce
Q 039990 366 GSEYFHDLLSRSMFQKSSNN-ESKFVMHDLVHDLAQWASGDTC 407 (1217)
Q Consensus 366 ~~~~l~~L~~~sl~~~~~~~-~~~~~mh~lv~~~~~~~~~~~~ 407 (1217)
+++++++|+++||++...++ ..+|+||++||+|++..+.++.
T Consensus 411 ~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~~ 453 (1249)
T 3sfz_A 411 VEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQL 453 (1249)
T ss_dssp HHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGGH
T ss_pred HHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHHH
Confidence 88999999999999975432 3469999999999999877653
No 12
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.98 E-value=5.1e-30 Score=326.11 Aligned_cols=241 Identities=16% Similarity=0.093 Sum_probs=182.2
Q ss_pred CCCCccEEeecCCCCCcccccccccccCcceEeeccCCCccccccccCCCCcccEEEEcCCCCCccccccCCCCCCcceE
Q 039990 930 LPVTLKCIQIEDCSNFKVLTSECQLSVAVEELTIDSCSNIESIAERFHDDACLRSIRLSYCKNLKSLPKGLNNLSHLHRR 1009 (1217)
Q Consensus 930 ~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L 1009 (1217)
..++|+.|++++|......+..+..+++|+.|++++|......+..+..+++|++|++++|. +..++ .+++|+.|
T Consensus 312 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~----~~~~L~~L 386 (844)
T 3j0a_A 312 GLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA-LTTIH----FIPSIPDI 386 (844)
T ss_dssp TCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCC-SCCCS----SCCSCSEE
T ss_pred CCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCC-CCccc----CCCCcchh
Confidence 34589999999987766668888999999999999985433334557779999999999965 55443 38899999
Q ss_pred EecCCCCCcccCCCCCCCCcceEEEccCcCcccCCC--CCCCCCcceEeeccCCCccccCC--CCCCCCCCeEEecCCCC
Q 039990 1010 SIQGCHNLVSLPEDALPSNVVDVSIEDCDKLKAPLP--TGKLSSLQLLTLIECPGIVFFPE--EGLSTNLTDLEISGDNI 1085 (1217)
Q Consensus 1010 ~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~l~~c~~l~~~~~--~~~~~~L~~L~l~~~~~ 1085 (1217)
++++| .++.+|.. ..+++.|++++|.....+.. ...+++|++|++++|......+. ...+++|++|++++|..
T Consensus 387 ~l~~N-~l~~l~~~--~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l 463 (844)
T 3j0a_A 387 FLSGN-KLVTLPKI--NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENML 463 (844)
T ss_dssp EEESC-CCCCCCCC--CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCC
T ss_pred ccCCC-Cccccccc--ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCcc
Confidence 99996 46777753 46899999999875554211 25789999999999764332222 13478999999999987
Q ss_pred Ccc----ccccccccCCcccceeeccCCCccccccccccCCCCCCcceEeecCCCCCcccCccccCCccccccccccccc
Q 039990 1086 YKP----LVKWGFDKFSSLRKHCINRCSDAVSFPEVEKGVILPTSLTLIRISDFPKLERLSSKGFHYLLSLEQLKVSSCP 1161 (1217)
Q Consensus 1086 ~~~----~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~L~~L~l~~c~ 1161 (1217)
... .....|..+++|+.|+|++| .+..++. ..+..+++|+.|++++ |+++.+|...+. ++|+.|++++|
T Consensus 464 ~~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~--~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~--~~L~~L~Ls~N- 536 (844)
T 3j0a_A 464 QLAWETELCWDVFEGLSHLQVLYLNHN-YLNSLPP--GVFSHLTALRGLSLNS-NRLTVLSHNDLP--ANLEILDISRN- 536 (844)
T ss_dssp SSSCCSCCCSSCSSCBCCEECCCCCHH-HHTTCCT--TSSSSCCSCSEEEEES-CCCSSCCCCCCC--SCCCEEEEEEE-
T ss_pred ccccccccchhhhcCcccccEEECCCC-cccccCh--hHccchhhhheeECCC-CCCCccChhhhh--ccccEEECCCC-
Confidence 622 22235788999999999997 4555554 3567889999999999 799999866665 89999999999
Q ss_pred CcccCCCCCCCCccceEeccCCcch
Q 039990 1162 NFTSFPEAGFPSSLLFLDIQGCPLL 1186 (1217)
Q Consensus 1162 ~l~~lp~~~~~~sL~~L~l~~c~~l 1186 (1217)
.++.++.. .+.+|+.|+++++|-.
T Consensus 537 ~l~~~~~~-~~~~L~~l~l~~Np~~ 560 (844)
T 3j0a_A 537 QLLAPNPD-VFVSLSVLDITHNKFI 560 (844)
T ss_dssp CCCCCCSC-CCSSCCEEEEEEECCC
T ss_pred cCCCCChh-HhCCcCEEEecCCCcc
Confidence 55555443 4568999999987743
No 13
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=1.4e-28 Score=312.75 Aligned_cols=512 Identities=15% Similarity=0.109 Sum_probs=299.7
Q ss_pred CCcceEEEcCCCCcccccccccccccChhhhcccccCcEEecccccccccc-cccccccccccEEeecCCcccccc-CCC
Q 039990 481 CKKLRVLSLEKDNIAEVPISIGCLKCLPEAITSLFNLEILILSYCWCLLKL-PSSIGNLVNLHHLDIEGADRLCEL-PLG 558 (1217)
Q Consensus 481 l~~Lr~L~L~~~~i~~lp~~i~~L~~lp~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~l-p~~ 558 (1217)
.+.|++|||++|.|+.++ |.+|.++++|++|+|++|..+..+ |..|+++++|++|++++| .+..+ |..
T Consensus 23 p~~l~~LdLs~N~i~~i~---------~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N-~l~~~~p~~ 92 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVT---------ASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS-KIYFLHPDA 92 (844)
T ss_dssp CTTCCEEEEESCCCCEEC---------SSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC-CCCEECTTS
T ss_pred CCCcCEEECCCCcCCccC---------hhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC-cCcccCHhH
Confidence 357889999999888765 567888899999999988666667 667889999999999988 56665 677
Q ss_pred CccCcccccccccccccChhhhHHHHhcCCCCCCeEEEEecCCCCchhhHHHHhcccCCCCCccEEEEEeeCCCCCC--C
Q 039990 559 MKELKCLRTLTDFINVIDSQEANEAMLRGKKDLEVLKLVWSGGPVDELREKNILDMLKPHCNIKRLEIISYGSTRFP--S 636 (1217)
Q Consensus 559 i~~L~~L~~L~~~~n~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p--~ 636 (1217)
|+++++|++|++..|...........+.++ ++|+.|+++++.....+ .
T Consensus 93 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L------------------------------~~L~~L~Ls~N~l~~~~~~~ 142 (844)
T 3j0a_A 93 FQGLFHLFELRLYFCGLSDAVLKDGYFRNL------------------------------KALTRLDLSKNQIRSLYLHP 142 (844)
T ss_dssp SCSCSSCCCEECTTCCCSSCCSTTCCCSSC------------------------------SSCCEEEEESCCCCCCCCCG
T ss_pred ccCCcccCEeeCcCCCCCcccccCcccccc------------------------------CCCCEEECCCCcccccccch
Confidence 888888888887765443211111112333 33344444444333221 1
Q ss_pred CcCCCCcCcccEEEEecCCCCCCCC-CCCCc--CCCCeeEEcCCCCceEeCccccCCCCcccCcccceeecccccccccc
Q 039990 637 WVGDPSFSNVAVLKLENCDRCTSLP-SLGQL--CSLKDLTIVGMSALKSVGSEIYGEGCSKPFRSLQTLYFEDLQEWEHW 713 (1217)
Q Consensus 637 ~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l--~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 713 (1217)
.+. .+++|+.|++++|......+ .++.+ ++|+.|+++++......+..+.. +++
T Consensus 143 ~~~--~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~------~~~--------------- 199 (844)
T 3j0a_A 143 SFG--KLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGK------CMN--------------- 199 (844)
T ss_dssp GGG--TCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCS------SSC---------------
T ss_pred hHh--hCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhh------cCC---------------
Confidence 222 24555555555543222222 23333 45555555543211111111100 000
Q ss_pred ccCCccccccccCccccEEeecCCCCccCCCCCC------CCCccEEEEccCCCccccCCCCCcccEEEEccCCCccccC
Q 039990 714 EPNRENDEHVQAFSHLRKLSIKRCPKLSGRLPNH------LPSLEEIVIAGCMHLAVSLPSLPALCTMEIDGCKRLVCDG 787 (1217)
Q Consensus 714 ~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~p~~------l~~L~~L~l~~c~~l~~~~~~l~~L~~L~l~~~~~~~~~~ 787 (1217)
.+ ....|+.|++++| .+.+..|.. .+.++.+.+..+.... .+. ...+ .......
T Consensus 200 --------~~-~~~~L~~L~Ls~n-~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~-~~~-~~~l--------~~~~~~~ 259 (844)
T 3j0a_A 200 --------PF-RNMVLEILDVSGN-GWTVDITGNFSNAISKSQAFSLILAHHIMGA-GFG-FHNI--------KDPDQNT 259 (844)
T ss_dssp --------TT-TTCCBSEEBCSSC-CSSTTTTSGGGGTSCSCCBSEEECCSSCCBC-SSS-CSSS--------TTGGGTT
T ss_pred --------cc-ccCceeEEecCCC-cCchhHHHHHHhhcCcccccceecccccccc-ccc-cccc--------CCCChhh
Confidence 00 0112455555444 222122221 1344555544221100 000 0000 0000000
Q ss_pred CC--CCCCccceeeccccccccccccccccccceeeeccccCCCccccccccccCCCcccEEEEeccCCccccccc--CC
Q 039990 788 PS--ESKSLNEMALCNISKFENWSMENLVRFGFYSVDTSKDCNALTSLTDGMIHNNVRLEVLRIIGCHSLKSIARE--HL 863 (1217)
Q Consensus 788 ~~--~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~l~~c~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~i~~~--~~ 863 (1217)
+. ..++|+. |.+++ +.+..++...+..+++|+.|++++|. +..++.. ..
T Consensus 260 f~~l~~~~L~~-------------------------L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~ 312 (844)
T 3j0a_A 260 FAGLARSSVRH-------------------------LDLSH-GFVFSLNSRVFETLKDLKVLNLAYNK-INKIADEAFYG 312 (844)
T ss_dssp TTTTTTSCCCE-------------------------EECTT-CCCCEECSCCSSSCCCCCEEEEESCC-CCEECTTTTTT
T ss_pred hhccccCCccE-------------------------EECCC-CcccccChhhhhcCCCCCEEECCCCc-CCCCChHHhcC
Confidence 00 0122333 33333 33444555557777778888887754 3333222 12
Q ss_pred CCCccEEEecccCcccccccCCCCCCCCCcccccccCCCCCcccccccceEeccCCCCcccccCCCCCCCccEEeecCCC
Q 039990 864 PSSLKEIELEYCEIQQCVLDDGENSCASPSVLEKNINNSSSSTYLDLESLSVQSCPSLTRLWSSGRLPVTLKCIQIEDCS 943 (1217)
Q Consensus 864 ~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~ 943 (1217)
.++|++|++++|.... ..+......++|+.|++++|.
T Consensus 313 l~~L~~L~Ls~N~l~~-------------------------------------------~~~~~~~~l~~L~~L~L~~N~ 349 (844)
T 3j0a_A 313 LDNLQVLNLSYNLLGE-------------------------------------------LYSSNFYGLPKVAYIDLQKNH 349 (844)
T ss_dssp CSSCCEEEEESCCCSC-------------------------------------------CCSCSCSSCTTCCEEECCSCC
T ss_pred CCCCCEEECCCCCCCc-------------------------------------------cCHHHhcCCCCCCEEECCCCC
Confidence 3455555555544211 111222344589999999986
Q ss_pred CCcccccccccccCcceEeeccCCCccccccccCCCCcccEEEEcCCCCCccccccCCCCCCcceEEecCCCCCcccCCC
Q 039990 944 NFKVLTSECQLSVAVEELTIDSCSNIESIAERFHDDACLRSIRLSYCKNLKSLPKGLNNLSHLHRRSIQGCHNLVSLPED 1023 (1217)
Q Consensus 944 ~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~ 1023 (1217)
.....+..+.++++|++|++++|. +..++. +++|+.|++++|. +..+|.. ..+++.|++++| .++.++..
T Consensus 350 i~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~----~~~L~~L~l~~N~-l~~l~~~---~~~l~~L~ls~N-~l~~l~~~ 419 (844)
T 3j0a_A 350 IAIIQDQTFKFLEKLQTLDLRDNA-LTTIHF----IPSIPDIFLSGNK-LVTLPKI---NLTANLIHLSEN-RLENLDIL 419 (844)
T ss_dssp CCCCCSSCSCSCCCCCEEEEETCC-SCCCSS----CCSCSEEEEESCC-CCCCCCC---CTTCCEEECCSC-CCCSSTTH
T ss_pred CCccChhhhcCCCCCCEEECCCCC-CCcccC----CCCcchhccCCCC-ccccccc---ccccceeecccC-ccccCchh
Confidence 655556678899999999999975 444443 7899999999964 5677654 578999999986 46665431
Q ss_pred ---CCCCCcceEEEccCcCcccCCC--CCCCCCcceEeeccCCCcccc-----CC-CCCCCCCCeEEecCCCCCcccccc
Q 039990 1024 ---ALPSNVVDVSIEDCDKLKAPLP--TGKLSSLQLLTLIECPGIVFF-----PE-EGLSTNLTDLEISGDNIYKPLVKW 1092 (1217)
Q Consensus 1024 ---~~~~~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~l~~c~~l~~~-----~~-~~~~~~L~~L~l~~~~~~~~~~~~ 1092 (1217)
.-.++|+.|++++|.....+.. ...+++|++|++++|..-... +. ...+++|++|++++|......+ .
T Consensus 420 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~ 498 (844)
T 3j0a_A 420 YFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPP-G 498 (844)
T ss_dssp HHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCT-T
T ss_pred hhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccCh-h
Confidence 1346999999999986544222 356899999999997543111 11 1457899999999997665444 4
Q ss_pred ccccCCcccceeeccCCCccccccccccCCCCCCcceEeecCCCCCcccCccccCCcccccccccccccCccc
Q 039990 1093 GFDKFSSLRKHCINRCSDAVSFPEVEKGVILPTSLTLIRISDFPKLERLSSKGFHYLLSLEQLKVSSCPNFTS 1165 (1217)
Q Consensus 1093 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~ 1165 (1217)
.|..+++|++|+|++| .+..++. ..+ .++|+.|++++ |++..+++.. +.+|+.|++++|+..-.
T Consensus 499 ~~~~l~~L~~L~Ls~N-~l~~l~~--~~~--~~~L~~L~Ls~-N~l~~~~~~~---~~~L~~l~l~~Np~~C~ 562 (844)
T 3j0a_A 499 VFSHLTALRGLSLNSN-RLTVLSH--NDL--PANLEILDISR-NQLLAPNPDV---FVSLSVLDITHNKFICE 562 (844)
T ss_dssp SSSSCCSCSEEEEESC-CCSSCCC--CCC--CSCCCEEEEEE-ECCCCCCSCC---CSSCCEEEEEEECCCCS
T ss_pred HccchhhhheeECCCC-CCCccCh--hhh--hccccEEECCC-CcCCCCChhH---hCCcCEEEecCCCcccc
Confidence 6899999999999997 4566664 222 38999999999 7888777444 45899999999975543
No 14
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.97 E-value=5.6e-30 Score=313.27 Aligned_cols=300 Identities=19% Similarity=0.296 Sum_probs=224.3
Q ss_pred CCCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhcc-c-cCCCC-CeEEEEeCCccc--HHH
Q 039990 77 SEPAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDK-L-TDDFK-PKAWVCVSDDFD--ILR 151 (1217)
Q Consensus 77 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~-~-~~~F~-~~~wv~~~~~~~--~~~ 151 (1217)
..+.||||++++++|.++|.... ++.++|+|+||||+||||||++++++. + +.+|+ .++|++++.... +..
T Consensus 122 ~~~~~vGR~~~l~~L~~~L~~~~----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~~~~~~ 197 (591)
T 1z6t_A 122 RPVVFVTRKKLVNAIQQKLSKLK----GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLM 197 (591)
T ss_dssp CCSSCCCCHHHHHHHHHHHTTST----TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCHHHHHH
T ss_pred CCCeecccHHHHHHHHHHHhccc----CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCchHHHHH
Confidence 35679999999999999997542 446899999999999999999999874 4 78894 799999987532 222
Q ss_pred HHHHHHHHhhcC----CCCCCChhHHHHHHHHHHHh--c-----CcCHHHHHHhhcccCCCCCCcEEEEEcCchHHHHhh
Q 039990 152 ISKAILESITRS----SCGLTDLNSVQLKLKEAVFK--K-----NKSYELWQALKSPFMAGAPGSRIIVTTRSMDVALKM 220 (1217)
Q Consensus 152 ~~~~i~~~l~~~----~~~~~~~~~~~~~l~~~l~~--~-----~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~v~~~~ 220 (1217)
.+..++..++.. .....+.+.....+...+.+ + .|+....+.+.. + ++|++||||||+..++..+
T Consensus 198 ~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~-l---~~~~~ilvTsR~~~~~~~~ 273 (591)
T 1z6t_A 198 KLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKA-F---DSQCQILLTTRDKSVTDSV 273 (591)
T ss_dssp HHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHT-T---CSSCEEEEEESCGGGGTTC
T ss_pred HHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHH-h---cCCCeEEEECCCcHHHHhc
Confidence 333344455421 12344566777778887776 2 333333333322 2 5689999999999887554
Q ss_pred CCCceEec---cCCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhccCCchhHHHHHHHhhcCCChhHHHHHHhhc
Q 039990 221 GSGKNYEL---KHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGLPLAARALGGLLRSKQRVDEWRAILNSK 297 (1217)
Q Consensus 221 ~~~~~~~l---~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~~~~~~ 297 (1217)
. ...+++ ++|+.+||+++|...++.. .....+.+++|+++|+|+||||+++|++++.+. .+|..++...
T Consensus 274 ~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~-----~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~~~l~~l 345 (591)
T 1z6t_A 274 M-GPKYVVPVESSLGKEKGLEILSLFVNMK-----KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWEYYLKQL 345 (591)
T ss_dssp C-SCEEEEECCSSCCHHHHHHHHHHHHTSC-----GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHHHHHHHH
T ss_pred C-CCceEeecCCCCCHHHHHHHHHHHhCCC-----cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHHHHHHHH
Confidence 3 344554 5899999999999998541 223356789999999999999999999999874 4677666543
Q ss_pred cCCC----C-----CCCCchHHHHHhhcCCChhHHHHHHHhhcCCCCcccChHHHHHHHHHhCCcccccccccHHHHHHH
Q 039990 298 IWDL----E-----DEIEIPSVLKLSYHHLPSHLKRCFAYCAILPKDYEFQEEELVLLWIAEGFIQQSKYSKQLEDWGSE 368 (1217)
Q Consensus 298 ~~~~----~-----~~~~i~~~l~~sy~~L~~~~k~~f~~~~~fp~~~~i~~~~li~~w~~~g~i~~~~~~~~~~~~~~~ 368 (1217)
.... . ...++..++..||+.||++.|.||+++|+||+++.|+.+.++..|.++ .+.+.+
T Consensus 346 ~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~------------~~~~~~ 413 (591)
T 1z6t_A 346 QNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME------------TEEVED 413 (591)
T ss_dssp HSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC------------HHHHHH
T ss_pred HHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC------------HHHHHH
Confidence 2211 1 111688999999999999999999999999999999999999999532 245788
Q ss_pred HHHHHHhccCCcccC-CCCCeEEEchhHHHHHHHHhc
Q 039990 369 YFHDLLSRSMFQKSS-NNESKFVMHDLVHDLAQWASG 404 (1217)
Q Consensus 369 ~l~~L~~~sl~~~~~-~~~~~~~mh~lv~~~~~~~~~ 404 (1217)
++++|+++||++... +...+|+||+++|++++....
T Consensus 414 ~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 414 ILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp HHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHTG
T ss_pred HHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhhh
Confidence 999999999998653 234589999999999998743
No 15
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.96 E-value=1e-28 Score=302.47 Aligned_cols=206 Identities=17% Similarity=0.165 Sum_probs=114.9
Q ss_pred CccEEeecCCCCCcccccccccccCcceEeeccCCCcccc--ccccCCCCcccEEEEcCCCCCccccccCCCCCCcceEE
Q 039990 933 TLKCIQIEDCSNFKVLTSECQLSVAVEELTIDSCSNIESI--AERFHDDACLRSIRLSYCKNLKSLPKGLNNLSHLHRRS 1010 (1217)
Q Consensus 933 ~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l--~~~~~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~ 1010 (1217)
+|+.|++++|......+. ..+++|++|++++|...... +..+..+++|++|++++|. +..++..+..+++|+.|+
T Consensus 326 ~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~l~~L~~L~ 402 (570)
T 2z63_A 326 SLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLD 402 (570)
T ss_dssp SCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCS-EEEEEEEEETCTTCCEEE
T ss_pred ccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCc-cccccccccccCCCCEEE
Confidence 455555555543333322 44556666666554322211 3344445666666666643 333433355566666666
Q ss_pred ecCCCCCcccCCCCCCCCcceEEEccCcCcccCCCCCCCCCcceEeeccCCCccccCCC-CCCCCCCeEEecCCCCCc-c
Q 039990 1011 IQGCHNLVSLPEDALPSNVVDVSIEDCDKLKAPLPTGKLSSLQLLTLIECPGIVFFPEE-GLSTNLTDLEISGDNIYK-P 1088 (1217)
Q Consensus 1011 l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~~~~~~-~ 1088 (1217)
+++|. ++..+.. ..+..+++|++|++++|......+.. ..+++|++|++++|.... .
T Consensus 403 l~~n~-l~~~~~~--------------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 461 (570)
T 2z63_A 403 FQHSN-LKQMSEF--------------------SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 461 (570)
T ss_dssp CTTSE-EESCTTS--------------------CTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred ccCCc-cccccch--------------------hhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCcccc
Confidence 66543 2222110 12345666666666666543333332 345667777777666552 3
Q ss_pred ccccccccCCcccceeeccCCCccccccccccCCCCCCcceEeecCCCCCcccCccccCCcccccccccccccCcccCC
Q 039990 1089 LVKWGFDKFSSLRKHCINRCSDAVSFPEVEKGVILPTSLTLIRISDFPKLERLSSKGFHYLLSLEQLKVSSCPNFTSFP 1167 (1217)
Q Consensus 1089 ~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~lp 1167 (1217)
++. .+..+++|++|++++|......|. .+..+++|++|++++ +++..++...+.++++|+.|++++|+.....|
T Consensus 462 ~p~-~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 462 LPD-IFTELRNLTFLDLSQCQLEQLSPT---AFNSLSSLQVLNMAS-NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp ECS-CCTTCTTCCEEECTTSCCCEECTT---TTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred chh-hhhcccCCCEEECCCCccccCChh---hhhcccCCCEEeCCC-CcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence 332 567777778888877654433343 455667888888887 46777775667778888888888875444333
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.96 E-value=6.3e-28 Score=293.71 Aligned_cols=172 Identities=13% Similarity=0.128 Sum_probs=110.8
Q ss_pred CCCccEEeecCCCCCcccc---cccccccCcceEeeccCCCccccc---cccCCCCcccEEEEcCCCCCccccccCCCCC
Q 039990 931 PVTLKCIQIEDCSNFKVLT---SECQLSVAVEELTIDSCSNIESIA---ERFHDDACLRSIRLSYCKNLKSLPKGLNNLS 1004 (1217)
Q Consensus 931 ~~~L~~L~l~~~~~l~~~~---~~~~~l~~L~~L~l~~~~~l~~l~---~~~~~l~~L~~L~L~~c~~l~~l~~~l~~l~ 1004 (1217)
+++|+.|++++|.....++ ..+..+++|++|++++|. ++.++ ..+..+++|++|++++| .+..+|..+..++
T Consensus 333 l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~ 410 (549)
T 2z81_A 333 LKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH-LRSMQKTGEILLTLKNLTSLDISRN-TFHPMPDSCQWPE 410 (549)
T ss_dssp CTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSC-CCCHHHHHHHGGGCTTCCEEECTTC-CCCCCCSCCCCCT
T ss_pred CccccEEEccCCccccccccchhhhhccccCcEEEccCCc-ccccccchhhhhcCCCCCEEECCCC-CCccCChhhcccc
Confidence 3467777777776655443 235667788888888864 33333 33556788888888885 4567777777788
Q ss_pred CcceEEecCCCCCcccCCCCCCCCcceEEEccCcCcccCCCCCCCCCcceEeeccCCCccccCCCCCCCCCCeEEecCCC
Q 039990 1005 HLHRRSIQGCHNLVSLPEDALPSNVVDVSIEDCDKLKAPLPTGKLSSLQLLTLIECPGIVFFPEEGLSTNLTDLEISGDN 1084 (1217)
Q Consensus 1005 ~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~ 1084 (1217)
+|++|++++|. ++.++.. .+++|+.|++++|..... ...+++|++|++++| .+..+|....+++|++|++++|.
T Consensus 411 ~L~~L~Ls~N~-l~~l~~~-~~~~L~~L~Ls~N~l~~~---~~~l~~L~~L~Ls~N-~l~~ip~~~~l~~L~~L~Ls~N~ 484 (549)
T 2z81_A 411 KMRFLNLSSTG-IRVVKTC-IPQTLEVLDVSNNNLDSF---SLFLPRLQELYISRN-KLKTLPDASLFPVLLVMKISRNQ 484 (549)
T ss_dssp TCCEEECTTSC-CSCCCTT-SCTTCSEEECCSSCCSCC---CCCCTTCCEEECCSS-CCSSCCCGGGCTTCCEEECCSSC
T ss_pred cccEEECCCCC-cccccch-hcCCceEEECCCCChhhh---cccCChhcEEECCCC-ccCcCCCcccCccCCEEecCCCc
Confidence 88888888864 6666542 345777777777754433 146777777777775 34456655556667777777765
Q ss_pred CCccccccccccCCcccceeeccCCCc
Q 039990 1085 IYKPLVKWGFDKFSSLRKHCINRCSDA 1111 (1217)
Q Consensus 1085 ~~~~~~~~~~~~l~~L~~L~l~~~~~l 1111 (1217)
..+..+. .+..+++|+.|++++|+..
T Consensus 485 l~~~~~~-~~~~l~~L~~L~l~~N~~~ 510 (549)
T 2z81_A 485 LKSVPDG-IFDRLTSLQKIWLHTNPWD 510 (549)
T ss_dssp CCCCCTT-GGGGCTTCCEEECCSSCBC
T ss_pred cCCcCHH-HHhcCcccCEEEecCCCcc
Confidence 5543332 4566666666666666543
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=3.9e-28 Score=293.02 Aligned_cols=130 Identities=21% Similarity=0.192 Sum_probs=81.3
Q ss_pred CCCCCcceEeeccCCCcc--ccCCC-CCCCCCCeEEecCCCCCccccccccccCCcccceeeccCCCccccccccccCCC
Q 039990 1047 GKLSSLQLLTLIECPGIV--FFPEE-GLSTNLTDLEISGDNIYKPLVKWGFDKFSSLRKHCINRCSDAVSFPEVEKGVIL 1123 (1217)
Q Consensus 1047 ~~l~~L~~L~l~~c~~l~--~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 1123 (1217)
..+++|++|++++|.... .+|.. ..+++|++|++++|.....++...+..+++|++|++++|.....++. ..
T Consensus 345 ~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~-----~l 419 (520)
T 2z7x_B 345 GHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFR-----CL 419 (520)
T ss_dssp CCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGG-----SC
T ss_pred ccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhh-----hh
Confidence 455666666666543221 22211 34566666666666665545544566677777777777665455544 12
Q ss_pred CCCcceEeecCCCCCcccCccccCCcccccccccccccCcccCCCC--CCCCccceEeccCCc
Q 039990 1124 PTSLTLIRISDFPKLERLSSKGFHYLLSLEQLKVSSCPNFTSFPEA--GFPSSLLFLDIQGCP 1184 (1217)
Q Consensus 1124 ~~~L~~L~l~~c~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~lp~~--~~~~sL~~L~l~~c~ 1184 (1217)
+++|+.|++++ ++++.+| ..+.++++|++|++++| .++.+|.. ..+++|+.|++++||
T Consensus 420 ~~~L~~L~Ls~-N~l~~ip-~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 420 PPRIKVLDLHS-NKIKSIP-KQVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp CTTCCEEECCS-SCCCCCC-GGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cccCCEEECCC-Ccccccc-hhhhcCCCCCEEECCCC-cCCccCHHHhccCCcccEEECcCCC
Confidence 36777888877 5777777 44557778888888877 67777764 345777888877765
No 18
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=4.4e-28 Score=297.37 Aligned_cols=367 Identities=15% Similarity=0.220 Sum_probs=197.4
Q ss_pred cChhhhcccccCcEEeccccccccc------------------cccccc--ccccccEEeecCCccccccCCCCccCccc
Q 039990 506 CLPEAITSLFNLEILILSYCWCLLK------------------LPSSIG--NLVNLHHLDIEGADRLCELPLGMKELKCL 565 (1217)
Q Consensus 506 ~lp~~i~~L~~L~~L~L~~~~~l~~------------------lp~~i~--~L~~L~~L~l~~~~~l~~lp~~i~~L~~L 565 (1217)
.+|.+|+++++|++|+|++| .+.. +|..++ ++++|++|++++|.....+|..++++++|
T Consensus 197 ~ip~~l~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 275 (636)
T 4eco_A 197 FVSKAVMRLTKLRQFYMGNS-PFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEM 275 (636)
T ss_dssp EECGGGGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSC
T ss_pred cCCHHHhcccCCCEEECcCC-ccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCC
Confidence 45667777777777777776 4555 777766 77777777777774455667667777777
Q ss_pred ccccccccc-cChhhhHHHHhcCCCCCCeEEEEecCCCCchhhHHHHhcccCCCCCccEEEEEeeCCCCCCC--CcCCCC
Q 039990 566 RTLTDFINV-IDSQEANEAMLRGKKDLEVLKLVWSGGPVDELREKNILDMLKPHCNIKRLEIISYGSTRFPS--WVGDPS 642 (1217)
Q Consensus 566 ~~L~~~~n~-~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~--~~~~~~ 642 (1217)
++|++..|. .+... .+..+. .+..+..+++|+.|+++++....+|. ++..
T Consensus 276 ~~L~Ls~n~~l~~~~-lp~~~~------------------------~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~-- 328 (636)
T 4eco_A 276 QLINVACNRGISGEQ-LKDDWQ------------------------ALADAPVGEKIQIIYIGYNNLKTFPVETSLQK-- 328 (636)
T ss_dssp CEEECTTCTTSCHHH-HHHHHH------------------------HHHHSGGGGTCCEEECCSSCCSSCCCHHHHTT--
T ss_pred CEEECcCCCCCcccc-chHHHH------------------------hhhccccCCCCCEEECCCCcCCccCchhhhcc--
Confidence 777666553 32200 111111 11122234566666667776667776 5543
Q ss_pred cCcccEEEEecCCCCCCCCCCCCcCCCCeeEEcCCCCceEeCccccCCCCcccCcc-cceeeccccccccccccCCcccc
Q 039990 643 FSNVAVLKLENCDRCTSLPSLGQLCSLKDLTIVGMSALKSVGSEIYGEGCSKPFRS-LQTLYFEDLQEWEHWEPNRENDE 721 (1217)
Q Consensus 643 l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~l~~~~~~~~~~~ 721 (1217)
+++|+.|++++|.....+|.++.+++|+.|++++ +.+..++..+.. +++ |+.|+++++.
T Consensus 329 l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~-N~l~~lp~~l~~------l~~~L~~L~Ls~N~------------- 388 (636)
T 4eco_A 329 MKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAY-NQITEIPANFCG------FTEQVENLSFAHNK------------- 388 (636)
T ss_dssp CTTCCEEECCSCCCEEECCCCEEEEEESEEECCS-SEEEECCTTSEE------ECTTCCEEECCSSC-------------
T ss_pred CCCCCEEeCcCCcCccchhhhCCCCCCCEEECCC-CccccccHhhhh------hcccCcEEEccCCc-------------
Confidence 6777777777765443666666677777777765 334444433222 444 4444444433
Q ss_pred ccccCccccEEeecCCCCccCCCCCC-----CCCccEEEEccCCCccccCCCCCcccEEEEccCCCccccCCCCCCCccc
Q 039990 722 HVQAFSHLRKLSIKRCPKLSGRLPNH-----LPSLEEIVIAGCMHLAVSLPSLPALCTMEIDGCKRLVCDGPSESKSLNE 796 (1217)
Q Consensus 722 ~~~~~~~L~~L~l~~c~~L~~~~p~~-----l~~L~~L~l~~c~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~ 796 (1217)
+. .+|.. +++|+.|++++|.........++.. .......++|++
T Consensus 389 ------------------l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~------------~~~~~~~~~L~~ 437 (636)
T 4eco_A 389 ------------------LK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPL------------DPTPFKGINVSS 437 (636)
T ss_dssp ------------------CS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTT------------CSSCCCCCCEEE
T ss_pred ------------------Cc-ccchhhhhcccCccCEEECcCCcCCCcchhhhccc------------ccccccCCCCCE
Confidence 32 33331 2245555555543221100000000 000001112222
Q ss_pred eeeccccccccccccccccccceeeeccccCCCccccccccccCCCcccEEEEeccCCcccccccCCCCCccEEEecccC
Q 039990 797 MALCNISKFENWSMENLVRFGFYSVDTSKDCNALTSLTDGMIHNNVRLEVLRIIGCHSLKSIAREHLPSSLKEIELEYCE 876 (1217)
Q Consensus 797 L~l~~~~~l~~~~~~~~~~~~~l~~L~l~~c~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~L~~L~l~~~~ 876 (1217)
|++ ++ |.++.+|..++..+++|+.|++++|. +..++...+..
T Consensus 438 L~L-------------------------s~-N~l~~lp~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~----------- 479 (636)
T 4eco_A 438 INL-------------------------SN-NQISKFPKELFSTGSPLSSINLMGNM-LTEIPKNSLKD----------- 479 (636)
T ss_dssp EEC-------------------------CS-SCCCSCCTHHHHTTCCCSEEECCSSC-CSBCCSSSSEE-----------
T ss_pred EEC-------------------------cC-CccCcCCHHHHccCCCCCEEECCCCC-CCCcCHHHhcc-----------
Confidence 222 22 34456666666777888888887754 32333211100
Q ss_pred cccccccCCCCCCCCCcccccccCCCCCcccccccceEeccCCCCcccccCCCCCCCccEEeecCCCCCcccccccc--c
Q 039990 877 IQQCVLDDGENSCASPSVLEKNINNSSSSTYLDLESLSVQSCPSLTRLWSSGRLPVTLKCIQIEDCSNFKVLTSECQ--L 954 (1217)
Q Consensus 877 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~--~ 954 (1217)
.. ..+ ...++|+.|++++|... .+|..+. .
T Consensus 480 ---------------------------------~~----~~~----------~~l~~L~~L~Ls~N~l~-~lp~~~~~~~ 511 (636)
T 4eco_A 480 ---------------------------------EN----ENF----------KNTYLLTSIDLRFNKLT-KLSDDFRATT 511 (636)
T ss_dssp ---------------------------------TT----EEC----------TTGGGCCEEECCSSCCC-BCCGGGSTTT
T ss_pred ---------------------------------cc----ccc----------cccCCccEEECcCCcCC-ccChhhhhcc
Confidence 00 000 01125666666665433 5555554 6
Q ss_pred ccCcceEeeccCCCccccccccCCCCcccEEEEc------CCCCCccccccCCCCCCcceEEecCCCCCcccCCCCCCCC
Q 039990 955 SVAVEELTIDSCSNIESIAERFHDDACLRSIRLS------YCKNLKSLPKGLNNLSHLHRRSIQGCHNLVSLPEDALPSN 1028 (1217)
Q Consensus 955 l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~L~------~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~ 1028 (1217)
+++|+.|++++|... .+|..+..+++|++|+|+ +|.....+|..+..+++|+.|++++|. ++.+|.. +.++
T Consensus 512 l~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~ip~~-~~~~ 588 (636)
T 4eco_A 512 LPYLVGIDLSYNSFS-KFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND-IRKVNEK-ITPN 588 (636)
T ss_dssp CTTCCEEECCSSCCS-SCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSC-CCTT
T ss_pred CCCcCEEECCCCCCC-CcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCc-CCccCHh-HhCc
Confidence 777777777775433 366666667777777774 444566677777788888888888865 4777654 2356
Q ss_pred cceEEEccCcCc
Q 039990 1029 VVDVSIEDCDKL 1040 (1217)
Q Consensus 1029 L~~L~l~~~~~l 1040 (1217)
|+.|++++|+..
T Consensus 589 L~~L~Ls~N~l~ 600 (636)
T 4eco_A 589 ISVLDIKDNPNI 600 (636)
T ss_dssp CCEEECCSCTTC
T ss_pred CCEEECcCCCCc
Confidence 666666666543
No 19
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.96 E-value=4.3e-28 Score=295.23 Aligned_cols=179 Identities=25% Similarity=0.187 Sum_probs=106.3
Q ss_pred CccceEccccccccccccccchhhhhhhcCCCCcceEEEcCCCCcccccccccccccChhhhcccccCcEEecccccccc
Q 039990 450 ENLRTFLPIFMEDFFISFCISPMVLSDLLPKCKKLRVLSLEKDNIAEVPISIGCLKCLPEAITSLFNLEILILSYCWCLL 529 (1217)
Q Consensus 450 ~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~lp~~i~~L~~L~~L~L~~~~~l~ 529 (1217)
+++++|.+.++.. ..+.+..|..+++|++|+|++|+++.++ |.+|+++++|++|+|++| .+.
T Consensus 26 ~~L~~L~Ls~n~l--------~~~~~~~~~~l~~L~~L~Ls~n~i~~~~---------~~~~~~l~~L~~L~Ls~n-~l~ 87 (549)
T 2z81_A 26 AAMKSLDLSFNKI--------TYIGHGDLRACANLQVLILKSSRINTIE---------GDAFYSLGSLEHLDLSDN-HLS 87 (549)
T ss_dssp TTCCEEECCSSCC--------CEECSSTTSSCTTCCEEECTTSCCCEEC---------TTTTTTCTTCCEEECTTS-CCC
T ss_pred CCccEEECcCCcc--------CccChhhhhcCCcccEEECCCCCcCccC---------hhhccccccCCEEECCCC-ccC
Confidence 4677776665432 2334456777888888888888877755 466777888888888887 566
Q ss_pred ccccc-ccccccccEEeecCCccccc--cCCCCccCcccccccccccccChhhhHHHHhcCCCCCCeEEEEecCCCCchh
Q 039990 530 KLPSS-IGNLVNLHHLDIEGADRLCE--LPLGMKELKCLRTLTDFINVIDSQEANEAMLRGKKDLEVLKLVWSGGPVDEL 606 (1217)
Q Consensus 530 ~lp~~-i~~L~~L~~L~l~~~~~l~~--lp~~i~~L~~L~~L~~~~n~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 606 (1217)
.+|.. |+++++|++|++++| .+.. +|..++++++|++|++..|.... ......+.++++|+.|++..+.....
T Consensus 88 ~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~l~~L~~L~L~~n~~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~-- 163 (549)
T 2z81_A 88 SLSSSWFGPLSSLKYLNLMGN-PYQTLGVTSLFPNLTNLQTLRIGNVETFS-EIRRIDFAGLTSLNELEIKALSLRNY-- 163 (549)
T ss_dssp SCCHHHHTTCTTCCEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCC-EECTTTTTTCCEEEEEEEEETTCCEE--
T ss_pred ccCHHHhccCCCCcEEECCCC-cccccchhhhhhccCCccEEECCCCcccc-ccCHhhhhcccccCeeeccCCccccc--
Confidence 66654 788888888888887 5653 35667777777777766553111 11112355566666666655442211
Q ss_pred hHHHHhcccCCCCCccEEEEEeeCCCCCCCCcCCCCcCcccEEEEecCC
Q 039990 607 REKNILDMLKPHCNIKRLEIISYGSTRFPSWVGDPSFSNVAVLKLENCD 655 (1217)
Q Consensus 607 ~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~ 655 (1217)
....+..+++|+.|++.++....+|.++.. .+++|+.|++++|.
T Consensus 164 ----~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~L~~n~ 207 (549)
T 2z81_A 164 ----QSQSLKSIRDIHHLTLHLSESAFLLEIFAD-ILSSVRYLELRDTN 207 (549)
T ss_dssp ----CTTTTTTCSEEEEEEEECSBSTTHHHHHHH-STTTBSEEEEESCB
T ss_pred ----ChhhhhccccCceEecccCcccccchhhHh-hcccccEEEccCCc
Confidence 122344455555555555554444443321 24555555555543
No 20
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.95 E-value=2.1e-27 Score=290.81 Aligned_cols=482 Identities=15% Similarity=0.108 Sum_probs=271.4
Q ss_pred ccceEccccccccccccccchhhhhhhcCCCCcceEEEcCCCCcccccccccccccChhhhcccccCcEEeccccccccc
Q 039990 451 NLRTFLPIFMEDFFISFCISPMVLSDLLPKCKKLRVLSLEKDNIAEVPISIGCLKCLPEAITSLFNLEILILSYCWCLLK 530 (1217)
Q Consensus 451 ~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~lp~~i~~L~~L~~L~L~~~~~l~~ 530 (1217)
.+++|.+.++.. ..+.+..|.++++|++|+|++|.++.++ |..|+++.+|++|+|++| .+..
T Consensus 29 ~l~~L~Ls~n~l--------~~~~~~~~~~l~~L~~L~Ls~n~i~~i~---------~~~~~~l~~L~~L~L~~n-~l~~ 90 (570)
T 2z63_A 29 STKNLDLSFNPL--------RHLGSYSFFSFPELQVLDLSRCEIQTIE---------DGAYQSLSHLSTLILTGN-PIQS 90 (570)
T ss_dssp SCCEEECCSCCC--------CEECTTTTTTCSSCCEEECTTCCCCEEC---------TTTTTTCTTCCEEECTTC-CCCE
T ss_pred cccEEEccCCcc--------CccChhHhhCCCCceEEECCCCcCCccC---------cccccCchhCCEEeCcCC-cCCc
Confidence 466666554432 2334445777777788888777777665 456777777788887777 4555
Q ss_pred cc-ccccccccccEEeecCCccccccCC-CCccCcccccccccccccChhhhHHHHhcCCCCCCeEEEEecCCCCchhhH
Q 039990 531 LP-SSIGNLVNLHHLDIEGADRLCELPL-GMKELKCLRTLTDFINVIDSQEANEAMLRGKKDLEVLKLVWSGGPVDELRE 608 (1217)
Q Consensus 531 lp-~~i~~L~~L~~L~l~~~~~l~~lp~-~i~~L~~L~~L~~~~n~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 608 (1217)
+| ..|+++++|++|++++| .+..+|. .++++++|++|++..|...... .+..+.++++|+.|+++.+.......
T Consensus 91 ~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~-lp~~~~~l~~L~~L~l~~n~l~~~~~-- 166 (570)
T 2z63_A 91 LALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFK-LPEYFSNLTNLEHLDLSSNKIQSIYC-- 166 (570)
T ss_dssp ECTTTTTTCTTCCEEECTTS-CCCCSTTCSCTTCTTCCEEECCSSCCCCCC-CCGGGGGCTTCCEEECTTSCCCEECG--
T ss_pred cCHhhhcCcccccccccccc-ccccCCCccccccccccEEecCCCccceec-ChhhhcccCCCCEEeCcCCccceecH--
Confidence 54 45777777777777777 6776664 4777777777777665543211 12235667777777775443322111
Q ss_pred HHHhcccCCCCCc----cEEEEEeeCCCCCCCCcCCCCcCcccEEEEecCCC-CCCCC-CCCCcCCCCeeEEcC--C---
Q 039990 609 KNILDMLKPHCNI----KRLEIISYGSTRFPSWVGDPSFSNVAVLKLENCDR-CTSLP-SLGQLCSLKDLTIVG--M--- 677 (1217)
Q Consensus 609 ~~~l~~l~~~~~L----~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~-~~~l~-~l~~l~~L~~L~l~~--~--- 677 (1217)
..+..+.+| ..|+++++....++..... ..+|+.|+++++.. ...++ .+..+++++.+.+.. .
T Consensus 167 ----~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~ 240 (570)
T 2z63_A 167 ----TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK--EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE 240 (570)
T ss_dssp ----GGGHHHHTCTTCCCEEECTTCCCCEECTTTTT--TCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCC
T ss_pred ----HHccchhccchhhhhcccCCCCceecCHHHhc--cCcceeEecccccccccchhhhhcCccccceeeeccccccCc
Confidence 112222333 6788888777665543332 23788888887632 12222 244555555544431 1
Q ss_pred CCceEeCccccCCCCcccCc--ccceeeccccccccccccCCccccccccCccccEEeecCCCCccCCCCC---CCCCcc
Q 039990 678 SALKSVGSEIYGEGCSKPFR--SLQTLYFEDLQEWEHWEPNRENDEHVQAFSHLRKLSIKRCPKLSGRLPN---HLPSLE 752 (1217)
Q Consensus 678 ~~l~~~~~~~~~~~~~~~~~--~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~p~---~l~~L~ 752 (1217)
..+..+....+. .++ .++.+.+.++..+... ....+..+++|+.|+++++ .+. .+|. .+ +|+
T Consensus 241 ~~l~~~~~~~~~-----~l~~l~l~~l~l~~~~~~~~~-----~~~~~~~l~~L~~L~l~~~-~l~-~l~~~~~~~-~L~ 307 (570)
T 2z63_A 241 GNLEKFDKSALE-----GLCNLTIEEFRLAYLDYYLDD-----IIDLFNCLTNVSSFSLVSV-TIE-RVKDFSYNF-GWQ 307 (570)
T ss_dssp SSCEECCTTTTG-----GGGGSEEEEEEEEETTEEESC-----STTTTGGGTTCSEEEEESC-EEC-SCCBCCSCC-CCS
T ss_pred hhhhhcchhhhc-----cccccchhhhhhhcchhhhhh-----chhhhcCcCcccEEEecCc-cch-hhhhhhccC-Ccc
Confidence 112222211111 111 1233333333221111 1222335677777777776 343 3443 23 677
Q ss_pred EEEEccCCCccccCCCCCcccEEEEccCCCccccCCCCCCCccceeeccccccccccccccccccceeeeccccCCCccc
Q 039990 753 EIVIAGCMHLAVSLPSLPALCTMEIDGCKRLVCDGPSESKSLNEMALCNISKFENWSMENLVRFGFYSVDTSKDCNALTS 832 (1217)
Q Consensus 753 ~L~l~~c~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~l~~c~~l~~ 832 (1217)
.|++.+|.........+++|+.|++.++..........+++|++|++++ | .++.
T Consensus 308 ~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~-------------------------n-~l~~ 361 (570)
T 2z63_A 308 HLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSR-------------------------N-GLSF 361 (570)
T ss_dssp EEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCS-------------------------S-CCBE
T ss_pred EEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcC-------------------------C-ccCc
Confidence 7777776544322234556666666655443333333444444444443 2 2222
Q ss_pred cc--cccccCCCcccEEEEeccCCcccccccCCCCCccEEEecccCcccccccCCCCCCCCCcccccccCCCCCcccccc
Q 039990 833 LT--DGMIHNNVRLEVLRIIGCHSLKSIAREHLPSSLKEIELEYCEIQQCVLDDGENSCASPSVLEKNINNSSSSTYLDL 910 (1217)
Q Consensus 833 l~--~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 910 (1217)
++ ...+..+++|++|++++|......+.....++|+.|++++|......+
T Consensus 362 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~---------------------------- 413 (570)
T 2z63_A 362 KGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSE---------------------------- 413 (570)
T ss_dssp EEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTT----------------------------
T ss_pred cccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccc----------------------------
Confidence 21 122556677777777765422211112223455555555443211100
Q ss_pred cceEeccCCCCcccccCCCCCCCccEEeecCCCCCcccccccccccCcceEeeccCCCc-cccccccCCCCcccEEEEcC
Q 039990 911 ESLSVQSCPSLTRLWSSGRLPVTLKCIQIEDCSNFKVLTSECQLSVAVEELTIDSCSNI-ESIAERFHDDACLRSIRLSY 989 (1217)
Q Consensus 911 ~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l-~~l~~~~~~l~~L~~L~L~~ 989 (1217)
......+++|+.|++++|......+..+.++++|++|++++|... ..+|..+..+++|++|++++
T Consensus 414 --------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~ 479 (570)
T 2z63_A 414 --------------FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479 (570)
T ss_dssp --------------SCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTT
T ss_pred --------------hhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCC
Confidence 011233457888888887766667777778888888888887654 35777777788888888888
Q ss_pred CCCCccccccCCCCCCcceEEecCCCCCcccCCCCC--CCCcceEEEccCcCccc
Q 039990 990 CKNLKSLPKGLNNLSHLHRRSIQGCHNLVSLPEDAL--PSNVVDVSIEDCDKLKA 1042 (1217)
Q Consensus 990 c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~~~~l~~ 1042 (1217)
|......|..+..+++|++|++++| .++.++...+ .++|+.|++++|+....
T Consensus 480 n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 533 (570)
T 2z63_A 480 CQLEQLSPTAFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCS 533 (570)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CccccCChhhhhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCCcccCC
Confidence 7655555778888888888888886 4666654333 36888888888864433
No 21
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.95 E-value=1.8e-27 Score=295.01 Aligned_cols=364 Identities=14% Similarity=0.163 Sum_probs=198.0
Q ss_pred ChhhhcccccCcEEeccccccccc------------------cccccc--ccccccEEeecCCccccccCCCCccCcccc
Q 039990 507 LPEAITSLFNLEILILSYCWCLLK------------------LPSSIG--NLVNLHHLDIEGADRLCELPLGMKELKCLR 566 (1217)
Q Consensus 507 lp~~i~~L~~L~~L~L~~~~~l~~------------------lp~~i~--~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~ 566 (1217)
+|.+|++|++|++|+|++| .+.. +|..++ ++++|++|++++|.....+|..+++|++|+
T Consensus 440 IP~~l~~L~~L~~L~Ls~N-~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~ 518 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANS-PFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ 518 (876)
T ss_dssp ECGGGGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCC
T ss_pred hhHHHhcCCCCCEEECcCC-cCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCC
Confidence 5556666666666666665 3444 566555 666666666666644555565566666666
Q ss_pred cccccccc-cChhhhHHHHhcCCCCCCeEEEEecCCCCchhhHHHHhc-ccCCCCCccEEEEEeeCCCCCCC--CcCCCC
Q 039990 567 TLTDFINV-IDSQEANEAMLRGKKDLEVLKLVWSGGPVDELREKNILD-MLKPHCNIKRLEIISYGSTRFPS--WVGDPS 642 (1217)
Q Consensus 567 ~L~~~~n~-~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~-~l~~~~~L~~L~l~~~~~~~~p~--~~~~~~ 642 (1217)
+|++..|. .+.. ........+. .+..+++|+.|+++++....+|. ++..
T Consensus 519 ~L~Ls~N~~lsg~-------------------------~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~-- 571 (876)
T 4ecn_A 519 SLNIACNRGISAA-------------------------QLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQK-- 571 (876)
T ss_dssp EEECTTCTTSCHH-------------------------HHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTT--
T ss_pred EEECcCCCCcccc-------------------------cchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhc--
Confidence 66555443 2210 0001111111 44566788888888888778887 6654
Q ss_pred cCcccEEEEecCCCCCCCCCCCCcCCCCeeEEcCCCCceEeCccccCCCCcccCcccceeeccccccccccccCCccccc
Q 039990 643 FSNVAVLKLENCDRCTSLPSLGQLCSLKDLTIVGMSALKSVGSEIYGEGCSKPFRSLQTLYFEDLQEWEHWEPNRENDEH 722 (1217)
Q Consensus 643 l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 722 (1217)
+++|+.|+|++|... .+|.++.+++|+.|+++++ .+..++..+.
T Consensus 572 L~~L~~L~Ls~N~l~-~lp~~~~L~~L~~L~Ls~N-~l~~lp~~l~---------------------------------- 615 (876)
T 4ecn_A 572 MVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYN-QIEEIPEDFC---------------------------------- 615 (876)
T ss_dssp CTTCCEEECTTSCCC-BCCCCCTTSEESEEECCSS-CCSCCCTTSC----------------------------------
T ss_pred CCCCCEEECCCCCcc-cchhhcCCCcceEEECcCC-ccccchHHHh----------------------------------
Confidence 778888888886543 7777788888888888764 3334433222
Q ss_pred cccCcc-ccEEeecCCCCccCCCCCCC-----CCccEEEEccCCCccccCCCCCcccEEEEccCCCccccCCCCCCCccc
Q 039990 723 VQAFSH-LRKLSIKRCPKLSGRLPNHL-----PSLEEIVIAGCMHLAVSLPSLPALCTMEIDGCKRLVCDGPSESKSLNE 796 (1217)
Q Consensus 723 ~~~~~~-L~~L~l~~c~~L~~~~p~~l-----~~L~~L~l~~c~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~ 796 (1217)
.+++ |+.|++++| .+. .+|..+ ++|+.|++++|.... .++.++. .......++|+.
T Consensus 616 --~l~~~L~~L~Ls~N-~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g-~ip~l~~-------------~l~~~~~~~L~~ 677 (876)
T 4ecn_A 616 --AFTDQVEGLGFSHN-KLK-YIPNIFNAKSVYVMGSVDFSYNKIGS-EGRNISC-------------SMDDYKGINAST 677 (876)
T ss_dssp --EECTTCCEEECCSS-CCC-SCCSCCCTTCSSCEEEEECCSSCTTT-TSSSCSS-------------CTTTCCCCCEEE
T ss_pred --hccccCCEEECcCC-CCC-cCchhhhccccCCCCEEECcCCcCCC-ccccchh-------------hhccccCCCcCE
Confidence 2333 444444444 233 333321 225555555553211 0000000 000000112222
Q ss_pred eeeccccccccccccccccccceeeeccccCCCccccccccccCCCcccEEEEeccCCcccccccCCCCCccEEEecccC
Q 039990 797 MALCNISKFENWSMENLVRFGFYSVDTSKDCNALTSLTDGMIHNNVRLEVLRIIGCHSLKSIAREHLPSSLKEIELEYCE 876 (1217)
Q Consensus 797 L~l~~~~~l~~~~~~~~~~~~~l~~L~l~~c~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~L~~L~l~~~~ 876 (1217)
| .+++ |.++.+|..++..+++|+.|++++|. +..++...+..
T Consensus 678 L-------------------------~Ls~-N~L~~lp~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~~~----------- 719 (876)
T 4ecn_A 678 V-------------------------TLSY-NEIQKFPTELFATGSPISTIILSNNL-MTSIPENSLKP----------- 719 (876)
T ss_dssp E-------------------------ECCS-SCCCSCCHHHHHTTCCCSEEECCSCC-CSCCCTTSSSC-----------
T ss_pred E-------------------------EccC-CcCCccCHHHHccCCCCCEEECCCCc-CCccChHHhcc-----------
Confidence 2 2222 34456666666677788888887753 33333211100
Q ss_pred cccccccCCCCCCCCCcccccccCCCCCcccccccceEeccCCCCcccccCCCCCCCccEEeecCCCCCcccccccc--c
Q 039990 877 IQQCVLDDGENSCASPSVLEKNINNSSSSTYLDLESLSVQSCPSLTRLWSSGRLPVTLKCIQIEDCSNFKVLTSECQ--L 954 (1217)
Q Consensus 877 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~--~ 954 (1217)
. . +....+++|+.|++++|... .+|..+. .
T Consensus 720 ---------------------------------~----~----------~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~ 751 (876)
T 4ecn_A 720 ---------------------------------K----D----------GNYKNTYLLTTIDLRFNKLT-SLSDDFRATT 751 (876)
T ss_dssp ---------------------------------T----T----------SCCTTGGGCCEEECCSSCCC-CCCGGGSTTT
T ss_pred ---------------------------------c----c----------ccccccCCccEEECCCCCCc-cchHHhhhcc
Confidence 0 0 00001125666666665333 5565555 6
Q ss_pred ccCcceEeeccCCCccccccccCCCCcccEEEEcC------CCCCccccccCCCCCCcceEEecCCCCCcccCCCCCCCC
Q 039990 955 SVAVEELTIDSCSNIESIAERFHDDACLRSIRLSY------CKNLKSLPKGLNNLSHLHRRSIQGCHNLVSLPEDALPSN 1028 (1217)
Q Consensus 955 l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~L~~------c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~ 1028 (1217)
+++|+.|++++|.. ..+|..+..+++|+.|+|++ |.....+|..+..+++|+.|++++|. ++.+|.. +.++
T Consensus 752 l~~L~~L~Ls~N~L-~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~-L~~Ip~~-l~~~ 828 (876)
T 4ecn_A 752 LPYLSNMDVSYNCF-SSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND-IRKVDEK-LTPQ 828 (876)
T ss_dssp CTTCCEEECCSSCC-SSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSC-CCSS
T ss_pred CCCcCEEEeCCCCC-CccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCC-CCccCHh-hcCC
Confidence 77777777777543 34666666677777777765 44566677788888888888888865 4777764 3346
Q ss_pred cceEEEccCcCcc
Q 039990 1029 VVDVSIEDCDKLK 1041 (1217)
Q Consensus 1029 L~~L~l~~~~~l~ 1041 (1217)
|+.|++++|+...
T Consensus 829 L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 829 LYILDIADNPNIS 841 (876)
T ss_dssp SCEEECCSCTTCE
T ss_pred CCEEECCCCCCCc
Confidence 6666666665433
No 22
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.95 E-value=2.7e-26 Score=285.70 Aligned_cols=204 Identities=17% Similarity=0.167 Sum_probs=107.0
Q ss_pred cccCcceEeeccCCCc--cccccccCCCCcccEEEEcCCCCCccccccCCCCCCcceEEecCCCCCcccCCCCCCCCcce
Q 039990 954 LSVAVEELTIDSCSNI--ESIAERFHDDACLRSIRLSYCKNLKSLPKGLNNLSHLHRRSIQGCHNLVSLPEDALPSNVVD 1031 (1217)
Q Consensus 954 ~l~~L~~L~l~~~~~l--~~l~~~~~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~ 1031 (1217)
.+++|+.|+++++... ...+.....+.+|+.|++..+. ...++..+..+++|+.+++.++......+..
T Consensus 369 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~-~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~-------- 439 (635)
T 4g8a_A 369 DLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFS-------- 439 (635)
T ss_dssp BCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCS-EEEECSCCTTCTTCCEEECTTSEEESTTSSC--------
T ss_pred cccccccchhhccccccccccccchhhhhhhhhhhccccc-cccccccccccccccchhhhhcccccccccc--------
Confidence 4555666666554332 1223333445666666666643 3334445566666666666665433322221
Q ss_pred EEEccCcCcccCCCCCCCCCcceEeeccCCCccccCCC-CCCCCCCeEEecCCCCCccccccccccCCcccceeeccCCC
Q 039990 1032 VSIEDCDKLKAPLPTGKLSSLQLLTLIECPGIVFFPEE-GLSTNLTDLEISGDNIYKPLVKWGFDKFSSLRKHCINRCSD 1110 (1217)
Q Consensus 1032 L~l~~~~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 1110 (1217)
.+..+++++.+++++|......+.. ..+++|+.|++++|.....+....|..+++|++|+|++|.
T Consensus 440 -------------~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~- 505 (635)
T 4g8a_A 440 -------------VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ- 505 (635)
T ss_dssp -------------TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-
T ss_pred -------------ccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCc-
Confidence 1234455555555544322222222 3345555555555554443333355666666666666653
Q ss_pred ccccccccccCCCCCCcceEeecCCCCCcccCccccCCcccccccccccccCcccCCCC---CCCCccceEeccCCc
Q 039990 1111 AVSFPEVEKGVILPTSLTLIRISDFPKLERLSSKGFHYLLSLEQLKVSSCPNFTSFPEA---GFPSSLLFLDIQGCP 1184 (1217)
Q Consensus 1111 l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~lp~~---~~~~sL~~L~l~~c~ 1184 (1217)
+..++. ..|..+++|++|++++ |++..+++..+.++++|++|++++| .++.++.. ..+++|+.|++++||
T Consensus 506 L~~l~~--~~f~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 506 LEQLSP--TAFNSLSSLQVLNMSH-NNFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp CCEECT--TTTTTCTTCCEEECTT-SCCCBCCCGGGTTCTTCCEEECTTS-CCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred cCCcCh--HHHcCCCCCCEEECCC-CcCCCCChhHHhCCCCCCEEECCCC-cCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 333322 2455566677777766 5666666556666777777777776 45554432 223567777776554
No 23
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=1.9e-26 Score=278.18 Aligned_cols=429 Identities=14% Similarity=0.091 Sum_probs=224.9
Q ss_pred CcceEEEcCCCCcccccccccccccChhhhcccccCcEEecccccccccc-cccccccccccEEeecCCccccccCCCCc
Q 039990 482 KKLRVLSLEKDNIAEVPISIGCLKCLPEAITSLFNLEILILSYCWCLLKL-PSSIGNLVNLHHLDIEGADRLCELPLGMK 560 (1217)
Q Consensus 482 ~~Lr~L~L~~~~i~~lp~~i~~L~~lp~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~i~ 560 (1217)
++|++|+|++|.++.++ |.+|.++++|++|+|++| .+..+ |..|+++++|++|++++| .+..+|..
T Consensus 21 ~~L~~L~Ls~n~i~~~~---------~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~-- 87 (520)
T 2z7x_B 21 QKTTILNISQNYISELW---------TSDILSLSKLRILIISHN-RIQYLDISVFKFNQELEYLDLSHN-KLVKISCH-- 87 (520)
T ss_dssp TTCSEEECCSSCCCCCC---------HHHHTTCTTCCEEECCSS-CCCEEEGGGGTTCTTCCEEECCSS-CCCEEECC--
T ss_pred ccccEEECCCCcccccC---------hhhccccccccEEecCCC-ccCCcChHHhhcccCCCEEecCCC-ceeecCcc--
Confidence 56777777777776654 456777777777777777 45554 556777777777777777 66677665
Q ss_pred cCcccccccccccccChhhhHHHHhcCCCCCCeEEEEecCCCCchhhHHHHhcccCCCCCc--cEEEEEeeCC---CCCC
Q 039990 561 ELKCLRTLTDFINVIDSQEANEAMLRGKKDLEVLKLVWSGGPVDELREKNILDMLKPHCNI--KRLEIISYGS---TRFP 635 (1217)
Q Consensus 561 ~L~~L~~L~~~~n~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~L--~~L~l~~~~~---~~~p 635 (1217)
.+++|++|++..|.+.... .+..++++++|+.|+++.+.... ..+..+++| +.|++.++.. ...|
T Consensus 88 ~l~~L~~L~L~~N~l~~~~-~p~~~~~l~~L~~L~L~~n~l~~---------~~~~~l~~L~L~~L~l~~n~l~~~~~~~ 157 (520)
T 2z7x_B 88 PTVNLKHLDLSFNAFDALP-ICKEFGNMSQLKFLGLSTTHLEK---------SSVLPIAHLNISKVLLVLGETYGEKEDP 157 (520)
T ss_dssp CCCCCSEEECCSSCCSSCC-CCGGGGGCTTCCEEEEEESSCCG---------GGGGGGTTSCEEEEEEEECTTTTSSCCT
T ss_pred ccCCccEEeccCCcccccc-chhhhccCCcceEEEecCcccch---------hhccccccceeeEEEeeccccccccccc
Confidence 6777777776666544311 11235666777777776654322 112233444 7777777765 3345
Q ss_pred CCcCCCCcCcccEEEEecCCCCCCCC--CCCCcCCCCeeEEcCCCC---ceEeCccccCCCCcccCcccceeeccccccc
Q 039990 636 SWVGDPSFSNVAVLKLENCDRCTSLP--SLGQLCSLKDLTIVGMSA---LKSVGSEIYGEGCSKPFRSLQTLYFEDLQEW 710 (1217)
Q Consensus 636 ~~~~~~~l~~L~~L~L~~~~~~~~l~--~l~~l~~L~~L~l~~~~~---l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 710 (1217)
.++..... ....+++.++.....++ .+..+++|+.|+++++.. ...+...
T Consensus 158 ~~l~~l~~-~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~------------------------ 212 (520)
T 2z7x_B 158 EGLQDFNT-ESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSI------------------------ 212 (520)
T ss_dssp TTTTTCCE-EEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHH------------------------
T ss_pred cccccccc-ceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecc------------------------
Confidence 54433111 23345555555444444 355677777777765421 0000000
Q ss_pred cccccCCccccccccCccccEEeecCCCCccCCCC----C--CCCCccEEEEccCCCccccCCCCCcccEEEEccCCCcc
Q 039990 711 EHWEPNRENDEHVQAFSHLRKLSIKRCPKLSGRLP----N--HLPSLEEIVIAGCMHLAVSLPSLPALCTMEIDGCKRLV 784 (1217)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~p----~--~l~~L~~L~l~~c~~l~~~~~~l~~L~~L~l~~~~~~~ 784 (1217)
...+..+++|+.|++.++ .+.+..+ . ..++|+.|++++|....
T Consensus 213 ---------~~~l~~l~~L~~L~l~~~-~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~--------------------- 261 (520)
T 2z7x_B 213 ---------LAKLQTNPKLSNLTLNNI-ETTWNSFIRILQLVWHTTVWYFSISNVKLQG--------------------- 261 (520)
T ss_dssp ---------HHGGGGCTTCCEEEEEEE-EEEHHHHHHHHHHHHTSSCSEEEEEEEEEES---------------------
T ss_pred ---------hhhhccccchhhcccccc-ccCHHHHHHHHHHhhhCcccEEEeecccccC---------------------
Confidence 001113444555555443 1110000 0 12345555555542110
Q ss_pred ccCCCCCCCccceeeccccccccccccccccccceeeeccccCCCcccccccc----ccCCCcccEEEEeccCCcccccc
Q 039990 785 CDGPSESKSLNEMALCNISKFENWSMENLVRFGFYSVDTSKDCNALTSLTDGM----IHNNVRLEVLRIIGCHSLKSIAR 860 (1217)
Q Consensus 785 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~l~~c~~l~~l~~~~----~~~l~~L~~L~l~~c~~l~~i~~ 860 (1217)
.+|..+ ..++++|+.+++++|.. .+|.
T Consensus 262 -----------------------------------------------~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~ 292 (520)
T 2z7x_B 262 -----------------------------------------------QLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQ 292 (520)
T ss_dssp -----------------------------------------------CCCCCCCCCCSCCCCEEEEEEEEECCC--CSCT
T ss_pred -----------------------------------------------ccccchhhcccccCceeEeccccccce--ecch
Confidence 000000 13344455555554432 2221
Q ss_pred cCC-----CCCccEEEecccCcccccccCCCCCCCCCcccccccCCCCCcccccccceEeccCCCCcccccCCCCCCCcc
Q 039990 861 EHL-----PSSLKEIELEYCEIQQCVLDDGENSCASPSVLEKNINNSSSSTYLDLESLSVQSCPSLTRLWSSGRLPVTLK 935 (1217)
Q Consensus 861 ~~~-----~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~ 935 (1217)
..+ ..+|+.|++++|... .. .....+++|+
T Consensus 293 ~~~~~~~~~~~L~~L~l~~n~l~--------------------------------------------~~-~~~~~l~~L~ 327 (520)
T 2z7x_B 293 SYIYEIFSNMNIKNFTVSGTRMV--------------------------------------------HM-LCPSKISPFL 327 (520)
T ss_dssp HHHHHHHHTCCCSEEEEESSCCC--------------------------------------------CC-CCCSSCCCCC
T ss_pred hhhhcccccCceeEEEcCCCccc--------------------------------------------cc-cchhhCCccc
Confidence 000 022333433333211 00 0002334677
Q ss_pred EEeecCCCCCcccccccccccCcceEeeccCCCcc--ccccccCCCCcccEEEEcCCCCCcccccc-CCCCCCcceEEec
Q 039990 936 CIQIEDCSNFKVLTSECQLSVAVEELTIDSCSNIE--SIAERFHDDACLRSIRLSYCKNLKSLPKG-LNNLSHLHRRSIQ 1012 (1217)
Q Consensus 936 ~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~--~l~~~~~~l~~L~~L~L~~c~~l~~l~~~-l~~l~~L~~L~l~ 1012 (1217)
.|++++|.....++..+..+++|++|++++|.... .+|..+..+++|++|++++|.....+|.. +..+++|+.|+++
T Consensus 328 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls 407 (520)
T 2z7x_B 328 HLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMS 407 (520)
T ss_dssp EEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECC
T ss_pred EEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECc
Confidence 77777776666667777778888888888875443 45566677888888888886654446654 6777888888888
Q ss_pred CCCCCcccCCCCCCCCcceEEEccCcCcccCCCCCCCCCcceEeeccCCCccccCCC--CCCCCCCeEEecCCCC
Q 039990 1013 GCHNLVSLPEDALPSNVVDVSIEDCDKLKAPLPTGKLSSLQLLTLIECPGIVFFPEE--GLSTNLTDLEISGDNI 1085 (1217)
Q Consensus 1013 ~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~~~~ 1085 (1217)
+|.....++. .++++|+.|++++|.....+.....+++|++|++++| .+..+|.. ..+++|++|++++|+.
T Consensus 408 ~N~l~~~~~~-~l~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 408 SNILTDTIFR-CLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHTNPW 480 (520)
T ss_dssp SSCCCGGGGG-SCCTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCCCCcchhh-hhcccCCEEECCCCcccccchhhhcCCCCCEEECCCC-cCCccCHHHhccCCcccEEECcCCCC
Confidence 8754344433 2235666666666654433322345566666666664 23344432 2234444444444443
No 24
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.94 E-value=2.3e-26 Score=282.10 Aligned_cols=175 Identities=18% Similarity=0.205 Sum_probs=119.9
Q ss_pred hhhhcCCCCcceEEEcCCCCcccc-------cccccccc-cChhhhc--ccccCcEEecccccccccccccccccccccE
Q 039990 474 LSDLLPKCKKLRVLSLEKDNIAEV-------PISIGCLK-CLPEAIT--SLFNLEILILSYCWCLLKLPSSIGNLVNLHH 543 (1217)
Q Consensus 474 ~~~~~~~l~~Lr~L~L~~~~i~~l-------p~~i~~L~-~lp~~i~--~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 543 (1217)
+|..|.++++|++|+|++|.++.. |.....+. .+|.+++ ++++|++|+|++|.....+|..|+++++|++
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL 277 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence 566799999999999999999871 11000000 1567788 9999999999999778899999999999999
Q ss_pred EeecCCcccc--ccCCCCccC------cccccccccccccChhhhHHHHhcCCCCCCeEEEEecCCCCchhhHHHHhccc
Q 039990 544 LDIEGADRLC--ELPLGMKEL------KCLRTLTDFINVIDSQEANEAMLRGKKDLEVLKLVWSGGPVDELREKNILDML 615 (1217)
Q Consensus 544 L~l~~~~~l~--~lp~~i~~L------~~L~~L~~~~n~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l 615 (1217)
|++++|..+. .+|.++++| ++|++|++..|...... ....+.++
T Consensus 278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip-~~~~l~~l--------------------------- 329 (636)
T 4eco_A 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFP-VETSLQKM--------------------------- 329 (636)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCC-CHHHHTTC---------------------------
T ss_pred EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccC-chhhhccC---------------------------
Confidence 9999994266 589888876 78888877665544111 00123444
Q ss_pred CCCCCccEEEEEeeCCC-CCCCCcCCCCcCcccEEEEecCCCCCCCC-CCCCcCC-CCeeEEcCCCCceEeC
Q 039990 616 KPHCNIKRLEIISYGST-RFPSWVGDPSFSNVAVLKLENCDRCTSLP-SLGQLCS-LKDLTIVGMSALKSVG 684 (1217)
Q Consensus 616 ~~~~~L~~L~l~~~~~~-~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~-L~~L~l~~~~~l~~~~ 684 (1217)
++|+.|+++++... .+| .+. .+++|+.|++++|.. ..+| .++.+++ |++|+++++ .+..++
T Consensus 330 ---~~L~~L~L~~N~l~g~ip-~~~--~l~~L~~L~L~~N~l-~~lp~~l~~l~~~L~~L~Ls~N-~l~~lp 393 (636)
T 4eco_A 330 ---KKLGMLECLYNQLEGKLP-AFG--SEIKLASLNLAYNQI-TEIPANFCGFTEQVENLSFAHN-KLKYIP 393 (636)
T ss_dssp ---TTCCEEECCSCCCEEECC-CCE--EEEEESEEECCSSEE-EECCTTSEEECTTCCEEECCSS-CCSSCC
T ss_pred ---CCCCEEeCcCCcCccchh-hhC--CCCCCCEEECCCCcc-ccccHhhhhhcccCcEEEccCC-cCcccc
Confidence 45555555555555 556 332 367788888877643 3566 4777777 888888764 344444
No 25
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.94 E-value=2.2e-25 Score=276.42 Aligned_cols=160 Identities=16% Similarity=0.206 Sum_probs=83.0
Q ss_pred CcccEEEEcCCCCCccccccC-CCCCCcceEEecCCCCCcccCCCCCCCCcceEEEccCcCcccCCCCCCCCCcceEeec
Q 039990 980 ACLRSIRLSYCKNLKSLPKGL-NNLSHLHRRSIQGCHNLVSLPEDALPSNVVDVSIEDCDKLKAPLPTGKLSSLQLLTLI 1058 (1217)
Q Consensus 980 ~~L~~L~L~~c~~l~~l~~~l-~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~ 1058 (1217)
++|+.|++++|. +..+|..+ ..+++|+.|++++| .++.+|...+... .....++++|++|+++
T Consensus 673 ~~L~~L~Ls~N~-L~~lp~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~--------------~~~l~nl~~L~~L~Ls 736 (876)
T 4ecn_A 673 INASTVTLSYNE-IQKFPTELFATGSPISTIILSNN-LMTSIPENSLKPK--------------DGNYKNTYLLTTIDLR 736 (876)
T ss_dssp CCEEEEECCSSC-CCSCCHHHHHTTCCCSEEECCSC-CCSCCCTTSSSCT--------------TSCCTTGGGCCEEECC
T ss_pred CCcCEEEccCCc-CCccCHHHHccCCCCCEEECCCC-cCCccChHHhccc--------------cccccccCCccEEECC
Confidence 456666666643 33555443 35666666666664 3445544222100 0001234455555555
Q ss_pred cCCCccccCCC-C--CCCCCCeEEecCCCCCccccccccccCCcccceeecc------CCCccccccccccCCCCCCcce
Q 039990 1059 ECPGIVFFPEE-G--LSTNLTDLEISGDNIYKPLVKWGFDKFSSLRKHCINR------CSDAVSFPEVEKGVILPTSLTL 1129 (1217)
Q Consensus 1059 ~c~~l~~~~~~-~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~------~~~l~~~~~~~~~~~~~~~L~~ 1129 (1217)
+|. +..+|.. . .+++|+.|++++|.... ++. .+..+++|+.|+|++ |.....+|. .+..+++|+.
T Consensus 737 ~N~-L~~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~-~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~---~l~~L~~L~~ 810 (876)
T 4ecn_A 737 FNK-LTSLSDDFRATTLPYLSNMDVSYNCFSS-FPT-QPLNSSQLKAFGIRHQRDAEGNRILRQWPT---GITTCPSLIQ 810 (876)
T ss_dssp SSC-CCCCCGGGSTTTCTTCCEEECCSSCCSS-CCC-GGGGCTTCCEEECCCCBCTTCCBCCCCCCT---TGGGCSSCCE
T ss_pred CCC-CccchHHhhhccCCCcCEEEeCCCCCCc-cch-hhhcCCCCCEEECCCCCCcccccccccChH---HHhcCCCCCE
Confidence 542 3344433 2 45566666666655544 332 355666666666655 333444444 3445677777
Q ss_pred EeecCCCCCcccCccccCCcccccccccccccCcccC
Q 039990 1130 IRISDFPKLERLSSKGFHYLLSLEQLKVSSCPNFTSF 1166 (1217)
Q Consensus 1130 L~l~~c~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~l 1166 (1217)
|++++ |.++.+| ..+. ++|+.|++++|+ +..+
T Consensus 811 L~Ls~-N~L~~Ip-~~l~--~~L~~LdLs~N~-l~~i 842 (876)
T 4ecn_A 811 LQIGS-NDIRKVD-EKLT--PQLYILDIADNP-NISI 842 (876)
T ss_dssp EECCS-SCCCBCC-SCCC--SSSCEEECCSCT-TCEE
T ss_pred EECCC-CCCCccC-Hhhc--CCCCEEECCCCC-CCcc
Confidence 77776 4557776 3333 567777777773 4443
No 26
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.93 E-value=3.8e-25 Score=268.90 Aligned_cols=217 Identities=13% Similarity=0.093 Sum_probs=117.4
Q ss_pred CccEEeecCCCCCccccccc-----ccccCcceEeeccCCCccccccc-c---CCCCcccEEEEcCCCCCccccccCCCC
Q 039990 933 TLKCIQIEDCSNFKVLTSEC-----QLSVAVEELTIDSCSNIESIAER-F---HDDACLRSIRLSYCKNLKSLPKGLNNL 1003 (1217)
Q Consensus 933 ~L~~L~l~~~~~l~~~~~~~-----~~l~~L~~L~l~~~~~l~~l~~~-~---~~l~~L~~L~L~~c~~l~~l~~~l~~l 1003 (1217)
+|+.|++++|...+.+|..+ ..++.|+.+++..+.. .+|.. + ....+|++|++++|.. ..++ ....+
T Consensus 277 ~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~-~~~~-~~~~l 352 (562)
T 3a79_B 277 PVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPF-IHMV-CPPSP 352 (562)
T ss_dssp SEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCC-CCCC-CCSSC
T ss_pred cccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCc-cccc-CccCC
Confidence 56666666665444455444 4444555555554432 33311 1 1124567777777543 2221 11456
Q ss_pred CCcceEEecCCCCCcccCCCCCCCCcceEEEccCcCcccCCCCCCCCCcceEeeccCCCccccC---C-CCCCCCCCeEE
Q 039990 1004 SHLHRRSIQGCHNLVSLPEDALPSNVVDVSIEDCDKLKAPLPTGKLSSLQLLTLIECPGIVFFP---E-EGLSTNLTDLE 1079 (1217)
Q Consensus 1004 ~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~---~-~~~~~~L~~L~ 1079 (1217)
++|++|++++|..-..+| ..+..+++|++|++++|. +..++ . ...+++|++|+
T Consensus 353 ~~L~~L~l~~n~l~~~~~----------------------~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~l~~L~~L~ 409 (562)
T 3a79_B 353 SSFTFLNFTQNVFTDSVF----------------------QGCSTLKRLQTLILQRNG-LKNFFKVALMTKNMSSLETLD 409 (562)
T ss_dssp CCCCEEECCSSCCCTTTT----------------------TTCCSCSSCCEEECCSSC-CCBTTHHHHTTTTCTTCCEEE
T ss_pred CCceEEECCCCccccchh----------------------hhhcccCCCCEEECCCCC-cCCcccchhhhcCCCCCCEEE
Confidence 666666666653222222 223455666666666643 32222 1 13456666666
Q ss_pred ecCCCCCccccccccccCCcccceeeccCCCccccccccccCCCCCCcceEeecCCCCCcccCccccCCccccccccccc
Q 039990 1080 ISGDNIYKPLVKWGFDKFSSLRKHCINRCSDAVSFPEVEKGVILPTSLTLIRISDFPKLERLSSKGFHYLLSLEQLKVSS 1159 (1217)
Q Consensus 1080 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~L~~L~l~~ 1159 (1217)
+++|.....++...+..+++|++|++++|.....++. ..+++|+.|++++ |+++.+| ..+.++++|++|++++
T Consensus 410 l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-----~l~~~L~~L~L~~-N~l~~ip-~~~~~l~~L~~L~L~~ 482 (562)
T 3a79_B 410 VSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFR-----CLPPKVKVLDLHN-NRIMSIP-KDVTHLQALQELNVAS 482 (562)
T ss_dssp CTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGS-----SCCTTCSEEECCS-SCCCCCC-TTTTSSCCCSEEECCS
T ss_pred CCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhh-----hhcCcCCEEECCC-CcCcccC-hhhcCCCCCCEEECCC
Confidence 6666655545444566667777777777654444443 1125677777776 4666776 4444677777777777
Q ss_pred ccCcccCCCC--CCCCccceEeccCCc
Q 039990 1160 CPNFTSFPEA--GFPSSLLFLDIQGCP 1184 (1217)
Q Consensus 1160 c~~l~~lp~~--~~~~sL~~L~l~~c~ 1184 (1217)
| .++.+|.. ..+++|+.|++++||
T Consensus 483 N-~l~~l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 483 N-QLKSVPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp S-CCCCCCTTSTTTCTTCCCEECCSCC
T ss_pred C-CCCCCCHHHHhcCCCCCEEEecCCC
Confidence 7 56666653 345677777777664
No 27
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.93 E-value=5e-25 Score=274.19 Aligned_cols=180 Identities=20% Similarity=0.102 Sum_probs=126.1
Q ss_pred ccceEccccccccccccccchhhhhhhcCCCCcceEEEcCCCCcccccccccccccChhhhcccccCcEEeccccccccc
Q 039990 451 NLRTFLPIFMEDFFISFCISPMVLSDLLPKCKKLRVLSLEKDNIAEVPISIGCLKCLPEAITSLFNLEILILSYCWCLLK 530 (1217)
Q Consensus 451 ~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~lp~~i~~L~~L~~L~L~~~~~l~~ 530 (1217)
.++.|.+.++.. ..+++..|.++++|++|+|++|+|+.+| |.+|.+|++|++|+|++| .++.
T Consensus 53 ~~~~LdLs~N~i--------~~l~~~~f~~l~~L~~L~Ls~N~i~~i~---------~~~f~~L~~L~~L~Ls~N-~l~~ 114 (635)
T 4g8a_A 53 STKNLDLSFNPL--------RHLGSYSFFSFPELQVLDLSRCEIQTIE---------DGAYQSLSHLSTLILTGN-PIQS 114 (635)
T ss_dssp TCCEEECTTSCC--------CEECTTTTTTCTTCCEEECTTCCCCEEC---------TTTTTTCTTCCEEECTTC-CCCE
T ss_pred CCCEEEeeCCCC--------CCCCHHHHhCCCCCCEEECCCCcCCCcC---------hhHhcCCCCCCEEEccCC-cCCC
Confidence 678887776543 4566778999999999999999999887 467999999999999999 7888
Q ss_pred cccc-ccccccccEEeecCCccccccCCC-CccCcccccccccccccChhhhHHHHhcCCCCCCeEEEEecCCCCchhhH
Q 039990 531 LPSS-IGNLVNLHHLDIEGADRLCELPLG-MKELKCLRTLTDFINVIDSQEANEAMLRGKKDLEVLKLVWSGGPVDELRE 608 (1217)
Q Consensus 531 lp~~-i~~L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~~~~n~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 608 (1217)
+|.+ |.+|++|++|++++| .+..+|.. |+++++|++|++..|.+..... +..+..+++|+.|+++.+.........
T Consensus 115 l~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~ 192 (635)
T 4g8a_A 115 LALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKL-PEYFSNLTNLEHLDLSSNKIQSIYCTD 192 (635)
T ss_dssp ECGGGGTTCTTCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSCCCCCCC-CGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred CCHHHhcCCCCCCEEECCCC-cCCCCChhhhhcCcccCeeccccCccccCCC-chhhccchhhhhhcccCcccccccccc
Confidence 8865 799999999999999 78888864 8999999999998876643221 234667889999998766543322222
Q ss_pred HHHhcccCCCCCccEEEEEeeCCCCCCCCcCCCCcCcccEEEEecC
Q 039990 609 KNILDMLKPHCNIKRLEIISYGSTRFPSWVGDPSFSNVAVLKLENC 654 (1217)
Q Consensus 609 ~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~ 654 (1217)
...+..+. .....++++.+....++..... ...+..+.+.++
T Consensus 193 l~~L~~l~--~~~~~~~ls~n~l~~i~~~~~~--~~~~~~l~l~~n 234 (635)
T 4g8a_A 193 LRVLHQMP--LLNLSLDLSLNPMNFIQPGAFK--EIRLHKLTLRNN 234 (635)
T ss_dssp GHHHHTCT--TCCCEEECTTCCCCEECTTTTT--TCEEEEEEEESC
T ss_pred ccchhhhh--hhhhhhhcccCcccccCccccc--chhhhhhhhhcc
Confidence 11111111 1233455555555544433321 344566666664
No 28
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.93 E-value=1.6e-24 Score=263.32 Aligned_cols=128 Identities=11% Similarity=0.073 Sum_probs=75.6
Q ss_pred CCccEEeecCCCCCcccccccccccCcceEeeccCCCcc--ccccccCCCCcccEEEEcCCCCCcccccc-CCCCCCcce
Q 039990 932 VTLKCIQIEDCSNFKVLTSECQLSVAVEELTIDSCSNIE--SIAERFHDDACLRSIRLSYCKNLKSLPKG-LNNLSHLHR 1008 (1217)
Q Consensus 932 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~--~l~~~~~~l~~L~~L~L~~c~~l~~l~~~-l~~l~~L~~ 1008 (1217)
++|+.|++++|.....++..+..+++|+.|++++|.... .+|..+..+++|++|++++|.....+|.. +..+++|+.
T Consensus 353 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~ 432 (562)
T 3a79_B 353 SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILV 432 (562)
T ss_dssp CCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCE
T ss_pred CCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCE
Confidence 467777777776666566667777778888887764322 33445666777888888776544435543 566777888
Q ss_pred EEecCCCCCcccCCCCCCCCcceEEEccCcCcccCCCCCCCCCcceEeeccC
Q 039990 1009 RSIQGCHNLVSLPEDALPSNVVDVSIEDCDKLKAPLPTGKLSSLQLLTLIEC 1060 (1217)
Q Consensus 1009 L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~c 1060 (1217)
|++++|.....++. .++++|+.|++++|.....+.....+++|++|++++|
T Consensus 433 L~l~~n~l~~~~~~-~l~~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N 483 (562)
T 3a79_B 433 LNLSSNMLTGSVFR-CLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASN 483 (562)
T ss_dssp EECCSSCCCGGGGS-SCCTTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSS
T ss_pred EECCCCCCCcchhh-hhcCcCCEEECCCCcCcccChhhcCCCCCCEEECCCC
Confidence 88877653333332 2224555555555543333333345555555555553
No 29
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.93 E-value=1.3e-24 Score=253.86 Aligned_cols=212 Identities=19% Similarity=0.243 Sum_probs=107.4
Q ss_pred CCccEEeecCCCCCcccccccccccCcceEeeccCCCccccccccCCCCcccEEEEcCCCCCccccccCCCCCCcceEEe
Q 039990 932 VTLKCIQIEDCSNFKVLTSECQLSVAVEELTIDSCSNIESIAERFHDDACLRSIRLSYCKNLKSLPKGLNNLSHLHRRSI 1011 (1217)
Q Consensus 932 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~l 1011 (1217)
.+|+.|++++|... .+|. +..+++|++|++++|. +..+|.. +++|++|++++|. +..+|.. +++|+.|++
T Consensus 215 ~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~-l~~l~~~---~~~L~~L~l~~N~-l~~l~~~---~~~L~~L~l 284 (454)
T 1jl5_A 215 LSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNL-LKTLPDL---PPSLEALNVRDNY-LTDLPEL---PQSLTFLDV 284 (454)
T ss_dssp TTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSC-CSSCCSC---CTTCCEEECCSSC-CSCCCCC---CTTCCEEEC
T ss_pred CcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCc-CCccccc---ccccCEEECCCCc-ccccCcc---cCcCCEEEC
Confidence 47888888887544 6663 7788888888888864 4455542 4788888888854 5556553 377888888
Q ss_pred cCCCCCcccCCCCCCCCcceEEEccCcCcccCCCCCCC-CCcceEeeccCCCccccCCCCCCCCCCeEEecCCCCCcccc
Q 039990 1012 QGCHNLVSLPEDALPSNVVDVSIEDCDKLKAPLPTGKL-SSLQLLTLIECPGIVFFPEEGLSTNLTDLEISGDNIYKPLV 1090 (1217)
Q Consensus 1012 ~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~l-~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~ 1090 (1217)
++|. ++.++. .+++|+.|++++|..... ..+ ++|++|++++|. +..+|. .+++|++|++++|... .++
T Consensus 285 s~N~-l~~l~~--~~~~L~~L~l~~N~l~~i----~~~~~~L~~L~Ls~N~-l~~lp~--~~~~L~~L~L~~N~l~-~lp 353 (454)
T 1jl5_A 285 SENI-FSGLSE--LPPNLYYLNASSNEIRSL----CDLPPSLEELNVSNNK-LIELPA--LPPRLERLIASFNHLA-EVP 353 (454)
T ss_dssp CSSC-CSEESC--CCTTCCEEECCSSCCSEE----CCCCTTCCEEECCSSC-CSCCCC--CCTTCCEEECCSSCCS-CCC
T ss_pred cCCc-cCcccC--cCCcCCEEECcCCcCCcc----cCCcCcCCEEECCCCc-cccccc--cCCcCCEEECCCCccc-ccc
Confidence 8864 666653 456788888887765443 123 478888887754 444543 3577788888777555 343
Q ss_pred ccccccCCcccceeeccCCCccccccccccCCCCCCcceEeecCCCCCcccCccccCCcccccccccccccCcccCCCCC
Q 039990 1091 KWGFDKFSSLRKHCINRCSDAVSFPEVEKGVILPTSLTLIRISDFPKLERLSSKGFHYLLSLEQLKVSSCPNFTSFPEAG 1170 (1217)
Q Consensus 1091 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~lp~~~ 1170 (1217)
. .+++|++|++++|... .+|. .+..+..|.. ++....+| . .+++|++|++++| .++.+|.
T Consensus 354 ~----~l~~L~~L~L~~N~l~-~l~~------ip~~l~~L~~--n~~~~~i~-~---~~~~L~~L~ls~N-~l~~~~~-- 413 (454)
T 1jl5_A 354 E----LPQNLKQLHVEYNPLR-EFPD------IPESVEDLRM--NSHLAEVP-E---LPQNLKQLHVETN-PLREFPD-- 413 (454)
T ss_dssp C----CCTTCCEEECCSSCCS-SCCC------CCTTCCEEEC--CC----------------------------------
T ss_pred c----hhhhccEEECCCCCCC-cCCC------ChHHHHhhhh--cccccccc-c---ccCcCCEEECCCC-cCCcccc--
Confidence 2 3677777777775433 3221 1233444432 23444555 1 2478999999999 5665544
Q ss_pred CCCccceEeccCCc
Q 039990 1171 FPSSLLFLDIQGCP 1184 (1217)
Q Consensus 1171 ~~~sL~~L~l~~c~ 1184 (1217)
.|++++.|.+.+|.
T Consensus 414 iP~sl~~L~~~~~~ 427 (454)
T 1jl5_A 414 IPESVEDLRMNSER 427 (454)
T ss_dssp --------------
T ss_pred chhhHhheeCcCcc
Confidence 56788888888774
No 30
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.92 E-value=5.8e-24 Score=248.48 Aligned_cols=404 Identities=20% Similarity=0.217 Sum_probs=193.8
Q ss_pred CCcceEEEcCCCCcccccccccccccChhhhcccccCcEEecccccccccccccccccccc-------------cEEeec
Q 039990 481 CKKLRVLSLEKDNIAEVPISIGCLKCLPEAITSLFNLEILILSYCWCLLKLPSSIGNLVNL-------------HHLDIE 547 (1217)
Q Consensus 481 l~~Lr~L~L~~~~i~~lp~~i~~L~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L-------------~~L~l~ 547 (1217)
...|++|++++|.+..+ |.+|++|++|++|++++|.....+|.+++++++| ++|+++
T Consensus 10 ~~~L~~L~l~~n~l~~i----------P~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~ 79 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEM----------PVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELN 79 (454)
T ss_dssp ----------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECT
T ss_pred cccchhhhcccCchhhC----------ChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEec
Confidence 46899999999988755 4678888999999999986556889889888876 778888
Q ss_pred CCccccccCCCCccCcccccccccccccChhhhHHHHhcCCCCCCeEEEEecCCCCchhhHHHHhcccCCCCCccEEEEE
Q 039990 548 GADRLCELPLGMKELKCLRTLTDFINVIDSQEANEAMLRGKKDLEVLKLVWSGGPVDELREKNILDMLKPHCNIKRLEII 627 (1217)
Q Consensus 548 ~~~~l~~lp~~i~~L~~L~~L~~~~n~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~ 627 (1217)
+| .++.+|.. .++|++|++..|..... . ..+++|+.|+++
T Consensus 80 ~~-~l~~lp~~---~~~L~~L~l~~n~l~~l---------------------------------p---~~~~~L~~L~l~ 119 (454)
T 1jl5_A 80 NL-GLSSLPEL---PPHLESLVASCNSLTEL---------------------------------P---ELPQSLKSLLVD 119 (454)
T ss_dssp TS-CCSCCCSC---CTTCSEEECCSSCCSSC---------------------------------C---CCCTTCCEEECC
T ss_pred CC-ccccCCCC---cCCCCEEEccCCcCCcc---------------------------------c---cccCCCcEEECC
Confidence 77 67777652 24555555444322210 0 012567777777
Q ss_pred eeCCCCCCCCcCCCCcCcccEEEEecCCCCCCCCCCCCcCCCCeeEEcCCCCceEeCccccCCCCcccCcccceeecccc
Q 039990 628 SYGSTRFPSWVGDPSFSNVAVLKLENCDRCTSLPSLGQLCSLKDLTIVGMSALKSVGSEIYGEGCSKPFRSLQTLYFEDL 707 (1217)
Q Consensus 628 ~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 707 (1217)
++....+|.. .++|+.|++++|. +..+|.++.+++|++|+++++ .++.++. .+++|+.|+++++
T Consensus 120 ~n~l~~l~~~-----~~~L~~L~L~~n~-l~~lp~~~~l~~L~~L~l~~N-~l~~lp~---------~~~~L~~L~L~~n 183 (454)
T 1jl5_A 120 NNNLKALSDL-----PPLLEYLGVSNNQ-LEKLPELQNSSFLKIIDVDNN-SLKKLPD---------LPPSLEFIAAGNN 183 (454)
T ss_dssp SSCCSCCCSC-----CTTCCEEECCSSC-CSSCCCCTTCTTCCEEECCSS-CCSCCCC---------CCTTCCEEECCSS
T ss_pred CCccCcccCC-----CCCCCEEECcCCC-CCCCcccCCCCCCCEEECCCC-cCcccCC---------CcccccEEECcCC
Confidence 7776666642 2578888888864 445778888888888888864 4444432 1457888888876
Q ss_pred ccccccccCCccccccccCccccEEeecCCCCccCCCCCCCCCccEEEEccCCCccc-cCCCCCcccEEEEccCCCcccc
Q 039990 708 QEWEHWEPNRENDEHVQAFSHLRKLSIKRCPKLSGRLPNHLPSLEEIVIAGCMHLAV-SLPSLPALCTMEIDGCKRLVCD 786 (1217)
Q Consensus 708 ~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~p~~l~~L~~L~l~~c~~l~~-~~~~l~~L~~L~l~~~~~~~~~ 786 (1217)
.. .... .+..+++|+.|++++| .+. .+|...++|+.|++++|..... .+..+++|++|+++++......
T Consensus 184 ~l-~~l~-------~~~~l~~L~~L~l~~N-~l~-~l~~~~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~l~ 253 (454)
T 1jl5_A 184 QL-EELP-------ELQNLPFLTAIYADNN-SLK-KLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLP 253 (454)
T ss_dssp CC-SSCC-------CCTTCTTCCEEECCSS-CCS-SCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCC
T ss_pred cC-CcCc-------cccCCCCCCEEECCCC-cCC-cCCCCcCcccEEECcCCcCCcccccCCCCCCCEEECCCCcCCccc
Confidence 43 2211 1336888888888888 565 5676667888888888743211 2334555666666554322110
Q ss_pred CCCCCCCccceeeccccccccccccccccccceeeeccccCCCccccccccccCCCcccEEEEeccCCcccccccCCCCC
Q 039990 787 GPSESKSLNEMALCNISKFENWSMENLVRFGFYSVDTSKDCNALTSLTDGMIHNNVRLEVLRIIGCHSLKSIAREHLPSS 866 (1217)
Q Consensus 787 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~l~~c~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~ 866 (1217)
..+++|++|+++ + |.++.+|.. +++|+.|++++|. +..++ ..+++
T Consensus 254 --~~~~~L~~L~l~-------------------------~-N~l~~l~~~----~~~L~~L~ls~N~-l~~l~--~~~~~ 298 (454)
T 1jl5_A 254 --DLPPSLEALNVR-------------------------D-NYLTDLPEL----PQSLTFLDVSENI-FSGLS--ELPPN 298 (454)
T ss_dssp --SCCTTCCEEECC-------------------------S-SCCSCCCCC----CTTCCEEECCSSC-CSEES--CCCTT
T ss_pred --ccccccCEEECC-------------------------C-CcccccCcc----cCcCCEEECcCCc-cCccc--CcCCc
Confidence 011223333322 2 223333322 2445555555532 22221 12234
Q ss_pred ccEEEecccCcccccccCCCCCCCCCcccccccCCCCCcccccccceEeccCCCCcccccCCCCCCCccEEeecCCCCCc
Q 039990 867 LKEIELEYCEIQQCVLDDGENSCASPSVLEKNINNSSSSTYLDLESLSVQSCPSLTRLWSSGRLPVTLKCIQIEDCSNFK 946 (1217)
Q Consensus 867 L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~ 946 (1217)
|+.|++++|. ++.+ ...+.+|+.|++++|...
T Consensus 299 L~~L~l~~N~--------------------------------------------l~~i---~~~~~~L~~L~Ls~N~l~- 330 (454)
T 1jl5_A 299 LYYLNASSNE--------------------------------------------IRSL---CDLPPSLEELNVSNNKLI- 330 (454)
T ss_dssp CCEEECCSSC--------------------------------------------CSEE---CCCCTTCCEEECCSSCCS-
T ss_pred CCEEECcCCc--------------------------------------------CCcc---cCCcCcCCEEECCCCccc-
Confidence 4444444433 2222 123356777888776543
Q ss_pred ccccccccccCcceEeeccCCCccccccccCCCCcccEEEEcCCCCCc--cccccCCCCCCcceEEecCCCCCcccCCCC
Q 039990 947 VLTSECQLSVAVEELTIDSCSNIESIAERFHDDACLRSIRLSYCKNLK--SLPKGLNNLSHLHRRSIQGCHNLVSLPEDA 1024 (1217)
Q Consensus 947 ~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~L~~c~~l~--~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~ 1024 (1217)
.+|.. +++|++|++++| .+..+|. .+++|++|++++|.... .+|.++..+ +.+.....+|.
T Consensus 331 ~lp~~---~~~L~~L~L~~N-~l~~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L--------~~n~~~~~i~~-- 393 (454)
T 1jl5_A 331 ELPAL---PPRLERLIASFN-HLAEVPE---LPQNLKQLHVEYNPLREFPDIPESVEDL--------RMNSHLAEVPE-- 393 (454)
T ss_dssp CCCCC---CTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEE--------ECCC---------
T ss_pred ccccc---CCcCCEEECCCC-ccccccc---hhhhccEEECCCCCCCcCCCChHHHHhh--------hhccccccccc--
Confidence 34432 467888888876 4456666 36788888888865443 444444322 22333444443
Q ss_pred CCCCcceEEEccCcCcccCCCCCCCCCcceEeeccCCCc
Q 039990 1025 LPSNVVDVSIEDCDKLKAPLPTGKLSSLQLLTLIECPGI 1063 (1217)
Q Consensus 1025 ~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~c~~l 1063 (1217)
.+++|+.|++++|.....+ . --++|+.|.+.+|...
T Consensus 394 ~~~~L~~L~ls~N~l~~~~-~--iP~sl~~L~~~~~~~~ 429 (454)
T 1jl5_A 394 LPQNLKQLHVETNPLREFP-D--IPESVEDLRMNSERVV 429 (454)
T ss_dssp ---------------------------------------
T ss_pred ccCcCCEEECCCCcCCccc-c--chhhHhheeCcCcccC
Confidence 2456777777776644320 0 1135666677665433
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.89 E-value=3.5e-22 Score=233.62 Aligned_cols=79 Identities=23% Similarity=0.238 Sum_probs=58.7
Q ss_pred cCCCCcceEEEcCCCCcccccccccccccChhhhcccccCcEEecccccccccccccccccccccEEeecCCccccccCC
Q 039990 478 LPKCKKLRVLSLEKDNIAEVPISIGCLKCLPEAITSLFNLEILILSYCWCLLKLPSSIGNLVNLHHLDIEGADRLCELPL 557 (1217)
Q Consensus 478 ~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~ 557 (1217)
+..+++|++|+|++|.++.+| .++.+++|++|++++| .+..+| ++.+++|++|++++| .+..+|
T Consensus 38 ~~~l~~L~~L~Ls~n~l~~~~-----------~l~~l~~L~~L~Ls~n-~l~~~~--~~~l~~L~~L~Ls~N-~l~~~~- 101 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSITDMT-----------GIEKLTGLTKLICTSN-NITTLD--LSQNTNLTYLACDSN-KLTNLD- 101 (457)
T ss_dssp HHHHTTCCEEECCSSCCCCCT-----------TGGGCTTCSEEECCSS-CCSCCC--CTTCTTCSEEECCSS-CCSCCC-
T ss_pred hhHcCCCCEEEccCCCcccCh-----------hhcccCCCCEEEccCC-cCCeEc--cccCCCCCEEECcCC-CCceee-
Confidence 556778888888888887654 3777888888888888 677776 788888888888888 676664
Q ss_pred CCccCccccccccccc
Q 039990 558 GMKELKCLRTLTDFIN 573 (1217)
Q Consensus 558 ~i~~L~~L~~L~~~~n 573 (1217)
++++++|++|++..|
T Consensus 102 -~~~l~~L~~L~L~~N 116 (457)
T 3bz5_A 102 -VTPLTKLTYLNCDTN 116 (457)
T ss_dssp -CTTCTTCCEEECCSS
T ss_pred -cCCCCcCCEEECCCC
Confidence 666666666655443
No 32
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.89 E-value=9e-22 Score=233.13 Aligned_cols=305 Identities=13% Similarity=0.110 Sum_probs=155.3
Q ss_pred ccccccccCCCcccEEEEeccCCcccccc-cCCCCCccEEEecccCcccccccCCCCCCCCCcccccccCCCCCcccccc
Q 039990 832 SLTDGMIHNNVRLEVLRIIGCHSLKSIAR-EHLPSSLKEIELEYCEIQQCVLDDGENSCASPSVLEKNINNSSSSTYLDL 910 (1217)
Q Consensus 832 ~l~~~~~~~l~~L~~L~l~~c~~l~~i~~-~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 910 (1217)
.++...+.++++|++|++++|......+. ....++|++|++++|...+.++..
T Consensus 69 ~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-------------------------- 122 (455)
T 3v47_A 69 VIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSG-------------------------- 122 (455)
T ss_dssp EECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHS--------------------------
T ss_pred eECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCc--------------------------
Confidence 45555578888899999888654332221 233467777777777643221111
Q ss_pred cceEeccCCCCcccccCCCCCCCccEEeecCCCCCcccccc-cccccCcceEeeccCCCccccccccCCC--CcccEEEE
Q 039990 911 ESLSVQSCPSLTRLWSSGRLPVTLKCIQIEDCSNFKVLTSE-CQLSVAVEELTIDSCSNIESIAERFHDD--ACLRSIRL 987 (1217)
Q Consensus 911 ~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~~~~l~~l~~~~~~l--~~L~~L~L 987 (1217)
......++|+.|++++|......|.. +.++++|++|++++|......+..+..+ .+|+.|++
T Consensus 123 ---------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l 187 (455)
T 3v47_A 123 ---------------NFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL 187 (455)
T ss_dssp ---------------STTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEEC
T ss_pred ---------------ccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccc
Confidence 00122234555555554443333332 4455555555555544333333333222 45555555
Q ss_pred cCCCCCccccc---------cCCCCCCcceEEecCCCCCcccCC----CCCCCCcceEEEccCcCcccCCCC--------
Q 039990 988 SYCKNLKSLPK---------GLNNLSHLHRRSIQGCHNLVSLPE----DALPSNVVDVSIEDCDKLKAPLPT-------- 1046 (1217)
Q Consensus 988 ~~c~~l~~l~~---------~l~~l~~L~~L~l~~c~~l~~l~~----~~~~~~L~~L~l~~~~~l~~~~~~-------- 1046 (1217)
++|.. ..++. .+..+++|+.|++++|......+. ....++|+.|++++|.........
T Consensus 188 ~~n~l-~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 266 (455)
T 3v47_A 188 SSITL-QDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDN 266 (455)
T ss_dssp TTCBC-TTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCT
T ss_pred ccCcc-cccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcc
Confidence 55332 22211 122344555555555432222211 001134555555554332221111
Q ss_pred -----CCCCCcceEeeccCCCccccCCC-CCCCCCCeEEecCCCCCccccccccccCCcccceeeccCCCcccccccccc
Q 039990 1047 -----GKLSSLQLLTLIECPGIVFFPEE-GLSTNLTDLEISGDNIYKPLVKWGFDKFSSLRKHCINRCSDAVSFPEVEKG 1120 (1217)
Q Consensus 1047 -----~~l~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~ 1120 (1217)
...++|++|++++|......+.. ..+++|++|++++|......+. .+..+++|++|++++|.. ..++. ..
T Consensus 267 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l-~~~~~--~~ 342 (455)
T 3v47_A 267 FTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDN-AFWGLTHLLKLNLSQNFL-GSIDS--RM 342 (455)
T ss_dssp TTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCC-CEECG--GG
T ss_pred cccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChh-HhcCcccCCEEECCCCcc-CCcCh--hH
Confidence 12356777777765544333332 4466777777777665543332 466677777777777543 33322 24
Q ss_pred CCCCCCcceEeecCCCCCcccCccccCCcccccccccccccCcccCCCC--CCCCccceEeccCCc
Q 039990 1121 VILPTSLTLIRISDFPKLERLSSKGFHYLLSLEQLKVSSCPNFTSFPEA--GFPSSLLFLDIQGCP 1184 (1217)
Q Consensus 1121 ~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~lp~~--~~~~sL~~L~l~~c~ 1184 (1217)
+..+++|++|++++ +.+..+++..+.++++|++|++++| .++.+|.. ..+++|+.|++++|+
T Consensus 343 ~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 343 FENLDKLEVLDLSY-NHIRALGDQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp GTTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred hcCcccCCEEECCC-CcccccChhhccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCC
Confidence 45567777777776 4566664466667777777777776 56666653 345677777776654
No 33
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.89 E-value=6.5e-22 Score=234.36 Aligned_cols=84 Identities=19% Similarity=0.187 Sum_probs=67.3
Q ss_pred CcceEEEcCCCCcccccccccccccChhhhcccccCcEEecccccccccc-cccccccccccEEeecCCcccccc-CCCC
Q 039990 482 KKLRVLSLEKDNIAEVPISIGCLKCLPEAITSLFNLEILILSYCWCLLKL-PSSIGNLVNLHHLDIEGADRLCEL-PLGM 559 (1217)
Q Consensus 482 ~~Lr~L~L~~~~i~~lp~~i~~L~~lp~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~l-p~~i 559 (1217)
++|++|+|++|.++.++ |.+|+++++|++|++++|.....+ |..|.++++|++|++++| .+..+ |..+
T Consensus 30 ~~l~~L~Ls~n~i~~~~---------~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~ 99 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELN---------ETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN-QFLQLETGAF 99 (455)
T ss_dssp TTCCEEECCSSCCCEEC---------TTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC-TTCEECTTTT
T ss_pred CccCEEEecCCccCcCC---------hhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC-ccCccChhhc
Confidence 58999999999998764 577899999999999998443355 456899999999999999 56665 6778
Q ss_pred ccCccccccccccccc
Q 039990 560 KELKCLRTLTDFINVI 575 (1217)
Q Consensus 560 ~~L~~L~~L~~~~n~~ 575 (1217)
+++++|++|++..|..
T Consensus 100 ~~l~~L~~L~L~~n~l 115 (455)
T 3v47_A 100 NGLANLEVLTLTQCNL 115 (455)
T ss_dssp TTCTTCCEEECTTSCC
T ss_pred cCcccCCEEeCCCCCC
Confidence 8888888887765543
No 34
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.88 E-value=1.8e-21 Score=227.47 Aligned_cols=61 Identities=18% Similarity=0.117 Sum_probs=49.9
Q ss_pred hhhhcccccCcEEecccccccccccccccccccccEEeecCCccccccCCCCccCccccccccccc
Q 039990 508 PEAITSLFNLEILILSYCWCLLKLPSSIGNLVNLHHLDIEGADRLCELPLGMKELKCLRTLTDFIN 573 (1217)
Q Consensus 508 p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~~~~n 573 (1217)
+.+++++++|++|++++| .+..+| +++.+++|++|++++| .+..+| ++.+++|++|++..|
T Consensus 35 ~~~~~~l~~L~~L~Ls~n-~l~~~~-~l~~l~~L~~L~Ls~n-~l~~~~--~~~l~~L~~L~Ls~N 95 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHNS-SITDMT-GIEKLTGLTKLICTSN-NITTLD--LSQNTNLTYLACDSN 95 (457)
T ss_dssp EEEHHHHTTCCEEECCSS-CCCCCT-TGGGCTTCSEEECCSS-CCSCCC--CTTCTTCSEEECCSS
T ss_pred ccChhHcCCCCEEEccCC-CcccCh-hhcccCCCCEEEccCC-cCCeEc--cccCCCCCEEECcCC
Confidence 446888999999999998 788888 6999999999999999 787775 677777777665543
No 35
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.88 E-value=3.2e-21 Score=228.10 Aligned_cols=77 Identities=8% Similarity=0.078 Sum_probs=42.8
Q ss_pred CccEEeecCCCCCcccccccccccCcceEeeccCCCccccccccCCCCcccEEEEcCCCCCccccccCCCCCCcceEEec
Q 039990 933 TLKCIQIEDCSNFKVLTSECQLSVAVEELTIDSCSNIESIAERFHDDACLRSIRLSYCKNLKSLPKGLNNLSHLHRRSIQ 1012 (1217)
Q Consensus 933 ~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~l~ 1012 (1217)
+|+.|++++|......+ +..+++|+.|++++|. +..++ .+..+++|+.|++++|......| +..+++|+.|+++
T Consensus 310 ~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~ 383 (466)
T 1o6v_A 310 NLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNK-VSDVS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLN 383 (466)
T ss_dssp TCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSC-CCCCG-GGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECC
T ss_pred CCCEEECcCCcCCCchh--hccCccCCEeECCCCc-cCCch-hhccCCCCCEEeCCCCccCccch--hhcCCCCCEEecc
Confidence 55566666654433322 4556666666666653 33332 34456667777776654333333 5666667777766
Q ss_pred CCC
Q 039990 1013 GCH 1015 (1217)
Q Consensus 1013 ~c~ 1015 (1217)
+|+
T Consensus 384 ~n~ 386 (466)
T 1o6v_A 384 DQA 386 (466)
T ss_dssp CEE
T ss_pred CCc
Confidence 653
No 36
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.87 E-value=4.7e-21 Score=226.71 Aligned_cols=347 Identities=15% Similarity=0.116 Sum_probs=235.6
Q ss_pred CCCccEEEEccCCCcc-ccCCCCCcccEEEEccCCCccccCCCCCCCccceeeccccccccccccccccccceeeecccc
Q 039990 748 LPSLEEIVIAGCMHLA-VSLPSLPALCTMEIDGCKRLVCDGPSESKSLNEMALCNISKFENWSMENLVRFGFYSVDTSKD 826 (1217)
Q Consensus 748 l~~L~~L~l~~c~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~l~~ 826 (1217)
+++++.|++.+|.... ..+..+++|++|++++|....... +..+.+|+.|.+++
T Consensus 45 l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~-------------------------~~~l~~L~~L~l~~ 99 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP-------------------------LKNLTKLVDILMNN 99 (466)
T ss_dssp HHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-------------------------GTTCTTCCEEECCS
T ss_pred hccccEEecCCCCCccCcchhhhcCCCEEECCCCccCCchh-------------------------hhccccCCEEECCC
Confidence 4677888887764322 123345666666666554332222 33344555555555
Q ss_pred CCCccccccccccCCCcccEEEEeccCCcccccccCCCCCccEEEecccCcccccccCCCCCCCCCcccccccCCCCCcc
Q 039990 827 CNALTSLTDGMIHNNVRLEVLRIIGCHSLKSIAREHLPSSLKEIELEYCEIQQCVLDDGENSCASPSVLEKNINNSSSST 906 (1217)
Q Consensus 827 c~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 906 (1217)
| .++.++. +.++++|++|++++| .+..++.....++|++|++++|.... ++. ...
T Consensus 100 n-~l~~~~~--~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~l~~n~l~~-~~~--------------------~~~ 154 (466)
T 1o6v_A 100 N-QIADITP--LANLTNLTGLTLFNN-QITDIDPLKNLTNLNRLELSSNTISD-ISA--------------------LSG 154 (466)
T ss_dssp S-CCCCCGG--GTTCTTCCEEECCSS-CCCCCGGGTTCTTCSEEEEEEEEECC-CGG--------------------GTT
T ss_pred C-ccccChh--hcCCCCCCEEECCCC-CCCCChHHcCCCCCCEEECCCCccCC-Chh--------------------hcc
Confidence 3 4555554 788999999999987 46666666667899999999986432 110 112
Q ss_pred cccccceEeccCCCCcccccCCCCCCCccEEeecCCCCCcccccccccccCcceEeeccCCCccccccccCCCCcccEEE
Q 039990 907 YLDLESLSVQSCPSLTRLWSSGRLPVTLKCIQIEDCSNFKVLTSECQLSVAVEELTIDSCSNIESIAERFHDDACLRSIR 986 (1217)
Q Consensus 907 ~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~ 986 (1217)
+++|+.|.+.+ .+..+.+ ...+++|+.|++++|.. ..++ .+..+++|++|++++|......+ +..+++|++|+
T Consensus 155 l~~L~~L~l~~--~~~~~~~-~~~l~~L~~L~l~~n~l-~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ 227 (466)
T 1o6v_A 155 LTSLQQLSFGN--QVTDLKP-LANLTTLERLDISSNKV-SDIS-VLAKLTNLESLIATNNQISDITP--LGILTNLDELS 227 (466)
T ss_dssp CTTCSEEEEEE--SCCCCGG-GTTCTTCCEEECCSSCC-CCCG-GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEE
T ss_pred CCcccEeecCC--cccCchh-hccCCCCCEEECcCCcC-CCCh-hhccCCCCCEEEecCCccccccc--ccccCCCCEEE
Confidence 45688888863 3333323 34456899999998764 3333 46788899999999876444333 44588999999
Q ss_pred EcCCCCCccccccCCCCCCcceEEecCCCCCcccCCCCCCCCcceEEEccCcCcccCCCCCCCCCcceEeeccCCCcccc
Q 039990 987 LSYCKNLKSLPKGLNNLSHLHRRSIQGCHNLVSLPEDALPSNVVDVSIEDCDKLKAPLPTGKLSSLQLLTLIECPGIVFF 1066 (1217)
Q Consensus 987 L~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~c~~l~~~ 1066 (1217)
+++|. +..++ .+..+++|+.|++++|. ++.++.....++|+.|++++|..... .++..+++|++|++++|. +..+
T Consensus 228 l~~n~-l~~~~-~l~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~L~~n~-l~~~ 302 (466)
T 1o6v_A 228 LNGNQ-LKDIG-TLASLTNLTDLDLANNQ-ISNLAPLSGLTKLTELKLGANQISNI-SPLAGLTALTNLELNENQ-LEDI 302 (466)
T ss_dssp CCSSC-CCCCG-GGGGCTTCSEEECCSSC-CCCCGGGTTCTTCSEEECCSSCCCCC-GGGTTCTTCSEEECCSSC-CSCC
T ss_pred CCCCC-cccch-hhhcCCCCCEEECCCCc-cccchhhhcCCCCCEEECCCCccCcc-ccccCCCccCeEEcCCCc-ccCc
Confidence 99865 55553 57788999999999875 55554434457899999998876555 336788899999998865 3344
Q ss_pred CCCCCCCCCCeEEecCCCCCccccccccccCCcccceeeccCCCccccccccccCCCCCCcceEeecCCCCCcccCcccc
Q 039990 1067 PEEGLSTNLTDLEISGDNIYKPLVKWGFDKFSSLRKHCINRCSDAVSFPEVEKGVILPTSLTLIRISDFPKLERLSSKGF 1146 (1217)
Q Consensus 1067 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~ 1146 (1217)
+....+++|++|++++|...+..+ +..+++|++|++++|. +..++ .+..+++|+.|++++| .+..+++ +
T Consensus 303 ~~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~n~-l~~~~----~l~~l~~L~~L~l~~n-~l~~~~~--~ 371 (466)
T 1o6v_A 303 SPISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFYNNK-VSDVS----SLANLTNINWLSAGHN-QISDLTP--L 371 (466)
T ss_dssp GGGGGCTTCSEEECCSSCCSCCGG---GGGCTTCCEEECCSSC-CCCCG----GGTTCTTCCEEECCSS-CCCBCGG--G
T ss_pred hhhcCCCCCCEEECcCCcCCCchh---hccCccCCEeECCCCc-cCCch----hhccCCCCCEEeCCCC-ccCccch--h
Confidence 444567889999999987765543 5788899999999874 44443 3567788999999884 5666652 7
Q ss_pred CCcccccccccccccCcccCCC
Q 039990 1147 HYLLSLEQLKVSSCPNFTSFPE 1168 (1217)
Q Consensus 1147 ~~l~~L~~L~l~~c~~l~~lp~ 1168 (1217)
..+++|+.|++++| .+..+|.
T Consensus 372 ~~l~~L~~L~l~~n-~~~~~p~ 392 (466)
T 1o6v_A 372 ANLTRITQLGLNDQ-AWTNAPV 392 (466)
T ss_dssp TTCTTCCEEECCCE-EEECCCB
T ss_pred hcCCCCCEEeccCC-cccCCch
Confidence 88889999999988 5555553
No 37
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.86 E-value=1.4e-20 Score=213.79 Aligned_cols=126 Identities=15% Similarity=0.066 Sum_probs=57.7
Q ss_pred CCCCcceEeeccCCCccccCCCCCCCCCCeEEecCCCCCccccccccccCCcccceeeccCCCccccccccccCCCCCCc
Q 039990 1048 KLSSLQLLTLIECPGIVFFPEEGLSTNLTDLEISGDNIYKPLVKWGFDKFSSLRKHCINRCSDAVSFPEVEKGVILPTSL 1127 (1217)
Q Consensus 1048 ~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L 1127 (1217)
.+++|++|++++|. +..++....+++|++|++++|..... + .+..+++|++|++++|. +..++ .+..+++|
T Consensus 219 ~~~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~l~~~-~--~~~~l~~L~~L~l~~n~-l~~~~----~~~~l~~L 289 (347)
T 4fmz_A 219 NMTRLNSLKIGNNK-ITDLSPLANLSQLTWLEIGTNQISDI-N--AVKDLTKLKMLNVGSNQ-ISDIS----VLNNLSQL 289 (347)
T ss_dssp GCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSCCCCC-G--GGTTCTTCCEEECCSSC-CCCCG----GGGGCTTC
T ss_pred cCCcCCEEEccCCc-cCCCcchhcCCCCCEEECCCCccCCC-h--hHhcCCCcCEEEccCCc-cCCCh----hhcCCCCC
Confidence 34444444444432 22222223344455555555433321 1 24455555555555542 22222 22344555
Q ss_pred ceEeecCCCCCcccCccccCCcccccccccccccCcccCCCCCCCCccceEeccCCc
Q 039990 1128 TLIRISDFPKLERLSSKGFHYLLSLEQLKVSSCPNFTSFPEAGFPSSLLFLDIQGCP 1184 (1217)
Q Consensus 1128 ~~L~l~~c~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~sL~~L~l~~c~ 1184 (1217)
+.|++++| .+...+...+.++++|++|++++|+ ++.++....+++|+.|++++|+
T Consensus 290 ~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 290 NSLFLNNN-QLGNEDMEVIGGLTNLTTLFLSQNH-ITDIRPLASLSKMDSADFANQV 344 (347)
T ss_dssp SEEECCSS-CCCGGGHHHHHTCTTCSEEECCSSS-CCCCGGGGGCTTCSEESSSCC-
T ss_pred CEEECcCC-cCCCcChhHhhccccCCEEEccCCc-cccccChhhhhccceeehhhhc
Confidence 55555553 4444433445555666666666663 4444333344566666666554
No 38
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.85 E-value=4.3e-20 Score=219.77 Aligned_cols=246 Identities=16% Similarity=0.161 Sum_probs=125.9
Q ss_pred CCccEEeecCCCCCcccccccccccCcceEeeccCCCccccccccCCCCcccEEEEcCCCCCccccccCCCCCCcceEEe
Q 039990 932 VTLKCIQIEDCSNFKVLTSECQLSVAVEELTIDSCSNIESIAERFHDDACLRSIRLSYCKNLKSLPKGLNNLSHLHRRSI 1011 (1217)
Q Consensus 932 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~l 1011 (1217)
++|+.|++++|......+..+.++++|++|++++|......+..+..+++|++|++++|......+..+..+++|+.|++
T Consensus 80 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 159 (477)
T 2id5_A 80 FNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTL 159 (477)
T ss_dssp TTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEE
T ss_pred ccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEEC
Confidence 34555555554332222233445555555555555443333444445555555555554333333444555555555555
Q ss_pred cCCCCCcccCCC--CCCCCcceEEEccCcCcccC-CCCCCCCCcceEeeccCCCccccCCC-CCCCCCCeEEecCCCCCc
Q 039990 1012 QGCHNLVSLPED--ALPSNVVDVSIEDCDKLKAP-LPTGKLSSLQLLTLIECPGIVFFPEE-GLSTNLTDLEISGDNIYK 1087 (1217)
Q Consensus 1012 ~~c~~l~~l~~~--~~~~~L~~L~l~~~~~l~~~-~~~~~l~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~~~~~~ 1087 (1217)
++| .++.++.. ...++|+.|++++|.....+ ..+..+++|++|++++|+.+..++.. ....+|++|++++|...
T Consensus 160 ~~n-~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~- 237 (477)
T 2id5_A 160 EKC-NLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT- 237 (477)
T ss_dssp ESC-CCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC-
T ss_pred CCC-cCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccc-
Confidence 554 23333321 11245555555555433331 12355666666666666655555444 22346666666666444
Q ss_pred cccccccccCCcccceeeccCCCccccccccccCCCCCCcceEeecCCCCCcccCccccCCcccccccccccccCcccCC
Q 039990 1088 PLVKWGFDKFSSLRKHCINRCSDAVSFPEVEKGVILPTSLTLIRISDFPKLERLSSKGFHYLLSLEQLKVSSCPNFTSFP 1167 (1217)
Q Consensus 1088 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~lp 1167 (1217)
.++...+..+++|++|++++|. +..++. ..+..+++|+.|++++ +.+..+++..+.++++|+.|++++| .++.+|
T Consensus 238 ~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~--~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~ 312 (477)
T 2id5_A 238 AVPYLAVRHLVYLRFLNLSYNP-ISTIEG--SMLHELLRLQEIQLVG-GQLAVVEPYAFRGLNYLRVLNVSGN-QLTTLE 312 (477)
T ss_dssp SCCHHHHTTCTTCCEEECCSSC-CCEECT--TSCTTCTTCCEEECCS-SCCSEECTTTBTTCTTCCEEECCSS-CCSCCC
T ss_pred ccCHHHhcCccccCeeECCCCc-CCccCh--hhccccccCCEEECCC-CccceECHHHhcCcccCCEEECCCC-cCceeC
Confidence 2332345566666666666654 333332 2344556666666666 4555554455666666666666666 555555
Q ss_pred CC--CCCCccceEeccCCc
Q 039990 1168 EA--GFPSSLLFLDIQGCP 1184 (1217)
Q Consensus 1168 ~~--~~~~sL~~L~l~~c~ 1184 (1217)
.. ..+++|+.|++++||
T Consensus 313 ~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 313 ESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp GGGBSCGGGCCEEECCSSC
T ss_pred HhHcCCCcccCEEEccCCC
Confidence 43 234566666666554
No 39
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.85 E-value=2.1e-20 Score=212.48 Aligned_cols=303 Identities=15% Similarity=0.122 Sum_probs=154.7
Q ss_pred ccccceeeeccccCCCccccccccccCCCcccEEEEeccCCcccccccCCCCCccEEEecccCcccccccCCCCCCCCCc
Q 039990 814 VRFGFYSVDTSKDCNALTSLTDGMIHNNVRLEVLRIIGCHSLKSIAREHLPSSLKEIELEYCEIQQCVLDDGENSCASPS 893 (1217)
Q Consensus 814 ~~~~~l~~L~l~~c~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~ 893 (1217)
..++.++.|.+.++ .++.++. +..+++|++|++++| .+..++.....++|++|++++|.... ++.
T Consensus 41 ~~l~~L~~L~l~~~-~i~~~~~--~~~~~~L~~L~l~~n-~i~~~~~~~~l~~L~~L~L~~n~i~~-~~~---------- 105 (347)
T 4fmz_A 41 EELESITKLVVAGE-KVASIQG--IEYLTNLEYLNLNGN-QITDISPLSNLVKLTNLYIGTNKITD-ISA---------- 105 (347)
T ss_dssp HHHTTCSEEECCSS-CCCCCTT--GGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSCCCC-CGG----------
T ss_pred hhcccccEEEEeCC-ccccchh--hhhcCCccEEEccCC-ccccchhhhcCCcCCEEEccCCcccC-chH----------
Confidence 34666677777664 3444443 566777777777765 34445444445666666666664221 110
Q ss_pred ccccccCCCCCcccccccceEeccCCCCcccccCCCCCCCccEEeecCCCCCcccccccccccCcceEeeccCCCccccc
Q 039990 894 VLEKNINNSSSSTYLDLESLSVQSCPSLTRLWSSGRLPVTLKCIQIEDCSNFKVLTSECQLSVAVEELTIDSCSNIESIA 973 (1217)
Q Consensus 894 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~ 973 (1217)
...+++|++|+++++. +..++. ...+++|+.|++++|.....++. +..+++|++|++++|.. ..++
T Consensus 106 ----------~~~l~~L~~L~l~~n~-i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~-~~~~ 171 (347)
T 4fmz_A 106 ----------LQNLTNLRELYLNEDN-ISDISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKV-KDVT 171 (347)
T ss_dssp ----------GTTCTTCSEEECTTSC-CCCCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCC-CCCG
T ss_pred ----------HcCCCcCCEEECcCCc-ccCchh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCc-CCch
Confidence 1123446666665543 333322 23334566666666555444433 55556666666665532 2222
Q ss_pred cccCCCCcccEEEEcCCCCCccccccCCCCCCcceEEecCCCCCcccCCCCCCCCcceEEEccCcCcccCCCCCCCCCcc
Q 039990 974 ERFHDDACLRSIRLSYCKNLKSLPKGLNNLSHLHRRSIQGCHNLVSLPEDALPSNVVDVSIEDCDKLKAPLPTGKLSSLQ 1053 (1217)
Q Consensus 974 ~~~~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~ 1053 (1217)
. +..+++|++|++++|. +..++. +..+++|+.|++++|. ++.++.....++|++|++++|..... .++..+++|+
T Consensus 172 ~-~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~l~~L~ 246 (347)
T 4fmz_A 172 P-IANLTDLYSLSLNYNQ-IEDISP-LASLTSLHYFTAYVNQ-ITDITPVANMTRLNSLKIGNNKITDL-SPLANLSQLT 246 (347)
T ss_dssp G-GGGCTTCSEEECTTSC-CCCCGG-GGGCTTCCEEECCSSC-CCCCGGGGGCTTCCEEECCSSCCCCC-GGGTTCTTCC
T ss_pred h-hccCCCCCEEEccCCc-cccccc-ccCCCccceeecccCC-CCCCchhhcCCcCCEEEccCCccCCC-cchhcCCCCC
Confidence 2 3345566666666643 333433 5555666666666542 33333222234566666666554433 2245556666
Q ss_pred eEeeccCCCccccCCCCCCCCCCeEEecCCCCCccccccccccCCcccceeeccCCCccccccccccCCCCCCcceEeec
Q 039990 1054 LLTLIECPGIVFFPEEGLSTNLTDLEISGDNIYKPLVKWGFDKFSSLRKHCINRCSDAVSFPEVEKGVILPTSLTLIRIS 1133 (1217)
Q Consensus 1054 ~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~ 1133 (1217)
+|++++| .+..++....+++|++|++++|..... + .+..+++|++|++++|......+. .+..+++|+.|+++
T Consensus 247 ~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n~l~~~-~--~~~~l~~L~~L~L~~n~l~~~~~~---~l~~l~~L~~L~L~ 319 (347)
T 4fmz_A 247 WLEIGTN-QISDINAVKDLTKLKMLNVGSNQISDI-S--VLNNLSQLNSLFLNNNQLGNEDME---VIGGLTNLTTLFLS 319 (347)
T ss_dssp EEECCSS-CCCCCGGGTTCTTCCEEECCSSCCCCC-G--GGGGCTTCSEEECCSSCCCGGGHH---HHHTCTTCSEEECC
T ss_pred EEECCCC-ccCCChhHhcCCCcCEEEccCCccCCC-h--hhcCCCCCCEEECcCCcCCCcChh---HhhccccCCEEEcc
Confidence 6666654 233333334455666666666544432 1 345566666666666543322222 23345566666666
Q ss_pred CCCCCcccCccccCCcccccccccccc
Q 039990 1134 DFPKLERLSSKGFHYLLSLEQLKVSSC 1160 (1217)
Q Consensus 1134 ~c~~l~~l~~~~~~~l~~L~~L~l~~c 1160 (1217)
+| .+..+++ +..+++|++|++++|
T Consensus 320 ~n-~l~~~~~--~~~l~~L~~L~l~~N 343 (347)
T 4fmz_A 320 QN-HITDIRP--LASLSKMDSADFANQ 343 (347)
T ss_dssp SS-SCCCCGG--GGGCTTCSEESSSCC
T ss_pred CC-ccccccC--hhhhhccceeehhhh
Confidence 63 3555442 555566666666665
No 40
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.84 E-value=4e-20 Score=213.51 Aligned_cols=301 Identities=14% Similarity=0.131 Sum_probs=205.6
Q ss_pred eeeeccccCCCccccccccccCCCcccEEEEeccCCccccccc--CCCCCccEEEecccCcccccccCCCCCCCCCcccc
Q 039990 819 YSVDTSKDCNALTSLTDGMIHNNVRLEVLRIIGCHSLKSIARE--HLPSSLKEIELEYCEIQQCVLDDGENSCASPSVLE 896 (1217)
Q Consensus 819 l~~L~l~~c~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~i~~~--~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~ 896 (1217)
++.+.+.+ +.++.+|..++..+++|++|++++|. +..++.. ...++|++|++++|...
T Consensus 47 l~~l~l~~-~~l~~l~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~------------------ 106 (390)
T 3o6n_A 47 QKIVTFKN-STMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIR------------------ 106 (390)
T ss_dssp CSEEEEES-CEESEECTHHHHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCC------------------
T ss_pred ceEEEecC-CchhhCChhHhcccccCcEEECCCCc-ccccChhhccCCCCcCEEECCCCCCC------------------
Confidence 33333333 34666777667777778888887754 4444322 22355555555554421
Q ss_pred cccCCCCCcccccccceEeccCCCCcccc-cCCCCCCCccEEeecCCCCCccccc-ccccccCcceEeeccCCCcccccc
Q 039990 897 KNINNSSSSTYLDLESLSVQSCPSLTRLW-SSGRLPVTLKCIQIEDCSNFKVLTS-ECQLSVAVEELTIDSCSNIESIAE 974 (1217)
Q Consensus 897 ~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~l~~l~~ 974 (1217)
.++ .....+++|+.|++++|... .+|. .+..+++|++|++++|......+.
T Consensus 107 --------------------------~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~ 159 (390)
T 3o6n_A 107 --------------------------YLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDD 159 (390)
T ss_dssp --------------------------CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTT
T ss_pred --------------------------cCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChh
Confidence 111 11233456777888776544 4443 357788888888888755444455
Q ss_pred ccCCCCcccEEEEcCCCCCccccccCCCCCCcceEEecCCCCCcccCCCCCCCCcceEEEccCcCcccCCCCCCCCCcce
Q 039990 975 RFHDDACLRSIRLSYCKNLKSLPKGLNNLSHLHRRSIQGCHNLVSLPEDALPSNVVDVSIEDCDKLKAPLPTGKLSSLQL 1054 (1217)
Q Consensus 975 ~~~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~ 1054 (1217)
.+..+++|++|++++|. +..+ .+..+++|+.|++++| .++.++ .+++|+.|++++|.....+ ....++|++
T Consensus 160 ~~~~l~~L~~L~l~~n~-l~~~--~~~~l~~L~~L~l~~n-~l~~~~---~~~~L~~L~l~~n~l~~~~--~~~~~~L~~ 230 (390)
T 3o6n_A 160 TFQATTSLQNLQLSSNR-LTHV--DLSLIPSLFHANVSYN-LLSTLA---IPIAVEELDASHNSINVVR--GPVNVELTI 230 (390)
T ss_dssp TTSSCTTCCEEECCSSC-CSBC--CGGGCTTCSEEECCSS-CCSEEE---CCSSCSEEECCSSCCCEEE--CCCCSSCCE
T ss_pred hccCCCCCCEEECCCCc-CCcc--ccccccccceeecccc-cccccC---CCCcceEEECCCCeeeecc--ccccccccE
Confidence 56678888888888854 4444 3556788888888875 455543 3457888888888755542 244678999
Q ss_pred EeeccCCCccccCCCCCCCCCCeEEecCCCCCccccccccccCCcccceeeccCCCccccccccccCCCCCCcceEeecC
Q 039990 1055 LTLIECPGIVFFPEEGLSTNLTDLEISGDNIYKPLVKWGFDKFSSLRKHCINRCSDAVSFPEVEKGVILPTSLTLIRISD 1134 (1217)
Q Consensus 1055 L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~ 1134 (1217)
|++++|. +...+....+++|++|++++|......+. .+..+++|++|++++|. +..++. .+..+++|++|++++
T Consensus 231 L~l~~n~-l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~-l~~~~~---~~~~l~~L~~L~L~~ 304 (390)
T 3o6n_A 231 LKLQHNN-LTDTAWLLNYPGLVEVDLSYNELEKIMYH-PFVKMQRLERLYISNNR-LVALNL---YGQPIPTLKVLDLSH 304 (390)
T ss_dssp EECCSSC-CCCCGGGGGCTTCSEEECCSSCCCEEESG-GGTTCSSCCEEECCSSC-CCEEEC---SSSCCTTCCEEECCS
T ss_pred EECCCCC-CcccHHHcCCCCccEEECCCCcCCCcChh-HccccccCCEEECCCCc-CcccCc---ccCCCCCCCEEECCC
Confidence 9998864 33444445678999999999877765444 68899999999999964 555654 335679999999999
Q ss_pred CCCCcccCccccCCcccccccccccccCcccCCCCCCCCccceEeccCCcc
Q 039990 1135 FPKLERLSSKGFHYLLSLEQLKVSSCPNFTSFPEAGFPSSLLFLDIQGCPL 1185 (1217)
Q Consensus 1135 c~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~sL~~L~l~~c~~ 1185 (1217)
+.+..+| ..+..+++|++|++++| .++.++. ..+++|+.|++++|+-
T Consensus 305 -n~l~~~~-~~~~~l~~L~~L~L~~N-~i~~~~~-~~~~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 305 -NHLLHVE-RNQPQFDRLENLYLDHN-SIVTLKL-STHHTLKNLTLSHNDW 351 (390)
T ss_dssp -SCCCCCG-GGHHHHTTCSEEECCSS-CCCCCCC-CTTCCCSEEECCSSCE
T ss_pred -CcceecC-ccccccCcCCEEECCCC-ccceeCc-hhhccCCEEEcCCCCc
Confidence 5888888 56788999999999999 6788764 4568999999999873
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.83 E-value=1.2e-19 Score=221.46 Aligned_cols=294 Identities=13% Similarity=0.121 Sum_probs=188.8
Q ss_pred CCccccccccccCCCcccEEEEeccCCcccccc--cCCCCCccEEEecccCcccccccCCCCCCCCCcccccccCCCCCc
Q 039990 828 NALTSLTDGMIHNNVRLEVLRIIGCHSLKSIAR--EHLPSSLKEIELEYCEIQQCVLDDGENSCASPSVLEKNINNSSSS 905 (1217)
Q Consensus 828 ~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~i~~--~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 905 (1217)
+.++.+|..++.++++|+.|++++|. +..++. ....++|+.|++++|....
T Consensus 61 ~~l~~lp~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~-------------------------- 113 (597)
T 3oja_B 61 STMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIRY-------------------------- 113 (597)
T ss_dssp CEESEECTHHHHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCC--------------------------
T ss_pred CCCCCcCHHHHccCCCCcEEECCCCC-CCCCChHHhcCCCCCCEEECCCCcCCC--------------------------
Confidence 45667777777778888888888754 444432 2233556666655554221
Q ss_pred ccccccceEeccCCCCccccc-CCCCCCCccEEeecCCCCCcccccccccccCcceEeeccCCCccccccccCCCCcccE
Q 039990 906 TYLDLESLSVQSCPSLTRLWS-SGRLPVTLKCIQIEDCSNFKVLTSECQLSVAVEELTIDSCSNIESIAERFHDDACLRS 984 (1217)
Q Consensus 906 ~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~ 984 (1217)
+++ ....+++|+.|++++|......+..+.++++|++|++++|......|..+..+++|++
T Consensus 114 ------------------~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 175 (597)
T 3oja_B 114 ------------------LPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQN 175 (597)
T ss_dssp ------------------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCE
T ss_pred ------------------CCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcE
Confidence 111 1233346777777776444333334567777777777776554444555666777777
Q ss_pred EEEcCCCCCccccccCCCCCCcceEEecCCCCCcccCCCCCCCCcceEEEccCcCcccCCCCCCCCCcceEeeccCCCcc
Q 039990 985 IRLSYCKNLKSLPKGLNNLSHLHRRSIQGCHNLVSLPEDALPSNVVDVSIEDCDKLKAPLPTGKLSSLQLLTLIECPGIV 1064 (1217)
Q Consensus 985 L~L~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~c~~l~ 1064 (1217)
|++++|. +..++ +..+++|+.|++++| .++.++ .+++|+.|++++|.....+. ...++|+.|++++|. +.
T Consensus 176 L~L~~N~-l~~~~--~~~l~~L~~L~l~~n-~l~~l~---~~~~L~~L~ls~n~l~~~~~--~~~~~L~~L~L~~n~-l~ 245 (597)
T 3oja_B 176 LQLSSNR-LTHVD--LSLIPSLFHANVSYN-LLSTLA---IPIAVEELDASHNSINVVRG--PVNVELTILKLQHNN-LT 245 (597)
T ss_dssp EECTTSC-CSBCC--GGGCTTCSEEECCSS-CCSEEE---CCTTCSEEECCSSCCCEEEC--SCCSCCCEEECCSSC-CC
T ss_pred EECcCCC-CCCcC--hhhhhhhhhhhcccC-cccccc---CCchhheeeccCCccccccc--ccCCCCCEEECCCCC-CC
Confidence 7777754 44442 455677777777775 344443 34577777777776544422 234678888888764 33
Q ss_pred ccCCCCCCCCCCeEEecCCCCCccccccccccCCcccceeeccCCCccccccccccCCCCCCcceEeecCCCCCcccCcc
Q 039990 1065 FFPEEGLSTNLTDLEISGDNIYKPLVKWGFDKFSSLRKHCINRCSDAVSFPEVEKGVILPTSLTLIRISDFPKLERLSSK 1144 (1217)
Q Consensus 1065 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~ 1144 (1217)
..+....+++|++|++++|......+. .|..+++|+.|+|++|. +..+|. .+..+++|+.|++++ |.+..+| .
T Consensus 246 ~~~~l~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~-l~~l~~---~~~~l~~L~~L~Ls~-N~l~~i~-~ 318 (597)
T 3oja_B 246 DTAWLLNYPGLVEVDLSYNELEKIMYH-PFVKMQRLERLYISNNR-LVALNL---YGQPIPTLKVLDLSH-NHLLHVE-R 318 (597)
T ss_dssp CCGGGGGCTTCSEEECCSSCCCEEESG-GGTTCSSCCEEECTTSC-CCEEEC---SSSCCTTCCEEECCS-SCCCCCG-G
T ss_pred CChhhccCCCCCEEECCCCccCCCCHH-HhcCccCCCEEECCCCC-CCCCCc---ccccCCCCcEEECCC-CCCCccC-c
Confidence 333335577888888888877655444 57788888888888864 445554 334568888888888 5777887 5
Q ss_pred ccCCcccccccccccccCcccCCCCCCCCccceEeccCCcc
Q 039990 1145 GFHYLLSLEQLKVSSCPNFTSFPEAGFPSSLLFLDIQGCPL 1185 (1217)
Q Consensus 1145 ~~~~l~~L~~L~l~~c~~l~~lp~~~~~~sL~~L~l~~c~~ 1185 (1217)
.+..+++|+.|++++| .+..+|. ..+++|+.|++++||-
T Consensus 319 ~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 319 NQPQFDRLENLYLDHN-SIVTLKL-STHHTLKNLTLSHNDW 357 (597)
T ss_dssp GHHHHTTCSEEECCSS-CCCCCCC-CTTCCCSEEECCSSCE
T ss_pred ccccCCCCCEEECCCC-CCCCcCh-hhcCCCCEEEeeCCCC
Confidence 6778888888888888 5666663 3467888888888763
No 42
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.83 E-value=3.7e-19 Score=211.65 Aligned_cols=200 Identities=17% Similarity=0.167 Sum_probs=105.3
Q ss_pred CCCCccEEeecCCCCCcccccccccccCcceEeeccCCCccccccccCCCCcccEEEEcCCCCCccccccCCCCCCcceE
Q 039990 930 LPVTLKCIQIEDCSNFKVLTSECQLSVAVEELTIDSCSNIESIAERFHDDACLRSIRLSYCKNLKSLPKGLNNLSHLHRR 1009 (1217)
Q Consensus 930 ~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L 1009 (1217)
.+++|+.|++++|......+..+.++++|++|++++|......+..+..+++|+.|++++|......+..+..+++|+.|
T Consensus 126 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L 205 (477)
T 2id5_A 126 DLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVL 205 (477)
T ss_dssp TCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEE
T ss_pred ccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCccccee
Confidence 33466666666665555555566666777777777654332223345556677777777755433334456667777777
Q ss_pred EecCCCCCcccCCCCCC-CCcceEEEccCcCcccCC-CCCCCCCcceEeeccCCCccccCCC--CCCCCCCeEEecCCCC
Q 039990 1010 SIQGCHNLVSLPEDALP-SNVVDVSIEDCDKLKAPL-PTGKLSSLQLLTLIECPGIVFFPEE--GLSTNLTDLEISGDNI 1085 (1217)
Q Consensus 1010 ~l~~c~~l~~l~~~~~~-~~L~~L~l~~~~~l~~~~-~~~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~~~~ 1085 (1217)
++++|+.+..++...+. .+|+.|++++|.....+. .+..+++|++|++++|. +..++.. ..+++|++|++++|..
T Consensus 206 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l 284 (477)
T 2id5_A 206 EISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP-ISTIEGSMLHELLRLQEIQLVGGQL 284 (477)
T ss_dssp EEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSC-CCEECTTSCTTCTTCCEEECCSSCC
T ss_pred eCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCc-CCccChhhccccccCCEEECCCCcc
Confidence 77776666666543222 356666666654333211 12455666666666543 2233222 2345555555555544
Q ss_pred CccccccccccCCcccceeeccCCCccccccccccCCCCCCcceEeecC
Q 039990 1086 YKPLVKWGFDKFSSLRKHCINRCSDAVSFPEVEKGVILPTSLTLIRISD 1134 (1217)
Q Consensus 1086 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~ 1134 (1217)
....+. .|..+++|+.|++++| .+..++. ..+..+++|+.|++++
T Consensus 285 ~~~~~~-~~~~l~~L~~L~L~~N-~l~~~~~--~~~~~l~~L~~L~l~~ 329 (477)
T 2id5_A 285 AVVEPY-AFRGLNYLRVLNVSGN-QLTTLEE--SVFHSVGNLETLILDS 329 (477)
T ss_dssp SEECTT-TBTTCTTCCEEECCSS-CCSCCCG--GGBSCGGGCCEEECCS
T ss_pred ceECHH-HhcCcccCCEEECCCC-cCceeCH--hHcCCCcccCEEEccC
Confidence 433222 4455555555555554 2333332 2333445555555555
No 43
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.81 E-value=6.2e-19 Score=203.52 Aligned_cols=282 Identities=11% Similarity=0.060 Sum_probs=220.6
Q ss_pred cccccceEeccCCCCccccc-CCCCCCCccEEeecCCCCCcccccccccccCcceEeeccCCCccccccc-cCCCCcccE
Q 039990 907 YLDLESLSVQSCPSLTRLWS-SGRLPVTLKCIQIEDCSNFKVLTSECQLSVAVEELTIDSCSNIESIAER-FHDDACLRS 984 (1217)
Q Consensus 907 ~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~-~~~l~~L~~ 984 (1217)
+++|+.|+++++. ++.+++ ....+++|+.|++++|......+..+.++++|++|++++| .+..+|.. +..+++|++
T Consensus 68 l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~ 145 (390)
T 3o6n_A 68 FRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTT 145 (390)
T ss_dssp CCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred cccCcEEECCCCc-ccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCC-ccCcCCHHHhcCCCCCcE
Confidence 4569999998875 454433 4566779999999998876666777899999999999997 45567665 467999999
Q ss_pred EEEcCCCCCccccccCCCCCCcceEEecCCCCCcccCCCCCCCCcceEEEccCcCcccCCCCCCCCCcceEeeccCCCcc
Q 039990 985 IRLSYCKNLKSLPKGLNNLSHLHRRSIQGCHNLVSLPEDALPSNVVDVSIEDCDKLKAPLPTGKLSSLQLLTLIECPGIV 1064 (1217)
Q Consensus 985 L~L~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~c~~l~ 1064 (1217)
|++++|......|..+..+++|+.|++++|. ++.++.. ..++|+.|++++|..... ...++|++|++++|. +.
T Consensus 146 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~-~l~~L~~L~l~~n~l~~~----~~~~~L~~L~l~~n~-l~ 218 (390)
T 3o6n_A 146 LSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVDLS-LIPSLFHANVSYNLLSTL----AIPIAVEELDASHNS-IN 218 (390)
T ss_dssp EECCSSCCCBCCTTTTSSCTTCCEEECCSSC-CSBCCGG-GCTTCSEEECCSSCCSEE----ECCSSCSEEECCSSC-CC
T ss_pred EECCCCccCccChhhccCCCCCCEEECCCCc-CCccccc-cccccceeeccccccccc----CCCCcceEEECCCCe-ee
Confidence 9999976554446678999999999999964 6666532 346899999999865443 345689999999965 44
Q ss_pred ccCCCCCCCCCCeEEecCCCCCccccccccccCCcccceeeccCCCccccccccccCCCCCCcceEeecCCCCCcccCcc
Q 039990 1065 FFPEEGLSTNLTDLEISGDNIYKPLVKWGFDKFSSLRKHCINRCSDAVSFPEVEKGVILPTSLTLIRISDFPKLERLSSK 1144 (1217)
Q Consensus 1065 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~ 1144 (1217)
.++. ..+++|++|++++|...... .+..+++|++|++++|......+. .+..+++|++|++++ +++..+| .
T Consensus 219 ~~~~-~~~~~L~~L~l~~n~l~~~~---~l~~l~~L~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~L~~-n~l~~~~-~ 289 (390)
T 3o6n_A 219 VVRG-PVNVELTILKLQHNNLTDTA---WLLNYPGLVEVDLSYNELEKIMYH---PFVKMQRLERLYISN-NRLVALN-L 289 (390)
T ss_dssp EEEC-CCCSSCCEEECCSSCCCCCG---GGGGCTTCSEEECCSSCCCEEESG---GGTTCSSCCEEECCS-SCCCEEE-C
T ss_pred eccc-cccccccEEECCCCCCcccH---HHcCCCCccEEECCCCcCCCcChh---HccccccCCEEECCC-CcCcccC-c
Confidence 4543 45689999999999877642 578999999999999865444444 566789999999999 7888888 5
Q ss_pred ccCCcccccccccccccCcccCCCC-CCCCccceEeccCCcchHHhhcCCCCCCCCcccccceEEECCeeee
Q 039990 1145 GFHYLLSLEQLKVSSCPNFTSFPEA-GFPSSLLFLDIQGCPLLENKFKKGKGQEWPKIAHIPSVLIGGKSIH 1215 (1217)
Q Consensus 1145 ~~~~l~~L~~L~l~~c~~l~~lp~~-~~~~sL~~L~l~~c~~l~~~~~~~~~~~~~~i~~i~~~~~~~~~~~ 1215 (1217)
.+..+++|++|++++| .++.+|.. ..+++|+.|++++|+- +. ......+.++.+++++|.++
T Consensus 290 ~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N~i-~~-------~~~~~~~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 290 YGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNSI-VT-------LKLSTHHTLKNLTLSHNDWD 352 (390)
T ss_dssp SSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSCC-CC-------CCCCTTCCCSEEECCSSCEE
T ss_pred ccCCCCCCCEEECCCC-cceecCccccccCcCCEEECCCCcc-ce-------eCchhhccCCEEEcCCCCcc
Confidence 6788999999999999 78888764 4468999999999973 21 12556678999999998875
No 44
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.80 E-value=1.3e-18 Score=212.33 Aligned_cols=282 Identities=11% Similarity=0.058 Sum_probs=222.6
Q ss_pred cccccceEeccCCCCccccc-CCCCCCCccEEeecCCCCCcccccccccccCcceEeeccCCCccccccc-cCCCCcccE
Q 039990 907 YLDLESLSVQSCPSLTRLWS-SGRLPVTLKCIQIEDCSNFKVLTSECQLSVAVEELTIDSCSNIESIAER-FHDDACLRS 984 (1217)
Q Consensus 907 ~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~-~~~l~~L~~ 984 (1217)
+++|+.|+++++. ++.+++ ....+++|+.|++++|......+..+.++++|++|++++|. +..+|.. +..+++|++
T Consensus 74 l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~ 151 (597)
T 3oja_B 74 FRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTT 151 (597)
T ss_dssp CCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCE
T ss_pred CCCCcEEECCCCC-CCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCC-CCCCCHHHhccCCCCCE
Confidence 4569999998875 455533 55667799999999998766667778999999999999974 5566655 467999999
Q ss_pred EEEcCCCCCccccccCCCCCCcceEEecCCCCCcccCCCCCCCCcceEEEccCcCcccCCCCCCCCCcceEeeccCCCcc
Q 039990 985 IRLSYCKNLKSLPKGLNNLSHLHRRSIQGCHNLVSLPEDALPSNVVDVSIEDCDKLKAPLPTGKLSSLQLLTLIECPGIV 1064 (1217)
Q Consensus 985 L~L~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~c~~l~ 1064 (1217)
|+|++|......|..+..+++|+.|++++| .++.++.. ..++|+.|++++|..... ...++|++|++++|. +.
T Consensus 152 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~-~l~~L~~L~l~~n~l~~l----~~~~~L~~L~ls~n~-l~ 224 (597)
T 3oja_B 152 LSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVDLS-LIPSLFHANVSYNLLSTL----AIPIAVEELDASHNS-IN 224 (597)
T ss_dssp EECCSSCCCBCCTTTTTTCTTCCEEECTTS-CCSBCCGG-GCTTCSEEECCSSCCSEE----ECCTTCSEEECCSSC-CC
T ss_pred EEeeCCcCCCCChhhhhcCCcCcEEECcCC-CCCCcChh-hhhhhhhhhcccCccccc----cCCchhheeeccCCc-cc
Confidence 999998765555677999999999999997 46666533 346899999999865443 345789999999975 44
Q ss_pred ccCCCCCCCCCCeEEecCCCCCccccccccccCCcccceeeccCCCccccccccccCCCCCCcceEeecCCCCCcccCcc
Q 039990 1065 FFPEEGLSTNLTDLEISGDNIYKPLVKWGFDKFSSLRKHCINRCSDAVSFPEVEKGVILPTSLTLIRISDFPKLERLSSK 1144 (1217)
Q Consensus 1065 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~ 1144 (1217)
.++. ..+++|+.|++++|..... ..+..+++|+.|++++|......|. .+..+++|+.|++++ +.+..+| .
T Consensus 225 ~~~~-~~~~~L~~L~L~~n~l~~~---~~l~~l~~L~~L~Ls~N~l~~~~~~---~~~~l~~L~~L~Ls~-N~l~~l~-~ 295 (597)
T 3oja_B 225 VVRG-PVNVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNELEKIMYH---PFVKMQRLERLYISN-NRLVALN-L 295 (597)
T ss_dssp EEEC-SCCSCCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCEEESG---GGTTCSSCCEEECTT-SCCCEEE-C
T ss_pred cccc-ccCCCCCEEECCCCCCCCC---hhhccCCCCCEEECCCCccCCCCHH---HhcCccCCCEEECCC-CCCCCCC-c
Confidence 4443 3457999999999988764 2578999999999999875555454 566789999999999 7888888 6
Q ss_pred ccCCcccccccccccccCcccCCCC-CCCCccceEeccCCcchHHhhcCCCCCCCCcccccceEEECCeeee
Q 039990 1145 GFHYLLSLEQLKVSSCPNFTSFPEA-GFPSSLLFLDIQGCPLLENKFKKGKGQEWPKIAHIPSVLIGGKSIH 1215 (1217)
Q Consensus 1145 ~~~~l~~L~~L~l~~c~~l~~lp~~-~~~~sL~~L~l~~c~~l~~~~~~~~~~~~~~i~~i~~~~~~~~~~~ 1215 (1217)
.+..+++|+.|++++| .+..+|.. ..+++|+.|++++|.-. +.....++.+..+++++|.++
T Consensus 296 ~~~~l~~L~~L~Ls~N-~l~~i~~~~~~l~~L~~L~L~~N~l~--------~~~~~~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 296 YGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNSIV--------TLKLSTHHTLKNLTLSHNDWD 358 (597)
T ss_dssp SSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSCCC--------CCCCCTTCCCSEEECCSSCEE
T ss_pred ccccCCCCcEEECCCC-CCCccCcccccCCCCCEEECCCCCCC--------CcChhhcCCCCEEEeeCCCCC
Confidence 6778999999999999 67788865 45789999999999732 123556778999999998875
No 45
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.80 E-value=6e-19 Score=197.04 Aligned_cols=227 Identities=20% Similarity=0.277 Sum_probs=148.8
Q ss_pred CCccEEeecCCCCCcccccccccccCcceEeeccCCCccccccccCCCCcccEEEEcCCCCCccccccCCCCCCcceEEe
Q 039990 932 VTLKCIQIEDCSNFKVLTSECQLSVAVEELTIDSCSNIESIAERFHDDACLRSIRLSYCKNLKSLPKGLNNLSHLHRRSI 1011 (1217)
Q Consensus 932 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~l 1011 (1217)
..++.|++++|.. ..+|..+..+++|++|++++|.. ..+|..+..+++|++|+|++|. +..+|..+..+++|++|++
T Consensus 81 ~~l~~L~L~~n~l-~~lp~~l~~l~~L~~L~L~~n~l-~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSVPL-PQFPDQAFRLSHLQHMTIDAAGL-MELPDTMQQFAGLETLTLARNP-LRALPASIASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESSCC-SSCCSCGGGGTTCSEEEEESSCC-CCCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGCTTCCEEEE
T ss_pred cceeEEEccCCCc-hhcChhhhhCCCCCEEECCCCCc-cchhHHHhccCCCCEEECCCCc-cccCcHHHhcCcCCCEEEC
Confidence 4678888888654 46777788899999999998754 4888888888999999999964 5588888889999999999
Q ss_pred cCCCCCcccCCCCCCCCcceEEEccCcCcccCCCCCCCCCcceEeeccCCCccccCCC-CCCCCCCeEEecCCCCCcccc
Q 039990 1012 QGCHNLVSLPEDALPSNVVDVSIEDCDKLKAPLPTGKLSSLQLLTLIECPGIVFFPEE-GLSTNLTDLEISGDNIYKPLV 1090 (1217)
Q Consensus 1012 ~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~~~~~~~~~ 1090 (1217)
++|+.++.+|.... ...+. ..+..+++|++|++++|. +..+|.. ..+++|++|++++|.... ++
T Consensus 158 ~~n~~~~~~p~~~~-----~~~~~--------~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~N~l~~-l~ 222 (328)
T 4fcg_A 158 RACPELTELPEPLA-----STDAS--------GEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLKIRNSPLSA-LG 222 (328)
T ss_dssp EEETTCCCCCSCSE-----EEC-C--------CCEEESTTCCEEEEEEEC-CCCCCGGGGGCTTCCEEEEESSCCCC-CC
T ss_pred CCCCCccccChhHh-----hccch--------hhhccCCCCCEEECcCCC-cCcchHhhcCCCCCCEEEccCCCCCc-Cc
Confidence 99888877775321 11110 012345556666666542 3344433 345566666666665543 22
Q ss_pred ccccccCCcccceeeccCCCccccccccccCCCCCCcceEeecCCCCCcccCccccCCcccccccccccccCcccCCCC-
Q 039990 1091 KWGFDKFSSLRKHCINRCSDAVSFPEVEKGVILPTSLTLIRISDFPKLERLSSKGFHYLLSLEQLKVSSCPNFTSFPEA- 1169 (1217)
Q Consensus 1091 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~lp~~- 1169 (1217)
. .+..+++|++|++++|+....+|. .+..+++|+.|++++|+.++.+| ..+.++++|++|++++|+.++.+|..
T Consensus 223 ~-~l~~l~~L~~L~Ls~n~~~~~~p~---~~~~l~~L~~L~L~~n~~~~~~p-~~~~~l~~L~~L~L~~n~~~~~iP~~l 297 (328)
T 4fcg_A 223 P-AIHHLPKLEELDLRGCTALRNYPP---IFGGRAPLKRLILKDCSNLLTLP-LDIHRLTQLEKLDLRGCVNLSRLPSLI 297 (328)
T ss_dssp G-GGGGCTTCCEEECTTCTTCCBCCC---CTTCCCCCCEEECTTCTTCCBCC-TTGGGCTTCCEEECTTCTTCCCCCGGG
T ss_pred h-hhccCCCCCEEECcCCcchhhhHH---HhcCCCCCCEEECCCCCchhhcc-hhhhcCCCCCEEeCCCCCchhhccHHH
Confidence 2 356666666666666666666654 44455666777777666666666 45666667777777776666666654
Q ss_pred CCCCccceEecc
Q 039990 1170 GFPSSLLFLDIQ 1181 (1217)
Q Consensus 1170 ~~~~sL~~L~l~ 1181 (1217)
+.+++|+.+++.
T Consensus 298 ~~L~~L~~l~l~ 309 (328)
T 4fcg_A 298 AQLPANCIILVP 309 (328)
T ss_dssp GGSCTTCEEECC
T ss_pred hhccCceEEeCC
Confidence 445566666554
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.78 E-value=1.2e-17 Score=187.99 Aligned_cols=284 Identities=13% Similarity=0.154 Sum_probs=213.1
Q ss_pred cccceEeccCCCCcccccCCCCCCCccEEeecCCCCCcccccccccccCcceEeeccCCCccccccccCCCCcccEEEEc
Q 039990 909 DLESLSVQSCPSLTRLWSSGRLPVTLKCIQIEDCSNFKVLTSECQLSVAVEELTIDSCSNIESIAERFHDDACLRSIRLS 988 (1217)
Q Consensus 909 ~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~L~ 988 (1217)
+++.+.++++ .++.++. ..+++|+.|++++|......+..+.++++|++|++++|......|..+..+++|++|+++
T Consensus 34 ~l~~l~~~~~-~l~~ip~--~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDL-GLKAVPK--EISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSS-CCSSCCS--CCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCC-CccccCC--CCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 4777877765 3555533 235689999999987666556788999999999999986555557788889999999999
Q ss_pred CCCCCccccccCCCCCCcceEEecCCCCCcccCCCC--CCCCcceEEEccCcCcc--c-CCCCCCCCCcceEeeccCCCc
Q 039990 989 YCKNLKSLPKGLNNLSHLHRRSIQGCHNLVSLPEDA--LPSNVVDVSIEDCDKLK--A-PLPTGKLSSLQLLTLIECPGI 1063 (1217)
Q Consensus 989 ~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~--~~~~L~~L~l~~~~~l~--~-~~~~~~l~~L~~L~l~~c~~l 1063 (1217)
+| .+..+|..+. ++|++|++++| .++.++... ..++|+.|++++|.... . +..+..+ +|++|++++|. +
T Consensus 111 ~n-~l~~l~~~~~--~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~-l 184 (332)
T 2ft3_A 111 KN-HLVEIPPNLP--SSLVELRIHDN-RIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK-L 184 (332)
T ss_dssp SS-CCCSCCSSCC--TTCCEEECCSS-CCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB-C
T ss_pred CC-cCCccCcccc--ccCCEEECCCC-ccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC-C
Confidence 96 4667877665 89999999996 467776532 34799999999997643 1 2333555 99999999864 5
Q ss_pred cccCCCCCCCCCCeEEecCCCCCccccccccccCCcccceeeccCCCccccccccccCCCCCCcceEeecCCCCCcccCc
Q 039990 1064 VFFPEEGLSTNLTDLEISGDNIYKPLVKWGFDKFSSLRKHCINRCSDAVSFPEVEKGVILPTSLTLIRISDFPKLERLSS 1143 (1217)
Q Consensus 1064 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~ 1143 (1217)
..+|.. ..++|++|++++|......+. .+..+++|++|++++|. +..++. ..+..+++|+.|++++ +.+..+|
T Consensus 185 ~~l~~~-~~~~L~~L~l~~n~i~~~~~~-~l~~l~~L~~L~L~~N~-l~~~~~--~~~~~l~~L~~L~L~~-N~l~~lp- 257 (332)
T 2ft3_A 185 TGIPKD-LPETLNELHLDHNKIQAIELE-DLLRYSKLYRLGLGHNQ-IRMIEN--GSLSFLPTLRELHLDN-NKLSRVP- 257 (332)
T ss_dssp SSCCSS-SCSSCSCCBCCSSCCCCCCTT-SSTTCTTCSCCBCCSSC-CCCCCT--TGGGGCTTCCEEECCS-SCCCBCC-
T ss_pred CccCcc-ccCCCCEEECCCCcCCccCHH-HhcCCCCCCEEECCCCc-CCcCCh--hHhhCCCCCCEEECCC-CcCeecC-
Confidence 556643 448999999999987765443 68899999999999975 444443 2456789999999999 6899999
Q ss_pred cccCCcccccccccccccCcccCCCCCC--------CCccceEeccCCcchHHhhcCCCCCCCCcccccceEEECCe
Q 039990 1144 KGFHYLLSLEQLKVSSCPNFTSFPEAGF--------PSSLLFLDIQGCPLLENKFKKGKGQEWPKIAHIPSVLIGGK 1212 (1217)
Q Consensus 1144 ~~~~~l~~L~~L~l~~c~~l~~lp~~~~--------~~sL~~L~l~~c~~l~~~~~~~~~~~~~~i~~i~~~~~~~~ 1212 (1217)
..+..+++|++|++++| .++.+|...+ .++|+.|++.+||..... .....+..++++..++++++
T Consensus 258 ~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~---~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 258 AGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWE---VQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp TTGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGG---SCGGGGTTBCCSTTEEC---
T ss_pred hhhhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCcccccc---cCcccccccchhhhhhcccc
Confidence 67999999999999999 7888875422 467899999999843211 22344566778888888765
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.78 E-value=1.1e-17 Score=188.19 Aligned_cols=285 Identities=13% Similarity=0.159 Sum_probs=213.7
Q ss_pred cccceEeccCCCCcccccCCCCCCCccEEeecCCCCCcccccccccccCcceEeeccCCCccccccccCCCCcccEEEEc
Q 039990 909 DLESLSVQSCPSLTRLWSSGRLPVTLKCIQIEDCSNFKVLTSECQLSVAVEELTIDSCSNIESIAERFHDDACLRSIRLS 988 (1217)
Q Consensus 909 ~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~L~ 988 (1217)
+++.+.++++ .++.++. ..+++|+.|++++|......+..+.++++|++|++++|......|..+..+++|++|+++
T Consensus 32 ~l~~l~~~~~-~l~~lp~--~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDL-GLEKVPK--DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTS-CCCSCCC--SCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCC-CccccCc--cCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 4777777654 3445532 345689999999987666556678899999999999986555558888889999999999
Q ss_pred CCCCCccccccCCCCCCcceEEecCCCCCcccCCC--CCCCCcceEEEccCcCcc---cCCCCCCCCCcceEeeccCCCc
Q 039990 989 YCKNLKSLPKGLNNLSHLHRRSIQGCHNLVSLPED--ALPSNVVDVSIEDCDKLK---APLPTGKLSSLQLLTLIECPGI 1063 (1217)
Q Consensus 989 ~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~l~~~~~l~---~~~~~~~l~~L~~L~l~~c~~l 1063 (1217)
+|. +..+|..+. ++|++|++++|. ++.++.. ...++|+.|++++|.... .+..+..+++|++|++++|. +
T Consensus 109 ~n~-l~~l~~~~~--~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l 183 (330)
T 1xku_A 109 KNQ-LKELPEKMP--KTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-I 183 (330)
T ss_dssp SSC-CSBCCSSCC--TTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-C
T ss_pred CCc-CCccChhhc--ccccEEECCCCc-ccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-c
Confidence 964 677877664 899999999964 6666532 234699999999997643 12334789999999999864 5
Q ss_pred cccCCCCCCCCCCeEEecCCCCCccccccccccCCcccceeeccCCCccccccccccCCCCCCcceEeecCCCCCcccCc
Q 039990 1064 VFFPEEGLSTNLTDLEISGDNIYKPLVKWGFDKFSSLRKHCINRCSDAVSFPEVEKGVILPTSLTLIRISDFPKLERLSS 1143 (1217)
Q Consensus 1064 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~ 1143 (1217)
..+|.. ..++|++|++++|......+. .+..+++|++|++++|.. ..++. ..+..+++|++|++++ +.+..+|
T Consensus 184 ~~l~~~-~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l-~~~~~--~~~~~l~~L~~L~L~~-N~l~~lp- 256 (330)
T 1xku_A 184 TTIPQG-LPPSLTELHLDGNKITKVDAA-SLKGLNNLAKLGLSFNSI-SAVDN--GSLANTPHLRELHLNN-NKLVKVP- 256 (330)
T ss_dssp CSCCSS-CCTTCSEEECTTSCCCEECTG-GGTTCTTCCEEECCSSCC-CEECT--TTGGGSTTCCEEECCS-SCCSSCC-
T ss_pred ccCCcc-ccccCCEEECCCCcCCccCHH-HhcCCCCCCEEECCCCcC-ceeCh--hhccCCCCCCEEECCC-CcCccCC-
Confidence 556644 348999999999987654443 688999999999999764 33332 2456789999999999 6889999
Q ss_pred cccCCcccccccccccccCcccCCCCCC--------CCccceEeccCCcchHHhhcCCCCCCCCcccccceEEECCe
Q 039990 1144 KGFHYLLSLEQLKVSSCPNFTSFPEAGF--------PSSLLFLDIQGCPLLENKFKKGKGQEWPKIAHIPSVLIGGK 1212 (1217)
Q Consensus 1144 ~~~~~l~~L~~L~l~~c~~l~~lp~~~~--------~~sL~~L~l~~c~~l~~~~~~~~~~~~~~i~~i~~~~~~~~ 1212 (1217)
.++..+++|++|++++| .++.+|...+ .++|+.|++.++|--.. ......+....++..+++++|
T Consensus 257 ~~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~---~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 257 GGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYW---EIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp TTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGG---GSCGGGGTTCCCGGGEEC---
T ss_pred hhhccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeecCccccc---ccCccccccccceeEEEeccc
Confidence 67899999999999999 7888876432 36889999999984321 122345666778888888765
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.77 E-value=1.8e-17 Score=186.41 Aligned_cols=242 Identities=12% Similarity=0.109 Sum_probs=163.6
Q ss_pred CCCCccEEeecCCCCCcccccccccccCcceEeeccCCCccccccccCCCCcccEEEEcCCCCCcccc-ccCCCCCCcce
Q 039990 930 LPVTLKCIQIEDCSNFKVLTSECQLSVAVEELTIDSCSNIESIAERFHDDACLRSIRLSYCKNLKSLP-KGLNNLSHLHR 1008 (1217)
Q Consensus 930 ~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~L~~c~~l~~l~-~~l~~l~~L~~ 1008 (1217)
..++|+.|++++|......+..+..+++|++|++++| .+..+|.... ++|++|++++|. +..+| ..+..+++|+.
T Consensus 76 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~ 151 (332)
T 2ft3_A 76 GLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN-HLVEIPPNLP--SSLVELRIHDNR-IRKVPKGVFSGLRNMNC 151 (332)
T ss_dssp TCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS-CCCSCCSSCC--TTCCEEECCSSC-CCCCCSGGGSSCSSCCE
T ss_pred CCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC-cCCccCcccc--ccCCEEECCCCc-cCccCHhHhCCCccCCE
Confidence 3356888888887665555777788888888888886 3556666554 788888888855 44454 44778888888
Q ss_pred EEecCCCCCcc--c-CCCCCCCCcceEEEccCcCcccCCCCCCCCCcceEeeccCCCccccCCC-CCCCCCCeEEecCCC
Q 039990 1009 RSIQGCHNLVS--L-PEDALPSNVVDVSIEDCDKLKAPLPTGKLSSLQLLTLIECPGIVFFPEE-GLSTNLTDLEISGDN 1084 (1217)
Q Consensus 1009 L~l~~c~~l~~--l-~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~~~ 1084 (1217)
|++++|. ++. + +......+|+.|++++|.....+ ....++|++|++++|......+.. ..+++|++|++++|.
T Consensus 152 L~l~~n~-l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~--~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~ 228 (332)
T 2ft3_A 152 IEMGGNP-LENSGFEPGAFDGLKLNYLRISEAKLTGIP--KDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ 228 (332)
T ss_dssp EECCSCC-CBGGGSCTTSSCSCCCSCCBCCSSBCSSCC--SSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSC
T ss_pred EECCCCc-cccCCCCcccccCCccCEEECcCCCCCccC--ccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc
Confidence 8888865 332 2 22111127888888888755542 233478888888886433322222 457889999999887
Q ss_pred CCccccccccccCCcccceeeccCCCccccccccccCCCCCCcceEeecCCCCCcccCccccCC------cccccccccc
Q 039990 1085 IYKPLVKWGFDKFSSLRKHCINRCSDAVSFPEVEKGVILPTSLTLIRISDFPKLERLSSKGFHY------LLSLEQLKVS 1158 (1217)
Q Consensus 1085 ~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~------l~~L~~L~l~ 1158 (1217)
.....+. .+..+++|++|++++| .+..+|. .+..+++|+.|++++ |.++.++...+.. .++|+.|+++
T Consensus 229 l~~~~~~-~~~~l~~L~~L~L~~N-~l~~lp~---~l~~l~~L~~L~l~~-N~l~~~~~~~~~~~~~~~~~~~l~~L~l~ 302 (332)
T 2ft3_A 229 IRMIENG-SLSFLPTLRELHLDNN-KLSRVPA---GLPDLKLLQVVYLHT-NNITKVGVNDFCPVGFGVKRAYYNGISLF 302 (332)
T ss_dssp CCCCCTT-GGGGCTTCCEEECCSS-CCCBCCT---TGGGCTTCCEEECCS-SCCCBCCTTSSSCSSCCSSSCCBSEEECC
T ss_pred CCcCChh-HhhCCCCCCEEECCCC-cCeecCh---hhhcCccCCEEECCC-CCCCccChhHccccccccccccccceEee
Confidence 6654433 5788899999999986 4557776 456778999999998 6888887665554 4678899999
Q ss_pred cccCcc-cCCCC--CCCCccceEeccCCc
Q 039990 1159 SCPNFT-SFPEA--GFPSSLLFLDIQGCP 1184 (1217)
Q Consensus 1159 ~c~~l~-~lp~~--~~~~sL~~L~l~~c~ 1184 (1217)
+|+... .++.. ..+++|+.+++++|.
T Consensus 303 ~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 303 NNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cCcccccccCcccccccchhhhhhccccc
Confidence 996431 33322 446788888888775
No 49
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.76 E-value=8.7e-19 Score=194.64 Aligned_cols=247 Identities=15% Similarity=0.097 Sum_probs=178.0
Q ss_pred CccEEeecCCCCCc--ccccccccccCcceEeecc-CCCccccccccCCCCcccEEEEcCCCCCccccccCCCCCCcceE
Q 039990 933 TLKCIQIEDCSNFK--VLTSECQLSVAVEELTIDS-CSNIESIAERFHDDACLRSIRLSYCKNLKSLPKGLNNLSHLHRR 1009 (1217)
Q Consensus 933 ~L~~L~l~~~~~l~--~~~~~~~~l~~L~~L~l~~-~~~l~~l~~~~~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L 1009 (1217)
.++.|++++|.... .+|..+..+++|++|++++ +.....+|..+..+++|++|++++|.....+|..+..+++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 57777777776665 6677777778888888875 44444667777777888888888766555677777778888888
Q ss_pred EecCCCCCcccCCC-CCCCCcceEEEccCcCc-ccCCCCCCCC-CcceEeeccCCCccccCCC-CCCCCCCeEEecCCCC
Q 039990 1010 SIQGCHNLVSLPED-ALPSNVVDVSIEDCDKL-KAPLPTGKLS-SLQLLTLIECPGIVFFPEE-GLSTNLTDLEISGDNI 1085 (1217)
Q Consensus 1010 ~l~~c~~l~~l~~~-~~~~~L~~L~l~~~~~l-~~~~~~~~l~-~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~~~~ 1085 (1217)
++++|.....+|.. ...++|++|++++|... ..+..+..++ +|++|++++|.....+|.. ..+. |++|++++|..
T Consensus 131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l 209 (313)
T 1ogq_A 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML 209 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEE
T ss_pred eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcc
Confidence 88776433244431 12357888888877655 2333446676 8899999887654455544 2233 99999999877
Q ss_pred CccccccccccCCcccceeeccCCCccccccccccCCCCCCcceEeecCCCCCc-ccCccccCCcccccccccccccCcc
Q 039990 1086 YKPLVKWGFDKFSSLRKHCINRCSDAVSFPEVEKGVILPTSLTLIRISDFPKLE-RLSSKGFHYLLSLEQLKVSSCPNFT 1164 (1217)
Q Consensus 1086 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~-~l~~~~~~~l~~L~~L~l~~c~~l~ 1164 (1217)
....+. .+..+++|+.|++++|.....++. +..+++|++|++++ +.+. .+| ..+.++++|++|++++|+..+
T Consensus 210 ~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~----~~~l~~L~~L~Ls~-N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~ 282 (313)
T 1ogq_A 210 EGDASV-LFGSDKNTQKIHLAKNSLAFDLGK----VGLSKNLNGLDLRN-NRIYGTLP-QGLTQLKFLHSLNVSFNNLCG 282 (313)
T ss_dssp EECCGG-GCCTTSCCSEEECCSSEECCBGGG----CCCCTTCCEEECCS-SCCEECCC-GGGGGCTTCCEEECCSSEEEE
T ss_pred cCcCCH-HHhcCCCCCEEECCCCceeeecCc----ccccCCCCEEECcC-CcccCcCC-hHHhcCcCCCEEECcCCcccc
Confidence 665554 678899999999999765434432 45679999999999 5565 666 788999999999999996666
Q ss_pred cCCCCCCCCccceEeccCCcchH
Q 039990 1165 SFPEAGFPSSLLFLDIQGCPLLE 1187 (1217)
Q Consensus 1165 ~lp~~~~~~sL~~L~l~~c~~l~ 1187 (1217)
.+|..+.+++|+.+++.+++.+.
T Consensus 283 ~ip~~~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 283 EIPQGGNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp ECCCSTTGGGSCGGGTCSSSEEE
T ss_pred cCCCCccccccChHHhcCCCCcc
Confidence 88887778899999999998664
No 50
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.74 E-value=1e-16 Score=180.25 Aligned_cols=240 Identities=15% Similarity=0.116 Sum_probs=140.4
Q ss_pred CCccEEeecCCCCCcccccccccccCcceEeeccCCCccccccccCCCCcccEEEEcCCCCCccccccCCCCCCcceEEe
Q 039990 932 VTLKCIQIEDCSNFKVLTSECQLSVAVEELTIDSCSNIESIAERFHDDACLRSIRLSYCKNLKSLPKGLNNLSHLHRRSI 1011 (1217)
Q Consensus 932 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~l 1011 (1217)
++|+.|++++|......|..+..+++|++|++++|. ++.+|..+. ++|++|++++|......+..+..+++|+.|++
T Consensus 76 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 152 (330)
T 1xku_A 76 KNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-LKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVEL 152 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc-CCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEEC
Confidence 456666666655444445566666666666666643 445554433 56666666665433333344566666666666
Q ss_pred cCCCCCcc--cCCCC--CCCCcceEEEccCcCcccCCCCCCCCCcceEeeccCCCccccCCC-CCCCCCCeEEecCCCCC
Q 039990 1012 QGCHNLVS--LPEDA--LPSNVVDVSIEDCDKLKAPLPTGKLSSLQLLTLIECPGIVFFPEE-GLSTNLTDLEISGDNIY 1086 (1217)
Q Consensus 1012 ~~c~~l~~--l~~~~--~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~~~~~ 1086 (1217)
++|.. +. +.... ..++|+.|++++|.....+ ....++|++|++++|..-...+.. ..+++|++|++++|...
T Consensus 153 ~~n~l-~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~--~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 229 (330)
T 1xku_A 153 GTNPL-KSSGIENGAFQGMKKLSYIRIADTNITTIP--QGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 229 (330)
T ss_dssp CSSCC-CGGGBCTTGGGGCTTCCEEECCSSCCCSCC--SSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCC
T ss_pred CCCcC-CccCcChhhccCCCCcCEEECCCCccccCC--ccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCc
Confidence 66542 21 11111 1246666666666544332 222367777777776432222222 45677888888877665
Q ss_pred ccccccccccCCcccceeeccCCCccccccccccCCCCCCcceEeecCCCCCcccCccccCC------cccccccccccc
Q 039990 1087 KPLVKWGFDKFSSLRKHCINRCSDAVSFPEVEKGVILPTSLTLIRISDFPKLERLSSKGFHY------LLSLEQLKVSSC 1160 (1217)
Q Consensus 1087 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~------l~~L~~L~l~~c 1160 (1217)
...+. .+..+++|++|++++| .+..+|. .+..+++|++|++++ |.++.++...+.. .++|+.|++++|
T Consensus 230 ~~~~~-~~~~l~~L~~L~L~~N-~l~~lp~---~l~~l~~L~~L~l~~-N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N 303 (330)
T 1xku_A 230 AVDNG-SLANTPHLRELHLNNN-KLVKVPG---GLADHKYIQVVYLHN-NNISAIGSNDFCPPGYNTKKASYSGVSLFSN 303 (330)
T ss_dssp EECTT-TGGGSTTCCEEECCSS-CCSSCCT---TTTTCSSCCEEECCS-SCCCCCCTTSSSCSSCCTTSCCCSEEECCSS
T ss_pred eeChh-hccCCCCCCEEECCCC-cCccCCh---hhccCCCcCEEECCC-CcCCccChhhcCCcccccccccccceEeecC
Confidence 43332 5677888888888886 4556665 455678888888888 6788887555543 367888888888
Q ss_pred cCcc-cCCCC--CCCCccceEeccCC
Q 039990 1161 PNFT-SFPEA--GFPSSLLFLDIQGC 1183 (1217)
Q Consensus 1161 ~~l~-~lp~~--~~~~sL~~L~l~~c 1183 (1217)
+... .++.. ..+.+++.+++++|
T Consensus 304 ~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 304 PVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp SSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred cccccccCccccccccceeEEEeccc
Confidence 5321 13222 34577888887765
No 51
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.74 E-value=2.2e-17 Score=184.35 Aligned_cols=227 Identities=19% Similarity=0.250 Sum_probs=172.3
Q ss_pred ccccceEeccCCCCcccccCCCCCCCccEEeecCCCCCcccccccccccCcceEeeccCCCccccccccCCCCcccEEEE
Q 039990 908 LDLESLSVQSCPSLTRLWSSGRLPVTLKCIQIEDCSNFKVLTSECQLSVAVEELTIDSCSNIESIAERFHDDACLRSIRL 987 (1217)
Q Consensus 908 ~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~L 987 (1217)
++++.|+++++. ++.++.....+++|+.|++++|... .+|..+..+++|++|++++|. +..+|..+..+++|++|++
T Consensus 81 ~~l~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSVP-LPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNP-LRALPASIASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESSC-CSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGCTTCCEEEE
T ss_pred cceeEEEccCCC-chhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCc-cccCcHHHhcCcCCCEEEC
Confidence 458999999864 5566555555779999999998765 888889999999999999975 5588988989999999999
Q ss_pred cCCCCCccccccCCC---------CCCcceEEecCCCCCcccCCCCCCCCcceEEEccCcCcccCCCCCCCCCcceEeec
Q 039990 988 SYCKNLKSLPKGLNN---------LSHLHRRSIQGCHNLVSLPEDALPSNVVDVSIEDCDKLKAPLPTGKLSSLQLLTLI 1058 (1217)
Q Consensus 988 ~~c~~l~~l~~~l~~---------l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~ 1058 (1217)
++|+.+..+|..+.. +++|++|++++| .++.+|. .+..+++|++|+++
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~----------------------~l~~l~~L~~L~L~ 214 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPA----------------------SIANLQNLKSLKIR 214 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCG----------------------GGGGCTTCCEEEEE
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcchH----------------------hhcCCCCCCEEEcc
Confidence 999999999887654 788888888876 3555543 22345666666666
Q ss_pred cCCCccccCCC-CCCCCCCeEEecCCCCCccccccccccCCcccceeeccCCCccccccccccCCCCCCcceEeecCCCC
Q 039990 1059 ECPGIVFFPEE-GLSTNLTDLEISGDNIYKPLVKWGFDKFSSLRKHCINRCSDAVSFPEVEKGVILPTSLTLIRISDFPK 1137 (1217)
Q Consensus 1059 ~c~~l~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~ 1137 (1217)
+|... .+|.. ..+++|++|++++|+..+.++. .+..+++|++|++++|+....+|. .+..+++|++|++++|+.
T Consensus 215 ~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~-~~~~l~~L~~L~L~~n~~~~~~p~---~~~~l~~L~~L~L~~n~~ 289 (328)
T 4fcg_A 215 NSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPP-IFGGRAPLKRLILKDCSNLLTLPL---DIHRLTQLEKLDLRGCVN 289 (328)
T ss_dssp SSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCC-CTTCCCCCCEEECTTCTTCCBCCT---TGGGCTTCCEEECTTCTT
T ss_pred CCCCC-cCchhhccCCCCCEEECcCCcchhhhHH-HhcCCCCCCEEECCCCCchhhcch---hhhcCCCCCEEeCCCCCc
Confidence 65432 33322 4466777777777777666654 577888888888888888888876 456778899999999888
Q ss_pred CcccCccccCCcccccccccccccCcccCC
Q 039990 1138 LERLSSKGFHYLLSLEQLKVSSCPNFTSFP 1167 (1217)
Q Consensus 1138 l~~l~~~~~~~l~~L~~L~l~~c~~l~~lp 1167 (1217)
++.+| .++.++++|+.+++..+ .+..++
T Consensus 290 ~~~iP-~~l~~L~~L~~l~l~~~-~~~~l~ 317 (328)
T 4fcg_A 290 LSRLP-SLIAQLPANCIILVPPH-LQAQLD 317 (328)
T ss_dssp CCCCC-GGGGGSCTTCEEECCGG-GSCC--
T ss_pred hhhcc-HHHhhccCceEEeCCHH-HHHHHh
Confidence 88888 78889999999988876 455444
No 52
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.73 E-value=8.1e-17 Score=189.45 Aligned_cols=225 Identities=20% Similarity=0.212 Sum_probs=147.6
Q ss_pred CCCCCccEEeecCCCCCcccccccccccCcceEeeccCCCccccccccCCCCcccEEEEcCCCCCcccc-ccCCCCCCcc
Q 039990 929 RLPVTLKCIQIEDCSNFKVLTSECQLSVAVEELTIDSCSNIESIAERFHDDACLRSIRLSYCKNLKSLP-KGLNNLSHLH 1007 (1217)
Q Consensus 929 ~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~L~~c~~l~~l~-~~l~~l~~L~ 1007 (1217)
..+++++.|++++|+.....+..+.++++|+.|++++|......+..+..+++|++|+|++|. +..+| ..+..+++|+
T Consensus 72 ~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~ 150 (452)
T 3zyi_A 72 GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW-LTVIPSGAFEYLSKLR 150 (452)
T ss_dssp CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSBCCTTTSSSCTTCC
T ss_pred CCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc-CCccChhhhcccCCCC
Confidence 345689999999987766667788889999999999975544445677778999999999965 55554 4478889999
Q ss_pred eEEecCCCCCcccCCCCC--CCCcceEEEccCcCcccCC--CCCCCCCcceEeeccCCCccccCCCCCCCCCCeEEecCC
Q 039990 1008 RRSIQGCHNLVSLPEDAL--PSNVVDVSIEDCDKLKAPL--PTGKLSSLQLLTLIECPGIVFFPEEGLSTNLTDLEISGD 1083 (1217)
Q Consensus 1008 ~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~~~~l~~~~--~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~ 1083 (1217)
+|++++|. ++.++...+ .++|+.|++++|..+.... .+..+++|++|++++| .+..+|....+++|++|++++|
T Consensus 151 ~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~N 228 (452)
T 3zyi_A 151 ELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKDMPNLTPLVGLEELEMSGN 228 (452)
T ss_dssp EEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS-CCSSCCCCTTCTTCCEEECTTS
T ss_pred EEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC-cccccccccccccccEEECcCC
Confidence 99999864 666765333 2566777776665555422 2356667777777665 3444554455666666666666
Q ss_pred CCCccccccccccCCcccceeeccCCCccccccccccCCCCCCcceEeecCCCCCcccCccccCCccccccccccccc
Q 039990 1084 NIYKPLVKWGFDKFSSLRKHCINRCSDAVSFPEVEKGVILPTSLTLIRISDFPKLERLSSKGFHYLLSLEQLKVSSCP 1161 (1217)
Q Consensus 1084 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~L~~L~l~~c~ 1161 (1217)
......+. .|.++++|++|++++|......+ ..+..+++|+.|++++ |++..+|...+..+++|+.|++++|+
T Consensus 229 ~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 229 HFPEIRPG-SFHGLSSLKKLWVMNSQVSLIER---NAFDGLASLVELNLAH-NNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CCSEECGG-GGTTCTTCCEEECTTSCCCEECT---TTTTTCTTCCEEECCS-SCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred cCcccCcc-cccCccCCCEEEeCCCcCceECH---HHhcCCCCCCEEECCC-CcCCccChHHhccccCCCEEEccCCC
Confidence 55543333 46666666666666654322222 2445556666666666 46666665556666666666666663
No 53
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.73 E-value=7.2e-18 Score=187.23 Aligned_cols=250 Identities=14% Similarity=0.084 Sum_probs=198.3
Q ss_pred cccceEeccCCCCc--ccccCCCCCCCccEEeecC-CCCCcccccccccccCcceEeeccCCCccccccccCCCCcccEE
Q 039990 909 DLESLSVQSCPSLT--RLWSSGRLPVTLKCIQIED-CSNFKVLTSECQLSVAVEELTIDSCSNIESIAERFHDDACLRSI 985 (1217)
Q Consensus 909 ~L~~L~l~~~~~l~--~l~~~~~~~~~L~~L~l~~-~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L 985 (1217)
+++.|+++++.--. .++......++|+.|++++ +.....+|..+..+++|++|++++|.....+|..+..+++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 48889998875443 4555556667999999996 55566889899999999999999987767889888889999999
Q ss_pred EEcCCCCCccccccCCCCCCcceEEecCCCCCcccCCC--CCCCCcceEEEccCcCccc-CCCCCCCCCcceEeeccCCC
Q 039990 986 RLSYCKNLKSLPKGLNNLSHLHRRSIQGCHNLVSLPED--ALPSNVVDVSIEDCDKLKA-PLPTGKLSSLQLLTLIECPG 1062 (1217)
Q Consensus 986 ~L~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~l~~~~~l~~-~~~~~~l~~L~~L~l~~c~~ 1062 (1217)
++++|.....+|..+..+++|++|++++|..-..+|.. .++++|+.|++++|..... +..+..++ |++|++++|..
T Consensus 131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l 209 (313)
T 1ogq_A 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML 209 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEE
T ss_pred eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcc
Confidence 99998766688999999999999999997644366642 2334899999999986633 23335565 99999999764
Q ss_pred ccccCCC-CCCCCCCeEEecCCCCCccccccccccCCcccceeeccCCCccccccccccCCCCCCcceEeecCCCCCc-c
Q 039990 1063 IVFFPEE-GLSTNLTDLEISGDNIYKPLVKWGFDKFSSLRKHCINRCSDAVSFPEVEKGVILPTSLTLIRISDFPKLE-R 1140 (1217)
Q Consensus 1063 l~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~-~ 1140 (1217)
....+.. ..+++|++|++++|......+. +..+++|++|++++|.....+|. .+..+++|+.|+++++ .+. .
T Consensus 210 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~~l~~L~~L~Ls~N~l~~~~p~---~l~~l~~L~~L~Ls~N-~l~~~ 283 (313)
T 1ogq_A 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGK--VGLSKNLNGLDLRNNRIYGTLPQ---GLTQLKFLHSLNVSFN-NLCGE 283 (313)
T ss_dssp EECCGGGCCTTSCCSEEECCSSEECCBGGG--CCCCTTCCEEECCSSCCEECCCG---GGGGCTTCCEEECCSS-EEEEE
T ss_pred cCcCCHHHhcCCCCCEEECCCCceeeecCc--ccccCCCCEEECcCCcccCcCCh---HHhcCcCCCEEECcCC-ccccc
Confidence 4444433 5689999999999988766653 67899999999999877667776 5567899999999995 555 7
Q ss_pred cCccccCCcccccccccccccCcccCC
Q 039990 1141 LSSKGFHYLLSLEQLKVSSCPNFTSFP 1167 (1217)
Q Consensus 1141 l~~~~~~~l~~L~~L~l~~c~~l~~lp 1167 (1217)
+| . ..++++|+.|++++|+.+...|
T Consensus 284 ip-~-~~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 284 IP-Q-GGNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp CC-C-STTGGGSCGGGTCSSSEEESTT
T ss_pred CC-C-CccccccChHHhcCCCCccCCC
Confidence 77 3 3889999999999998776544
No 54
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.72 E-value=1.3e-16 Score=186.94 Aligned_cols=225 Identities=17% Similarity=0.203 Sum_probs=169.1
Q ss_pred CCCCCccEEeecCCCCCcccccccccccCcceEeeccCCCccccccccCCCCcccEEEEcCCCCCccccc-cCCCCCCcc
Q 039990 929 RLPVTLKCIQIEDCSNFKVLTSECQLSVAVEELTIDSCSNIESIAERFHDDACLRSIRLSYCKNLKSLPK-GLNNLSHLH 1007 (1217)
Q Consensus 929 ~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~L~~c~~l~~l~~-~l~~l~~L~ 1007 (1217)
..+.+++.|++++|......+..+.++++|++|++++|......+..+..+++|++|+|++| .+..+|. .+..+++|+
T Consensus 61 ~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~ 139 (440)
T 3zyj_A 61 GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN-RLTTIPNGAFVYLSKLK 139 (440)
T ss_dssp CCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS-CCSSCCTTTSCSCSSCC
T ss_pred CCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC-cCCeeCHhHhhccccCc
Confidence 34568889999888766666677888899999999987644444566777889999999986 4555644 578889999
Q ss_pred eEEecCCCCCcccCCCCC--CCCcceEEEccCcCcccCC--CCCCCCCcceEeeccCCCccccCCCCCCCCCCeEEecCC
Q 039990 1008 RRSIQGCHNLVSLPEDAL--PSNVVDVSIEDCDKLKAPL--PTGKLSSLQLLTLIECPGIVFFPEEGLSTNLTDLEISGD 1083 (1217)
Q Consensus 1008 ~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~~~~l~~~~--~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~ 1083 (1217)
+|++++|. ++.++...+ .++|+.|++++|..+.... .+..+++|++|++++| .+..+|....+++|++|++++|
T Consensus 140 ~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~N 217 (440)
T 3zyj_A 140 ELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIPNLTPLIKLDELDLSGN 217 (440)
T ss_dssp EEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS-CCSSCCCCTTCSSCCEEECTTS
T ss_pred eeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC-cCccccccCCCcccCEEECCCC
Confidence 99999864 677765333 3688888888877666532 2467888999999886 4566776677888999999988
Q ss_pred CCCccccccccccCCcccceeeccCCCccccccccccCCCCCCcceEeecCCCCCcccCccccCCccccccccccccc
Q 039990 1084 NIYKPLVKWGFDKFSSLRKHCINRCSDAVSFPEVEKGVILPTSLTLIRISDFPKLERLSSKGFHYLLSLEQLKVSSCP 1161 (1217)
Q Consensus 1084 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~L~~L~l~~c~ 1161 (1217)
......+ ..|..+++|++|++++|. +..++. ..+..+++|+.|++++ |++..++...+..+++|+.|++++|+
T Consensus 218 ~l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~--~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 218 HLSAIRP-GSFQGLMHLQKLWMIQSQ-IQVIER--NAFDNLQSLVEINLAH-NNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CCCEECT-TTTTTCTTCCEEECTTCC-CCEECT--TSSTTCTTCCEEECTT-SCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred ccCccCh-hhhccCccCCEEECCCCc-eeEECh--hhhcCCCCCCEEECCC-CCCCccChhHhccccCCCEEEcCCCC
Confidence 6665444 367888899999998865 444433 3566778899999988 68888887778888889999888875
No 55
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.71 E-value=5.2e-16 Score=186.34 Aligned_cols=234 Identities=24% Similarity=0.287 Sum_probs=168.5
Q ss_pred ccccceEeccCCCCcccccCCCCCCCccEEeecCCCCCcccccccccccCcceEeeccCCCccccccccCCCCcccEEEE
Q 039990 908 LDLESLSVQSCPSLTRLWSSGRLPVTLKCIQIEDCSNFKVLTSECQLSVAVEELTIDSCSNIESIAERFHDDACLRSIRL 987 (1217)
Q Consensus 908 ~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~L 987 (1217)
++|+.|+++++ .++.++. .+++|+.|++++|. ++.+|. .+++|++|++++| .+..+|. .+++|+.|++
T Consensus 61 ~~L~~L~L~~N-~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N-~l~~l~~---~l~~L~~L~L 128 (622)
T 3g06_A 61 AHITTLVIPDN-NLTSLPA---LPPELRTLEVSGNQ-LTSLPV---LPPGLLELSIFSN-PLTHLPA---LPSGLCKLWI 128 (622)
T ss_dssp TTCSEEEECSC-CCSCCCC---CCTTCCEEEECSCC-CSCCCC---CCTTCCEEEECSC-CCCCCCC---CCTTCCEEEC
T ss_pred CCCcEEEecCC-CCCCCCC---cCCCCCEEEcCCCc-CCcCCC---CCCCCCEEECcCC-cCCCCCC---CCCCcCEEEC
Confidence 34888888876 3555533 45688888888875 445654 6788888888886 4555655 4678888888
Q ss_pred cCCCCCccccccCCCCCCcceEEecCCCCCcccCCCCCCCCcceEEEccCcCcccCCCCCCCCCcceEeeccCCCccccC
Q 039990 988 SYCKNLKSLPKGLNNLSHLHRRSIQGCHNLVSLPEDALPSNVVDVSIEDCDKLKAPLPTGKLSSLQLLTLIECPGIVFFP 1067 (1217)
Q Consensus 988 ~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~ 1067 (1217)
++| .+..+|.. +++|++|++++| .++.+|. .+++|+.|++++|.....+ ..+++|++|++++|. +..+|
T Consensus 129 ~~N-~l~~lp~~---l~~L~~L~Ls~N-~l~~l~~--~~~~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls~N~-l~~l~ 197 (622)
T 3g06_A 129 FGN-QLTSLPVL---PPGLQELSVSDN-QLASLPA--LPSELCKLWAYNNQLTSLP---MLPSGLQELSVSDNQ-LASLP 197 (622)
T ss_dssp CSS-CCSCCCCC---CTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSC-CSCCC
T ss_pred CCC-CCCcCCCC---CCCCCEEECcCC-cCCCcCC--ccCCCCEEECCCCCCCCCc---ccCCCCcEEECCCCC-CCCCC
Confidence 885 46667654 478888888886 5666664 4568888888888765543 567888888888864 44455
Q ss_pred CCCCCCCCCeEEecCCCCCccccccccccCCcccceeeccCCCccccccccccCCCCCCcceEeecCCCCCcccCccccC
Q 039990 1068 EEGLSTNLTDLEISGDNIYKPLVKWGFDKFSSLRKHCINRCSDAVSFPEVEKGVILPTSLTLIRISDFPKLERLSSKGFH 1147 (1217)
Q Consensus 1068 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~ 1147 (1217)
. .+++|+.|++++|.... ++. .+++|++|++++| .+..+|. .+++|+.|++++ |++..+|.
T Consensus 198 ~--~~~~L~~L~L~~N~l~~-l~~----~~~~L~~L~Ls~N-~L~~lp~------~l~~L~~L~Ls~-N~L~~lp~---- 258 (622)
T 3g06_A 198 T--LPSELYKLWAYNNRLTS-LPA----LPSGLKELIVSGN-RLTSLPV------LPSELKELMVSG-NRLTSLPM---- 258 (622)
T ss_dssp C--CCTTCCEEECCSSCCSS-CCC----CCTTCCEEECCSS-CCSCCCC------CCTTCCEEECCS-SCCSCCCC----
T ss_pred C--ccchhhEEECcCCcccc-cCC----CCCCCCEEEccCC-ccCcCCC------CCCcCcEEECCC-CCCCcCCc----
Confidence 3 45788888888876553 322 3578888888886 4556663 458888888888 57888883
Q ss_pred CcccccccccccccCcccCCCC-CCCCccceEeccCCc
Q 039990 1148 YLLSLEQLKVSSCPNFTSFPEA-GFPSSLLFLDIQGCP 1184 (1217)
Q Consensus 1148 ~l~~L~~L~l~~c~~l~~lp~~-~~~~sL~~L~l~~c~ 1184 (1217)
.+++|+.|++++| .++.+|.. ..+++|+.|++++|+
T Consensus 259 ~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 259 LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCC
T ss_pred ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCC
Confidence 5678888888888 67788764 456788888888886
No 56
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.71 E-value=3.3e-16 Score=183.49 Aligned_cols=239 Identities=15% Similarity=0.161 Sum_probs=191.6
Q ss_pred ccEEeecCCCCCcccccccccccCcceEeeccCCCccccccccCCCCcccEEEEcCCCCCccccccCCCCCCcceEEecC
Q 039990 934 LKCIQIEDCSNFKVLTSECQLSVAVEELTIDSCSNIESIAERFHDDACLRSIRLSYCKNLKSLPKGLNNLSHLHRRSIQG 1013 (1217)
Q Consensus 934 L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~l~~ 1013 (1217)
...++.++ ..+..+|..+ .++++.|++++|......+..+..+++|++|+|++|......+..+.++++|++|++++
T Consensus 45 ~~~v~c~~-~~l~~iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVR-KNLREVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCS-CCCSSCCSCC--CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCC-CCcCcCCCCC--CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 44555544 4566677655 37899999999865555557788899999999999764444457789999999999999
Q ss_pred CCCCcccCCCCC--CCCcceEEEccCcCcccCC-CCCCCCCcceEeeccCCCccccCCC--CCCCCCCeEEecCCCCCcc
Q 039990 1014 CHNLVSLPEDAL--PSNVVDVSIEDCDKLKAPL-PTGKLSSLQLLTLIECPGIVFFPEE--GLSTNLTDLEISGDNIYKP 1088 (1217)
Q Consensus 1014 c~~l~~l~~~~~--~~~L~~L~l~~~~~l~~~~-~~~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~~~~~~~ 1088 (1217)
| .++.++...+ .++|++|++++|.....+. .+..+++|++|++++|+.+..++.. ..+++|++|++++|....
T Consensus 122 n-~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~- 199 (440)
T 3zyj_A 122 N-RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE- 199 (440)
T ss_dssp S-CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-
T ss_pred C-cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-
Confidence 6 6788876433 3799999999998665532 3578999999999999988888765 458999999999997664
Q ss_pred ccccccccCCcccceeeccCCCccccccccccCCCCCCcceEeecCCCCCcccCccccCCcccccccccccccCcccCCC
Q 039990 1089 LVKWGFDKFSSLRKHCINRCSDAVSFPEVEKGVILPTSLTLIRISDFPKLERLSSKGFHYLLSLEQLKVSSCPNFTSFPE 1168 (1217)
Q Consensus 1089 ~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~lp~ 1168 (1217)
++ .+..+++|++|++++|. +..++. ..+..+++|+.|++++ +.+..++...+.++++|+.|++++| .++.+|.
T Consensus 200 ~~--~~~~l~~L~~L~Ls~N~-l~~~~~--~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~ 272 (440)
T 3zyj_A 200 IP--NLTPLIKLDELDLSGNH-LSAIRP--GSFQGLMHLQKLWMIQ-SQIQVIERNAFDNLQSLVEINLAHN-NLTLLPH 272 (440)
T ss_dssp CC--CCTTCSSCCEEECTTSC-CCEECT--TTTTTCTTCCEEECTT-CCCCEECTTSSTTCTTCCEEECTTS-CCCCCCT
T ss_pred cc--ccCCCcccCEEECCCCc-cCccCh--hhhccCccCCEEECCC-CceeEEChhhhcCCCCCCEEECCCC-CCCccCh
Confidence 33 47899999999999985 444432 3677889999999999 7899998788999999999999999 8888886
Q ss_pred C--CCCCccceEeccCCc
Q 039990 1169 A--GFPSSLLFLDIQGCP 1184 (1217)
Q Consensus 1169 ~--~~~~sL~~L~l~~c~ 1184 (1217)
. ..+++|+.|++++||
T Consensus 273 ~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 273 DLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TTTSSCTTCCEEECCSSC
T ss_pred hHhccccCCCEEEcCCCC
Confidence 5 447899999999887
No 57
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.71 E-value=9.2e-19 Score=215.05 Aligned_cols=142 Identities=15% Similarity=0.120 Sum_probs=73.1
Q ss_pred cccccCccceEccccccccc-------cccccchhhhhhhcCCCCcceEEEcCCCCcccccccccccccChhhhccc--c
Q 039990 445 FLDEVENLRTFLPIFMEDFF-------ISFCISPMVLSDLLPKCKKLRVLSLEKDNIAEVPISIGCLKCLPEAITSL--F 515 (1217)
Q Consensus 445 ~~~~~~~lr~l~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~lp~~i~~L--~ 515 (1217)
.+..+++|++|.+.+..... .+.......+...+..+++|++|+|++|.++.. .+..+..+ .
T Consensus 68 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~---------~~~~l~~~~~~ 138 (592)
T 3ogk_B 68 LSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDL---------DLDRLAKARAD 138 (592)
T ss_dssp HHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHH---------HHHHHHHHHGG
T ss_pred HHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHH---------HHHHHHHhccc
Confidence 34556778887765432210 011112223444455778888888888876542 13445443 4
Q ss_pred cCcEEecccccccc--cccccccccccccEEeecCCcccccc-----CCCCccCcccccccccccccC--hhhhHHHHhc
Q 039990 516 NLEILILSYCWCLL--KLPSSIGNLVNLHHLDIEGADRLCEL-----PLGMKELKCLRTLTDFINVID--SQEANEAMLR 586 (1217)
Q Consensus 516 ~L~~L~L~~~~~l~--~lp~~i~~L~~L~~L~l~~~~~l~~l-----p~~i~~L~~L~~L~~~~n~~~--~~~~~~~~l~ 586 (1217)
+|++|+|++|..+. .++..+.++++|++|++++| .+... +..+..+++|++|++..|... ........+.
T Consensus 139 ~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~ 217 (592)
T 3ogk_B 139 DLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEES-SFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIAR 217 (592)
T ss_dssp GCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTC-EEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHH
T ss_pred cCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccc-cccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHh
Confidence 58888888774321 23333456788888888887 43322 112234555666655544433 1122233333
Q ss_pred CCCCCCeEEE
Q 039990 587 GKKDLEVLKL 596 (1217)
Q Consensus 587 ~l~~L~~L~l 596 (1217)
.+++|+.|++
T Consensus 218 ~~~~L~~L~L 227 (592)
T 3ogk_B 218 NCRSLVSVKV 227 (592)
T ss_dssp HCTTCCEEEC
T ss_pred hCCCCcEEec
Confidence 4445554444
No 58
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.71 E-value=3.8e-16 Score=183.76 Aligned_cols=220 Identities=15% Similarity=0.116 Sum_probs=175.4
Q ss_pred ccccceEeccCCCCccc-ccCCCCCCCccEEeecCCCCCcccccccccccCcceEeeccCCCccccc-cccCCCCcccEE
Q 039990 908 LDLESLSVQSCPSLTRL-WSSGRLPVTLKCIQIEDCSNFKVLTSECQLSVAVEELTIDSCSNIESIA-ERFHDDACLRSI 985 (1217)
Q Consensus 908 ~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L 985 (1217)
++++.|+++++. ++.+ +......++|+.|++++|......+..+.++++|++|++++|. +..++ ..+..+++|++|
T Consensus 75 ~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L 152 (452)
T 3zyi_A 75 SNTRYLNLMENN-IQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW-LTVIPSGAFEYLSKLREL 152 (452)
T ss_dssp TTCSEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSBCCTTTSSSCTTCCEE
T ss_pred CCccEEECcCCc-CceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc-CCccChhhhcccCCCCEE
Confidence 458999998864 4444 3344566799999999987766667889999999999999975 45555 446779999999
Q ss_pred EEcCCCCCcccc-ccCCCCCCcceEEecCCCCCcccCCCCC--CCCcceEEEccCcCcccCCCCCCCCCcceEeeccCCC
Q 039990 986 RLSYCKNLKSLP-KGLNNLSHLHRRSIQGCHNLVSLPEDAL--PSNVVDVSIEDCDKLKAPLPTGKLSSLQLLTLIECPG 1062 (1217)
Q Consensus 986 ~L~~c~~l~~l~-~~l~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~c~~ 1062 (1217)
+|++|. +..+| ..+..+++|+.|++++|+.++.++...+ .++|+.|++++|..... ..+..+++|++|++++|..
T Consensus 153 ~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~l~~L~~L~Ls~N~l 230 (452)
T 3zyi_A 153 WLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-PNLTPLVGLEELEMSGNHF 230 (452)
T ss_dssp ECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-CCCTTCTTCCEEECTTSCC
T ss_pred ECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-ccccccccccEEECcCCcC
Confidence 999976 55554 4788999999999999999999986543 37999999999976655 5678999999999999765
Q ss_pred ccccCCC-CCCCCCCeEEecCCCCCccccccccccCCcccceeeccCCCccccccccccCCCCCCcceEeecCC
Q 039990 1063 IVFFPEE-GLSTNLTDLEISGDNIYKPLVKWGFDKFSSLRKHCINRCSDAVSFPEVEKGVILPTSLTLIRISDF 1135 (1217)
Q Consensus 1063 l~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c 1135 (1217)
....+.. ..+++|++|++++|......+. .|..+++|++|+|++| .+..++. ..+..+++|+.|+++++
T Consensus 231 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~N-~l~~~~~--~~~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 231 PEIRPGSFHGLSSLKKLWVMNSQVSLIERN-AFDGLASLVELNLAHN-NLSSLPH--DLFTPLRYLVELHLHHN 300 (452)
T ss_dssp SEECGGGGTTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECCSS-CCSCCCT--TSSTTCTTCCEEECCSS
T ss_pred cccCcccccCccCCCEEEeCCCcCceECHH-HhcCCCCCCEEECCCC-cCCccCh--HHhccccCCCEEEccCC
Confidence 4443433 5688999999999987765444 6899999999999997 5566665 45677899999999984
No 59
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.69 E-value=1.8e-16 Score=180.01 Aligned_cols=256 Identities=18% Similarity=0.142 Sum_probs=178.2
Q ss_pred CCcccccCCCCCCCccEEeecCCCCCcccccccccccCcceEeeccCCCccccccccCCCCcccEEEEcCCCCCcccccc
Q 039990 920 SLTRLWSSGRLPVTLKCIQIEDCSNFKVLTSECQLSVAVEELTIDSCSNIESIAERFHDDACLRSIRLSYCKNLKSLPKG 999 (1217)
Q Consensus 920 ~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~L~~c~~l~~l~~~ 999 (1217)
.++.+|. ..+++|+.|++++|......+..+.++++|++|++++|......+..+..+++|++|++++|. +..+|..
T Consensus 42 ~l~~iP~--~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~ 118 (353)
T 2z80_A 42 SLNSIPS--GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY-LSNLSSS 118 (353)
T ss_dssp TCSSCCT--TCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSSCCHH
T ss_pred Ccccccc--cccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc-CCcCCHh
Confidence 4455532 344589999999876555444578888999999999875444445667778999999999864 5556544
Q ss_pred -CCCCCCcceEEecCCCCCcccCC-CC--CCCCcceEEEccCcCcccC--CCCCCCCCcceEeeccCCCccccCCC-CCC
Q 039990 1000 -LNNLSHLHRRSIQGCHNLVSLPE-DA--LPSNVVDVSIEDCDKLKAP--LPTGKLSSLQLLTLIECPGIVFFPEE-GLS 1072 (1217)
Q Consensus 1000 -l~~l~~L~~L~l~~c~~l~~l~~-~~--~~~~L~~L~l~~~~~l~~~--~~~~~l~~L~~L~l~~c~~l~~~~~~-~~~ 1072 (1217)
+..+++|++|++++| .++.++. .. ..++|++|++++|..+... ..+..+++|++|++++|......+.. ..+
T Consensus 119 ~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l 197 (353)
T 2z80_A 119 WFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSI 197 (353)
T ss_dssp HHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTC
T ss_pred HhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhcc
Confidence 788899999999986 4667765 22 2478999999988654442 34578899999999987644443433 557
Q ss_pred CCCCeEEecCCCCCccccccccccCCcccceeeccCCCcccccc-ccccCCCCCCcceEeecCCCCCc-----ccCcccc
Q 039990 1073 TNLTDLEISGDNIYKPLVKWGFDKFSSLRKHCINRCSDAVSFPE-VEKGVILPTSLTLIRISDFPKLE-----RLSSKGF 1146 (1217)
Q Consensus 1073 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~~~~L~~L~l~~c~~l~-----~l~~~~~ 1146 (1217)
++|++|++++|... .++...+..+++|++|++++|.. ..++. ..........++.++++++ .+. .+| ..+
T Consensus 198 ~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l-~~~~~~~l~~~~~~~~l~~l~L~~~-~l~~~~l~~l~-~~l 273 (353)
T 2z80_A 198 QNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDL-DTFHFSELSTGETNSLIKKFTFRNV-KITDESLFQVM-KLL 273 (353)
T ss_dssp SEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBC-TTCCCC------CCCCCCEEEEESC-BCCHHHHHHHH-HHH
T ss_pred ccCCeecCCCCccc-cchhhhhhhcccccEEECCCCcc-ccccccccccccccchhhccccccc-cccCcchhhhH-HHH
Confidence 88999999998753 44443456788999999998653 33321 1111234566777777763 333 355 567
Q ss_pred CCcccccccccccccCcccCCCC--CCCCccceEeccCCc
Q 039990 1147 HYLLSLEQLKVSSCPNFTSFPEA--GFPSSLLFLDIQGCP 1184 (1217)
Q Consensus 1147 ~~l~~L~~L~l~~c~~l~~lp~~--~~~~sL~~L~l~~c~ 1184 (1217)
.++++|+.|++++| .++.+|.. ..+++|+.|++++|+
T Consensus 274 ~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 274 NQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp HTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred hcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCC
Confidence 78889999999999 78888875 457899999998875
No 60
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.69 E-value=3.2e-18 Score=210.21 Aligned_cols=85 Identities=12% Similarity=0.038 Sum_probs=43.6
Q ss_pred CCCCcceEeeccCCC-ccc--cCC-CCCCCCCCeEEecCCCCCccccccccccCCcccceeeccCCCccc--cccccccC
Q 039990 1048 KLSSLQLLTLIECPG-IVF--FPE-EGLSTNLTDLEISGDNIYKPLVKWGFDKFSSLRKHCINRCSDAVS--FPEVEKGV 1121 (1217)
Q Consensus 1048 ~l~~L~~L~l~~c~~-l~~--~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~--~~~~~~~~ 1121 (1217)
.+++|++|++++|.. +.. +.. ...+++|++|++++|...+......+..+++|++|+|++|+ ++. ++. ..
T Consensus 434 ~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~---~~ 509 (592)
T 3ogk_B 434 GCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAA---AV 509 (592)
T ss_dssp HCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHH---HH
T ss_pred hCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHH---HH
Confidence 356666666655442 111 000 02356677777776665432222234566777777777766 221 111 12
Q ss_pred CCCCCcceEeecCCC
Q 039990 1122 ILPTSLTLIRISDFP 1136 (1217)
Q Consensus 1122 ~~~~~L~~L~l~~c~ 1136 (1217)
..+++|+.|++++|+
T Consensus 510 ~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 510 TKLPSLRYLWVQGYR 524 (592)
T ss_dssp HHCSSCCEEEEESCB
T ss_pred HhcCccCeeECcCCc
Confidence 245677777777754
No 61
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.68 E-value=1.3e-15 Score=182.83 Aligned_cols=256 Identities=21% Similarity=0.196 Sum_probs=131.2
Q ss_pred cceEEEcCCCCcccccccccccccChhhhcccccCcEEecccccccccccccccccccccEEeecCCccccccCCCCccC
Q 039990 483 KLRVLSLEKDNIAEVPISIGCLKCLPEAITSLFNLEILILSYCWCLLKLPSSIGNLVNLHHLDIEGADRLCELPLGMKEL 562 (1217)
Q Consensus 483 ~Lr~L~L~~~~i~~lp~~i~~L~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L 562 (1217)
++++|++++|+++.+|.. +. .+|++|+|++| .+..+|. .+++|++|++++| .++.+|. .+
T Consensus 41 ~l~~L~ls~n~L~~lp~~----------l~--~~L~~L~L~~N-~l~~lp~---~l~~L~~L~Ls~N-~l~~lp~---~l 100 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDC----------LP--AHITTLVIPDN-NLTSLPA---LPPELRTLEVSGN-QLTSLPV---LP 100 (622)
T ss_dssp CCCEEECCSSCCSCCCSC----------CC--TTCSEEEECSC-CCSCCCC---CCTTCCEEEECSC-CCSCCCC---CC
T ss_pred CCcEEEecCCCcCccChh----------hC--CCCcEEEecCC-CCCCCCC---cCCCCCEEEcCCC-cCCcCCC---CC
Confidence 577888888888777642 22 57888888887 6777776 5677888888887 6777775 44
Q ss_pred cccccccccccccChhhhHHHHhcCCCCCCeEEEEecCCCCchhhHHHHhcccCCCCCccEEEEEeeCCCCCCCCcCCCC
Q 039990 563 KCLRTLTDFINVIDSQEANEAMLRGKKDLEVLKLVWSGGPVDELREKNILDMLKPHCNIKRLEIISYGSTRFPSWVGDPS 642 (1217)
Q Consensus 563 ~~L~~L~~~~n~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~ 642 (1217)
++|++|++..|.+..... .+++|+.|+++++....+|..
T Consensus 101 ~~L~~L~Ls~N~l~~l~~------------------------------------~l~~L~~L~L~~N~l~~lp~~----- 139 (622)
T 3g06_A 101 PGLLELSIFSNPLTHLPA------------------------------------LPSGLCKLWIFGNQLTSLPVL----- 139 (622)
T ss_dssp TTCCEEEECSCCCCCCCC------------------------------------CCTTCCEEECCSSCCSCCCCC-----
T ss_pred CCCCEEECcCCcCCCCCC------------------------------------CCCCcCEEECCCCCCCcCCCC-----
Confidence 555555554433221100 123445555555555555442
Q ss_pred cCcccEEEEecCCCCCCCCCCCCcCCCCeeEEcCCCCceEeCccccCCCCcccCcccceeeccccccccccccCCccccc
Q 039990 643 FSNVAVLKLENCDRCTSLPSLGQLCSLKDLTIVGMSALKSVGSEIYGEGCSKPFRSLQTLYFEDLQEWEHWEPNRENDEH 722 (1217)
Q Consensus 643 l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 722 (1217)
+++|+.|++++| .+..+|. .+++|+.|++++ +.++.++ ..+++|+.|+++++.. ..+. .
T Consensus 140 l~~L~~L~Ls~N-~l~~l~~--~~~~L~~L~L~~-N~l~~l~---------~~~~~L~~L~Ls~N~l-~~l~-----~-- 198 (622)
T 3g06_A 140 PPGLQELSVSDN-QLASLPA--LPSELCKLWAYN-NQLTSLP---------MLPSGLQELSVSDNQL-ASLP-----T-- 198 (622)
T ss_dssp CTTCCEEECCSS-CCSCCCC--CCTTCCEEECCS-SCCSCCC---------CCCTTCCEEECCSSCC-SCCC-----C--
T ss_pred CCCCCEEECcCC-cCCCcCC--ccCCCCEEECCC-CCCCCCc---------ccCCCCcEEECCCCCC-CCCC-----C--
Confidence 245556666554 2333332 234555555554 2333332 1144555555555432 1100 0
Q ss_pred cccCccccEEeecCCCCccCCCCCCCCCccEEEEccCCCccccCCCCCcccEEEEccCCCccccCCCCCCCccceeeccc
Q 039990 723 VQAFSHLRKLSIKRCPKLSGRLPNHLPSLEEIVIAGCMHLAVSLPSLPALCTMEIDGCKRLVCDGPSESKSLNEMALCNI 802 (1217)
Q Consensus 723 ~~~~~~L~~L~l~~c~~L~~~~p~~l~~L~~L~l~~c~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~ 802 (1217)
.+++|+.|.+++| .+. .+|..+++|+.|++++|.... ....+++|+.|++++|....... .+++|+
T Consensus 199 --~~~~L~~L~L~~N-~l~-~l~~~~~~L~~L~Ls~N~L~~-lp~~l~~L~~L~Ls~N~L~~lp~--~~~~L~------- 264 (622)
T 3g06_A 199 --LPSELYKLWAYNN-RLT-SLPALPSGLKELIVSGNRLTS-LPVLPSELKELMVSGNRLTSLPM--LPSGLL------- 264 (622)
T ss_dssp --CCTTCCEEECCSS-CCS-SCCCCCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSCCCC--CCTTCC-------
T ss_pred --ccchhhEEECcCC-ccc-ccCCCCCCCCEEEccCCccCc-CCCCCCcCcEEECCCCCCCcCCc--ccccCc-------
Confidence 2355556666555 443 455555556666665553221 11223444444444432211111 222333
Q ss_pred cccccccccccccccceeeeccccCCCccccccccccCCCcccEEEEeccCC
Q 039990 803 SKFENWSMENLVRFGFYSVDTSKDCNALTSLTDGMIHNNVRLEVLRIIGCHS 854 (1217)
Q Consensus 803 ~~l~~~~~~~~~~~~~l~~L~l~~c~~l~~l~~~~~~~l~~L~~L~l~~c~~ 854 (1217)
.|++++ |.++.+|.. +.++++|+.|++++|+.
T Consensus 265 ------------------~L~Ls~-N~L~~lp~~-l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 265 ------------------SLSVYR-NQLTRLPES-LIHLSSETTVNLEGNPL 296 (622)
T ss_dssp ------------------EEECCS-SCCCSCCGG-GGGSCTTCEEECCSCCC
T ss_pred ------------------EEeCCC-CCCCcCCHH-HhhccccCEEEecCCCC
Confidence 333333 345566655 66677777777777653
No 62
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.68 E-value=5.3e-16 Score=172.31 Aligned_cols=237 Identities=19% Similarity=0.196 Sum_probs=145.0
Q ss_pred CCcccccCCCCCCCccEEeecCCCCCcccccccccccCcceEeeccCCCc--cccccccCCCCcccEEEEcCCCCCcccc
Q 039990 920 SLTRLWSSGRLPVTLKCIQIEDCSNFKVLTSECQLSVAVEELTIDSCSNI--ESIAERFHDDACLRSIRLSYCKNLKSLP 997 (1217)
Q Consensus 920 ~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l--~~l~~~~~~l~~L~~L~L~~c~~l~~l~ 997 (1217)
.++.++. ..+++|+.|++++|......+..+.++++|++|++++|... ...+..+..+++|++|++++|. +..+|
T Consensus 18 ~l~~ip~--~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~ 94 (306)
T 2z66_A 18 GLTSVPT--GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMS 94 (306)
T ss_dssp CCSSCCS--CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS-EEEEE
T ss_pred CcccCCC--CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc-cccCh
Confidence 3455532 34568999999987654333344678899999999987533 1224555568899999999854 66777
Q ss_pred ccCCCCCCcceEEecCCCCCcccCCCCCCCCcceEEEccCcCcccCCCCCCCCCcceEeeccCCCccccCCC-CCCCCCC
Q 039990 998 KGLNNLSHLHRRSIQGCHNLVSLPEDALPSNVVDVSIEDCDKLKAPLPTGKLSSLQLLTLIECPGIVFFPEE-GLSTNLT 1076 (1217)
Q Consensus 998 ~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~-~~~~~L~ 1076 (1217)
..+..+++|++|++++|. ++.++.. ..+..+++|++|++++|......+.. ..+++|+
T Consensus 95 ~~~~~l~~L~~L~l~~n~-l~~~~~~--------------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 153 (306)
T 2z66_A 95 SNFLGLEQLEHLDFQHSN-LKQMSEF--------------------SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 153 (306)
T ss_dssp EEEETCTTCCEEECTTSE-EESSTTT--------------------TTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCC
T ss_pred hhcCCCCCCCEEECCCCc-ccccccc--------------------hhhhhccCCCEEECCCCcCCccchhhcccCcCCC
Confidence 778888999999998863 5544420 11234555666666555432222222 3355666
Q ss_pred eEEecCCCCCccccccccccCCcccceeeccCCCccccccccccCCCCCCcceEeecCCCCCcccCccccCCcccccccc
Q 039990 1077 DLEISGDNIYKPLVKWGFDKFSSLRKHCINRCSDAVSFPEVEKGVILPTSLTLIRISDFPKLERLSSKGFHYLLSLEQLK 1156 (1217)
Q Consensus 1077 ~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~L~~L~ 1156 (1217)
+|++++|..........+..+++|++|++++|......+. .+..+++|++|++++ +.+..++...+..+++|++|+
T Consensus 154 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~ 229 (306)
T 2z66_A 154 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT---AFNSLSSLQVLNMSH-NNFFSLDTFPYKCLNSLQVLD 229 (306)
T ss_dssp EEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT---TTTTCTTCCEEECTT-SCCSBCCSGGGTTCTTCCEEE
T ss_pred EEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHH---HhcCCCCCCEEECCC-CccCccChhhccCcccCCEeE
Confidence 6666666554422222466677777777777543322232 445567777777777 566666655667777777777
Q ss_pred cccccCcccCCCC--CCCCccceEeccCCc
Q 039990 1157 VSSCPNFTSFPEA--GFPSSLLFLDIQGCP 1184 (1217)
Q Consensus 1157 l~~c~~l~~lp~~--~~~~sL~~L~l~~c~ 1184 (1217)
+++|+.....|.. ..+++|+.|++++|+
T Consensus 230 L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 230 YSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp CTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred CCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 7777333333332 223577777777765
No 63
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.66 E-value=4.2e-16 Score=176.94 Aligned_cols=226 Identities=13% Similarity=0.131 Sum_probs=141.4
Q ss_pred CCccEEeecCCCCCcccccccccccCcceEeeccCCCccccccc-cCCCCcccEEEEcCCCCCccccc--cCCCCCCcce
Q 039990 932 VTLKCIQIEDCSNFKVLTSECQLSVAVEELTIDSCSNIESIAER-FHDDACLRSIRLSYCKNLKSLPK--GLNNLSHLHR 1008 (1217)
Q Consensus 932 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~-~~~l~~L~~L~L~~c~~l~~l~~--~l~~l~~L~~ 1008 (1217)
++|+.|++++|......+..+.++++|++|++++|. ++.++.. +..+++|++|++++| .+..+|. .+..+++|++
T Consensus 76 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~ 153 (353)
T 2z80_A 76 VNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY-LSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQI 153 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSSCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCE
T ss_pred CCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc-CCcCCHhHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcE
Confidence 456666666654444444556666677777776653 3344433 455667777777764 3445544 4566777777
Q ss_pred EEecCCCCCcccCCCCC--CCCcceEEEccCcCccc-CCCCCCCCCcceEeeccCCCccccCCC--CCCCCCCeEEecCC
Q 039990 1009 RSIQGCHNLVSLPEDAL--PSNVVDVSIEDCDKLKA-PLPTGKLSSLQLLTLIECPGIVFFPEE--GLSTNLTDLEISGD 1083 (1217)
Q Consensus 1009 L~l~~c~~l~~l~~~~~--~~~L~~L~l~~~~~l~~-~~~~~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~~ 1083 (1217)
|++++|..++.++...+ .++|++|++++|..... +..+..+++|++|++++|. +..++.. ..+++|++|++++|
T Consensus 154 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~L~~n 232 (353)
T 2z80_A 154 LRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ-HILLLEIFVDVTSSVECLELRDT 232 (353)
T ss_dssp EEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSC-STTHHHHHHHHTTTEEEEEEESC
T ss_pred EECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCc-cccchhhhhhhcccccEEECCCC
Confidence 77777655665543222 25677777777664443 2344678888888888765 3444432 23678888888888
Q ss_pred CCCccccc--cccccCCcccceeeccCCCc----cccccccccCCCCCCcceEeecCCCCCcccCccccCCccccccccc
Q 039990 1084 NIYKPLVK--WGFDKFSSLRKHCINRCSDA----VSFPEVEKGVILPTSLTLIRISDFPKLERLSSKGFHYLLSLEQLKV 1157 (1217)
Q Consensus 1084 ~~~~~~~~--~~~~~l~~L~~L~l~~~~~l----~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~L~~L~l 1157 (1217)
........ ......+.++.++++++... ..+|. .+..+++|+.|++++ ++++.+|...+.++++|++|++
T Consensus 233 ~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~---~l~~l~~L~~L~Ls~-N~l~~i~~~~~~~l~~L~~L~L 308 (353)
T 2z80_A 233 DLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMK---LLNQISGLLELEFSR-NQLKSVPDGIFDRLTSLQKIWL 308 (353)
T ss_dssp BCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHH---HHHTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEEC
T ss_pred ccccccccccccccccchhhccccccccccCcchhhhHH---HHhcccCCCEEECCC-CCCCccCHHHHhcCCCCCEEEe
Confidence 76643221 01234566777777775432 23443 345678999999998 6888999555689999999999
Q ss_pred ccccCcc
Q 039990 1158 SSCPNFT 1164 (1217)
Q Consensus 1158 ~~c~~l~ 1164 (1217)
++|+...
T Consensus 309 ~~N~~~~ 315 (353)
T 2z80_A 309 HTNPWDC 315 (353)
T ss_dssp CSSCBCC
T ss_pred eCCCccC
Confidence 9995443
No 64
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.66 E-value=6.9e-16 Score=164.19 Aligned_cols=213 Identities=16% Similarity=0.173 Sum_probs=122.1
Q ss_pred CCCCcccccCCCCCCCccEEeecCCCCCcccccccccccCcceEeeccCCCcccccc-ccCCCCcccEEEEcCCCCCccc
Q 039990 918 CPSLTRLWSSGRLPVTLKCIQIEDCSNFKVLTSECQLSVAVEELTIDSCSNIESIAE-RFHDDACLRSIRLSYCKNLKSL 996 (1217)
Q Consensus 918 ~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~L~~c~~l~~l 996 (1217)
|..++.+|. .+.+|+.|++++|......+..+.++++|++|++++|..++.++. .+..+++|++|++++|+.++.+
T Consensus 20 c~~l~~ip~---~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i 96 (239)
T 2xwt_C 20 CKDIQRIPS---LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYI 96 (239)
T ss_dssp ECSCSSCCC---CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEE
T ss_pred ccCccccCC---CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEc
Confidence 444555533 445666666666544333333455556666666665543444433 3444555555555554444444
Q ss_pred c-ccCCCCCCcceEEecCCCCCcccCCCCCCCCcceEEEccCcCcccCCCCCCCCCcc---eEeeccCCCccccCCCCCC
Q 039990 997 P-KGLNNLSHLHRRSIQGCHNLVSLPEDALPSNVVDVSIEDCDKLKAPLPTGKLSSLQ---LLTLIECPGIVFFPEEGLS 1072 (1217)
Q Consensus 997 ~-~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~---~L~l~~c~~l~~~~~~~~~ 1072 (1217)
+ ..+..+++|++|++++|. ++.+|. +..+++|+ +|++++|+.+..++
T Consensus 97 ~~~~f~~l~~L~~L~l~~n~-l~~lp~-----------------------~~~l~~L~~L~~L~l~~N~~l~~i~----- 147 (239)
T 2xwt_C 97 DPDALKELPLLKFLGIFNTG-LKMFPD-----------------------LTKVYSTDIFFILEITDNPYMTSIP----- 147 (239)
T ss_dssp CTTSEECCTTCCEEEEEEEC-CCSCCC-----------------------CTTCCBCCSEEEEEEESCTTCCEEC-----
T ss_pred CHHHhCCCCCCCEEeCCCCC-Cccccc-----------------------cccccccccccEEECCCCcchhhcC-----
Confidence 3 234445555555555542 222221 22334444 55555553444333
Q ss_pred CCCCeEEecCCCCCccccccccccCCccc-ceeeccCCCccccccccccCCCCCCcceEeecCCCCCcccCccccCCc-c
Q 039990 1073 TNLTDLEISGDNIYKPLVKWGFDKFSSLR-KHCINRCSDAVSFPEVEKGVILPTSLTLIRISDFPKLERLSSKGFHYL-L 1150 (1217)
Q Consensus 1073 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~-~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l-~ 1150 (1217)
...|..+++|+ +|++++|. +..+|. ..+.. ++|+.|+++++..++.++...+.++ +
T Consensus 148 ------------------~~~~~~l~~L~~~L~l~~n~-l~~i~~--~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~ 205 (239)
T 2xwt_C 148 ------------------VNAFQGLCNETLTLKLYNNG-FTSVQG--YAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYS 205 (239)
T ss_dssp ------------------TTTTTTTBSSEEEEECCSCC-CCEECT--TTTTT-CEEEEEECTTCTTCCEECTTTTTTCSB
T ss_pred ------------------cccccchhcceeEEEcCCCC-CcccCH--hhcCC-CCCCEEEcCCCCCcccCCHHHhhcccc
Confidence 33466677777 77777753 445554 23333 6888888888546888876778888 8
Q ss_pred cccccccccccCcccCCCCCCCCccceEeccCCcch
Q 039990 1151 SLEQLKVSSCPNFTSFPEAGFPSSLLFLDIQGCPLL 1186 (1217)
Q Consensus 1151 ~L~~L~l~~c~~l~~lp~~~~~~sL~~L~l~~c~~l 1186 (1217)
+|+.|++++| .++.+|.. .+++|+.|++.++..|
T Consensus 206 ~L~~L~l~~N-~l~~l~~~-~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 206 GPSLLDVSQT-SVTALPSK-GLEHLKELIARNTWTL 239 (239)
T ss_dssp CCSEEECTTC-CCCCCCCT-TCTTCSEEECTTC---
T ss_pred CCcEEECCCC-ccccCChh-HhccCceeeccCccCC
Confidence 8999999888 67788775 5678888888887643
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.66 E-value=2e-16 Score=176.24 Aligned_cols=240 Identities=14% Similarity=0.099 Sum_probs=148.8
Q ss_pred CCCCccEEeecCCCCCcccccccccccCcceEeeccCCCccccccccCCCCcccEEEEcCCCCCccccccCCCCCCcceE
Q 039990 930 LPVTLKCIQIEDCSNFKVLTSECQLSVAVEELTIDSCSNIESIAERFHDDACLRSIRLSYCKNLKSLPKGLNNLSHLHRR 1009 (1217)
Q Consensus 930 ~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L 1009 (1217)
.+++|+.|++++|......+..+..+++|++|++++|......+ +..+++|++|++++|. +..++ ..++|++|
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~-l~~l~----~~~~L~~L 104 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY-VQELL----VGPSIETL 104 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSE-EEEEE----ECTTCCEE
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCc-ccccc----CCCCcCEE
Confidence 34578888888876655555667777888888888765433333 5567788888888753 44443 23778888
Q ss_pred EecCCCCCcccCCCCCCCCcceEEEccCcCcccC-CCCCCCCCcceEeeccCCCccccCCC--CCCCCCCeEEecCCCCC
Q 039990 1010 SIQGCHNLVSLPEDALPSNVVDVSIEDCDKLKAP-LPTGKLSSLQLLTLIECPGIVFFPEE--GLSTNLTDLEISGDNIY 1086 (1217)
Q Consensus 1010 ~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~-~~~~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~~~~~ 1086 (1217)
++++|. ++.++... .++|++|++++|.....+ ..+..+++|++|++++|......+.. ..+++|++|++++|...
T Consensus 105 ~l~~n~-l~~~~~~~-~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 182 (317)
T 3o53_A 105 HAANNN-ISRVSCSR-GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (317)
T ss_dssp ECCSSC-CSEEEECC-CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred ECCCCc-cCCcCccc-cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCc
Confidence 887753 55555433 346777777777655442 23456777777777776433322222 23567777777777655
Q ss_pred ccccccccccCCcccceeeccCCCccccccccccCCCCCCcceEeecCCCCCcccCccccCCcccccccccccccCc-cc
Q 039990 1087 KPLVKWGFDKFSSLRKHCINRCSDAVSFPEVEKGVILPTSLTLIRISDFPKLERLSSKGFHYLLSLEQLKVSSCPNF-TS 1165 (1217)
Q Consensus 1087 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~L~~L~l~~c~~l-~~ 1165 (1217)
.. + ....+++|++|++++|. +..++. .+..+++|+.|++++ |.++.+| ..+..+++|+.|++++|+.. ..
T Consensus 183 ~~-~--~~~~l~~L~~L~Ls~N~-l~~l~~---~~~~l~~L~~L~L~~-N~l~~l~-~~~~~l~~L~~L~l~~N~~~~~~ 253 (317)
T 3o53_A 183 DV-K--GQVVFAKLKTLDLSSNK-LAFMGP---EFQSAAGVTWISLRN-NKLVLIE-KALRFSQNLEHFDLRGNGFHCGT 253 (317)
T ss_dssp EE-E--CCCCCTTCCEEECCSSC-CCEECG---GGGGGTTCSEEECTT-SCCCEEC-TTCCCCTTCCEEECTTCCCBHHH
T ss_pred cc-c--cccccccCCEEECCCCc-CCcchh---hhcccCcccEEECcC-Ccccchh-hHhhcCCCCCEEEccCCCccCcC
Confidence 43 2 22346777777777753 444544 245567777777777 5677777 45677777777777777443 23
Q ss_pred CCCC-CCCCccceEeccCCcchH
Q 039990 1166 FPEA-GFPSSLLFLDIQGCPLLE 1187 (1217)
Q Consensus 1166 lp~~-~~~~sL~~L~l~~c~~l~ 1187 (1217)
+|.. ..+++|+.|++.+|+.++
T Consensus 254 ~~~~~~~~~~L~~l~l~~~~~l~ 276 (317)
T 3o53_A 254 LRDFFSKNQRVQTVAKQTVKKLT 276 (317)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhccccceEEECCCchhcc
Confidence 3332 334566666666665554
No 66
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.64 E-value=5.5e-15 Score=162.09 Aligned_cols=206 Identities=21% Similarity=0.235 Sum_probs=128.7
Q ss_pred CCCCccEEeecCCCCCcccccccccccCcceEeeccCCCccccccccCCCCcccEEEEcCCCCCccc-cccCCCCCCcce
Q 039990 930 LPVTLKCIQIEDCSNFKVLTSECQLSVAVEELTIDSCSNIESIAERFHDDACLRSIRLSYCKNLKSL-PKGLNNLSHLHR 1008 (1217)
Q Consensus 930 ~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~L~~c~~l~~l-~~~l~~l~~L~~ 1008 (1217)
.+++|+.|++++|......+..+..+++|++|++++|......+..+..+++|++|++++|..+..+ |..+..+++|++
T Consensus 30 ~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~ 109 (285)
T 1ozn_A 30 IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT 109 (285)
T ss_dssp CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCE
Confidence 3456677777666544444445566666666666665433333445555666666666665544444 445555666666
Q ss_pred EEecCCCCCcccCCCCCCCCcceEEEccCcCcccCCCCCCCCCcceEeeccCCCccccCCC--CCCCCCCeEEecCCCCC
Q 039990 1009 RSIQGCHNLVSLPEDALPSNVVDVSIEDCDKLKAPLPTGKLSSLQLLTLIECPGIVFFPEE--GLSTNLTDLEISGDNIY 1086 (1217)
Q Consensus 1009 L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~~~~~ 1086 (1217)
|++++|. ++.++. ..+..+++|++|++++|. +..++.. ..+++|++|++++|...
T Consensus 110 L~l~~n~-l~~~~~---------------------~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~ 166 (285)
T 1ozn_A 110 LHLDRCG-LQELGP---------------------GLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRIS 166 (285)
T ss_dssp EECTTSC-CCCCCT---------------------TTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred EECCCCc-CCEECH---------------------hHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCCccc
Confidence 6666543 222221 224578889999998864 3444433 45778888888887655
Q ss_pred ccccccccccCCcccceeeccCCCccccccccccCCCCCCcceEeecCCCCCcccCccccCCcccccccccccccCc
Q 039990 1087 KPLVKWGFDKFSSLRKHCINRCSDAVSFPEVEKGVILPTSLTLIRISDFPKLERLSSKGFHYLLSLEQLKVSSCPNF 1163 (1217)
Q Consensus 1087 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~L~~L~l~~c~~l 1163 (1217)
. ++...+..+++|++|++++|......+. .+..+++|+.|++++ +.+..++...+..+++|+.|++++|+..
T Consensus 167 ~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 167 S-VPERAFRGLHSLDRLLLHQNRVAHVHPH---AFRDLGRLMTLYLFA-NNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp E-ECTTTTTTCTTCCEEECCSSCCCEECTT---TTTTCTTCCEEECCS-SCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred c-cCHHHhcCccccCEEECCCCcccccCHh---HccCcccccEeeCCC-CcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 3 3333577788888888888754433343 455678888888887 5777777666778888888888888543
No 67
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.63 E-value=4.6e-15 Score=162.70 Aligned_cols=106 Identities=16% Similarity=0.189 Sum_probs=46.0
Q ss_pred CCCCCeEEecCCCCCccccccccccCCcccceeeccCCCccccccccccCCCCCCcceEeecCCCCCcccCccccCCccc
Q 039990 1072 STNLTDLEISGDNIYKPLVKWGFDKFSSLRKHCINRCSDAVSFPEVEKGVILPTSLTLIRISDFPKLERLSSKGFHYLLS 1151 (1217)
Q Consensus 1072 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~ 1151 (1217)
+++|++|++++|......+ ..+..+++|++|++++|. ++.++. ..+..+++|++|++++ +.+..+++..+.++++
T Consensus 128 l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~~--~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~ 202 (285)
T 1ozn_A 128 LAALQYLYLQDNALQALPD-DTFRDLGNLTHLFLHGNR-ISSVPE--RAFRGLHSLDRLLLHQ-NRVAHVHPHAFRDLGR 202 (285)
T ss_dssp CTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSC-CCEECT--TTTTTCTTCCEEECCS-SCCCEECTTTTTTCTT
T ss_pred CcCCCEEECCCCcccccCH-hHhccCCCccEEECCCCc-ccccCH--HHhcCccccCEEECCC-CcccccCHhHccCccc
Confidence 4455555555544332221 134444555555555432 223322 1233444555555554 3344443344444555
Q ss_pred ccccccccccCcccCCCC--CCCCccceEeccCC
Q 039990 1152 LEQLKVSSCPNFTSFPEA--GFPSSLLFLDIQGC 1183 (1217)
Q Consensus 1152 L~~L~l~~c~~l~~lp~~--~~~~sL~~L~l~~c 1183 (1217)
|+.|++++| .++.+|.. ..+++|+.|++++|
T Consensus 203 L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N 235 (285)
T 1ozn_A 203 LMTLYLFAN-NLSALPTEALAPLRALQYLRLNDN 235 (285)
T ss_dssp CCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSS
T ss_pred ccEeeCCCC-cCCcCCHHHcccCcccCEEeccCC
Confidence 555555555 34444321 23444555555444
No 68
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.63 E-value=2.2e-15 Score=160.28 Aligned_cols=176 Identities=14% Similarity=0.095 Sum_probs=120.0
Q ss_pred cccccceEeccCCCCccccc-CCCCCCCccEEeecCCCCCcccc-cccccccCcceEeeccCCCccccc-cccCCCCccc
Q 039990 907 YLDLESLSVQSCPSLTRLWS-SGRLPVTLKCIQIEDCSNFKVLT-SECQLSVAVEELTIDSCSNIESIA-ERFHDDACLR 983 (1217)
Q Consensus 907 ~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~l~~l~-~~~~~l~~L~ 983 (1217)
.++++.|+++++. ++.+++ .....++|+.|++++|..++.++ ..+.++++|++|++++|+.++.++ ..+..+++|+
T Consensus 30 ~~~l~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~ 108 (239)
T 2xwt_C 30 PPSTQTLKLIETH-LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLK 108 (239)
T ss_dssp CTTCCEEEEESCC-CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCC
T ss_pred CCcccEEEEeCCc-ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCC
Confidence 3469999999864 565544 34566799999999997566555 478899999999999966777776 4566799999
Q ss_pred EEEEcCCCCCccccccCCCCCCcc---eEEecCCCCCcccCCCCCCCCcceEEEccCcCcccCCCCCCCCCcc-eEeecc
Q 039990 984 SIRLSYCKNLKSLPKGLNNLSHLH---RRSIQGCHNLVSLPEDALPSNVVDVSIEDCDKLKAPLPTGKLSSLQ-LLTLIE 1059 (1217)
Q Consensus 984 ~L~L~~c~~l~~l~~~l~~l~~L~---~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~-~L~l~~ 1059 (1217)
+|++++|. +..+|. +..+++|+ .|++++|+.++.++.. .+..+++|+ +|++++
T Consensus 109 ~L~l~~n~-l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~---------------------~~~~l~~L~~~L~l~~ 165 (239)
T 2xwt_C 109 FLGIFNTG-LKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVN---------------------AFQGLCNETLTLKLYN 165 (239)
T ss_dssp EEEEEEEC-CCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTT---------------------TTTTTBSSEEEEECCS
T ss_pred EEeCCCCC-Cccccc-cccccccccccEEECCCCcchhhcCcc---------------------cccchhcceeEEEcCC
Confidence 99999965 666876 88888888 9999998677777642 235788999 999988
Q ss_pred CCCccccCCCC-CCCCCCeEEecCCCCCccccccccccC-Ccccceeecc
Q 039990 1060 CPGIVFFPEEG-LSTNLTDLEISGDNIYKPLVKWGFDKF-SSLRKHCINR 1107 (1217)
Q Consensus 1060 c~~l~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l-~~L~~L~l~~ 1107 (1217)
|. +..+|... ..++|++|++++|..+..++...|..+ ++|++|++++
T Consensus 166 n~-l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~ 214 (239)
T 2xwt_C 166 NG-FTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ 214 (239)
T ss_dssp CC-CCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT
T ss_pred CC-CcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC
Confidence 64 44555431 123455555555432223322233333 4444444443
No 69
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.63 E-value=2.6e-16 Score=174.82 Aligned_cols=240 Identities=14% Similarity=0.088 Sum_probs=153.1
Q ss_pred CccEEeecCCCCCcccccccccccCcceEeeccCCCc-cccccccC-------CCCcccEEEEcCCCCCccccccC--CC
Q 039990 933 TLKCIQIEDCSNFKVLTSECQLSVAVEELTIDSCSNI-ESIAERFH-------DDACLRSIRLSYCKNLKSLPKGL--NN 1002 (1217)
Q Consensus 933 ~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l-~~l~~~~~-------~l~~L~~L~L~~c~~l~~l~~~l--~~ 1002 (1217)
+|+.|++++|.. .+|..+... |+.|++++|..- ..++.... .+++|++|++++|.....+|..+ ..
T Consensus 44 ~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 119 (312)
T 1wwl_A 44 SLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEAT 119 (312)
T ss_dssp ECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCC
T ss_pred CceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhc
Confidence 456666666555 445433322 666677665431 22333332 46777777777766555666665 67
Q ss_pred CCCcceEEecCCCCCcccCCC------CCCCCcceEEEccCcCcccC-CCCCCCCCcceEeeccCCCcccc---CCC--C
Q 039990 1003 LSHLHRRSIQGCHNLVSLPED------ALPSNVVDVSIEDCDKLKAP-LPTGKLSSLQLLTLIECPGIVFF---PEE--G 1070 (1217)
Q Consensus 1003 l~~L~~L~l~~c~~l~~l~~~------~~~~~L~~L~l~~~~~l~~~-~~~~~l~~L~~L~l~~c~~l~~~---~~~--~ 1070 (1217)
+++|++|++++|. ++.+|.. ..+++|++|++++|.....+ ..+..+++|++|++++|...+.. +.. .
T Consensus 120 l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 198 (312)
T 1wwl_A 120 GPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPL 198 (312)
T ss_dssp SCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTT
T ss_pred CCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhc
Confidence 7777888877754 4444321 11257777777777665553 33577888888888887644321 112 4
Q ss_pred CCCCCCeEEecCCCCCc--cccccccccCCcccceeeccCCCccccccccccCCCCCCcceEeecCCCCCcccCccccCC
Q 039990 1071 LSTNLTDLEISGDNIYK--PLVKWGFDKFSSLRKHCINRCSDAVSFPEVEKGVILPTSLTLIRISDFPKLERLSSKGFHY 1148 (1217)
Q Consensus 1071 ~~~~L~~L~l~~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~ 1148 (1217)
.+++|++|++++|.... .++...+..+++|++|++++|......|. ..+..+++|++|++++ |.++.+| ..+.
T Consensus 199 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~--~~~~~l~~L~~L~Ls~-N~l~~ip-~~~~- 273 (312)
T 1wwl_A 199 KFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGA--PSCDWPSQLNSLNLSF-TGLKQVP-KGLP- 273 (312)
T ss_dssp SCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCC--SCCCCCTTCCEEECTT-SCCSSCC-SSCC-
T ss_pred cCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccch--hhhhhcCCCCEEECCC-CccChhh-hhcc-
Confidence 56788888888887662 23333446778888888888754443322 2334568888888888 6777887 4444
Q ss_pred cccccccccccccCcccCCCCCCCCccceEeccCCc
Q 039990 1149 LLSLEQLKVSSCPNFTSFPEAGFPSSLLFLDIQGCP 1184 (1217)
Q Consensus 1149 l~~L~~L~l~~c~~l~~lp~~~~~~sL~~L~l~~c~ 1184 (1217)
++|++|++++| .++.+|....+++|+.|++++++
T Consensus 274 -~~L~~L~Ls~N-~l~~~p~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 274 -AKLSVLDLSYN-RLDRNPSPDELPQVGNLSLKGNP 307 (312)
T ss_dssp -SEEEEEECCSS-CCCSCCCTTTSCEEEEEECTTCT
T ss_pred -CCceEEECCCC-CCCCChhHhhCCCCCEEeccCCC
Confidence 78888888888 67777765567788888888775
No 70
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.63 E-value=8.3e-17 Score=179.29 Aligned_cols=239 Identities=9% Similarity=0.091 Sum_probs=142.0
Q ss_pred cccccceEeccCCCCcccc-cCCCCCCCccEEeecCCCCCcccccccccccCcceEeeccCCCccccccccCCCCcccEE
Q 039990 907 YLDLESLSVQSCPSLTRLW-SSGRLPVTLKCIQIEDCSNFKVLTSECQLSVAVEELTIDSCSNIESIAERFHDDACLRSI 985 (1217)
Q Consensus 907 ~~~L~~L~l~~~~~l~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L 985 (1217)
+++|+.|+++++. ++.++ ......++|+.|++++|......+ +..+++|++|++++|. +..++. .++|++|
T Consensus 33 ~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~-l~~l~~----~~~L~~L 104 (317)
T 3o53_A 33 AWNVKELDLSGNP-LSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY-VQELLV----GPSIETL 104 (317)
T ss_dssp GGGCSEEECTTSC-CCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSE-EEEEEE----CTTCCEE
T ss_pred CCCCCEEECcCCc-cCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCc-cccccC----CCCcCEE
Confidence 3457777777653 33332 122344567777777765544333 6677777777777753 444442 3677777
Q ss_pred EEcCCCCCccccccCCCCCCcceEEecCCCCCcccCCCCC--CCCcceEEEccCcCcccCCC-C-CCCCCcceEeeccCC
Q 039990 986 RLSYCKNLKSLPKGLNNLSHLHRRSIQGCHNLVSLPEDAL--PSNVVDVSIEDCDKLKAPLP-T-GKLSSLQLLTLIECP 1061 (1217)
Q Consensus 986 ~L~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~~~~l~~~~~-~-~~l~~L~~L~l~~c~ 1061 (1217)
++++|. +..++. ..+++|+.|++++|. ++.++...+ .++|+.|++++|.....+.. + ..+++|++|++++|.
T Consensus 105 ~l~~n~-l~~~~~--~~~~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~ 180 (317)
T 3o53_A 105 HAANNN-ISRVSC--SRGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180 (317)
T ss_dssp ECCSSC-CSEEEE--CCCSSCEEEECCSSC-CCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred ECCCCc-cCCcCc--cccCCCCEEECCCCC-CCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc
Confidence 777754 344432 235667777777753 454443222 35777777777765443211 1 356777777777754
Q ss_pred CccccCCCCCCCCCCeEEecCCCCCccccccccccCCcccceeeccCCCccccccccccCCCCCCcceEeecCCCCCc--
Q 039990 1062 GIVFFPEEGLSTNLTDLEISGDNIYKPLVKWGFDKFSSLRKHCINRCSDAVSFPEVEKGVILPTSLTLIRISDFPKLE-- 1139 (1217)
Q Consensus 1062 ~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~-- 1139 (1217)
+..++....+++|++|++++|...... . .+..+++|++|++++| .+..+|. .+..+++|+.|++++ |.+.
T Consensus 181 -l~~~~~~~~l~~L~~L~Ls~N~l~~l~-~-~~~~l~~L~~L~L~~N-~l~~l~~---~~~~l~~L~~L~l~~-N~~~~~ 252 (317)
T 3o53_A 181 -IYDVKGQVVFAKLKTLDLSSNKLAFMG-P-EFQSAAGVTWISLRNN-KLVLIEK---ALRFSQNLEHFDLRG-NGFHCG 252 (317)
T ss_dssp -CCEEECCCCCTTCCEEECCSSCCCEEC-G-GGGGGTTCSEEECTTS-CCCEECT---TCCCCTTCCEEECTT-CCCBHH
T ss_pred -CcccccccccccCCEEECCCCcCCcch-h-hhcccCcccEEECcCC-cccchhh---HhhcCCCCCEEEccC-CCccCc
Confidence 444454455777777777777655432 2 2667777777777775 3445554 345567777777777 3443
Q ss_pred ccCccccCCcccccccccccccCcccC
Q 039990 1140 RLSSKGFHYLLSLEQLKVSSCPNFTSF 1166 (1217)
Q Consensus 1140 ~l~~~~~~~l~~L~~L~l~~c~~l~~l 1166 (1217)
.++ .++..++.|+.|++.+|..++..
T Consensus 253 ~~~-~~~~~~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 253 TLR-DFFSKNQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp HHH-HHHHTCHHHHHHHHHHHHHHHSS
T ss_pred CHH-HHHhccccceEEECCCchhccCC
Confidence 334 56667777777777766655554
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.62 E-value=1.1e-15 Score=180.37 Aligned_cols=234 Identities=14% Similarity=0.099 Sum_probs=137.6
Q ss_pred CCCCccEEeecCCCCCcccccccccccCcceEeeccCCCccccccccCCCCcccEEEEcCCCCCccccccCCCCCCcceE
Q 039990 930 LPVTLKCIQIEDCSNFKVLTSECQLSVAVEELTIDSCSNIESIAERFHDDACLRSIRLSYCKNLKSLPKGLNNLSHLHRR 1009 (1217)
Q Consensus 930 ~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L 1009 (1217)
.+++|+.|++++|......|..+..+++|++|++++|......+ +..+++|++|+|++| .+..+|. .++|+.|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N-~l~~l~~----~~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN-YVQELLV----GPSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSS-EEEEEEE----CTTCCEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCC-cCCCCCC----CCCcCEE
Confidence 34478888888876666556677778888888888765433333 566778888888875 3555543 3777888
Q ss_pred EecCCCCCcccCCCCCCCCcceEEEccCcCccc-CCCCCCCCCcceEeeccCCCccccCCC--CCCCCCCeEEecCCCCC
Q 039990 1010 SIQGCHNLVSLPEDALPSNVVDVSIEDCDKLKA-PLPTGKLSSLQLLTLIECPGIVFFPEE--GLSTNLTDLEISGDNIY 1086 (1217)
Q Consensus 1010 ~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~-~~~~~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~~~~~ 1086 (1217)
++++|. ++.++...+ ++|+.|++++|..... +..+..+++|++|++++|......|.. ..+++|++|++++|...
T Consensus 105 ~L~~N~-l~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 105 HAANNN-ISRVSCSRG-QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp ECCSSC-CCCEEECCC-SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred ECcCCc-CCCCCcccc-CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 887754 555544332 4677777777665443 223355677777777765433333322 13566777777776655
Q ss_pred ccccccccccCCcccceeeccCCCccccccccccCCCCCCcceEeecCCCCCcccCccccCCcccccccccccccCc-cc
Q 039990 1087 KPLVKWGFDKFSSLRKHCINRCSDAVSFPEVEKGVILPTSLTLIRISDFPKLERLSSKGFHYLLSLEQLKVSSCPNF-TS 1165 (1217)
Q Consensus 1087 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~L~~L~l~~c~~l-~~ 1165 (1217)
... .+..+++|++|++++|. +..+|. .+..+++|+.|++++ |.+..+| ..+..+++|+.|++++|+.. ..
T Consensus 183 ~~~---~~~~l~~L~~L~Ls~N~-l~~~~~---~~~~l~~L~~L~Ls~-N~l~~lp-~~l~~l~~L~~L~l~~N~l~c~~ 253 (487)
T 3oja_A 183 DVK---GQVVFAKLKTLDLSSNK-LAFMGP---EFQSAAGVTWISLRN-NKLVLIE-KALRFSQNLEHFDLRGNGFHCGT 253 (487)
T ss_dssp EEE---CCCCCTTCCEEECCSSC-CCEECG---GGGGGTTCSEEECTT-SCCCEEC-TTCCCCTTCCEEECTTCCBCHHH
T ss_pred ccc---ccccCCCCCEEECCCCC-CCCCCH---hHcCCCCccEEEecC-CcCcccc-hhhccCCCCCEEEcCCCCCcCcc
Confidence 432 12346667777776653 334443 244556667777766 5666666 45666666777777666433 23
Q ss_pred CCCC-CCCCccceEecc
Q 039990 1166 FPEA-GFPSSLLFLDIQ 1181 (1217)
Q Consensus 1166 lp~~-~~~~sL~~L~l~ 1181 (1217)
+|.. ..+++|+.+++.
T Consensus 254 ~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 254 LRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp HHHHHTTCHHHHHHHHH
T ss_pred hHHHHHhCCCCcEEecc
Confidence 3321 233444444443
No 72
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.62 E-value=1.1e-17 Score=205.60 Aligned_cols=387 Identities=13% Similarity=0.062 Sum_probs=174.0
Q ss_pred CCCCccEEEEccCCCccc-c-----------------CCCCCcccEEEEccCCCcccc--CC-CCCCCccceeecccccc
Q 039990 747 HLPSLEEIVIAGCMHLAV-S-----------------LPSLPALCTMEIDGCKRLVCD--GP-SESKSLNEMALCNISKF 805 (1217)
Q Consensus 747 ~l~~L~~L~l~~c~~l~~-~-----------------~~~l~~L~~L~l~~~~~~~~~--~~-~~~~~L~~L~l~~~~~l 805 (1217)
.+++|+.|++.+|+.... . ...+++|++|++++|...... .. ..+++|++|++.+|..+
T Consensus 64 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~ 143 (594)
T 2p1m_B 64 RFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGF 143 (594)
T ss_dssp HCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEE
T ss_pred hCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCC
Confidence 467899999999875431 1 123667888888776522111 11 13567777777777655
Q ss_pred ccccccccc-cccceeeeccccCCCcccccc----ccccCCCcccEEEEeccC-Cccc--ccc-cCCCCCccEEEecccC
Q 039990 806 ENWSMENLV-RFGFYSVDTSKDCNALTSLTD----GMIHNNVRLEVLRIIGCH-SLKS--IAR-EHLPSSLKEIELEYCE 876 (1217)
Q Consensus 806 ~~~~~~~~~-~~~~l~~L~l~~c~~l~~l~~----~~~~~l~~L~~L~l~~c~-~l~~--i~~-~~~~~~L~~L~l~~~~ 876 (1217)
.......+. .+++|+.|.+++|. ++.... .....+++|++|++++|. .+.. +.. ....++|++|++.+|.
T Consensus 144 ~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~ 222 (594)
T 2p1m_B 144 STDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAV 222 (594)
T ss_dssp EHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTS
T ss_pred CHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCC
Confidence 543333332 46677777777765 332211 123356677777777664 1110 000 0113567777776664
Q ss_pred cccccccCCCCCCCCCcccccccCCCCCcccccccceEeccCCC------CcccccCCCCCCCccEE-eecCCCCCcccc
Q 039990 877 IQQCVLDDGENSCASPSVLEKNINNSSSSTYLDLESLSVQSCPS------LTRLWSSGRLPVTLKCI-QIEDCSNFKVLT 949 (1217)
Q Consensus 877 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~------l~~l~~~~~~~~~L~~L-~l~~~~~l~~~~ 949 (1217)
....++... ..+++|+.|.+..|.. +..+......+++|+.| .+.+. ....++
T Consensus 223 ~~~~l~~~~-------------------~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~-~~~~l~ 282 (594)
T 2p1m_B 223 PLEKLATLL-------------------QRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDA-VPAYLP 282 (594)
T ss_dssp CHHHHHHHH-------------------HHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTC-CGGGGG
T ss_pred cHHHHHHHH-------------------hcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCccc-chhhHH
Confidence 333221100 0123355555444321 00000001112234444 22211 112233
Q ss_pred cccccccCcceEeeccCCCccc--cccccCCCCcccEEEEcCCCCCccccccCCCCCCcceEEecC--------CCCCcc
Q 039990 950 SECQLSVAVEELTIDSCSNIES--IAERFHDDACLRSIRLSYCKNLKSLPKGLNNLSHLHRRSIQG--------CHNLVS 1019 (1217)
Q Consensus 950 ~~~~~l~~L~~L~l~~~~~l~~--l~~~~~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~l~~--------c~~l~~ 1019 (1217)
..+..+++|++|++++|. +.. +......+++|++|++++|-.-..++.....+++|+.|++++ |..++.
T Consensus 283 ~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~ 361 (594)
T 2p1m_B 283 AVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTE 361 (594)
T ss_dssp GGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCH
T ss_pred HHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCH
Confidence 333355666666666665 322 122233456666666666511111111122356666666633 222221
Q ss_pred cCC---CCCCCCcceEEEccCcCccc-CC-CC-CCCCCcceEeec-----cCCCccccCCC-------CCCCCCCeEEec
Q 039990 1020 LPE---DALPSNVVDVSIEDCDKLKA-PL-PT-GKLSSLQLLTLI-----ECPGIVFFPEE-------GLSTNLTDLEIS 1081 (1217)
Q Consensus 1020 l~~---~~~~~~L~~L~l~~~~~l~~-~~-~~-~~l~~L~~L~l~-----~c~~l~~~~~~-------~~~~~L~~L~l~ 1081 (1217)
... ....++|+.|.+..+ .+.. .. .+ ..+++|++|+++ +|..++..|.. ..+++|++|+++
T Consensus 362 ~~l~~l~~~~~~L~~L~~~~~-~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~ 440 (594)
T 2p1m_B 362 QGLVSVSMGCPKLESVLYFCR-QMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLS 440 (594)
T ss_dssp HHHHHHHHHCTTCCEEEEEES-CCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECC
T ss_pred HHHHHHHHhchhHHHHHHhcC-CcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeec
Confidence 100 001245666644332 2221 00 00 135666666666 44454433221 124566666665
Q ss_pred CCCCCccccccccc-cCCcccceeeccCCCccccccccccCCCCCCcceEeecCCCCCccc-CccccCCccccccccccc
Q 039990 1082 GDNIYKPLVKWGFD-KFSSLRKHCINRCSDAVSFPEVEKGVILPTSLTLIRISDFPKLERL-SSKGFHYLLSLEQLKVSS 1159 (1217)
Q Consensus 1082 ~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l-~~~~~~~l~~L~~L~l~~ 1159 (1217)
+ ........ .+. .+++|+.|++++|........ .....+++|+.|++++|+. ... ....+..+++|++|++++
T Consensus 441 ~-~l~~~~~~-~l~~~~~~L~~L~L~~~~i~~~~~~--~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~ 515 (594)
T 2p1m_B 441 G-LLTDKVFE-YIGTYAKKMEMLSVAFAGDSDLGMH--HVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSS 515 (594)
T ss_dssp S-SCCHHHHH-HHHHHCTTCCEEEEESCCSSHHHHH--HHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEES
T ss_pred C-cccHHHHH-HHHHhchhccEeeccCCCCcHHHHH--HHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeC
Confidence 5 22221111 122 256666666666542111111 0002346666666666543 221 111233456666666666
Q ss_pred cc
Q 039990 1160 CP 1161 (1217)
Q Consensus 1160 c~ 1161 (1217)
|+
T Consensus 516 ~~ 517 (594)
T 2p1m_B 516 CS 517 (594)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 73
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.60 E-value=9.9e-18 Score=206.03 Aligned_cols=392 Identities=14% Similarity=0.115 Sum_probs=199.4
Q ss_pred CCCCcccEEEEccCCCccccCC-----------------CCCCCccceeeccccccccccccccc-cccceeeeccccCC
Q 039990 767 PSLPALCTMEIDGCKRLVCDGP-----------------SESKSLNEMALCNISKFENWSMENLV-RFGFYSVDTSKDCN 828 (1217)
Q Consensus 767 ~~l~~L~~L~l~~~~~~~~~~~-----------------~~~~~L~~L~l~~~~~l~~~~~~~~~-~~~~l~~L~l~~c~ 828 (1217)
..+++|+.|.+.+|........ ..+++|++|+++++. +....+..+. .+++|+.|.+.+|.
T Consensus 63 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~L~~~~ 141 (594)
T 2p1m_B 63 RRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV-VTDDCLELIAKSFKNFKVLVLSSCE 141 (594)
T ss_dssp HHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHHHHHHHHHCTTCCEEEEESCE
T ss_pred hhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcE-EcHHHHHHHHHhCCCCcEEeCCCcC
Confidence 3467888999888765432221 124566666666653 2222222222 35566666666665
Q ss_pred Ccccc-ccccccCCCcccEEEEeccCCcccccc-----c-CCCCCccEEEecccCcccccccCCCCCCCCCcccccccCC
Q 039990 829 ALTSL-TDGMIHNNVRLEVLRIIGCHSLKSIAR-----E-HLPSSLKEIELEYCEIQQCVLDDGENSCASPSVLEKNINN 901 (1217)
Q Consensus 829 ~l~~l-~~~~~~~l~~L~~L~l~~c~~l~~i~~-----~-~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 901 (1217)
.++.. ......++++|++|++++|. +..... . ...++|++|++++|.. .+... .+...
T Consensus 142 ~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~--~~~~~---------~l~~l--- 206 (594)
T 2p1m_B 142 GFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLAS--EVSFS---------ALERL--- 206 (594)
T ss_dssp EEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCS--CCCHH---------HHHHH---
T ss_pred CCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCC--cCCHH---------HHHHH---
Confidence 44331 11223355666666666554 222110 0 1224555555555530 00000 00000
Q ss_pred CCCcccccccceEeccCCCCcccccCCCCCCCccEEeecCCCC------CcccccccccccCcceE-eeccCCCcccccc
Q 039990 902 SSSSTYLDLESLSVQSCPSLTRLWSSGRLPVTLKCIQIEDCSN------FKVLTSECQLSVAVEEL-TIDSCSNIESIAE 974 (1217)
Q Consensus 902 ~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~------l~~~~~~~~~l~~L~~L-~l~~~~~l~~l~~ 974 (1217)
...+++|+.|.+++|..+..++......++|+.|++..|.. +..++..+.++++|+.| .+.+. ....++.
T Consensus 207 --~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~-~~~~l~~ 283 (594)
T 2p1m_B 207 --VTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDA-VPAYLPA 283 (594)
T ss_dssp --HHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTC-CGGGGGG
T ss_pred --HHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCccc-chhhHHH
Confidence 00123455555555544333322222233455555444432 11122233445555555 22221 1123333
Q ss_pred ccCCCCcccEEEEcCCCCCcc--ccccCCCCCCcceEEecCCCCCcccCCC-CCCCCcceEEEccC--------cCcccC
Q 039990 975 RFHDDACLRSIRLSYCKNLKS--LPKGLNNLSHLHRRSIQGCHNLVSLPED-ALPSNVVDVSIEDC--------DKLKAP 1043 (1217)
Q Consensus 975 ~~~~l~~L~~L~L~~c~~l~~--l~~~l~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~~--------~~l~~~ 1043 (1217)
....+++|++|++++|. +.. ++..+..+++|++|++++|-.-..++.. ...++|++|++.+| ..+...
T Consensus 284 ~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~ 362 (594)
T 2p1m_B 284 VYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQ 362 (594)
T ss_dssp GHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHH
T ss_pred HHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHH
Confidence 33346888999998887 443 2233567888999999887211111110 11367889988553 222220
Q ss_pred --CCC-CCCCCcceEeeccCCCccccCCC---CCCCCCCeEEec-----CCCCCccccc-----cccccCCcccceeecc
Q 039990 1044 --LPT-GKLSSLQLLTLIECPGIVFFPEE---GLSTNLTDLEIS-----GDNIYKPLVK-----WGFDKFSSLRKHCINR 1107 (1217)
Q Consensus 1044 --~~~-~~l~~L~~L~l~~c~~l~~~~~~---~~~~~L~~L~l~-----~~~~~~~~~~-----~~~~~l~~L~~L~l~~ 1107 (1217)
..+ ..+++|++|.+. |+.++..... ..+++|++|+++ +|+..+..+. ..+..+++|+.|++++
T Consensus 363 ~l~~l~~~~~~L~~L~~~-~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~ 441 (594)
T 2p1m_B 363 GLVSVSMGCPKLESVLYF-CRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG 441 (594)
T ss_dssp HHHHHHHHCTTCCEEEEE-ESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS
T ss_pred HHHHHHHhchhHHHHHHh-cCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC
Confidence 000 247888888654 4444322111 136889999998 4445542211 1256788999999976
Q ss_pred CCCccccccccccC-CCCCCcceEeecCCCCCcccCcccc-CCcccccccccccccCcccCC---CCCCCCccceEeccC
Q 039990 1108 CSDAVSFPEVEKGV-ILPTSLTLIRISDFPKLERLSSKGF-HYLLSLEQLKVSSCPNFTSFP---EAGFPSSLLFLDIQG 1182 (1217)
Q Consensus 1108 ~~~l~~~~~~~~~~-~~~~~L~~L~l~~c~~l~~l~~~~~-~~l~~L~~L~l~~c~~l~~lp---~~~~~~sL~~L~l~~ 1182 (1217)
.+....- ..+ ..+++|+.|++++|. +.......+ .++++|++|++++|+. +... ....+++|+.|++++
T Consensus 442 --~l~~~~~--~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~ 515 (594)
T 2p1m_B 442 --LLTDKVF--EYIGTYAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSS 515 (594)
T ss_dssp --SCCHHHH--HHHHHHCTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEES
T ss_pred --cccHHHH--HHHHHhchhccEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeC
Confidence 2222111 111 136889999999864 433221222 5689999999999964 3321 112368999999999
Q ss_pred Ccc
Q 039990 1183 CPL 1185 (1217)
Q Consensus 1183 c~~ 1185 (1217)
|+.
T Consensus 516 ~~~ 518 (594)
T 2p1m_B 516 CSV 518 (594)
T ss_dssp SCC
T ss_pred CCC
Confidence 986
No 74
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.60 E-value=2.3e-17 Score=195.59 Aligned_cols=338 Identities=16% Similarity=0.115 Sum_probs=205.6
Q ss_pred cccceeeeccccCCCcc-----ccccccccCCCcccEEEEeccCCcccccc---c-CCC---CCccEEEecccCccc---
Q 039990 815 RFGFYSVDTSKDCNALT-----SLTDGMIHNNVRLEVLRIIGCHSLKSIAR---E-HLP---SSLKEIELEYCEIQQ--- 879 (1217)
Q Consensus 815 ~~~~l~~L~l~~c~~l~-----~l~~~~~~~l~~L~~L~l~~c~~l~~i~~---~-~~~---~~L~~L~l~~~~~~~--- 879 (1217)
.+++++.|.+++|. ++ .++. .+..+++|++|++++|. +..... . .+. ++|++|++++|....
T Consensus 26 ~~~~L~~L~L~~~~-l~~~~~~~l~~-~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~ 102 (461)
T 1z7x_W 26 LLQQCQVVRLDDCG-LTEARCKDISS-ALRVNPALAELNLRSNE-LGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGC 102 (461)
T ss_dssp HHTTCSEEEEESSC-CCHHHHHHHHH-HHHTCTTCCEEECTTCC-CHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGH
T ss_pred hcCCccEEEccCCC-CCHHHHHHHHH-HHHhCCCcCEEeCCCCc-CChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHH
Confidence 34455555555554 22 2222 25667777777777754 322111 1 111 257778877776432
Q ss_pred -ccccCCCCCCCCCcccccccCCCCCcccccccceEeccCCCCccc-----cc-CCCCCCCccEEeecCCCCCcc----c
Q 039990 880 -CVLDDGENSCASPSVLEKNINNSSSSTYLDLESLSVQSCPSLTRL-----WS-SGRLPVTLKCIQIEDCSNFKV----L 948 (1217)
Q Consensus 880 -~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-----~~-~~~~~~~L~~L~l~~~~~l~~----~ 948 (1217)
.++.. + ..+++|++|+++++. +... .. ......+|++|++++|..... +
T Consensus 103 ~~l~~~--------------l-----~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 103 GVLSST--------------L-----RTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp HHHHHH--------------T-----TSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred HHHHHH--------------H-----ccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 11111 0 124457788887765 3211 00 012234799999999865542 3
Q ss_pred ccccccccCcceEeeccCCCccccccccC-----CCCcccEEEEcCCCCCc----cccccCCCCCCcceEEecCCCCCcc
Q 039990 949 TSECQLSVAVEELTIDSCSNIESIAERFH-----DDACLRSIRLSYCKNLK----SLPKGLNNLSHLHRRSIQGCHNLVS 1019 (1217)
Q Consensus 949 ~~~~~~l~~L~~L~l~~~~~l~~l~~~~~-----~l~~L~~L~L~~c~~l~----~l~~~l~~l~~L~~L~l~~c~~l~~ 1019 (1217)
+..+..+++|++|++++|..-...+..+. ..++|++|++++|.... .++..+..+++|++|++++|. ++.
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~ 241 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK-LGD 241 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB-CHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc-CCh
Confidence 55566788999999999863322222111 25689999999975433 246667788999999999974 443
Q ss_pred c-----CC--CCCCCCcceEEEccCcCccc-----CCCCCCCCCcceEeeccCCCcc----ccCCC--CCCCCCCeEEec
Q 039990 1020 L-----PE--DALPSNVVDVSIEDCDKLKA-----PLPTGKLSSLQLLTLIECPGIV----FFPEE--GLSTNLTDLEIS 1081 (1217)
Q Consensus 1020 l-----~~--~~~~~~L~~L~l~~~~~l~~-----~~~~~~l~~L~~L~l~~c~~l~----~~~~~--~~~~~L~~L~l~ 1081 (1217)
. .. ....++|+.|++++|..... +..+..+++|++|++++|..-. .+... ...++|++|+++
T Consensus 242 ~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~ 321 (461)
T 1z7x_W 242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVK 321 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcC
Confidence 2 11 11246899999999964432 1222458899999999975321 11111 123699999999
Q ss_pred CCCCCcc----ccccccccCCcccceeeccCCCcccc-cccc-ccCC-CCCCcceEeecCCCCCc-----ccCccccCCc
Q 039990 1082 GDNIYKP----LVKWGFDKFSSLRKHCINRCSDAVSF-PEVE-KGVI-LPTSLTLIRISDFPKLE-----RLSSKGFHYL 1149 (1217)
Q Consensus 1082 ~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~l~~~-~~~~-~~~~-~~~~L~~L~l~~c~~l~-----~l~~~~~~~l 1149 (1217)
+|..... ++. .+..+++|++|++++|. +... +... ..+. ..++|++|++++| .+. .++ ..+..+
T Consensus 322 ~n~l~~~~~~~l~~-~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~-~~l~~~ 397 (461)
T 1z7x_W 322 SCSFTAACCSHFSS-VLAQNRFLLELQISNNR-LEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLA-ATLLAN 397 (461)
T ss_dssp TSCCBGGGHHHHHH-HHHHCSSCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHH-HHHHHC
T ss_pred CCCCchHHHHHHHH-HHhhCCCccEEEccCCc-cccccHHHHHHHHcCCCCceEEEECCCC-CCChhhHHHHH-HHHHhC
Confidence 9987643 222 46678999999999984 3332 1100 1111 2579999999995 666 566 667788
Q ss_pred ccccccccccccCcccC---------CCCCCCCccceEeccCC
Q 039990 1150 LSLEQLKVSSCPNFTSF---------PEAGFPSSLLFLDIQGC 1183 (1217)
Q Consensus 1150 ~~L~~L~l~~c~~l~~l---------p~~~~~~sL~~L~l~~c 1183 (1217)
++|++|++++| .++.. |. ..++|+.|.+.++
T Consensus 398 ~~L~~L~l~~N-~i~~~~~~~l~~~l~~--~~~~L~~L~~~~~ 437 (461)
T 1z7x_W 398 HSLRELDLSNN-CLGDAGILQLVESVRQ--PGCLLEQLVLYDI 437 (461)
T ss_dssp CCCCEEECCSS-SCCHHHHHHHHHHHTS--TTCCCCEEECTTC
T ss_pred CCccEEECCCC-CCCHHHHHHHHHHhcc--CCcchhheeeccc
Confidence 99999999999 45442 22 2346777776655
No 75
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.59 E-value=1.4e-14 Score=160.78 Aligned_cols=173 Identities=14% Similarity=0.116 Sum_probs=91.2
Q ss_pred CCccEEeecCCCCCc--ccccccccccCcceEeeccCCCccccccccCCCCcccEEEEcCCCCCcccc--ccCCCCCCcc
Q 039990 932 VTLKCIQIEDCSNFK--VLTSECQLSVAVEELTIDSCSNIESIAERFHDDACLRSIRLSYCKNLKSLP--KGLNNLSHLH 1007 (1217)
Q Consensus 932 ~~L~~L~l~~~~~l~--~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~L~~c~~l~~l~--~~l~~l~~L~ 1007 (1217)
++|+.|++++|.... ..+..+..+++|++|++++|. +..++..+..+++|++|++++|. +..++ ..+..+++|+
T Consensus 52 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~ 129 (306)
T 2z66_A 52 TQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLI 129 (306)
T ss_dssp TTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEEETCTTCCEEECTTSE-EESSTTTTTTTTCTTCC
T ss_pred ccCCEEECCCCccCcccCcccccccccccCEEECCCCc-cccChhhcCCCCCCCEEECCCCc-ccccccchhhhhccCCC
Confidence 456677776654432 123445567778888887763 45566666677888888888754 44443 3567778888
Q ss_pred eEEecCCCCCcccCCCCC--CCCcceEEEccCcCcc--cCCCCCCCCCcceEeeccCCCccccCCC-CCCCCCCeEEecC
Q 039990 1008 RRSIQGCHNLVSLPEDAL--PSNVVDVSIEDCDKLK--APLPTGKLSSLQLLTLIECPGIVFFPEE-GLSTNLTDLEISG 1082 (1217)
Q Consensus 1008 ~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~~~~l~--~~~~~~~l~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~ 1082 (1217)
+|++++|. ++.++...+ .++|++|++++|.... .+..+..+++|++|++++|......+.. ..+++|++|++++
T Consensus 130 ~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 208 (306)
T 2z66_A 130 YLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 208 (306)
T ss_dssp EEECTTSC-CEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred EEECCCCc-CCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCC
Confidence 88888764 333322111 2345555555544332 2223345556666666554322221211 2344555555555
Q ss_pred CCCCccccccccccCCcccceeeccC
Q 039990 1083 DNIYKPLVKWGFDKFSSLRKHCINRC 1108 (1217)
Q Consensus 1083 ~~~~~~~~~~~~~~l~~L~~L~l~~~ 1108 (1217)
|......+ ..+..+++|++|++++|
T Consensus 209 N~l~~~~~-~~~~~l~~L~~L~L~~N 233 (306)
T 2z66_A 209 NNFFSLDT-FPYKCLNSLQVLDYSLN 233 (306)
T ss_dssp SCCSBCCS-GGGTTCTTCCEEECTTS
T ss_pred CccCccCh-hhccCcccCCEeECCCC
Confidence 44332221 12344444444444444
No 76
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.57 E-value=4.8e-14 Score=159.26 Aligned_cols=228 Identities=21% Similarity=0.191 Sum_probs=150.1
Q ss_pred CCCcccccCCCCCCCccEEeecCCCCCcccc-cccccccCcceEeeccCCCcccccc-ccCCCCcccEEEEcCCCCCccc
Q 039990 919 PSLTRLWSSGRLPVTLKCIQIEDCSNFKVLT-SECQLSVAVEELTIDSCSNIESIAE-RFHDDACLRSIRLSYCKNLKSL 996 (1217)
Q Consensus 919 ~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~L~~c~~l~~l 996 (1217)
..++.+|. ..+.++++|++++|+ ++.++ ..|.++++|++|++++|...+.++. .+.++++|.++.+.+++.+..+
T Consensus 19 ~~Lt~iP~--~l~~~l~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l 95 (350)
T 4ay9_X 19 SKVTEIPS--DLPRNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYI 95 (350)
T ss_dssp TTCCSCCT--TCCTTCSEEEEESCC-CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEE
T ss_pred CCCCccCc--CcCCCCCEEEccCCc-CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccccc
Confidence 34666643 346789999999875 44555 4678899999999999887777765 4556888887766666777777
Q ss_pred -cccCCCCCCcceEEecCCCCCcccCCCCCC--CCcceEEEccCcCcccCCC--CCCC-CCcceEeeccCCCccccCCC-
Q 039990 997 -PKGLNNLSHLHRRSIQGCHNLVSLPEDALP--SNVVDVSIEDCDKLKAPLP--TGKL-SSLQLLTLIECPGIVFFPEE- 1069 (1217)
Q Consensus 997 -~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~--~~L~~L~l~~~~~l~~~~~--~~~l-~~L~~L~l~~c~~l~~~~~~- 1069 (1217)
|..+..+++|++|++++| .++.++...+. .++..|++.++..+..... +..+ ..++.|++++| .+..++..
T Consensus 96 ~~~~f~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N-~i~~i~~~~ 173 (350)
T 4ay9_X 96 NPEAFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN-GIQEIHNSA 173 (350)
T ss_dssp CTTSBCCCTTCCEEEEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS-CCCEECTTS
T ss_pred Cchhhhhcccccccccccc-ccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccc-cccCCChhh
Confidence 566788999999999986 46666654333 3555666666555544211 1233 35667777664 34455444
Q ss_pred CCCCCCCeEEecCCCCCccccccccccCCcccceeeccCCCccccccccccCCCCCCcceEeecCCCCCcccCccccCCc
Q 039990 1070 GLSTNLTDLEISGDNIYKPLVKWGFDKFSSLRKHCINRCSDAVSFPEVEKGVILPTSLTLIRISDFPKLERLSSKGFHYL 1149 (1217)
Q Consensus 1070 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l 1149 (1217)
....+|++|++.+++.++.++...|+.+++|++|++++| .++.+|. ..+.+|+.|.+.++++++.+| .+.++
T Consensus 174 f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~-----~~~~~L~~L~~l~~~~l~~lP--~l~~l 245 (350)
T 4ay9_X 174 FNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPS-----YGLENLKKLRARSTYNLKKLP--TLEKL 245 (350)
T ss_dssp STTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCS-----SSCTTCCEEECTTCTTCCCCC--CTTTC
T ss_pred ccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccCh-----hhhccchHhhhccCCCcCcCC--CchhC
Confidence 234567777777666666666656677777777777764 4666665 335666666666667777776 46666
Q ss_pred cccccccccc
Q 039990 1150 LSLEQLKVSS 1159 (1217)
Q Consensus 1150 ~~L~~L~l~~ 1159 (1217)
++|+.+++.+
T Consensus 246 ~~L~~l~l~~ 255 (350)
T 4ay9_X 246 VALMEASLTY 255 (350)
T ss_dssp CSCCEEECSC
T ss_pred cChhhCcCCC
Confidence 7777766654
No 77
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.57 E-value=4.6e-14 Score=154.16 Aligned_cols=198 Identities=15% Similarity=0.117 Sum_probs=107.8
Q ss_pred ccccCcceEeeccCCCccccccccCCCCcccEEEEcCCCCCccccccCCCCCCcceEEecCCCCCcccCCCCCCCCcceE
Q 039990 953 QLSVAVEELTIDSCSNIESIAERFHDDACLRSIRLSYCKNLKSLPKGLNNLSHLHRRSIQGCHNLVSLPEDALPSNVVDV 1032 (1217)
Q Consensus 953 ~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L 1032 (1217)
.+++++++++++++ .++.+|..+. ++++.|++++|......+..+..+++|+.|++++| .++.++.....++|++|
T Consensus 7 ~~l~~l~~l~~~~~-~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L 82 (290)
T 1p9a_G 7 SKVASHLEVNCDKR-NLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVDGTLPVLGTL 82 (290)
T ss_dssp ECSTTCCEEECTTS-CCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECCSCCTTCCEE
T ss_pred cccCCccEEECCCC-CCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccCCCCCCcCCEE
Confidence 44556666666653 4455554432 56677777765533333455666777777777764 35555543334455555
Q ss_pred EEccCcCcccCCCCCCCCCcceEeeccCCCccccCCC--CCCCCCCeEEecCCCCCccccccccccCCcccceeeccCCC
Q 039990 1033 SIEDCDKLKAPLPTGKLSSLQLLTLIECPGIVFFPEE--GLSTNLTDLEISGDNIYKPLVKWGFDKFSSLRKHCINRCSD 1110 (1217)
Q Consensus 1033 ~l~~~~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 1110 (1217)
++++|.....+..+..+++|++|++++| .+..++.. ..+++|++|++++|.... ++...|..+++|+.|++++| .
T Consensus 83 ~Ls~N~l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N-~ 159 (290)
T 1p9a_G 83 DLSHNQLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGNELKT-LPPGLLTPTPKLEKLSLANN-N 159 (290)
T ss_dssp ECCSSCCSSCCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECTTS-C
T ss_pred ECCCCcCCcCchhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCCCCCc-cChhhcccccCCCEEECCCC-c
Confidence 5555544433333456667777777664 33334322 335566666666654443 22224555666666666664 3
Q ss_pred ccccccccccCCCCCCcceEeecCCCCCcccCccccCCccccccccccccc
Q 039990 1111 AVSFPEVEKGVILPTSLTLIRISDFPKLERLSSKGFHYLLSLEQLKVSSCP 1161 (1217)
Q Consensus 1111 l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~L~~L~l~~c~ 1161 (1217)
+..+|. ..+..+++|+.|++++ |.++.+| .++..+++|+.|++++|+
T Consensus 160 l~~l~~--~~~~~l~~L~~L~L~~-N~l~~ip-~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 160 LTELPA--GLLNGLENLDTLLLQE-NSLYTIP-KGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CSCCCT--TTTTTCTTCCEEECCS-SCCCCCC-TTTTTTCCCSEEECCSCC
T ss_pred CCccCH--HHhcCcCCCCEEECCC-CcCCccC-hhhcccccCCeEEeCCCC
Confidence 444443 2334456666666665 5566665 444455566666666554
No 78
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.56 E-value=5.3e-14 Score=153.34 Aligned_cols=204 Identities=16% Similarity=0.154 Sum_probs=130.5
Q ss_pred CCCCccEEeecCCCCCcccccccccccCcceEeeccCCCccccccccCCCCcccEEEEcCCCCCccccccCCCCCCcceE
Q 039990 930 LPVTLKCIQIEDCSNFKVLTSECQLSVAVEELTIDSCSNIESIAERFHDDACLRSIRLSYCKNLKSLPKGLNNLSHLHRR 1009 (1217)
Q Consensus 930 ~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L 1009 (1217)
.+++|+.|++++|......+..+.++++|++|++++|......+..+..+++|++|++++|......+..+..+++|++|
T Consensus 26 l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (276)
T 2z62_A 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105 (276)
T ss_dssp SCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred CCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEE
Confidence 45678888888876555545567778888888888874333333456667888888888865443334667777888888
Q ss_pred EecCCCCCcccCCCCCCCCcceEEEccCcCcccCCCCCCCCCcceEeeccCCCcc-ccCCC-CCCCCCCeEEecCCCCCc
Q 039990 1010 SIQGCHNLVSLPEDALPSNVVDVSIEDCDKLKAPLPTGKLSSLQLLTLIECPGIV-FFPEE-GLSTNLTDLEISGDNIYK 1087 (1217)
Q Consensus 1010 ~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~c~~l~-~~~~~-~~~~~L~~L~l~~~~~~~ 1087 (1217)
++++|. ++.++. ..+..+++|++|++++|.... .+|.. ..+++|++|++++|....
T Consensus 106 ~l~~n~-l~~~~~---------------------~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~ 163 (276)
T 2z62_A 106 VAVETN-LASLEN---------------------FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163 (276)
T ss_dssp ECTTSC-CCCSTT---------------------CCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred ECCCCC-ccccCc---------------------hhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCc
Confidence 887753 444332 223566777777777754322 12322 446777777777776554
Q ss_pred cccccccccCCccc----ceeeccCCCccccccccccCCCCCCcceEeecCCCCCcccCccccCCccccccccccccc
Q 039990 1088 PLVKWGFDKFSSLR----KHCINRCSDAVSFPEVEKGVILPTSLTLIRISDFPKLERLSSKGFHYLLSLEQLKVSSCP 1161 (1217)
Q Consensus 1088 ~~~~~~~~~l~~L~----~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~L~~L~l~~c~ 1161 (1217)
..+ ..+..+++|+ .|++++|. +..++. ..+ ...+|+.|++++ +.++.+|...+.++++|+.|++++|+
T Consensus 164 ~~~-~~~~~l~~L~~l~l~L~ls~n~-l~~~~~--~~~-~~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 164 IYC-TDLRVLHQMPLLNLSLDLSLNP-MNFIQP--GAF-KEIRLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp ECG-GGGHHHHTCTTCCEEEECCSSC-CCEECT--TSS-CSCCEEEEECCS-SCCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred CCH-HHhhhhhhccccceeeecCCCc-ccccCc--ccc-CCCcccEEECCC-CceeecCHhHhcccccccEEEccCCc
Confidence 332 2455555555 67777754 444443 122 234788888888 56888876667788888888888874
No 79
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.55 E-value=4.5e-17 Score=193.17 Aligned_cols=344 Identities=17% Similarity=0.164 Sum_probs=200.5
Q ss_pred ceeeeccccCCCccccc-cccccCCCcccEEEEeccCCcccc-----cc-cCCCCCccEEEecccCcccccccCCCCCCC
Q 039990 818 FYSVDTSKDCNALTSLT-DGMIHNNVRLEVLRIIGCHSLKSI-----AR-EHLPSSLKEIELEYCEIQQCVLDDGENSCA 890 (1217)
Q Consensus 818 ~l~~L~l~~c~~l~~l~-~~~~~~l~~L~~L~l~~c~~l~~i-----~~-~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~ 890 (1217)
.++.|++++ +.++..+ ..++..+++|++|++++|. +... +. ....++|++|++++|......+..
T Consensus 4 ~l~~L~Ls~-~~l~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~------ 75 (461)
T 1z7x_W 4 DIQSLDIQC-EELSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNELGDVGVHC------ 75 (461)
T ss_dssp EEEEEEEES-CCCCHHHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHH------
T ss_pred cceehhhhh-cccCchhHHHHHhhcCCccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHH------
Confidence 344555533 3444443 2347789999999999987 3322 11 223478999999998743321100
Q ss_pred CCcccccccCCCCCcccccccceEeccCCCCc----ccccCCCCCCCccEEeecCCCCCccccccc-----ccccCcceE
Q 039990 891 SPSVLEKNINNSSSSTYLDLESLSVQSCPSLT----RLWSSGRLPVTLKCIQIEDCSNFKVLTSEC-----QLSVAVEEL 961 (1217)
Q Consensus 891 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~----~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~-----~~l~~L~~L 961 (1217)
+..... ...++|++|++++|.--. .++......++|+.|++++|......+..+ ...++|++|
T Consensus 76 ----l~~~l~----~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L 147 (461)
T 1z7x_W 76 ----VLQGLQ----TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKL 147 (461)
T ss_dssp ----HHHTTC----STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred ----HHHHHh----hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEE
Confidence 000000 001148888888875321 223333445688888888876433222211 234578888
Q ss_pred eeccCCCcc----ccccccCCCCcccEEEEcCCCCCccccccCC-----CCCCcceEEecCCCCCcc-----cCC-CCCC
Q 039990 962 TIDSCSNIE----SIAERFHDDACLRSIRLSYCKNLKSLPKGLN-----NLSHLHRRSIQGCHNLVS-----LPE-DALP 1026 (1217)
Q Consensus 962 ~l~~~~~l~----~l~~~~~~l~~L~~L~L~~c~~l~~l~~~l~-----~l~~L~~L~l~~c~~l~~-----l~~-~~~~ 1026 (1217)
++++|.... .++..+..+++|++|++++|......+..+. ..++|++|++++|. ++. ++. ....
T Consensus 148 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~ 226 (461)
T 1z7x_W 148 QLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCG-VTSDNCRDLCGIVASK 226 (461)
T ss_dssp ECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSC-CBTTHHHHHHHHHHHC
T ss_pred ECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCC-CcHHHHHHHHHHHHhC
Confidence 888875433 2344455578888899888763222122221 35688888888874 443 221 0123
Q ss_pred CCcceEEEccCcCccc------CCCCCCCCCcceEeeccCCCccc-----cCCC-CCCCCCCeEEecCCCCCcccc----
Q 039990 1027 SNVVDVSIEDCDKLKA------PLPTGKLSSLQLLTLIECPGIVF-----FPEE-GLSTNLTDLEISGDNIYKPLV---- 1090 (1217)
Q Consensus 1027 ~~L~~L~l~~~~~l~~------~~~~~~l~~L~~L~l~~c~~l~~-----~~~~-~~~~~L~~L~l~~~~~~~~~~---- 1090 (1217)
++|++|++++|..... +.....+++|++|++++|. ++. ++.. ..+++|++|++++|.......
T Consensus 227 ~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~ 305 (461)
T 1z7x_W 227 ASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG-ITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLC 305 (461)
T ss_dssp TTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHH
T ss_pred CCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCC-CCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHH
Confidence 6888888888853221 0111357888889888874 333 2222 236788889998886643211
Q ss_pred ccccccCCcccceeeccCCCccc----cccccccCCCCCCcceEeecCCCCCcccCccccC-----Cccccccccccccc
Q 039990 1091 KWGFDKFSSLRKHCINRCSDAVS----FPEVEKGVILPTSLTLIRISDFPKLERLSSKGFH-----YLLSLEQLKVSSCP 1161 (1217)
Q Consensus 1091 ~~~~~~l~~L~~L~l~~~~~l~~----~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~-----~l~~L~~L~l~~c~ 1161 (1217)
.......++|++|++++|..... ++. .+..+++|++|++++| .+.......+. ..++|++|++++|
T Consensus 306 ~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~---~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n- 380 (461)
T 1z7x_W 306 ETLLEPGCQLESLWVKSCSFTAACCSHFSS---VLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADC- 380 (461)
T ss_dssp HHHTSTTCCCCEEECTTSCCBGGGHHHHHH---HHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-
T ss_pred HHhccCCccceeeEcCCCCCchHHHHHHHH---HHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCC-
Confidence 11112336888899988763322 222 3345688899999884 66554322222 1568899999988
Q ss_pred Ccc-----cCCCC-CCCCccceEeccCCc
Q 039990 1162 NFT-----SFPEA-GFPSSLLFLDIQGCP 1184 (1217)
Q Consensus 1162 ~l~-----~lp~~-~~~~sL~~L~l~~c~ 1184 (1217)
.++ .+|.. ..+++|+.|++++|+
T Consensus 381 ~i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 381 DVSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp CCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred CCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 565 45543 336788999998885
No 80
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.53 E-value=2e-14 Score=169.61 Aligned_cols=234 Identities=11% Similarity=0.066 Sum_probs=136.0
Q ss_pred cceeeeccccCCCccccccccccCCCcccEEEEeccCCcccccccCCCCCccEEEecccCcccccccCCCCCCCCCcccc
Q 039990 817 GFYSVDTSKDCNALTSLTDGMIHNNVRLEVLRIIGCHSLKSIAREHLPSSLKEIELEYCEIQQCVLDDGENSCASPSVLE 896 (1217)
Q Consensus 817 ~~l~~L~l~~c~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~ 896 (1217)
++++.|++++ |.++.+++..+..+++|+.|++++|. +..+++....++|+.|++++|...
T Consensus 34 ~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~N~l~------------------ 93 (487)
T 3oja_A 34 WNVKELDLSG-NPLSQISAADLAPFTKLELLNLSSNV-LYETLDLESLSTLRTLDLNNNYVQ------------------ 93 (487)
T ss_dssp GGCCEEECCS-SCCCCCCGGGGTTCTTCCEEECTTSC-CEEEEECTTCTTCCEEECCSSEEE------------------
T ss_pred CCccEEEeeC-CcCCCCCHHHHhCCCCCCEEEeeCCC-CCCCcccccCCCCCEEEecCCcCC------------------
Confidence 3455555555 45666666567888888888888765 333333444566777776666421
Q ss_pred cccCCCCCcccccccceEeccCCCCcccccCCCCCCCccEEeecCCCCCcccccccccccCcceEeeccCCCcccccccc
Q 039990 897 KNINNSSSSTYLDLESLSVQSCPSLTRLWSSGRLPVTLKCIQIEDCSNFKVLTSECQLSVAVEELTIDSCSNIESIAERF 976 (1217)
Q Consensus 897 ~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~ 976 (1217)
.+++ .++|+.|++++|......+. .+++|+.|++++|......|..+
T Consensus 94 --------------------------~l~~----~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~ 140 (487)
T 3oja_A 94 --------------------------ELLV----GPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDE 140 (487)
T ss_dssp --------------------------EEEE----CTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCG
T ss_pred --------------------------CCCC----CCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhh
Confidence 1111 03566666666554443332 34567777777665444445555
Q ss_pred CCCCcccEEEEcCCCCCccccccCC-CCCCcceEEecCCCCCcccCCCCCCCCcceEEEccCcCcccCCCCCCCCCcceE
Q 039990 977 HDDACLRSIRLSYCKNLKSLPKGLN-NLSHLHRRSIQGCHNLVSLPEDALPSNVVDVSIEDCDKLKAPLPTGKLSSLQLL 1055 (1217)
Q Consensus 977 ~~l~~L~~L~L~~c~~l~~l~~~l~-~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L 1055 (1217)
..+++|++|++++|......|..+. .+++|+.|++++|. ++.++.....++|+.|++++|.....+..+..+++|+.|
T Consensus 141 ~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L 219 (487)
T 3oja_A 141 GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWI 219 (487)
T ss_dssp GGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEE
T ss_pred cCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc-cccccccccCCCCCEEECCCCCCCCCCHhHcCCCCccEE
Confidence 5567777777777554444455553 56777777777753 555554444556666666666554443444567777777
Q ss_pred eeccCCCccccCCC-CCCCCCCeEEecCCCCC-ccccccccccCCcccceeec
Q 039990 1056 TLIECPGIVFFPEE-GLSTNLTDLEISGDNIY-KPLVKWGFDKFSSLRKHCIN 1106 (1217)
Q Consensus 1056 ~l~~c~~l~~~~~~-~~~~~L~~L~l~~~~~~-~~~~~~~~~~l~~L~~L~l~ 1106 (1217)
++++|. +..+|.. ..+++|+.|++++|+.. ..++. .+..++.|+.+.+.
T Consensus 220 ~Ls~N~-l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~-~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 220 SLRNNK-LVLIEKALRFSQNLEHFDLRGNGFHCGTLRD-FFSKNQRVQTVAKQ 270 (487)
T ss_dssp ECTTSC-CCEECTTCCCCTTCCEEECTTCCBCHHHHHH-HHTTCHHHHHHHHH
T ss_pred EecCCc-CcccchhhccCCCCCEEEcCCCCCcCcchHH-HHHhCCCCcEEecc
Confidence 777754 3345543 45667777777777665 23322 34556666666664
No 81
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.53 E-value=2.2e-13 Score=153.78 Aligned_cols=194 Identities=16% Similarity=0.151 Sum_probs=137.4
Q ss_pred CCccEEeecCCCCCccccc-ccccccCcceEeeccCCCcccc-ccccCCCCcccEEEEcCCCCCcccc-ccCCCCCCcce
Q 039990 932 VTLKCIQIEDCSNFKVLTS-ECQLSVAVEELTIDSCSNIESI-AERFHDDACLRSIRLSYCKNLKSLP-KGLNNLSHLHR 1008 (1217)
Q Consensus 932 ~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~L~~c~~l~~l~-~~l~~l~~L~~ 1008 (1217)
++|+.|++++|...+.++. .|.++++|.++.+.+++.+..+ +..+..+++|++|++++|. +..+| ..+....++..
T Consensus 54 ~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~ 132 (350)
T 4ay9_X 54 GDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVL 132 (350)
T ss_dssp TTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEEC-CSSCCCCTTCCBSSCEE
T ss_pred CCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccc-cccCCchhhcccchhhh
Confidence 4677777777766665543 4566777776655555566665 4455667888888888754 44443 34455667777
Q ss_pred EEecCCCCCcccCCCCC---CCCcceEEEccCcCcccCCCCCCCCCcceEeeccCCCccccCCC--CCCCCCCeEEecCC
Q 039990 1009 RSIQGCHNLVSLPEDAL---PSNVVDVSIEDCDKLKAPLPTGKLSSLQLLTLIECPGIVFFPEE--GLSTNLTDLEISGD 1083 (1217)
Q Consensus 1009 L~l~~c~~l~~l~~~~~---~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~~ 1083 (1217)
+++.++..++.++...+ ...++.|++++|.....+......++|++|++.+++.++.+|.. ..+++|++|++++|
T Consensus 133 l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N 212 (350)
T 4ay9_X 133 LDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT 212 (350)
T ss_dssp EEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS
T ss_pred hhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC
Confidence 88877777777775433 34677788888776555444556789999999999999999876 46899999999998
Q ss_pred CCCccccccccccCCcccceeeccCCCccccccccccCCCCCCcceEeecC
Q 039990 1084 NIYKPLVKWGFDKFSSLRKHCINRCSDAVSFPEVEKGVILPTSLTLIRISD 1134 (1217)
Q Consensus 1084 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~ 1134 (1217)
... .++.. .+..|+.|.+.++..++.+|. +..+++|+.+++.+
T Consensus 213 ~l~-~lp~~---~~~~L~~L~~l~~~~l~~lP~----l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 213 RIH-SLPSY---GLENLKKLRARSTYNLKKLPT----LEKLVALMEASLTY 255 (350)
T ss_dssp CCC-CCCSS---SCTTCCEEECTTCTTCCCCCC----TTTCCSCCEEECSC
T ss_pred CcC-ccChh---hhccchHhhhccCCCcCcCCC----chhCcChhhCcCCC
Confidence 654 44443 456777777788888888885 45679999999875
No 82
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.52 E-value=2.8e-13 Score=146.87 Aligned_cols=174 Identities=25% Similarity=0.320 Sum_probs=90.7
Q ss_pred CcccEEEEcCCCCCcccc-ccCCCCCCcceEEecCCCCCcccCCCCC--CCCcceEEEccCcCcccCC-CCCCCCCcceE
Q 039990 980 ACLRSIRLSYCKNLKSLP-KGLNNLSHLHRRSIQGCHNLVSLPEDAL--PSNVVDVSIEDCDKLKAPL-PTGKLSSLQLL 1055 (1217)
Q Consensus 980 ~~L~~L~L~~c~~l~~l~-~~l~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~~~~l~~~~-~~~~l~~L~~L 1055 (1217)
++|++|++++|. +..++ ..+..+++|++|++++| .++.++...+ .++|++|++++|.....+. .+..+++|++|
T Consensus 37 ~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 114 (270)
T 2o6q_A 37 ADTKKLDLQSNK-LSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAEL 114 (270)
T ss_dssp TTCSEEECCSSC-CSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEE
T ss_pred CCCCEEECcCCC-CCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEE
Confidence 344444444432 22222 23444555555555443 2333333221 1333444443333222211 22567778888
Q ss_pred eeccCCCccccCCC--CCCCCCCeEEecCCCCCccccccccccCCcccceeeccCCCccccccccccCCCCCCcceEeec
Q 039990 1056 TLIECPGIVFFPEE--GLSTNLTDLEISGDNIYKPLVKWGFDKFSSLRKHCINRCSDAVSFPEVEKGVILPTSLTLIRIS 1133 (1217)
Q Consensus 1056 ~l~~c~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~ 1133 (1217)
++++|. +..++.. ..+++|++|++++|.... ++...+..+++|++|++++|. +..++. ..+..+++|++|+++
T Consensus 115 ~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~-l~~~~~--~~~~~l~~L~~L~L~ 189 (270)
T 2o6q_A 115 RLDRNQ-LKSLPPRVFDSLTKLTYLSLGYNELQS-LPKGVFDKLTSLKELRLYNNQ-LKRVPE--GAFDKLTELKTLKLD 189 (270)
T ss_dssp ECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSC-CSCCCT--TTTTTCTTCCEEECC
T ss_pred ECCCCc-cCeeCHHHhCcCcCCCEEECCCCcCCc-cCHhHccCCcccceeEecCCc-CcEeCh--hHhccCCCcCEEECC
Confidence 887754 3333332 346677777777765443 333345667777777777653 334443 234556677777777
Q ss_pred CCCCCcccCccccCCccccccccccccc
Q 039990 1134 DFPKLERLSSKGFHYLLSLEQLKVSSCP 1161 (1217)
Q Consensus 1134 ~c~~l~~l~~~~~~~l~~L~~L~l~~c~ 1161 (1217)
+ +.+..+|...+..+++|+.|++++|+
T Consensus 190 ~-N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 190 N-NQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp S-SCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred C-CcCCcCCHHHhccccCCCEEEecCCC
Confidence 6 46666665556666777777777664
No 83
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.52 E-value=6.6e-14 Score=155.32 Aligned_cols=133 Identities=16% Similarity=0.158 Sum_probs=81.2
Q ss_pred CCCCCcceEeeccCCCccc--cCCC---CCCCCCCeEEecCCCCCc--cccccccccCCcccceeeccCCCccccccccc
Q 039990 1047 GKLSSLQLLTLIECPGIVF--FPEE---GLSTNLTDLEISGDNIYK--PLVKWGFDKFSSLRKHCINRCSDAVSFPEVEK 1119 (1217)
Q Consensus 1047 ~~l~~L~~L~l~~c~~l~~--~~~~---~~~~~L~~L~l~~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 1119 (1217)
..+++|++|++++|..... ++.. ..+++|++|++++|.... ..+...+..+++|++|++++|......|....
T Consensus 166 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~ 245 (310)
T 4glp_A 166 RAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAP 245 (310)
T ss_dssp CCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCS
T ss_pred ccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHH
Confidence 4566666666666553321 1111 345667777777765542 11111245677888888887664444454222
Q ss_pred cCCCCCCcceEeecCCCCCcccCccccCCcccccccccccccCcccCCCCCCCCccceEeccCCc
Q 039990 1120 GVILPTSLTLIRISDFPKLERLSSKGFHYLLSLEQLKVSSCPNFTSFPEAGFPSSLLFLDIQGCP 1184 (1217)
Q Consensus 1120 ~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~sL~~L~l~~c~ 1184 (1217)
.+..+++|++|++++ |.++.+| ..+. ++|++|++++| .++.+|....+++|+.|++++++
T Consensus 246 ~~~~~~~L~~L~Ls~-N~l~~lp-~~~~--~~L~~L~Ls~N-~l~~~~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 246 RCMWSSALNSLNLSF-AGLEQVP-KGLP--AKLRVLDLSSN-RLNRAPQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp SCCCCTTCCCEECCS-SCCCSCC-SCCC--SCCSCEECCSC-CCCSCCCTTSCCCCSCEECSSTT
T ss_pred hccCcCcCCEEECCC-CCCCchh-hhhc--CCCCEEECCCC-cCCCCchhhhCCCccEEECcCCC
Confidence 333346888888887 6777777 3443 68888888888 67776655566788888887775
No 84
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.51 E-value=1.7e-14 Score=160.07 Aligned_cols=196 Identities=18% Similarity=0.208 Sum_probs=123.9
Q ss_pred cccCcceEeeccCCCcccccccc--CCCCcccEEEEcCCCCCccccccCCCC-----CCcceEEecCCCCCcccCCCC--
Q 039990 954 LSVAVEELTIDSCSNIESIAERF--HDDACLRSIRLSYCKNLKSLPKGLNNL-----SHLHRRSIQGCHNLVSLPEDA-- 1024 (1217)
Q Consensus 954 ~l~~L~~L~l~~~~~l~~l~~~~--~~l~~L~~L~L~~c~~l~~l~~~l~~l-----~~L~~L~l~~c~~l~~l~~~~-- 1024 (1217)
++++|++|++++|.....+|..+ ..+++|++|++++|. +..+|..+..+ ++|++|++++|. ++.++...
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~ 170 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQVR 170 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHhc
Confidence 35555555555554444444443 445556666665543 33334433333 556666666543 34443211
Q ss_pred CCCCcceEEEccCcCccc-----CCCCCCCCCcceEeeccCCCccc---cCCC--CCCCCCCeEEecCCCCCcccccccc
Q 039990 1025 LPSNVVDVSIEDCDKLKA-----PLPTGKLSSLQLLTLIECPGIVF---FPEE--GLSTNLTDLEISGDNIYKPLVKWGF 1094 (1217)
Q Consensus 1025 ~~~~L~~L~l~~~~~l~~-----~~~~~~l~~L~~L~l~~c~~l~~---~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~ 1094 (1217)
..++|++|++++|..... ...+..+++|++|++++|. +.. ++.. ..+++|++|++++|......+...+
T Consensus 171 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 249 (312)
T 1wwl_A 171 VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSC 249 (312)
T ss_dssp CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCC
T ss_pred cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhh
Confidence 124566666666553221 1222678889999998874 332 2211 2467899999999988765543356
Q ss_pred ccCCcccceeeccCCCccccccccccCCCCCCcceEeecCCCCCcccCccccCCccccccccccccc
Q 039990 1095 DKFSSLRKHCINRCSDAVSFPEVEKGVILPTSLTLIRISDFPKLERLSSKGFHYLLSLEQLKVSSCP 1161 (1217)
Q Consensus 1095 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~L~~L~l~~c~ 1161 (1217)
..+++|++|++++|. ++.+|. . ..++|+.|++++ |+++.+| . +..+++|++|++++|+
T Consensus 250 ~~l~~L~~L~Ls~N~-l~~ip~---~--~~~~L~~L~Ls~-N~l~~~p-~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 250 DWPSQLNSLNLSFTG-LKQVPK---G--LPAKLSVLDLSY-NRLDRNP-S-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp CCCTTCCEEECTTSC-CSSCCS---S--CCSEEEEEECCS-SCCCSCC-C-TTTSCEEEEEECTTCT
T ss_pred hhcCCCCEEECCCCc-cChhhh---h--ccCCceEEECCC-CCCCCCh-h-HhhCCCCCEEeccCCC
Confidence 778999999999975 557776 2 238999999999 7999998 3 8899999999999994
No 85
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.50 E-value=5.9e-13 Score=144.26 Aligned_cols=195 Identities=18% Similarity=0.267 Sum_probs=118.1
Q ss_pred ccceEeccCCCCcccccCCCCCCCccEEeecCCCCCcccccccccccCcceEeeccCCCccccccc-cCCCCcccEEEEc
Q 039990 910 LESLSVQSCPSLTRLWSSGRLPVTLKCIQIEDCSNFKVLTSECQLSVAVEELTIDSCSNIESIAER-FHDDACLRSIRLS 988 (1217)
Q Consensus 910 L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~-~~~l~~L~~L~L~ 988 (1217)
.+.+++++. .++.++. ..+.+++.|++++|......+..+.++++|++|++++|. +..++.. +..+++|++|+++
T Consensus 18 ~~~l~~~~~-~l~~ip~--~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 18 KNSVDCSSK-KLTAIPS--NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTEEECTTS-CCSSCCS--CCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCEEECC
T ss_pred CCEEEccCC-CCCccCC--CCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCEEECC
Confidence 444554432 3444422 233456666666654433333445556666666665543 3333332 2345556666665
Q ss_pred CCCCCcccc-ccCCCCCCcceEEecCCCCCcccCCCCCCCCcceEEEccCcCcccCCCCCCCCCcceEeeccCCCccccC
Q 039990 989 YCKNLKSLP-KGLNNLSHLHRRSIQGCHNLVSLPEDALPSNVVDVSIEDCDKLKAPLPTGKLSSLQLLTLIECPGIVFFP 1067 (1217)
Q Consensus 989 ~c~~l~~l~-~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~ 1067 (1217)
+|. +..+| ..+..+++|++|++++|. ++.++. ..+..+++|++|++++|. +..++
T Consensus 94 ~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~---------------------~~~~~l~~L~~L~Ls~n~-l~~~~ 149 (270)
T 2o6q_A 94 DNK-LQALPIGVFDQLVNLAELRLDRNQ-LKSLPP---------------------RVFDSLTKLTYLSLGYNE-LQSLP 149 (270)
T ss_dssp SSC-CCCCCTTTTTTCSSCCEEECCSSC-CCCCCT---------------------TTTTTCTTCCEEECCSSC-CCCCC
T ss_pred CCc-CCcCCHhHcccccCCCEEECCCCc-cCeeCH---------------------HHhCcCcCCCEEECCCCc-CCccC
Confidence 543 33332 234555555555555532 333321 124688999999999974 55565
Q ss_pred CC--CCCCCCCeEEecCCCCCccccccccccCCcccceeeccCCCccccccccccCCCCCCcceEeecCCC
Q 039990 1068 EE--GLSTNLTDLEISGDNIYKPLVKWGFDKFSSLRKHCINRCSDAVSFPEVEKGVILPTSLTLIRISDFP 1136 (1217)
Q Consensus 1068 ~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~ 1136 (1217)
.. ..+++|++|++++|...... ...|..+++|++|++++| .+..++. ..+..+++|+.|++++++
T Consensus 150 ~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N-~l~~~~~--~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 150 KGVFDKLTSLKELRLYNNQLKRVP-EGAFDKLTELKTLKLDNN-QLKRVPE--GAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSS-CCSCCCT--TTTTTCTTCCEEECCSSC
T ss_pred HhHccCCcccceeEecCCcCcEeC-hhHhccCCCcCEEECCCC-cCCcCCH--HHhccccCCCEEEecCCC
Confidence 54 55899999999999766543 346889999999999997 4566665 456678999999999843
No 86
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.50 E-value=4.3e-13 Score=146.16 Aligned_cols=197 Identities=18% Similarity=0.191 Sum_probs=134.6
Q ss_pred cCcceEeeccCCCccccccccCCCCcccEEEEcCCCCCccc-cccCCCCCCcceEEecCCCCCcccCCCCCCCCcceEEE
Q 039990 956 VAVEELTIDSCSNIESIAERFHDDACLRSIRLSYCKNLKSL-PKGLNNLSHLHRRSIQGCHNLVSLPEDALPSNVVDVSI 1034 (1217)
Q Consensus 956 ~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~L~~c~~l~~l-~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l 1034 (1217)
++|++|++++|......+..+..+++|++|++++|. +..+ +..+..+++|++|++++|. ++.++.
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~------------ 93 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNP-IQSLAL------------ 93 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTCC-CCEECT------------
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCc-CCccCHHHccCCcCCCEEECCCCc-cCccCh------------
Confidence 467777777754332223355556777777777754 3333 3356667777777777653 333332
Q ss_pred ccCcCcccCCCCCCCCCcceEeeccCCCccccCC--CCCCCCCCeEEecCCCCCcc-ccccccccCCcccceeeccCCCc
Q 039990 1035 EDCDKLKAPLPTGKLSSLQLLTLIECPGIVFFPE--EGLSTNLTDLEISGDNIYKP-LVKWGFDKFSSLRKHCINRCSDA 1111 (1217)
Q Consensus 1035 ~~~~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~--~~~~~~L~~L~l~~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~l 1111 (1217)
..+..+++|++|++++|.. ..++. ...+++|++|++++|..... ++. .+..+++|++|++++|..
T Consensus 94 ---------~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~-~~~~l~~L~~L~Ls~N~l- 161 (276)
T 2z62_A 94 ---------GAFSGLSSLQKLVAVETNL-ASLENFPIGHLKTLKELNVAHNLIQSFKLPE-YFSNLTNLEHLDLSSNKI- 161 (276)
T ss_dssp ---------TTTTTCTTCCEEECTTSCC-CCSTTCCCTTCTTCCEEECCSSCCCCCCCCG-GGGGCTTCCEEECCSSCC-
T ss_pred ---------hhhcCCccccEEECCCCCc-cccCchhcccCCCCCEEECcCCccceecCch-hhccCCCCCEEECCCCCC-
Confidence 2346788999999988653 33333 25688999999999987753 344 688999999999999754
Q ss_pred cccccccccCCCCCCcc----eEeecCCCCCcccCccccCCcccccccccccccCcccCCCC--CCCCccceEeccCC
Q 039990 1112 VSFPEVEKGVILPTSLT----LIRISDFPKLERLSSKGFHYLLSLEQLKVSSCPNFTSFPEA--GFPSSLLFLDIQGC 1183 (1217)
Q Consensus 1112 ~~~~~~~~~~~~~~~L~----~L~l~~c~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~lp~~--~~~~sL~~L~l~~c 1183 (1217)
..++. ..+..+++|+ +|++++ +.+..++...+ ...+|+.|++++| .++.+|.. ..+++|+.|+++++
T Consensus 162 ~~~~~--~~~~~l~~L~~l~l~L~ls~-n~l~~~~~~~~-~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 162 QSIYC--TDLRVLHQMPLLNLSLDLSL-NPMNFIQPGAF-KEIRLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp CEECG--GGGHHHHTCTTCCEEEECCS-SCCCEECTTSS-CSCCEEEEECCSS-CCSCCCTTTTTTCCSCCEEECCSS
T ss_pred CcCCH--HHhhhhhhccccceeeecCC-CcccccCcccc-CCCcccEEECCCC-ceeecCHhHhcccccccEEEccCC
Confidence 44432 1333345555 899998 78899884444 4458999999999 68888865 45789999999954
No 87
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.46 E-value=2.4e-13 Score=150.76 Aligned_cols=198 Identities=15% Similarity=0.153 Sum_probs=129.6
Q ss_pred CccEEeecCCCCCccccccc--ccccCcceEeeccCCCccccc----cccCCCCcccEEEEcCCCCCccccccCCCCCCc
Q 039990 933 TLKCIQIEDCSNFKVLTSEC--QLSVAVEELTIDSCSNIESIA----ERFHDDACLRSIRLSYCKNLKSLPKGLNNLSHL 1006 (1217)
Q Consensus 933 ~L~~L~l~~~~~l~~~~~~~--~~l~~L~~L~l~~~~~l~~l~----~~~~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L 1006 (1217)
+|++|++++|......+..+ ..+++|++|++++|......+ ..+..+++|++|++++|......|..+..+++|
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 171 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL 171 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence 46777777766665666555 667777777777765443222 222346677777777765444445566677777
Q ss_pred ceEEecCCCCCcc--cCCCCCCCCcceEEEccCcCcccCCCCCCCCCcceEeeccCCCccccCCC-----CCCCCCCeEE
Q 039990 1007 HRRSIQGCHNLVS--LPEDALPSNVVDVSIEDCDKLKAPLPTGKLSSLQLLTLIECPGIVFFPEE-----GLSTNLTDLE 1079 (1217)
Q Consensus 1007 ~~L~l~~c~~l~~--l~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~-----~~~~~L~~L~ 1079 (1217)
++|++++|...+. ++.. .....+++|++|++++|. ++.++.. ..+++|++|+
T Consensus 172 ~~L~Ls~N~l~~~~~~~~~--------------------~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~ 230 (310)
T 4glp_A 172 TSLDLSDNPGLGERGLMAA--------------------LCPHKFPAIQNLALRNTG-METPTGVCAALAAAGVQPHSLD 230 (310)
T ss_dssp CEEECCSCTTCHHHHHHTT--------------------SCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHHTCCCSSEE
T ss_pred CEEECCCCCCccchhhhHH--------------------HhhhcCCCCCEEECCCCC-CCchHHHHHHHHhcCCCCCEEE
Confidence 7777777643221 2110 112466778888887764 3333321 2357888888
Q ss_pred ecCCCCCccccccccccC---CcccceeeccCCCccccccccccCCCCCCcceEeecCCCCCcccCccccCCcccccccc
Q 039990 1080 ISGDNIYKPLVKWGFDKF---SSLRKHCINRCSDAVSFPEVEKGVILPTSLTLIRISDFPKLERLSSKGFHYLLSLEQLK 1156 (1217)
Q Consensus 1080 l~~~~~~~~~~~~~~~~l---~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~L~~L~ 1156 (1217)
+++|......+. .+..+ ++|++|++++|. ++.+|. ..+++|++|++++ |++..+| .+..+++|+.|+
T Consensus 231 Ls~N~l~~~~p~-~~~~~~~~~~L~~L~Ls~N~-l~~lp~-----~~~~~L~~L~Ls~-N~l~~~~--~~~~l~~L~~L~ 300 (310)
T 4glp_A 231 LSHNSLRATVNP-SAPRCMWSSALNSLNLSFAG-LEQVPK-----GLPAKLRVLDLSS-NRLNRAP--QPDELPEVDNLT 300 (310)
T ss_dssp CTTSCCCCCCCS-CCSSCCCCTTCCCEECCSSC-CCSCCS-----CCCSCCSCEECCS-CCCCSCC--CTTSCCCCSCEE
T ss_pred CCCCCCCccchh-hHHhccCcCcCCEEECCCCC-CCchhh-----hhcCCCCEEECCC-CcCCCCc--hhhhCCCccEEE
Confidence 888877765443 23344 799999999864 557776 2348999999998 7888887 378889999999
Q ss_pred ccccc
Q 039990 1157 VSSCP 1161 (1217)
Q Consensus 1157 l~~c~ 1161 (1217)
+++|+
T Consensus 301 L~~N~ 305 (310)
T 4glp_A 301 LDGNP 305 (310)
T ss_dssp CSSTT
T ss_pred CcCCC
Confidence 99994
No 88
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.46 E-value=3e-13 Score=149.38 Aligned_cols=192 Identities=15% Similarity=0.155 Sum_probs=104.5
Q ss_pred CccEEeecCCCCCcccccccccccCcceEeeccCCCccccccccCCCCcccEEEEcCCCCCccccccCCCCCCcceEEec
Q 039990 933 TLKCIQIEDCSNFKVLTSECQLSVAVEELTIDSCSNIESIAERFHDDACLRSIRLSYCKNLKSLPKGLNNLSHLHRRSIQ 1012 (1217)
Q Consensus 933 ~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~l~ 1012 (1217)
+|+.|++++|.. ..++ .+..+++|++|++++| .+..++. +..+++|++|++++|. +..++ .+..+++|++|+++
T Consensus 42 ~L~~L~l~~~~i-~~l~-~~~~l~~L~~L~L~~n-~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 42 GITTLSAFGTGV-TTIE-GVQYLNNLIGLELKDN-QITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQSIKTLDLT 115 (308)
T ss_dssp TCCEEECTTSCC-CCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEEECT
T ss_pred CcCEEEeeCCCc-cCch-hhhccCCCCEEEccCC-cCCCChh-HccCCCCCEEEccCCc-CCCch-hhcCCCCCCEEECC
Confidence 566667666533 3333 3556666666666665 3344444 5556666666666644 44443 45666666666666
Q ss_pred CCCCCcccCCCCCCCCcceEEEccCcCcccCCCCCCCCCcceEeeccCCCccccCCCCCCCCCCeEEecCCCCCcccccc
Q 039990 1013 GCHNLVSLPEDALPSNVVDVSIEDCDKLKAPLPTGKLSSLQLLTLIECPGIVFFPEEGLSTNLTDLEISGDNIYKPLVKW 1092 (1217)
Q Consensus 1013 ~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 1092 (1217)
+|. ++.++. +..+++|++|++++|. +..++....+++|++|++++|......
T Consensus 116 ~n~-l~~~~~-----------------------l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~~--- 167 (308)
T 1h6u_A 116 STQ-ITDVTP-----------------------LAGLSNLQVLYLDLNQ-ITNISPLAGLTNLQYLSIGNAQVSDLT--- 167 (308)
T ss_dssp TSC-CCCCGG-----------------------GTTCTTCCEEECCSSC-CCCCGGGGGCTTCCEEECCSSCCCCCG---
T ss_pred CCC-CCCchh-----------------------hcCCCCCCEEECCCCc-cCcCccccCCCCccEEEccCCcCCCCh---
Confidence 653 444332 3445555555555542 222332334555666666665444322
Q ss_pred ccccCCcccceeeccCCCccccccccccCCCCCCcceEeecCCCCCcccCccccCCcccccccccccccCcccCC
Q 039990 1093 GFDKFSSLRKHCINRCSDAVSFPEVEKGVILPTSLTLIRISDFPKLERLSSKGFHYLLSLEQLKVSSCPNFTSFP 1167 (1217)
Q Consensus 1093 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~lp 1167 (1217)
.+..+++|++|++++|. +..++. +..+++|++|++++ +.+..++ .+..+++|+.|++++| .++..|
T Consensus 168 ~l~~l~~L~~L~l~~n~-l~~~~~----l~~l~~L~~L~L~~-N~l~~~~--~l~~l~~L~~L~l~~N-~i~~~~ 233 (308)
T 1h6u_A 168 PLANLSKLTTLKADDNK-ISDISP----LASLPNLIEVHLKN-NQISDVS--PLANTSNLFIVTLTNQ-TITNQP 233 (308)
T ss_dssp GGTTCTTCCEEECCSSC-CCCCGG----GGGCTTCCEEECTT-SCCCBCG--GGTTCTTCCEEEEEEE-EEECCC
T ss_pred hhcCCCCCCEEECCCCc-cCcChh----hcCCCCCCEEEccC-CccCccc--cccCCCCCCEEEccCC-eeecCC
Confidence 14566666666666643 333332 34456666666666 4566655 3566666777777766 344444
No 89
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.45 E-value=1.6e-12 Score=141.88 Aligned_cols=195 Identities=17% Similarity=0.178 Sum_probs=133.9
Q ss_pred cccccceEeccCCCCcccccCCCCCCCccEEeecCCCCCcccccccccccCcceEeeccCCCccccccccCCCCcccEEE
Q 039990 907 YLDLESLSVQSCPSLTRLWSSGRLPVTLKCIQIEDCSNFKVLTSECQLSVAVEELTIDSCSNIESIAERFHDDACLRSIR 986 (1217)
Q Consensus 907 ~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~ 986 (1217)
+++++.+.+++ ..++.++. ..+++++.|++++|......+..+..+++|+.|++++|. +..++.. ..+++|++|+
T Consensus 9 l~~l~~l~~~~-~~l~~ip~--~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-~~l~~L~~L~ 83 (290)
T 1p9a_G 9 VASHLEVNCDK-RNLTALPP--DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVD-GTLPVLGTLD 83 (290)
T ss_dssp STTCCEEECTT-SCCSSCCS--CCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEECC-SCCTTCCEEE
T ss_pred cCCccEEECCC-CCCCcCCC--CCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-cCcccCC-CCCCcCCEEE
Confidence 34466666665 34555533 234678888888877655556677778888888888754 4455443 4577888888
Q ss_pred EcCCCCCccccccCCCCCCcceEEecCCCCCcccCCCCCCCCcceEEEccCcCcccCCCCCCCCCcceEeeccCCCcccc
Q 039990 987 LSYCKNLKSLPKGLNNLSHLHRRSIQGCHNLVSLPEDALPSNVVDVSIEDCDKLKAPLPTGKLSSLQLLTLIECPGIVFF 1066 (1217)
Q Consensus 987 L~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~c~~l~~~ 1066 (1217)
+++| .+..+|..+..+++|+.|++++| .++.++.. .+..+++|++|++++| .+..+
T Consensus 84 Ls~N-~l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~---------------------~~~~l~~L~~L~L~~N-~l~~~ 139 (290)
T 1p9a_G 84 LSHN-QLQSLPLLGQTLPALTVLDVSFN-RLTSLPLG---------------------ALRGLGELQELYLKGN-ELKTL 139 (290)
T ss_dssp CCSS-CCSSCCCCTTTCTTCCEEECCSS-CCCCCCSS---------------------TTTTCTTCCEEECTTS-CCCCC
T ss_pred CCCC-cCCcCchhhccCCCCCEEECCCC-cCcccCHH---------------------HHcCCCCCCEEECCCC-CCCcc
Confidence 8874 46677777777777888887775 45555432 2356778888888875 34455
Q ss_pred CCC--CCCCCCCeEEecCCCCCccccccccccCCcccceeeccCCCccccccccccCCCCCCcceEeecCC
Q 039990 1067 PEE--GLSTNLTDLEISGDNIYKPLVKWGFDKFSSLRKHCINRCSDAVSFPEVEKGVILPTSLTLIRISDF 1135 (1217)
Q Consensus 1067 ~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c 1135 (1217)
+.. ..+++|+.|++++|... .++...|..+++|+.|++++| .+..+|. .+...++|+.|+++++
T Consensus 140 ~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~L~~N-~l~~ip~---~~~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 140 PPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQEN-SLYTIPK---GFFGSHLLPFAFLHGN 205 (290)
T ss_dssp CTTTTTTCTTCCEEECTTSCCS-CCCTTTTTTCTTCCEEECCSS-CCCCCCT---TTTTTCCCSEEECCSC
T ss_pred ChhhcccccCCCEEECCCCcCC-ccCHHHhcCcCCCCEEECCCC-cCCccCh---hhcccccCCeEEeCCC
Confidence 544 34678888888888665 344446788999999999996 4667776 3445679999999984
No 90
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.45 E-value=3.3e-13 Score=149.07 Aligned_cols=191 Identities=16% Similarity=0.179 Sum_probs=147.1
Q ss_pred ccccCcceEeeccCCCccccccccCCCCcccEEEEcCCCCCccccccCCCCCCcceEEecCCCCCcccCCCCCCCCcceE
Q 039990 953 QLSVAVEELTIDSCSNIESIAERFHDDACLRSIRLSYCKNLKSLPKGLNNLSHLHRRSIQGCHNLVSLPEDALPSNVVDV 1032 (1217)
Q Consensus 953 ~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L 1032 (1217)
..+++|++|++++| .+..++ .+..+++|++|++++| .+..++. +..+++|++|++++|. ++.++
T Consensus 38 ~~l~~L~~L~l~~~-~i~~l~-~~~~l~~L~~L~L~~n-~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~----------- 101 (308)
T 1h6u_A 38 ADLDGITTLSAFGT-GVTTIE-GVQYLNNLIGLELKDN-QITDLAP-LKNLTKITELELSGNP-LKNVS----------- 101 (308)
T ss_dssp HHHHTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSCC-CSCCG-----------
T ss_pred HHcCCcCEEEeeCC-CccCch-hhhccCCCCEEEccCC-cCCCChh-HccCCCCCEEEccCCc-CCCch-----------
Confidence 45778888888886 445555 3556788888888886 4555655 7778888888888764 44332
Q ss_pred EEccCcCcccCCCCCCCCCcceEeeccCCCccccCCCCCCCCCCeEEecCCCCCccccccccccCCcccceeeccCCCcc
Q 039990 1033 SIEDCDKLKAPLPTGKLSSLQLLTLIECPGIVFFPEEGLSTNLTDLEISGDNIYKPLVKWGFDKFSSLRKHCINRCSDAV 1112 (1217)
Q Consensus 1033 ~l~~~~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 1112 (1217)
.+..+++|++|++++|. +..++....+++|++|++++|......+ +..+++|++|++++|. +.
T Consensus 102 ------------~~~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~l~~n~-l~ 164 (308)
T 1h6u_A 102 ------------AIAGLQSIKTLDLTSTQ-ITDVTPLAGLSNLQVLYLDLNQITNISP---LAGLTNLQYLSIGNAQ-VS 164 (308)
T ss_dssp ------------GGTTCTTCCEEECTTSC-CCCCGGGTTCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECCSSC-CC
T ss_pred ------------hhcCCCCCCEEECCCCC-CCCchhhcCCCCCCEEECCCCccCcCcc---ccCCCCccEEEccCCc-CC
Confidence 23567889999998865 4445555678999999999997765432 7899999999999974 45
Q ss_pred ccccccccCCCCCCcceEeecCCCCCcccCccccCCcccccccccccccCcccCCCCCCCCccceEeccCCc
Q 039990 1113 SFPEVEKGVILPTSLTLIRISDFPKLERLSSKGFHYLLSLEQLKVSSCPNFTSFPEAGFPSSLLFLDIQGCP 1184 (1217)
Q Consensus 1113 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~sL~~L~l~~c~ 1184 (1217)
.++. +..+++|+.|++++ +.+..++ .+..+++|++|++++| .++.++....+++|+.|++++|+
T Consensus 165 ~~~~----l~~l~~L~~L~l~~-n~l~~~~--~l~~l~~L~~L~L~~N-~l~~~~~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 165 DLTP----LANLSKLTTLKADD-NKISDIS--PLASLPNLIEVHLKNN-QISDVSPLANTSNLFIVTLTNQT 228 (308)
T ss_dssp CCGG----GTTCTTCCEEECCS-SCCCCCG--GGGGCTTCCEEECTTS-CCCBCGGGTTCTTCCEEEEEEEE
T ss_pred CChh----hcCCCCCCEEECCC-CccCcCh--hhcCCCCCCEEEccCC-ccCccccccCCCCCCEEEccCCe
Confidence 5543 56789999999999 6888887 3889999999999999 77777755678999999999886
No 91
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.44 E-value=2.4e-14 Score=161.54 Aligned_cols=200 Identities=16% Similarity=0.211 Sum_probs=91.2
Q ss_pred cccCcceEeeccCCCccc-cccccCCCCcccEEEEcCCCCCccccccCCCCCCcceEEecCCCCCcc--cCC-CCCCCCc
Q 039990 954 LSVAVEELTIDSCSNIES-IAERFHDDACLRSIRLSYCKNLKSLPKGLNNLSHLHRRSIQGCHNLVS--LPE-DALPSNV 1029 (1217)
Q Consensus 954 ~l~~L~~L~l~~~~~l~~-l~~~~~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~--l~~-~~~~~~L 1029 (1217)
.+++|++|++++|..... ++..+..+++|++|++++|......+..+..+++|++|++++|..++. ++. ....++|
T Consensus 91 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L 170 (336)
T 2ast_B 91 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL 170 (336)
T ss_dssp CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred cCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCC
Confidence 344444444444432111 333333344444444444432223333444444444444444433331 111 0011234
Q ss_pred ceEEEccCcCccc---CCCCCCCC-CcceEeeccCC-Ccc--ccCCC-CCCCCCCeEEecCCCCCccccccccccCCccc
Q 039990 1030 VDVSIEDCDKLKA---PLPTGKLS-SLQLLTLIECP-GIV--FFPEE-GLSTNLTDLEISGDNIYKPLVKWGFDKFSSLR 1101 (1217)
Q Consensus 1030 ~~L~l~~~~~l~~---~~~~~~l~-~L~~L~l~~c~-~l~--~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 1101 (1217)
++|++++|..+.. +..+..++ +|++|++++|. .+. .++.. ..+++|++|++++|...+......+..+++|+
T Consensus 171 ~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~ 250 (336)
T 2ast_B 171 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQ 250 (336)
T ss_dssp CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred CEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCC
Confidence 4444444422221 01113455 66666666653 221 12211 23566777777776633222122456677777
Q ss_pred ceeeccCCCccccccccccCCCCCCcceEeecCCCCCcccCccccCCc-ccccccccccc
Q 039990 1102 KHCINRCSDAVSFPEVEKGVILPTSLTLIRISDFPKLERLSSKGFHYL-LSLEQLKVSSC 1160 (1217)
Q Consensus 1102 ~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l-~~L~~L~l~~c 1160 (1217)
+|++++|..+.. .....+..+++|+.|++++| ++...+..+ .+|+.|++++|
T Consensus 251 ~L~l~~~~~~~~--~~~~~l~~~~~L~~L~l~~~-----i~~~~~~~l~~~l~~L~l~~n 303 (336)
T 2ast_B 251 HLSLSRCYDIIP--ETLLELGEIPTLKTLQVFGI-----VPDGTLQLLKEALPHLQINCS 303 (336)
T ss_dssp EEECTTCTTCCG--GGGGGGGGCTTCCEEECTTS-----SCTTCHHHHHHHSTTSEESCC
T ss_pred EeeCCCCCCCCH--HHHHHHhcCCCCCEEeccCc-----cCHHHHHHHHhhCcceEEecc
Confidence 777777753221 11123445677777777775 443344444 33667777666
No 92
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.42 E-value=1.3e-11 Score=140.01 Aligned_cols=281 Identities=13% Similarity=0.118 Sum_probs=169.4
Q ss_pred CCCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCcc------cHH
Q 039990 77 SEPAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDF------DIL 150 (1217)
Q Consensus 77 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~~------~~~ 150 (1217)
....||||+++++++.+++... +++.|+|++|+|||||+++++++ . ..+|+++.... +..
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~~--------~~v~i~G~~G~GKT~Ll~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~ 75 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLENY--------PLTLLLGIRRVGKSSLLRAFLNE-R-----PGILIDCRELYAERGHITRE 75 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHHC--------SEEEEECCTTSSHHHHHHHHHHH-S-----SEEEEEHHHHHHTTTCBCHH
T ss_pred ChHhcCChHHHHHHHHHHHhcC--------CeEEEECCCcCCHHHHHHHHHHH-c-----CcEEEEeecccccccCCCHH
Confidence 3457999999999999988642 48999999999999999999876 3 26777765432 455
Q ss_pred HHHHHHHHHhhc---------------C-CC--CCCChhHHHHHHHHHHHh--c----CcCH------------HHHHHh
Q 039990 151 RISKAILESITR---------------S-SC--GLTDLNSVQLKLKEAVFK--K----NKSY------------ELWQAL 194 (1217)
Q Consensus 151 ~~~~~i~~~l~~---------------~-~~--~~~~~~~~~~~l~~~l~~--~----~~~~------------~~~~~l 194 (1217)
.+...+...+.. . .. ...+..++...+...... + +|+. +.+..+
T Consensus 76 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L 155 (350)
T 2qen_A 76 ELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALF 155 (350)
T ss_dssp HHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHH
Confidence 666666655432 0 00 113444555555544432 3 2221 223333
Q ss_pred hcccCCCCCCcEEEEEcCchHHHHhh-----------CC-CceEeccCCChHHHHHHHHHHHhCCCCCCCCCchhhHHHH
Q 039990 195 KSPFMAGAPGSRIIVTTRSMDVALKM-----------GS-GKNYELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQR 262 (1217)
Q Consensus 195 ~~~~~~~~~gs~ilvTtR~~~v~~~~-----------~~-~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~ 262 (1217)
...+.. ..+.++|+|++...+.... +. ...+++.+|+.+|+.+++.......+ .. ...+.+.+
T Consensus 156 ~~~~~~-~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~-~~---~~~~~~~~ 230 (350)
T 2qen_A 156 AYAYDS-LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVN-LD---VPENEIEE 230 (350)
T ss_dssp HHHHHH-CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTT-CC---CCHHHHHH
T ss_pred HHHHHh-cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcC-CC---CCHHHHHH
Confidence 332222 2478899999876542211 11 24789999999999999987542211 11 12457889
Q ss_pred HHHhccCCchhHHHHHHHhhcCCChhHHH-HHHhhccCCCCCCCCchHHHHHhhcCC---ChhHHHHHHHhhcCCCCccc
Q 039990 263 VVAKCKGLPLAARALGGLLRSKQRVDEWR-AILNSKIWDLEDEIEIPSVLKLSYHHL---PSHLKRCFAYCAILPKDYEF 338 (1217)
Q Consensus 263 i~~~~~g~PLai~~~~~~l~~~~~~~~w~-~~~~~~~~~~~~~~~i~~~l~~sy~~L---~~~~k~~f~~~~~fp~~~~i 338 (1217)
|++.++|+|+++..++..+....+...+. ++.+. +...+.-.+..+ ++..+..+..+|. + ..
T Consensus 231 i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~l~~l~~~~~~~~~~l~~la~---g-~~ 296 (350)
T 2qen_A 231 AVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEV----------AKGLIMGELEELRRRSPRYVDILRAIAL---G-YN 296 (350)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHH----------HHHHHHHHHHHHHHHCHHHHHHHHHHHT---T-CC
T ss_pred HHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHHH----------HHHHHHHHHHHHHhCChhHHHHHHHHHh---C-CC
Confidence 99999999999999887653322222221 11111 111122222223 7888999999887 2 23
Q ss_pred ChHHHHHHHHHhCCcccccccccHHHHHHHHHHHHHhccCCcccCCCCCeEEE-chhHHHHHH
Q 039990 339 QEEELVLLWIAEGFIQQSKYSKQLEDWGSEYFHDLLSRSMFQKSSNNESKFVM-HDLVHDLAQ 400 (1217)
Q Consensus 339 ~~~~li~~w~~~g~i~~~~~~~~~~~~~~~~l~~L~~~sl~~~~~~~~~~~~m-h~lv~~~~~ 400 (1217)
+...+....... .- .........+++.|++.+++...+ ..|++ |++++++.+
T Consensus 297 ~~~~l~~~~~~~-~~------~~~~~~~~~~l~~L~~~gli~~~~---~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 297 RWSLIRDYLAVK-GT------KIPEPRLYALLENLKKMNWIVEED---NTYKIADPVVATVLR 349 (350)
T ss_dssp SHHHHHHHHHHT-TC------CCCHHHHHHHHHHHHHTTSEEEET---TEEEESSHHHHHHHT
T ss_pred CHHHHHHHHHHH-hC------CCCHHHHHHHHHHHHhCCCEEecC---CEEEEecHHHHHHHc
Confidence 444544433221 10 011245678899999999998653 35765 678887753
No 93
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.42 E-value=1.8e-14 Score=162.63 Aligned_cols=244 Identities=14% Similarity=0.093 Sum_probs=167.5
Q ss_pred CCccEEeecCCCCCcccccccccc--cCcceEeeccCCCccccccccCCCCcccEEEEcCCCCCcc-ccccCCCCCCcce
Q 039990 932 VTLKCIQIEDCSNFKVLTSECQLS--VAVEELTIDSCSNIESIAERFHDDACLRSIRLSYCKNLKS-LPKGLNNLSHLHR 1008 (1217)
Q Consensus 932 ~~L~~L~l~~~~~l~~~~~~~~~l--~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~L~~c~~l~~-l~~~l~~l~~L~~ 1008 (1217)
..++.++++++... +..+..+ +.++.|+++++.. ...+.....+++|++|++++|..... ++..+..+++|++
T Consensus 47 ~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l-~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 47 SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFM-DQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEE-CSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred hhheeeccccccCC---HHHHHhhhhccceEEEcCCccc-cccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 35778888876443 3444555 7899999999754 44444456689999999999874333 6777889999999
Q ss_pred EEecCCCCCcccCC-CCCCCCcceEEEccCcCccc---CCCCCCCCCcceEeeccCCCccc--cCCC-CCCC-CCCeEEe
Q 039990 1009 RSIQGCHNLVSLPE-DALPSNVVDVSIEDCDKLKA---PLPTGKLSSLQLLTLIECPGIVF--FPEE-GLST-NLTDLEI 1080 (1217)
Q Consensus 1009 L~l~~c~~l~~l~~-~~~~~~L~~L~l~~~~~l~~---~~~~~~l~~L~~L~l~~c~~l~~--~~~~-~~~~-~L~~L~l 1080 (1217)
|++++|..-...+. ....++|++|++++|..+.. +..+..+++|++|++++|..+.. ++.. ..++ +|++|++
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l 202 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL 202 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEe
Confidence 99999863222321 11247999999999965553 11135789999999999866653 2322 3467 9999999
Q ss_pred cCCC--CC-ccccccccccCCcccceeeccCCCccc-cccccccCCCCCCcceEeecCCCCCcccCccccCCcccccccc
Q 039990 1081 SGDN--IY-KPLVKWGFDKFSSLRKHCINRCSDAVS-FPEVEKGVILPTSLTLIRISDFPKLERLSSKGFHYLLSLEQLK 1156 (1217)
Q Consensus 1081 ~~~~--~~-~~~~~~~~~~l~~L~~L~l~~~~~l~~-~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~L~~L~ 1156 (1217)
++|. .. ..++. .+..+++|++|++++|..++. .+. .+..+++|++|++++|..+..-....+.++++|++|+
T Consensus 203 ~~~~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~---~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ 278 (336)
T 2ast_B 203 SGYRKNLQKSDLST-LVRRCPNLVHLDLSDSVMLKNDCFQ---EFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQ 278 (336)
T ss_dssp CSCGGGSCHHHHHH-HHHHCTTCSEEECTTCTTCCGGGGG---GGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEE
T ss_pred CCCcccCCHHHHHH-HHhhCCCCCEEeCCCCCcCCHHHHH---HHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEe
Confidence 9995 33 22333 567899999999999885542 332 4456799999999998744332223577899999999
Q ss_pred cccccCcccCCCCC---CCCccceEeccCCcchHHh
Q 039990 1157 VSSCPNFTSFPEAG---FPSSLLFLDIQGCPLLENK 1189 (1217)
Q Consensus 1157 l~~c~~l~~lp~~~---~~~sL~~L~l~~c~~l~~~ 1189 (1217)
+++| ++..+ ...+|..|++++| .++..
T Consensus 279 l~~~-----i~~~~~~~l~~~l~~L~l~~n-~l~~~ 308 (336)
T 2ast_B 279 VFGI-----VPDGTLQLLKEALPHLQINCS-HFTTI 308 (336)
T ss_dssp CTTS-----SCTTCHHHHHHHSTTSEESCC-CSCCT
T ss_pred ccCc-----cCHHHHHHHHhhCcceEEecc-cCccc
Confidence 9998 44432 1245777777544 34433
No 94
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.36 E-value=5e-12 Score=136.98 Aligned_cols=191 Identities=21% Similarity=0.219 Sum_probs=143.4
Q ss_pred CCCcccEEEEcCCCCCccccccCCCCCCcceEEecCCCCCcccCCCCCCCCcceEEEccCcCcccCCC-CCCCCCcceEe
Q 039990 978 DDACLRSIRLSYCKNLKSLPKGLNNLSHLHRRSIQGCHNLVSLPEDALPSNVVDVSIEDCDKLKAPLP-TGKLSSLQLLT 1056 (1217)
Q Consensus 978 ~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~-~~~l~~L~~L~ 1056 (1217)
.+++|+.|++++|. +..++ ++..+++|++|++++|. ++.++.....++|++|++++|.....+.. +..+++|++|+
T Consensus 39 ~l~~L~~L~l~~~~-i~~~~-~l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 39 ELNSIDQIIANNSD-IKSVQ-GIQYLPNVRYLALGGNK-LHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp HHTTCCEEECTTSC-CCCCT-TGGGCTTCCEEECTTSC-CCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred cccceeeeeeCCCC-ccccc-ccccCCCCcEEECCCCC-CCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence 37899999999965 56664 58889999999999975 66666444457999999999976655333 47899999999
Q ss_pred eccCCCccccCCC--CCCCCCCeEEecCCCCCccccccccccCCcccceeeccCCCccccccccccCCCCCCcceEeecC
Q 039990 1057 LIECPGIVFFPEE--GLSTNLTDLEISGDNIYKPLVKWGFDKFSSLRKHCINRCSDAVSFPEVEKGVILPTSLTLIRISD 1134 (1217)
Q Consensus 1057 l~~c~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~ 1134 (1217)
+++|. +..++.. ..+++|++|++++|.... ++...+..+++|++|++++|. +..++. ..+..+++|++|++++
T Consensus 116 L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~-l~~~~~--~~~~~l~~L~~L~L~~ 190 (272)
T 3rfs_A 116 LVENQ-LQSLPDGVFDKLTNLTYLNLAHNQLQS-LPKGVFDKLTNLTELDLSYNQ-LQSLPE--GVFDKLTQLKDLRLYQ 190 (272)
T ss_dssp CTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSC-CCCCCT--TTTTTCTTCCEEECCS
T ss_pred CCCCc-CCccCHHHhccCCCCCEEECCCCccCc-cCHHHhccCccCCEEECCCCC-cCccCH--HHhcCCccCCEEECCC
Confidence 99875 4444443 557899999999986654 433357889999999999975 445554 3456789999999998
Q ss_pred CCCCcccCccccCCcccccccccccccCcccCCCCCCCCccceEeccCC
Q 039990 1135 FPKLERLSSKGFHYLLSLEQLKVSSCPNFTSFPEAGFPSSLLFLDIQGC 1183 (1217)
Q Consensus 1135 c~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~sL~~L~l~~c 1183 (1217)
+.+..++...+.++++|+.|++++|+... .+++|+.|+++.+
T Consensus 191 -N~l~~~~~~~~~~l~~L~~L~l~~N~~~~------~~~~l~~l~~~~n 232 (272)
T 3rfs_A 191 -NQLKSVPDGVFDRLTSLQYIWLHDNPWDC------TCPGIRYLSEWIN 232 (272)
T ss_dssp -SCCSCCCTTTTTTCTTCCEEECCSSCBCC------CTTTTHHHHHHHH
T ss_pred -CcCCccCHHHHhCCcCCCEEEccCCCccc------cCcHHHHHHHHHH
Confidence 67888886678899999999999995443 3445666665543
No 95
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.36 E-value=1.1e-11 Score=132.62 Aligned_cols=171 Identities=18% Similarity=0.254 Sum_probs=82.1
Q ss_pred CcccEEEEcCCCCCccccccCCCCCCcceEEecCCCCCcccCCCCC--CCCcceEEEccCcCcccCCC-CCCCCCcceEe
Q 039990 980 ACLRSIRLSYCKNLKSLPKGLNNLSHLHRRSIQGCHNLVSLPEDAL--PSNVVDVSIEDCDKLKAPLP-TGKLSSLQLLT 1056 (1217)
Q Consensus 980 ~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~~~~l~~~~~-~~~l~~L~~L~ 1056 (1217)
.+.+++++++ ..+..+|.++. ++|+.|++++|. ++.++...+ .++|++|++++|.....+.. +..+++|++|+
T Consensus 14 ~~~~~l~~~~-~~l~~~p~~~~--~~l~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 89 (251)
T 3m19_A 14 EGKKEVDCQG-KSLDSVPSGIP--ADTEKLDLQSTG-LATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLG 89 (251)
T ss_dssp GGGTEEECTT-CCCSSCCSCCC--TTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCeEEecCC-CCccccCCCCC--CCCCEEEccCCC-cCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEE
Confidence 3466777776 45667776654 577777777754 444443222 24555555555543333211 24455555555
Q ss_pred eccCCCccccCCC--CCCCCCCeEEecCCCCCccccccccccCCcccceeeccCCCccccccccccCCCCCCcceEeecC
Q 039990 1057 LIECPGIVFFPEE--GLSTNLTDLEISGDNIYKPLVKWGFDKFSSLRKHCINRCSDAVSFPEVEKGVILPTSLTLIRISD 1134 (1217)
Q Consensus 1057 l~~c~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~ 1134 (1217)
+++|. +..++.. ..+++|++|++++|.... ++...|..+++|++|++++| .+..++. ..+..+++|++|++++
T Consensus 90 L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~Ls~N-~l~~~~~--~~~~~l~~L~~L~L~~ 164 (251)
T 3m19_A 90 LANNQ-LASLPLGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTN-QLQSIPA--GAFDKLTNLQTLSLST 164 (251)
T ss_dssp CTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSS-CCCCCCT--TTTTTCTTCCEEECCS
T ss_pred CCCCc-ccccChhHhcccCCCCEEEcCCCcCCC-cChhHhccCCcccEEECcCC-cCCccCH--HHcCcCcCCCEEECCC
Confidence 55533 2222222 234455555555543332 22223444555555555553 2333332 2233444555555554
Q ss_pred CCCCcccCccccCCcccccccccccc
Q 039990 1135 FPKLERLSSKGFHYLLSLEQLKVSSC 1160 (1217)
Q Consensus 1135 c~~l~~l~~~~~~~l~~L~~L~l~~c 1160 (1217)
|.+..++...+..+++|++|++++|
T Consensus 165 -N~l~~~~~~~~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 165 -NQLQSVPHGAFDRLGKLQTITLFGN 189 (251)
T ss_dssp -SCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred -CcCCccCHHHHhCCCCCCEEEeeCC
Confidence 3444444334444555555555554
No 96
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.34 E-value=1.4e-11 Score=131.73 Aligned_cols=177 Identities=18% Similarity=0.184 Sum_probs=114.1
Q ss_pred CccEEeecCCCCCcccccccccccCcceEeeccCCCccccccccCCCCcccEEEEcCCCCCccccccCCCCCCcceEEec
Q 039990 933 TLKCIQIEDCSNFKVLTSECQLSVAVEELTIDSCSNIESIAERFHDDACLRSIRLSYCKNLKSLPKGLNNLSHLHRRSIQ 1012 (1217)
Q Consensus 933 ~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~l~ 1012 (1217)
+.+.++++++ .+..+|..+. +.|+.|++++|......+..+..+++|++|+|++|......+..+..+++|++|+++
T Consensus 15 ~~~~l~~~~~-~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGK-SLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTC-CCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCC-CccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 4556666553 3444554332 466666666654433334445556666666666644333333445666666666666
Q ss_pred CCCCCcccCCCCCCCCcceEEEccCcCcccCCCCCCCCCcceEeeccCCCccccCCC--CCCCCCCeEEecCCCCCcccc
Q 039990 1013 GCHNLVSLPEDALPSNVVDVSIEDCDKLKAPLPTGKLSSLQLLTLIECPGIVFFPEE--GLSTNLTDLEISGDNIYKPLV 1090 (1217)
Q Consensus 1013 ~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~ 1090 (1217)
+|. ++.++. ..+..+++|++|++++| .+..++.. ..+++|++|++++|.... ++
T Consensus 92 ~n~-l~~~~~---------------------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~ 147 (251)
T 3m19_A 92 NNQ-LASLPL---------------------GVFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTNQLQS-IP 147 (251)
T ss_dssp TSC-CCCCCT---------------------TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCC-CC
T ss_pred CCc-ccccCh---------------------hHhcccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCCcCCc-cC
Confidence 642 333332 12367899999999997 55566654 458999999999997664 44
Q ss_pred ccccccCCcccceeeccCCCccccccccccCCCCCCcceEeecCCCCCcc
Q 039990 1091 KWGFDKFSSLRKHCINRCSDAVSFPEVEKGVILPTSLTLIRISDFPKLER 1140 (1217)
Q Consensus 1091 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 1140 (1217)
...+..+++|++|++++|. +..++. ..+..+++|+.|++++ |.+..
T Consensus 148 ~~~~~~l~~L~~L~L~~N~-l~~~~~--~~~~~l~~L~~L~l~~-N~~~c 193 (251)
T 3m19_A 148 AGAFDKLTNLQTLSLSTNQ-LQSVPH--GAFDRLGKLQTITLFG-NQFDC 193 (251)
T ss_dssp TTTTTTCTTCCEEECCSSC-CSCCCT--TTTTTCTTCCEEECCS-CCBCT
T ss_pred HHHcCcCcCCCEEECCCCc-CCccCH--HHHhCCCCCCEEEeeC-CceeC
Confidence 4468899999999999975 455554 3567789999999999 45543
No 97
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.34 E-value=1.2e-11 Score=134.03 Aligned_cols=200 Identities=21% Similarity=0.213 Sum_probs=155.2
Q ss_pred cccccCcceEeeccCCCccccccccCCCCcccEEEEcCCCCCccccccCCCCCCcceEEecCCCCCcccCCCC--CCCCc
Q 039990 952 CQLSVAVEELTIDSCSNIESIAERFHDDACLRSIRLSYCKNLKSLPKGLNNLSHLHRRSIQGCHNLVSLPEDA--LPSNV 1029 (1217)
Q Consensus 952 ~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~--~~~~L 1029 (1217)
...+++|+.|++++|. +..++. +..+++|++|++++|. +..++ .+..+++|++|++++| .++.++... ..++|
T Consensus 37 ~~~l~~L~~L~l~~~~-i~~~~~-l~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L 111 (272)
T 3rfs_A 37 QNELNSIDQIIANNSD-IKSVQG-IQYLPNVRYLALGGNK-LHDIS-ALKELTNLTYLILTGN-QLQSLPNGVFDKLTNL 111 (272)
T ss_dssp HHHHTTCCEEECTTSC-CCCCTT-GGGCTTCCEEECTTSC-CCCCG-GGTTCTTCCEEECTTS-CCCCCCTTTTTTCTTC
T ss_pred cccccceeeeeeCCCC-cccccc-cccCCCCcEEECCCCC-CCCch-hhcCCCCCCEEECCCC-ccCccChhHhcCCcCC
Confidence 4568899999999975 555543 5569999999999975 55554 7889999999999997 577776533 34799
Q ss_pred ceEEEccCcCcccCCC-CCCCCCcceEeeccCCCccccCCC--CCCCCCCeEEecCCCCCccccccccccCCcccceeec
Q 039990 1030 VDVSIEDCDKLKAPLP-TGKLSSLQLLTLIECPGIVFFPEE--GLSTNLTDLEISGDNIYKPLVKWGFDKFSSLRKHCIN 1106 (1217)
Q Consensus 1030 ~~L~l~~~~~l~~~~~-~~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 1106 (1217)
++|++++|.....+.. +..+++|++|++++| .+..++.. ..+++|++|++++|..... +...+..+++|++|+++
T Consensus 112 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~ 189 (272)
T 3rfs_A 112 KELVLVENQLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQLQSL-PEGVFDKLTQLKDLRLY 189 (272)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECC
T ss_pred CEEECCCCcCCccCHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCCCcCcc-CHHHhcCCccCCEEECC
Confidence 9999999987665333 478999999999997 45555553 4689999999999977644 33467899999999999
Q ss_pred cCCCccccccccccCCCCCCcceEeecCCCCCcccCccccCCcccccccccccccCcccCCCC
Q 039990 1107 RCSDAVSFPEVEKGVILPTSLTLIRISDFPKLERLSSKGFHYLLSLEQLKVSSCPNFTSFPEA 1169 (1217)
Q Consensus 1107 ~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~lp~~ 1169 (1217)
+|. +..++. ..+..+++|+.|++++++- ...+++|+.|+++.|...+.+|..
T Consensus 190 ~N~-l~~~~~--~~~~~l~~L~~L~l~~N~~--------~~~~~~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 190 QNQ-LKSVPD--GVFDRLTSLQYIWLHDNPW--------DCTCPGIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp SSC-CSCCCT--TTTTTCTTCCEEECCSSCB--------CCCTTTTHHHHHHHHHTGGGBBCT
T ss_pred CCc-CCccCH--HHHhCCcCCCEEEccCCCc--------cccCcHHHHHHHHHHhCCCcccCc
Confidence 976 444543 3566789999999999532 244668999999999777788864
No 98
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.33 E-value=2.4e-11 Score=141.21 Aligned_cols=302 Identities=12% Similarity=0.046 Sum_probs=174.1
Q ss_pred CccccchhhHHHHHHHH-hcCCCCCCCCcEEEEE--EccCCchHHHHHHHHHhccccC-----CCC-CeEEEEeCCcccH
Q 039990 79 PAVYGRNEDKARILDMV-LKNDPSDAANFRVIPL--VGMGGIGKTTLAQEVYNDKLTD-----DFK-PKAWVCVSDDFDI 149 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L-~~~~~~~~~~~~vv~I--~G~gGiGKTtLA~~v~~~~~~~-----~F~-~~~wv~~~~~~~~ 149 (1217)
..|+||+++++++.+.+ .....+.....+.+.| +|++|+|||+||+++++.. .. .|+ .++|+.+....+.
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 100 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRV-SEAAAKEGLTVKQAYVNAFNAPNL 100 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHH-HHHHHHTTCCEEEEEEEGGGCCSH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHH-HHHHhccCCceeEEEEECCCCCCH
Confidence 57999999999999988 4211000012246666 9999999999999998763 22 233 3567777677788
Q ss_pred HHHHHHHHHHhhcCCCC-CCChhHHHHHHHHHHH--hc-----CcCH-----------HHHHHhhcccCCC---C--CCc
Q 039990 150 LRISKAILESITRSSCG-LTDLNSVQLKLKEAVF--KK-----NKSY-----------ELWQALKSPFMAG---A--PGS 205 (1217)
Q Consensus 150 ~~~~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l~--~~-----~~~~-----------~~~~~l~~~~~~~---~--~gs 205 (1217)
.+++..++.+++..... ..+..++...+...+. ++ +|+. +.+..+...+... + .+.
T Consensus 101 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v 180 (412)
T 1w5s_A 101 YTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRI 180 (412)
T ss_dssp HHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBE
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceE
Confidence 89999999998765331 2334555566666654 22 2322 2233333332211 2 345
Q ss_pred EEEEEcCchHHHHhh--------C-CCceEeccCCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhcc------CC
Q 039990 206 RIIVTTRSMDVALKM--------G-SGKNYELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCK------GL 270 (1217)
Q Consensus 206 ~ilvTtR~~~v~~~~--------~-~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~------g~ 270 (1217)
.||+|||...+...+ . ....+++++++.++++++|...+...... ..-..+.++.|++.++ |.
T Consensus 181 ~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~G~ 258 (412)
T 1w5s_A 181 GFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRD--TVWEPRHLELISDVYGEDKGGDGS 258 (412)
T ss_dssp EEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCT--TSCCHHHHHHHHHHHCGGGTSCCC
T ss_pred EEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCC--CCCChHHHHHHHHHHHHhccCCCc
Confidence 588888765533111 1 12239999999999999998764211110 1122457888999999 99
Q ss_pred chhHHHHHHHh---h---cC--CChhHHHHHHhhccCCCCCCCCchHHHHHhhcCCChhHHHHHHHhhcCC--CCcccCh
Q 039990 271 PLAARALGGLL---R---SK--QRVDEWRAILNSKIWDLEDEIEIPSVLKLSYHHLPSHLKRCFAYCAILP--KDYEFQE 340 (1217)
Q Consensus 271 PLai~~~~~~l---~---~~--~~~~~w~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~f~~~~~fp--~~~~i~~ 340 (1217)
|..+..+.... . .. -+.+.+..+...... ...+.-++..||++.+.++..++.+. .+..+..
T Consensus 259 p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~--------~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~~ 330 (412)
T 1w5s_A 259 ARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA--------ASIQTHELEALSIHELIILRLIAEATLGGMEWINA 330 (412)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC--------------CCSSSSSCHHHHHHHHHHHHHHHTTCSSBCH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc--------cchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccH
Confidence 97555444321 1 11 113444444433110 22344467889999999999888753 2334555
Q ss_pred HHHHHHHH--H-hCCcccccccccHHHHHHHHHHHHHhccCCcccC---CCCCeEEEchhH
Q 039990 341 EELVLLWI--A-EGFIQQSKYSKQLEDWGSEYFHDLLSRSMFQKSS---NNESKFVMHDLV 395 (1217)
Q Consensus 341 ~~li~~w~--~-~g~i~~~~~~~~~~~~~~~~l~~L~~~sl~~~~~---~~~~~~~mh~lv 395 (1217)
.++...+. + .-. .. .........++++.|++.+++.... +...+|++|++.
T Consensus 331 ~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~l~~L~~~gli~~~~~~~~~~g~~~~~~l~ 387 (412)
T 1w5s_A 331 GLLRQRYEDASLTMY-NV---KPRGYTQYHIYLKHLTSLGLVDAKPSGRGMRGRTTLFRLA 387 (412)
T ss_dssp HHHHHHHHHHHHHHS-CC---CCCCHHHHHHHHHHHHHTTSEEEECC-------CCEEEEC
T ss_pred HHHHHHHHHHHHhhc-CC---CCCCHHHHHHHHHHHHhCCCEEeecccCCCCCceeEEEeC
Confidence 55554442 2 111 00 0111244667899999999997643 123345555544
No 99
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.31 E-value=4.8e-11 Score=135.72 Aligned_cols=281 Identities=12% Similarity=0.102 Sum_probs=161.1
Q ss_pred CCCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCc-----ccHHH
Q 039990 77 SEPAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDD-----FDILR 151 (1217)
Q Consensus 77 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~-----~~~~~ 151 (1217)
....||||++++++|.+ +.. +++.|+|++|+|||+|++++++. ... ..+|+.+... .+...
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~---------~~v~i~G~~G~GKT~L~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~ 76 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA---------PITLVLGLRRTGKSSIIKIGINE-LNL---PYIYLDLRKFEERNYISYKD 76 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS---------SEEEEEESTTSSHHHHHHHHHHH-HTC---CEEEEEGGGGTTCSCCCHHH
T ss_pred CHHHhcChHHHHHHHHH-hcC---------CcEEEECCCCCCHHHHHHHHHHh-cCC---CEEEEEchhhccccCCCHHH
Confidence 34579999999999998 632 48999999999999999999876 322 2578887642 23444
Q ss_pred HHHHHHHHhhc-------------CC-----C-----------CCCChhHHHHHHHHHHHhc----CcCHHH--------
Q 039990 152 ISKAILESITR-------------SS-----C-----------GLTDLNSVQLKLKEAVFKK----NKSYEL-------- 190 (1217)
Q Consensus 152 ~~~~i~~~l~~-------------~~-----~-----------~~~~~~~~~~~l~~~l~~~----~~~~~~-------- 190 (1217)
++..+.+.+.. .. . .......+...+.+.-.+. +|+.+.
T Consensus 77 ~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~ 156 (357)
T 2fna_A 77 FLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVN 156 (357)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCC
T ss_pred HHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchh
Confidence 44444443321 00 0 0122333333333211113 222211
Q ss_pred -HHHhhcccCCCCCCcEEEEEcCchHHHHhh-----------CC-CceEeccCCChHHHHHHHHHHHhCCCCCCCCCchh
Q 039990 191 -WQALKSPFMAGAPGSRIIVTTRSMDVALKM-----------GS-GKNYELKHLSDDDCWSVFLNHAFEGIDTGTQGNFE 257 (1217)
Q Consensus 191 -~~~l~~~~~~~~~gs~ilvTtR~~~v~~~~-----------~~-~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~ 257 (1217)
+..+...+ ....+.++|+|+|.......+ +. ...+++.+|+.+|+.+++........ ....
T Consensus 157 ~~~~l~~~~-~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~-~~~~---- 230 (357)
T 2fna_A 157 LLPALAYAY-DNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEAD-IDFK---- 230 (357)
T ss_dssp CHHHHHHHH-HHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHT-CCCC----
T ss_pred HHHHHHHHH-HcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcC-CCCC----
Confidence 12222211 112477899999986542211 11 25789999999999999987542111 1111
Q ss_pred hHHHHHHHhccCCchhHHHHHHHhhcCCChhHHHH-HHhhccCCCCCCCCchHHHH-Hhhc--CCChhHHHHHHHhhcCC
Q 039990 258 STRQRVVAKCKGLPLAARALGGLLRSKQRVDEWRA-ILNSKIWDLEDEIEIPSVLK-LSYH--HLPSHLKRCFAYCAILP 333 (1217)
Q Consensus 258 ~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~-~~~~~~~~~~~~~~i~~~l~-~sy~--~L~~~~k~~f~~~~~fp 333 (1217)
+ ..+|++.++|+|+++..++..+........|.. +.+... ..+..-+. +.++ .+++..+..+..+|.
T Consensus 231 ~-~~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~l~~~~~~~l~~la~-- 301 (357)
T 2fna_A 231 D-YEVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAK------KLILKEFENFLHGREIARKRYLNIMRTLSK-- 301 (357)
T ss_dssp C-HHHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH------HHHHHHHHHHHTTCGGGHHHHHHHHHHHTT--
T ss_pred c-HHHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHH------HHHHHHHHHHhhccccccHHHHHHHHHHHc--
Confidence 1 278999999999999999887654323333322 111100 00111122 2221 688899999999998
Q ss_pred CCcccChHHHHHHHH-HhCCcccccccccHHHHHHHHHHHHHhccCCcccCCCCCeEE-EchhHHHHH
Q 039990 334 KDYEFQEEELVLLWI-AEGFIQQSKYSKQLEDWGSEYFHDLLSRSMFQKSSNNESKFV-MHDLVHDLA 399 (1217)
Q Consensus 334 ~~~~i~~~~li~~w~-~~g~i~~~~~~~~~~~~~~~~l~~L~~~sl~~~~~~~~~~~~-mh~lv~~~~ 399 (1217)
+. +...+....- ..|. .........+++.|++.+++...+ ..|+ .|++++++.
T Consensus 302 -g~--~~~~l~~~~~~~~g~-------~~~~~~~~~~L~~L~~~gli~~~~---~~y~f~~~~~~~~l 356 (357)
T 2fna_A 302 -CG--KWSDVKRALELEEGI-------EISDSEIYNYLTQLTKHSWIIKEG---EKYCPSEPLISLAF 356 (357)
T ss_dssp -CB--CHHHHHHHHHHHHCS-------CCCHHHHHHHHHHHHHTTSEEESS---SCEEESSHHHHHHT
T ss_pred -CC--CHHHHHHHHHHhcCC-------CCCHHHHHHHHHHHHhCCCEEecC---CEEEecCHHHHHhh
Confidence 21 4444432211 1121 011244678899999999998653 3577 477888764
No 100
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.29 E-value=6e-12 Score=137.54 Aligned_cols=165 Identities=21% Similarity=0.203 Sum_probs=78.6
Q ss_pred CCcceEEEcCCCCcccccccccccccChhhhcccccCcEEecccccccccccccccccccccEEeecCCccccccCCCCc
Q 039990 481 CKKLRVLSLEKDNIAEVPISIGCLKCLPEAITSLFNLEILILSYCWCLLKLPSSIGNLVNLHHLDIEGADRLCELPLGMK 560 (1217)
Q Consensus 481 l~~Lr~L~L~~~~i~~lp~~i~~L~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~ 560 (1217)
+++|+.|++++|.++.+| .+..+.+|++|++++| .+..+|. +.++++|++|++++| .+..+|. ++
T Consensus 45 l~~L~~L~l~~~~i~~~~-----------~~~~l~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~ 109 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSVQ-----------GIQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDEN-KVKDLSS-LK 109 (291)
T ss_dssp HHTCCEEECTTSCCCCCT-----------TGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCCGGG-GT
T ss_pred cCcccEEEccCCCcccCh-----------hHhcCCCCCEEEccCC-ccCCCcc-cccCCCCCEEECCCC-cCCCChh-hc
Confidence 445556666665555443 1455556666666655 4555554 555666666666655 4555442 55
Q ss_pred cCcccccccccccccChhhhHHHHhcCCCCCCeEEEEecCCCCchhhHHHHhcccCCCCCccEEEEEeeCCCCCCCCcCC
Q 039990 561 ELKCLRTLTDFINVIDSQEANEAMLRGKKDLEVLKLVWSGGPVDELREKNILDMLKPHCNIKRLEIISYGSTRFPSWVGD 640 (1217)
Q Consensus 561 ~L~~L~~L~~~~n~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~ 640 (1217)
.+++|++|++..|.+... ..+..+++|+.|+++.+..... ..+..+++|+.|+++++....++. +.
T Consensus 110 ~l~~L~~L~L~~n~i~~~----~~l~~l~~L~~L~l~~n~l~~~--------~~l~~l~~L~~L~L~~N~l~~~~~-l~- 175 (291)
T 1h6t_A 110 DLKKLKSLSLEHNGISDI----NGLVHLPQLESLYLGNNKITDI--------TVLSRLTKLDTLSLEDNQISDIVP-LA- 175 (291)
T ss_dssp TCTTCCEEECTTSCCCCC----GGGGGCTTCCEEECCSSCCCCC--------GGGGGCTTCSEEECCSSCCCCCGG-GT-
T ss_pred cCCCCCEEECCCCcCCCC----hhhcCCCCCCEEEccCCcCCcc--------hhhccCCCCCEEEccCCccccchh-hc-
Confidence 555555555544433321 1233344444444433221110 123334445555555554444433 21
Q ss_pred CCcCcccEEEEecCCCCCCCCCCCCcCCCCeeEEcC
Q 039990 641 PSFSNVAVLKLENCDRCTSLPSLGQLCSLKDLTIVG 676 (1217)
Q Consensus 641 ~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~l~~ 676 (1217)
.+++|+.|++++| .+..++.+..+++|+.|++++
T Consensus 176 -~l~~L~~L~L~~N-~i~~l~~l~~l~~L~~L~l~~ 209 (291)
T 1h6t_A 176 -GLTKLQNLYLSKN-HISDLRALAGLKNLDVLELFS 209 (291)
T ss_dssp -TCTTCCEEECCSS-CCCBCGGGTTCTTCSEEEEEE
T ss_pred -CCCccCEEECCCC-cCCCChhhccCCCCCEEECcC
Confidence 2455555555553 233444455555555555543
No 101
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.28 E-value=1.3e-13 Score=158.55 Aligned_cols=223 Identities=13% Similarity=0.105 Sum_probs=134.1
Q ss_pred CCccEEeecCCCCCcc----cccccccccCcceEeeccCC--Ccc-ccccc-------cCCCCcccEEEEcCCCCCc---
Q 039990 932 VTLKCIQIEDCSNFKV----LTSECQLSVAVEELTIDSCS--NIE-SIAER-------FHDDACLRSIRLSYCKNLK--- 994 (1217)
Q Consensus 932 ~~L~~L~l~~~~~l~~----~~~~~~~l~~L~~L~l~~~~--~l~-~l~~~-------~~~l~~L~~L~L~~c~~l~--- 994 (1217)
++|+.|++++|..... ++..+..+++|++|++++|. .+. .+|.. +..+++|++|+|++|..-.
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 111 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ 111 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence 3577777777654433 23345567778888887762 221 22322 2457788888888865433
Q ss_pred -cccccCCCCCCcceEEecCCCCCcccCCCCCC---------------CCcceEEEccCcCcccCC-----CCCCCCCcc
Q 039990 995 -SLPKGLNNLSHLHRRSIQGCHNLVSLPEDALP---------------SNVVDVSIEDCDKLKAPL-----PTGKLSSLQ 1053 (1217)
Q Consensus 995 -~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~---------------~~L~~L~l~~~~~l~~~~-----~~~~l~~L~ 1053 (1217)
.+|..+..+++|++|++++|. ++......++ ++|++|++++|....... .+..+++|+
T Consensus 112 ~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 190 (386)
T 2ca6_A 112 EPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH 190 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHhCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC
Confidence 356667777888888888865 3321100000 477777777776431111 123567888
Q ss_pred eEeeccCCCcc-----ccC-CCCCCCCCCeEEecCCCCC----ccccccccccCCcccceeeccCCCccc----cccccc
Q 039990 1054 LLTLIECPGIV-----FFP-EEGLSTNLTDLEISGDNIY----KPLVKWGFDKFSSLRKHCINRCSDAVS----FPEVEK 1119 (1217)
Q Consensus 1054 ~L~l~~c~~l~-----~~~-~~~~~~~L~~L~l~~~~~~----~~~~~~~~~~l~~L~~L~l~~~~~l~~----~~~~~~ 1119 (1217)
+|++++|..-. .++ ....+++|++|++++|... ..++. .+..+++|++|+|++|..-.. ++.
T Consensus 191 ~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~-~l~~~~~L~~L~L~~n~i~~~~~~~l~~--- 266 (386)
T 2ca6_A 191 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI-ALKSWPNLRELGLNDCLLSARGAAAVVD--- 266 (386)
T ss_dssp EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH-HGGGCTTCCEEECTTCCCCHHHHHHHHH---
T ss_pred EEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH-HHccCCCcCEEECCCCCCchhhHHHHHH---
Confidence 88888774321 122 2245678888888888764 33333 567788888888888763222 222
Q ss_pred cC--CCCCCcceEeecCCCCCcc-----cCcccc-CCccccccccccccc
Q 039990 1120 GV--ILPTSLTLIRISDFPKLER-----LSSKGF-HYLLSLEQLKVSSCP 1161 (1217)
Q Consensus 1120 ~~--~~~~~L~~L~l~~c~~l~~-----l~~~~~-~~l~~L~~L~l~~c~ 1161 (1217)
.+ ..+++|++|++++ +.+.. +| ..+ .++++|++|++++|+
T Consensus 267 ~l~~~~~~~L~~L~L~~-n~i~~~g~~~l~-~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 267 AFSKLENIGLQTLRLQY-NEIELDAVRTLK-TVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp HHHTCSSCCCCEEECCS-SCCBHHHHHHHH-HHHHHHCTTCCEEECTTSB
T ss_pred HHhhccCCCeEEEECcC-CcCCHHHHHHHH-HHHHhcCCCceEEEccCCc
Confidence 22 2267888888887 45665 66 344 567888888888883
No 102
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.28 E-value=2.6e-11 Score=143.58 Aligned_cols=185 Identities=17% Similarity=0.202 Sum_probs=85.9
Q ss_pred CccEEeecCCCCCcccccccccccCcceEeeccCCCccccccccCCCCcccEEEEcCCCCCccccccCCCCCCcceEEec
Q 039990 933 TLKCIQIEDCSNFKVLTSECQLSVAVEELTIDSCSNIESIAERFHDDACLRSIRLSYCKNLKSLPKGLNNLSHLHRRSIQ 1012 (1217)
Q Consensus 933 ~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~l~ 1012 (1217)
+|+.|++++|.. ..+|..+ +++|++|++++|. ++.+| ..+++|++|++++| .+..+|. +.. +|+.|+++
T Consensus 60 ~L~~L~Ls~n~L-~~lp~~l--~~~L~~L~Ls~N~-l~~ip---~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNL-SSLPDNL--PPQITVLEITQNA-LISLP---ELPASLEYLDACDN-RLSTLPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCC-SCCCSCC--CTTCSEEECCSSC-CSCCC---CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCC-CccCHhH--cCCCCEEECcCCC-Ccccc---cccCCCCEEEccCC-CCCCcch-hhc--CCCEEECC
Confidence 455566655432 2344333 2455555555542 33444 12455555555553 2333444 322 55555555
Q ss_pred CCCCCcccCCCCCCCCcceEEEccCcCcccCCCCCCCCCcceEeeccCCCccccCCCCCCCCCCeEEecCCCCCcccccc
Q 039990 1013 GCHNLVSLPEDALPSNVVDVSIEDCDKLKAPLPTGKLSSLQLLTLIECPGIVFFPEEGLSTNLTDLEISGDNIYKPLVKW 1092 (1217)
Q Consensus 1013 ~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 1092 (1217)
+| .++.+|. .+++|++|++++|. +..+|. .+++|++|++++|.... ++.
T Consensus 129 ~N-~l~~lp~-------------------------~l~~L~~L~Ls~N~-l~~lp~--~l~~L~~L~Ls~N~L~~-lp~- 177 (571)
T 3cvr_A 129 NN-QLTMLPE-------------------------LPALLEYINADNNQ-LTMLPE--LPTSLEVLSVRNNQLTF-LPE- 177 (571)
T ss_dssp SS-CCSCCCC-------------------------CCTTCCEEECCSSC-CSCCCC--CCTTCCEEECCSSCCSC-CCC-
T ss_pred CC-cCCCCCC-------------------------cCccccEEeCCCCc-cCcCCC--cCCCcCEEECCCCCCCC-cch-
Confidence 53 2444443 34445555554432 223333 34455555555554333 222
Q ss_pred ccccCCcccceeeccCCCcccccccccc--CCCCCCcceEeecCCCCCcccCccccCCcccccccccccccCcccC
Q 039990 1093 GFDKFSSLRKHCINRCSDAVSFPEVEKG--VILPTSLTLIRISDFPKLERLSSKGFHYLLSLEQLKVSSCPNFTSF 1166 (1217)
Q Consensus 1093 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~--~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~l 1166 (1217)
+. ++|+.|++++| .+..+|. ... +...+.|+.|++++ |.++.+| ..+.++++|+.|++++|+..+.+
T Consensus 178 -l~--~~L~~L~Ls~N-~L~~lp~-~~~~L~~~~~~L~~L~Ls~-N~l~~lp-~~l~~l~~L~~L~L~~N~l~~~~ 246 (571)
T 3cvr_A 178 -LP--ESLEALDVSTN-LLESLPA-VPVRNHHSEETEIFFRCRE-NRITHIP-ENILSLDPTCTIILEDNPLSSRI 246 (571)
T ss_dssp -CC--TTCCEEECCSS-CCSSCCC-CC--------CCEEEECCS-SCCCCCC-GGGGGSCTTEEEECCSSSCCHHH
T ss_pred -hh--CCCCEEECcCC-CCCchhh-HHHhhhcccccceEEecCC-CcceecC-HHHhcCCCCCEEEeeCCcCCCcC
Confidence 22 55555555554 2334443 100 00112226666666 5666666 44555666777777766443333
No 103
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.27 E-value=4.7e-13 Score=153.80 Aligned_cols=180 Identities=18% Similarity=0.117 Sum_probs=103.2
Q ss_pred ccccccCccceEccccccccccccccchhhhhhhcCCCCcceEEEcCCCCccccccccc-ccccChhhhcccccCcEEec
Q 039990 444 KFLDEVENLRTFLPIFMEDFFISFCISPMVLSDLLPKCKKLRVLSLEKDNIAEVPISIG-CLKCLPEAITSLFNLEILIL 522 (1217)
Q Consensus 444 ~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~-~L~~lp~~i~~L~~L~~L~L 522 (1217)
..+..+++|++|.+.++... ......+...|..+++|++|+|++|.+..+...+. .+..+...+..+++|++|+|
T Consensus 26 ~~l~~~~~L~~L~L~~n~i~----~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L 101 (386)
T 2ca6_A 26 AVLLEDDSVKEIVLSGNTIG----TEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL 101 (386)
T ss_dssp HHHHHCSCCCEEECTTSEEC----HHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred HHHhcCCCccEEECCCCCCC----HHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence 34556777888877665321 01122344567788899999998877664433110 11123455578889999999
Q ss_pred cccccccc-----ccccccccccccEEeecCCccccc-----cCCCCccC---------cccccccccccccChh--hhH
Q 039990 523 SYCWCLLK-----LPSSIGNLVNLHHLDIEGADRLCE-----LPLGMKEL---------KCLRTLTDFINVIDSQ--EAN 581 (1217)
Q Consensus 523 ~~~~~l~~-----lp~~i~~L~~L~~L~l~~~~~l~~-----lp~~i~~L---------~~L~~L~~~~n~~~~~--~~~ 581 (1217)
++| .+.. +|..+..+++|++|++++| .+.. ++..+..+ ++|++|++..|.+... ...
T Consensus 102 s~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l 179 (386)
T 2ca6_A 102 SDN-AFGPTAQEPLIDFLSKHTPLEHLYLHNN-GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEW 179 (386)
T ss_dssp CSC-CCCTTTHHHHHHHHHHCTTCCEEECCSS-CCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHH
T ss_pred CCC-cCCHHHHHHHHHHHHhCCCCCEEECcCC-CCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHH
Confidence 888 4554 7777888889999999888 4542 22223333 6777777666655422 222
Q ss_pred HHHhcCCCCCCeEEEEecCCCCchhhHHHHhc-ccCCCCCccEEEEEeeCC
Q 039990 582 EAMLRGKKDLEVLKLVWSGGPVDELREKNILD-MLKPHCNIKRLEIISYGS 631 (1217)
Q Consensus 582 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~-~l~~~~~L~~L~l~~~~~ 631 (1217)
...+..+++|+.|++..+..... ....... .+..+++|+.|+++++..
T Consensus 180 ~~~l~~~~~L~~L~L~~n~l~~~--g~~~l~~~~l~~~~~L~~L~Ls~n~l 228 (386)
T 2ca6_A 180 AKTFQSHRLLHTVKMVQNGIRPE--GIEHLLLEGLAYCQELKVLDLQDNTF 228 (386)
T ss_dssp HHHHHHCTTCCEEECCSSCCCHH--HHHHHHHTTGGGCTTCCEEECCSSCC
T ss_pred HHHHHhCCCcCEEECcCCCCCHh--HHHHHHHHHhhcCCCccEEECcCCCC
Confidence 23455566666666654432111 1111222 444555555555555443
No 104
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.25 E-value=2e-11 Score=124.96 Aligned_cols=151 Identities=15% Similarity=0.128 Sum_probs=70.9
Q ss_pred CCCCCcceEEecCCCCCcccCCCCCCCCcceEEEccCcCcccCCCCCCCCCcceEeeccCCCccccCCCCCCCCCCeEEe
Q 039990 1001 NNLSHLHRRSIQGCHNLVSLPEDALPSNVVDVSIEDCDKLKAPLPTGKLSSLQLLTLIECPGIVFFPEEGLSTNLTDLEI 1080 (1217)
Q Consensus 1001 ~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l 1080 (1217)
..+++|+.|++++| .++.++.....++|++|++++| .+..+..+..+++|++|++++|
T Consensus 41 ~~l~~L~~L~l~~n-~i~~l~~l~~l~~L~~L~l~~n-~~~~~~~l~~l~~L~~L~l~~n-------------------- 98 (197)
T 4ezg_A 41 AQMNSLTYITLANI-NVTDLTGIEYAHNIKDLTINNI-HATNYNPISGLSNLERLRIMGK-------------------- 98 (197)
T ss_dssp HHHHTCCEEEEESS-CCSCCTTGGGCTTCSEEEEESC-CCSCCGGGTTCTTCCEEEEECT--------------------
T ss_pred hhcCCccEEeccCC-CccChHHHhcCCCCCEEEccCC-CCCcchhhhcCCCCCEEEeECC--------------------
Confidence 45677888888885 4556653233345555555555 2222223344555555555554
Q ss_pred cCCCCCccccccccccCCcccceeeccCCCccccccccccCCCCCCcceEeecCCCCCcccCccccCCcccccccccccc
Q 039990 1081 SGDNIYKPLVKWGFDKFSSLRKHCINRCSDAVSFPEVEKGVILPTSLTLIRISDFPKLERLSSKGFHYLLSLEQLKVSSC 1160 (1217)
Q Consensus 1081 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~L~~L~l~~c 1160 (1217)
......+. .+..+++|++|++++|......+. .+..+++|++|++++|..++.+| .+.++++|+.|++++|
T Consensus 99 ---~l~~~~~~-~l~~l~~L~~L~Ls~n~i~~~~~~---~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~n 169 (197)
T 4ezg_A 99 ---DVTSDKIP-NLSGLTSLTLLDISHSAHDDSILT---KINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFD 169 (197)
T ss_dssp ---TCBGGGSC-CCTTCTTCCEEECCSSBCBGGGHH---HHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTTB
T ss_pred ---ccCcccCh-hhcCCCCCCEEEecCCccCcHhHH---HHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCCC
Confidence 33322221 234444444444444432222222 22334455555555433344443 3444555555555555
Q ss_pred cCcccCCCCCCCCccceEeccCC
Q 039990 1161 PNFTSFPEAGFPSSLLFLDIQGC 1183 (1217)
Q Consensus 1161 ~~l~~lp~~~~~~sL~~L~l~~c 1183 (1217)
.++.++....+++|+.|+++++
T Consensus 170 -~i~~~~~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 170 -GVHDYRGIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp -CCCCCTTGGGCSSCCEEEECBC
T ss_pred -CCcChHHhccCCCCCEEEeeCc
Confidence 3444442233444555555444
No 105
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.22 E-value=1e-10 Score=138.49 Aligned_cols=155 Identities=21% Similarity=0.252 Sum_probs=107.2
Q ss_pred CCcceEEecCCCCCcccCCCCCCCCcceEEEccCcCcccCCCCCCCCCcceEeeccCCCccccCCCCCCCCCCeEEecCC
Q 039990 1004 SHLHRRSIQGCHNLVSLPEDALPSNVVDVSIEDCDKLKAPLPTGKLSSLQLLTLIECPGIVFFPEEGLSTNLTDLEISGD 1083 (1217)
Q Consensus 1004 ~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~ 1083 (1217)
++|+.|++++| .++.+| ..+++|+.|++++|.....+. +.. +|++|++++|. +..+|. .+++|++|++++|
T Consensus 80 ~~L~~L~Ls~N-~l~~ip--~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~-l~~lp~--~l~~L~~L~Ls~N 150 (571)
T 3cvr_A 80 PQITVLEITQN-ALISLP--ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQ-LTMLPE--LPALLEYINADNN 150 (571)
T ss_dssp TTCSEEECCSS-CCSCCC--CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSC-CSCCCC--CCTTCCEEECCSS
T ss_pred CCCCEEECcCC-CCcccc--cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCc-CCCCCC--cCccccEEeCCCC
Confidence 44444444443 233444 233445555555543333211 222 78888888864 455666 7899999999999
Q ss_pred CCCccccccccccCCcccceeeccCCCccccccccccCCCCCCcceEeecCCCCCcccCccccCCcccc-------cccc
Q 039990 1084 NIYKPLVKWGFDKFSSLRKHCINRCSDAVSFPEVEKGVILPTSLTLIRISDFPKLERLSSKGFHYLLSL-------EQLK 1156 (1217)
Q Consensus 1084 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~L-------~~L~ 1156 (1217)
.... ++. .+++|++|++++|. +..+|. + .++|+.|++++ |+++.+|. +.. +| +.|+
T Consensus 151 ~l~~-lp~----~l~~L~~L~Ls~N~-L~~lp~----l--~~~L~~L~Ls~-N~L~~lp~--~~~--~L~~~~~~L~~L~ 213 (571)
T 3cvr_A 151 QLTM-LPE----LPTSLEVLSVRNNQ-LTFLPE----L--PESLEALDVST-NLLESLPA--VPV--RNHHSEETEIFFR 213 (571)
T ss_dssp CCSC-CCC----CCTTCCEEECCSSC-CSCCCC----C--CTTCCEEECCS-SCCSSCCC--CC----------CCEEEE
T ss_pred ccCc-CCC----cCCCcCEEECCCCC-CCCcch----h--hCCCCEEECcC-CCCCchhh--HHH--hhhcccccceEEe
Confidence 8765 443 57899999999975 555775 2 28999999999 78999994 554 77 9999
Q ss_pred cccccCcccCCCC-CCCCccceEeccCCcc
Q 039990 1157 VSSCPNFTSFPEA-GFPSSLLFLDIQGCPL 1185 (1217)
Q Consensus 1157 l~~c~~l~~lp~~-~~~~sL~~L~l~~c~~ 1185 (1217)
+++| .++.+|.. ..+++|+.|++++|+-
T Consensus 214 Ls~N-~l~~lp~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 214 CREN-RITHIPENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp CCSS-CCCCCCGGGGGSCTTEEEECCSSSC
T ss_pred cCCC-cceecCHHHhcCCCCCEEEeeCCcC
Confidence 9999 88999975 4489999999999964
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.21 E-value=2e-11 Score=146.45 Aligned_cols=166 Identities=21% Similarity=0.208 Sum_probs=87.4
Q ss_pred CCCcceEEEcCCCCcccccccccccccChhhhcccccCcEEecccccccccccccccccccccEEeecCCccccccCCCC
Q 039990 480 KCKKLRVLSLEKDNIAEVPISIGCLKCLPEAITSLFNLEILILSYCWCLLKLPSSIGNLVNLHHLDIEGADRLCELPLGM 559 (1217)
Q Consensus 480 ~l~~Lr~L~L~~~~i~~lp~~i~~L~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i 559 (1217)
.+..|+.|+|++|.+..+| .++.+.+|++|+|++| .+..+|. +..+++|++|+|++| .+..+| .+
T Consensus 41 ~L~~L~~L~l~~n~i~~l~-----------~l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~-~l 105 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSVQ-----------GIQYLPNVTKLFLNGN-KLTDIKP-LTNLKNLGWLFLDEN-KIKDLS-SL 105 (605)
T ss_dssp HHTTCCCCBCTTCCCCCCT-----------TGGGCTTCCEEECTTS-CCCCCGG-GGGCTTCCEEECCSS-CCCCCT-TS
T ss_pred cCCCCCEEECcCCCCCCCh-----------HHccCCCCCEEEeeCC-CCCCChh-hccCCCCCEEECcCC-CCCCCh-hh
Confidence 4455666666666665543 2555666666666666 4555554 666666666666666 555554 45
Q ss_pred ccCcccccccccccccChhhhHHHHhcCCCCCCeEEEEecCCCCchhhHHHHhcccCCCCCccEEEEEeeCCCCCCCCcC
Q 039990 560 KELKCLRTLTDFINVIDSQEANEAMLRGKKDLEVLKLVWSGGPVDELREKNILDMLKPHCNIKRLEIISYGSTRFPSWVG 639 (1217)
Q Consensus 560 ~~L~~L~~L~~~~n~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~ 639 (1217)
+.+++|++|++..|.+... ..+..+++|+.|+++.+..... ..+..+++|+.|+++++.+..++. +.
T Consensus 106 ~~l~~L~~L~Ls~N~l~~l----~~l~~l~~L~~L~Ls~N~l~~l--------~~l~~l~~L~~L~Ls~N~l~~~~~-l~ 172 (605)
T 1m9s_A 106 KDLKKLKSLSLEHNGISDI----NGLVHLPQLESLYLGNNKITDI--------TVLSRLTKLDTLSLEDNQISDIVP-LA 172 (605)
T ss_dssp TTCTTCCEEECTTSCCCCC----GGGGGCTTCSEEECCSSCCCCC--------GGGGSCTTCSEEECCSSCCCCCGG-GT
T ss_pred ccCCCCCEEEecCCCCCCC----ccccCCCccCEEECCCCccCCc--------hhhcccCCCCEEECcCCcCCCchh-hc
Confidence 6666666666555444332 1234445555555543322110 223344555555555555544433 22
Q ss_pred CCCcCcccEEEEecCCCCCCCCCCCCcCCCCeeEEcC
Q 039990 640 DPSFSNVAVLKLENCDRCTSLPSLGQLCSLKDLTIVG 676 (1217)
Q Consensus 640 ~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~l~~ 676 (1217)
.+++|+.|+|++| .+..++.+..+++|+.|+|++
T Consensus 173 --~l~~L~~L~Ls~N-~i~~l~~l~~l~~L~~L~L~~ 206 (605)
T 1m9s_A 173 --GLTKLQNLYLSKN-HISDLRALAGLKNLDVLELFS 206 (605)
T ss_dssp --TCTTCCEEECCSS-CCCBCGGGTTCTTCSEEECCS
T ss_pred --cCCCCCEEECcCC-CCCCChHHccCCCCCEEEccC
Confidence 2555666666554 233445555555666666554
No 107
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.19 E-value=5.1e-11 Score=130.13 Aligned_cols=173 Identities=16% Similarity=0.126 Sum_probs=136.7
Q ss_pred CCcccEEEEcCCCCCccccccCCCCCCcceEEecCCCCCcccCCCCCCCCcceEEEccCcCcccCCCCCCCCCcceEeec
Q 039990 979 DACLRSIRLSYCKNLKSLPKGLNNLSHLHRRSIQGCHNLVSLPEDALPSNVVDVSIEDCDKLKAPLPTGKLSSLQLLTLI 1058 (1217)
Q Consensus 979 l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~ 1058 (1217)
+++|+.|++++| .+..++ ++..+++|+.|++++| .++.++.....++|+.|++++|..... ..+..+++|++|+++
T Consensus 45 l~~L~~L~l~~~-~i~~~~-~~~~l~~L~~L~L~~n-~l~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~ 120 (291)
T 1h6t_A 45 LNSIDQIIANNS-DIKSVQ-GIQYLPNVTKLFLNGN-KLTDIKPLANLKNLGWLFLDENKVKDL-SSLKDLKKLKSLSLE 120 (291)
T ss_dssp HHTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSCCCCG-GGGTTCTTCCEEECT
T ss_pred cCcccEEEccCC-CcccCh-hHhcCCCCCEEEccCC-ccCCCcccccCCCCCEEECCCCcCCCC-hhhccCCCCCEEECC
Confidence 688999999996 466664 4888999999999997 466666544457999999999875554 457889999999999
Q ss_pred cCCCccccCCCCCCCCCCeEEecCCCCCccccccccccCCcccceeeccCCCccccccccccCCCCCCcceEeecCCCCC
Q 039990 1059 ECPGIVFFPEEGLSTNLTDLEISGDNIYKPLVKWGFDKFSSLRKHCINRCSDAVSFPEVEKGVILPTSLTLIRISDFPKL 1138 (1217)
Q Consensus 1059 ~c~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l 1138 (1217)
+|. +..++....+++|++|++++|..... ..+..+++|++|++++|. +..++. +..+++|+.|++++ +.+
T Consensus 121 ~n~-i~~~~~l~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~L~~N~-l~~~~~----l~~l~~L~~L~L~~-N~i 190 (291)
T 1h6t_A 121 HNG-ISDINGLVHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQ-ISDIVP----LAGLTKLQNLYLSK-NHI 190 (291)
T ss_dssp TSC-CCCCGGGGGCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSC-CCCCGG----GTTCTTCCEEECCS-SCC
T ss_pred CCc-CCCChhhcCCCCCCEEEccCCcCCcc---hhhccCCCCCEEEccCCc-cccchh----hcCCCccCEEECCC-CcC
Confidence 974 45555556688999999999977654 257889999999999974 444443 56789999999999 688
Q ss_pred cccCccccCCcccccccccccccCcccCCC
Q 039990 1139 ERLSSKGFHYLLSLEQLKVSSCPNFTSFPE 1168 (1217)
Q Consensus 1139 ~~l~~~~~~~l~~L~~L~l~~c~~l~~lp~ 1168 (1217)
..++ .+..+++|+.|++++| .+...|.
T Consensus 191 ~~l~--~l~~l~~L~~L~l~~n-~i~~~~~ 217 (291)
T 1h6t_A 191 SDLR--ALAGLKNLDVLELFSQ-ECLNKPI 217 (291)
T ss_dssp CBCG--GGTTCTTCSEEEEEEE-EEECCCE
T ss_pred CCCh--hhccCCCCCEEECcCC-cccCCcc
Confidence 8887 4889999999999999 4555543
No 108
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.19 E-value=5.2e-11 Score=121.81 Aligned_cols=149 Identities=15% Similarity=0.129 Sum_probs=103.9
Q ss_pred CCCcccEEEEcCCCCCccccccCCCCCCcceEEecCCCCCcccCCCCCCCCcceEEEccCcCcc-cCCCCCCCCCcceEe
Q 039990 978 DDACLRSIRLSYCKNLKSLPKGLNNLSHLHRRSIQGCHNLVSLPEDALPSNVVDVSIEDCDKLK-APLPTGKLSSLQLLT 1056 (1217)
Q Consensus 978 ~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~-~~~~~~~l~~L~~L~ 1056 (1217)
.+++|++|++++| .+..+| ++..+++|++|++++| .++.++.....++|++|++++|.... .+..+..+++|++|+
T Consensus 42 ~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~l~~n-~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 42 QMNSLTYITLANI-NVTDLT-GIEYAHNIKDLTINNI-HATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHHTCCEEEEESS-CCSCCT-TGGGCTTCSEEEEESC-CCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred hcCCccEEeccCC-CccChH-HHhcCCCCCEEEccCC-CCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 3688999999995 466787 7899999999999998 67777654455899999999987654 234456677777777
Q ss_pred eccCCCccccCCCCCCCCCCeEEecCCCCCccccccccccCCcccceeeccCCCccccccccccCCCCCCcceEeecCCC
Q 039990 1057 LIECPGIVFFPEEGLSTNLTDLEISGDNIYKPLVKWGFDKFSSLRKHCINRCSDAVSFPEVEKGVILPTSLTLIRISDFP 1136 (1217)
Q Consensus 1057 l~~c~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~ 1136 (1217)
+++|.. ....+. .+..+++|++|++++|..++.++. +..+++|+.|++++ +
T Consensus 119 Ls~n~i-----------------------~~~~~~-~l~~l~~L~~L~L~~n~~i~~~~~----l~~l~~L~~L~l~~-n 169 (197)
T 4ezg_A 119 ISHSAH-----------------------DDSILT-KINTLPKVNSIDLSYNGAITDIMP----LKTLPELKSLNIQF-D 169 (197)
T ss_dssp CCSSBC-----------------------BGGGHH-HHTTCSSCCEEECCSCTBCCCCGG----GGGCSSCCEEECTT-B
T ss_pred ecCCcc-----------------------CcHhHH-HHhhCCCCCEEEccCCCCccccHh----hcCCCCCCEEECCC-C
Confidence 766532 221121 345666666666666654555542 34567777777777 4
Q ss_pred CCcccCccccCCcccccccccccc
Q 039990 1137 KLERLSSKGFHYLLSLEQLKVSSC 1160 (1217)
Q Consensus 1137 ~l~~l~~~~~~~l~~L~~L~l~~c 1160 (1217)
.+..++ .+..+++|++|++++|
T Consensus 170 ~i~~~~--~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 170 GVHDYR--GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp CCCCCT--TGGGCSSCCEEEECBC
T ss_pred CCcChH--HhccCCCCCEEEeeCc
Confidence 566665 5677778888888877
No 109
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.18 E-value=1.1e-12 Score=148.93 Aligned_cols=229 Identities=11% Similarity=0.015 Sum_probs=121.1
Q ss_pred CCCCCccEEeecCCCCCcccc----ccccccc-CcceEeeccCCCccccccccCCC-----CcccEEEEcCCCCCccccc
Q 039990 929 RLPVTLKCIQIEDCSNFKVLT----SECQLSV-AVEELTIDSCSNIESIAERFHDD-----ACLRSIRLSYCKNLKSLPK 998 (1217)
Q Consensus 929 ~~~~~L~~L~l~~~~~l~~~~----~~~~~l~-~L~~L~l~~~~~l~~l~~~~~~l-----~~L~~L~L~~c~~l~~l~~ 998 (1217)
..+.+|+.|++++|......+ ..+..++ +|++|++++|..-...+..+..+ ++|++|++++|......+.
T Consensus 19 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~ 98 (362)
T 3goz_A 19 SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSD 98 (362)
T ss_dssp TSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHH
T ss_pred hCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHH
Confidence 445567778887776433333 4455666 78888887764333333333322 7788888887653322222
Q ss_pred c----CCCC-CCcceEEecCCCCCcccCCC-------CCCCCcceEEEccCcCcccCC-----CCCCCC-CcceEeeccC
Q 039990 999 G----LNNL-SHLHRRSIQGCHNLVSLPED-------ALPSNVVDVSIEDCDKLKAPL-----PTGKLS-SLQLLTLIEC 1060 (1217)
Q Consensus 999 ~----l~~l-~~L~~L~l~~c~~l~~l~~~-------~~~~~L~~L~l~~~~~l~~~~-----~~~~l~-~L~~L~l~~c 1060 (1217)
. +..+ ++|++|++++|. ++..+.. .++++|++|++++|....... .+..++ +|++|++++|
T Consensus 99 ~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n 177 (362)
T 3goz_A 99 ELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGN 177 (362)
T ss_dssp HHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS
T ss_pred HHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCC
Confidence 2 3334 678888887764 4444321 113577777777765432200 002233 7777777776
Q ss_pred CCccccCCC------CCC-CCCCeEEecCCCCCcc----cccccccc-CCcccceeeccCCCccccccc-cccCCCCCCc
Q 039990 1061 PGIVFFPEE------GLS-TNLTDLEISGDNIYKP----LVKWGFDK-FSSLRKHCINRCSDAVSFPEV-EKGVILPTSL 1127 (1217)
Q Consensus 1061 ~~l~~~~~~------~~~-~~L~~L~l~~~~~~~~----~~~~~~~~-l~~L~~L~l~~~~~l~~~~~~-~~~~~~~~~L 1127 (1217)
. +...... ... ++|++|++++|..... ++. .+.. .++|++|++++|..-..-+.. ...+..+++|
T Consensus 178 ~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~-~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L 255 (362)
T 3goz_A 178 N-LASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAY-IFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHL 255 (362)
T ss_dssp C-GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHH-HHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTC
T ss_pred C-CchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHH-HHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCc
Confidence 4 2222110 112 4777777777765531 222 2333 347777777776432211110 0223455677
Q ss_pred ceEeecCCCCCcccCc-------cccCCccccccccccccc
Q 039990 1128 TLIRISDFPKLERLSS-------KGFHYLLSLEQLKVSSCP 1161 (1217)
Q Consensus 1128 ~~L~l~~c~~l~~l~~-------~~~~~l~~L~~L~l~~c~ 1161 (1217)
++|++++| .+..+.. ..+.++++|+.|++++|+
T Consensus 256 ~~L~L~~n-~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 256 QTVYLDYD-IVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp SEEEEEHH-HHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred cEEEeccC-CccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 77777774 3222221 345566777777777773
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.17 E-value=8.9e-11 Score=140.90 Aligned_cols=76 Identities=20% Similarity=0.223 Sum_probs=38.6
Q ss_pred CccEEeecCCCCCcccccccccccCcceEeeccCCCccccccccCCCCcccEEEEcCCCCCccccccCCCCCCcceEEec
Q 039990 933 TLKCIQIEDCSNFKVLTSECQLSVAVEELTIDSCSNIESIAERFHDDACLRSIRLSYCKNLKSLPKGLNNLSHLHRRSIQ 1012 (1217)
Q Consensus 933 ~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~l~ 1012 (1217)
+|+.|++++|.. ..++ .+..+++|+.|+|++|. +..++. +..+++|+.|+|++|. +..+| .+..+++|+.|+++
T Consensus 44 ~L~~L~l~~n~i-~~l~-~l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L~Ls 117 (605)
T 1m9s_A 44 SIDQIIANNSDI-KSVQ-GIQYLPNVTKLFLNGNK-LTDIKP-LTNLKNLGWLFLDENK-IKDLS-SLKDLKKLKSLSLE 117 (605)
T ss_dssp TCCCCBCTTCCC-CCCT-TGGGCTTCCEEECTTSC-CCCCGG-GGGCTTCCEEECCSSC-CCCCT-TSTTCTTCCEEECT
T ss_pred CCCEEECcCCCC-CCCh-HHccCCCCCEEEeeCCC-CCCChh-hccCCCCCEEECcCCC-CCCCh-hhccCCCCCEEEec
Confidence 455566655432 2233 34555666666666543 233332 4445566666666542 33343 45555556666665
Q ss_pred CC
Q 039990 1013 GC 1014 (1217)
Q Consensus 1013 ~c 1014 (1217)
+|
T Consensus 118 ~N 119 (605)
T 1m9s_A 118 HN 119 (605)
T ss_dssp TS
T ss_pred CC
Confidence 54
No 111
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.17 E-value=5.1e-12 Score=143.41 Aligned_cols=240 Identities=13% Similarity=0.067 Sum_probs=162.4
Q ss_pred EeecCCCCCcccccccccccCcceEeeccCCCccccc-----cccCCCC-cccEEEEcCCCCCccccccCCCC-----CC
Q 039990 937 IQIEDCSNFKVLTSECQLSVAVEELTIDSCSNIESIA-----ERFHDDA-CLRSIRLSYCKNLKSLPKGLNNL-----SH 1005 (1217)
Q Consensus 937 L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~-----~~~~~l~-~L~~L~L~~c~~l~~l~~~l~~l-----~~ 1005 (1217)
+.++.+.....+|..+...++|++|++++|. +...+ ..+..++ +|++|+|++|..-...+..+..+ ++
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 4566666666677777777789999999986 44443 4555677 89999999975443334444443 99
Q ss_pred cceEEecCCCCCcccCCC-------CCCCCcceEEEccCcCcccCCC-----CCC-CCCcceEeeccCCCcc----ccCC
Q 039990 1006 LHRRSIQGCHNLVSLPED-------ALPSNVVDVSIEDCDKLKAPLP-----TGK-LSSLQLLTLIECPGIV----FFPE 1068 (1217)
Q Consensus 1006 L~~L~l~~c~~l~~l~~~-------~~~~~L~~L~l~~~~~l~~~~~-----~~~-l~~L~~L~l~~c~~l~----~~~~ 1068 (1217)
|++|++++|. ++..+.. ..+++|++|++++|........ +.. .++|++|++++|..-. .++.
T Consensus 82 L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 160 (362)
T 3goz_A 82 VTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ 160 (362)
T ss_dssp CCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred ccEEECcCCc-CChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence 9999999976 5543311 2236999999999985444211 123 3699999999975321 2211
Q ss_pred C--CCCCCCCeEEecCCCCCccccc---cccccC-CcccceeeccCCCccc-----cccccccCCC-CCCcceEeecCCC
Q 039990 1069 E--GLSTNLTDLEISGDNIYKPLVK---WGFDKF-SSLRKHCINRCSDAVS-----FPEVEKGVIL-PTSLTLIRISDFP 1136 (1217)
Q Consensus 1069 ~--~~~~~L~~L~l~~~~~~~~~~~---~~~~~l-~~L~~L~l~~~~~l~~-----~~~~~~~~~~-~~~L~~L~l~~c~ 1136 (1217)
. ...++|++|++++|......+. ..+..+ ++|++|++++|. +.. ++. .+.. .++|++|++++ |
T Consensus 161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~---~l~~~~~~L~~L~Ls~-N 235 (362)
T 3goz_A 161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAELAY---IFSSIPNHVVSLNLCL-N 235 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHH---HHHHSCTTCCEEECCS-S
T ss_pred HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHHH---HHhcCCCCceEEECcC-C
Confidence 1 2235999999999987644332 123445 599999999976 333 333 2222 46999999999 6
Q ss_pred CCcccCc----cccCCcccccccccccccCccc--------CCCC-CCCCccceEeccCCc
Q 039990 1137 KLERLSS----KGFHYLLSLEQLKVSSCPNFTS--------FPEA-GFPSSLLFLDIQGCP 1184 (1217)
Q Consensus 1137 ~l~~l~~----~~~~~l~~L~~L~l~~c~~l~~--------lp~~-~~~~sL~~L~l~~c~ 1184 (1217)
.+...+. ..+..+++|++|++++| .+.. ++.. ..+++|+.|++++++
T Consensus 236 ~l~~~~~~~l~~~~~~l~~L~~L~L~~n-~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 236 CLHGPSLENLKLLKDSLKHLQTVYLDYD-IVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp CCCCCCHHHHHHTTTTTTTCSEEEEEHH-HHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred CCCcHHHHHHHHHHhcCCCccEEEeccC-CccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 7877653 23567899999999999 4322 2222 356789999999885
No 112
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.13 E-value=1.3e-10 Score=124.67 Aligned_cols=162 Identities=17% Similarity=0.184 Sum_probs=100.7
Q ss_pred ccEEeecCCCCCcccccccccccCcceEeeccCCCccccccccCCCCcccEEEEcCCCCCccccccCCCCCCcceEEecC
Q 039990 934 LKCIQIEDCSNFKVLTSECQLSVAVEELTIDSCSNIESIAERFHDDACLRSIRLSYCKNLKSLPKGLNNLSHLHRRSIQG 1013 (1217)
Q Consensus 934 L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~l~~ 1013 (1217)
+..++++++. +..++ .+..+++|+.|++++| .+..++ .+..+++|++|++++| .+..++. +..+++|+.|++++
T Consensus 21 l~~l~l~~~~-i~~~~-~~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 21 AVKQNLGKQS-VTDLV-SQKELSGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHTCSC-TTSEE-CHHHHTTCSEEECTTS-CCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEECCS
T ss_pred HHHHHhcCCC-ccccc-chhhcCcCcEEECcCC-Ccccch-HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEECCC
Confidence 4444454433 22233 3566778888888886 455666 4556888888888885 4666655 78888888888888
Q ss_pred CCCCcccCCCCCCCCcceEEEccCcCcccCCCCCCCCCcceEeeccCCCccccCCCCCCCCCCeEEecCCCCCccccccc
Q 039990 1014 CHNLVSLPEDALPSNVVDVSIEDCDKLKAPLPTGKLSSLQLLTLIECPGIVFFPEEGLSTNLTDLEISGDNIYKPLVKWG 1093 (1217)
Q Consensus 1014 c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 1093 (1217)
| .++.++.... ++|+.|++++|..... ..+..+++|++|++++|. +..++....+++|++|++++|..... ..
T Consensus 95 N-~l~~l~~~~~-~~L~~L~L~~N~l~~~-~~l~~l~~L~~L~Ls~N~-i~~~~~l~~l~~L~~L~L~~N~i~~~---~~ 167 (263)
T 1xeu_A 95 N-RLKNLNGIPS-ACLSRLFLDNNELRDT-DSLIHLKNLEILSIRNNK-LKSIVMLGFLSKLEVLDLHGNEITNT---GG 167 (263)
T ss_dssp S-CCSCCTTCCC-SSCCEEECCSSCCSBS-GGGTTCTTCCEEECTTSC-CCBCGGGGGCTTCCEEECTTSCCCBC---TT
T ss_pred C-ccCCcCcccc-CcccEEEccCCccCCC-hhhcCcccccEEECCCCc-CCCChHHccCCCCCEEECCCCcCcch---HH
Confidence 6 4666665333 6677777777654433 345666777777776653 34444334456666666666655543 14
Q ss_pred cccCCcccceeeccC
Q 039990 1094 FDKFSSLRKHCINRC 1108 (1217)
Q Consensus 1094 ~~~l~~L~~L~l~~~ 1108 (1217)
+..+++|+.|++++|
T Consensus 168 l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 168 LTRLKKVNWIDLTGQ 182 (263)
T ss_dssp STTCCCCCEEEEEEE
T ss_pred hccCCCCCEEeCCCC
Confidence 556666666666664
No 113
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.07 E-value=9.2e-10 Score=113.75 Aligned_cols=106 Identities=19% Similarity=0.308 Sum_probs=66.8
Q ss_pred CCCCccEEeecCCCCCcccccccccccCcceEeeccCCCcccccc-ccCCCCcccEEEEcCCCCCcccc-ccCCCCCCcc
Q 039990 930 LPVTLKCIQIEDCSNFKVLTSECQLSVAVEELTIDSCSNIESIAE-RFHDDACLRSIRLSYCKNLKSLP-KGLNNLSHLH 1007 (1217)
Q Consensus 930 ~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~L~~c~~l~~l~-~~l~~l~~L~ 1007 (1217)
.+++|+.|++++|......+..+..+++|++|++++|. ++.++. .+..+++|++|++++|. +..+| ..+..+++|+
T Consensus 26 ~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~ 103 (208)
T 2o6s_A 26 IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK-LQSLPNGVFNKLTSLTYLNLSTNQ-LQSLPNGVFDKLTQLK 103 (208)
T ss_dssp CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCC
T ss_pred CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCc-cCccChhhcCCCCCcCEEECCCCc-CCccCHhHhcCccCCC
Confidence 35578888888876554444556778888888888864 444444 34567888888888854 44444 3457788888
Q ss_pred eEEecCCCCCcccCCCCC--CCCcceEEEccCc
Q 039990 1008 RRSIQGCHNLVSLPEDAL--PSNVVDVSIEDCD 1038 (1217)
Q Consensus 1008 ~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~~~ 1038 (1217)
+|++++| .++.++...+ .++|+.|++++|.
T Consensus 104 ~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (208)
T 2o6s_A 104 ELALNTN-QLQSLPDGVFDKLTQLKDLRLYQNQ 135 (208)
T ss_dssp EEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEcCCC-cCcccCHhHhccCCcCCEEECCCCc
Confidence 8888875 4555554221 2344444444443
No 114
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.06 E-value=1.7e-09 Score=111.68 Aligned_cols=57 Identities=25% Similarity=0.317 Sum_probs=24.4
Q ss_pred cCcceEeeccCCCcccccc-ccCCCCcccEEEEcCCCCCccccc-cCCCCCCcceEEecCC
Q 039990 956 VAVEELTIDSCSNIESIAE-RFHDDACLRSIRLSYCKNLKSLPK-GLNNLSHLHRRSIQGC 1014 (1217)
Q Consensus 956 ~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~L~~c~~l~~l~~-~l~~l~~L~~L~l~~c 1014 (1217)
++|++|++++|.. ..++. .+..+++|++|++++|. +..+|. .+..+++|++|++++|
T Consensus 28 ~~l~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 28 AQTTYLDLETNSL-KSLPNGVFDELTSLTQLYLGGNK-LQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TTCSEEECCSSCC-CCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCcEEEcCCCcc-CcCChhhhcccccCcEEECCCCc-cCccChhhcCCCCCcCEEECCCC
Confidence 3455555555432 22222 23344555555555532 333322 2344455555555443
No 115
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.05 E-value=1.2e-09 Score=113.67 Aligned_cols=109 Identities=17% Similarity=0.210 Sum_probs=72.9
Q ss_pred CCCCCcceEeeccCCCccccCCC--CCCCCCCeEEecCCCCCccccccccccCCcccceeeccCCCccccccccccCCCC
Q 039990 1047 GKLSSLQLLTLIECPGIVFFPEE--GLSTNLTDLEISGDNIYKPLVKWGFDKFSSLRKHCINRCSDAVSFPEVEKGVILP 1124 (1217)
Q Consensus 1047 ~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 1124 (1217)
..+++|++|++++|. +..++.. ..+++|++|++++|......+ ..|..+++|++|++++|......+. .+..+
T Consensus 54 ~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~---~~~~l 128 (220)
T 2v70_A 54 KKLPQLRKINFSNNK-ITDIEEGAFEGASGVNEILLTSNRLENVQH-KMFKGLESLKTLMLRSNRITCVGND---SFIGL 128 (220)
T ss_dssp GGCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCCCCG-GGGTTCSSCCEEECTTSCCCCBCTT---SSTTC
T ss_pred ccCCCCCEEECCCCc-CCEECHHHhCCCCCCCEEECCCCccCccCH-hHhcCCcCCCEEECCCCcCCeECHh---HcCCC
Confidence 466777777777754 4444432 456777777777776654433 2577788888888887653333233 45567
Q ss_pred CCcceEeecCCCCCcccCccccCCccccccccccccc
Q 039990 1125 TSLTLIRISDFPKLERLSSKGFHYLLSLEQLKVSSCP 1161 (1217)
Q Consensus 1125 ~~L~~L~l~~c~~l~~l~~~~~~~l~~L~~L~l~~c~ 1161 (1217)
++|+.|++++ |.+..+++..+..+++|++|++++|+
T Consensus 129 ~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 129 SSVRLLSLYD-NQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp TTCSEEECTT-SCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred ccCCEEECCC-CcCCEECHHHhcCCCCCCEEEecCcC
Confidence 7888888887 67777755677778888888888774
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.05 E-value=2.1e-10 Score=122.99 Aligned_cols=81 Identities=22% Similarity=0.209 Sum_probs=54.7
Q ss_pred cCCCCcceEEEcCCCCcccccccccccccChhhhcccccCcEEecccccccccccccccccccccEEeecCCccccccCC
Q 039990 478 LPKCKKLRVLSLEKDNIAEVPISIGCLKCLPEAITSLFNLEILILSYCWCLLKLPSSIGNLVNLHHLDIEGADRLCELPL 557 (1217)
Q Consensus 478 ~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~ 557 (1217)
+..+++|++|++++|.++.+| .++.+.+|++|+|++| .+..+|. +.++++|++|++++| .+..+|.
T Consensus 37 ~~~l~~L~~L~l~~n~i~~l~-----------~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L~~N-~l~~l~~ 102 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQSLA-----------GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSVNRN-RLKNLNG 102 (263)
T ss_dssp HHHHTTCSEEECTTSCCCCCT-----------TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEECCSS-CCSCCTT
T ss_pred hhhcCcCcEEECcCCCcccch-----------HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEECCCC-ccCCcCc
Confidence 456677778888877777654 3667777888888777 6777776 777788888888777 6666654
Q ss_pred CCccCcccccccccccc
Q 039990 558 GMKELKCLRTLTDFINV 574 (1217)
Q Consensus 558 ~i~~L~~L~~L~~~~n~ 574 (1217)
... .+|++|++..|.
T Consensus 103 ~~~--~~L~~L~L~~N~ 117 (263)
T 1xeu_A 103 IPS--ACLSRLFLDNNE 117 (263)
T ss_dssp CCC--SSCCEEECCSSC
T ss_pred ccc--CcccEEEccCCc
Confidence 222 555555554443
No 117
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.05 E-value=1.4e-09 Score=113.14 Aligned_cols=149 Identities=17% Similarity=0.228 Sum_probs=79.1
Q ss_pred cEEEEcCCCCCccccccCCCCCCcceEEecCCCCCcccCCCCCCCCcceEEEccCcCcccCCCCCCCCCcceEeeccCCC
Q 039990 983 RSIRLSYCKNLKSLPKGLNNLSHLHRRSIQGCHNLVSLPEDALPSNVVDVSIEDCDKLKAPLPTGKLSSLQLLTLIECPG 1062 (1217)
Q Consensus 983 ~~L~L~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~c~~ 1062 (1217)
+.+++++ +.+..+|..+. ++|+.|++++| .++.++.. .+..+++|++|++++|..
T Consensus 14 ~~v~c~~-~~l~~iP~~l~--~~l~~L~l~~n-~i~~i~~~---------------------~~~~l~~L~~L~Ls~N~i 68 (220)
T 2v9t_B 14 NIVDCRG-KGLTEIPTNLP--ETITEIRLEQN-TIKVIPPG---------------------AFSPYKKLRRIDLSNNQI 68 (220)
T ss_dssp TEEECTT-SCCSSCCSSCC--TTCCEEECCSS-CCCEECTT---------------------SSTTCTTCCEEECCSSCC
T ss_pred CEEEcCC-CCcCcCCCccC--cCCCEEECCCC-cCCCcCHh---------------------HhhCCCCCCEEECCCCcC
Confidence 3455555 34555555442 45666666654 34444432 234556666666666432
Q ss_pred ccccCCC-CCCCCCCeEEecCCCCCccccccccccCCcccceeeccCCCccccccccccCCCCCCcceEeecCCCCCccc
Q 039990 1063 IVFFPEE-GLSTNLTDLEISGDNIYKPLVKWGFDKFSSLRKHCINRCSDAVSFPEVEKGVILPTSLTLIRISDFPKLERL 1141 (1217)
Q Consensus 1063 l~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l 1141 (1217)
-...+.. ..+++|++|++++|... .++...|..+++|++|++++|. +..++. ..+..+++|+.|++++ |.++.+
T Consensus 69 ~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~N~-l~~~~~--~~~~~l~~L~~L~L~~-N~l~~~ 143 (220)
T 2v9t_B 69 SELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANK-INCLRV--DAFQDLHNLNLLSLYD-NKLQTI 143 (220)
T ss_dssp CEECTTTTTTCSSCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC-CCCCCT--TTTTTCTTCCEEECCS-SCCSCC
T ss_pred CCcCHHHhhCCcCCCEEECCCCcCC-ccCHhHccCCCCCCEEECCCCC-CCEeCH--HHcCCCCCCCEEECCC-CcCCEE
Confidence 2222222 33555666666665444 2333345666666666666653 333322 2445556666666666 566666
Q ss_pred CccccCCccccccccccccc
Q 039990 1142 SSKGFHYLLSLEQLKVSSCP 1161 (1217)
Q Consensus 1142 ~~~~~~~l~~L~~L~l~~c~ 1161 (1217)
+...+..+++|++|++++|+
T Consensus 144 ~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 144 AKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CTTTTTTCTTCCEEECCSSC
T ss_pred CHHHHhCCCCCCEEEeCCCC
Confidence 65556666666666666663
No 118
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.05 E-value=9.3e-10 Score=124.51 Aligned_cols=123 Identities=16% Similarity=0.173 Sum_probs=57.1
Q ss_pred cEEeecCCCCCcccccccccccCcceEeeccCCCccccccc-cC-CCCcccEEEEcCCCCCccc-cccCCCCCCcceEEe
Q 039990 935 KCIQIEDCSNFKVLTSECQLSVAVEELTIDSCSNIESIAER-FH-DDACLRSIRLSYCKNLKSL-PKGLNNLSHLHRRSI 1011 (1217)
Q Consensus 935 ~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~-~~-~l~~L~~L~L~~c~~l~~l-~~~l~~l~~L~~L~l 1011 (1217)
+.++++++ .+..+|..+ ...++.|++++|. +..++.. +. .+++|++|+|++|. +..+ +..+..+++|+.|++
T Consensus 21 ~~l~c~~~-~l~~iP~~~--~~~l~~L~Ls~N~-l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~L 95 (361)
T 2xot_A 21 NILSCSKQ-QLPNVPQSL--PSYTALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDL 95 (361)
T ss_dssp TEEECCSS-CCSSCCSSC--CTTCSEEECCSSC-CCEECTTSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEEC
T ss_pred CEEEeCCC-CcCccCccC--CCCCCEEECCCCC-CCccChhhhhhcccccCEEECCCCc-CCccChhhccCCCCCCEEEC
Confidence 34555543 344444432 2345566666643 3333322 22 45556666665533 3333 234555555555555
Q ss_pred cCCCCCcccCCCCCCCCcceEEEccCcCcccCCCCCCCCCcceEeeccCCCccccCCC--CCCCCCCeEEecCCCC
Q 039990 1012 QGCHNLVSLPEDALPSNVVDVSIEDCDKLKAPLPTGKLSSLQLLTLIECPGIVFFPEE--GLSTNLTDLEISGDNI 1085 (1217)
Q Consensus 1012 ~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~~~~ 1085 (1217)
++|. ++.++. ..+..+++|++|++++|.. ..++.. ..+++|++|++++|..
T Consensus 96 s~N~-l~~~~~---------------------~~~~~l~~L~~L~L~~N~i-~~~~~~~~~~l~~L~~L~L~~N~l 148 (361)
T 2xot_A 96 SSNH-LHTLDE---------------------FLFSDLQALEVLLLYNNHI-VVVDRNAFEDMAQLQKLYLSQNQI 148 (361)
T ss_dssp CSSC-CCEECT---------------------TTTTTCTTCCEEECCSSCC-CEECTTTTTTCTTCCEEECCSSCC
T ss_pred CCCc-CCcCCH---------------------HHhCCCcCCCEEECCCCcc-cEECHHHhCCcccCCEEECCCCcC
Confidence 5532 343332 1224566666666666432 222211 2344555555555443
No 119
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.05 E-value=1.3e-08 Score=116.78 Aligned_cols=283 Identities=13% Similarity=0.029 Sum_probs=168.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhcc-c----cCCC--CCeEEEEeCCcc-cHH
Q 039990 79 PAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDK-L----TDDF--KPKAWVCVSDDF-DIL 150 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~-~----~~~F--~~~~wv~~~~~~-~~~ 150 (1217)
..++||+++++++.+++.....+ ...+.|.|+|++|+|||++|+++++.. . ...+ ...+|+.+.... +..
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~--~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 97 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKN--EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQ 97 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTT--CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcC--CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHH
Confidence 67999999999999887642111 334689999999999999999998763 1 1122 346677777666 788
Q ss_pred HHHHHHHHHhhcCCCC--CCChhHHHHHHHHHHHhc-----CcCHHHHH-----Hh-hcccCCCCCCcEEEEEcCchHHH
Q 039990 151 RISKAILESITRSSCG--LTDLNSVQLKLKEAVFKK-----NKSYELWQ-----AL-KSPFMAGAPGSRIIVTTRSMDVA 217 (1217)
Q Consensus 151 ~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~l~~~-----~~~~~~~~-----~l-~~~~~~~~~gs~ilvTtR~~~v~ 217 (1217)
.++..++.++...... ..........+...+... .|+.+... .+ ...+.....+..||+||+.....
T Consensus 98 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~~~ 177 (384)
T 2qby_B 98 AVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDINVR 177 (384)
T ss_dssp HHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTTTT
T ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCchH
Confidence 8888888888433221 223345555666655543 33333221 11 11111111678899999875321
Q ss_pred ----Hhh--CCCceEeccCCChHHHHHHHHHHHhCC-CCCCCCCchhhHHHHHHHhcc---CCch-hHHHHHHH--hhc-
Q 039990 218 ----LKM--GSGKNYELKHLSDDDCWSVFLNHAFEG-IDTGTQGNFESTRQRVVAKCK---GLPL-AARALGGL--LRS- 283 (1217)
Q Consensus 218 ----~~~--~~~~~~~l~~l~~~~~~~lf~~~~~~~-~~~~~~~~~~~~~~~i~~~~~---g~PL-ai~~~~~~--l~~- 283 (1217)
... .....+++++++.++..+++...+... ... .-..+..+.|++.++ |.|- |+..+... +..
T Consensus 178 ~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~ 254 (384)
T 2qby_B 178 DYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKG---TYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLASG 254 (384)
T ss_dssp TTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTT---SCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTS
T ss_pred hhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccC---CcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcC
Confidence 111 112389999999999999999986321 111 112356778888888 8776 44333322 221
Q ss_pred --CCChhHHHHHHhhccCCCCCCCCchHHHHHhhcCCChhHHHHHHHhhcCCCCcccChHHHHHHHHHhCCccccccccc
Q 039990 284 --KQRVDEWRAILNSKIWDLEDEIEIPSVLKLSYHHLPSHLKRCFAYCAILPKDYEFQEEELVLLWIAEGFIQQSKYSKQ 361 (1217)
Q Consensus 284 --~~~~~~w~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~f~~~~~fp~~~~i~~~~li~~w~~~g~i~~~~~~~~ 361 (1217)
.-+.+.+..++... ....+..+++.|+++.|..+..++....+-++. ......--..| .. ..
T Consensus 255 ~~~i~~~~v~~~~~~~---------~~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~-~~~~~~~~~~g-~~-----~~ 318 (384)
T 2qby_B 255 GGIIRKEHVDKAIVDY---------EQERLIEAVKALPFHYKLALRSLIESEDVMSAH-KMYTDLCNKFK-QK-----PL 318 (384)
T ss_dssp SSCCCHHHHHHHHHHH---------HHHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHH-HHHHHHHHHTT-CC-----CC
T ss_pred CCccCHHHHHHHHHHH---------hcchHHHHHHcCCHHHHHHHHHHHHhcccChHH-HHHHHHHHHcC-CC-----CC
Confidence 22356677666542 124567788999999988887777611101111 11111111122 11 11
Q ss_pred HHHHHHHHHHHHHhccCCccc
Q 039990 362 LEDWGSEYFHDLLSRSMFQKS 382 (1217)
Q Consensus 362 ~~~~~~~~l~~L~~~sl~~~~ 382 (1217)
......++++.|.++++++..
T Consensus 319 ~~~~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 319 SYRRFSDIISELDMFGIVKIR 339 (384)
T ss_dssp CHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHHHHHHhCCCEEEE
Confidence 235567889999999999863
No 120
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.05 E-value=1.5e-09 Score=113.74 Aligned_cols=147 Identities=21% Similarity=0.243 Sum_probs=98.3
Q ss_pred cceEEecCCCCCcccCCCCCCCCcceEEEccCcCccc-CCCCCCCCCcceEeeccCCCccccCCC--CCCCCCCeEEecC
Q 039990 1006 LHRRSIQGCHNLVSLPEDALPSNVVDVSIEDCDKLKA-PLPTGKLSSLQLLTLIECPGIVFFPEE--GLSTNLTDLEISG 1082 (1217)
Q Consensus 1006 L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~-~~~~~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~ 1082 (1217)
.+.++.++ ..++.+|. .++++|+.|++++|..... +..+..+++|++|++++|. +..++.. ..+++|++|++++
T Consensus 21 ~~~v~c~~-~~l~~ip~-~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRS-KRHASVPA-GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTT-SCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccC-CCcCccCC-CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECCC
Confidence 45677776 46788886 3557888899888876655 2234678888888888864 4555543 3467777777777
Q ss_pred CCCCccccccccccCCcccceeeccCCCccccccccccCCCCCCcceEeecCCCCCcccCccccCCccccccccccccc
Q 039990 1083 DNIYKPLVKWGFDKFSSLRKHCINRCSDAVSFPEVEKGVILPTSLTLIRISDFPKLERLSSKGFHYLLSLEQLKVSSCP 1161 (1217)
Q Consensus 1083 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~L~~L~l~~c~ 1161 (1217)
|.... ++...|..+++|++|++++|. +..+|. .+..+++|+.|++++ |++..++...+..+++|+.|++++|+
T Consensus 98 N~l~~-l~~~~~~~l~~L~~L~Ls~N~-l~~lp~---~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 98 NQLTV-LPSAVFDRLVHLKELFMCCNK-LTELPR---GIERLTHLTHLALDQ-NQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp SCCCC-CCTTTTTTCTTCCEEECCSSC-CCSCCT---TGGGCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred CcCCc-cChhHhCcchhhCeEeccCCc-ccccCc---ccccCCCCCEEECCC-CcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 75543 333346677777777777753 445554 344567777777777 56777765556677777777777774
No 121
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.04 E-value=6.4e-10 Score=125.83 Aligned_cols=168 Identities=17% Similarity=0.152 Sum_probs=90.3
Q ss_pred cEEEEcCCCCCccccccCCCCCCcceEEecCCCCCcccCCCCC---CCCcceEEEccCcCcccCC-CCCCCCCcceEeec
Q 039990 983 RSIRLSYCKNLKSLPKGLNNLSHLHRRSIQGCHNLVSLPEDAL---PSNVVDVSIEDCDKLKAPL-PTGKLSSLQLLTLI 1058 (1217)
Q Consensus 983 ~~L~L~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~---~~~L~~L~l~~~~~l~~~~-~~~~l~~L~~L~l~ 1058 (1217)
+.+++++ +.+..+|..+ .+.++.|++++| .++.++...+ .++|+.|++++|.....+. .+..+++|++|+++
T Consensus 21 ~~l~c~~-~~l~~iP~~~--~~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSK-QQLPNVPQSL--PSYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCS-SCCSSCCSSC--CTTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCC-CCcCccCccC--CCCCCEEECCCC-CCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 5677776 4577777655 345788888885 5666665332 2566666666665444321 24556666666666
Q ss_pred cCCCccccCCC--CCCCCCCeEEecCCCCCccccccccccCCcccceeeccCCCccccccccccC---CCCCCcceEeec
Q 039990 1059 ECPGIVFFPEE--GLSTNLTDLEISGDNIYKPLVKWGFDKFSSLRKHCINRCSDAVSFPEVEKGV---ILPTSLTLIRIS 1133 (1217)
Q Consensus 1059 ~c~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~---~~~~~L~~L~l~ 1133 (1217)
+|. +..++.. ..+++|++|++++|......+. .|..+++|++|+|++| .+..+|. ..+ ..+++|+.|+++
T Consensus 97 ~N~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~-~~~~l~~L~~L~L~~N-~l~~l~~--~~~~~~~~l~~L~~L~L~ 171 (361)
T 2xot_A 97 SNH-LHTLDEFLFSDLQALEVLLLYNNHIVVVDRN-AFEDMAQLQKLYLSQN-QISRFPV--ELIKDGNKLPKLMLLDLS 171 (361)
T ss_dssp SSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSS-CCCSCCG--GGTC----CTTCCEEECC
T ss_pred CCc-CCcCCHHHhCCCcCCCEEECCCCcccEECHH-HhCCcccCCEEECCCC-cCCeeCH--HHhcCcccCCcCCEEECC
Confidence 643 3333332 3355666666666554433222 4555566666666653 3334443 111 234555666665
Q ss_pred CCCCCcccCccccCCccc--ccccccccc
Q 039990 1134 DFPKLERLSSKGFHYLLS--LEQLKVSSC 1160 (1217)
Q Consensus 1134 ~c~~l~~l~~~~~~~l~~--L~~L~l~~c 1160 (1217)
+ |.+..+|...+..++. |+.|++++|
T Consensus 172 ~-N~l~~l~~~~~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 172 S-NKLKKLPLTDLQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp S-SCCCCCCHHHHHHSCHHHHTTEECCSS
T ss_pred C-CCCCccCHHHhhhccHhhcceEEecCC
Confidence 5 4555555444444444 255555555
No 122
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.04 E-value=2.9e-10 Score=126.99 Aligned_cols=255 Identities=13% Similarity=0.046 Sum_probs=142.0
Q ss_pred cccccceEeccCCCCcccccCCCCCCCccEEeecCCCCC--cccccccccccCcceEeeccCCCccccc-cccCC-----
Q 039990 907 YLDLESLSVQSCPSLTRLWSSGRLPVTLKCIQIEDCSNF--KVLTSECQLSVAVEELTIDSCSNIESIA-ERFHD----- 978 (1217)
Q Consensus 907 ~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l--~~~~~~~~~l~~L~~L~l~~~~~l~~l~-~~~~~----- 978 (1217)
.+++++|.+++.-.-..+......+++|+.|++++|... .... ..++.+..+.+..+ .+| ..+..
T Consensus 24 ~~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~---~~~~~~~~~~~~~~----~I~~~aF~~~~~~~ 96 (329)
T 3sb4_A 24 ANSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKA---GTYPNGKFYIYMAN----FVPAYAFSNVVNGV 96 (329)
T ss_dssp HHHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCEEESS---SSSGGGCCEEECTT----EECTTTTEEEETTE
T ss_pred hCceeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEecCcc---cccccccccccccc----ccCHHHhccccccc
Confidence 456888888763221122111122567999999887654 1111 11112222333222 222 22334
Q ss_pred ---CCcccEEEEcCCCCCcccc-ccCCCCCCcceEEecCCCCCcccCCCCCCCCcceEEEccCcCcc-----c--CCCCC
Q 039990 979 ---DACLRSIRLSYCKNLKSLP-KGLNNLSHLHRRSIQGCHNLVSLPEDALPSNVVDVSIEDCDKLK-----A--PLPTG 1047 (1217)
Q Consensus 979 ---l~~L~~L~L~~c~~l~~l~-~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~-----~--~~~~~ 1047 (1217)
+++|+.|.|.+ .++.++ .+|.+|++|+.|++.++ .++.++...+...+....+....... . ...+.
T Consensus 97 ~~g~~~L~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~~n-~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~ 173 (329)
T 3sb4_A 97 TKGKQTLEKVILSE--KIKNIEDAAFKGCDNLKICQIRKK-TAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFI 173 (329)
T ss_dssp EEECTTCCC-CBCT--TCCEECTTTTTTCTTCCEEEBCCS-SCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEE
T ss_pred ccccCCCcEEECCc--cccchhHHHhhcCcccceEEcCCC-CccccchhhhcCCCceEEecCcchhhhhccccccccccc
Confidence 67777777766 455553 34677777777777764 34555554444333333332211000 0 01112
Q ss_pred CCCCc--------------------------ceEeeccCCCccccCCC-CCCCCCCeEEecCCCCCccccccccccCCcc
Q 039990 1048 KLSSL--------------------------QLLTLIECPGIVFFPEE-GLSTNLTDLEISGDNIYKPLVKWGFDKFSSL 1100 (1217)
Q Consensus 1048 ~l~~L--------------------------~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L 1100 (1217)
++.+| ..+.+.+.-....+... ..+++|+++++++|. ...++..+|.++++|
T Consensus 174 ~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~-i~~I~~~aF~~~~~L 252 (329)
T 3sb4_A 174 EGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTN-ATTIPDFTFAQKKYL 252 (329)
T ss_dssp ESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBC-CCEECTTTTTTCTTC
T ss_pred cccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCC-cceecHhhhhCCCCC
Confidence 22333 33333321100000000 126788888888765 445666678888888
Q ss_pred cceeeccCCCccccccccccCCCCCCcc-eEeecCCCCCcccCccccCCcccccccccccccCcccCCCCC--CCCccce
Q 039990 1101 RKHCINRCSDAVSFPEVEKGVILPTSLT-LIRISDFPKLERLSSKGFHYLLSLEQLKVSSCPNFTSFPEAG--FPSSLLF 1177 (1217)
Q Consensus 1101 ~~L~l~~~~~l~~~~~~~~~~~~~~~L~-~L~l~~c~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~lp~~~--~~~sL~~ 1177 (1217)
+++++.++ +..++. ..|..+++|+ .+++.+ .++.|+...|.++++|+.+++.++ .++.++... .+++|+.
T Consensus 253 ~~l~l~~n--i~~I~~--~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n-~i~~I~~~aF~~~~~L~~ 325 (329)
T 3sb4_A 253 LKIKLPHN--LKTIGQ--RVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGD-KITTLGDELFGNGVPSKL 325 (329)
T ss_dssp CEEECCTT--CCEECT--TTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSS-CCCEECTTTTCTTCCCCE
T ss_pred CEEECCcc--cceehH--HHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCC-ccCccchhhhcCCcchhh
Confidence 88888874 777765 6788888888 888886 788888778888888888888777 788887653 3566666
Q ss_pred Ee
Q 039990 1178 LD 1179 (1217)
Q Consensus 1178 L~ 1179 (1217)
++
T Consensus 326 ly 327 (329)
T 3sb4_A 326 IY 327 (329)
T ss_dssp EE
T ss_pred hc
Confidence 54
No 123
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.04 E-value=8.9e-09 Score=118.34 Aligned_cols=282 Identities=12% Similarity=0.020 Sum_probs=169.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhccccC-----CC-CCeEEEEeCCcccHHHH
Q 039990 79 PAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTD-----DF-KPKAWVCVSDDFDILRI 152 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-----~F-~~~~wv~~~~~~~~~~~ 152 (1217)
..++||+++++++.+++...-.. ...+.+.|+|++|+|||++|+++++.. .. .. ...+|+.+....+...+
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~--~~~~~vll~G~~G~GKT~l~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~ 95 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRG--EKPSNALLYGLTGTGKTAVARLVLRRL-EARASSLGVLVKPIYVNARHRETPYRV 95 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSS--CCCCCEEECBCTTSSHHHHHHHHHHHH-HHHHHHHTCCEEEEEEETTTSCSHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcC--CCCCcEEEECCCCCCHHHHHHHHHHHH-HHHHhccCCCeEEEEEECCcCCCHHHH
Confidence 67999999999999988543111 334678999999999999999998763 11 11 24567887777788899
Q ss_pred HHHHHHHhhcCCCC-CCChhHHHHHHHHHHHhc-------CcCHHHH-------HHh---hcccCCC--CCCcEEEEEcC
Q 039990 153 SKAILESITRSSCG-LTDLNSVQLKLKEAVFKK-------NKSYELW-------QAL---KSPFMAG--APGSRIIVTTR 212 (1217)
Q Consensus 153 ~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l~~~-------~~~~~~~-------~~l---~~~~~~~--~~gs~ilvTtR 212 (1217)
+..++.+++..... .....+....+...+... .|+.+.. +.+ ....... ..+..+|.||+
T Consensus 96 ~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~ 175 (387)
T 2v1u_A 96 ASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITN 175 (387)
T ss_dssp HHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECS
T ss_pred HHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEEC
Confidence 99999998654332 223455555666665322 2222111 122 2211111 44667888887
Q ss_pred chHH--------HHhhCCCceEeccCCChHHHHHHHHHHHhCC-CCCCCCCchhhHHHHHHHhcc---CCch-hHHHHHH
Q 039990 213 SMDV--------ALKMGSGKNYELKHLSDDDCWSVFLNHAFEG-IDTGTQGNFESTRQRVVAKCK---GLPL-AARALGG 279 (1217)
Q Consensus 213 ~~~v--------~~~~~~~~~~~l~~l~~~~~~~lf~~~~~~~-~~~~~~~~~~~~~~~i~~~~~---g~PL-ai~~~~~ 279 (1217)
.... ...+ ....+.+++++.++..+++...+... .... -..+..+.+++.++ |.|- |+.++..
T Consensus 176 ~~~~~~~l~~~l~~r~-~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~G~~r~~~~~l~~ 251 (387)
T 2v1u_A 176 SLGFVENLEPRVKSSL-GEVELVFPPYTAPQLRDILETRAEEAFNPGV---LDPDVVPLCAALAAREHGDARRALDLLRV 251 (387)
T ss_dssp CSTTSSSSCHHHHTTT-TSEECCBCCCCHHHHHHHHHHHHHHHBCTTT---BCSSHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred CCchHhhhCHHHHhcC-CCeEEeeCCCCHHHHHHHHHHHHHhhccCCC---CCHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 6532 2111 11478999999999999999875320 1111 12346778888888 9993 3333222
Q ss_pred Hh--h---c--CCChhHHHHHHhhccCCCCCCCCchHHHHHhhcCCChhHHHHHHHhh-cCCCCcccChHHHHHHHH---
Q 039990 280 LL--R---S--KQRVDEWRAILNSKIWDLEDEIEIPSVLKLSYHHLPSHLKRCFAYCA-ILPKDYEFQEEELVLLWI--- 348 (1217)
Q Consensus 280 ~l--~---~--~~~~~~w~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~f~~~~-~fp~~~~i~~~~li~~w~--- 348 (1217)
.. . + .-+.+.+..++... ....+.-++..|+++.+..+..++ .+.....+...++.+...
T Consensus 252 a~~~a~~~~~~~i~~~~v~~a~~~~---------~~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~ 322 (387)
T 2v1u_A 252 AGEIAERRREERVRREHVYSARAEI---------ERDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELT 322 (387)
T ss_dssp HHHHHHHTTCSCBCHHHHHHHHHHH---------HHHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCcCHHHHHHHHHHH---------hhchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Confidence 21 1 1 12355666665542 123466678999999988887776 443223444454433321
Q ss_pred -HhCCcccccccccHHHHHHHHHHHHHhccCCccc
Q 039990 349 -AEGFIQQSKYSKQLEDWGSEYFHDLLSRSMFQKS 382 (1217)
Q Consensus 349 -~~g~i~~~~~~~~~~~~~~~~l~~L~~~sl~~~~ 382 (1217)
..| .. ......+.++++.|...|+++..
T Consensus 323 ~~~~-~~-----~~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 323 STLG-LE-----HVTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp HHTT-CC-----CCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HhcC-CC-----CCCHHHHHHHHHHHHhCCCeEEE
Confidence 122 11 11235677889999999999873
No 124
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.03 E-value=1.7e-09 Score=112.44 Aligned_cols=128 Identities=16% Similarity=0.220 Sum_probs=103.4
Q ss_pred CCcceEeeccCCCccccCCC--CCCCCCCeEEecCCCCCccccccccccCCcccceeeccCCCccccccccccCCCCCCc
Q 039990 1050 SSLQLLTLIECPGIVFFPEE--GLSTNLTDLEISGDNIYKPLVKWGFDKFSSLRKHCINRCSDAVSFPEVEKGVILPTSL 1127 (1217)
Q Consensus 1050 ~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L 1127 (1217)
++|++|++++|. +..++.. ..+++|++|++++|......+. .|.++++|++|+|++| .+..+|. ..|..+++|
T Consensus 32 ~~l~~L~l~~n~-i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~-~~~~l~~L~~L~Ls~N-~l~~l~~--~~f~~l~~L 106 (220)
T 2v9t_B 32 ETITEIRLEQNT-IKVIPPGAFSPYKKLRRIDLSNNQISELAPD-AFQGLRSLNSLVLYGN-KITELPK--SLFEGLFSL 106 (220)
T ss_dssp TTCCEEECCSSC-CCEECTTSSTTCTTCCEEECCSSCCCEECTT-TTTTCSSCCEEECCSS-CCCCCCT--TTTTTCTTC
T ss_pred cCCCEEECCCCc-CCCcCHhHhhCCCCCCEEECCCCcCCCcCHH-HhhCCcCCCEEECCCC-cCCccCH--hHccCCCCC
Confidence 567777777753 4444433 4578999999999987755444 7899999999999996 4666765 456778999
Q ss_pred ceEeecCCCCCcccCccccCCcccccccccccccCcccCCCC--CCCCccceEeccCCc
Q 039990 1128 TLIRISDFPKLERLSSKGFHYLLSLEQLKVSSCPNFTSFPEA--GFPSSLLFLDIQGCP 1184 (1217)
Q Consensus 1128 ~~L~l~~c~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~lp~~--~~~~sL~~L~l~~c~ 1184 (1217)
+.|++++ |.+..++...+.++++|++|++++| .++.++.. ..+++|+.|+++++|
T Consensus 107 ~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 107 QLLLLNA-NKINCLRVDAFQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEECCC-CCCCEeCHHHcCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCCCC
Confidence 9999999 7899998788999999999999999 78888764 447899999999886
No 125
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.02 E-value=2.2e-09 Score=112.49 Aligned_cols=144 Identities=15% Similarity=0.211 Sum_probs=92.3
Q ss_pred cccEEEEcCCCCCccccccCCCCCCcceEEecCCCCCcccCCCC--CCCCcceEEEccCcCcccCCC-CCCCCCcceEee
Q 039990 981 CLRSIRLSYCKNLKSLPKGLNNLSHLHRRSIQGCHNLVSLPEDA--LPSNVVDVSIEDCDKLKAPLP-TGKLSSLQLLTL 1057 (1217)
Q Consensus 981 ~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~--~~~~L~~L~l~~~~~l~~~~~-~~~l~~L~~L~l 1057 (1217)
+.+.++.++ ..+..+|.++. ++|+.|++++|. ++.++... ..++|+.|++++|.....+.. +..+++|++|++
T Consensus 20 s~~~v~c~~-~~l~~ip~~~~--~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L 95 (229)
T 3e6j_A 20 SGTTVDCRS-KRHASVPAGIP--TNAQILYLHDNQ-ITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL 95 (229)
T ss_dssp ETTEEECTT-SCCSSCCSCCC--TTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred eCCEeEccC-CCcCccCCCCC--CCCCEEEcCCCc-cCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEEC
Confidence 345666666 45677776553 778888888754 55553322 235788888887775444322 367778888888
Q ss_pred ccCCCccccCCC--CCCCCCCeEEecCCCCCccccccccccCCcccceeeccCCCccccccccccCCCCCCcceEeecC
Q 039990 1058 IECPGIVFFPEE--GLSTNLTDLEISGDNIYKPLVKWGFDKFSSLRKHCINRCSDAVSFPEVEKGVILPTSLTLIRISD 1134 (1217)
Q Consensus 1058 ~~c~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~ 1134 (1217)
++| .+..++.. ..+++|++|++++|... .++. .+..+++|++|++++| .+..++. ..+..+++|+.|++++
T Consensus 96 s~N-~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~-~~~~l~~L~~L~L~~N-~l~~~~~--~~~~~l~~L~~L~l~~ 168 (229)
T 3e6j_A 96 GTN-QLTVLPSAVFDRLVHLKELFMCCNKLT-ELPR-GIERLTHLTHLALDQN-QLKSIPH--GAFDRLSSLTHAYLFG 168 (229)
T ss_dssp CSS-CCCCCCTTTTTTCTTCCEEECCSSCCC-SCCT-TGGGCTTCSEEECCSS-CCCCCCT--TTTTTCTTCCEEECTT
T ss_pred CCC-cCCccChhHhCcchhhCeEeccCCccc-ccCc-ccccCCCCCEEECCCC-cCCccCH--HHHhCCCCCCEEEeeC
Confidence 775 44455443 45677888888877665 3443 4577788888888875 4555554 3456677788888877
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.00 E-value=1.3e-09 Score=108.08 Aligned_cols=116 Identities=16% Similarity=0.187 Sum_probs=79.7
Q ss_pred CCCCCcceEeeccCCCccccCCCCCCCCCCeEEecCCCCCccccccccccCCcccceeeccCCCccccccccccCCCCCC
Q 039990 1047 GKLSSLQLLTLIECPGIVFFPEEGLSTNLTDLEISGDNIYKPLVKWGFDKFSSLRKHCINRCSDAVSFPEVEKGVILPTS 1126 (1217)
Q Consensus 1047 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 1126 (1217)
..+++|++|++++|. +..++....+++|++|++++|.....++. .+..+++|++|++++| .+..++. ...+..+++
T Consensus 46 ~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N-~l~~~~~-~~~l~~l~~ 121 (168)
T 2ell_A 46 AEFVNLEFLSLINVG-LISVSNLPKLPKLKKLELSENRIFGGLDM-LAEKLPNLTHLNLSGN-KLKDIST-LEPLKKLEC 121 (168)
T ss_dssp GGGGGCCEEEEESSC-CCCCSSCCCCSSCCEEEEESCCCCSCCCH-HHHHCTTCCEEECBSS-SCCSSGG-GGGGSSCSC
T ss_pred HhCCCCCEEeCcCCC-CCChhhhccCCCCCEEECcCCcCchHHHH-HHhhCCCCCEEeccCC-ccCcchh-HHHHhcCCC
Confidence 567777788877765 44443335577788888888776654443 4566888888888886 4555442 124556788
Q ss_pred cceEeecCCCCCcccCc---cccCCcccccccccccccCcccCCC
Q 039990 1127 LTLIRISDFPKLERLSS---KGFHYLLSLEQLKVSSCPNFTSFPE 1168 (1217)
Q Consensus 1127 L~~L~l~~c~~l~~l~~---~~~~~l~~L~~L~l~~c~~l~~lp~ 1168 (1217)
|++|++++ +.+..+|. ..+..+++|++|++++| .+..+|.
T Consensus 122 L~~L~l~~-N~l~~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~ 164 (168)
T 2ell_A 122 LKSLDLFN-CEVTNLNDYRESVFKLLPQLTYLDGYDR-EDQEAPD 164 (168)
T ss_dssp CCEEECCS-SGGGTSTTHHHHHHTTCSSCCEETTEET-TSCBCCS
T ss_pred CCEEEeeC-CcCcchHHHHHHHHHhCccCcEecCCCC-Chhhccc
Confidence 88888888 57777774 36778888888888888 5666664
No 127
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.00 E-value=2.6e-10 Score=127.40 Aligned_cols=237 Identities=11% Similarity=0.061 Sum_probs=151.2
Q ss_pred cccccceEeccCCCCcccccCCCCCCCccEEeecCCCCCccccccccc--------ccCcceEeeccCCCcccccc-ccC
Q 039990 907 YLDLESLSVQSCPSLTRLWSSGRLPVTLKCIQIEDCSNFKVLTSECQL--------SVAVEELTIDSCSNIESIAE-RFH 977 (1217)
Q Consensus 907 ~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~--------l~~L~~L~l~~~~~l~~l~~-~~~ 977 (1217)
+++|+.|+++++.- ..+.......+.+..+.+..+ ......|.+ +++|+.|++.+ .++.++. .+.
T Consensus 48 l~~L~~LdLs~n~i-~~~~~~~~~~~~~~~~~~~~~---~I~~~aF~~~~~~~~~g~~~L~~l~L~~--~i~~I~~~aF~ 121 (329)
T 3sb4_A 48 FPSLKVLDISNAEI-KMYSGKAGTYPNGKFYIYMAN---FVPAYAFSNVVNGVTKGKQTLEKVILSE--KIKNIEDAAFK 121 (329)
T ss_dssp CTTCCEEEEEEEEE-CCEEESSSSSGGGCCEEECTT---EECTTTTEEEETTEEEECTTCCC-CBCT--TCCEECTTTTT
T ss_pred hccCeEEecCccee-EEecCcccccccccccccccc---ccCHHHhcccccccccccCCCcEEECCc--cccchhHHHhh
Confidence 56699999987643 211111111222333444333 222334556 89999999988 5666654 466
Q ss_pred CCCcccEEEEcCCCCCccccccCCCCCCcceEEecCCC---CCcccCCCC----------------------------CC
Q 039990 978 DDACLRSIRLSYCKNLKSLPKGLNNLSHLHRRSIQGCH---NLVSLPEDA----------------------------LP 1026 (1217)
Q Consensus 978 ~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~l~~c~---~l~~l~~~~----------------------------~~ 1026 (1217)
.|++|+.|++.++.....-+..|..+.++..+...... ....+.... .+
T Consensus 122 ~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~ 201 (329)
T 3sb4_A 122 GCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQP 201 (329)
T ss_dssp TCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCG
T ss_pred cCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCc
Confidence 78999999999855433334566666666655543310 011111100 11
Q ss_pred CCcceEEEccCcCcccCCCC-CCCCCcceEeeccCCCccccCCC--CCCCCCCeEEecCCCCCccccccccccCCccc-c
Q 039990 1027 SNVVDVSIEDCDKLKAPLPT-GKLSSLQLLTLIECPGIVFFPEE--GLSTNLTDLEISGDNIYKPLVKWGFDKFSSLR-K 1102 (1217)
Q Consensus 1027 ~~L~~L~l~~~~~l~~~~~~-~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~-~ 1102 (1217)
.++..+.+.+.-.......+ ..+++|++|++.+| .+..++.. ..+.+|++|++.++ +..++..+|.++++|+ .
T Consensus 202 ~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n-~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~ 278 (329)
T 3sb4_A 202 RDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKT-NATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGT 278 (329)
T ss_dssp GGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTB-CCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEE
T ss_pred cccceEEEeeeecHHHHHHHHHhcCCCeEEECCCC-CcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEE
Confidence 22333333332100000000 13789999999975 47777766 45889999999996 6677778999999999 9
Q ss_pred eeeccCCCccccccccccCCCCCCcceEeecCCCCCcccCccccCCccccccccc
Q 039990 1103 HCINRCSDAVSFPEVEKGVILPTSLTLIRISDFPKLERLSSKGFHYLLSLEQLKV 1157 (1217)
Q Consensus 1103 L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~L~~L~l 1157 (1217)
+.+.+ .++.++. ..|..+++|+.|++++ +.++.|+...|.++++|+.++.
T Consensus 279 l~l~~--~l~~I~~--~aF~~c~~L~~l~l~~-n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 279 LELPA--SVTAIEF--GAFMGCDNLRYVLATG-DKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EEECT--TCCEECT--TTTTTCTTEEEEEECS-SCCCEECTTTTCTTCCCCEEEC
T ss_pred EEEcc--cceEEch--hhhhCCccCCEEEeCC-CccCccchhhhcCCcchhhhcc
Confidence 99998 6777775 6889999999999987 8999999888999999998864
No 128
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.98 E-value=3.4e-08 Score=113.51 Aligned_cols=286 Identities=11% Similarity=0.035 Sum_probs=171.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhccccCCC-CCeEEEEeCCcccHHHHHHHHH
Q 039990 79 PAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDF-KPKAWVCVSDDFDILRISKAIL 157 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F-~~~~wv~~~~~~~~~~~~~~i~ 157 (1217)
..++||+++++++.+++.....+.....+.+.|+|++|+||||+|+++++. ..... ..++|+.+....+...+...++
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~l~ 95 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWEL-YKDKTTARFVYINGFIYRNFTAIIGEIA 95 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHH-HTTSCCCEEEEEETTTCCSHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHH-HhhhcCeeEEEEeCccCCCHHHHHHHHH
Confidence 579999999999999886521110022348999999999999999999876 33321 2456777777777888999999
Q ss_pred HHhhcCCCC-CCChhHHHHHHHHHHHhc-------CcC-----HHHHHHhhcccCCCC----CCcEEEEEcCchHHHHhh
Q 039990 158 ESITRSSCG-LTDLNSVQLKLKEAVFKK-------NKS-----YELWQALKSPFMAGA----PGSRIIVTTRSMDVALKM 220 (1217)
Q Consensus 158 ~~l~~~~~~-~~~~~~~~~~l~~~l~~~-------~~~-----~~~~~~l~~~~~~~~----~gs~ilvTtR~~~v~~~~ 220 (1217)
..++..... ..........+...+... .|+ .+....+...+.... .+..||+||+........
T Consensus 96 ~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l 175 (389)
T 1fnn_A 96 RSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNL 175 (389)
T ss_dssp HHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTS
T ss_pred HHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHh
Confidence 888654322 224455555555555422 222 233444444442211 467788888776443222
Q ss_pred C-------CCceEeccCCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhc---------cCCchhHHHHHHH-h--
Q 039990 221 G-------SGKNYELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKC---------KGLPLAARALGGL-L-- 281 (1217)
Q Consensus 221 ~-------~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~---------~g~PLai~~~~~~-l-- 281 (1217)
. ....+.+++++.++..+++...+...... ..-..+..+.|++.+ +|.|-.+..+... .
T Consensus 176 ~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~ 253 (389)
T 1fnn_A 176 DPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAE--GSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYA 253 (389)
T ss_dssp CHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCT--TSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHH
T ss_pred CHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCC--CCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHH
Confidence 1 12479999999999999998876321100 112245778889998 7876444333221 1
Q ss_pred h---cCC--ChhHHHHHHhhccCCCCCCCCchHHHHHhhcCCChhHHHHHHHhhcCC---CCcccChHHHHHHHHH----
Q 039990 282 R---SKQ--RVDEWRAILNSKIWDLEDEIEIPSVLKLSYHHLPSHLKRCFAYCAILP---KDYEFQEEELVLLWIA---- 349 (1217)
Q Consensus 282 ~---~~~--~~~~w~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~f~~~~~fp---~~~~i~~~~li~~w~~---- 349 (1217)
. +.. +.+....+..... ...+.-.+..|+.+.+.++..++.+. .+..+....+...+..
T Consensus 254 a~~~~~~~i~~~~v~~~~~~~~---------~~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~ 324 (389)
T 1fnn_A 254 AQQNGRKHIAPEDVRKSSKEVL---------FGISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEE 324 (389)
T ss_dssp HHHTTCSSCCHHHHHHHHHHHS---------CCCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHH
T ss_pred HHHhCCCCcCHHHHHHHHHHHh---------hhhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHH
Confidence 1 111 1333333333211 11123446778888888888777654 2224555666554433
Q ss_pred hCCcccccccccHHHHHHHHHHHHHhccCCccc
Q 039990 350 EGFIQQSKYSKQLEDWGSEYFHDLLSRSMFQKS 382 (1217)
Q Consensus 350 ~g~i~~~~~~~~~~~~~~~~l~~L~~~sl~~~~ 382 (1217)
.|... .......+++++|.+++++...
T Consensus 325 ~~~~~------~~~~~~~~~l~~L~~~gli~~~ 351 (389)
T 1fnn_A 325 YGERP------RVHSQLWSYLNDLREKGIVETR 351 (389)
T ss_dssp TTCCC------CCHHHHHHHHHHHHHTTSSEEE
T ss_pred cCCCC------CCHHHHHHHHHHHHhCCCeEEe
Confidence 12111 1124567889999999999874
No 129
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.96 E-value=8.8e-09 Score=118.36 Aligned_cols=284 Identities=13% Similarity=0.058 Sum_probs=164.7
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhccccCCC---CCeEEEEeCCcccHHHHHH
Q 039990 78 EPAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDF---KPKAWVCVSDDFDILRISK 154 (1217)
Q Consensus 78 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F---~~~~wv~~~~~~~~~~~~~ 154 (1217)
+..|+||+++++.+.+++.....+ ...+.+.|+|++|+||||||+++++. ....+ ...+|+.+....+...++.
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~~--~~~~~vli~G~~G~GKTtl~~~l~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~ 95 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYRE--EKPNNIFIYGLTGTGKTAVVKFVLSK-LHKKFLGKFKHVYINTRQIDTPYRVLA 95 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGGT--CCCCCEEEEECTTSSHHHHHHHHHHH-HHHHTCSSCEEEEEEHHHHCSHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcC--CCCCeEEEECCCCCCHHHHHHHHHHH-HHHHhcCCceEEEEECCCCCCHHHHHH
Confidence 367999999999999988742101 23468899999999999999999876 33222 2456777766667777888
Q ss_pred HHHHHhhcCCCC-CCChhHHHHHHHHHHHhc-------CcCHHHH---------HHhhcccCC-CCCCcEEEEEcCchHH
Q 039990 155 AILESITRSSCG-LTDLNSVQLKLKEAVFKK-------NKSYELW---------QALKSPFMA-GAPGSRIIVTTRSMDV 216 (1217)
Q Consensus 155 ~i~~~l~~~~~~-~~~~~~~~~~l~~~l~~~-------~~~~~~~---------~~l~~~~~~-~~~gs~ilvTtR~~~v 216 (1217)
.++.+++..... .....+....+...+... .|+.+.. ..+...+.. ...+..+|+||+....
T Consensus 96 ~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~ 175 (386)
T 2qby_A 96 DLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKF 175 (386)
T ss_dssp HHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGG
T ss_pred HHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCCh
Confidence 887777543321 223445555555555432 3333222 222222211 2345667888876543
Q ss_pred HHhhC-------CCceEeccCCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhcc---CCchhHHH-HHHHh--h-
Q 039990 217 ALKMG-------SGKNYELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCK---GLPLAARA-LGGLL--R- 282 (1217)
Q Consensus 217 ~~~~~-------~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~---g~PLai~~-~~~~l--~- 282 (1217)
...+. ....+++++++.++..+++...+..... ...-..++.+.+++.++ |.|..+.. +.... .
T Consensus 176 ~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~ 253 (386)
T 2qby_A 176 VDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFK--PGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAE 253 (386)
T ss_dssp GGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBC--SSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhcc--CCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 22111 1248999999999999999986531110 11222456778888887 99884433 22221 1
Q ss_pred --c--CCChhHHHHHHhhccCCCCCCCCchHHHHHhhcCCChhHHHHHHHhhcCCC-C-cccChHHHHHHH--HH--hCC
Q 039990 283 --S--KQRVDEWRAILNSKIWDLEDEIEIPSVLKLSYHHLPSHLKRCFAYCAILPK-D-YEFQEEELVLLW--IA--EGF 352 (1217)
Q Consensus 283 --~--~~~~~~w~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~f~~~~~fp~-~-~~i~~~~li~~w--~~--~g~ 352 (1217)
+ .-+.+.++.++... ....+.-.+..+|.+.+..+..++...+ + -.+...++.+.. ++ .|
T Consensus 254 ~~~~~~i~~~~v~~a~~~~---------~~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g- 323 (386)
T 2qby_A 254 RMKDTKVKEEYVYMAKEEI---------ERDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLG- 323 (386)
T ss_dssp HTTCSSCCHHHHHHHHHHH---------HHHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHT-
T ss_pred hcCCCccCHHHHHHHHHHH---------hhchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcC-
Confidence 1 11245555555432 1235666788999998888877774322 1 123333332221 11 12
Q ss_pred cccccccccHHHHHHHHHHHHHhccCCcc
Q 039990 353 IQQSKYSKQLEDWGSEYFHDLLSRSMFQK 381 (1217)
Q Consensus 353 i~~~~~~~~~~~~~~~~l~~L~~~sl~~~ 381 (1217)
+.+ ........+++.|.+.++++.
T Consensus 324 ~~~-----~~~~~~~~~l~~L~~~gli~~ 347 (386)
T 2qby_A 324 VEA-----VTQRRVSDIINELDMVGILTA 347 (386)
T ss_dssp CCC-----CCHHHHHHHHHHHHHHTSEEE
T ss_pred CCC-----CCHHHHHHHHHHHHhCCCEEE
Confidence 111 112446678999999999976
No 130
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.94 E-value=6e-09 Score=108.29 Aligned_cols=127 Identities=15% Similarity=0.111 Sum_probs=98.4
Q ss_pred CcceEeeccCCCcccc-CCC--CCCCCCCeEEecCCCCCccccccccccCCcccceeeccCCCccccccccccCCCCCCc
Q 039990 1051 SLQLLTLIECPGIVFF-PEE--GLSTNLTDLEISGDNIYKPLVKWGFDKFSSLRKHCINRCSDAVSFPEVEKGVILPTSL 1127 (1217)
Q Consensus 1051 ~L~~L~l~~c~~l~~~-~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L 1127 (1217)
.+++|++++|. +..+ +.. ..+++|++|++++|...... ...|.++++|++|++++|.. ..++. ..+..+++|
T Consensus 33 ~~~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~-~~~~~~l~~L~~L~Ls~N~l-~~~~~--~~~~~l~~L 107 (220)
T 2v70_A 33 YTAELRLNNNE-FTVLEATGIFKKLPQLRKINFSNNKITDIE-EGAFEGASGVNEILLTSNRL-ENVQH--KMFKGLESL 107 (220)
T ss_dssp TCSEEECCSSC-CCEECCCCCGGGCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCC-CCCCG--GGGTTCSSC
T ss_pred CCCEEEcCCCc-CCccCchhhhccCCCCCEEECCCCcCCEEC-HHHhCCCCCCCEEECCCCcc-CccCH--hHhcCCcCC
Confidence 45666666643 3333 222 45789999999998866544 33689999999999999754 55544 356778999
Q ss_pred ceEeecCCCCCcccCccccCCcccccccccccccCcccCCCC--CCCCccceEeccCCc
Q 039990 1128 TLIRISDFPKLERLSSKGFHYLLSLEQLKVSSCPNFTSFPEA--GFPSSLLFLDIQGCP 1184 (1217)
Q Consensus 1128 ~~L~l~~c~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~lp~~--~~~~sL~~L~l~~c~ 1184 (1217)
++|++++ |.+..+++..+.++++|++|++++| .++.++.. ..+++|+.|++++++
T Consensus 108 ~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 108 KTLMLRS-NRITCVGNDSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp CEEECTT-SCCCCBCTTSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CEEECCC-CcCCeECHhHcCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCcC
Confidence 9999999 7899887688999999999999999 77777433 557899999999986
No 131
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.91 E-value=1.7e-10 Score=137.69 Aligned_cols=186 Identities=17% Similarity=0.099 Sum_probs=100.9
Q ss_pred cccccCcEEecccccccccccccccccccccEEeecCCc-------------cccccCCCCccCccccccc-ccccccCh
Q 039990 512 TSLFNLEILILSYCWCLLKLPSSIGNLVNLHHLDIEGAD-------------RLCELPLGMKELKCLRTLT-DFINVIDS 577 (1217)
Q Consensus 512 ~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~-------------~l~~lp~~i~~L~~L~~L~-~~~n~~~~ 577 (1217)
...++|+.|+|++| .++.+|.+|+++++|+.|++++|. .....|..++.|++|+.|+ +..|....
T Consensus 346 ~~~~~L~~L~Ls~n-~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVE-KSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp STTTTSSSCCCCHH-HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred ccCccceeccCChh-hHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence 45566667777766 566667667777777776665542 1233444566666666665 22221110
Q ss_pred hhhHHHHhcCCCCCCeEEEEecCCCCchhhHHHHhcccCCCCCccEEEEEeeCCCCCCCCcCCCCcCcccEEEEecCCCC
Q 039990 578 QEANEAMLRGKKDLEVLKLVWSGGPVDELREKNILDMLKPHCNIKRLEIISYGSTRFPSWVGDPSFSNVAVLKLENCDRC 657 (1217)
Q Consensus 578 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~ 657 (1217)
. +.+.+ ..+ .+..+ +...|+.|+++++....+|. +. .+++|+.|+|++|. +
T Consensus 425 L-------------~~l~l--------~~n---~i~~l-~~~~L~~L~Ls~n~l~~lp~-~~--~l~~L~~L~Ls~N~-l 475 (567)
T 1dce_A 425 L-------------RSKFL--------LEN---SVLKM-EYADVRVLHLAHKDLTVLCH-LE--QLLLVTHLDLSHNR-L 475 (567)
T ss_dssp H-------------HHHHH--------HHH---HHHHH-HHTTCSEEECTTSCCSSCCC-GG--GGTTCCEEECCSSC-C
T ss_pred h-------------hhhhh--------hcc---ccccc-CccCceEEEecCCCCCCCcC-cc--ccccCcEeecCccc-c
Confidence 0 00000 000 00111 11246777777777777776 43 36778888887754 4
Q ss_pred CCCC-CCCCcCCCCeeEEcCCCCceEeCccccCCCCcccCcccceeeccccccccccccCCccccccccCccccEEeecC
Q 039990 658 TSLP-SLGQLCSLKDLTIVGMSALKSVGSEIYGEGCSKPFRSLQTLYFEDLQEWEHWEPNRENDEHVQAFSHLRKLSIKR 736 (1217)
Q Consensus 658 ~~l~-~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 736 (1217)
..+| .++.+++|+.|++++ +.++.++ .+. .+++|+.|+++++.. .... .+..+..+++|+.|++++
T Consensus 476 ~~lp~~~~~l~~L~~L~Ls~-N~l~~lp-~l~------~l~~L~~L~Ls~N~l-~~~~----~p~~l~~l~~L~~L~L~~ 542 (567)
T 1dce_A 476 RALPPALAALRCLEVLQASD-NALENVD-GVA------NLPRLQELLLCNNRL-QQSA----AIQPLVSCPRLVLLNLQG 542 (567)
T ss_dssp CCCCGGGGGCTTCCEEECCS-SCCCCCG-GGT------TCSSCCEEECCSSCC-CSSS----TTGGGGGCTTCCEEECTT
T ss_pred cccchhhhcCCCCCEEECCC-CCCCCCc-ccC------CCCCCcEEECCCCCC-CCCC----CcHHHhcCCCCCEEEecC
Confidence 4666 477777888888875 4455544 222 266677777766532 1110 023333567777777776
Q ss_pred CCCcc
Q 039990 737 CPKLS 741 (1217)
Q Consensus 737 c~~L~ 741 (1217)
+ .+.
T Consensus 543 N-~l~ 546 (567)
T 1dce_A 543 N-SLC 546 (567)
T ss_dssp S-GGG
T ss_pred C-cCC
Confidence 6 344
No 132
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.88 E-value=1.2e-07 Score=107.92 Aligned_cols=211 Identities=14% Similarity=0.197 Sum_probs=128.2
Q ss_pred CcceEeeccCCCccccc-cccCCCCcccEEEEcCCCCCccccccCCCCCCcceEEecCCCCCcccCCCCCC--CCcceEE
Q 039990 957 AVEELTIDSCSNIESIA-ERFHDDACLRSIRLSYCKNLKSLPKGLNNLSHLHRRSIQGCHNLVSLPEDALP--SNVVDVS 1033 (1217)
Q Consensus 957 ~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~--~~L~~L~ 1033 (1217)
+|+.+.+.+ .++.++ ..+..|++|+.+++.+ +.+..++...-.+.+|+.+.+.+ .++.++...+. ++|+.++
T Consensus 158 ~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~-n~l~~I~~~aF~~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~ 232 (401)
T 4fdw_A 158 TVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSK-TKITKLPASTFVYAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIE 232 (401)
T ss_dssp CCCEEECCT--TCCEECSSTTTTCTTCCEEECTT-SCCSEECTTTTTTCCCSEEECCT--TCCEECTTTTTTCTTCCCEE
T ss_pred CceEEEeCC--CccEehHHHhhCcccCCeeecCC-CcceEechhhEeecccCEEEeCC--chheehhhHhhCCCCCCEEe
Confidence 455555543 333343 2344455566666655 23444444333345555555543 25555443332 3555555
Q ss_pred EccCcCcccCCCCCCCCCcceEeeccCCCccccCCC--CCCCCCCeEEecCCCCC----ccccccccccCCcccceeecc
Q 039990 1034 IEDCDKLKAPLPTGKLSSLQLLTLIECPGIVFFPEE--GLSTNLTDLEISGDNIY----KPLVKWGFDKFSSLRKHCINR 1107 (1217)
Q Consensus 1034 l~~~~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~~~~~----~~~~~~~~~~l~~L~~L~l~~ 1107 (1217)
+..+-..-....+.+ .+|+.+.+.+ .+..++.. ..+++|+.+.+.++... ..++..+|.++++|+.+.+.+
T Consensus 233 l~~~l~~I~~~aF~~-~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~ 309 (401)
T 4fdw_A 233 IPENVSTIGQEAFRE-SGITTVKLPN--GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE 309 (401)
T ss_dssp CCTTCCEECTTTTTT-CCCSEEEEET--TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT
T ss_pred cCCCccCcccccccc-CCccEEEeCC--CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC
Confidence 544210000122233 5677777743 34555444 34677888877775442 245666788999999999984
Q ss_pred CCCccccccccccCCCCCCcceEeecCCCCCcccCccccCCcccccccccccccCcccCCCC---CCCCccceEeccCC
Q 039990 1108 CSDAVSFPEVEKGVILPTSLTLIRISDFPKLERLSSKGFHYLLSLEQLKVSSCPNFTSFPEA---GFPSSLLFLDIQGC 1183 (1217)
Q Consensus 1108 ~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~lp~~---~~~~sL~~L~l~~c 1183 (1217)
.+..++. ..|..+++|+.+.+.+ +++.|+...|.++ +|+.+++.++ .+..++.. +.+.++..|.+...
T Consensus 310 --~i~~I~~--~aF~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 310 --SIRILGQ--GLLGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGT-TPPQVFEKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp --TCCEECT--TTTTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCS-SCCBCCCSSCCCSCTTCCEEEECGG
T ss_pred --ceEEEhh--hhhcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCC-CCcccccccccCCCCCccEEEeCHH
Confidence 4777765 6788889999999964 6888887888998 9999999988 66666654 33467788887653
No 133
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.86 E-value=2.5e-11 Score=144.90 Aligned_cols=199 Identities=14% Similarity=0.091 Sum_probs=113.5
Q ss_pred CCccEEeecCCCCCcccccccccccCcceEeeccCCCccccccccCCCCcccEEEEcCCCCCccccccCCCCCCcceEE-
Q 039990 932 VTLKCIQIEDCSNFKVLTSECQLSVAVEELTIDSCSNIESIAERFHDDACLRSIRLSYCKNLKSLPKGLNNLSHLHRRS- 1010 (1217)
Q Consensus 932 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~- 1010 (1217)
++|+.|++++| .++.+|..++++++|+.|++++|..+..++... ..++.....|..+..+++|+.|+
T Consensus 349 ~~L~~L~Ls~n-~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll-----------~~~~~~~~~~~~l~~l~~L~~L~~ 416 (567)
T 1dce_A 349 EQLFRCELSVE-KSTVLQSELESCKELQELEPENKWCLLTIILLM-----------RALDPLLYEKETLQYFSTLKAVDP 416 (567)
T ss_dssp TTSSSCCCCHH-HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-----------HHHCTGGGHHHHHHHHHHHHHHCG
T ss_pred ccceeccCChh-hHHhhHHHHHHHHHHHHhccccchhhhhHHHHH-----------HhcccccCCHHHHHHHHhcccCcc
Confidence 46777777775 356778888888888888886653222111100 01111222233333344444443
Q ss_pred ecCC------------CCCcccCCCCCCCCcceEEEccCcCcccCCCCCCCCCcceEeeccCCCccccCCC-CCCCCCCe
Q 039990 1011 IQGC------------HNLVSLPEDALPSNVVDVSIEDCDKLKAPLPTGKLSSLQLLTLIECPGIVFFPEE-GLSTNLTD 1077 (1217)
Q Consensus 1011 l~~c------------~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~-~~~~~L~~ 1077 (1217)
++.+ +.++.++. ..|+.|++++|.....| .+..+++|++|++++|. +..+|.. +.+++|++
T Consensus 417 l~~n~~~~L~~l~l~~n~i~~l~~----~~L~~L~Ls~n~l~~lp-~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~ 490 (567)
T 1dce_A 417 MRAAYLDDLRSKFLLENSVLKMEY----ADVRVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNR-LRALPPALAALRCLEV 490 (567)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHH----TTCSEEECTTSCCSSCC-CGGGGTTCCEEECCSSC-CCCCCGGGGGCTTCCE
T ss_pred hhhcccchhhhhhhhcccccccCc----cCceEEEecCCCCCCCc-CccccccCcEeecCccc-ccccchhhhcCCCCCE
Confidence 1111 01222221 24666666666544432 35667777777777753 4455544 55777888
Q ss_pred EEecCCCCCccccccccccCCcccceeeccCCCcccc--ccccccCCCCCCcceEeecCCCCCcccCccc---cCCcccc
Q 039990 1078 LEISGDNIYKPLVKWGFDKFSSLRKHCINRCSDAVSF--PEVEKGVILPTSLTLIRISDFPKLERLSSKG---FHYLLSL 1152 (1217)
Q Consensus 1078 L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~--~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~---~~~l~~L 1152 (1217)
|++++|.... ++ .+..+++|+.|++++|. +..+ |. .+..+++|+.|++++ |.+..+|+.. +..+++|
T Consensus 491 L~Ls~N~l~~-lp--~l~~l~~L~~L~Ls~N~-l~~~~~p~---~l~~l~~L~~L~L~~-N~l~~~~~~~~~l~~~lp~L 562 (567)
T 1dce_A 491 LQASDNALEN-VD--GVANLPRLQELLLCNNR-LQQSAAIQ---PLVSCPRLVLLNLQG-NSLCQEEGIQERLAEMLPSV 562 (567)
T ss_dssp EECCSSCCCC-CG--GGTTCSSCCEEECCSSC-CCSSSTTG---GGGGCTTCCEEECTT-SGGGGSSSCTTHHHHHCTTC
T ss_pred EECCCCCCCC-Cc--ccCCCCCCcEEECCCCC-CCCCCCcH---HHhcCCCCCEEEecC-CcCCCCccHHHHHHHHCccc
Confidence 8888876665 44 57778888888888864 4444 44 455678888888887 6677766321 2236677
Q ss_pred cccc
Q 039990 1153 EQLK 1156 (1217)
Q Consensus 1153 ~~L~ 1156 (1217)
+.|+
T Consensus 563 ~~L~ 566 (567)
T 1dce_A 563 SSIL 566 (567)
T ss_dssp SEEE
T ss_pred CccC
Confidence 7764
No 134
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.85 E-value=1.2e-07 Score=107.80 Aligned_cols=213 Identities=12% Similarity=0.086 Sum_probs=155.2
Q ss_pred CccEEeecCCCCCccc-ccccccccCcceEeeccCCCccccccccCCCCcccEEEEcCCCCCccc-cccCCCCCCcceEE
Q 039990 933 TLKCIQIEDCSNFKVL-TSECQLSVAVEELTIDSCSNIESIAERFHDDACLRSIRLSYCKNLKSL-PKGLNNLSHLHRRS 1010 (1217)
Q Consensus 933 ~L~~L~l~~~~~l~~~-~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~L~~c~~l~~l-~~~l~~l~~L~~L~ 1010 (1217)
+|+.+.+.+ .+..+ ...|.++++|+.+++.++ .+..++...+.+++|+.+.|.. .+..+ ...|.++++|+.+.
T Consensus 158 ~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~n-~l~~I~~~aF~~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~ 232 (401)
T 4fdw_A 158 TVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSKT-KITKLPASTFVYAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIE 232 (401)
T ss_dssp CCCEEECCT--TCCEECSSTTTTCTTCCEEECTTS-CCSEECTTTTTTCCCSEEECCT--TCCEECTTTTTTCTTCCCEE
T ss_pred CceEEEeCC--CccEehHHHhhCcccCCeeecCCC-cceEechhhEeecccCEEEeCC--chheehhhHhhCCCCCCEEe
Confidence 577777764 34444 456778889999999874 5677776666678999999875 36666 45678899999999
Q ss_pred ecCCCCCcccCCCCCC-CCcceEEEccCcCcccCCCCCCCCCcceEeeccCCC----ccccCCC--CCCCCCCeEEecCC
Q 039990 1011 IQGCHNLVSLPEDALP-SNVVDVSIEDCDKLKAPLPTGKLSSLQLLTLIECPG----IVFFPEE--GLSTNLTDLEISGD 1083 (1217)
Q Consensus 1011 l~~c~~l~~l~~~~~~-~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~c~~----l~~~~~~--~~~~~L~~L~l~~~ 1083 (1217)
+.+ .++.++...+. .+|+.+.+.+.-..-....+.+|++|+++.+.++.. ...++.. ..+++|+.+.+.+
T Consensus 233 l~~--~l~~I~~~aF~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~- 309 (401)
T 4fdw_A 233 IPE--NVSTIGQEAFRESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE- 309 (401)
T ss_dssp CCT--TCCEECTTTTTTCCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-
T ss_pred cCC--CccCccccccccCCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-
Confidence 986 47777765444 688888885432111124567899999999987532 1234444 4588999999984
Q ss_pred CCCccccccccccCCcccceeeccCCCccccccccccCCCCCCcceEeecCCCCCcccCccccCCcc-cccccccccc
Q 039990 1084 NIYKPLVKWGFDKFSSLRKHCINRCSDAVSFPEVEKGVILPTSLTLIRISDFPKLERLSSKGFHYLL-SLEQLKVSSC 1160 (1217)
Q Consensus 1084 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~-~L~~L~l~~c 1160 (1217)
.+..+...+|.++++|+.+.|.. .+..+.. .+|..+ +|+.+++.+ +.+..++...+.+++ +++.|++..+
T Consensus 310 -~i~~I~~~aF~~c~~L~~l~lp~--~l~~I~~--~aF~~~-~L~~l~l~~-n~~~~l~~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 310 -SIRILGQGLLGGNRKVTQLTIPA--NVTQINF--SAFNNT-GIKEVKVEG-TTPPQVFEKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp -TCCEECTTTTTTCCSCCEEEECT--TCCEECT--TSSSSS-CCCEEEECC-SSCCBCCCSSCCCSCTTCCEEEECGG
T ss_pred -ceEEEhhhhhcCCCCccEEEECc--cccEEcH--HhCCCC-CCCEEEEcC-CCCcccccccccCCCCCccEEEeCHH
Confidence 36667777899999999999965 3667665 678888 999999998 677888767777774 6778887765
No 135
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.84 E-value=7.7e-09 Score=102.53 Aligned_cols=129 Identities=15% Similarity=0.178 Sum_probs=84.9
Q ss_pred CCCCCccEEeecCCCCC-cccccccccccCcceEeeccCCCccccccccCCCCcccEEEEcCCCCCccccccCCCCCCcc
Q 039990 929 RLPVTLKCIQIEDCSNF-KVLTSECQLSVAVEELTIDSCSNIESIAERFHDDACLRSIRLSYCKNLKSLPKGLNNLSHLH 1007 (1217)
Q Consensus 929 ~~~~~L~~L~l~~~~~l-~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~ 1007 (1217)
..+++|+.|++++|... ..+|..+..+++|+.|++++|. +..+ ..+..+++|++|++++|.....+|..+..+++|+
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT 98 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence 44568899999988754 3677777888999999999876 5555 5666788999999998765444666666788999
Q ss_pred eEEecCCCCCcccCC---CCCCCCcceEEEccCcCcccCC----CCCCCCCcceEeeccC
Q 039990 1008 RRSIQGCHNLVSLPE---DALPSNVVDVSIEDCDKLKAPL----PTGKLSSLQLLTLIEC 1060 (1217)
Q Consensus 1008 ~L~l~~c~~l~~l~~---~~~~~~L~~L~l~~~~~l~~~~----~~~~l~~L~~L~l~~c 1060 (1217)
.|++++| .++.++. ....++|+.|++++|.....+. .+..+++|++|++++|
T Consensus 99 ~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 99 HLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp EEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred EEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence 9999887 4565542 1112455555555554433322 2244555555555554
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.81 E-value=2e-09 Score=107.58 Aligned_cols=84 Identities=20% Similarity=0.245 Sum_probs=59.3
Q ss_pred cCCCCcceEEEcCCCCcccccccccccccChhhhcccc-cCcEEecccccccccccccccccccccEEeecCCccccccC
Q 039990 478 LPKCKKLRVLSLEKDNIAEVPISIGCLKCLPEAITSLF-NLEILILSYCWCLLKLPSSIGNLVNLHHLDIEGADRLCELP 556 (1217)
Q Consensus 478 ~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~lp~~i~~L~-~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp 556 (1217)
|..+.+|++|++++|.++.+|. +..+. +|++|++++| .+..+ ..++.+++|++|++++| .+..+|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~-----------~~~~~~~L~~L~Ls~N-~l~~~-~~l~~l~~L~~L~Ls~N-~l~~~~ 80 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIEN-----------LGATLDQFDAIDFSDN-EIRKL-DGFPLLRRLKTLLVNNN-RICRIG 80 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCC-----------GGGGTTCCSEEECCSS-CCCEE-CCCCCCSSCCEEECCSS-CCCEEC
T ss_pred cCCcCCceEEEeeCCCCchhHH-----------hhhcCCCCCEEECCCC-CCCcc-cccccCCCCCEEECCCC-cccccC
Confidence 4567788888888888876542 44444 8888888887 67776 45788888888888888 677777
Q ss_pred CCC-ccCccccccccccccc
Q 039990 557 LGM-KELKCLRTLTDFINVI 575 (1217)
Q Consensus 557 ~~i-~~L~~L~~L~~~~n~~ 575 (1217)
.++ +.+++|++|++..|.+
T Consensus 81 ~~~~~~l~~L~~L~L~~N~i 100 (176)
T 1a9n_A 81 EGLDQALPDLTELILTNNSL 100 (176)
T ss_dssp SCHHHHCTTCCEEECCSCCC
T ss_pred cchhhcCCCCCEEECCCCcC
Confidence 654 6666666666554433
No 137
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.79 E-value=7.5e-09 Score=100.21 Aligned_cols=107 Identities=15% Similarity=0.151 Sum_probs=51.7
Q ss_pred CCCCCcceEeeccCCCccccCCCCCCCCCCeEEecCCCCCccccccccccCCcccceeeccCCCccccccccccCCCCCC
Q 039990 1047 GKLSSLQLLTLIECPGIVFFPEEGLSTNLTDLEISGDNIYKPLVKWGFDKFSSLRKHCINRCSDAVSFPEVEKGVILPTS 1126 (1217)
Q Consensus 1047 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 1126 (1217)
..+++|++|++++|. +..++....+++|++|++++|.....++. .+..+++|++|++++|. +..++. ...+..+++
T Consensus 39 ~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~ls~N~-i~~~~~-~~~~~~l~~ 114 (149)
T 2je0_A 39 DEFEELEFLSTINVG-LTSIANLPKLNKLKKLELSDNRVSGGLEV-LAEKCPNLTHLNLSGNK-IKDLST-IEPLKKLEN 114 (149)
T ss_dssp TTCTTCCEEECTTSC-CCCCTTCCCCTTCCEEECCSSCCCSCTHH-HHHHCTTCCEEECTTSC-CCSHHH-HGGGGGCTT
T ss_pred hhcCCCcEEECcCCC-CCCchhhhcCCCCCEEECCCCcccchHHH-HhhhCCCCCEEECCCCc-CCChHH-HHHHhhCCC
Confidence 455666666666652 33333224455566666666555443332 34445566666666543 232221 012334455
Q ss_pred cceEeecCCCCCcccCc---cccCCcccccccccc
Q 039990 1127 LTLIRISDFPKLERLSS---KGFHYLLSLEQLKVS 1158 (1217)
Q Consensus 1127 L~~L~l~~c~~l~~l~~---~~~~~l~~L~~L~l~ 1158 (1217)
|++|++++ +.+..++. ..+..+++|++|+++
T Consensus 115 L~~L~l~~-N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 115 LKSLDLFN-CEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CCEEECTT-CGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCEEeCcC-CcccchHHHHHHHHHHCCCcccccCC
Confidence 55555555 34555442 234455555555543
No 138
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.77 E-value=3.8e-08 Score=99.64 Aligned_cols=123 Identities=20% Similarity=0.308 Sum_probs=84.6
Q ss_pred ceEeeccCCCccccCCCCCCCCCCeEEecCCCCCccccccccccCCcccceeeccCCCccccccccccCCCCCCcceEee
Q 039990 1053 QLLTLIECPGIVFFPEEGLSTNLTDLEISGDNIYKPLVKWGFDKFSSLRKHCINRCSDAVSFPEVEKGVILPTSLTLIRI 1132 (1217)
Q Consensus 1053 ~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l 1132 (1217)
+.+++++ ..+..+|. ..+++|++|++++|... .++. .|..+++|++|++++|. +..++. ..|..+++|++|++
T Consensus 13 ~~l~~~~-~~l~~ip~-~~~~~l~~L~L~~n~i~-~ip~-~~~~l~~L~~L~Ls~N~-i~~i~~--~~f~~l~~L~~L~L 85 (193)
T 2wfh_A 13 TVVRCSN-KGLKVLPK-GIPRDVTELYLDGNQFT-LVPK-ELSNYKHLTLIDLSNNR-ISTLSN--QSFSNMTQLLTLIL 85 (193)
T ss_dssp TEEECTT-SCCSSCCS-CCCTTCCEEECCSSCCC-SCCG-GGGGCTTCCEEECCSSC-CCCCCT--TTTTTCTTCCEEEC
T ss_pred CEEEcCC-CCCCcCCC-CCCCCCCEEECCCCcCc-hhHH-HhhcccCCCEEECCCCc-CCEeCH--hHccCCCCCCEEEC
Confidence 4555555 34555553 34567788888777655 3442 57778888888888754 444443 35667788888888
Q ss_pred cCCCCCcccCccccCCcccccccccccccCcccCCCC--CCCCccceEeccCCc
Q 039990 1133 SDFPKLERLSSKGFHYLLSLEQLKVSSCPNFTSFPEA--GFPSSLLFLDIQGCP 1184 (1217)
Q Consensus 1133 ~~c~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~lp~~--~~~~sL~~L~l~~c~ 1184 (1217)
++ |.+..++...+.++++|++|++++| .++.+|.. ..+++|+.|+++++|
T Consensus 86 s~-N~l~~i~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 86 SY-NRLRCIPPRTFDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CS-SCCCBCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CC-CccCEeCHHHhCCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCCCC
Confidence 87 6788887667888888888888888 67777764 346788888888765
No 139
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.77 E-value=3.4e-08 Score=100.07 Aligned_cols=105 Identities=17% Similarity=0.206 Sum_probs=43.9
Q ss_pred CCCeEEecCCCCCccccccccccCCcccceeeccCCCccccccccccCCCCCCcceEeecCCCCCcccCccccCCccccc
Q 039990 1074 NLTDLEISGDNIYKPLVKWGFDKFSSLRKHCINRCSDAVSFPEVEKGVILPTSLTLIRISDFPKLERLSSKGFHYLLSLE 1153 (1217)
Q Consensus 1074 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~L~ 1153 (1217)
+|++|++++|......+...+..+++|++|++++|......|. .+..+++|++|++++ |++..++...+.++++|+
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~---~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~ 105 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPN---AFEGASHIQELQLGE-NKIKEISNKMFLGLHQLK 105 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTT---TTTTCTTCCEEECCS-CCCCEECSSSSTTCTTCC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHh---HcCCcccCCEEECCC-CcCCccCHHHhcCCCCCC
Confidence 4444444444333222211244444555555544332221122 333444455555554 444444433444455555
Q ss_pred ccccccccCcccC-CCC-CCCCccceEeccCC
Q 039990 1154 QLKVSSCPNFTSF-PEA-GFPSSLLFLDIQGC 1183 (1217)
Q Consensus 1154 ~L~l~~c~~l~~l-p~~-~~~~sL~~L~l~~c 1183 (1217)
+|++++| .++.+ |.. ..+++|+.|+++++
T Consensus 106 ~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 106 TLNLYDN-QISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp EEECCSS-CCCEECTTSSTTCTTCCEEECTTC
T ss_pred EEECCCC-cCCeeCHHHhhcCCCCCEEEeCCC
Confidence 5555554 33333 221 22344555554444
No 140
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.74 E-value=8.5e-09 Score=99.82 Aligned_cols=127 Identities=17% Similarity=0.125 Sum_probs=97.8
Q ss_pred CCCCcceEeeccCCCc-cccCCC-CCCCCCCeEEecCCCCCccccccccccCCcccceeeccCCCccccccccccCCCCC
Q 039990 1048 KLSSLQLLTLIECPGI-VFFPEE-GLSTNLTDLEISGDNIYKPLVKWGFDKFSSLRKHCINRCSDAVSFPEVEKGVILPT 1125 (1217)
Q Consensus 1048 ~l~~L~~L~l~~c~~l-~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 1125 (1217)
..++|++|++++|..- ..+|.. ..+++|++|++++|..... ..+..+++|++|++++|.....+|. .+..++
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n~i~~~~~~---~~~~l~ 88 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNRVSGGLEV---LAEKCP 88 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSSCCCSCTHH---HHHHCT
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCCcccchHHH---HhhhCC
Confidence 4578888998887643 356655 5688999999999977655 3678999999999999765544665 334578
Q ss_pred CcceEeecCCCCCcccCc-cccCCcccccccccccccCcccCCC-----CCCCCccceEeccC
Q 039990 1126 SLTLIRISDFPKLERLSS-KGFHYLLSLEQLKVSSCPNFTSFPE-----AGFPSSLLFLDIQG 1182 (1217)
Q Consensus 1126 ~L~~L~l~~c~~l~~l~~-~~~~~l~~L~~L~l~~c~~l~~lp~-----~~~~~sL~~L~l~~ 1182 (1217)
+|++|++++ +.+..++. ..+.++++|++|++++| .++.+|. ...+++|+.|++++
T Consensus 89 ~L~~L~ls~-N~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 89 NLTHLNLSG-NKIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TCCEEECTT-SCCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCEEECCC-CcCCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCCC
Confidence 999999999 57887642 56889999999999999 6777775 24468899888764
No 141
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.72 E-value=6.7e-08 Score=96.60 Aligned_cols=107 Identities=24% Similarity=0.340 Sum_probs=57.8
Q ss_pred CCCCCeEEecCCCCCccccccccccCCcccceeeccCCCccccccccccCCCCCCcceEeecCCCCCcccCccccCCccc
Q 039990 1072 STNLTDLEISGDNIYKPLVKWGFDKFSSLRKHCINRCSDAVSFPEVEKGVILPTSLTLIRISDFPKLERLSSKGFHYLLS 1151 (1217)
Q Consensus 1072 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~ 1151 (1217)
+++|++|++++|.... ++...+..+++|++|++++|. +..++. ..+..+++|++|++++ +.++.++...+.++++
T Consensus 27 ~~~l~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~-l~~~~~--~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~ 101 (177)
T 2o6r_A 27 PSSATRLELESNKLQS-LPHGVFDKLTQLTKLSLSQNQ-IQSLPD--GVFDKLTKLTILYLHE-NKLQSLPNGVFDKLTQ 101 (177)
T ss_dssp CTTCSEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSC-CCCCCT--TTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTT
T ss_pred CCCCcEEEeCCCcccE-eCHHHhcCcccccEEECCCCc-ceEeCh--hHccCCCccCEEECCC-CCccccCHHHhhCCcc
Confidence 3455555555554432 222234556666666666642 334433 2334556666666666 4566665444556666
Q ss_pred ccccccccccCcccCCCC--CCCCccceEeccCCc
Q 039990 1152 LEQLKVSSCPNFTSFPEA--GFPSSLLFLDIQGCP 1184 (1217)
Q Consensus 1152 L~~L~l~~c~~l~~lp~~--~~~~sL~~L~l~~c~ 1184 (1217)
|++|++++| .++.+|.. ..+++|+.|++++|+
T Consensus 102 L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 102 LKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCEEECcCC-cceEeCHHHhcCCcccCEEEecCCC
Confidence 666666666 55555543 234566666666554
No 142
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.72 E-value=4.3e-09 Score=129.90 Aligned_cols=118 Identities=22% Similarity=0.263 Sum_probs=67.1
Q ss_pred ccccccccccCcceEeeccCCCccccccccCCCCcccEEEEcCCCCCccccccCCCCCCcceEEecCCCCCcccCCCCCC
Q 039990 947 VLTSECQLSVAVEELTIDSCSNIESIAERFHDDACLRSIRLSYCKNLKSLPKGLNNLSHLHRRSIQGCHNLVSLPEDALP 1026 (1217)
Q Consensus 947 ~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~ 1026 (1217)
..+..+..++.|+.|+|++|. +..+|..++.+++|++|+|++|. +..+|..+..+++|+.|+|++|. ++.+|.
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~---- 287 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQ-IFNISANIFKYDFLTRLYLNGNS-LTELPAEIKNLSNLRVLDLSHNR-LTSLPA---- 287 (727)
T ss_dssp -------CCCCCCEEECTTSC-CSCCCGGGGGCCSCSCCBCTTSC-CSCCCGGGGGGTTCCEEECTTSC-CSSCCS----
T ss_pred cChhhhccCCCCcEEECCCCC-CCCCChhhcCCCCCCEEEeeCCc-CcccChhhhCCCCCCEEeCcCCc-CCccCh----
Confidence 335556667777777777754 34666666667777777777753 44667667777777777777753 445543
Q ss_pred CCcceEEEccCcCcccCCCCCCCCCcceEeeccCCCccccCCC-CCCCCCCeEEecCCCCCcccc
Q 039990 1027 SNVVDVSIEDCDKLKAPLPTGKLSSLQLLTLIECPGIVFFPEE-GLSTNLTDLEISGDNIYKPLV 1090 (1217)
Q Consensus 1027 ~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~~~~~~~~~ 1090 (1217)
.+..+++|++|+|++| .+..+|.. +.+++|++|+|++|.....++
T Consensus 288 ------------------~~~~l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p 333 (727)
T 4b8c_D 288 ------------------ELGSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPLEKQFL 333 (727)
T ss_dssp ------------------SGGGGTTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTSCCCSHHH
T ss_pred ------------------hhcCCCCCCEEECCCC-CCCccChhhhcCCCccEEeCCCCccCCCCh
Confidence 2344556666666554 33444443 345566666666665554443
No 143
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.71 E-value=3.5e-07 Score=104.70 Aligned_cols=212 Identities=15% Similarity=0.082 Sum_probs=121.1
Q ss_pred ccccccCcceEeeccCCCccccc-cccCCCCcccEEEEcCCCCCccc-cccCCCCCCcceEEecCCCCCcccCCCC-CCC
Q 039990 951 ECQLSVAVEELTIDSCSNIESIA-ERFHDDACLRSIRLSYCKNLKSL-PKGLNNLSHLHRRSIQGCHNLVSLPEDA-LPS 1027 (1217)
Q Consensus 951 ~~~~l~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~L~~c~~l~~l-~~~l~~l~~L~~L~l~~c~~l~~l~~~~-~~~ 1027 (1217)
.|.++.+|+.+.+.+. +..++ ..+..+++|+.+.+..+ ++.+ ...+.++..|+.+.+.+. ...+.... ...
T Consensus 157 aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~~--~~~i~~~~~~~~ 230 (394)
T 4fs7_A 157 AFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPNS--LYYLGDFALSKT 230 (394)
T ss_dssp TTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTC
T ss_pred hhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceeecCCC--ceEeehhhcccC
Confidence 4556667777776542 33333 23445667777666542 4444 234566666766665542 22332211 224
Q ss_pred CcceEEEccCcCcccCCCCCCCCCcceEeeccCCCccccCCC--CCCCCCCeEEecCCCCCccccccccccCCcccceee
Q 039990 1028 NVVDVSIEDCDKLKAPLPTGKLSSLQLLTLIECPGIVFFPEE--GLSTNLTDLEISGDNIYKPLVKWGFDKFSSLRKHCI 1105 (1217)
Q Consensus 1028 ~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 1105 (1217)
+|+.+.+...-..-....+..+.+|+.+.+..+ ...+... ..+.+++.+...... ++...|..+.+|+.+.+
T Consensus 231 ~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~--~~~i~~~~F~~~~~l~~~~~~~~~----i~~~~F~~~~~L~~i~l 304 (394)
T 4fs7_A 231 GVKNIIIPDSFTELGKSVFYGCTDLESISIQNN--KLRIGGSLFYNCSGLKKVIYGSVI----VPEKTFYGCSSLTEVKL 304 (394)
T ss_dssp CCCEEEECTTCCEECSSTTTTCSSCCEEEECCT--TCEECSCTTTTCTTCCEEEECSSE----ECTTTTTTCTTCCEEEE
T ss_pred CCceEEECCCceecccccccccccceeEEcCCC--cceeeccccccccccceeccCcee----ecccccccccccccccc
Confidence 666666654322111133456777777777543 2223222 335566666554432 33345677777887777
Q ss_pred ccCCCccccccccccCCCCCCcceEeecCCCCCcccCccccCCcccccccccccccCcccCCCC--CCCCccceEeccC
Q 039990 1106 NRCSDAVSFPEVEKGVILPTSLTLIRISDFPKLERLSSKGFHYLLSLEQLKVSSCPNFTSFPEA--GFPSSLLFLDIQG 1182 (1217)
Q Consensus 1106 ~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~lp~~--~~~~sL~~L~l~~ 1182 (1217)
.. .+..++. .+|..+++|+.+++.+ .++.|....|.++++|+.+.+..+ ++.++.. ..+++|+.+++..
T Consensus 305 ~~--~i~~I~~--~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 305 LD--SVKFIGE--EAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp CT--TCCEECT--TTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEEG
T ss_pred cc--ccceech--hhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEECC
Confidence 64 3555554 5677778888888763 577777677778888888887654 6777655 3356777777653
No 144
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.69 E-value=6.3e-07 Score=102.57 Aligned_cols=209 Identities=14% Similarity=0.136 Sum_probs=126.2
Q ss_pred CCccEEeecCCCCCccc-ccccccccCcceEeeccCCCccccc-cccCCCCcccEEEEcCCCCCccccccCCCCCCcceE
Q 039990 932 VTLKCIQIEDCSNFKVL-TSECQLSVAVEELTIDSCSNIESIA-ERFHDDACLRSIRLSYCKNLKSLPKGLNNLSHLHRR 1009 (1217)
Q Consensus 932 ~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L 1009 (1217)
.+|+.+.+.+. ...+ ...+.++.+|+.+++..+ ++.++ ..+..+..|+.+.+... ...+........+|+.+
T Consensus 162 ~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~~--~~~i~~~~~~~~~l~~i 235 (394)
T 4fs7_A 162 ESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPNS--LYYLGDFALSKTGVKNI 235 (394)
T ss_dssp TTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCCCCEE
T ss_pred CCCcEEecCCc--cceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceeecCCC--ceEeehhhcccCCCceE
Confidence 45666666432 2222 334556667777766542 33333 23444566666655442 23333334445666666
Q ss_pred EecCCCCCcccCCCCC--CCCcceEEEccCcCcccCCCCCCCCCcceEeeccCCCccccCCC--CCCCCCCeEEecCCCC
Q 039990 1010 SIQGCHNLVSLPEDAL--PSNVVDVSIEDCDKLKAPLPTGKLSSLQLLTLIECPGIVFFPEE--GLSTNLTDLEISGDNI 1085 (1217)
Q Consensus 1010 ~l~~c~~l~~l~~~~~--~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~~~~ 1085 (1217)
.+.. .++.+....+ +..|+.+.+..+...-....+..++.++.+..... .++.. ..+.+|+.+.+.++
T Consensus 236 ~ip~--~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~----~i~~~~F~~~~~L~~i~l~~~-- 307 (394)
T 4fs7_A 236 IIPD--SFTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSV----IVPEKTFYGCSSLTEVKLLDS-- 307 (394)
T ss_dssp EECT--TCCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSS----EECTTTTTTCTTCCEEEECTT--
T ss_pred EECC--CceecccccccccccceeEEcCCCcceeeccccccccccceeccCce----eeccccccccccccccccccc--
Confidence 6653 2344443222 24566666654432222234466777777766542 13322 34678888888653
Q ss_pred CccccccccccCCcccceeeccCCCccccccccccCCCCCCcceEeecCCCCCcccCccccCCcccccccccccc
Q 039990 1086 YKPLVKWGFDKFSSLRKHCINRCSDAVSFPEVEKGVILPTSLTLIRISDFPKLERLSSKGFHYLLSLEQLKVSSC 1160 (1217)
Q Consensus 1086 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~L~~L~l~~c 1160 (1217)
+..+...+|.++++|+.++|.. .++.+.. .+|..+++|+.+.+.. .++.|....|.++++|+.+++..+
T Consensus 308 i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~--~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 308 VKFIGEEAFESCTSLVSIDLPY--LVEEIGK--RSFRGCTSLSNINFPL--SLRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp CCEECTTTTTTCTTCCEECCCT--TCCEECT--TTTTTCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEEEGG
T ss_pred cceechhhhcCCCCCCEEEeCC--cccEEhH--HhccCCCCCCEEEECc--cccEehHHHhhCCCCCCEEEECCC
Confidence 5556666888999999999864 3666665 6788899999999975 488888788999999999988754
No 145
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.68 E-value=1.8e-08 Score=100.55 Aligned_cols=104 Identities=16% Similarity=0.229 Sum_probs=56.9
Q ss_pred cceEEEcCCCCcccccccccccccChhhhcccccCcEEecccccccccccccc-cccccccEEeecCCccccccCC--CC
Q 039990 483 KLRVLSLEKDNIAEVPISIGCLKCLPEAITSLFNLEILILSYCWCLLKLPSSI-GNLVNLHHLDIEGADRLCELPL--GM 559 (1217)
Q Consensus 483 ~Lr~L~L~~~~i~~lp~~i~~L~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i-~~L~~L~~L~l~~~~~l~~lp~--~i 559 (1217)
+|++|+|++|.++.++ .++.+.+|++|++++| .+..+|..+ +.+++|++|++++| .+..+|. .+
T Consensus 43 ~L~~L~Ls~N~l~~~~-----------~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~l 109 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKLD-----------GFPLLRRLKTLLVNNN-RICRIGEGLDQALPDLTELILTNN-SLVELGDLDPL 109 (176)
T ss_dssp CCSEEECCSSCCCEEC-----------CCCCCSSCCEEECCSS-CCCEECSCHHHHCTTCCEEECCSC-CCCCGGGGGGG
T ss_pred CCCEEECCCCCCCccc-----------ccccCCCCCEEECCCC-cccccCcchhhcCCCCCEEECCCC-cCCcchhhHhh
Confidence 5666666666665542 2455566666666665 455555443 56666666666666 5555554 45
Q ss_pred ccCcccccccccccccChhhh-HHHHhcCCCCCCeEEEEec
Q 039990 560 KELKCLRTLTDFINVIDSQEA-NEAMLRGKKDLEVLKLVWS 599 (1217)
Q Consensus 560 ~~L~~L~~L~~~~n~~~~~~~-~~~~l~~l~~L~~L~l~~~ 599 (1217)
+.+++|++|++..|....... ....+..+++|+.|++..+
T Consensus 110 ~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 110 ASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp GGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred hcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 566666666655554432211 1122445566666665443
No 146
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.65 E-value=9.9e-08 Score=96.51 Aligned_cols=65 Identities=17% Similarity=0.271 Sum_probs=35.2
Q ss_pred ccccCCcccceeeccCCCccccccccccCCCCCCcceEeecCCCCCcccCccccCCccccccccccccc
Q 039990 1093 GFDKFSSLRKHCINRCSDAVSFPEVEKGVILPTSLTLIRISDFPKLERLSSKGFHYLLSLEQLKVSSCP 1161 (1217)
Q Consensus 1093 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~L~~L~l~~c~ 1161 (1217)
.|.++++|++|++++|. +..++. ..|..+++|+.|++++ |.+..+|...+..+++|+.|++++|+
T Consensus 73 ~f~~l~~L~~L~Ls~N~-l~~i~~--~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 73 SFSNMTQLLTLILSYNR-LRCIPP--RTFDGLKSLRLLSLHG-NDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp TTTTCTTCCEEECCSSC-CCBCCT--TTTTTCTTCCEEECCS-SCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred HccCCCCCCEEECCCCc-cCEeCH--HHhCCCCCCCEEECCC-CCCCeeChhhhhcCccccEEEeCCCC
Confidence 34455555555555543 333332 2344556666666665 55666664456666666666666663
No 147
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.65 E-value=2.9e-08 Score=122.53 Aligned_cols=113 Identities=24% Similarity=0.202 Sum_probs=61.5
Q ss_pred hhhhhcCCCCcceEEEcCCCCcccccccccccccChhhhcccccCcEEecccccccccccccccccccccEEeecCCccc
Q 039990 473 VLSDLLPKCKKLRVLSLEKDNIAEVPISIGCLKCLPEAITSLFNLEILILSYCWCLLKLPSSIGNLVNLHHLDIEGADRL 552 (1217)
Q Consensus 473 ~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l 552 (1217)
.++..|..+..|++|+|++|.+..+| ..+.++.+|++|+|++| .+..+|..|++|++|++|+|++| .+
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~~l~----------~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N-~l 282 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIFNIS----------ANIFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHN-RL 282 (727)
T ss_dssp -------CCCCCCEEECTTSCCSCCC----------GGGGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTS-CC
T ss_pred cChhhhccCCCCcEEECCCCCCCCCC----------hhhcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCC-cC
Confidence 44555666666666666666666544 23445566666666665 45566666666666666666666 45
Q ss_pred cccCCCCccCcccccccccccccChhhhHHHHhcCCCCCCeEEEEecC
Q 039990 553 CELPLGMKELKCLRTLTDFINVIDSQEANEAMLRGKKDLEVLKLVWSG 600 (1217)
Q Consensus 553 ~~lp~~i~~L~~L~~L~~~~n~~~~~~~~~~~l~~l~~L~~L~l~~~~ 600 (1217)
..+|..|++|++|++|++..|.+... +..+.++++|+.|+++.|.
T Consensus 283 ~~lp~~~~~l~~L~~L~L~~N~l~~l---p~~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 283 TSLPAELGSCFQLKYFYFFDNMVTTL---PWEFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp SSCCSSGGGGTTCSEEECCSSCCCCC---CSSTTSCTTCCCEECTTSC
T ss_pred CccChhhcCCCCCCEEECCCCCCCcc---ChhhhcCCCccEEeCCCCc
Confidence 56666666666666666655544321 2225556666666665444
No 148
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.64 E-value=3.4e-08 Score=105.40 Aligned_cols=180 Identities=12% Similarity=0.107 Sum_probs=108.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhcc-ccCCC-------------------CCe
Q 039990 79 PAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDK-LTDDF-------------------KPK 138 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~-~~~~F-------------------~~~ 138 (1217)
.+++||++.++.+.+++.... ..+.+.|+|++|+||||+|+++++.. ....+ ...
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~-----~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDL 97 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTC-----CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSE
T ss_pred HHHhCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcce
Confidence 469999999999999997643 22488999999999999999998763 21111 111
Q ss_pred EEEEeCCcccHHHHHHHHHHHhhcCCCC-------CCChhHHHHHHHHHHHhcCcCHHHHHHhhcccCCCCCCcEEEEEc
Q 039990 139 AWVCVSDDFDILRISKAILESITRSSCG-------LTDLNSVQLKLKEAVFKKNKSYELWQALKSPFMAGAPGSRIIVTT 211 (1217)
Q Consensus 139 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~~gs~ilvTt 211 (1217)
+.+..... ...+....+++.+...... .++.+. .+.+.++.+...+.....+..+|+||
T Consensus 98 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~-------------l~~~~~~~l~~~l~~~~~~~~~i~~t 163 (250)
T 1njg_A 98 IEIDAASR-TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHM-------------LSRHSFNALLKTLEEPPEHVKFLLAT 163 (250)
T ss_dssp EEEETTCG-GGHHHHHHHHHSCCCSCSSSSSEEEEEETGGG-------------SCHHHHHHHHHHHHSCCTTEEEEEEE
T ss_pred EEecCccc-ccHHHHHHHHHHhhhchhcCCceEEEEECccc-------------ccHHHHHHHHHHHhcCCCceEEEEEe
Confidence 22222211 1122223333333211100 011111 12234455544444445678888888
Q ss_pred CchHHH-H-hhCCCceEeccCCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhccCCchhHHHHHHHh
Q 039990 212 RSMDVA-L-KMGSGKNYELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGLPLAARALGGLL 281 (1217)
Q Consensus 212 R~~~v~-~-~~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l 281 (1217)
+..... . .......+++++++.++..+++...+.... . .-..+..+.|++.++|.|..+..+....
T Consensus 164 ~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~-~---~~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 164 TDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEH-I---AHEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp SCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTT-C---CBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcC-C---CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 764321 1 112246899999999999999998774322 1 1124567899999999999988776543
No 149
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.63 E-value=1e-09 Score=112.13 Aligned_cols=109 Identities=26% Similarity=0.241 Sum_probs=84.8
Q ss_pred hhcCCCCcceEEEcCCCCcccccccccccccChhhhcccccCcEEecccccccccccccccccccccEEeecCCcccccc
Q 039990 476 DLLPKCKKLRVLSLEKDNIAEVPISIGCLKCLPEAITSLFNLEILILSYCWCLLKLPSSIGNLVNLHHLDIEGADRLCEL 555 (1217)
Q Consensus 476 ~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~l 555 (1217)
..|..+++|++|+|++|.++.+| .+.++.+|++|++++| .+..+|..+..+++|++|++++| .+..+
T Consensus 42 ~~~~~l~~L~~L~ls~n~l~~l~-----------~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N-~l~~l 108 (198)
T 1ds9_A 42 ATLSTLKACKHLALSTNNIEKIS-----------SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYN-QIASL 108 (198)
T ss_dssp HHHHHTTTCSEEECSEEEESCCC-----------CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEE-ECCCH
T ss_pred HHHhcCCCCCEEECCCCCCcccc-----------ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECcCC-cCCcC
Confidence 35777888999999988887654 4777888999999888 67888887788888999999888 78777
Q ss_pred CCCCccCcccccccccccccChhhhHHHHhcCCCCCCeEEEEec
Q 039990 556 PLGMKELKCLRTLTDFINVIDSQEANEAMLRGKKDLEVLKLVWS 599 (1217)
Q Consensus 556 p~~i~~L~~L~~L~~~~n~~~~~~~~~~~l~~l~~L~~L~l~~~ 599 (1217)
| .++.+++|++|++..|.+...... ..+..+++|+.|++..+
T Consensus 109 ~-~~~~l~~L~~L~l~~N~i~~~~~~-~~l~~l~~L~~L~l~~N 150 (198)
T 1ds9_A 109 S-GIEKLVNLRVLYMSNNKITNWGEI-DKLAALDKLEDLLLAGN 150 (198)
T ss_dssp H-HHHHHHHSSEEEESEEECCCHHHH-HHHTTTTTCSEEEECSC
T ss_pred C-ccccCCCCCEEECCCCcCCchhHH-HHHhcCCCCCEEEecCC
Confidence 7 688888888888887766543322 34777888888888644
No 150
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.62 E-value=5.6e-08 Score=97.18 Aligned_cols=108 Identities=23% Similarity=0.285 Sum_probs=69.5
Q ss_pred CccceEccccccccccccccchhhhhhhcCCCCcceEEEcCCCCcccccccccccccChhhhcccccCcEEecccccccc
Q 039990 450 ENLRTFLPIFMEDFFISFCISPMVLSDLLPKCKKLRVLSLEKDNIAEVPISIGCLKCLPEAITSLFNLEILILSYCWCLL 529 (1217)
Q Consensus 450 ~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~lp~~i~~L~~L~~L~L~~~~~l~ 529 (1217)
++++.|.+.++.. ..+++..|..+++|++|+|++|.++.+| +..+..+.+|++|++++| .+.
T Consensus 28 ~~l~~L~l~~n~l--------~~~~~~~~~~l~~L~~L~l~~n~l~~~~---------~~~~~~l~~L~~L~l~~N-~l~ 89 (177)
T 2o6r_A 28 SSATRLELESNKL--------QSLPHGVFDKLTQLTKLSLSQNQIQSLP---------DGVFDKLTKLTILYLHEN-KLQ 89 (177)
T ss_dssp TTCSEEECCSSCC--------CCCCTTTTTTCTTCSEEECCSSCCCCCC---------TTTTTTCTTCCEEECCSS-CCC
T ss_pred CCCcEEEeCCCcc--------cEeCHHHhcCcccccEEECCCCcceEeC---------hhHccCCCccCEEECCCC-Ccc
Confidence 4566666554432 2334445667777777777777777655 344667777777777777 566
Q ss_pred ccccc-ccccccccEEeecCCccccccCCC-CccCcccccccccccccC
Q 039990 530 KLPSS-IGNLVNLHHLDIEGADRLCELPLG-MKELKCLRTLTDFINVID 576 (1217)
Q Consensus 530 ~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~~~~n~~~ 576 (1217)
.+|.. +..+++|++|++++| .+..+|.. +..+++|++|++..|...
T Consensus 90 ~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 90 SLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccCHHHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCCee
Confidence 66654 567777777777777 66677655 366677777766655443
No 151
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.60 E-value=1.6e-07 Score=94.96 Aligned_cols=122 Identities=17% Similarity=0.214 Sum_probs=68.2
Q ss_pred ceEEecCCCCCcccCCCCCCCCcceEEEccCcCcccCCC--CCCCCCcceEeeccCCCccccCCC-CCCCCCCeEEecCC
Q 039990 1007 HRRSIQGCHNLVSLPEDALPSNVVDVSIEDCDKLKAPLP--TGKLSSLQLLTLIECPGIVFFPEE-GLSTNLTDLEISGD 1083 (1217)
Q Consensus 1007 ~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~~ 1083 (1217)
+.++++++ .++.+|.. ++.+|++|++++|.....+.. +..+++|++|++++|..-...|.. ..+++|++|++++|
T Consensus 11 ~~l~~s~~-~l~~ip~~-~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGR-GLKEIPRD-IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTS-CCSSCCSC-CCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCC-CcCcCccC-CCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 67888884 57888763 445788888887765444322 456677777777765433222322 34556666666665
Q ss_pred CCCccccccccccCCcccceeeccCCCccccccccccCCCCCCcceEeecC
Q 039990 1084 NIYKPLVKWGFDKFSSLRKHCINRCSDAVSFPEVEKGVILPTSLTLIRISD 1134 (1217)
Q Consensus 1084 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~ 1134 (1217)
......+. .|..+++|++|++++|......|. .+..+++|++|++++
T Consensus 89 ~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~L~~ 135 (192)
T 1w8a_A 89 KIKEISNK-MFLGLHQLKTLNLYDNQISCVMPG---SFEHLNSLTSLNLAS 135 (192)
T ss_dssp CCCEECSS-SSTTCTTCCEEECCSSCCCEECTT---SSTTCTTCCEEECTT
T ss_pred cCCccCHH-HhcCCCCCCEEECCCCcCCeeCHH---HhhcCCCCCEEEeCC
Confidence 54433322 355556666666665433322232 334455555555555
No 152
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.57 E-value=5.1e-10 Score=114.48 Aligned_cols=68 Identities=19% Similarity=0.114 Sum_probs=56.4
Q ss_pred cChhhhcccccCcEEecccccccccccccccccccccEEeecCCccccccCCCCccCcccccccccccccC
Q 039990 506 CLPEAITSLFNLEILILSYCWCLLKLPSSIGNLVNLHHLDIEGADRLCELPLGMKELKCLRTLTDFINVID 576 (1217)
Q Consensus 506 ~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~~~~n~~~ 576 (1217)
.+|..++++.+|++|++++| .+..+| .+.++++|++|++++| .+..+|..+..+++|++|++..|...
T Consensus 39 ~l~~~~~~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N~l~ 106 (198)
T 1ds9_A 39 KMDATLSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYNQIA 106 (198)
T ss_dssp CCHHHHHHTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEEECC
T ss_pred hhhHHHhcCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECcCCcCC
Confidence 55678999999999999999 788899 8999999999999999 78888876666677777766655444
No 153
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.54 E-value=9.5e-08 Score=94.72 Aligned_cols=84 Identities=26% Similarity=0.424 Sum_probs=67.8
Q ss_pred CcceEEEcCCCCcccccccccccccChhhhcccccCcEEeccccccccccccc-ccccccccEEeecCCccccccCCC-C
Q 039990 482 KKLRVLSLEKDNIAEVPISIGCLKCLPEAITSLFNLEILILSYCWCLLKLPSS-IGNLVNLHHLDIEGADRLCELPLG-M 559 (1217)
Q Consensus 482 ~~Lr~L~L~~~~i~~lp~~i~~L~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~-i 559 (1217)
..|++|+|++|.|+.++ |..|.++.+|++|+|++| .+..+|.. +.++++|++|++++| .+..+|.+ +
T Consensus 33 ~~L~~L~Ls~N~l~~~~---------~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~ 101 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLE---------PGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDN-HLKSIPRGAF 101 (174)
T ss_dssp TTCSEEECCSSCCCCCC---------TTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTT
T ss_pred CCCcEEEeCCCCccccC---------HHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCC-ccceeCHHHh
Confidence 67888888888888765 567888888889998888 78888776 578888888888888 78888876 7
Q ss_pred ccCcccccccccccccC
Q 039990 560 KELKCLRTLTDFINVID 576 (1217)
Q Consensus 560 ~~L~~L~~L~~~~n~~~ 576 (1217)
..+++|++|++..|...
T Consensus 102 ~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 102 DNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp TTCTTCSEEECCSSCBC
T ss_pred ccccCCCEEEeCCCCcc
Confidence 88888888887776554
No 154
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.52 E-value=1.6e-07 Score=104.65 Aligned_cols=277 Identities=12% Similarity=0.042 Sum_probs=143.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCcccHHHHHHHHHH
Q 039990 79 PAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDFDILRISKAILE 158 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 158 (1217)
.+++|++..++.+.+.+......+ .....|.|+|.+|+|||++|+++++. ... ..+++..+......++...+..
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~~-~~~~~vll~G~~GtGKT~la~~i~~~-~~~---~~~~~~~~~~~~~~~l~~~l~~ 86 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKARK-EPLEHLLLFGPPGLGKTTLAHVIAHE-LGV---NLRVTSGPAIEKPGDLAAILAN 86 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHC-SCCCCCEEECCTTCCCHHHHHHHHHH-HTC---CEEEECTTTCCSHHHHHHHHTT
T ss_pred HHhhCHHHHHHHHHHHHHHHHccC-CCCCcEEEECCCCCCHHHHHHHHHHH-hCC---CEEEEeccccCChHHHHHHHHH
Confidence 469999999888888775311000 12356889999999999999999875 321 2345554443333333332222
Q ss_pred HhhcCCC-CCCCh----hHHHHHHHHHHHhcC----cCHHHHHHhhcccCCCCCCcEEEEEcCchH-HHHhh--CCCceE
Q 039990 159 SITRSSC-GLTDL----NSVQLKLKEAVFKKN----KSYELWQALKSPFMAGAPGSRIIVTTRSMD-VALKM--GSGKNY 226 (1217)
Q Consensus 159 ~l~~~~~-~~~~~----~~~~~~l~~~l~~~~----~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~-v~~~~--~~~~~~ 226 (1217)
.+..... -.++. ...+..+.+.+.... .... .. ........++.++|.||.... +...+ .....+
T Consensus 87 ~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~-~~--~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i 163 (324)
T 1hqc_A 87 SLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQG-PA--ARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVE 163 (324)
T ss_dssp TCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSS-SS--CCCEEEECCCCEEEEEESCCSSCSCSTTTTCSCEE
T ss_pred hccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhcccc-cc--ccccccCCCCEEEEEeCCCcccCCHHHHhcccEEE
Confidence 1211110 01111 123333443333220 0000 00 000000112456666665432 11111 112578
Q ss_pred eccCCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhccCCchhHHHHHHHhhcC--------CChhHHHHHHhhcc
Q 039990 227 ELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGLPLAARALGGLLRSK--------QRVDEWRAILNSKI 298 (1217)
Q Consensus 227 ~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~--------~~~~~w~~~~~~~~ 298 (1217)
++.+++.+|..+++.+.+.... . .-..+..+.+++.++|.|-.+..+...+... -+.+....+...
T Consensus 164 ~l~~~~~~e~~~~l~~~~~~~~-~---~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~-- 237 (324)
T 1hqc_A 164 HLEYYTPEELAQGVMRDARLLG-V---RITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAA-- 237 (324)
T ss_dssp ECCCCCHHHHHHHHHHHHHTTT-C---CCCHHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHHH--
T ss_pred ecCCCCHHHHHHHHHHHHHhcC-C---CCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH--
Confidence 9999999999999988764322 1 1224678899999999998777665443211 112333333322
Q ss_pred CCCCCCCCchHHHHHhhcCCChhHHHHHHHhh-cCCCC----------cccChHHHHH----HHHHhCCcccccccccHH
Q 039990 299 WDLEDEIEIPSVLKLSYHHLPSHLKRCFAYCA-ILPKD----------YEFQEEELVL----LWIAEGFIQQSKYSKQLE 363 (1217)
Q Consensus 299 ~~~~~~~~i~~~l~~sy~~L~~~~k~~f~~~~-~fp~~----------~~i~~~~li~----~w~~~g~i~~~~~~~~~~ 363 (1217)
+...+..++...+..+..+. .|..+ ..+++..+.+ +-+..|++.....+....
T Consensus 238 ------------~~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~l~~~~i~~~li~~~~~g~~~~ 305 (324)
T 1hqc_A 238 ------------LGLDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEPYLIRQGLLKRTPRGRVPT 305 (324)
T ss_dssp ------------HTCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHHTHHHHHHTTSEEEETTEEEEC
T ss_pred ------------hcccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhHHHHHhcchhcCCccceec
Confidence 11223455655666555433 23222 1233333332 356678887666667778
Q ss_pred HHHHHHHH-HHHhccCCcc
Q 039990 364 DWGSEYFH-DLLSRSMFQK 381 (1217)
Q Consensus 364 ~~~~~~l~-~L~~~sl~~~ 381 (1217)
+.|.+|++ ++.+|+++|+
T Consensus 306 ~~~~~~~~~~~~~~~~~~~ 324 (324)
T 1hqc_A 306 ELAYRHLGYPPPVGPLLEP 324 (324)
T ss_dssp HHHHHHTTCCCCC------
T ss_pred HHHHHHHhcCCCCCCCCCC
Confidence 88888887 8888888874
No 155
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.48 E-value=1.6e-07 Score=92.69 Aligned_cols=84 Identities=27% Similarity=0.370 Sum_probs=68.3
Q ss_pred CcceEEEcCCCCcccccccccccccChhhhcccccCcEEeccccccccccccc-ccccccccEEeecCCccccccCCC-C
Q 039990 482 KKLRVLSLEKDNIAEVPISIGCLKCLPEAITSLFNLEILILSYCWCLLKLPSS-IGNLVNLHHLDIEGADRLCELPLG-M 559 (1217)
Q Consensus 482 ~~Lr~L~L~~~~i~~lp~~i~~L~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~-i 559 (1217)
+.|++|+|++|.|+.++ |..|.++.+|++|+|++| .+..+|.. +.++++|++|++++| .+..+|.+ +
T Consensus 30 ~~l~~L~L~~N~i~~~~---------~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~ 98 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLE---------PGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDN-QLKSIPRGAF 98 (170)
T ss_dssp TTCSEEECCSSCCCCCC---------TTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTT
T ss_pred CCCcEEEcCCCcCCccC---------hhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCCC-ccCEeCHHHh
Confidence 67888999999888765 567888889999999988 67788776 588899999999888 78888765 7
Q ss_pred ccCcccccccccccccC
Q 039990 560 KELKCLRTLTDFINVID 576 (1217)
Q Consensus 560 ~~L~~L~~L~~~~n~~~ 576 (1217)
.++++|++|++..|...
T Consensus 99 ~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 99 DNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp TTCTTCCEEECCSSCBC
T ss_pred cCCCCCCEEEeCCCCCC
Confidence 88888888888776554
No 156
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.43 E-value=1.5e-07 Score=93.27 Aligned_cols=94 Identities=15% Similarity=0.132 Sum_probs=77.2
Q ss_pred CccceEccccccccccccccchhhhhhhcCCCCcceEEEcCCCCcccccccccccccChhhhcccccCcEEecccccccc
Q 039990 450 ENLRTFLPIFMEDFFISFCISPMVLSDLLPKCKKLRVLSLEKDNIAEVPISIGCLKCLPEAITSLFNLEILILSYCWCLL 529 (1217)
Q Consensus 450 ~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~lp~~i~~L~~L~~L~L~~~~~l~ 529 (1217)
++|+.|.+.++.. ..+++..|..+++|++|+|++|+|+.+|. ..|.++.+|++|+|++| .+.
T Consensus 33 ~~L~~L~Ls~N~l--------~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~---------~~~~~l~~L~~L~L~~N-~l~ 94 (174)
T 2r9u_A 33 TDKQRLWLNNNQI--------TKLEPGVFDHLVNLQQLYFNSNKLTAIPT---------GVFDKLTQLTQLDLNDN-HLK 94 (174)
T ss_dssp TTCSEEECCSSCC--------CCCCTTTTTTCTTCCEEECCSSCCCCCCT---------TTTTTCTTCCEEECCSS-CCC
T ss_pred CCCcEEEeCCCCc--------cccCHHHhcCCcCCCEEECCCCCCCccCh---------hHhCCcchhhEEECCCC-ccc
Confidence 6788888776643 34556789999999999999999998873 55789999999999999 788
Q ss_pred ccccc-ccccccccEEeecCCccccccCCCCccC
Q 039990 530 KLPSS-IGNLVNLHHLDIEGADRLCELPLGMKEL 562 (1217)
Q Consensus 530 ~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~i~~L 562 (1217)
.+|.. +..+++|++|++++| .+...|.++..|
T Consensus 95 ~l~~~~~~~l~~L~~L~L~~N-~~~c~~~~~~~l 127 (174)
T 2r9u_A 95 SIPRGAFDNLKSLTHIYLYNN-PWDCECRDIMYL 127 (174)
T ss_dssp CCCTTTTTTCTTCSEEECCSS-CBCTTBGGGHHH
T ss_pred eeCHHHhccccCCCEEEeCCC-CcccccccHHHH
Confidence 99886 899999999999999 666666544443
No 157
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.41 E-value=3e-06 Score=88.46 Aligned_cols=178 Identities=15% Similarity=0.098 Sum_probs=104.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhccccCCCC-CeEEEEeCCcccHHHHHHHHH
Q 039990 79 PAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDFK-PKAWVCVSDDFDILRISKAIL 157 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~-~~~wv~~~~~~~~~~~~~~i~ 157 (1217)
.+++||++.++.+.+++.... .+.+.|+|.+|+|||++|+++++......+. ..+.+..+.......+...+.
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKN------IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIK 90 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC------CCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHhCCC------CCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHHH
Confidence 469999999999999987542 1248899999999999999988763222232 233444444444433333332
Q ss_pred HHhhcCCC--------CCCChhHHHHHHHHHHHhcCcCHHHHHHhhcccCCCCCCcEEEEEcCchHHH-H-hhCCCceEe
Q 039990 158 ESITRSSC--------GLTDLNSVQLKLKEAVFKKNKSYELWQALKSPFMAGAPGSRIIVTTRSMDVA-L-KMGSGKNYE 227 (1217)
Q Consensus 158 ~~l~~~~~--------~~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~v~-~-~~~~~~~~~ 227 (1217)
........ -.++.+.+. .+.++.+...+.....+.++|+||+..... . .......++
T Consensus 91 ~~~~~~~~~~~~~~vliiDe~~~l~-------------~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~ 157 (226)
T 2chg_A 91 EFARTAPIGGAPFKIIFLDEADALT-------------ADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFR 157 (226)
T ss_dssp HHHTSCCSTTCSCEEEEEETGGGSC-------------HHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEE
T ss_pred HHhcccCCCccCceEEEEeChhhcC-------------HHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceee
Confidence 22211100 011111111 122233333333334577888888765321 1 112234889
Q ss_pred ccCCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhccCCchhHHHHHH
Q 039990 228 LKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGLPLAARALGG 279 (1217)
Q Consensus 228 l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~ 279 (1217)
+.+++.++..+++.+.+...+. . -..+..+.|++.++|.|..+..+..
T Consensus 158 ~~~~~~~~~~~~l~~~~~~~~~-~---~~~~~~~~l~~~~~g~~r~l~~~l~ 205 (226)
T 2chg_A 158 FKPVPKEAMKKRLLEICEKEGV-K---ITEDGLEALIYISGGDFRKAINALQ 205 (226)
T ss_dssp CCCCCHHHHHHHHHHHHHHHTC-C---BCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 9999999999999887643211 1 1245678899999999986554433
No 158
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.38 E-value=9e-07 Score=87.33 Aligned_cols=104 Identities=20% Similarity=0.235 Sum_probs=76.5
Q ss_pred CcceEeeccCCCccccCCCCCCCCCCeEEecCCCCCccccccccccCCcccceeeccCCCccccccccccCCCCCCcceE
Q 039990 1051 SLQLLTLIECPGIVFFPEEGLSTNLTDLEISGDNIYKPLVKWGFDKFSSLRKHCINRCSDAVSFPEVEKGVILPTSLTLI 1130 (1217)
Q Consensus 1051 ~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L 1130 (1217)
+.+.++++++ .+..+|. ..+++|++|++++|......+. .|..+++|++|++++|. +..++. ..|..+++|++|
T Consensus 10 ~~~~l~~s~n-~l~~ip~-~~~~~l~~L~L~~N~i~~~~~~-~~~~l~~L~~L~Ls~N~-l~~l~~--~~f~~l~~L~~L 83 (170)
T 3g39_A 10 SGTTVDCSGK-SLASVPT-GIPTTTQVLYLYDNQITKLEPG-VFDRLTQLTRLDLDNNQ-LTVLPA--GVFDKLTQLTQL 83 (170)
T ss_dssp ETTEEECTTS-CCSSCCS-CCCTTCSEEECCSSCCCCCCTT-TTTTCTTCSEEECCSSC-CCCCCT--TTTTTCTTCCEE
T ss_pred CCCEEEeCCC-CcCccCc-cCCCCCcEEEcCCCcCCccChh-hhcCcccCCEEECCCCC-cCccCh--hhccCCCCCCEE
Confidence 3567777763 4556664 3457888888888876655443 57888888888888864 556654 345677888899
Q ss_pred eecCCCCCcccCccccCCccccccccccccc
Q 039990 1131 RISDFPKLERLSSKGFHYLLSLEQLKVSSCP 1161 (1217)
Q Consensus 1131 ~l~~c~~l~~l~~~~~~~l~~L~~L~l~~c~ 1161 (1217)
++++ |+++.++...+.++++|++|++++|+
T Consensus 84 ~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 84 SLND-NQLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp ECCS-SCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ECCC-CccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 9888 78888886668888889999988884
No 159
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.26 E-value=5.9e-05 Score=86.09 Aligned_cols=77 Identities=12% Similarity=0.166 Sum_probs=40.8
Q ss_pred CCccEEeecCCCCCccc-ccccccccCcceEeeccCCCccccccccCCCCcccEEEEcCCCCCccccccCCCCCCcceEE
Q 039990 932 VTLKCIQIEDCSNFKVL-TSECQLSVAVEELTIDSCSNIESIAERFHDDACLRSIRLSYCKNLKSLPKGLNNLSHLHRRS 1010 (1217)
Q Consensus 932 ~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~ 1010 (1217)
.+|+.+.+.. .+..+ ...+.++..|+.+.+.+ .+..+....+...+|+.+.+... ....-...+..+.++....
T Consensus 137 ~~L~~i~lp~--~~~~I~~~~F~~c~~L~~i~~~~--~~~~I~~~aF~~~~l~~i~ip~~-~~~i~~~af~~c~~l~~~~ 211 (394)
T 4gt6_A 137 EELDTVTIPE--GVTSVADGMFSYCYSLHTVTLPD--SVTAIEERAFTGTALTQIHIPAK-VTRIGTNAFSECFALSTIT 211 (394)
T ss_dssp TTCCEEECCT--TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCCCSEEEECTT-CCEECTTTTTTCTTCCEEE
T ss_pred cccccccccc--eeeeecccceecccccccccccc--eeeEeccccccccceeEEEECCc-ccccccchhhhccccceec
Confidence 3455555532 12222 33455667777777754 35555554445567777777542 1222234556666666665
Q ss_pred ecC
Q 039990 1011 IQG 1013 (1217)
Q Consensus 1011 l~~ 1013 (1217)
...
T Consensus 212 ~~~ 214 (394)
T 4gt6_A 212 SDS 214 (394)
T ss_dssp ECC
T ss_pred ccc
Confidence 543
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.24 E-value=0.00015 Score=82.42 Aligned_cols=113 Identities=12% Similarity=0.112 Sum_probs=73.2
Q ss_pred CCCCCCcceEeeccCCCccccCCC--CCCCCCCeEEecCCCCCccccccccccCCcccceeeccCCCccccccccccCCC
Q 039990 1046 TGKLSSLQLLTLIECPGIVFFPEE--GLSTNLTDLEISGDNIYKPLVKWGFDKFSSLRKHCINRCSDAVSFPEVEKGVIL 1123 (1217)
Q Consensus 1046 ~~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 1123 (1217)
+.++.+|+.+.+.. .+..+... ..+.+|+.+.+... +..++..+|..+++|+.+.+.+ ..++.++. ..|..
T Consensus 236 f~~~~~L~~i~lp~--~v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L~~i~l~~-~~i~~I~~--~aF~~ 308 (379)
T 4h09_A 236 FYGMKALDEIAIPK--NVTSIGSFLLQNCTALKTLNFYAK--VKTVPYLLCSGCSNLTKVVMDN-SAIETLEP--RVFMD 308 (379)
T ss_dssp TTTCSSCCEEEECT--TCCEECTTTTTTCTTCCEEEECCC--CSEECTTTTTTCTTCCEEEECC-TTCCEECT--TTTTT
T ss_pred ccCCccceEEEcCC--CccEeCccccceeehhcccccccc--ceeccccccccccccccccccc-cccceehh--hhhcC
Confidence 35667777777754 24444433 23566777777542 4445555677888888888865 34555554 56777
Q ss_pred CCCcceEeecCCCCCcccCccccCCcccccccccccccCcccCCCC
Q 039990 1124 PTSLTLIRISDFPKLERLSSKGFHYLLSLEQLKVSSCPNFTSFPEA 1169 (1217)
Q Consensus 1124 ~~~L~~L~l~~c~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~lp~~ 1169 (1217)
+.+|+.+.|.+ .++.|...+|.++++|+.+.+..+ ++.|...
T Consensus 309 c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip~~--v~~I~~~ 350 (379)
T 4h09_A 309 CVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYPKS--ITLIESG 350 (379)
T ss_dssp CTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCCTT--CCEECTT
T ss_pred CCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEECCc--cCEEchh
Confidence 88888888864 577777677788888888777543 5555543
No 161
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.16 E-value=2.4e-06 Score=96.00 Aligned_cols=91 Identities=19% Similarity=0.154 Sum_probs=73.9
Q ss_pred hhhhcCCCCcceEEEcCC-CCcccccccccccccChhhhcccccCcEEecccccccccccc-cccccccccEEeecCCcc
Q 039990 474 LSDLLPKCKKLRVLSLEK-DNIAEVPISIGCLKCLPEAITSLFNLEILILSYCWCLLKLPS-SIGNLVNLHHLDIEGADR 551 (1217)
Q Consensus 474 ~~~~~~~l~~Lr~L~L~~-~~i~~lp~~i~~L~~lp~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~ 551 (1217)
+|. |..+.+|++|+|++ |.++.+| |..|+.|.+|++|+|++| .+..+|. .|.+|++|++|+|++| .
T Consensus 24 ip~-l~~~~~L~~L~l~~~n~l~~~~---------~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N-~ 91 (347)
T 2ifg_A 24 LHH-LPGAENLTELYIENQQHLQHLE---------LRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFN-A 91 (347)
T ss_dssp TTT-SCSCSCCSEEECCSCSSCCEEC---------GGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSS-C
T ss_pred cCC-CCCCCCeeEEEccCCCCCCCcC---------hhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCC-c
Confidence 344 88889999999996 9999877 477999999999999999 6777765 5799999999999999 8
Q ss_pred ccccCCCCccCcccccccccccccC
Q 039990 552 LCELPLGMKELKCLRTLTDFINVID 576 (1217)
Q Consensus 552 l~~lp~~i~~L~~L~~L~~~~n~~~ 576 (1217)
+..+|.++.....|+.|++..|...
T Consensus 92 l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 92 LESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp CSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred cceeCHHHcccCCceEEEeeCCCcc
Confidence 8999876544434888887766544
No 162
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.14 E-value=7.3e-06 Score=91.06 Aligned_cols=177 Identities=18% Similarity=0.178 Sum_probs=103.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhccccCCCC-CeEEEEeCCcccHHHHHHHHH
Q 039990 79 PAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDFK-PKAWVCVSDDFDILRISKAIL 157 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~-~~~wv~~~~~~~~~~~~~~i~ 157 (1217)
.+++|++..++.+.+++.... .+.+.|+|++|+|||++|+.+++......+. ..+++..+....... .++++
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-i~~~~ 93 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGN------MPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDV-VRNQI 93 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCC------CCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHH-HHTHH
T ss_pred HHHHCCHHHHHHHHHHHHcCC------CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHH-HHHHH
Confidence 469999999999999987542 2238899999999999999998763122222 234444444333322 23333
Q ss_pred HHhhcC--CC--C------CCChhHHHHHHHHHHHhcCcCHHHHHHhhcccCCCCCCcEEEEEcCchHH-HHh-hCCCce
Q 039990 158 ESITRS--SC--G------LTDLNSVQLKLKEAVFKKNKSYELWQALKSPFMAGAPGSRIIVTTRSMDV-ALK-MGSGKN 225 (1217)
Q Consensus 158 ~~l~~~--~~--~------~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~v-~~~-~~~~~~ 225 (1217)
+.+... .. . .++.+.+ ....++.+...+.....++++|+||+...- ... ......
T Consensus 94 ~~~~~~~~~~~~~~~~viiiDe~~~l-------------~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~ 160 (323)
T 1sxj_B 94 KHFAQKKLHLPPGKHKIVILDEADSM-------------TAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAI 160 (323)
T ss_dssp HHHHHBCCCCCTTCCEEEEEESGGGS-------------CHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEE
T ss_pred HHHHhccccCCCCCceEEEEECcccC-------------CHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceE
Confidence 333210 00 0 0111111 112233333333333457788888876431 111 123358
Q ss_pred EeccCCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhccCCch-hHHHHHH
Q 039990 226 YELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGLPL-AARALGG 279 (1217)
Q Consensus 226 ~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~~~ 279 (1217)
+++.+++.++..+++...+...+ .. -..+.++.|++.++|.|. |+..+..
T Consensus 161 i~~~~~~~~~~~~~l~~~~~~~~-~~---~~~~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 161 LRYSKLSDEDVLKRLLQIIKLED-VK---YTNDGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHT-CC---BCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred EeecCCCHHHHHHHHHHHHHHcC-CC---CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 99999999999999988763211 11 124567889999999995 4444443
No 163
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.07 E-value=0.00056 Score=77.88 Aligned_cols=102 Identities=18% Similarity=0.236 Sum_probs=52.2
Q ss_pred CCCCCeEEecCCCCCccccccccccCCcccceeeccCCCccccccccccCCCCCCcceEeecCCCCCcccCccccCCccc
Q 039990 1072 STNLTDLEISGDNIYKPLVKWGFDKFSSLRKHCINRCSDAVSFPEVEKGVILPTSLTLIRISDFPKLERLSSKGFHYLLS 1151 (1217)
Q Consensus 1072 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~ 1151 (1217)
+.+|+.+.+.+. ...+...+|.+++.|+.+.+.. .+..++. ..|..+.+|+.+.|.+ .++.|....|.++++
T Consensus 264 c~~L~~i~lp~~--~~~I~~~aF~~c~~L~~i~l~~--~i~~I~~--~aF~~c~~L~~i~lp~--~v~~I~~~aF~~C~~ 335 (394)
T 4gt6_A 264 CAYLASVKMPDS--VVSIGTGAFMNCPALQDIEFSS--RITELPE--SVFAGCISLKSIDIPE--GITQILDDAFAGCEQ 335 (394)
T ss_dssp CSSCCEEECCTT--CCEECTTTTTTCTTCCEEECCT--TCCEECT--TTTTTCTTCCEEECCT--TCCEECTTTTTTCTT
T ss_pred cccccEEecccc--cceecCcccccccccccccCCC--cccccCc--eeecCCCCcCEEEeCC--cccEehHhHhhCCCC
Confidence 344444444332 1223333455556666555542 3444443 4555556666666653 455555555666666
Q ss_pred ccccccccccCcccCCCC--CCCCccceEeccCC
Q 039990 1152 LEQLKVSSCPNFTSFPEA--GFPSSLLFLDIQGC 1183 (1217)
Q Consensus 1152 L~~L~l~~c~~l~~lp~~--~~~~sL~~L~l~~c 1183 (1217)
|+.+.|.. .++.++.. ..+++|+.+++.+.
T Consensus 336 L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 336 LERIAIPS--SVTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp CCEEEECT--TCCBCCGGGGTTCTTCCEEEESSC
T ss_pred CCEEEECc--ccCEEhHhHhhCCCCCCEEEECCc
Confidence 66666643 25555543 23456666666554
No 164
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.96 E-value=8.1e-06 Score=78.79 Aligned_cols=88 Identities=13% Similarity=0.178 Sum_probs=58.5
Q ss_pred CCccEEeecCCCCCcccccccccccCcceEeeccCCCccccccc-cCC----CCcccEEEEcCCCCCccc-cccCCCCCC
Q 039990 932 VTLKCIQIEDCSNFKVLTSECQLSVAVEELTIDSCSNIESIAER-FHD----DACLRSIRLSYCKNLKSL-PKGLNNLSH 1005 (1217)
Q Consensus 932 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~-~~~----l~~L~~L~L~~c~~l~~l-~~~l~~l~~ 1005 (1217)
..|+.|++++|......-..+.++++|++|++++|..++.-... +.. +++|++|+|++|..+++- -..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 36888888888743333344567888888888888766543211 111 246888888888877653 123556788
Q ss_pred cceEEecCCCCCcc
Q 039990 1006 LHRRSIQGCHNLVS 1019 (1217)
Q Consensus 1006 L~~L~l~~c~~l~~ 1019 (1217)
|++|++++|+.++.
T Consensus 141 L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 141 LKYLFLSDLPGVKE 154 (176)
T ss_dssp CCEEEEESCTTCCC
T ss_pred CCEEECCCCCCCCc
Confidence 88888888877765
No 165
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.93 E-value=3.1e-06 Score=81.70 Aligned_cols=89 Identities=11% Similarity=0.083 Sum_probs=43.9
Q ss_pred CCCeEEecCCCCCccccccccccCCcccceeeccCCCccccccccccCCC----CCCcceEeecCCCCCcccCccccCCc
Q 039990 1074 NLTDLEISGDNIYKPLVKWGFDKFSSLRKHCINRCSDAVSFPEVEKGVIL----PTSLTLIRISDFPKLERLSSKGFHYL 1149 (1217)
Q Consensus 1074 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~----~~~L~~L~l~~c~~l~~l~~~~~~~l 1149 (1217)
+|++|++++|...+. .-..+.++++|++|+|++|..++.-.- ..+.. .++|++|++++|.+++.---..+..+
T Consensus 62 ~L~~LDLs~~~Itd~-GL~~L~~~~~L~~L~L~~C~~ItD~gL--~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~ 138 (176)
T 3e4g_A 62 KIQAIDATDSCIMSI-GFDHMEGLQYVEKIRLCKCHYIEDGCL--ERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF 138 (176)
T ss_dssp CEEEEEEESCCCCGG-GGGGGTTCSCCCEEEEESCTTCCHHHH--HHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGC
T ss_pred eEeEEeCcCCCccHH-HHHHhcCCCCCCEEEeCCCCccCHHHH--HHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcC
Confidence 455555555542211 111345566666666666665543211 11111 23566666666666654332334455
Q ss_pred ccccccccccccCccc
Q 039990 1150 LSLEQLKVSSCPNFTS 1165 (1217)
Q Consensus 1150 ~~L~~L~l~~c~~l~~ 1165 (1217)
++|++|++++|+.++.
T Consensus 139 ~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 139 RNLKYLFLSDLPGVKE 154 (176)
T ss_dssp TTCCEEEEESCTTCCC
T ss_pred CCCCEEECCCCCCCCc
Confidence 6666666666655554
No 166
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.92 E-value=2e-05 Score=88.40 Aligned_cols=101 Identities=13% Similarity=-0.043 Sum_probs=55.5
Q ss_pred EEEccC-cCcccCCCCCCCCCcceEeeccCCCccccCCC--CCCCCCCeEEecCCCCCccccccccccCCcccceeeccC
Q 039990 1032 VSIEDC-DKLKAPLPTGKLSSLQLLTLIECPGIVFFPEE--GLSTNLTDLEISGDNIYKPLVKWGFDKFSSLRKHCINRC 1108 (1217)
Q Consensus 1032 L~l~~~-~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 1108 (1217)
++.+++ .....|. +..+++|++|+|++++.+..++.. ..+++|++|+|++|...... ...|.++++|++|+|++|
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA-PDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEEC-TTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeC-HHHhcCCcCCCEEeCCCC
Confidence 444554 2222333 566667777777654555555533 44667777777776544333 335666777777777764
Q ss_pred CCccccccccccCCCCCCcceEeecCCCCCc
Q 039990 1109 SDAVSFPEVEKGVILPTSLTLIRISDFPKLE 1139 (1217)
Q Consensus 1109 ~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 1139 (1217)
.+..+|. ..+..++ |+.|++.+ |.+.
T Consensus 91 -~l~~~~~--~~~~~~~-L~~l~l~~-N~~~ 116 (347)
T 2ifg_A 91 -ALESLSW--KTVQGLS-LQELVLSG-NPLH 116 (347)
T ss_dssp -CCSCCCS--TTTCSCC-CCEEECCS-SCCC
T ss_pred -ccceeCH--HHcccCC-ceEEEeeC-CCcc
Confidence 3445553 2232333 67777766 4444
No 167
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.89 E-value=0.00014 Score=81.11 Aligned_cols=190 Identities=14% Similarity=0.115 Sum_probs=99.1
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCcccHHHHHHHHH
Q 039990 78 EPAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDFDILRISKAIL 157 (1217)
Q Consensus 78 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 157 (1217)
-.+++|++..++++..++......+ .....|.|+|.+|+|||++|+++++. .... .+.+.......... ...++
T Consensus 28 ~~~iiG~~~~~~~l~~~l~~~~~~~-~~~~~vll~G~~GtGKT~la~~ia~~-~~~~---~~~~~~~~~~~~~~-~~~~~ 101 (338)
T 3pfi_A 28 FDGYIGQESIKKNLNVFIAAAKKRN-ECLDHILFSGPAGLGKTTLANIISYE-MSAN---IKTTAAPMIEKSGD-LAAIL 101 (338)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHTT-SCCCCEEEECSTTSSHHHHHHHHHHH-TTCC---EEEEEGGGCCSHHH-HHHHH
T ss_pred HHHhCChHHHHHHHHHHHHHHHhcC-CCCCeEEEECcCCCCHHHHHHHHHHH-hCCC---eEEecchhccchhH-HHHHH
Confidence 3579999999999888886531100 23356889999999999999999876 3222 22333322222222 22222
Q ss_pred HHhhcCCC-CCCCh----hHHHHHHHHHHHhcCcCHH-HHHHhhcccCCCCCCcEEEEEcCchHH-HHhh--CCCceEec
Q 039990 158 ESITRSSC-GLTDL----NSVQLKLKEAVFKKNKSYE-LWQALKSPFMAGAPGSRIIVTTRSMDV-ALKM--GSGKNYEL 228 (1217)
Q Consensus 158 ~~l~~~~~-~~~~~----~~~~~~l~~~l~~~~~~~~-~~~~l~~~~~~~~~gs~ilvTtR~~~v-~~~~--~~~~~~~l 228 (1217)
........ -.++. ...+..+.+.+.+...... .-..-........++..+|.||..... ...+ .....+++
T Consensus 102 ~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R~~~~i~l 181 (338)
T 3pfi_A 102 TNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRL 181 (338)
T ss_dssp HTCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHTTCSEEEEC
T ss_pred HhccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHhhcCEEeeC
Confidence 22211110 01222 2334444444443311000 000000011111124566666654321 1111 22368999
Q ss_pred cCCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhccCCchhHHHH
Q 039990 229 KHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGLPLAARAL 277 (1217)
Q Consensus 229 ~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 277 (1217)
.+++.++..+++.+.+.... ..-..+..+.|++.+.|.|-.+..+
T Consensus 182 ~~~~~~e~~~il~~~~~~~~----~~~~~~~~~~l~~~~~G~~r~l~~~ 226 (338)
T 3pfi_A 182 EFYKDSELALILQKAALKLN----KTCEEKAALEIAKRSRSTPRIALRL 226 (338)
T ss_dssp CCCCHHHHHHHHHHHHHHTT----CEECHHHHHHHHHTTTTCHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHhcC----CCCCHHHHHHHHHHHCcCHHHHHHH
Confidence 99999999999988764321 1122456788888999998554433
No 168
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=97.84 E-value=7.3e-05 Score=83.04 Aligned_cols=178 Identities=16% Similarity=0.140 Sum_probs=101.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhccccCCCC-CeEEEEeCCcccHHHHHHHHH
Q 039990 79 PAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDFK-PKAWVCVSDDFDILRISKAIL 157 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~-~~~wv~~~~~~~~~~~~~~i~ 157 (1217)
.+++|+++.++.+..++.... ...+.|+|++|+|||++|+.+++......+. ..+.+..+.......+.. .+
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 97 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTGS------MPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVIRE-KV 97 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHTC------CCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTTHH-HH
T ss_pred HHhhCCHHHHHHHHHHHHcCC------CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHHHHH-HH
Confidence 459999999999999887642 2348899999999999999998763112111 233344333222221111 11
Q ss_pred HHhhcCC------C---CCCChhHHHHHHHHHHHhcCcCHHHHHHhhcccCCCCCCcEEEEEcCchHH-HHhh-CCCceE
Q 039990 158 ESITRSS------C---GLTDLNSVQLKLKEAVFKKNKSYELWQALKSPFMAGAPGSRIIVTTRSMDV-ALKM-GSGKNY 226 (1217)
Q Consensus 158 ~~l~~~~------~---~~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~v-~~~~-~~~~~~ 226 (1217)
..+.... . -.++.+.+ ..+.++.+...+.....++++|+||....- .... .....+
T Consensus 98 ~~~~~~~~~~~~~~~vliiDe~~~l-------------~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~ 164 (327)
T 1iqp_A 98 KEFARTKPIGGASFKIIFLDEADAL-------------TQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIF 164 (327)
T ss_dssp HHHHHSCCGGGCSCEEEEEETGGGS-------------CHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEE
T ss_pred HHHHhhCCcCCCCCeEEEEeCCCcC-------------CHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEE
Confidence 1111100 0 00111111 112333343333333457788888876431 1111 122478
Q ss_pred eccCCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhccCCchhHHHHHHH
Q 039990 227 ELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGLPLAARALGGL 280 (1217)
Q Consensus 227 ~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~ 280 (1217)
++.+++.++..+++...+...+ . .-..+..+.|++.++|.|-.+..+...
T Consensus 165 ~~~~l~~~~~~~~l~~~~~~~~-~---~~~~~~~~~l~~~~~g~~r~~~~~l~~ 214 (327)
T 1iqp_A 165 RFRPLRDEDIAKRLRYIAENEG-L---ELTEEGLQAILYIAEGDMRRAINILQA 214 (327)
T ss_dssp ECCCCCHHHHHHHHHHHHHTTT-C---EECHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred EecCCCHHHHHHHHHHHHHhcC-C---CCCHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 9999999999999988764321 1 122456788999999999866544433
No 169
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.83 E-value=7.4e-05 Score=80.29 Aligned_cols=163 Identities=12% Similarity=0.049 Sum_probs=91.4
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhcc-cc---CCCC--CeEEEEeCCcccHHHHH
Q 039990 80 AVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDK-LT---DDFK--PKAWVCVSDDFDILRIS 153 (1217)
Q Consensus 80 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~-~~---~~F~--~~~wv~~~~~~~~~~~~ 153 (1217)
.+.|||+|++++...|...-.. .....+.|+|++|+|||++|+.|+++. .. ...+ ..+.|.+....+...++
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~--~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~ 98 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMS--SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALY 98 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT--TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcC--CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHH
Confidence 3889999999998877653111 344688999999999999999999874 11 1111 24566666777888999
Q ss_pred HHHHHHhhcCCCCCCChhHHHHHHHHHH---Hhc--------Cc---CHHHHHHhhcccCCCCCCcEEEEEcCchH----
Q 039990 154 KAILESITRSSCGLTDLNSVQLKLKEAV---FKK--------NK---SYELWQALKSPFMAGAPGSRIIVTTRSMD---- 215 (1217)
Q Consensus 154 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l---~~~--------~~---~~~~~~~l~~~~~~~~~gs~ilvTtR~~~---- 215 (1217)
..|++++.+.........+....+...+ .++ .+ ..+..-.+............||.++...+
T Consensus 99 ~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~ 178 (318)
T 3te6_A 99 EKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIRE 178 (318)
T ss_dssp HHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHH
T ss_pred HHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccchh
Confidence 9999999654322222222222222222 111 11 11222222111001111223344443321
Q ss_pred -H----HHhhCCCceEeccCCChHHHHHHHHHHHh
Q 039990 216 -V----ALKMGSGKNYELKHLSDDDCWSVFLNHAF 245 (1217)
Q Consensus 216 -v----~~~~~~~~~~~l~~l~~~~~~~lf~~~~~ 245 (1217)
+ ...++ ...+..++++.+|-.+++.+++-
T Consensus 179 ~L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 179 QINIMPSLKAH-FTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp HHHTCHHHHTT-EEEEECCCCCHHHHHHHHHHHHH
T ss_pred hcchhhhccCC-ceEEEeCCCCHHHHHHHHHHHHH
Confidence 1 11221 24789999999999999998863
No 170
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.83 E-value=9.1e-06 Score=90.32 Aligned_cols=35 Identities=17% Similarity=0.127 Sum_probs=18.9
Q ss_pred CCCcceEeecCCCCCcc-----cCccccCCcccccccccccc
Q 039990 1124 PTSLTLIRISDFPKLER-----LSSKGFHYLLSLEQLKVSSC 1160 (1217)
Q Consensus 1124 ~~~L~~L~l~~c~~l~~-----l~~~~~~~l~~L~~L~l~~c 1160 (1217)
+++|++|+++. |.++. ++ .++.++++|+.|++++|
T Consensus 278 ~~~L~~LdLs~-n~L~d~G~~~L~-~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 278 LPQLETMDISA-GVLTDEGARLLL-DHVDKIKHLKFINMKYN 317 (362)
T ss_dssp GGGCSEEECCS-SCCBHHHHHHHH-TTHHHHTTCSEEECCSB
T ss_pred CCCCCEEECCC-CCCChHHHHHHH-hhcccCCcceEEECCCC
Confidence 45566666654 44443 22 23345566666666666
No 171
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.80 E-value=0.0034 Score=70.96 Aligned_cols=127 Identities=11% Similarity=0.124 Sum_probs=94.2
Q ss_pred CCCCCCCCcceEeeccCCCccccCCC--CCCCCCCeEEecCCCCCccccccccccCCcccceeeccCCCccccccccccC
Q 039990 1044 LPTGKLSSLQLLTLIECPGIVFFPEE--GLSTNLTDLEISGDNIYKPLVKWGFDKFSSLRKHCINRCSDAVSFPEVEKGV 1121 (1217)
Q Consensus 1044 ~~~~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 1121 (1217)
.....+.+|+.+.+.. .+..+... ..+.+|+.+.+..+ +..+...+|.++.+|+.+.+.. .+..++. ..|
T Consensus 211 ~~f~~~~~l~~i~~~~--~~~~i~~~~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~--~i~~i~~--~aF 282 (379)
T 4h09_A 211 YGFSYGKNLKKITITS--GVTTLGDGAFYGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYA--KVKTVPY--LLC 282 (379)
T ss_dssp TTTTTCSSCSEEECCT--TCCEECTTTTTTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECC--CCSEECT--TTT
T ss_pred cccccccccceeeecc--ceeEEccccccCCccceEEEcCCC--ccEeCccccceeehhccccccc--cceeccc--ccc
Confidence 3345677888888754 34444444 34678999998764 5556666888999999999965 4666664 577
Q ss_pred CCCCCcceEeecCCCCCcccCccccCCcccccccccccccCcccCCCCC--CCCccceEecc
Q 039990 1122 ILPTSLTLIRISDFPKLERLSSKGFHYLLSLEQLKVSSCPNFTSFPEAG--FPSSLLFLDIQ 1181 (1217)
Q Consensus 1122 ~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~lp~~~--~~~sL~~L~l~ 1181 (1217)
..+++|+.+.+.+ +.++.|+...|.++++|+.+.+.. .++.|+... .+.+|+.+.+.
T Consensus 283 ~~c~~L~~i~l~~-~~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 283 SGCSNLTKVVMDN-SAIETLEPRVFMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp TTCTTCCEEEECC-TTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCC
T ss_pred ccccccccccccc-cccceehhhhhcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEEC
Confidence 8899999999987 678999888899999999999975 377777653 35677777664
No 172
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.72 E-value=0.00028 Score=79.89 Aligned_cols=177 Identities=12% Similarity=0.130 Sum_probs=98.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhcc-ccCCCC-------------------Ce
Q 039990 79 PAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDK-LTDDFK-------------------PK 138 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~-~~~~F~-------------------~~ 138 (1217)
.+++||++.++.+...+.... ....+.|+|.+|+||||+|+.+++.. ....+. ..
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~-----~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDL 90 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTC-----CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSC
T ss_pred hhccCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCce
Confidence 359999999999999987643 23478899999999999999988763 211110 11
Q ss_pred EEEEeCCcccHHHHHHHHHHHhhcCCCC-------CCChhHHHHHHHHHHHhcCcCHHHHHHhhcccCCCCCCcEEEEEc
Q 039990 139 AWVCVSDDFDILRISKAILESITRSSCG-------LTDLNSVQLKLKEAVFKKNKSYELWQALKSPFMAGAPGSRIIVTT 211 (1217)
Q Consensus 139 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~~gs~ilvTt 211 (1217)
+.+........ +..+++.+.+...... .++.+. -+...++.+...+.....+..+|++|
T Consensus 91 ~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~vliiDe~~~-------------l~~~~~~~Ll~~le~~~~~~~~Il~~ 156 (373)
T 1jr3_A 91 IEIDAASRTKV-EDTRDLLDNVQYAPARGRFKVYLIDEVHM-------------LSRHSFNALLKTLEEPPEHVKFLLAT 156 (373)
T ss_dssp EEEETTCSCCS-SCHHHHHHHTTSCCSSSSSEEEEEECGGG-------------SCHHHHHHHHHHHHSCCSSEEEEEEE
T ss_pred EEecccccCCH-HHHHHHHHHHhhccccCCeEEEEEECcch-------------hcHHHHHHHHHHHhcCCCceEEEEEe
Confidence 22222110000 0111122222111000 001110 01233444444443334566777777
Q ss_pred CchH-HHH-hhCCCceEeccCCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhccCCchhHHHHH
Q 039990 212 RSMD-VAL-KMGSGKNYELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGLPLAARALG 278 (1217)
Q Consensus 212 R~~~-v~~-~~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~ 278 (1217)
.... +.. .......+++.+++.++..+++.+.+...+ . .-..+.++.|++.++|.|..+..+.
T Consensus 157 ~~~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~-~---~~~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 157 TDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEH-I---AHEPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp SCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHT-C---CBCHHHHHHHHHHSSSCHHHHHHHH
T ss_pred CChHhCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcC-C---CCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 6433 111 112336889999999999999987653211 1 1124567889999999998776554
No 173
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.68 E-value=4.7e-06 Score=93.62 Aligned_cols=111 Identities=17% Similarity=0.171 Sum_probs=53.8
Q ss_pred CcceEEEcCCCCcccccccccccccChhhhcc-cccCcEEecccccccccc-ccc-ccccccccEEeecCCccccccCC-
Q 039990 482 KKLRVLSLEKDNIAEVPISIGCLKCLPEAITS-LFNLEILILSYCWCLLKL-PSS-IGNLVNLHHLDIEGADRLCELPL- 557 (1217)
Q Consensus 482 ~~Lr~L~L~~~~i~~lp~~i~~L~~lp~~i~~-L~~L~~L~L~~~~~l~~l-p~~-i~~L~~L~~L~l~~~~~l~~lp~- 557 (1217)
+.|+.|+|++|.++..... .+...+.. ..+|++|+|++| .+... ... ...+++|++|++++| .+.....
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~-----~l~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~ 144 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCT-----VVAAVLGSGRHALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACK 144 (372)
T ss_dssp TTCCEEECTTSCCCHHHHH-----HHHHHHSSCSSCEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHH
T ss_pred hhCCEEEecCCCCCHHHHH-----HHHHHHhhCCCCceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHH
Confidence 3566777777776543210 11122222 257777777776 34321 111 234566777777777 4432211
Q ss_pred CC-----ccCcccccccccccccChh--hhHHHHhcCCCCCCeEEEEec
Q 039990 558 GM-----KELKCLRTLTDFINVIDSQ--EANEAMLRGKKDLEVLKLVWS 599 (1217)
Q Consensus 558 ~i-----~~L~~L~~L~~~~n~~~~~--~~~~~~l~~l~~L~~L~l~~~ 599 (1217)
.+ ....+|++|++..|.++.. ......+...++|+.|++++|
T Consensus 145 ~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N 193 (372)
T 3un9_A 145 DLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHT 193 (372)
T ss_dssp HHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTS
T ss_pred HHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCC
Confidence 11 1234566666555544332 122233455566666666444
No 174
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.66 E-value=1.4e-05 Score=89.84 Aligned_cols=138 Identities=13% Similarity=0.140 Sum_probs=76.2
Q ss_pred CCcceEEEcCCCCcccccccccccccChhhhcccccCcEEeccccccccccc-----ccc-cccccccEEeecCCccccc
Q 039990 481 CKKLRVLSLEKDNIAEVPISIGCLKCLPEAITSLFNLEILILSYCWCLLKLP-----SSI-GNLVNLHHLDIEGADRLCE 554 (1217)
Q Consensus 481 l~~Lr~L~L~~~~i~~lp~~i~~L~~lp~~i~~L~~L~~L~L~~~~~l~~lp-----~~i-~~L~~L~~L~l~~~~~l~~ 554 (1217)
...|++|+|++|.++... +..-...+.+|++|+|++| .+.... ..+ ....+|++|++++| .++.
T Consensus 100 ~~~L~~L~Ls~n~l~~~~--------~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n-~l~~ 169 (372)
T 3un9_A 100 RHALDEVNLASCQLDPAG--------LRTLLPVFLRARKLGLQLN-SLGPEACKDLRDLLLHDQCQITTLRLSNN-PLTA 169 (372)
T ss_dssp SSCEEEEECTTCCCCHHH--------HHHTHHHHHTEEEEECCSS-CCCHHHHHHHHHHHHSTTCCCCEEECCSS-CCHH
T ss_pred CCCceEEEecCCCCCHHH--------HHHHHHHHHhccHhhcCCC-CCCHHHHHHHHHHHHhcCCccceeeCCCC-CCCh
Confidence 367888888888775421 0111233557788888887 453322 112 23567888888887 5543
Q ss_pred -----cCCCCccCcccccccccccccChhh--hHHHHhcCCCCCCeEEEEecCCCCchhhHHHHhcccCCCCCccEEEEE
Q 039990 555 -----LPLGMKELKCLRTLTDFINVIDSQE--ANEAMLRGKKDLEVLKLVWSGGPVDELREKNILDMLKPHCNIKRLEII 627 (1217)
Q Consensus 555 -----lp~~i~~L~~L~~L~~~~n~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~ 627 (1217)
++..+..+++|++|++..|.+.... .....+...++|+.|++++|..... ....+...+...++|+.|+++
T Consensus 170 ~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~--g~~~l~~~L~~~~~L~~L~Ls 247 (372)
T 3un9_A 170 AGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDT--AALALARAAREHPSLELLHLY 247 (372)
T ss_dssp HHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHH--HHHHHHHHHHHCSSCCEEECT
T ss_pred HHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHH--HHHHHHHHHHhCCCCCEEecc
Confidence 3344566777888887777655432 2234456666777777765543221 112222333344455555555
Q ss_pred eeC
Q 039990 628 SYG 630 (1217)
Q Consensus 628 ~~~ 630 (1217)
+|.
T Consensus 248 ~N~ 250 (372)
T 3un9_A 248 FNE 250 (372)
T ss_dssp TSS
T ss_pred CCC
Confidence 443
No 175
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.64 E-value=3.8e-05 Score=85.35 Aligned_cols=36 Identities=19% Similarity=0.234 Sum_probs=16.8
Q ss_pred ccccCcceEeeccCCCccccccccCCCCcccEEEEcCCC
Q 039990 953 QLSVAVEELTIDSCSNIESIAERFHDDACLRSIRLSYCK 991 (1217)
Q Consensus 953 ~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~L~~c~ 991 (1217)
..+++|+.|.+++|..+ .++. + .+++|++|+|..|.
T Consensus 169 ~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~ 204 (362)
T 2ra8_A 169 DAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGG 204 (362)
T ss_dssp HTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSB
T ss_pred hcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCC
Confidence 34555666666554222 1221 1 24556666655543
No 176
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.57 E-value=0.00034 Score=77.21 Aligned_cols=177 Identities=14% Similarity=0.109 Sum_probs=100.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhccccCCCC-CeEEEEeCCccc---HHHHHH
Q 039990 79 PAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDFK-PKAWVCVSDDFD---ILRISK 154 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~-~~~wv~~~~~~~---~~~~~~ 154 (1217)
.+++|++..++.+.+++.... ...+.|+|++|+|||++|+.+++......+. ..+.+..+.... +.+...
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERKN------IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIK 90 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTTC------CCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTTTSSHHHH
T ss_pred HHHhCCHHHHHHHHHHHhCCC------CCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChHHHHHHHH
Confidence 469999999998888876532 2238899999999999999988763222222 223344333211 111122
Q ss_pred HHHHHhhcCCC-----CCCChhHHHHHHHHHHHhcCcCHHHHHHhhcccCCCCCCcEEEEEcCchH-HHHh-hCCCceEe
Q 039990 155 AILESITRSSC-----GLTDLNSVQLKLKEAVFKKNKSYELWQALKSPFMAGAPGSRIIVTTRSMD-VALK-MGSGKNYE 227 (1217)
Q Consensus 155 ~i~~~l~~~~~-----~~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~-v~~~-~~~~~~~~ 227 (1217)
.+......... -.++.+. -..+..+.+...+.....+.++|+||.... +... ......++
T Consensus 91 ~~~~~~~~~~~~~~vliiDe~~~-------------l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~ 157 (319)
T 2chq_A 91 EFARTAPIGGAPFKIIFLDEADA-------------LTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFR 157 (319)
T ss_dssp HHHHSCCSSSCCCEEEEEETGGG-------------SCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEEE
T ss_pred HHHhcCCCCCCCceEEEEeCCCc-------------CCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEEE
Confidence 22111000000 0001111 112334555555555456778888876543 1111 12235899
Q ss_pred ccCCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhccCCchhHHHHH
Q 039990 228 LKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGLPLAARALG 278 (1217)
Q Consensus 228 l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~ 278 (1217)
+.+++.++..+++...+...+ . .-..+..+.+++.++|.+-.+....
T Consensus 158 ~~~~~~~~~~~~l~~~~~~~~-~---~i~~~~l~~l~~~~~G~~r~~~~~l 204 (319)
T 2chq_A 158 FKPVPKEAMKKRLLEICEKEG-V---KITEDGLEALIYISGGDFRKAINAL 204 (319)
T ss_dssp CCCCCHHHHHHHHHHHHHTTC-C---CBCHHHHHHHHHTTTTCHHHHHHHH
T ss_pred ecCCCHHHHHHHHHHHHHHcC-C---CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 999999999999988764321 1 1124567888999999887654433
No 177
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.51 E-value=3.5e-05 Score=80.75 Aligned_cols=84 Identities=18% Similarity=0.137 Sum_probs=61.9
Q ss_pred hcCCCCcceEEEcCCCCcccccccccccccChhhhcccccCcEEecccccccccccccccccc--cccEEeecCCccccc
Q 039990 477 LLPKCKKLRVLSLEKDNIAEVPISIGCLKCLPEAITSLFNLEILILSYCWCLLKLPSSIGNLV--NLHHLDIEGADRLCE 554 (1217)
Q Consensus 477 ~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~--~L~~L~l~~~~~l~~ 554 (1217)
....++.|+.|+|++|+|+.++ .+|..+..+++|++|+|++| .+..+. ++..++ +|++|++++|.--..
T Consensus 165 ~~~~l~~L~~L~Ls~N~l~~l~-------~l~~~~~~l~~L~~L~Ls~N-~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~ 235 (267)
T 3rw6_A 165 IEENIPELLSLNLSNNRLYRLD-------DMSSIVQKAPNLKILNLSGN-ELKSER-ELDKIKGLKLEELWLDGNSLCDT 235 (267)
T ss_dssp HHHHCTTCCEEECTTSCCCCCG-------GGTTHHHHSTTCCEEECTTS-CCCSGG-GGGGGTTSCCSEEECTTSTTGGG
T ss_pred HHhhCCCCCEEECCCCCCCCCc-------cchhHHhhCCCCCEEECCCC-ccCCch-hhhhcccCCcceEEccCCcCccc
Confidence 3357889999999999998876 45777889999999999998 677773 466666 999999999943333
Q ss_pred cCC-------CCccCccccccc
Q 039990 555 LPL-------GMKELKCLRTLT 569 (1217)
Q Consensus 555 lp~-------~i~~L~~L~~L~ 569 (1217)
+|. -+..+.+|+.|+
T Consensus 236 ~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 236 FRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp CSSHHHHHHHHHHHCTTCCEES
T ss_pred cCcchhHHHHHHHHCcccCeEC
Confidence 442 144555555554
No 178
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.49 E-value=0.00014 Score=76.68 Aligned_cols=170 Identities=15% Similarity=0.136 Sum_probs=88.5
Q ss_pred Cccccch---hhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCcccHHHHHHH
Q 039990 79 PAVYGRN---EDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDFDILRISKA 155 (1217)
Q Consensus 79 ~~~vGr~---~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 155 (1217)
.+|+|++ ..++.+..+.... ..+.+.|+|.+|+|||++|+.+++.. ......+.|+.+..-.+. ..+
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~------~~~~~ll~G~~G~GKT~la~~l~~~~-~~~~~~~~~~~~~~~~~~---~~~ 97 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGD------GVQAIYLWGPVKSGRTHLIHAACARA-NELERRSFYIPLGIHASI---STA 97 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTC------SCSEEEEECSTTSSHHHHHHHHHHHH-HHTTCCEEEEEGGGGGGS---CGG
T ss_pred hhccCCCCCHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHH-HHcCCeEEEEEHHHHHHH---HHH
Confidence 4577633 4455555555432 23578899999999999999998763 222334667765442211 011
Q ss_pred HHHHhhcCCC-CCCChhHH------HHHHHHHHHhcCcCHHHHHHhhcccCCCCCCcEEEEEcCch---------HHHHh
Q 039990 156 ILESITRSSC-GLTDLNSV------QLKLKEAVFKKNKSYELWQALKSPFMAGAPGSRIIVTTRSM---------DVALK 219 (1217)
Q Consensus 156 i~~~l~~~~~-~~~~~~~~------~~~l~~~l~~~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~---------~v~~~ 219 (1217)
+++.+..... -.++.+.+ ...+...+ ...... ...++|+||+.. .+...
T Consensus 98 ~~~~~~~~~vliiDe~~~~~~~~~~~~~l~~~l-------------~~~~~~--~~~~ii~~~~~~~~~~~~~~~~l~~r 162 (242)
T 3bos_A 98 LLEGLEQFDLICIDDVDAVAGHPLWEEAIFDLY-------------NRVAEQ--KRGSLIVSASASPMEAGFVLPDLVSR 162 (242)
T ss_dssp GGTTGGGSSEEEEETGGGGTTCHHHHHHHHHHH-------------HHHHHH--CSCEEEEEESSCTTTTTCCCHHHHHH
T ss_pred HHHhccCCCEEEEeccccccCCHHHHHHHHHHH-------------HHHHHc--CCCeEEEEcCCCHHHHHHhhhhhhhH
Confidence 1111111100 00111110 11111111 111111 122477777632 22222
Q ss_pred hCCCceEeccCCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhccCCchhHHHH
Q 039990 220 MGSGKNYELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGLPLAARAL 277 (1217)
Q Consensus 220 ~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 277 (1217)
+.....+++++++.++..+++...+.... . .-..+..+.+++.++|.+-.+..+
T Consensus 163 ~~~~~~i~l~~~~~~~~~~~l~~~~~~~~-~---~~~~~~~~~l~~~~~g~~r~l~~~ 216 (242)
T 3bos_A 163 MHWGLTYQLQPMMDDEKLAALQRRAAMRG-L---QLPEDVGRFLLNRMARDLRTLFDV 216 (242)
T ss_dssp HHHSEEEECCCCCGGGHHHHHHHHHHHTT-C---CCCHHHHHHHHHHTTTCHHHHHHH
T ss_pred hhcCceEEeCCCCHHHHHHHHHHHHHHcC-C---CCCHHHHHHHHHHccCCHHHHHHH
Confidence 22236899999999999999988764221 1 122456788899999887666543
No 179
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.29 E-value=0.0012 Score=75.81 Aligned_cols=150 Identities=15% Similarity=0.159 Sum_probs=83.5
Q ss_pred cEEEEEEccCCchHHHHHHHHHhccccCCCC--CeEEEEeCCcccHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHH-
Q 039990 106 FRVIPLVGMGGIGKTTLAQEVYNDKLTDDFK--PKAWVCVSDDFDILRISKAILESITRSSCGLTDLNSVQLKLKEAVF- 182 (1217)
Q Consensus 106 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~- 182 (1217)
...+.|+|.+|+||||||+.+++. ....++ .+++++.. ++..++...+... ... .+.....
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~-l~~~~~~~~v~~v~~~------~~~~~~~~~~~~~-----~~~----~~~~~~~~ 193 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNY-VVQNEPDLRVMYITSE------KFLNDLVDSMKEG-----KLN----EFREKYRK 193 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHH-HHHHCCSSCEEEEEHH------HHHHHHHHHHHTT-----CHH----HHHHHHTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH-HHHhCCCCeEEEeeHH------HHHHHHHHHHHcc-----cHH----HHHHHhcC
Confidence 457889999999999999999886 333332 23455432 2333344333221 111 1111222
Q ss_pred hc----CcCH-------HHHHHhhcccCC-CCCCcEEEEEcCch---------HHHHhhCCCceEeccCCChHHHHHHHH
Q 039990 183 KK----NKSY-------ELWQALKSPFMA-GAPGSRIIVTTRSM---------DVALKMGSGKNYELKHLSDDDCWSVFL 241 (1217)
Q Consensus 183 ~~----~~~~-------~~~~~l~~~~~~-~~~gs~ilvTtR~~---------~v~~~~~~~~~~~l~~l~~~~~~~lf~ 241 (1217)
.. .|+. ...+.+...+.. ...|..||+||... .+...+....++++++++.++..+++.
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~ 273 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIAR 273 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHH
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHH
Confidence 11 1111 122222222211 13467788888762 233344444678999999999999998
Q ss_pred HHHhCCCCCCCCCchhhHHHHHHHhccCCchhHH
Q 039990 242 NHAFEGIDTGTQGNFESTRQRVVAKCKGLPLAAR 275 (1217)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 275 (1217)
+.+.... ...+ .++...|++.++|.+-.+.
T Consensus 274 ~~~~~~~-~~i~---~e~l~~la~~~~gn~R~l~ 303 (440)
T 2z4s_A 274 KMLEIEH-GELP---EEVLNFVAENVDDNLRRLR 303 (440)
T ss_dssp HHHHHHT-CCCC---TTHHHHHHHHCCSCHHHHH
T ss_pred HHHHHcC-CCCC---HHHHHHHHHhcCCCHHHHH
Confidence 8874221 1111 3467788888888875443
No 180
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.24 E-value=0.00014 Score=72.57 Aligned_cols=121 Identities=16% Similarity=0.105 Sum_probs=68.3
Q ss_pred hhhhhcCCCCcceEEEcCCC-CcccccccccccccChhhhcccccCcEEeccccccccc-----ccccccccccccEEee
Q 039990 473 VLSDLLPKCKKLRVLSLEKD-NIAEVPISIGCLKCLPEAITSLFNLEILILSYCWCLLK-----LPSSIGNLVNLHHLDI 546 (1217)
Q Consensus 473 ~~~~~~~~l~~Lr~L~L~~~-~i~~lp~~i~~L~~lp~~i~~L~~L~~L~L~~~~~l~~-----lp~~i~~L~~L~~L~l 546 (1217)
.+...+...+.|++|+|++| .+..-- ...+...+....+|++|+|++| .+.. +...+...++|++|++
T Consensus 27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g-----~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L 100 (185)
T 1io0_A 27 TLKRIQNNDPDLEEVNLNNIMNIPVPT-----LKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNV 100 (185)
T ss_dssp HHHHHHTTCTTCCEEECTTCTTCCHHH-----HHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEEC
T ss_pred HHHHHHhcCCCCCEEEecCCCCCCHHH-----HHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEEC
Confidence 34455667777777777777 665310 0023455666677777777777 4432 3444555667777777
Q ss_pred cCCccccc-----cCCCCccCcccccccc--cccccChhh--hHHHHhcCCCCCCeEEEEecC
Q 039990 547 EGADRLCE-----LPLGMKELKCLRTLTD--FINVIDSQE--ANEAMLRGKKDLEVLKLVWSG 600 (1217)
Q Consensus 547 ~~~~~l~~-----lp~~i~~L~~L~~L~~--~~n~~~~~~--~~~~~l~~l~~L~~L~l~~~~ 600 (1217)
++| .+.. +...+...++|++|++ ..|.+.... .....+...+.|+.|++.++.
T Consensus 101 ~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 101 ESN-FISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp CSS-CCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred cCC-cCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 777 4442 2334555556666666 445444332 223344555666666665443
No 181
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.20 E-value=0.0058 Score=65.82 Aligned_cols=183 Identities=15% Similarity=0.101 Sum_probs=91.3
Q ss_pred CCccccchhhHHHHHHHHhcCCCC-------CCCCcEEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCcc---
Q 039990 78 EPAVYGRNEDKARILDMVLKNDPS-------DAANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDF--- 147 (1217)
Q Consensus 78 ~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~~--- 147 (1217)
-.+++|.++.++++.+.+...-.. +....+.+.|+|.+|+|||++|+++++. .... .+.+..+.-.
T Consensus 16 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~-~~~~---~~~v~~~~~~~~~ 91 (285)
T 3h4m_A 16 YEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE-TNAT---FIRVVGSELVKKF 91 (285)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH-TTCE---EEEEEGGGGCCCS
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH-hCCC---EEEEehHHHHHhc
Confidence 356999999999998877431000 0012356889999999999999999876 2221 2223322211
Q ss_pred --cHHHHHHHHHHHhhcCCC---CCCChhHHHHHHHHHHHhcC-----cCH---HHHHHhhcccC--CCCCCcEEEEEcC
Q 039990 148 --DILRISKAILESITRSSC---GLTDLNSVQLKLKEAVFKKN-----KSY---ELWQALKSPFM--AGAPGSRIIVTTR 212 (1217)
Q Consensus 148 --~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~~l~~~~-----~~~---~~~~~l~~~~~--~~~~gs~ilvTtR 212 (1217)
........+......... -.++.+.+. ..+. ... .....+...+. ....+..||.||.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~-------~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn 164 (285)
T 3h4m_A 92 IGEGASLVKDIFKLAKEKAPSIIFIDEIDAIA-------AKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATN 164 (285)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEETTHHHH-------BCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECS
T ss_pred cchHHHHHHHHHHHHHHcCCeEEEEECHHHhc-------ccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCC
Confidence 122333333333222111 011222110 0000 000 01111111111 1224667888887
Q ss_pred chHHHH--hh---CCCceEeccCCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhccCC-chhHHH
Q 039990 213 SMDVAL--KM---GSGKNYELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGL-PLAARA 276 (1217)
Q Consensus 213 ~~~v~~--~~---~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-PLai~~ 276 (1217)
...... .. .-...+.++..+.++..+++...+.... ... ......+++...|. |-.|..
T Consensus 165 ~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~-~~~----~~~~~~l~~~~~g~~~~~i~~ 229 (285)
T 3h4m_A 165 RPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMN-LAE----DVNLEEIAKMTEGCVGAELKA 229 (285)
T ss_dssp CGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSC-BCT----TCCHHHHHHHCTTCCHHHHHH
T ss_pred CchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCC-CCC----cCCHHHHHHHcCCCCHHHHHH
Confidence 543211 11 1224789999999999999988864321 111 12256777777764 434443
No 182
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.19 E-value=0.00092 Score=74.93 Aligned_cols=174 Identities=12% Similarity=0.109 Sum_probs=95.9
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhcc-ccCCCC-CeEEEEeCCcccHHHHHHHH
Q 039990 79 PAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDK-LTDDFK-PKAWVCVSDDFDILRISKAI 156 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~-~~~~F~-~~~wv~~~~~~~~~~~~~~i 156 (1217)
.+++|+++.++.+..++.... ...+.|+|++|+||||+|+.+++.. ....+. ..+.+..+.......+ .+.
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 109 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSAN------LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIV-REK 109 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTT------CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHH-TTH
T ss_pred HHhhCCHHHHHHHHHHHhcCC------CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHH-HHH
Confidence 569999999999999886542 1238899999999999999988762 111122 2333443332222222 222
Q ss_pred HHHhhcCCC-C------------------CCChhHHHHHHHHHHHhcCcCHHHHHHhhcccCCCCCCcEEEEEcCchH-H
Q 039990 157 LESITRSSC-G------------------LTDLNSVQLKLKEAVFKKNKSYELWQALKSPFMAGAPGSRIIVTTRSMD-V 216 (1217)
Q Consensus 157 ~~~l~~~~~-~------------------~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~-v 216 (1217)
...+..... . .++.+.+ .....+.+...+.......++|++|.... +
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l-------------~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l 176 (353)
T 1sxj_D 110 VKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSM-------------TADAQSALRRTMETYSGVTRFCLICNYVTRI 176 (353)
T ss_dssp HHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGS-------------CHHHHHHHHHHHHHTTTTEEEEEEESCGGGS
T ss_pred HHHHhhhcccccchhhcccCCCCCceEEEEECCCcc-------------CHHHHHHHHHHHHhcCCCceEEEEeCchhhC
Confidence 222211100 0 0111111 11222333333322334566777765432 1
Q ss_pred HHhh-CCCceEeccCCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhccCCchhHHH
Q 039990 217 ALKM-GSGKNYELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGLPLAARA 276 (1217)
Q Consensus 217 ~~~~-~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~ 276 (1217)
.... .....+++.+++.++..+.+...+.... . .-..+..+.|++.++|.|-.+..
T Consensus 177 ~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~~~~-~---~i~~~~l~~l~~~~~G~~r~~~~ 233 (353)
T 1sxj_D 177 IDPLASQCSKFRFKALDASNAIDRLRFISEQEN-V---KCDDGVLERILDISAGDLRRGIT 233 (353)
T ss_dssp CHHHHHHSEEEECCCCCHHHHHHHHHHHHHTTT-C---CCCHHHHHHHHHHTSSCHHHHHH
T ss_pred cchhhccCceEEeCCCCHHHHHHHHHHHHHHhC-C---CCCHHHHHHHHHHcCCCHHHHHH
Confidence 1111 1124789999999999999988764321 1 11245788999999999876443
No 183
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.18 E-value=0.0026 Score=69.60 Aligned_cols=162 Identities=14% Similarity=0.048 Sum_probs=79.2
Q ss_pred ccccchhhHHHHHHHHhcCC---------CCCCCCcEEEEEEccCCchHHHHHHHHHhcc-ccCCCCCeEEEEeCCcc--
Q 039990 80 AVYGRNEDKARILDMVLKND---------PSDAANFRVIPLVGMGGIGKTTLAQEVYNDK-LTDDFKPKAWVCVSDDF-- 147 (1217)
Q Consensus 80 ~~vGr~~~~~~l~~~L~~~~---------~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~-~~~~F~~~~wv~~~~~~-- 147 (1217)
+++|.+..++.+.+.+.... -........|.|+|.+|+|||++|+.+++.. ........-++.+....
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~ 111 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLV 111 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTC
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhh
Confidence 58899888888876654210 0000334578899999999999999887763 22222222233332110
Q ss_pred -----cHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhcCcCHHHHHHhhcccCCCCCCcEEEEEcCchHHHHh--h
Q 039990 148 -----DILRISKAILESITRSSCGLTDLNSVQLKLKEAVFKKNKSYELWQALKSPFMAGAPGSRIIVTTRSMDVALK--M 220 (1217)
Q Consensus 148 -----~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~v~~~--~ 220 (1217)
........+++......--.++.+.+... -.+.....+....+...+.....+..||.||........ .
T Consensus 112 ~~~~g~~~~~~~~~~~~~~~~vl~iDEid~l~~~----~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~ 187 (309)
T 3syl_A 112 GQYIGHTAPKTKEVLKRAMGGVLFIDEAYYLYRP----DNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQS 187 (309)
T ss_dssp CSSTTCHHHHHHHHHHHHTTSEEEEETGGGSCCC----C---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHH
T ss_pred hhcccccHHHHHHHHHhcCCCEEEEEChhhhccC----CCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhh
Confidence 01111122222221110000111100000 000000222233343333334456778888865332111 0
Q ss_pred ------CCCceEeccCCChHHHHHHHHHHHh
Q 039990 221 ------GSGKNYELKHLSDDDCWSVFLNHAF 245 (1217)
Q Consensus 221 ------~~~~~~~l~~l~~~~~~~lf~~~~~ 245 (1217)
.....+++++++.++-.+++...+.
T Consensus 188 ~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 188 NPGFRSRIAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp STTHHHHEEEEEEECCCCHHHHHHHHHHHHH
T ss_pred CHHHHHhCCeEEEcCCcCHHHHHHHHHHHHH
Confidence 1126889999999999999988764
No 184
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.14 E-value=0.0015 Score=76.82 Aligned_cols=190 Identities=13% Similarity=0.055 Sum_probs=94.6
Q ss_pred CccccchhhHHHHHHHHhcCC-----------CCCCCCcEEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCcc
Q 039990 79 PAVYGRNEDKARILDMVLKND-----------PSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDF 147 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~-----------~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~~ 147 (1217)
.+++|+++.++++.+++.... ..+.+..+.+.|+|++|+|||++|+.+++. . .+ .++.+.++...
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~-l--~~-~~i~in~s~~~ 114 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQE-L--GY-DILEQNASDVR 114 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHH-T--TC-EEEEECTTSCC
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHH-c--CC-CEEEEeCCCcc
Confidence 579999999999999986510 000013468999999999999999999886 3 12 13344444433
Q ss_pred cHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhc---CcCH--------HHHHHhhcccCCCCCCcEEEEEcCchH-
Q 039990 148 DILRISKAILESITRSSCGLTDLNSVQLKLKEAVFKK---NKSY--------ELWQALKSPFMAGAPGSRIIVTTRSMD- 215 (1217)
Q Consensus 148 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~---~~~~--------~~~~~l~~~~~~~~~gs~ilvTtR~~~- 215 (1217)
... +....+...........-...........-... +|+. ..+..+...+.. .+..||+++....
T Consensus 115 ~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~~~~~~ 191 (516)
T 1sxj_A 115 SKT-LLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILICNERNL 191 (516)
T ss_dssp CHH-HHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEESCTTS
T ss_pred hHH-HHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEEcCCCC
Confidence 322 222222211110000000000000000000000 1111 112222222221 1233555544322
Q ss_pred --HHHhhCCCceEeccCCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhccC-CchhHHHHHH
Q 039990 216 --VALKMGSGKNYELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKG-LPLAARALGG 279 (1217)
Q Consensus 216 --v~~~~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~PLai~~~~~ 279 (1217)
+.........+++++++.++..+.+.+.+..... .. ..+....|++.++| ++-|+..+..
T Consensus 192 ~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~-~i---~~~~l~~la~~s~GdiR~~i~~L~~ 254 (516)
T 1sxj_A 192 PKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKF-KL---DPNVIDRLIQTTRGDIRQVINLLST 254 (516)
T ss_dssp STTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTC-CC---CTTHHHHHHHHTTTCHHHHHHHHTH
T ss_pred ccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 2111123357899999999999998877643221 11 13467889999988 5556665543
No 185
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.08 E-value=0.014 Score=62.26 Aligned_cols=48 Identities=23% Similarity=0.316 Sum_probs=34.7
Q ss_pred CccccchhhHHHHHH-------HHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 79 PAVYGRNEDKARILD-------MVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~-------~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
..++|.+...+++.+ .+..... ...+.|.|+|.+|+|||++|+++++.
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~---~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDR---TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSS---CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCC---CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 357788777666665 3322111 44578999999999999999999876
No 186
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.07 E-value=0.0004 Score=70.03 Aligned_cols=46 Identities=24% Similarity=0.413 Sum_probs=38.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhcc
Q 039990 79 PAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDK 130 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 130 (1217)
..++||+++++++.+.+.... .+.+.|+|.+|+|||++|+++++..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRRT------KNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS------SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhcCC------CCceEEECCCCCCHHHHHHHHHHHH
Confidence 459999999999999987632 2467899999999999999988763
No 187
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.06 E-value=0.00056 Score=64.93 Aligned_cols=60 Identities=15% Similarity=-0.023 Sum_probs=40.4
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCC
Q 039990 80 AVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSD 145 (1217)
Q Consensus 80 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~ 145 (1217)
+++|+...+.++.+.+..-... ..-|.|+|.+|+|||++|+.+++...+...+.+ +.++.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~----~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v--~~~~~ 61 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSET----DIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV--YRELT 61 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTC----CSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE--EEECC
T ss_pred CceeCCHHHHHHHHHHHHHhCC----CCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE--EECCC
Confidence 5899999999998887543211 134779999999999999999875322223333 65544
No 188
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.03 E-value=0.0082 Score=66.79 Aligned_cols=191 Identities=12% Similarity=0.026 Sum_probs=93.4
Q ss_pred CccccchhhHHHHHHHHhcC----CCC--CCCCcEEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCccc----
Q 039990 79 PAVYGRNEDKARILDMVLKN----DPS--DAANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDFD---- 148 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~----~~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~~~---- 148 (1217)
.+++|.++.++++.+.+... ..- .....+.|.|+|.+|+|||++|+++++. ... ..+.+..+.-..
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~-~~~---~~~~i~~~~l~~~~~g 159 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQ-SGA---TFFSISASSLTSKWVG 159 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHH-TTC---EEEEEEGGGGCCSSTT
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHH-cCC---eEEEEehHHhhccccc
Confidence 46899999999988877420 000 0023467889999999999999999876 221 123444332211
Q ss_pred -HHHHHHHHHHHhhcCCC---CCCChhHHHHHHHHHHHhcCcCHHHHHHhhcccC----CCCCCcEEEEEcCchH-HHHh
Q 039990 149 -ILRISKAILESITRSSC---GLTDLNSVQLKLKEAVFKKNKSYELWQALKSPFM----AGAPGSRIIVTTRSMD-VALK 219 (1217)
Q Consensus 149 -~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~----~~~~gs~ilvTtR~~~-v~~~ 219 (1217)
.....+.+......... -.++.+.+...-.. ............+...+. ....+..||.||.... +...
T Consensus 160 ~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~--~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~ 237 (357)
T 3d8b_A 160 EGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGD--GEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEA 237 (357)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC--------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHH
T ss_pred hHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCC--CcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHH
Confidence 22223333332221111 01122211000000 000000011111111111 1123455666665432 1111
Q ss_pred h--CCCceEeccCCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhccC-CchhHHHHHH
Q 039990 220 M--GSGKNYELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKG-LPLAARALGG 279 (1217)
Q Consensus 220 ~--~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~PLai~~~~~ 279 (1217)
. .-...+.+...+.++..+++...+.... . .-..+..+.|++.+.| .+-+|..+..
T Consensus 238 l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~-~---~l~~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 238 ARRRLVKRLYIPLPEASARKQIVINLMSKEQ-C---CLSEEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp HHTTCCEEEECCCCCHHHHHHHHHHHHHTSC-B---CCCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHhhCceEEEeCCcCHHHHHHHHHHHHhhcC-C---CccHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 1 2235778899999999998887763321 1 1123467788888888 4555555543
No 189
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.01 E-value=0.0067 Score=64.36 Aligned_cols=191 Identities=13% Similarity=0.060 Sum_probs=88.6
Q ss_pred CccccchhhHHHHHHHHh---cCCC---CCCCCcEEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCcc-----
Q 039990 79 PAVYGRNEDKARILDMVL---KNDP---SDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDF----- 147 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~---~~~~---~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~~----- 147 (1217)
.+++|.++.++++.+.+. .... .+....+.|.|+|.+|+|||++|+++++. .... .+.+..+.-.
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~-~~~~---~~~~~~~~~~~~~~~ 81 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATE-AQVP---FLAMAGAEFVEVIGG 81 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHH-HTCC---EEEEETTTTSSSSTT
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHH-hCCC---EEEechHHHHhhccC
Confidence 468999888777765542 1110 00022356889999999999999999876 2221 2334433211
Q ss_pred cHHHHHHHHHHHhhcCCC---CCCChhHHHHHHHHHHHh--cCcCHHHHHHhhcccCC--CCCCcEEEEEcCchHHH-Hh
Q 039990 148 DILRISKAILESITRSSC---GLTDLNSVQLKLKEAVFK--KNKSYELWQALKSPFMA--GAPGSRIIVTTRSMDVA-LK 219 (1217)
Q Consensus 148 ~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~~l~~--~~~~~~~~~~l~~~~~~--~~~gs~ilvTtR~~~v~-~~ 219 (1217)
........+......... -.++.+.+...-.....+ ..........+...+.. ...+..||.||...... ..
T Consensus 82 ~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~ 161 (262)
T 2qz4_A 82 LGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGA 161 (262)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSG
T ss_pred hhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHH
Confidence 112222333333321111 011222211000000000 00000111111111111 12356677777654321 11
Q ss_pred h----CCCceEeccCCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhccCCch-hHHH
Q 039990 220 M----GSGKNYELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGLPL-AARA 276 (1217)
Q Consensus 220 ~----~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~ 276 (1217)
. .-...+.++..+.++..+++...+.... . ..........+++.+.|.+- .|..
T Consensus 162 l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~-~--~~~~~~~~~~l~~~~~g~~~~~l~~ 220 (262)
T 2qz4_A 162 LMRPGRLDRHVFIDLPTLQERREIFEQHLKSLK-L--TQSSTFYSQRLAELTPGFSGADIAN 220 (262)
T ss_dssp GGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTT-C--CBTHHHHHHHHHHTCTTCCHHHHHH
T ss_pred HhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCC-C--CcchhhHHHHHHHHCCCCCHHHHHH
Confidence 1 1235778999999999999988764321 1 11112234778888888754 4433
No 190
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.01 E-value=0.01 Score=66.68 Aligned_cols=47 Identities=21% Similarity=0.374 Sum_probs=35.6
Q ss_pred CccccchhhHHH---HHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 79 PAVYGRNEDKAR---ILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 79 ~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.+|||++..++. +.+.+.... ...+.+.|+|++|+|||++|+++++.
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~----~~~~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGK----IAGRAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTC----CTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hhccChHHHHHHHHHHHHHHHcCC----CCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 469999988666 444544432 12368899999999999999999876
No 191
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.97 E-value=0.00011 Score=76.85 Aligned_cols=87 Identities=21% Similarity=0.116 Sum_probs=58.4
Q ss_pred CCcceE--EEcCCCCcccccccccccccChhhhcccccCcEEeccccccccccc---ccccccccccEEeecCCcccccc
Q 039990 481 CKKLRV--LSLEKDNIAEVPISIGCLKCLPEAITSLFNLEILILSYCWCLLKLP---SSIGNLVNLHHLDIEGADRLCEL 555 (1217)
Q Consensus 481 l~~Lr~--L~L~~~~i~~lp~~i~~L~~lp~~i~~L~~L~~L~L~~~~~l~~lp---~~i~~L~~L~~L~l~~~~~l~~l 555 (1217)
.+.|+. ++++.|..+.++.. ++-...++.+|++|+|++| .+..++ ..+..+++|++|+|++| .+..+
T Consensus 140 dp~L~~~~l~l~~N~~~~~~~~------l~i~~~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~ 211 (267)
T 3rw6_A 140 DPDLVAQNIDVVLNRRSCMAAT------LRIIEENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGN-ELKSE 211 (267)
T ss_dssp CHHHHHTTCCCCTTSHHHHHHH------HHHHHHHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTS-CCCSG
T ss_pred CcchhhcCccccCCHHHHHHHH------HHHHHhhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCC-ccCCc
Confidence 334444 55566655544431 2233367889999999999 666654 55779999999999999 77766
Q ss_pred CCCCccCc--ccccccccccccC
Q 039990 556 PLGMKELK--CLRTLTDFINVID 576 (1217)
Q Consensus 556 p~~i~~L~--~L~~L~~~~n~~~ 576 (1217)
..+..++ +|++|.+..|...
T Consensus 212 -~~l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 212 -RELDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp -GGGGGGTTSCCSEEECTTSTTG
T ss_pred -hhhhhcccCCcceEEccCCcCc
Confidence 3355555 7777777666554
No 192
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.95 E-value=0.0005 Score=68.76 Aligned_cols=45 Identities=22% Similarity=0.369 Sum_probs=38.1
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 79 PAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.+++||+++++.+.+.+.... .+.+.|+|.+|+|||++|+++++.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~------~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRRT------KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS------SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCCC------CCceEEECCCCCCHHHHHHHHHHH
Confidence 469999999999999986532 246789999999999999998876
No 193
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.88 E-value=0.0082 Score=65.99 Aligned_cols=144 Identities=13% Similarity=0.128 Sum_probs=75.1
Q ss_pred cEEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCcccHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhc-
Q 039990 106 FRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDFDILRISKAILESITRSSCGLTDLNSVQLKLKEAVFKK- 184 (1217)
Q Consensus 106 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~- 184 (1217)
...+.|+|++|+||||||+.+++......+ .++++++. ++...+...+... .... +.......
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~~-~~~~i~~~------~~~~~~~~~~~~~-----~~~~----~~~~~~~~~ 100 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGY-RVIYSSAD------DFAQAMVEHLKKG-----TINE----FRNMYKSVD 100 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHTTC-CEEEEEHH------HHHHHHHHHHHHT-----CHHH----HHHHHHTCS
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHCCC-EEEEEEHH------HHHHHHHHHHHcC-----cHHH----HHHHhcCCC
Confidence 356889999999999999999886322222 23455432 2233333333211 1111 11111111
Q ss_pred ---CcCH-------HHHHHhhcccCC-CCCCcEEEEEcCch---------HHHHhhCCCceEeccCCChHHHHHHHHHHH
Q 039990 185 ---NKSY-------ELWQALKSPFMA-GAPGSRIIVTTRSM---------DVALKMGSGKNYELKHLSDDDCWSVFLNHA 244 (1217)
Q Consensus 185 ---~~~~-------~~~~~l~~~~~~-~~~gs~ilvTtR~~---------~v~~~~~~~~~~~l~~l~~~~~~~lf~~~~ 244 (1217)
.|+. ...+.+...+.. ...|..||+||... .+...+....++++++ +.++..+++...+
T Consensus 101 vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~ 179 (324)
T 1l8q_A 101 LLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKL 179 (324)
T ss_dssp EEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHH
T ss_pred EEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHH
Confidence 1111 111222222211 12355788877632 2333334446789999 9999999998887
Q ss_pred hCCCCCCCCCchhhHHHHHHHhccCCc
Q 039990 245 FEGIDTGTQGNFESTRQRVVAKCKGLP 271 (1217)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~i~~~~~g~P 271 (1217)
.... .. -..++.+.|++.+ |..
T Consensus 180 ~~~~-~~---l~~~~l~~l~~~~-g~~ 201 (324)
T 1l8q_A 180 KEFN-LE---LRKEVIDYLLENT-KNV 201 (324)
T ss_dssp HHTT-CC---CCHHHHHHHHHHC-SSH
T ss_pred HhcC-CC---CCHHHHHHHHHhC-CCH
Confidence 4321 11 1245567777777 654
No 194
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.86 E-value=0.0042 Score=69.44 Aligned_cols=72 Identities=11% Similarity=0.073 Sum_probs=45.2
Q ss_pred CCCcEEEEEcCchH-HHHhh-CCCceEeccCCChHHHHHHHHHHHhCCCCCCCCCch-hhHHHHHHHhccCCchhHHHH
Q 039990 202 APGSRIIVTTRSMD-VALKM-GSGKNYELKHLSDDDCWSVFLNHAFEGIDTGTQGNF-ESTRQRVVAKCKGLPLAARAL 277 (1217)
Q Consensus 202 ~~gs~ilvTtR~~~-v~~~~-~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~-~~~~~~i~~~~~g~PLai~~~ 277 (1217)
..+..+|++|.+.. +.... .....+++++++.++..+.+.+.+...+ .. -. .+.++.|++.++|.+-.+..+
T Consensus 162 ~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~-~~---~~~~~~l~~i~~~~~G~~r~a~~~ 236 (354)
T 1sxj_E 162 SKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNER-IQ---LETKDILKRIAQASNGNLRVSLLM 236 (354)
T ss_dssp TTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHT-CE---ECCSHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcC-CC---CCcHHHHHHHHHHcCCCHHHHHHH
Confidence 34677777776532 21111 2236889999999999999988763211 11 11 346788899998887655433
No 195
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.84 E-value=0.0046 Score=71.47 Aligned_cols=45 Identities=24% Similarity=0.496 Sum_probs=37.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 79 PAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
..+|||+++++.+...+..... .-+.|+|.+|+|||++|+.+++.
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~~------~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRTK------NNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSSS------CEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCccCcHHHHHHHHHHHhccCC------CCeEEECCCCCCHHHHHHHHHHH
Confidence 4699999999999999975322 34579999999999999998876
No 196
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.82 E-value=0.016 Score=63.78 Aligned_cols=165 Identities=11% Similarity=0.074 Sum_probs=92.4
Q ss_pred hhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhcc-ccCC-------------------CCCeEEEEeC
Q 039990 85 NEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDK-LTDD-------------------FKPKAWVCVS 144 (1217)
Q Consensus 85 ~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~-~~~~-------------------F~~~~wv~~~ 144 (1217)
++..+.+...+..+. -...+.++|..|+|||++|+.+++.. .... .....++...
T Consensus 8 ~~~~~~l~~~i~~~~-----~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~ 82 (334)
T 1a5t_A 8 RPDFEKLVASYQAGR-----GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPE 82 (334)
T ss_dssp HHHHHHHHHHHHTTC-----CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCC
T ss_pred HHHHHHHHHHHHcCC-----cceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecc
Confidence 455666777665542 23578899999999999999988763 1110 1223444432
Q ss_pred ---CcccHHHHHHHHHHHhhcCCCC-------CCChhHHHHHHHHHHHhcCcCHHHHHHhhcccCCCCCCcEEEEEcCch
Q 039990 145 ---DDFDILRISKAILESITRSSCG-------LTDLNSVQLKLKEAVFKKNKSYELWQALKSPFMAGAPGSRIIVTTRSM 214 (1217)
Q Consensus 145 ---~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~ 214 (1217)
....+.+ .+++.+.+...... .++.+.+ ..+..+.+...+.....++.+|++|.+.
T Consensus 83 ~~~~~~~i~~-ir~l~~~~~~~~~~~~~kvviIdead~l-------------~~~a~naLLk~lEep~~~~~~Il~t~~~ 148 (334)
T 1a5t_A 83 KGKNTLGVDA-VREVTEKLNEHARLGGAKVVWVTDAALL-------------TDAAANALLKTLEEPPAETWFFLATREP 148 (334)
T ss_dssp TTCSSBCHHH-HHHHHHHTTSCCTTSSCEEEEESCGGGB-------------CHHHHHHHHHHHTSCCTTEEEEEEESCG
T ss_pred ccCCCCCHHH-HHHHHHHHhhccccCCcEEEEECchhhc-------------CHHHHHHHHHHhcCCCCCeEEEEEeCCh
Confidence 2233333 23444444322110 0111111 1122333444343334566777776654
Q ss_pred H-HHHh-hCCCceEeccCCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhccCCchhHHHH
Q 039990 215 D-VALK-MGSGKNYELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGLPLAARAL 277 (1217)
Q Consensus 215 ~-v~~~-~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 277 (1217)
. +... ......+++.+++.++..+.+.+.. . -..+.+..+++.++|.|..+..+
T Consensus 149 ~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~----~-----~~~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 149 ERLLATLRSRCRLHYLAPPPEQYAVTWLSREV----T-----MSQDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp GGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC----C-----CCHHHHHHHHHHTTTCHHHHHHT
T ss_pred HhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc----C-----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 3 2211 1333589999999999999888764 1 11345678999999999766443
No 197
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.80 E-value=0.044 Score=59.71 Aligned_cols=183 Identities=16% Similarity=0.123 Sum_probs=90.8
Q ss_pred CccccchhhHHHHHHHHhcC----C--CCCCCCcEEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCcc-----
Q 039990 79 PAVYGRNEDKARILDMVLKN----D--PSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDF----- 147 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~----~--~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~~----- 147 (1217)
.+++|.++.++.|.+.+... . .+.....+-|.|+|++|+|||+||+++++...... .+.+..+.-.
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~---~~~i~~~~l~~~~~g 88 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNST---FFSISSSDLVSKWLG 88 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCE---EEEEECCSSCCSSCC
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCc---EEEEEhHHHHhhhhh
Confidence 46899998888887766310 0 00002346788999999999999999997620111 1223322211
Q ss_pred cHHHHHHHHHHHhhcCCC---CCCChhH-----------HHHHHHHHHHhcCcCHHHHHHhhcccCCCCCCcEEEEEcCc
Q 039990 148 DILRISKAILESITRSSC---GLTDLNS-----------VQLKLKEAVFKKNKSYELWQALKSPFMAGAPGSRIIVTTRS 213 (1217)
Q Consensus 148 ~~~~~~~~i~~~l~~~~~---~~~~~~~-----------~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~ 213 (1217)
......+.+......... -.++.+. ....+...+ ...+ ..+.....+..||.||..
T Consensus 89 ~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l---------l~~l-d~~~~~~~~v~vI~atn~ 158 (322)
T 1xwi_A 89 ESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEF---------LVQM-QGVGVDNDGILVLGATNI 158 (322)
T ss_dssp SCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHH---------HHHH-HCSSSCCTTEEEEEEESC
T ss_pred HHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHH---------HHHH-hcccccCCCEEEEEecCC
Confidence 112223333322211110 0001110 011111100 0011 111112345556666654
Q ss_pred hHH---HHhhCCCceEeccCCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhccCCc-hhHHHHH
Q 039990 214 MDV---ALKMGSGKNYELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGLP-LAARALG 278 (1217)
Q Consensus 214 ~~v---~~~~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-Lai~~~~ 278 (1217)
... +-.-.-...+.++..+.++..+++........ ..-.......|++.+.|.. -.|..+.
T Consensus 159 ~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~----~~l~~~~l~~la~~t~G~sgadl~~l~ 223 (322)
T 1xwi_A 159 PWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQ----NSLTEADFRELGRKTDGYSGADISIIV 223 (322)
T ss_dssp TTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCC----BCCCHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred cccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCC----CCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 321 11113346788999999999999988763211 1112345778899998874 3455444
No 198
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.80 E-value=0.0033 Score=68.98 Aligned_cols=187 Identities=13% Similarity=0.013 Sum_probs=93.4
Q ss_pred CccccchhhHHHHHHHHhcC-------CCCCCCCcEEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCc-----
Q 039990 79 PAVYGRNEDKARILDMVLKN-------DPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDD----- 146 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~-------~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~----- 146 (1217)
.+++|.++.++.+.+.+... .... ...+-|.|+|.+|+|||++|+++++. .... .+.|..+.-
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~-~~~~---~~~v~~~~l~~~~~ 92 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNR-KPTSGILLYGPPGTGKSYLAKAVATE-ANST---FFSVSSSDLVSKWM 92 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTC-CCCCEEEEECSSSSCHHHHHHHHHHH-HTCE---EEEEEHHHHHTTTG
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCC-CCCCeEEEECCCCCcHHHHHHHHHHH-HCCC---EEEEchHHHhhccc
Confidence 56899999999998877210 0111 23467889999999999999999876 2222 122332110
Q ss_pred ccHHHHHHHHHHHhhcCCC---CCCChhHHHHHHHHHHHhcCcCHHHHHHhhc---ccCCCCCCcEEEEEcCchHH----
Q 039990 147 FDILRISKAILESITRSSC---GLTDLNSVQLKLKEAVFKKNKSYELWQALKS---PFMAGAPGSRIIVTTRSMDV---- 216 (1217)
Q Consensus 147 ~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~---~~~~~~~gs~ilvTtR~~~v---- 216 (1217)
-......+.+......... -.++.+.+...-... ...........+.. .+.....+..||.||.....
T Consensus 93 g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~--~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~a 170 (322)
T 3eie_A 93 GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG--ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSA 170 (322)
T ss_dssp GGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC--------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHH
T ss_pred chHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCC--cchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHH
Confidence 0122223333322221111 011111110000000 00000111122211 12223345666667765332
Q ss_pred -HHhhCCCceEeccCCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhccCC-chhHHHHH
Q 039990 217 -ALKMGSGKNYELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGL-PLAARALG 278 (1217)
Q Consensus 217 -~~~~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-PLai~~~~ 278 (1217)
.. .-...+.++..+.++-.+++...+..... .-.......|++.+.|. +-.|..+.
T Consensus 171 l~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~----~~~~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 171 IRR--RFERRIYIPLPDLAARTTMFEINVGDTPC----VLTKEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp HHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCC----CCCHHHHHHHHHTTTTCCHHHHHHHH
T ss_pred HHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCC----CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 22 23457788999999999999988743211 11234567888888874 44444443
No 199
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.79 E-value=0.0004 Score=69.16 Aligned_cols=124 Identities=10% Similarity=0.018 Sum_probs=87.3
Q ss_pred cccccCccceEccccc-cccccccccchhhhhhhcCCCCcceEEEcCCCCcccccccccccccChhhhcccccCcEEecc
Q 039990 445 FLDEVENLRTFLPIFM-EDFFISFCISPMVLSDLLPKCKKLRVLSLEKDNIAEVPISIGCLKCLPEAITSLFNLEILILS 523 (1217)
Q Consensus 445 ~~~~~~~lr~l~~~~~-~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~lp~~i~~L~~L~~L~L~ 523 (1217)
.+...+.|++|.+.++ ... ......+...+...+.|++|+|++|.|..--. ..+...+....+|++|+|+
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~----~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~-----~~l~~~L~~n~~L~~L~L~ 101 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIP----VPTLKACAEALKTNTYVKKFSIVGTRSNDPVA-----FALAEMLKVNNTLKSLNVE 101 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCC----HHHHHHHHHHHTTCCSCCEEECTTSCCCHHHH-----HHHHHHHHHCSSCCEEECC
T ss_pred HHhcCCCCCEEEecCCCCCC----HHHHHHHHHHHHhCCCcCEEECcCCCCChHHH-----HHHHHHHHhCCCcCEEECc
Confidence 4556788999988765 321 11234455667888999999999999864210 0345667777899999999
Q ss_pred ccccccc-----ccccccccccccEEee--cCCccccc-----cCCCCccCcccccccccccccChhh
Q 039990 524 YCWCLLK-----LPSSIGNLVNLHHLDI--EGADRLCE-----LPLGMKELKCLRTLTDFINVIDSQE 579 (1217)
Q Consensus 524 ~~~~l~~-----lp~~i~~L~~L~~L~l--~~~~~l~~-----lp~~i~~L~~L~~L~~~~n~~~~~~ 579 (1217)
+| .+.. +...+...++|++|++ ++| .+.. +...+...++|++|++..|.+....
T Consensus 102 ~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~~ 167 (185)
T 1io0_A 102 SN-FISGSGILALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPRL 167 (185)
T ss_dssp SS-CCCHHHHHHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHHH
T ss_pred CC-cCCHHHHHHHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCCCCChHH
Confidence 98 5654 5667888899999999 777 5543 3334566688999998877665443
No 200
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.75 E-value=0.0092 Score=68.12 Aligned_cols=171 Identities=16% Similarity=0.082 Sum_probs=86.6
Q ss_pred CccccchhhH---HHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCc-ccH---HH
Q 039990 79 PAVYGRNEDK---ARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDD-FDI---LR 151 (1217)
Q Consensus 79 ~~~vGr~~~~---~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~-~~~---~~ 151 (1217)
.++||.+..+ ..+...+... ....+.|+|.+|+||||+|+.+++. .... ++.++.. ... .+
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~------~~~~vLL~GppGtGKTtlAr~ia~~-~~~~-----f~~l~a~~~~~~~ir~ 93 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAG------HLHSMILWGPPGTGKTTLAEVIARY-ANAD-----VERISAVTSGVKEIRE 93 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHT------CCCEEEEECSTTSSHHHHHHHHHHH-TTCE-----EEEEETTTCCHHHHHH
T ss_pred HHhCCcHHHHhchHHHHHHHHcC------CCcEEEEECCCCCcHHHHHHHHHHH-hCCC-----eEEEEeccCCHHHHHH
Confidence 4689988877 6677777653 2357889999999999999999876 3222 2222221 122 22
Q ss_pred HHHHHHHHhhcCCC---CCCChhHHHHHHHHHHHhcCcCHHHHHHhhcccCCCCCCcEEEEEcCchHH---HHhhCCCce
Q 039990 152 ISKAILESITRSSC---GLTDLNSVQLKLKEAVFKKNKSYELWQALKSPFMAGAPGSRIIVTTRSMDV---ALKMGSGKN 225 (1217)
Q Consensus 152 ~~~~i~~~l~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~v---~~~~~~~~~ 225 (1217)
++............ -.++.+.+ .....+.+...+.. +.-.-|..||.+... ........+
T Consensus 94 ~~~~a~~~~~~~~~~iLfIDEI~~l-------------~~~~q~~LL~~le~-~~v~lI~att~n~~~~l~~aL~sR~~v 159 (447)
T 3pvs_A 94 AIERARQNRNAGRRTILFVDEVHRF-------------NKSQQDAFLPHIED-GTITFIGATTENPSFELNSALLSRARV 159 (447)
T ss_dssp HHHHHHHHHHTTCCEEEEEETTTCC-------------------CCHHHHHT-TSCEEEEEESSCGGGSSCHHHHTTEEE
T ss_pred HHHHHHHhhhcCCCcEEEEeChhhh-------------CHHHHHHHHHHHhc-CceEEEecCCCCcccccCHHHhCceeE
Confidence 22221111110000 00111110 00111122222221 112223335555431 111123358
Q ss_pred EeccCCChHHHHHHHHHHHhCCCCC---CCCCchhhHHHHHHHhccCCchhHH
Q 039990 226 YELKHLSDDDCWSVFLNHAFEGIDT---GTQGNFESTRQRVVAKCKGLPLAAR 275 (1217)
Q Consensus 226 ~~l~~l~~~~~~~lf~~~~~~~~~~---~~~~~~~~~~~~i~~~~~g~PLai~ 275 (1217)
+.+++++.++..+++.+.+...... ....-..+..+.|++.++|.+-.+.
T Consensus 160 ~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~ll 212 (447)
T 3pvs_A 160 YLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRAL 212 (447)
T ss_dssp EECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHH
T ss_pred EeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHH
Confidence 8999999999999998876431110 1111234567788888888775444
No 201
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.50 E-value=0.015 Score=63.83 Aligned_cols=46 Identities=24% Similarity=0.188 Sum_probs=38.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 79 PAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.+++|+++.++.+.+++.... ...++.+.|.+|+|||++|+++++.
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~-----~~~~~L~~G~~G~GKT~la~~la~~ 71 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGK-----IPHIILHSPSPGTGKTTVAKALCHD 71 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTC-----CCSEEEECSSTTSSHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCC-----CCeEEEeeCcCCCCHHHHHHHHHHH
Confidence 579999999999999987542 2357888899999999999999876
No 202
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.49 E-value=0.0093 Score=67.36 Aligned_cols=52 Identities=27% Similarity=0.284 Sum_probs=38.1
Q ss_pred CCccccchhhHHHHHHHHhcCCC------CCCCCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 78 EPAVYGRNEDKARILDMVLKNDP------SDAANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 78 ~~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
-.+++|.+..++.+.+.+..... ......+-|.|+|.+|+|||++|+++++.
T Consensus 114 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 114 FDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHH
T ss_pred hHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 35799999999999887732100 00012357889999999999999999876
No 203
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.48 E-value=0.015 Score=64.42 Aligned_cols=171 Identities=13% Similarity=0.144 Sum_probs=89.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhccccCCCC-CeEEEEeCCcccHHHHHHHHH
Q 039990 79 PAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDFK-PKAWVCVSDDFDILRISKAIL 157 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~-~~~wv~~~~~~~~~~~~~~i~ 157 (1217)
.+++|.+..++.+...+.... +..+.++|++|+||||+|+.+++......+. .+.-+..+.......+. +++
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g~------~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ir-~~i 97 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEGK------LPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVR-NQI 97 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC------CCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHH-THH
T ss_pred HHhcCcHHHHHHHHHHHhcCC------CceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccHHHHH-HHH
Confidence 458899888888888876532 2238899999999999999988763222221 12223333322332222 222
Q ss_pred HHhhcCC--C-C------CCChhHHHHHHHHHHHhcCcCHHHHHHhhcccCCCCCCcEEEEEcCchH-HHHh-hCCCceE
Q 039990 158 ESITRSS--C-G------LTDLNSVQLKLKEAVFKKNKSYELWQALKSPFMAGAPGSRIIVTTRSMD-VALK-MGSGKNY 226 (1217)
Q Consensus 158 ~~l~~~~--~-~------~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~-v~~~-~~~~~~~ 226 (1217)
..+.... . . .++.+.+. .+..+.+...+.......++|++|.... +... ......+
T Consensus 98 ~~~~~~~~~~~~~~~viiiDe~~~l~-------------~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~ 164 (340)
T 1sxj_C 98 KDFASTRQIFSKGFKLIILDEADAMT-------------NAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRF 164 (340)
T ss_dssp HHHHHBCCSSSCSCEEEEETTGGGSC-------------HHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred HHHHhhcccCCCCceEEEEeCCCCCC-------------HHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeE
Confidence 2222100 0 0 11111111 1122223222222234566777665432 1111 1223478
Q ss_pred eccCCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhccCCchh
Q 039990 227 ELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGLPLA 273 (1217)
Q Consensus 227 ~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 273 (1217)
++.+++.++..+.+.+.+-... .. -..+..+.|++.++|.+--
T Consensus 165 ~~~~l~~~~~~~~l~~~~~~~~-~~---i~~~~~~~i~~~s~G~~r~ 207 (340)
T 1sxj_C 165 RFQPLPQEAIERRIANVLVHEK-LK---LSPNAEKALIELSNGDMRR 207 (340)
T ss_dssp ECCCCCHHHHHHHHHHHHHTTT-CC---BCHHHHHHHHHHHTTCHHH
T ss_pred eccCCCHHHHHHHHHHHHHHcC-CC---CCHHHHHHHHHHcCCCHHH
Confidence 8999999998888877652211 11 1234677888888887653
No 204
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.43 E-value=0.032 Score=63.93 Aligned_cols=51 Identities=27% Similarity=0.349 Sum_probs=37.7
Q ss_pred CccccchhhHHHHHHHHhcC----CC--CCCCCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 79 PAVYGRNEDKARILDMVLKN----DP--SDAANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~----~~--~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.+++|.++.++.|.+.+... .. +.....+.|.|+|++|+|||+||+++++.
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~ 190 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE 190 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 56899999998888876310 00 00023467889999999999999999986
No 205
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.38 E-value=0.04 Score=61.06 Aligned_cols=51 Identities=25% Similarity=0.281 Sum_probs=37.1
Q ss_pred CccccchhhHHHHHHHHhcC----C--CCCCCCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 79 PAVYGRNEDKARILDMVLKN----D--PSDAANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~----~--~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.+++|.++.++.|.+.+... . .......+-|.|+|++|+|||+||+++++.
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 46999999999888876311 0 000022356889999999999999999986
No 206
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.35 E-value=0.012 Score=63.60 Aligned_cols=188 Identities=13% Similarity=0.068 Sum_probs=90.2
Q ss_pred CccccchhhHHHHHHHHhcCCC------CCCCCcEEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCcc-----
Q 039990 79 PAVYGRNEDKARILDMVLKNDP------SDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDF----- 147 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~~----- 147 (1217)
.+++|.+..++.+.+.+..... +-....+.|.|+|++|+|||++|+++++. .... .+.+..+.-.
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~-~~~~---~~~i~~~~l~~~~~~ 96 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATE-CSAT---FLNISAASLTSKYVG 96 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHH-TTCE---EEEEESTTTSSSSCS
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH-hCCC---eEEeeHHHHhhcccc
Confidence 4699999999998887643100 00012357889999999999999999876 2211 2233332211
Q ss_pred cHHHHHHHHHHHhhcCCC---CCCChhHHHHHHHHHHHhcCcCHHHHHHhh---cccCC--CCCCcEEEEEcCchH----
Q 039990 148 DILRISKAILESITRSSC---GLTDLNSVQLKLKEAVFKKNKSYELWQALK---SPFMA--GAPGSRIIVTTRSMD---- 215 (1217)
Q Consensus 148 ~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~~~~~l~---~~~~~--~~~gs~ilvTtR~~~---- 215 (1217)
......+.+......... -.++.+.+....... ...........+. ..++. .+.+..||.||....
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~--~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~ 174 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSS--EHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDE 174 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-------CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccC--cchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCH
Confidence 122333333322221110 001111100000000 0000000001111 11111 123456677776532
Q ss_pred -HHHhhCCCceEeccCCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhccCCch-hHHHHH
Q 039990 216 -VALKMGSGKNYELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGLPL-AARALG 278 (1217)
Q Consensus 216 -v~~~~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~~ 278 (1217)
+.. .-...+.++..+.++..+++...+.... . .-..+....+++.+.|.+- ++..+.
T Consensus 175 ~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~-~---~~~~~~~~~la~~~~g~~~~~l~~l~ 233 (297)
T 3b9p_A 175 AALR--RFTKRVYVSLPDEQTRELLLNRLLQKQG-S---PLDTEALRRLAKITDGYSGSDLTALA 233 (297)
T ss_dssp HHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGS-C---CSCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcC-C---CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 222 2235677888888888888887663211 1 1123457788888988875 554443
No 207
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.35 E-value=0.051 Score=59.67 Aligned_cols=183 Identities=17% Similarity=0.125 Sum_probs=87.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCcccHHHHHHHHHH
Q 039990 79 PAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDFDILRISKAILE 158 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 158 (1217)
..++|.+..++.+...+......+ .....+.|+|++|+||||||+.++.. ....|. ..+..-.....++ ..+..
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~-~~~~~~ll~Gp~G~GKTTLa~~ia~~-l~~~~~---~~sg~~~~~~~~l-~~~~~ 98 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRG-EVLDHVLLAGPPGLGKTTLAHIIASE-LQTNIH---VTSGPVLVKQGDM-AAILT 98 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHT-CCCCCEEEESSTTSSHHHHHHHHHHH-HTCCEE---EEETTTCCSHHHH-HHHHH
T ss_pred HHccCcHHHHHHHHHHHHHHHhcC-CCCCeEEEECCCCCcHHHHHHHHHHH-hCCCEE---EEechHhcCHHHH-HHHHH
Confidence 468898877777766654320000 22357899999999999999999876 322211 1111111122222 22222
Q ss_pred HhhcCCC-CCCChh----HHHHHHHHHHHhcC-c----CHHHHHHhhcccCCCCCCcEE-EEEcCchHHHHhh--CCCce
Q 039990 159 SITRSSC-GLTDLN----SVQLKLKEAVFKKN-K----SYELWQALKSPFMAGAPGSRI-IVTTRSMDVALKM--GSGKN 225 (1217)
Q Consensus 159 ~l~~~~~-~~~~~~----~~~~~l~~~l~~~~-~----~~~~~~~l~~~~~~~~~gs~i-lvTtR~~~v~~~~--~~~~~ 225 (1217)
.+....- -.++.+ .....+...+.... + .......+...++ ...+ -.|++...+...+ .....
T Consensus 99 ~~~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~----~~~li~at~~~~~Ls~~l~sR~~l~ 174 (334)
T 1in4_A 99 SLERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQ----PFTLVGATTRSGLLSSPLRSRFGII 174 (334)
T ss_dssp HCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------C----CCEEEEEESCGGGSCHHHHTTCSEE
T ss_pred HccCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCC----CeEEEEecCCcccCCHHHHHhcCce
Confidence 2211100 011111 12222222221110 0 0000111111111 1122 3455543322111 12235
Q ss_pred EeccCCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhccCCchhHH
Q 039990 226 YELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGLPLAAR 275 (1217)
Q Consensus 226 ~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 275 (1217)
+.+++.+.++-.+++.+.+-... . ....+.+..|++.+.|.|-.+.
T Consensus 175 ~~Ld~~~~~~l~~iL~~~~~~~~-~---~~~~~~~~~ia~~~~G~~R~a~ 220 (334)
T 1in4_A 175 LELDFYTVKELKEIIKRAASLMD-V---EIEDAAAEMIAKRSRGTPRIAI 220 (334)
T ss_dssp EECCCCCHHHHHHHHHHHHHHTT-C---CBCHHHHHHHHHTSTTCHHHHH
T ss_pred eeCCCCCHHHHHHHHHHHHHHcC-C---CcCHHHHHHHHHhcCCChHHHH
Confidence 78999999999999988763221 1 2235678899999999996443
No 208
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.16 E-value=0.01 Score=58.61 Aligned_cols=24 Identities=33% Similarity=0.505 Sum_probs=21.8
Q ss_pred EEEEEEccCCchHHHHHHHHHhcc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDK 130 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~ 130 (1217)
+.++|+|++|+||||||+.+++..
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 689999999999999999998763
No 209
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.13 E-value=0.18 Score=55.46 Aligned_cols=172 Identities=19% Similarity=0.148 Sum_probs=88.3
Q ss_pred CccccchhhHHHHHHHHhcC----C---CCCCCCcEEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCcc----
Q 039990 79 PAVYGRNEDKARILDMVLKN----D---PSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDF---- 147 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~----~---~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~~---- 147 (1217)
.++.|-++.+++|.+.+.-. + .-+-..++-|.++|++|.|||.||+++++. ....| +.|..+.-.
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e-~~~~f---~~v~~s~l~sk~v 223 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHH-TDCKF---IRVSGAELVQKYI 223 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHH-HTCEE---EEEEGGGGSCSST
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHh-hCCCc---eEEEhHHhhcccc
Confidence 46788888888887655321 0 000033466889999999999999999986 32222 334433221
Q ss_pred -cHHHHHHHHHHHhhcCCC----------------C-CCC-hhHHHHHHHHHHHhcCcCHHHHHHhhcccCCCCCCcEEE
Q 039990 148 -DILRISKAILESITRSSC----------------G-LTD-LNSVQLKLKEAVFKKNKSYELWQALKSPFMAGAPGSRII 208 (1217)
Q Consensus 148 -~~~~~~~~i~~~l~~~~~----------------~-~~~-~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~~gs~il 208 (1217)
......+++........+ . ... .......+...|. .++. +. ...+..||
T Consensus 224 Gese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~-------~lDg----~~-~~~~V~vI 291 (405)
T 4b4t_J 224 GEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLN-------QLDG----FE-TSKNIKII 291 (405)
T ss_dssp THHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHH-------HHHT----TT-CCCCEEEE
T ss_pred chHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHH-------hhhc----cC-CCCCeEEE
Confidence 122333333333221110 0 000 0111111111111 1111 11 23455667
Q ss_pred EEcCchHH---H--HhhCCCceEeccCCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhccCCc
Q 039990 209 VTTRSMDV---A--LKMGSGKNYELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGLP 271 (1217)
Q Consensus 209 vTtR~~~v---~--~~~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 271 (1217)
.||..++. | +.-.-+..++++..+.++-.++|+.+.-.. ....+-+ .++|++.+.|.-
T Consensus 292 aATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~-~l~~dvd----l~~lA~~t~G~S 354 (405)
T 4b4t_J 292 MATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKM-NLTRGIN----LRKVAEKMNGCS 354 (405)
T ss_dssp EEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTS-BCCSSCC----HHHHHHHCCSCC
T ss_pred eccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCC-CCCccCC----HHHHHHHCCCCC
Confidence 77765432 2 111345789999999999999998776321 1111111 467778887754
No 210
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.07 E-value=0.053 Score=60.82 Aligned_cols=172 Identities=16% Similarity=0.163 Sum_probs=87.9
Q ss_pred CccccchhhHHHHHHHHhcCCC-------CCCCCcEEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCcc----
Q 039990 79 PAVYGRNEDKARILDMVLKNDP-------SDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDF---- 147 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~~---- 147 (1217)
.++.|-++.+++|.+.+.-.-. -+-..++-|.++|++|.|||.||+++++. .... .+.|..+.-.
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e-~~~~---~~~v~~s~l~sk~~ 256 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAAT-IGAN---FIFSPASGIVDKYI 256 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH-HTCE---EEEEEGGGTCCSSS
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHH-hCCC---EEEEehhhhccccc
Confidence 4678888888887766532100 00033577889999999999999999987 2222 2334433221
Q ss_pred -cHHHHHHHHHHHhhcCCC------------------CCCChhHHHHHHHHHHHhcCcCHHHHHHhhcccCCCCCCcEEE
Q 039990 148 -DILRISKAILESITRSSC------------------GLTDLNSVQLKLKEAVFKKNKSYELWQALKSPFMAGAPGSRII 208 (1217)
Q Consensus 148 -~~~~~~~~i~~~l~~~~~------------------~~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~~gs~il 208 (1217)
......+.+........+ ...........+...|. .+.. + ....+..||
T Consensus 257 Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~----------~lDg-~-~~~~~vivI 324 (437)
T 4b4t_L 257 GESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLT----------QMDG-F-DNLGQTKII 324 (437)
T ss_dssp SHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHH----------HHHS-S-SCTTSSEEE
T ss_pred hHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHH----------Hhhc-c-cCCCCeEEE
Confidence 122333333333211110 00011111111111111 1111 1 122456678
Q ss_pred EEcCchHHHHh--hCC---CceEeccCCChHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhccCCc
Q 039990 209 VTTRSMDVALK--MGS---GKNYELKHLSDDDCWSVFLNHAFEGIDTGTQGNFESTRQRVVAKCKGLP 271 (1217)
Q Consensus 209 vTtR~~~v~~~--~~~---~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 271 (1217)
.||...+.... ... +..++++..+.++-.++|+.+.-... ....-+ ...+++.+.|.-
T Consensus 325 ~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~-~~~d~d----l~~lA~~t~G~s 387 (437)
T 4b4t_L 325 MATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVK-KTGEFD----FEAAVKMSDGFN 387 (437)
T ss_dssp EEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSC-BCSCCC----HHHHHHTCCSCC
T ss_pred EecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCC-CCcccC----HHHHHHhCCCCC
Confidence 78866543211 122 35788888888888899987763321 111111 457777887754
No 211
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.94 E-value=0.03 Score=69.38 Aligned_cols=45 Identities=24% Similarity=0.496 Sum_probs=38.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 79 PAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
..+|||+++++++.+.+..... .-|.++|.+|+|||++|+.+++.
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~~------~~vLL~G~pGtGKT~la~~la~~ 224 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRTK------NNPVLIGEPGVGKTAIAEGLAQQ 224 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSSS------CEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCccCchHHHHHHHHHHhCCCC------CCeEEECCCCCCHHHHHHHHHHH
Confidence 4699999999999999976322 34679999999999999998876
No 212
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.84 E-value=0.011 Score=66.12 Aligned_cols=51 Identities=29% Similarity=0.217 Sum_probs=37.2
Q ss_pred CccccchhhHHHHHHHHhcCCC-------CCCCCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 79 PAVYGRNEDKARILDMVLKNDP-------SDAANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.++.|-++.+++|.+.+.-.-. -+-..++-|.++|++|.|||++|+++++.
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 4688999888888776532100 00033567889999999999999999986
No 213
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=95.78 E-value=0.053 Score=58.23 Aligned_cols=141 Identities=11% Similarity=0.036 Sum_probs=81.9
Q ss_pred cchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhcc--ccCCCCCeEEEEeCC-cccHHHHHHHHHHH
Q 039990 83 GRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDK--LTDDFKPKAWVCVSD-DFDILRISKAILES 159 (1217)
Q Consensus 83 Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~--~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~ 159 (1217)
|-++.++.+.+.+... . .....++|++|+||||+|..+++.. .........++..+. ...+.++ +++.+.
T Consensus 1 g~~~~~~~L~~~i~~~-----~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~i-r~li~~ 73 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS-----E-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDI-RTIKDF 73 (305)
T ss_dssp ---CHHHHHHHHHHTC-----S-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHH-HHHHHH
T ss_pred ChHHHHHHHHHHHHCC-----C-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHH-HHHHHH
Confidence 4455667777777654 2 4688999999999999999987642 222334456666543 3444333 345555
Q ss_pred hhcCCCC-------CCChhHHHHHHHHHHHhcCcCHHHHHHhhcccCCCCCCcEEEEEcCch-HHHHhhCCCceEeccCC
Q 039990 160 ITRSSCG-------LTDLNSVQLKLKEAVFKKNKSYELWQALKSPFMAGAPGSRIIVTTRSM-DVALKMGSGKNYELKHL 231 (1217)
Q Consensus 160 l~~~~~~-------~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~-~v~~~~~~~~~~~l~~l 231 (1217)
+...... .++.+.+ +....+.+...+....+.+.+|++|.++ .+....... .+++.++
T Consensus 74 ~~~~p~~~~~kvviIdead~l-------------t~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l 139 (305)
T 2gno_A 74 LNYSPELYTRKYVIVHDCERM-------------TQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVN 139 (305)
T ss_dssp HTSCCSSSSSEEEEETTGGGB-------------CHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECC
T ss_pred HhhccccCCceEEEeccHHHh-------------CHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCCC
Confidence 5432211 0111111 1233444554444444567777766443 333333334 8999999
Q ss_pred ChHHHHHHHHHHH
Q 039990 232 SDDDCWSVFLNHA 244 (1217)
Q Consensus 232 ~~~~~~~lf~~~~ 244 (1217)
+.++..+.+.+.+
T Consensus 140 ~~~~i~~~L~~~~ 152 (305)
T 2gno_A 140 VPKEFRDLVKEKI 152 (305)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh
Confidence 9999999988775
No 214
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=95.77 E-value=0.074 Score=61.27 Aligned_cols=51 Identities=31% Similarity=0.284 Sum_probs=37.4
Q ss_pred CccccchhhHHHHHHHHhcCCCC-------CCCCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 79 PAVYGRNEDKARILDMVLKNDPS-------DAANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.+++|.+..++++.+++...-.. +....+-|.|+|.+|+|||++|+++++.
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~ 261 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE 261 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHH
Confidence 46899999999988877532000 0022356889999999999999999876
No 215
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.61 E-value=0.0028 Score=59.83 Aligned_cols=47 Identities=15% Similarity=0.050 Sum_probs=33.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 79 PAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.+++|++..+.++.+.+..-.. ...-|.|+|.+|+|||++|+.+++.
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~----~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAK----RTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHT----CSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred cCceeCCHHHHHHHHHHHHHhC----CCCcEEEECCCCccHHHHHHHHHHh
Confidence 4689999998888887754221 1134779999999999999997764
No 216
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.52 E-value=0.11 Score=58.11 Aligned_cols=51 Identities=25% Similarity=0.256 Sum_probs=36.5
Q ss_pred CccccchhhHHHHHHHHhc---C-C---CCCCCCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 79 PAVYGRNEDKARILDMVLK---N-D---PSDAANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~---~-~---~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.++.|-++.+++|.+.+.- . + .-+-..++-|.++|++|.|||.||+++++.
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhc
Confidence 3688888888888765421 0 0 000034567889999999999999999986
No 217
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.45 E-value=0.0081 Score=67.34 Aligned_cols=51 Identities=20% Similarity=0.242 Sum_probs=36.9
Q ss_pred CccccchhhHHHHHHHHhc----CC---CCCCCCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 79 PAVYGRNEDKARILDMVLK----ND---PSDAANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~----~~---~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.++.|-++.+++|.+.+.- .+ .-+-..++-|.++|++|.|||.+|+++++.
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHH
Confidence 4688888888888765422 10 000033577889999999999999999986
No 218
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.32 E-value=0.017 Score=58.21 Aligned_cols=61 Identities=23% Similarity=0.225 Sum_probs=37.9
Q ss_pred ccccch----hhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEe
Q 039990 80 AVYGRN----EDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCV 143 (1217)
Q Consensus 80 ~~vGr~----~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~ 143 (1217)
+|++.+ +.++.+.+++...... ...+.|.|+|.+|+|||+||+++++. .......++|+++
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~G~~GtGKT~la~~i~~~-~~~~~~~~~~~~~ 90 (202)
T 2w58_A 26 DVDLNDDGRIKAIRFAERFVAEYEPG--KKMKGLYLHGSFGVGKTYLLAAIANE-LAKRNVSSLIVYV 90 (202)
T ss_dssp SSCCSSHHHHHHHHHHHHHHHHCCSS--CCCCEEEEECSTTSSHHHHHHHHHHH-HHTTTCCEEEEEH
T ss_pred hccCCChhHHHHHHHHHHHHHHhhhc--cCCCeEEEECCCCCCHHHHHHHHHHH-HHHcCCeEEEEEh
Confidence 355543 3344555555443211 12267889999999999999999986 3333345666654
No 219
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.24 E-value=0.018 Score=58.00 Aligned_cols=44 Identities=23% Similarity=0.251 Sum_probs=34.5
Q ss_pred cchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 83 GRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 83 Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.|++.++.+.+.+..... ....+|+|.|..|+||||+|+.+...
T Consensus 2 ~~~~~~~~l~~~~~~~~~---~~~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIKT---AGRLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp CHHHHHHHHHHHHHTSCC---SSSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhcc---CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 356677888888876422 34579999999999999999998764
No 220
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.21 E-value=0.28 Score=54.20 Aligned_cols=51 Identities=25% Similarity=0.224 Sum_probs=36.6
Q ss_pred CccccchhhHHHHHHHHhcC---CC----CCCCCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 79 PAVYGRNEDKARILDMVLKN---DP----SDAANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~---~~----~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.++.|-++.+++|.+.+.-. .. -+-..++=|.++|++|.|||.||+++++.
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHH
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHH
Confidence 46788888888887765321 00 00033467889999999999999999986
No 221
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=94.89 E-value=0.021 Score=60.48 Aligned_cols=47 Identities=19% Similarity=0.270 Sum_probs=33.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 79 PAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
..++|++..+.++.+.+..... ....|.|+|.+|+|||++|+.+++.
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~----~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAP----LDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTT----SCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred ccceeCCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHHh
Confidence 3589999998888877654221 1145779999999999999998875
No 222
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=94.51 E-value=0.024 Score=61.21 Aligned_cols=48 Identities=23% Similarity=0.293 Sum_probs=37.2
Q ss_pred CccccchhhHHHHHHHHhcC----------CCCCCCCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 79 PAVYGRNEDKARILDMVLKN----------DPSDAANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~----------~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.+++|.++.++++.+.+... .. ...+.|.|+|++|+|||++|+++++.
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~---~~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGM---TPSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCC---CCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCC---CCCceEEEECCCCcCHHHHHHHHHHH
Confidence 46899998888888776431 00 22357899999999999999999986
No 223
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=94.38 E-value=0.019 Score=72.00 Aligned_cols=45 Identities=27% Similarity=0.533 Sum_probs=37.9
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 79 PAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
..+|||++++.++++.+..... .-+.++|.+|+|||++|+.+++.
T Consensus 170 d~viGr~~~i~~l~~~l~~~~~------~~vlL~G~pG~GKT~la~~la~~ 214 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRTK------NNPVLIGEPGVGKTAIVEGLAQR 214 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSSC------CCCEEEECTTSCHHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHhcCCC------CceEEEcCCCCCHHHHHHHHHHH
Confidence 4589999999999999876432 34678999999999999998876
No 224
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=94.35 E-value=0.059 Score=66.75 Aligned_cols=65 Identities=20% Similarity=0.259 Sum_probs=43.4
Q ss_pred CccccchhhHHHHHHHHhcCCCC---CCCCcEEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeC
Q 039990 79 PAVYGRNEDKARILDMVLKNDPS---DAANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVS 144 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~ 144 (1217)
..++|.+..++.+.+.+.....+ .......+.++|.+|+|||++|+++++.. ...-...+.++++
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l-~~~~~~~i~i~~s 558 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESI-FGDEESMIRIDMS 558 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHH-HSCTTCEEEEEGG
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh-cCCCcceEEEech
Confidence 46899999888888877643211 10223478999999999999999988762 1212234455544
No 225
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=94.08 E-value=0.028 Score=61.23 Aligned_cols=51 Identities=18% Similarity=0.283 Sum_probs=36.9
Q ss_pred CccccchhhHHHHHHHHhcC--CCC------CCCCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 79 PAVYGRNEDKARILDMVLKN--DPS------DAANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~--~~~------~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
..++|+++.++.+...+... ... .......+.|+|.+|+|||++|+.+++.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 45899999999888777541 000 0012346789999999999999999876
No 226
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.99 E-value=0.048 Score=58.19 Aligned_cols=42 Identities=19% Similarity=0.302 Sum_probs=29.4
Q ss_pred hHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 87 DKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 87 ~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
..++++..+....... ....+|.|.|++|+||||+|+++...
T Consensus 15 ~~~~~~~~~l~~~~~~-~~~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 15 RLNDNLEELIQGKKAV-ESPTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp HHHHHHHHHHTTCCCC-SSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCC-CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3444444444432222 45689999999999999999998865
No 227
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=93.99 E-value=0.038 Score=55.93 Aligned_cols=39 Identities=21% Similarity=0.283 Sum_probs=29.0
Q ss_pred hHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 87 DKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 87 ~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
-.++|.+.+.... ..-.+|+|+|..|.|||||++.+...
T Consensus 7 ~~~~~~~~~~~~~----~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 7 LCQGVLERLDPRQ----PGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp HHHHHHHHSCTTC----CSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC----CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4555666655431 33479999999999999999998765
No 228
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=93.98 E-value=0.029 Score=60.58 Aligned_cols=47 Identities=17% Similarity=0.258 Sum_probs=36.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 79 PAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
..++|+...+.++.+.+..-.. ....|.|+|.+|+|||++|+.+++.
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~----~~~~vLi~Ge~GtGKt~lAr~i~~~ 48 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAP----SDATVLIHGDSGTGKELVARALHAC 48 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCS----TTSCEEEESCTTSCHHHHHHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHhC----CCCcEEEECCCCchHHHHHHHHHHh
Confidence 4589999999988888765321 1235779999999999999998875
No 229
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=93.97 E-value=0.038 Score=68.68 Aligned_cols=45 Identities=24% Similarity=0.398 Sum_probs=38.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 79 PAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
..++||+++++++++.|.... ..-+.|+|.+|+|||++|+.+++.
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~------~~~vlL~G~~GtGKT~la~~la~~ 230 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRR------KNNPLLVGESGVGKTAIAEGLAWR 230 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS------SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCccCCHHHHHHHHHHHhccC------CCCeEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999987542 245679999999999999998875
No 230
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=93.86 E-value=0.028 Score=55.30 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=21.1
Q ss_pred EEEEEEccCCchHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
++|.|+|++|+||||+|+++.+.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999998875
No 231
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=93.84 E-value=0.034 Score=61.20 Aligned_cols=42 Identities=24% Similarity=0.241 Sum_probs=35.7
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 80 AVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 80 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.++|+++.++.+...+... .-|.++|.+|+|||++|+.+++.
T Consensus 28 ~i~g~~~~~~~l~~~l~~~--------~~vll~G~pGtGKT~la~~la~~ 69 (331)
T 2r44_A 28 VVVGQKYMINRLLIGICTG--------GHILLEGVPGLAKTLSVNTLAKT 69 (331)
T ss_dssp TCCSCHHHHHHHHHHHHHT--------CCEEEESCCCHHHHHHHHHHHHH
T ss_pred ceeCcHHHHHHHHHHHHcC--------CeEEEECCCCCcHHHHHHHHHHH
Confidence 5889999998888888753 25789999999999999998875
No 232
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=93.81 E-value=0.041 Score=57.93 Aligned_cols=52 Identities=25% Similarity=0.310 Sum_probs=34.8
Q ss_pred CCccccchhhHHHHHHHHh---cCCC---CCCCCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 78 EPAVYGRNEDKARILDMVL---KNDP---SDAANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 78 ~~~~vGr~~~~~~l~~~L~---~~~~---~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
-.+++|.+..++++.+.+. .... -+....+-|.|+|.+|+||||+|+.+++.
T Consensus 11 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 11 FADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp GGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 3468999887777655432 1100 00012345889999999999999999876
No 233
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=93.72 E-value=0.041 Score=63.34 Aligned_cols=42 Identities=24% Similarity=0.302 Sum_probs=35.6
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 80 AVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 80 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.++|+++.++.+...+... .-|.|+|.+|+|||+||+.+++.
T Consensus 23 ~ivGq~~~i~~l~~al~~~--------~~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSG--------ESVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHT--------CEEEEECCSSSSHHHHHHHGGGG
T ss_pred hhHHHHHHHHHHHHHHhcC--------CeeEeecCchHHHHHHHHHHHHH
Confidence 4889999998888877654 36789999999999999998875
No 234
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=93.69 E-value=0.032 Score=59.24 Aligned_cols=51 Identities=29% Similarity=0.322 Sum_probs=35.0
Q ss_pred CccccchhhHHHHHHHHhcCCCC------CCCCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 79 PAVYGRNEDKARILDMVLKNDPS------DAANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.+++|.++.++.+.+.+..-... +....+-|.|+|.+|+|||++|+++++.
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 46999998888877765410000 0011234779999999999999999876
No 235
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=93.66 E-value=0.057 Score=58.81 Aligned_cols=50 Identities=22% Similarity=0.347 Sum_probs=37.2
Q ss_pred ccccchhhHHHHHHHHhcCC---CCCCCCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 80 AVYGRNEDKARILDMVLKND---PSDAANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 80 ~~vGr~~~~~~l~~~L~~~~---~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.++|.+..++.+...+.... .........+.|+|.+|+|||++|+.+++.
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHH
Confidence 47899988888877776431 111022358999999999999999998876
No 236
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=93.61 E-value=0.031 Score=54.61 Aligned_cols=23 Identities=26% Similarity=0.247 Sum_probs=20.8
Q ss_pred EEEEEEccCCchHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.+|+|.|++|+||||+|+.+...
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998865
No 237
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.55 E-value=0.033 Score=54.55 Aligned_cols=23 Identities=35% Similarity=0.668 Sum_probs=20.4
Q ss_pred EEEEEEccCCchHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
|.|.|+|++|+|||||++++..+
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 45789999999999999998765
No 238
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.55 E-value=0.073 Score=48.73 Aligned_cols=52 Identities=17% Similarity=0.358 Sum_probs=39.5
Q ss_pred eEEEcCCCCcc--cccccccccccChhhhcccccCcEEeccccccccccccc-ccccccccEEeecCC
Q 039990 485 RVLSLEKDNIA--EVPISIGCLKCLPEAITSLFNLEILILSYCWCLLKLPSS-IGNLVNLHHLDIEGA 549 (1217)
Q Consensus 485 r~L~L~~~~i~--~lp~~i~~L~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~ 549 (1217)
.+++.++++++ .+|.. +| .+|++|+|++| .+..+|.+ |..+.+|++|+|.+|
T Consensus 11 ~~v~Cs~~~L~~~~vP~~------lp------~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTA------FP------VDTTELVLTGN-NLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp TEEECCSSCCCTTTSCSC------CC------TTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSS
T ss_pred CEEEeCCCCCccccCCCC------CC------cCCCEEECCCC-cCCccChhhhhhccccCEEEecCC
Confidence 36788888887 77752 23 35888888888 78888775 677888888888888
No 239
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=93.53 E-value=0.043 Score=63.23 Aligned_cols=47 Identities=21% Similarity=0.315 Sum_probs=35.1
Q ss_pred CccccchhhHHHHHH---HHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 79 PAVYGRNEDKARILD---MVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~---~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.+++|.++.++.+.. .+.... ...+-+.++|++|+|||++|+++++.
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~~----~~~~~iLl~GppGtGKT~la~ala~~ 86 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSKK----MAGRAVLLAGPPGTGKTALALAIAQE 86 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTC----CTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHHhCC----CCCCeEEEECCCcCCHHHHHHHHHHH
Confidence 579999988776544 333322 22356889999999999999999986
No 240
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.48 E-value=0.04 Score=54.28 Aligned_cols=22 Identities=36% Similarity=0.575 Sum_probs=20.5
Q ss_pred EEEEEEccCCchHHHHHHHHHh
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYN 128 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~ 128 (1217)
.+|.|.|++|+||||+|+++..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 6899999999999999999886
No 241
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.46 E-value=0.071 Score=57.30 Aligned_cols=47 Identities=13% Similarity=0.064 Sum_probs=32.6
Q ss_pred cccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 81 VYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 81 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
++|....+..+...+...... ..+.+|+|.|..|+||||+|+.+..-
T Consensus 69 ~~~~~~~l~~~~~~~l~~~~~--~~p~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 69 YVTARQTLQQATYQFLGKPEP--KVPYIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp HHHHHHHHHHHHHHHHTCCCC--CCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred hhcchHHHHHHHHHHhccCCC--CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 345445555555555544321 56789999999999999999987654
No 242
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=93.42 E-value=0.054 Score=57.63 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=22.8
Q ss_pred CCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 104 ANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 104 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
....+|+|+|..|+||||||+.+...
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45689999999999999999987765
No 243
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=93.41 E-value=0.034 Score=54.60 Aligned_cols=20 Identities=40% Similarity=0.680 Sum_probs=18.8
Q ss_pred EEEEEEccCCchHHHHHHHH
Q 039990 107 RVIPLVGMGGIGKTTLAQEV 126 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v 126 (1217)
.+|+|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999998
No 244
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.36 E-value=0.064 Score=56.17 Aligned_cols=42 Identities=29% Similarity=0.275 Sum_probs=29.7
Q ss_pred hHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 87 DKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 87 ~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
..+++...+....... ....+|.|+|++|+||||+|+.+...
T Consensus 14 ~~~~~~~~~~~~~~~~-~~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 14 ALARNLRSLTRGKKSS-KQPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp HHHHHHHHHHTTCCCC-SSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCcc-cCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3444444455433322 45689999999999999999998875
No 245
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=93.20 E-value=0.042 Score=55.10 Aligned_cols=23 Identities=39% Similarity=0.413 Sum_probs=21.3
Q ss_pred EEEEEEccCCchHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
++|+|+|++|+||||+|+.+...
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 58999999999999999998875
No 246
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=93.18 E-value=0.047 Score=58.86 Aligned_cols=41 Identities=20% Similarity=0.200 Sum_probs=29.0
Q ss_pred CCcEEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCC
Q 039990 104 ANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSD 145 (1217)
Q Consensus 104 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~ 145 (1217)
+..|||+|+|-|||||||.|..+..-..+..+ .+.-|++..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~Gk-kVllID~Dp 86 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGK-RVLQIGCDP 86 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTC-CEEEEEESS
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHCCC-eEEEEecCC
Confidence 45699999999999999999887654322222 366677664
No 247
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=93.13 E-value=0.088 Score=56.77 Aligned_cols=46 Identities=22% Similarity=0.248 Sum_probs=32.4
Q ss_pred ccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 82 YGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 82 vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
|+-++-.+++++.+...-.. +....|.|+|++|+||||+|+.++..
T Consensus 2 ~~~~~L~~~il~~l~~~i~~--g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIED--NYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTT--CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhcc--CCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 44455666677766433221 33467899999999999999988765
No 248
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.03 E-value=0.043 Score=54.33 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=21.0
Q ss_pred EEEEEEccCCchHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
+.|.|+|++|+||||+|+.+...
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 57889999999999999998875
No 249
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.02 E-value=0.21 Score=55.90 Aligned_cols=43 Identities=16% Similarity=0.187 Sum_probs=29.1
Q ss_pred hHHHHHHHHhcCCCC--CCCCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 87 DKARILDMVLKNDPS--DAANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 87 ~~~~l~~~L~~~~~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
-.++|.+.|...... ....+.+|.++|.+|+||||++..++..
T Consensus 79 l~~eL~~~L~~~~~~~~~~~~p~vIlivG~~G~GKTTt~~kLA~~ 123 (443)
T 3dm5_A 79 VYEELTKFLGTEAKPIEIKEKPTILLMVGIQGSGKTTTVAKLARY 123 (443)
T ss_dssp HHHHHHHHTTSSCCCCCCCSSSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcccccccCCCCeEEEEECcCCCCHHHHHHHHHHH
Confidence 345555555432111 0124689999999999999999988865
No 250
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=93.00 E-value=0.055 Score=53.85 Aligned_cols=23 Identities=35% Similarity=0.515 Sum_probs=21.1
Q ss_pred EEEEEEccCCchHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.+++|+|++|+||||+++.+...
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 68999999999999999998764
No 251
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=92.83 E-value=0.057 Score=53.81 Aligned_cols=25 Identities=32% Similarity=0.368 Sum_probs=22.1
Q ss_pred CcEEEEEEccCCchHHHHHHHHHhc
Q 039990 105 NFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 105 ~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
...+|.|.|++|+||||+|+.+...
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3478999999999999999998875
No 252
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=92.80 E-value=0.076 Score=59.17 Aligned_cols=50 Identities=28% Similarity=0.273 Sum_probs=35.7
Q ss_pred ccccchhhHHHHHHHHhc-------CC--CCCCCCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 80 AVYGRNEDKARILDMVLK-------ND--PSDAANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 80 ~~vGr~~~~~~l~~~L~~-------~~--~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.++|.+..++.+...+.. .. .......+.|.++|++|+|||++|+.+++.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 478999888888877721 00 000012357889999999999999999876
No 253
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=92.79 E-value=0.051 Score=53.44 Aligned_cols=23 Identities=17% Similarity=0.546 Sum_probs=21.1
Q ss_pred EEEEEEccCCchHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
++++|+|+.|+|||||++.+...
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 58999999999999999998864
No 254
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=92.76 E-value=0.075 Score=56.97 Aligned_cols=26 Identities=19% Similarity=0.243 Sum_probs=23.0
Q ss_pred CCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 104 ANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 104 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
..++.+.++|++|+|||+||+++++.
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44578889999999999999999986
No 255
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=92.72 E-value=0.096 Score=47.94 Aligned_cols=44 Identities=20% Similarity=0.300 Sum_probs=33.4
Q ss_pred ccccccccCCCCCCcceEeecCCCCCcccCccccCCcccccccccccccC
Q 039990 1113 SFPEVEKGVILPTSLTLIRISDFPKLERLSSKGFHYLLSLEQLKVSSCPN 1162 (1217)
Q Consensus 1113 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~L~~L~l~~c~~ 1162 (1217)
.+|. ..+++|+.|+|++ |+++.||...|..+++|+.|++.+||.
T Consensus 24 ~vP~-----~lp~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 24 SLPT-----AFPVDTTELVLTG-NNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TSCS-----CCCTTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred cCCC-----CCCcCCCEEECCC-CcCCccChhhhhhccccCEEEecCCCe
Confidence 6665 3566788888888 788888877778888888888887753
No 256
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=92.70 E-value=0.055 Score=53.97 Aligned_cols=23 Identities=26% Similarity=0.458 Sum_probs=21.1
Q ss_pred EEEEEEccCCchHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
++|.|.|++|+||||+|+.+.+.
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999998876
No 257
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=92.65 E-value=0.045 Score=53.45 Aligned_cols=23 Identities=39% Similarity=0.553 Sum_probs=20.9
Q ss_pred EEEEEEccCCchHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.+|+|+|+.|+||||+|+.+...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998875
No 258
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=92.57 E-value=0.07 Score=53.54 Aligned_cols=23 Identities=39% Similarity=0.472 Sum_probs=21.5
Q ss_pred EEEEEEccCCchHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.+|+|+|+.|.||||+|+.+...
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 79999999999999999998875
No 259
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=92.52 E-value=0.044 Score=55.16 Aligned_cols=24 Identities=21% Similarity=0.439 Sum_probs=21.5
Q ss_pred cEEEEEEccCCchHHHHHHHHHhc
Q 039990 106 FRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 106 ~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.++|+|.|+.|+||||+|+.+...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999998875
No 260
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=92.51 E-value=0.061 Score=56.20 Aligned_cols=23 Identities=22% Similarity=0.258 Sum_probs=21.0
Q ss_pred EEEEEEccCCchHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
++|.|.|++|+||||||++++..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhc
Confidence 57899999999999999999875
No 261
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=92.46 E-value=0.051 Score=53.47 Aligned_cols=23 Identities=43% Similarity=0.611 Sum_probs=20.9
Q ss_pred EEEEEEccCCchHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
++|.|+|++|+||||+|+.+.+.
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHHH
Confidence 57889999999999999998865
No 262
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=92.39 E-value=0.071 Score=55.81 Aligned_cols=26 Identities=15% Similarity=0.193 Sum_probs=22.3
Q ss_pred CCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 104 ANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 104 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
....+|+|.|+.|+||||+|+.+...
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 34579999999999999999998764
No 263
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=92.29 E-value=0.061 Score=53.57 Aligned_cols=23 Identities=30% Similarity=0.586 Sum_probs=21.1
Q ss_pred EEEEEEccCCchHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.+|.|.|++|+||||+|+.+...
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999998875
No 264
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=92.28 E-value=0.074 Score=52.01 Aligned_cols=24 Identities=33% Similarity=0.602 Sum_probs=21.5
Q ss_pred cEEEEEEccCCchHHHHHHHHHhc
Q 039990 106 FRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 106 ~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
-.+|+|+|+.|+||||+|+.+...
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 368999999999999999998764
No 265
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=92.27 E-value=0.077 Score=53.40 Aligned_cols=26 Identities=31% Similarity=0.437 Sum_probs=22.7
Q ss_pred CCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 104 ANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 104 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
....+|+|.|+.|+||||+|+.+.+.
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999998865
No 266
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=92.27 E-value=0.099 Score=54.24 Aligned_cols=25 Identities=20% Similarity=0.165 Sum_probs=22.2
Q ss_pred CcEEEEEEccCCchHHHHHHHHHhc
Q 039990 105 NFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 105 ~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
...+|+|.|++|+||||+|+.+.+.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3478999999999999999998865
No 267
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=92.24 E-value=0.072 Score=53.21 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=21.0
Q ss_pred EEEEEEccCCchHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.+|+|.|++|+||||+|+.+...
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999998765
No 268
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=92.23 E-value=0.065 Score=52.00 Aligned_cols=24 Identities=38% Similarity=0.538 Sum_probs=21.3
Q ss_pred cEEEEEEccCCchHHHHHHHHHhc
Q 039990 106 FRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 106 ~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
..+|+|.|+.|+||||+|+.+...
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998875
No 269
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.22 E-value=0.071 Score=51.04 Aligned_cols=25 Identities=32% Similarity=0.361 Sum_probs=21.9
Q ss_pred CcEEEEEEccCCchHHHHHHHHHhc
Q 039990 105 NFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 105 ~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
..++++|+|..|+|||||+.++...
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3579999999999999999998875
No 270
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=92.21 E-value=0.17 Score=51.30 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=21.3
Q ss_pred EEEEEEccCCchHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.+|+|.|++|+||||+|+.+.+.
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 68999999999999999998876
No 271
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=92.20 E-value=0.071 Score=52.62 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=21.3
Q ss_pred cEEEEEEccCCchHHHHHHHHHhc
Q 039990 106 FRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 106 ~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
...|+|+|+.|+||||+|+.+...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 368999999999999999998764
No 272
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=92.11 E-value=0.061 Score=54.19 Aligned_cols=24 Identities=29% Similarity=0.549 Sum_probs=21.6
Q ss_pred cEEEEEEccCCchHHHHHHHHHhc
Q 039990 106 FRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 106 ~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.++|+|+|++|+||||+++.+...
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999998865
No 273
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=92.04 E-value=0.057 Score=52.80 Aligned_cols=23 Identities=39% Similarity=0.639 Sum_probs=20.6
Q ss_pred EEEEEEccCCchHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
+.|.|.|++|+||||+|+.+...
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 36889999999999999998875
No 274
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=92.03 E-value=0.075 Score=53.31 Aligned_cols=23 Identities=39% Similarity=0.686 Sum_probs=21.3
Q ss_pred EEEEEEccCCchHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.+|+|+|+.|+||||+|+.+...
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 68999999999999999998875
No 275
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=92.03 E-value=0.079 Score=53.49 Aligned_cols=23 Identities=39% Similarity=0.684 Sum_probs=21.3
Q ss_pred EEEEEEccCCchHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
++|+|+|+.|+|||||++.+...
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 68999999999999999998875
No 276
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.02 E-value=0.083 Score=55.52 Aligned_cols=24 Identities=29% Similarity=0.555 Sum_probs=21.6
Q ss_pred cEEEEEEccCCchHHHHHHHHHhc
Q 039990 106 FRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 106 ~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
..+|.|.|++|+||||+|+.+...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999998865
No 277
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=91.95 E-value=0.09 Score=52.88 Aligned_cols=25 Identities=28% Similarity=0.315 Sum_probs=22.2
Q ss_pred CCcEEEEEEccCCchHHHHHHHHHh
Q 039990 104 ANFRVIPLVGMGGIGKTTLAQEVYN 128 (1217)
Q Consensus 104 ~~~~vv~I~G~gGiGKTtLA~~v~~ 128 (1217)
....+|+|+|+.|+||||+|+.+..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 4458999999999999999999876
No 278
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=91.91 E-value=0.076 Score=53.04 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=21.2
Q ss_pred EEEEEEccCCchHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.+|+|.|++|+||||+|+.+.+.
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999998865
No 279
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=91.91 E-value=0.086 Score=52.30 Aligned_cols=22 Identities=23% Similarity=0.495 Sum_probs=20.2
Q ss_pred EEEEEEccCCchHHHHHHHHHh
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYN 128 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~ 128 (1217)
.+++|+|+.|+||||+++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5889999999999999999875
No 280
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=91.88 E-value=0.094 Score=52.94 Aligned_cols=35 Identities=23% Similarity=0.303 Sum_probs=26.4
Q ss_pred CcEEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeC
Q 039990 105 NFRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVS 144 (1217)
Q Consensus 105 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~ 144 (1217)
...+|+|+|.+|.||||+|+.+... ++...+++..
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~-----~~~~~~i~~D 54 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH-----LPNCSVISQD 54 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT-----STTEEEEEGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh-----cCCcEEEeCC
Confidence 3479999999999999999997764 2245555543
No 281
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=91.88 E-value=0.3 Score=53.20 Aligned_cols=50 Identities=20% Similarity=0.263 Sum_probs=36.2
Q ss_pred EEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCcccHHHHHHHHHHHhhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDFDILRISKAILESITR 162 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~ 162 (1217)
+++.|+|.+|+||||||.+++... ...=..++|++....++.. .++.++.
T Consensus 62 ~i~~I~GppGsGKSTLal~la~~~-~~~gg~VlyId~E~s~~~~-----ra~rlgv 111 (356)
T 3hr8_A 62 RIVEIFGQESSGKTTLALHAIAEA-QKMGGVAAFIDAEHALDPV-----YAKNLGV 111 (356)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH-HHTTCCEEEEESSCCCCHH-----HHHHHTC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH-HhcCCeEEEEecccccchH-----HHHHcCC
Confidence 799999999999999999988753 2211347788877766643 4555554
No 282
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=91.86 E-value=0.092 Score=52.85 Aligned_cols=26 Identities=31% Similarity=0.411 Sum_probs=23.3
Q ss_pred CCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 104 ANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 104 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
...++|.|.|++|+||+|.|+.++++
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 45689999999999999999998876
No 283
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=91.74 E-value=0.13 Score=52.63 Aligned_cols=25 Identities=24% Similarity=0.418 Sum_probs=22.1
Q ss_pred CcEEEEEEccCCchHHHHHHHHHhc
Q 039990 105 NFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 105 ~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
...+|+|+|.+|+|||||+.++...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3578999999999999999998875
No 284
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=91.71 E-value=0.061 Score=50.73 Aligned_cols=38 Identities=24% Similarity=0.278 Sum_probs=27.4
Q ss_pred EEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCC
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSD 145 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~ 145 (1217)
..++|+|..|+|||||++.++.......+ .++++....
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~~~g~-~~~~~~~~~ 74 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQALEAGK-NAAYIDAAS 74 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHHTTTC-CEEEEETTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCC-cEEEEcHHH
Confidence 48999999999999999999886322211 256666443
No 285
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=91.68 E-value=0.064 Score=52.96 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=20.6
Q ss_pred EEEEEEccCCchHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.+|+|.|++|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999998875
No 286
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=91.64 E-value=0.087 Score=53.07 Aligned_cols=22 Identities=32% Similarity=0.570 Sum_probs=20.3
Q ss_pred EEEEEccCCchHHHHHHHHHhc
Q 039990 108 VIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 108 vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.|+|.|+.|+||||+|+.+.+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 6899999999999999998875
No 287
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=91.58 E-value=0.1 Score=51.52 Aligned_cols=24 Identities=38% Similarity=0.400 Sum_probs=21.9
Q ss_pred cEEEEEEccCCchHHHHHHHHHhc
Q 039990 106 FRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 106 ~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
..+|.|.|++|+||||+|+.++..
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 478999999999999999998876
No 288
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=91.54 E-value=0.095 Score=51.81 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=21.0
Q ss_pred EEEEEEccCCchHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
..|+|.|++|+||||+|+.+.+.
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999998864
No 289
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=91.53 E-value=0.09 Score=51.09 Aligned_cols=22 Identities=32% Similarity=0.685 Sum_probs=19.7
Q ss_pred EEEEEEccCCchHHHHHHHHHh
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYN 128 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~ 128 (1217)
.+++|+|..|.|||||++.++.
T Consensus 10 ei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHcc
Confidence 6999999999999999998553
No 290
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=91.51 E-value=0.083 Score=52.93 Aligned_cols=23 Identities=26% Similarity=0.484 Sum_probs=21.1
Q ss_pred EEEEEEccCCchHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.+|+|.|++|+||||+|+.+.+.
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999998875
No 291
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=91.50 E-value=0.072 Score=51.94 Aligned_cols=23 Identities=35% Similarity=0.473 Sum_probs=20.7
Q ss_pred EEEEEEccCCchHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
++|+|.|++|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999998875
No 292
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=91.48 E-value=0.13 Score=55.36 Aligned_cols=53 Identities=23% Similarity=0.240 Sum_probs=33.4
Q ss_pred hHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhccc-cCCCCCeEEEEe
Q 039990 87 DKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKL-TDDFKPKAWVCV 143 (1217)
Q Consensus 87 ~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~-~~~F~~~~wv~~ 143 (1217)
.++.+.+++..... ...+.+.|+|.+|+|||+||.++++... ...+ .++++.+
T Consensus 136 ~~~~~~~~i~~~~~---~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~-~v~~~~~ 189 (308)
T 2qgz_A 136 AFSAILDFVEQYPS---AEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGV-STTLLHF 189 (308)
T ss_dssp HHHHHHHHHHHCSC---SSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCC-CEEEEEH
T ss_pred HHHHHHHHHHhccc---cCCceEEEECCCCCCHHHHHHHHHHHHHHhcCC-cEEEEEH
Confidence 34444555544221 1135788999999999999999988633 3333 3555554
No 293
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=91.46 E-value=0.094 Score=52.64 Aligned_cols=25 Identities=28% Similarity=0.332 Sum_probs=21.9
Q ss_pred CcEEEEEEccCCchHHHHHHHHHhc
Q 039990 105 NFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 105 ~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
...+|+|.|++|+||||+|+.+...
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999999998875
No 294
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=91.46 E-value=0.091 Score=52.88 Aligned_cols=22 Identities=41% Similarity=0.462 Sum_probs=20.0
Q ss_pred EEEEEEccCCchHHHHHHHHHh
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYN 128 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~ 128 (1217)
.+|+|+|+.|+||||+|+.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999875
No 295
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=91.45 E-value=0.12 Score=54.03 Aligned_cols=50 Identities=30% Similarity=0.341 Sum_probs=32.4
Q ss_pred CccccchhhHHHHHHHHhcCCC-------CCCCCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 79 PAVYGRNEDKARILDMVLKNDP-------SDAANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.+++|.++...++.+....-.. +- .-.+-+.|+|.+|+||||||+.++..
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~-~~~~g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGA-RIPKGVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTC-CCCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCC-CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4688988766655443321000 00 11123889999999999999999876
No 296
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=91.44 E-value=0.11 Score=51.80 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=21.7
Q ss_pred cEEEEEEccCCchHHHHHHHHHhc
Q 039990 106 FRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 106 ~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.++|+|.|++|+||||+|+.+.+.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999999998865
No 297
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=91.36 E-value=0.11 Score=52.51 Aligned_cols=22 Identities=36% Similarity=0.433 Sum_probs=20.0
Q ss_pred EEEEEEccCCchHHHHHHHHHh
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYN 128 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~ 128 (1217)
.+|+|+|+.|.||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999865
No 298
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=91.35 E-value=0.15 Score=50.05 Aligned_cols=37 Identities=8% Similarity=0.115 Sum_probs=26.4
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 88 KARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 88 ~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
+..+..++..- +.-..+.|+|++|.|||++|.++++.
T Consensus 45 ~~~l~~~~~~i-----Pkkn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 45 LGALKSFLKGT-----PKKNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp HHHHHHHHHTC-----TTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-----CcccEEEEECCCCCCHHHHHHHHHHH
Confidence 45555555431 22246899999999999999888876
No 299
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=91.34 E-value=0.096 Score=51.12 Aligned_cols=22 Identities=36% Similarity=0.598 Sum_probs=19.8
Q ss_pred EEEEEccCCchHHHHHHHHHhc
Q 039990 108 VIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 108 vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.++|+|..|+|||||++.++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998765
No 300
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=91.33 E-value=0.066 Score=52.83 Aligned_cols=23 Identities=30% Similarity=0.362 Sum_probs=17.0
Q ss_pred EEEEEEccCCchHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.+|.|.|++|+||||+|+.+...
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999998765
No 301
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=91.32 E-value=0.098 Score=51.59 Aligned_cols=24 Identities=17% Similarity=0.567 Sum_probs=21.5
Q ss_pred cEEEEEEccCCchHHHHHHHHHhc
Q 039990 106 FRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 106 ~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
-++|+|+|+.|+|||||++.+...
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECcCCCCHHHHHHHHHhh
Confidence 368999999999999999998865
No 302
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=91.30 E-value=0.25 Score=51.19 Aligned_cols=44 Identities=14% Similarity=0.101 Sum_probs=31.8
Q ss_pred EEEEEEccCCchHHHHHHHHHhcc-ccC----CCCCeEEEEeCCcccHH
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDK-LTD----DFKPKAWVCVSDDFDIL 150 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~-~~~----~F~~~~wv~~~~~~~~~ 150 (1217)
.+++|+|.+|+||||||..++... ... .-..++|++....++..
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~ 73 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPE 73 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHH
Confidence 599999999999999999988742 211 12467888876654443
No 303
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=91.26 E-value=0.081 Score=52.30 Aligned_cols=23 Identities=35% Similarity=0.668 Sum_probs=20.8
Q ss_pred EEEEEEccCCchHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
++++|+|+.|+|||||++.+...
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 57999999999999999998864
No 304
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=91.23 E-value=0.098 Score=53.40 Aligned_cols=24 Identities=29% Similarity=0.313 Sum_probs=21.4
Q ss_pred cEEEEEEccCCchHHHHHHHHHhc
Q 039990 106 FRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 106 ~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
...|.|.|++|+||||+|+.+...
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999998875
No 305
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=91.20 E-value=0.12 Score=51.18 Aligned_cols=25 Identities=32% Similarity=0.438 Sum_probs=22.1
Q ss_pred CcEEEEEEccCCchHHHHHHHHHhc
Q 039990 105 NFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 105 ~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
...+|+|+|+.|+||||+|+.+...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 4579999999999999999998764
No 306
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=91.20 E-value=0.48 Score=53.07 Aligned_cols=42 Identities=24% Similarity=0.181 Sum_probs=28.9
Q ss_pred HHHHHHHHhcCCCC---CCCCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 88 KARILDMVLKNDPS---DAANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 88 ~~~l~~~L~~~~~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.+++.+.|...... .....++|.++|.+|+||||++..++..
T Consensus 76 ~~eL~~~L~~~~~~~~~~~~~~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 76 YDELSKLFGGDKEPNVNPTKLPFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp HHHHHHHHCSSSCCCCSCCSSSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred HHHHHHhcCccccccccccCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45555555432111 0134689999999999999999998865
No 307
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=91.16 E-value=0.1 Score=52.51 Aligned_cols=23 Identities=22% Similarity=0.395 Sum_probs=20.9
Q ss_pred EEEEEEccCCchHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.+++|+|+.|+|||||++.+...
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 58999999999999999998764
No 308
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=91.15 E-value=0.12 Score=52.43 Aligned_cols=24 Identities=42% Similarity=0.365 Sum_probs=21.5
Q ss_pred cEEEEEEccCCchHHHHHHHHHhc
Q 039990 106 FRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 106 ~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
..+|+|+|..|.|||||++.+...
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 369999999999999999998764
No 309
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=91.14 E-value=0.11 Score=50.34 Aligned_cols=22 Identities=27% Similarity=0.321 Sum_probs=20.1
Q ss_pred EEEEEccCCchHHHHHHHHHhc
Q 039990 108 VIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 108 vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.|+|.|++|+||||+|+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999998875
No 310
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=91.13 E-value=0.11 Score=52.40 Aligned_cols=23 Identities=35% Similarity=0.684 Sum_probs=21.0
Q ss_pred EEEEEEccCCchHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.+|+|+|+.|+||||+|+.+...
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999998765
No 311
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=91.05 E-value=0.089 Score=58.38 Aligned_cols=45 Identities=20% Similarity=0.270 Sum_probs=32.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 79 PAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.+++|.+..+..+........ ..-|.|+|.+|+|||++|+.+++.
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~------~~~vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPG------IGGVLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGG------GCCEEEECCGGGCTTHHHHHHHHH
T ss_pred hhccChHHHHHHHHHHhhCCC------CceEEEECCCCccHHHHHHHHHHh
Confidence 458999886655544443221 123889999999999999998875
No 312
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=90.99 E-value=0.18 Score=57.55 Aligned_cols=51 Identities=31% Similarity=0.266 Sum_probs=34.9
Q ss_pred CccccchhhHHHHHHHHhcCCC------CCCCCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 79 PAVYGRNEDKARILDMVLKNDP------SDAANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.+++|.++.++++.+....-.. -+....+-|.|+|++|+|||+||++++..
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4689998877777665432100 00012345889999999999999999876
No 313
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=90.98 E-value=0.11 Score=53.35 Aligned_cols=23 Identities=35% Similarity=0.495 Sum_probs=20.9
Q ss_pred EEEEEEccCCchHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.+|+|+|+.|+||||+|+.+...
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999998764
No 314
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=90.98 E-value=0.37 Score=51.37 Aligned_cols=25 Identities=32% Similarity=0.335 Sum_probs=21.9
Q ss_pred CcEEEEEEccCCchHHHHHHHHHhc
Q 039990 105 NFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 105 ~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
..++|+|+|.+|+||||++..++..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~ 128 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAI 128 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3479999999999999999998765
No 315
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=90.97 E-value=0.17 Score=56.72 Aligned_cols=23 Identities=39% Similarity=0.492 Sum_probs=20.7
Q ss_pred EEEEEEccCCchHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
..+.++|.+|+|||++|+.+++.
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999876
No 316
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=90.96 E-value=0.17 Score=51.63 Aligned_cols=41 Identities=29% Similarity=0.172 Sum_probs=30.3
Q ss_pred EEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCcccHHH
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDFDILR 151 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~~~~~~ 151 (1217)
.+++|+|.+|+||||||..++. . .-..++|++....++...
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~-~---~~~~v~~i~~~~~~~~~~ 61 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL-L---SGKKVAYVDTEGGFSPER 61 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH-H---HCSEEEEEESSCCCCHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH-H---cCCcEEEEECCCCCCHHH
Confidence 5899999999999999999876 1 113577887665444433
No 317
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=90.95 E-value=0.14 Score=52.31 Aligned_cols=40 Identities=15% Similarity=0.202 Sum_probs=29.3
Q ss_pred chhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 84 RNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 84 r~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.++..+++.+.+.. ...++|+|+|.+|+|||||+.++...
T Consensus 14 ~~~~~~~~~~~~~~------~~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 14 NKRLAEKNREALRE------SGTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HHHHHHHHHHHHHH------HTCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred cHHHHHHHHHhhcc------cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 34445555555433 33579999999999999999998875
No 318
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=90.77 E-value=0.12 Score=52.58 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=21.7
Q ss_pred cEEEEEEccCCchHHHHHHHHHhc
Q 039990 106 FRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 106 ~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
..+|+|.|+.|+||||+|+.+.+.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999998875
No 319
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=90.72 E-value=0.098 Score=52.27 Aligned_cols=23 Identities=35% Similarity=0.684 Sum_probs=20.6
Q ss_pred EEEEEEccCCchHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
++++|+|+.|+|||||++.+...
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 57899999999999999998764
No 320
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=90.72 E-value=0.31 Score=52.97 Aligned_cols=53 Identities=17% Similarity=0.261 Sum_probs=37.4
Q ss_pred EEEEEEccCCchHHHHHHHHHhccccC-C----CCCeEEEEeCCcccHHHHHHHHHHHh
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDKLTD-D----FKPKAWVCVSDDFDILRISKAILESI 160 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~~~~-~----F~~~~wv~~~~~~~~~~~~~~i~~~l 160 (1217)
.++.|+|.+|+||||+|.+++...... . =..++|++....++..++.+ +++.+
T Consensus 108 ~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~ 165 (324)
T 2z43_A 108 TMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKAL 165 (324)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHT
T ss_pred cEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHh
Confidence 589999999999999999988652111 0 23678998887776665543 34444
No 321
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=90.70 E-value=0.51 Score=51.70 Aligned_cols=54 Identities=17% Similarity=0.191 Sum_probs=37.9
Q ss_pred cEEEEEEccCCchHHHHHHHHHhcc-ccC----CCCCeEEEEeCCcccHHHHHHHHHHHh
Q 039990 106 FRVIPLVGMGGIGKTTLAQEVYNDK-LTD----DFKPKAWVCVSDDFDILRISKAILESI 160 (1217)
Q Consensus 106 ~~vv~I~G~gGiGKTtLA~~v~~~~-~~~----~F~~~~wv~~~~~~~~~~~~~~i~~~l 160 (1217)
-.++.|+|.+|+||||||.+++... ... .=..++|++....++...+.. +++.+
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~ 180 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRF 180 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHc
Confidence 3799999999999999999988752 111 123678998887776655543 33444
No 322
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=90.68 E-value=0.12 Score=52.49 Aligned_cols=24 Identities=21% Similarity=0.243 Sum_probs=21.8
Q ss_pred cEEEEEEccCCchHHHHHHHHHhc
Q 039990 106 FRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 106 ~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
..+|+|.|+.|+||||+|+.+.+.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999998875
No 323
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=90.67 E-value=0.11 Score=53.32 Aligned_cols=24 Identities=21% Similarity=0.355 Sum_probs=21.4
Q ss_pred cEEEEEEccCCchHHHHHHHHHhc
Q 039990 106 FRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 106 ~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
...|+|.|++|+||||+|+.+...
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999998865
No 324
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=90.67 E-value=0.44 Score=51.53 Aligned_cols=51 Identities=12% Similarity=0.134 Sum_probs=36.8
Q ss_pred EEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCcccHHHHHHHHHHHh
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDFDILRISKAILESI 160 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l 160 (1217)
.++.|.|.+|+||||+|.+++....... ..++|++.. .+..++...+....
T Consensus 69 ~l~li~G~pG~GKTtl~l~ia~~~a~~g-~~vl~~slE--~s~~~l~~R~~~~~ 119 (315)
T 3bh0_A 69 NFVLIAARPSMGKTAFALKQAKNMSDND-DVVNLHSLE--MGKKENIKRLIVTA 119 (315)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHTTT-CEEEEEESS--SCHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHcC-CeEEEEECC--CCHHHHHHHHHHHH
Confidence 5899999999999999999886642222 567787755 45566666666544
No 325
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=90.61 E-value=0.13 Score=51.32 Aligned_cols=22 Identities=41% Similarity=0.700 Sum_probs=20.2
Q ss_pred EEEEEccCCchHHHHHHHHHhc
Q 039990 108 VIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 108 vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
+|+|.|+.|+||||+|+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998875
No 326
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=90.59 E-value=0.12 Score=53.71 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=21.1
Q ss_pred EEEEEEccCCchHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.+|+|+|+.|+||||+++.+++.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~ 50 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQN 50 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999998864
No 327
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=90.54 E-value=0.74 Score=51.88 Aligned_cols=58 Identities=16% Similarity=0.117 Sum_probs=36.7
Q ss_pred hhHHHHHHHHhcCCCC---CCCCcEEEEEEccCCchHHHHHHHHHhccccC-CCCCeEEEEeC
Q 039990 86 EDKARILDMVLKNDPS---DAANFRVIPLVGMGGIGKTTLAQEVYNDKLTD-DFKPKAWVCVS 144 (1217)
Q Consensus 86 ~~~~~l~~~L~~~~~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-~F~~~~wv~~~ 144 (1217)
.-.+++.+.+...... .....++|.|+|.||+||||+|..++....+. .+ .+..|++.
T Consensus 77 ~~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~-kVllvd~D 138 (433)
T 2xxa_A 77 IVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKK-KVLVVSAD 138 (433)
T ss_dssp HHHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCC-CEEEEECC
T ss_pred HHHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCC-eEEEEecC
Confidence 3456666776543211 11346899999999999999999988653222 22 34555554
No 328
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=90.45 E-value=0.15 Score=54.27 Aligned_cols=25 Identities=36% Similarity=0.643 Sum_probs=21.9
Q ss_pred CCcEEEEEEccCCchHHHHHHHHHh
Q 039990 104 ANFRVIPLVGMGGIGKTTLAQEVYN 128 (1217)
Q Consensus 104 ~~~~vv~I~G~gGiGKTtLA~~v~~ 128 (1217)
....+|+|.|+.|+||||+|+.+..
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3457999999999999999999873
No 329
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=90.42 E-value=0.17 Score=50.63 Aligned_cols=37 Identities=19% Similarity=0.155 Sum_probs=26.2
Q ss_pred EEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCC
Q 039990 108 VIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSD 145 (1217)
Q Consensus 108 vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~ 145 (1217)
.|.+.|.||+||||+|..++.......++ +.++.+..
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~~-V~v~d~D~ 44 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQGVR-VMAGVVET 44 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCC-EEEEECCC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCC-EEEEEeCC
Confidence 47789999999999998888764444454 44445443
No 330
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=90.35 E-value=0.13 Score=52.24 Aligned_cols=22 Identities=36% Similarity=0.582 Sum_probs=19.7
Q ss_pred EEEEEccCCchHHHHHHHHHhc
Q 039990 108 VIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 108 vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.|+|.|++|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998765
No 331
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=90.29 E-value=0.11 Score=52.97 Aligned_cols=24 Identities=17% Similarity=0.124 Sum_probs=21.4
Q ss_pred cEEEEEEccCCchHHHHHHHHHhc
Q 039990 106 FRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 106 ~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
...|.|.|++|+||||+|+.++..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999998875
No 332
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=90.27 E-value=0.25 Score=54.50 Aligned_cols=38 Identities=21% Similarity=0.357 Sum_probs=27.7
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 88 KARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 88 ~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
..++.+.+.... ....+|+|+|.+|+|||||+.++...
T Consensus 65 ~~~~~~~~~~~~----~~~~~I~i~G~~G~GKSTl~~~L~~~ 102 (355)
T 3p32_A 65 AQQLLLRLLPDS----GNAHRVGITGVPGVGKSTAIEALGMH 102 (355)
T ss_dssp HHHHHHHHGGGC----CCSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhHhhc----CCceEEEEECCCCCCHHHHHHHHHHH
Confidence 344455554322 44589999999999999999998765
No 333
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=90.26 E-value=0.16 Score=54.65 Aligned_cols=26 Identities=23% Similarity=0.185 Sum_probs=22.6
Q ss_pred CCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 104 ANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 104 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
....+|+|.|..|+||||||+.+..-
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhh
Confidence 34579999999999999999998764
No 334
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=90.26 E-value=0.17 Score=53.81 Aligned_cols=51 Identities=29% Similarity=0.309 Sum_probs=33.4
Q ss_pred CCccccchhhHHHHHHHHhcCCC-------CCCCCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 78 EPAVYGRNEDKARILDMVLKNDP-------SDAANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 78 ~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
-.+++|.++..+++.+....-.. +- .-.+-|.|+|.+|+||||||+.++..
T Consensus 39 ~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~-~~~~gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 39 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGA-RIPKGVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp GGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTC-CCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHhCChHHHHHHHHHHHHHHHCHHHHHHcCC-CCCCeEEEECCCcChHHHHHHHHHHH
Confidence 35789988776666544321100 00 01123889999999999999999876
No 335
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=90.24 E-value=0.15 Score=62.97 Aligned_cols=51 Identities=33% Similarity=0.307 Sum_probs=37.8
Q ss_pred CccccchhhHHHHHHHHhcC----C---CCCCCCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 79 PAVYGRNEDKARILDMVLKN----D---PSDAANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~----~---~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.+++|.++.++++.+++... . .-+......|.|+|.+|+||||||+.++..
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~ 261 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHT
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 56899999998888877530 0 000023357899999999999999999875
No 336
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=90.22 E-value=0.15 Score=55.00 Aligned_cols=23 Identities=39% Similarity=0.440 Sum_probs=21.3
Q ss_pred EEEEEEccCCchHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
++|+|.|+.|+||||||+.++..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 58999999999999999998875
No 337
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=90.18 E-value=0.14 Score=52.07 Aligned_cols=22 Identities=27% Similarity=0.510 Sum_probs=19.7
Q ss_pred EEEEEccCCchHHHHHHHHHhc
Q 039990 108 VIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 108 vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.|+|.|++|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998765
No 338
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=90.14 E-value=0.35 Score=49.57 Aligned_cols=39 Identities=23% Similarity=0.260 Sum_probs=28.1
Q ss_pred EEEEEEccCCchHHHHHHHHHhcc-c---cC-CCCCeEEEEeCC
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDK-L---TD-DFKPKAWVCVSD 145 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~-~---~~-~F~~~~wv~~~~ 145 (1217)
.+++|+|..|+|||||++.++... . .. .-..++|+....
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~ 69 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 69 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence 699999999999999999987631 1 11 123477876543
No 339
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=90.06 E-value=0.18 Score=54.04 Aligned_cols=24 Identities=25% Similarity=0.483 Sum_probs=21.8
Q ss_pred cEEEEEEccCCchHHHHHHHHHhc
Q 039990 106 FRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 106 ~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.++|.|+|+.|+||||||.+++..
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999998875
No 340
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=90.06 E-value=0.15 Score=51.20 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=21.1
Q ss_pred EEEEEEccCCchHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
..|+|.|+.|+||||+|+.+.+.
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 58999999999999999998875
No 341
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=90.05 E-value=0.087 Score=53.52 Aligned_cols=22 Identities=32% Similarity=0.610 Sum_probs=20.2
Q ss_pred EEEEEccCCchHHHHHHHHHhc
Q 039990 108 VIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 108 vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
+|+|.|..|+||||+|+.+...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7899999999999999998765
No 342
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=90.02 E-value=0.62 Score=50.34 Aligned_cols=25 Identities=40% Similarity=0.413 Sum_probs=22.4
Q ss_pred CcEEEEEEccCCchHHHHHHHHHhc
Q 039990 105 NFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 105 ~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
...+++|+|..|+||||+++.++..
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4589999999999999999998865
No 343
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=89.98 E-value=0.15 Score=50.90 Aligned_cols=22 Identities=32% Similarity=0.412 Sum_probs=20.2
Q ss_pred EEEEEccCCchHHHHHHHHHhc
Q 039990 108 VIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 108 vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.|+|.|..|+||||+|+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998875
No 344
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=89.82 E-value=0.18 Score=49.40 Aligned_cols=24 Identities=29% Similarity=0.337 Sum_probs=21.4
Q ss_pred cEEEEEEccCCchHHHHHHHHHhc
Q 039990 106 FRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 106 ~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
-.+|+|.|+.|+||||+|+.+...
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999998765
No 345
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=89.80 E-value=0.19 Score=52.22 Aligned_cols=23 Identities=22% Similarity=0.310 Sum_probs=21.1
Q ss_pred EEEEEEccCCchHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.+|+|.|..|.||||||+.+...
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 69999999999999999998764
No 346
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=89.74 E-value=0.19 Score=50.76 Aligned_cols=23 Identities=39% Similarity=0.476 Sum_probs=21.2
Q ss_pred EEEEEEccCCchHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.+|.|.|+.|+||||+|+.+...
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 78999999999999999998765
No 347
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=89.72 E-value=0.12 Score=49.82 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=20.8
Q ss_pred EEEEEEccCCchHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
++|+|+|..|.|||||++.+...
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999998765
No 348
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=89.70 E-value=0.2 Score=51.02 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=20.6
Q ss_pred cEEEEEEccCCchHHHHHHHHHh
Q 039990 106 FRVIPLVGMGGIGKTTLAQEVYN 128 (1217)
Q Consensus 106 ~~vv~I~G~gGiGKTtLA~~v~~ 128 (1217)
..+|+|.|+.|+||||+|+.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999764
No 349
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=89.66 E-value=0.26 Score=59.83 Aligned_cols=51 Identities=31% Similarity=0.305 Sum_probs=37.3
Q ss_pred CccccchhhHHHHHHHHhc----CC---CCCCCCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 79 PAVYGRNEDKARILDMVLK----ND---PSDAANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~----~~---~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.++.|-++.+++|.+.+.- .+ .-+...++-|.++|++|.|||+||+++++.
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~e 261 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTT
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4678888888888776532 11 001134578899999999999999999986
No 350
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=89.66 E-value=0.18 Score=53.20 Aligned_cols=23 Identities=22% Similarity=0.430 Sum_probs=21.2
Q ss_pred EEEEEEccCCchHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
++|+|.|+.|+||||||..++..
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred cEEEEECCCcCCHHHHHHHHHHh
Confidence 68999999999999999998875
No 351
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=89.66 E-value=0.2 Score=47.64 Aligned_cols=23 Identities=35% Similarity=0.414 Sum_probs=21.2
Q ss_pred EEEEEEccCCchHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.+++|.|..|.|||||++.++.-
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 69999999999999999998864
No 352
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=89.60 E-value=0.15 Score=53.78 Aligned_cols=50 Identities=22% Similarity=0.186 Sum_probs=32.5
Q ss_pred CccccchhhHHHHHHHHhcCC--------CCCCCCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 79 PAVYGRNEDKARILDMVLKND--------PSDAANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~--------~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.++.|-++.+++|.+.+...- -+- .-.+-+.|+|++|.||||||+.++..
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l-~~~~GvlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGL-VTPAGVLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTC-CCCSEEEEESSTTSCHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCC-CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 457788887777766542100 000 11122899999999999999999875
No 353
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=89.59 E-value=0.27 Score=48.79 Aligned_cols=25 Identities=28% Similarity=0.256 Sum_probs=21.5
Q ss_pred CcEEEEEEccCCchHHHHHHHHHhc
Q 039990 105 NFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 105 ~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
....|+|+|.+|+|||||+..+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3457889999999999999998765
No 354
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=89.56 E-value=0.17 Score=52.80 Aligned_cols=23 Identities=35% Similarity=0.495 Sum_probs=21.1
Q ss_pred EEEEEEccCCchHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.+|+|+|+.|.||||+++.+...
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~ 50 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAES 50 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999998864
No 355
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=89.55 E-value=0.18 Score=48.69 Aligned_cols=25 Identities=24% Similarity=0.415 Sum_probs=22.1
Q ss_pred CcEEEEEEccCCchHHHHHHHHHhc
Q 039990 105 NFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 105 ~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
..++++|+|..|+|||||+..+...
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHh
Confidence 3578999999999999999998865
No 356
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=89.54 E-value=0.18 Score=53.98 Aligned_cols=24 Identities=33% Similarity=0.324 Sum_probs=21.8
Q ss_pred cEEEEEEccCCchHHHHHHHHHhc
Q 039990 106 FRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 106 ~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.++|.|+|+.|+||||||+.++..
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999998876
No 357
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=89.50 E-value=0.27 Score=53.21 Aligned_cols=44 Identities=20% Similarity=0.225 Sum_probs=30.8
Q ss_pred CCcEEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCccc
Q 039990 104 ANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDFD 148 (1217)
Q Consensus 104 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~~~ 148 (1217)
...++|+|+|-||+||||+|..++....+... .++-|++....+
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~-~VlliD~D~~~~ 82 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGK-RVLQIGCDPKHD 82 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTC-CEEEEEESSSCC
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHCCC-eEEEEeCCCCCC
Confidence 45689999999999999999988765322222 466777665443
No 358
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=89.49 E-value=0.25 Score=52.75 Aligned_cols=58 Identities=24% Similarity=0.199 Sum_probs=36.0
Q ss_pred hhhHHHHHHHHhcCCCC--CCCCcEEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEe
Q 039990 85 NEDKARILDMVLKNDPS--DAANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCV 143 (1217)
Q Consensus 85 ~~~~~~l~~~L~~~~~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~ 143 (1217)
..-.+++.+.+.....- .....++|+|+|.+|+||||++..++... +..=..+.++..
T Consensus 81 ~~~~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l-~~~g~kV~lv~~ 140 (306)
T 1vma_A 81 ESLKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMF-VDEGKSVVLAAA 140 (306)
T ss_dssp HHHHHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHH-HHTTCCEEEEEE
T ss_pred HHHHHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHHHH-HhcCCEEEEEcc
Confidence 34456666666443210 01346899999999999999999988652 222123455544
No 359
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=89.44 E-value=0.18 Score=50.78 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=21.0
Q ss_pred EEEEEEccCCchHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.+++|+|..|+|||||++.+..-
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 59999999999999999998764
No 360
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=89.44 E-value=0.19 Score=49.01 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=20.9
Q ss_pred EEEEEEccCCchHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
+.|.|.|..|+||||||.++..+
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 67899999999999999998865
No 361
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=89.38 E-value=0.14 Score=51.94 Aligned_cols=23 Identities=30% Similarity=0.579 Sum_probs=20.9
Q ss_pred EEEEEEccCCchHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.+++|+|+.|+|||||++.+...
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 58999999999999999998864
No 362
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=89.37 E-value=0.22 Score=52.50 Aligned_cols=25 Identities=36% Similarity=0.290 Sum_probs=22.4
Q ss_pred CcEEEEEEccCCchHHHHHHHHHhc
Q 039990 105 NFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 105 ~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
..++|.|.|+.|+||||||.+++..
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHHh
Confidence 3578999999999999999999875
No 363
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=89.36 E-value=0.2 Score=54.88 Aligned_cols=42 Identities=26% Similarity=0.334 Sum_probs=32.3
Q ss_pred EEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCcccH
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDFDI 149 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~~~~ 149 (1217)
+++.|.|.+|+||||||.+++....+. =..++|++....++.
T Consensus 64 ~ii~I~G~pGsGKTtLal~la~~~~~~-g~~vlyid~E~s~~~ 105 (356)
T 1u94_A 64 RIVEIYGPESSGKTTLTLQVIAAAQRE-GKTCAFIDAEHALDP 105 (356)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEESSCCCCH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEeCCCCccH
Confidence 689999999999999999988653222 236889998776653
No 364
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=89.33 E-value=0.15 Score=52.85 Aligned_cols=23 Identities=43% Similarity=0.563 Sum_probs=21.0
Q ss_pred EEEEEEccCCchHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.+|+|+|+.|.||||+++.+...
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 48999999999999999998875
No 365
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=89.25 E-value=0.39 Score=51.77 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=21.6
Q ss_pred cEEEEEEccCCchHHHHHHHHHhc
Q 039990 106 FRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 106 ~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
..+|+|+|..|.|||||++.+...
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 479999999999999999998764
No 366
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=89.21 E-value=0.19 Score=53.77 Aligned_cols=25 Identities=36% Similarity=0.494 Sum_probs=22.2
Q ss_pred CcEEEEEEccCCchHHHHHHHHHhc
Q 039990 105 NFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 105 ~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
...+|+|+|.+|+||||+++.++..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagl 125 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRY 125 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3469999999999999999998865
No 367
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=89.14 E-value=0.21 Score=52.93 Aligned_cols=33 Identities=21% Similarity=0.261 Sum_probs=25.5
Q ss_pred EEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEe
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCV 143 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~ 143 (1217)
+++.|+|++|+|||+||.+++.. .-..++|+++
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~----~G~~VlyIs~ 156 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA----LGGKDKYATV 156 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH----HHTTSCCEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh----CCCCEEEEEe
Confidence 57789999999999999998864 1123567776
No 368
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=89.14 E-value=0.3 Score=54.81 Aligned_cols=51 Identities=18% Similarity=0.278 Sum_probs=35.4
Q ss_pred CccccchhhHHHHHHHHhcC--------CCCCCCCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 79 PAVYGRNEDKARILDMVLKN--------DPSDAANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
..++|.++.+..+...+... ........+-|.++|++|+|||++|+.++..
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~ 73 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHH
Confidence 45889888887776665221 0000012356889999999999999999876
No 369
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=89.11 E-value=0.18 Score=50.97 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=21.1
Q ss_pred EEEEEEccCCchHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.+++|+|+.|+|||||.+.+...
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 69999999999999999998765
No 370
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=88.87 E-value=0.21 Score=50.85 Aligned_cols=23 Identities=22% Similarity=0.439 Sum_probs=21.1
Q ss_pred EEEEEEccCCchHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.+|+|.|++|.||||+|+.+...
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999998865
No 371
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=88.85 E-value=0.25 Score=59.11 Aligned_cols=43 Identities=26% Similarity=0.324 Sum_probs=36.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 79 PAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.+++|.+..++.+...+... ..+.|+|.+|+||||||+.++..
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g--------~~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK--------RHVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT--------CCEEEECCTTSSHHHHHHHHHHT
T ss_pred ceEECchhhHhhccccccCC--------CEEEEEeCCCCCHHHHHHHHhcc
Confidence 46899988888887777643 37899999999999999999875
No 372
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=88.81 E-value=0.2 Score=58.79 Aligned_cols=51 Identities=25% Similarity=0.361 Sum_probs=34.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 79 PAVYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.+++|-++....+.+.+.-...........+.++|++|+||||||+.++..
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 457888877776655442211000012358999999999999999998875
No 373
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=88.78 E-value=0.21 Score=50.27 Aligned_cols=22 Identities=23% Similarity=0.440 Sum_probs=20.5
Q ss_pred EEEEEccCCchHHHHHHHHHhc
Q 039990 108 VIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 108 vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
+|+|.|..|+||||+|+.+...
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 8999999999999999998875
No 374
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=88.75 E-value=0.19 Score=49.52 Aligned_cols=22 Identities=36% Similarity=0.458 Sum_probs=20.1
Q ss_pred EEEEEccCCchHHHHHHHHHhc
Q 039990 108 VIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 108 vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
+++|+|..|+|||||++.++..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 6899999999999999998865
No 375
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=88.74 E-value=0.23 Score=54.38 Aligned_cols=42 Identities=26% Similarity=0.272 Sum_probs=32.0
Q ss_pred EEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCcccH
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDFDI 149 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~~~~ 149 (1217)
+++.|+|.+|+||||||.+++... ...=..++|++....++.
T Consensus 62 ~iv~I~G~pGsGKTtLal~la~~~-~~~g~~vlyi~~E~~~~~ 103 (349)
T 2zr9_A 62 RVIEIYGPESSGKTTVALHAVANA-QAAGGIAAFIDAEHALDP 103 (349)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH-HHTTCCEEEEESSCCCCH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH-HhCCCeEEEEECCCCcCH
Confidence 689999999999999999988653 222235789988766654
No 376
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=88.73 E-value=0.29 Score=52.82 Aligned_cols=26 Identities=35% Similarity=0.500 Sum_probs=22.9
Q ss_pred CCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 104 ANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 104 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
...++|+|+|.+|+||||++..++..
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~ 128 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANY 128 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44689999999999999999998765
No 377
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=88.73 E-value=0.2 Score=50.85 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=20.7
Q ss_pred EEEEEEccCCchHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
..|.|.|++|+||||+|+.+...
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47889999999999999998875
No 378
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=88.73 E-value=0.46 Score=50.97 Aligned_cols=50 Identities=12% Similarity=0.197 Sum_probs=32.2
Q ss_pred EEEEEEccCCchHHHHHHHHHhccccCCCC-CeEEEEeCCcccHHHHHHHHHHH
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDKLTDDFK-PKAWVCVSDDFDILRISKAILES 159 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~-~~~wv~~~~~~~~~~~~~~i~~~ 159 (1217)
.+++|.|.+|+|||||++.++... ...-. .++|+.... ...++...+...
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~~-~~~~G~~v~~~~~e~--~~~~~~~r~~~~ 86 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQW-GTAMGKKVGLAMLEE--SVEETAEDLIGL 86 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH-HHTSCCCEEEEESSS--CHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHH-HHHcCCeEEEEeCcC--CHHHHHHHHHHH
Confidence 599999999999999999988753 22222 466666433 334444444333
No 379
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=88.73 E-value=0.46 Score=54.54 Aligned_cols=52 Identities=31% Similarity=0.349 Sum_probs=34.6
Q ss_pred CCccccchhhHHHHHHHHh---cCCC---CCCCCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 78 EPAVYGRNEDKARILDMVL---KNDP---SDAANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 78 ~~~~vGr~~~~~~l~~~L~---~~~~---~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
-.+++|.++.+.++.+... .... -+..-.+-|.|+|.+|+|||+||++++..
T Consensus 30 f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 30 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred HHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 3568999887766655442 2100 00011234899999999999999999876
No 380
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=88.72 E-value=0.47 Score=51.59 Aligned_cols=54 Identities=19% Similarity=0.239 Sum_probs=38.0
Q ss_pred EEEEEEccCCchHHHHHHHHHhcc-ccC---------CC-----CCeEEEEeCCcccHHHHHHHHHHHhh
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDK-LTD---------DF-----KPKAWVCVSDDFDILRISKAILESIT 161 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~-~~~---------~F-----~~~~wv~~~~~~~~~~~~~~i~~~l~ 161 (1217)
.++.|+|.+|+|||++|.+++... ... .. ..++|++....++..++.+ +++.++
T Consensus 99 ~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g 167 (322)
T 2i1q_A 99 SVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAG 167 (322)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcC
Confidence 799999999999999999987642 111 11 3678998888776666554 344443
No 381
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=88.68 E-value=0.22 Score=51.27 Aligned_cols=23 Identities=30% Similarity=0.338 Sum_probs=21.0
Q ss_pred EEEEEEccCCchHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
..|.|.|++|+||||+|+.+.+.
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999998875
No 382
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=88.63 E-value=0.21 Score=50.65 Aligned_cols=22 Identities=36% Similarity=0.312 Sum_probs=19.8
Q ss_pred EEEEEccCCchHHHHHHHHHhc
Q 039990 108 VIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 108 vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.|+|.|++|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998875
No 383
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=88.63 E-value=0.21 Score=50.95 Aligned_cols=22 Identities=32% Similarity=0.362 Sum_probs=20.0
Q ss_pred EEEEEccCCchHHHHHHHHHhc
Q 039990 108 VIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 108 vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.|+|.|++|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999998875
No 384
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=88.57 E-value=0.26 Score=51.89 Aligned_cols=26 Identities=35% Similarity=0.401 Sum_probs=22.5
Q ss_pred CCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 104 ANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 104 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
....++.+.|.||+||||++..++..
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~ 37 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRY 37 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHH
Confidence 45678999999999999999998754
No 385
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=88.54 E-value=0.49 Score=48.29 Aligned_cols=36 Identities=22% Similarity=0.278 Sum_probs=27.4
Q ss_pred EEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEE
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVC 142 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~ 142 (1217)
..|+|.|..|+||||+|+.+.+......+..+....
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~r 63 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTR 63 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeec
Confidence 589999999999999999988764334555444443
No 386
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=88.45 E-value=0.23 Score=49.63 Aligned_cols=22 Identities=27% Similarity=0.505 Sum_probs=20.0
Q ss_pred EEEEEccCCchHHHHHHHHHhc
Q 039990 108 VIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 108 vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
+|.|.|++|+||+|.|+.++++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999998876
No 387
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=88.40 E-value=0.26 Score=52.72 Aligned_cols=39 Identities=31% Similarity=0.359 Sum_probs=27.6
Q ss_pred CcEEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCC
Q 039990 105 NFRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSD 145 (1217)
Q Consensus 105 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~ 145 (1217)
...+++|+|..|+||||+++.++.. .+. -.+.+++....
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~-l~~-~~g~V~l~g~d 137 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHR-LKN-EGTKVLMAAGD 137 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHH-HHH-TTCCEEEECCC
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH-HHH-cCCeEEEEeec
Confidence 4579999999999999999998875 222 13445554333
No 388
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=88.23 E-value=0.23 Score=48.69 Aligned_cols=119 Identities=14% Similarity=0.145 Sum_probs=59.2
Q ss_pred hhhhcCCCCcceEEEcCCC-CcccccccccccccChhhhcccccCcEEecccccccc-----cccccccccccccEEeec
Q 039990 474 LSDLLPKCKKLRVLSLEKD-NIAEVPISIGCLKCLPEAITSLFNLEILILSYCWCLL-----KLPSSIGNLVNLHHLDIE 547 (1217)
Q Consensus 474 ~~~~~~~l~~Lr~L~L~~~-~i~~lp~~i~~L~~lp~~i~~L~~L~~L~L~~~~~l~-----~lp~~i~~L~~L~~L~l~ 547 (1217)
+...+..-..|+.|+|+++ .|..-- ...+-+.+..-+.|+.|+|++| .+. .+-..+..-+.|++|+|+
T Consensus 33 l~~ll~~n~~L~~L~L~~nn~igd~g-----a~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~ 106 (197)
T 1pgv_A 33 INRLREDDTDLKEVNINNMKRVSKER-----IRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVE 106 (197)
T ss_dssp HHHHHTTCSSCCEEECTTCCSSCHHH-----HHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECC
T ss_pred HHHHHhcCCCccEEECCCCCCCCHHH-----HHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecC
Confidence 3444556667777777764 554210 0023345556667777777776 343 233344455677777777
Q ss_pred CCccccc-----cCCCCccCccccccccccc---ccChh--hhHHHHhcCCCCCCeEEEEec
Q 039990 548 GADRLCE-----LPLGMKELKCLRTLTDFIN---VIDSQ--EANEAMLRGKKDLEVLKLVWS 599 (1217)
Q Consensus 548 ~~~~l~~-----lp~~i~~L~~L~~L~~~~n---~~~~~--~~~~~~l~~l~~L~~L~l~~~ 599 (1217)
+| .++. +-..+..-+.|++|++..+ .+... .+....+..-+.|+.|++.++
T Consensus 107 ~N-~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 107 SN-FLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp SS-BCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred CC-cCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 77 4431 1112333344555554322 11211 123334555566666666543
No 389
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=88.08 E-value=0.51 Score=53.38 Aligned_cols=41 Identities=27% Similarity=0.393 Sum_probs=28.8
Q ss_pred CcEEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCcc
Q 039990 105 NFRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDF 147 (1217)
Q Consensus 105 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~~ 147 (1217)
...+++|+|..|+|||||++.++.. .+. -.+.+++.....+
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgl-l~~-~~G~V~l~g~D~~ 332 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQ-FEQ-QGKSVMLAAGDTF 332 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHH-HHH-TTCCEEEECCCTT
T ss_pred CCeEEEEECCCcccHHHHHHHHHHH-hhh-cCCeEEEecCccc
Confidence 4579999999999999999998865 221 2345555444433
No 390
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=88.04 E-value=0.32 Score=46.76 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=20.5
Q ss_pred EEEEEEccCCchHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999998764
No 391
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=87.99 E-value=0.51 Score=48.17 Aligned_cols=24 Identities=42% Similarity=0.574 Sum_probs=21.9
Q ss_pred cEEEEEEccCCchHHHHHHHHHhc
Q 039990 106 FRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 106 ~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
-..|+|.|+.|+||||+++.+...
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 378999999999999999999876
No 392
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=87.89 E-value=0.61 Score=46.78 Aligned_cols=51 Identities=18% Similarity=0.225 Sum_probs=32.0
Q ss_pred EEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCcccHHHHHHHHH
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDFDILRISKAIL 157 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 157 (1217)
..|+|-|..|+||||+++.+.+......+..+++..-.....+.+..++++
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~rep~~t~~g~~ir~~l 54 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGTQLAEKLRSLL 54 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceeeeCCCCCHHHHHHHHHH
Confidence 588999999999999999988764334453444433322222334444443
No 393
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=87.85 E-value=0.26 Score=51.46 Aligned_cols=22 Identities=36% Similarity=0.475 Sum_probs=20.1
Q ss_pred EEEEEEccCCchHHHHHHHHHh
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYN 128 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~ 128 (1217)
.+++|+|+.|+|||||++.++.
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHH
Confidence 5999999999999999998873
No 394
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=87.81 E-value=0.25 Score=55.84 Aligned_cols=25 Identities=40% Similarity=0.498 Sum_probs=22.3
Q ss_pred CcEEEEEEccCCchHHHHHHHHHhc
Q 039990 105 NFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 105 ~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
...+|.|+|++|+||||+|++++.+
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4579999999999999999998875
No 395
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=87.77 E-value=0.28 Score=52.90 Aligned_cols=23 Identities=35% Similarity=0.557 Sum_probs=20.9
Q ss_pred EEEEEEccCCchHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.+|.|.|++|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 68999999999999999998863
No 396
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=87.75 E-value=0.32 Score=50.54 Aligned_cols=38 Identities=29% Similarity=0.416 Sum_probs=27.9
Q ss_pred EEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCC
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSD 145 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~ 145 (1217)
.++.|.|.+|+||||||.+++...... =..++|++...
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~~~~~-~~~v~~~~~e~ 61 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWNGLKM-GEPGIYVALEE 61 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHHT-TCCEEEEESSS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEEccC
Confidence 589999999999999998877653222 23577777544
No 397
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=87.75 E-value=0.34 Score=49.64 Aligned_cols=33 Identities=15% Similarity=0.307 Sum_probs=25.0
Q ss_pred EEEEEEccCCchHHHHHHHHHhccccCCCCCeEEE
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWV 141 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv 141 (1217)
.+++|+|..|.|||||.+.+..- .....+.+++
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl--~~p~~G~I~~ 64 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCL--DKPTEGEVYI 64 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS--SCCSEEEEEE
T ss_pred CEEEEECCCCCcHHHHHHHHhcC--CCCCceEEEE
Confidence 58999999999999999997753 2233455555
No 398
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=87.75 E-value=0.15 Score=54.36 Aligned_cols=24 Identities=21% Similarity=0.378 Sum_probs=18.5
Q ss_pred cEEEEEEccCCchHHHHHHHHHhc
Q 039990 106 FRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 106 ~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
..+|+|.|..|+||||+|+.+.+.
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998764
No 399
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=87.69 E-value=0.18 Score=51.86 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=15.8
Q ss_pred EEEEEEccCCchHHHHHHHHH-hc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVY-ND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~-~~ 129 (1217)
.+++|+|+.|+|||||++.+. ..
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC--
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 589999999999999999988 53
No 400
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=87.63 E-value=0.47 Score=50.02 Aligned_cols=40 Identities=28% Similarity=0.329 Sum_probs=28.5
Q ss_pred EEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCcc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDF 147 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~~ 147 (1217)
++|+|.|-||+||||+|..++....+.. ..++-|+.....
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G-~~VlliD~D~q~ 41 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMG-KTIMVVGCDPKA 41 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTT-CCEEEEEECTTS
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCC-CcEEEEcCCCCC
Confidence 6788899999999999999886532222 246667765443
No 401
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=87.61 E-value=0.66 Score=51.63 Aligned_cols=54 Identities=15% Similarity=0.166 Sum_probs=34.3
Q ss_pred EEEEEEccCCchHHHHHHHHHhcc-ccC----CCCCeEEEEeCCcccHHHHHHHHHHHhh
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDK-LTD----DFKPKAWVCVSDDFDILRISKAILESIT 161 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~-~~~----~F~~~~wv~~~~~~~~~~~~~~i~~~l~ 161 (1217)
.++.|+|.+|+||||||..++-.. ... .-..++|++....++...+. .+++.++
T Consensus 179 ei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~-~~a~~~g 237 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLV-SIAQRFG 237 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTT
T ss_pred cEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHH-HHHHHcC
Confidence 599999999999999999765321 111 22357888876655443332 2444443
No 402
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=87.60 E-value=0.32 Score=46.31 Aligned_cols=23 Identities=22% Similarity=0.463 Sum_probs=20.5
Q ss_pred EEEEEEccCCchHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
+.|+|+|.+|+|||||+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999998765
No 403
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=87.59 E-value=0.25 Score=48.45 Aligned_cols=118 Identities=9% Similarity=0.009 Sum_probs=67.6
Q ss_pred hhhcccccCcEEecccccccc-----cccccccccccccEEeecCCcccccc-----CCCCccCcccccccccccccChh
Q 039990 509 EAITSLFNLEILILSYCWCLL-----KLPSSIGNLVNLHHLDIEGADRLCEL-----PLGMKELKCLRTLTDFINVIDSQ 578 (1217)
Q Consensus 509 ~~i~~L~~L~~L~L~~~~~l~-----~lp~~i~~L~~L~~L~l~~~~~l~~l-----p~~i~~L~~L~~L~~~~n~~~~~ 578 (1217)
..+.+-..|+.|+|+++..+. .+-..+..-+.|++|+|++| .+..- -..+..-+.|++|++..|.+...
T Consensus 35 ~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~ 113 (197)
T 1pgv_A 35 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNFLTPE 113 (197)
T ss_dssp HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHH
T ss_pred HHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCCcCCHH
Confidence 345556789999998752342 34455677789999999999 55422 11233446677777777666644
Q ss_pred h--hHHHHhcCCCCCCeEEEEecCC-CCchhhHHHHhcccCCCCCccEEEEE
Q 039990 579 E--ANEAMLRGKKDLEVLKLVWSGG-PVDELREKNILDMLKPHCNIKRLEII 627 (1217)
Q Consensus 579 ~--~~~~~l~~l~~L~~L~l~~~~~-~~~~~~~~~~l~~l~~~~~L~~L~l~ 627 (1217)
. +....+..-+.|+.|++..+.. .........+.+.|..-+.|..|++.
T Consensus 114 Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~ 165 (197)
T 1pgv_A 114 LLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGIS 165 (197)
T ss_dssp HHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred HHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEecc
Confidence 3 2333455555677776653222 22233333444455555555555544
No 404
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=87.37 E-value=1.4 Score=50.54 Aligned_cols=56 Identities=20% Similarity=0.274 Sum_probs=33.2
Q ss_pred hHHHHHHHHhcCCCC---CCCCcEEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEe
Q 039990 87 DKARILDMVLKNDPS---DAANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCV 143 (1217)
Q Consensus 87 ~~~~l~~~L~~~~~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~ 143 (1217)
-.++|.+.+...... .....++|+|+|.+|+||||++.+++....+... .+..|+.
T Consensus 79 v~~eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~-kVllVd~ 137 (504)
T 2j37_W 79 VFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGW-KTCLICA 137 (504)
T ss_dssp HHHHHHHHHCCCCCCCCCCSS--EEEEEECSTTSSHHHHHHHHHHHHHHTTC-CEEEEEE
T ss_pred HHHHHHHHhccccchhccccCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCC-eEEEEec
Confidence 345555666442211 0134689999999999999999998865322222 2445554
No 405
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=87.31 E-value=0.45 Score=49.76 Aligned_cols=33 Identities=18% Similarity=0.324 Sum_probs=25.5
Q ss_pred EEEEEEccCCchHHHHHHHHHhccccCCCCCeEEE
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWV 141 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv 141 (1217)
.+++|+|..|.|||||++.+..- .....+.+++
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl--~~p~~G~I~~ 70 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGY--LSPSHGECHL 70 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSS--SCCSSCEEEE
T ss_pred CEEEEECCCCCcHHHHHHHHhcC--CCCCCcEEEE
Confidence 48999999999999999998763 2333456655
No 406
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=87.27 E-value=0.37 Score=50.57 Aligned_cols=33 Identities=24% Similarity=0.317 Sum_probs=25.0
Q ss_pred EEEEEEccCCchHHHHHHHHHhccccCCCCCeEEE
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWV 141 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv 141 (1217)
.+++|+|..|.|||||++.+..- .....+.+++
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl--~~p~~G~I~~ 67 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGI--LKPSSGRILF 67 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTS--SCCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcC--CCCCCeEEEE
Confidence 48999999999999999998763 2333455554
No 407
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=87.24 E-value=0.87 Score=49.17 Aligned_cols=52 Identities=17% Similarity=0.228 Sum_probs=36.3
Q ss_pred EEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCcccHHHHHHHHHHHhh
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDFDILRISKAILESIT 161 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~ 161 (1217)
.++.|.|.+|+||||+|..++..... .=..++|++. ..+..++...++....
T Consensus 47 ~LiiIaG~pG~GKTt~al~ia~~~a~-~g~~Vl~fSl--Ems~~ql~~Rlls~~~ 98 (338)
T 4a1f_A 47 SLVIIGARPSMGKTSLMMNMVLSALN-DDRGVAVFSL--EMSAEQLALRALSDLT 98 (338)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHH-TTCEEEEEES--SSCHHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHH-cCCeEEEEeC--CCCHHHHHHHHHHHhh
Confidence 58899999999999999998876322 1134667665 4456677777666554
No 408
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=87.23 E-value=0.29 Score=50.26 Aligned_cols=23 Identities=22% Similarity=0.276 Sum_probs=20.9
Q ss_pred EEEEEEccCCchHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.+++|+|..|.|||||.+.++.-
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999998763
No 409
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=87.18 E-value=0.44 Score=50.55 Aligned_cols=23 Identities=39% Similarity=0.496 Sum_probs=20.8
Q ss_pred EEEEEEccCCchHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.++.|+|.+|+||||||..++..
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 59999999999999999998764
No 410
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=87.14 E-value=0.33 Score=53.34 Aligned_cols=43 Identities=23% Similarity=0.241 Sum_probs=32.8
Q ss_pred EEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCcccHH
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDFDIL 150 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~~~~~ 150 (1217)
+++.|+|.+|+||||||.+++....+. =..++|++....++..
T Consensus 75 ~li~I~G~pGsGKTtlal~la~~~~~~-g~~vlyi~~E~s~~~~ 117 (366)
T 1xp8_A 75 RITEIYGPESGGKTTLALAIVAQAQKA-GGTCAFIDAEHALDPV 117 (366)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHT-TCCEEEEESSCCCCHH
T ss_pred cEEEEEcCCCCChHHHHHHHHHHHHHC-CCeEEEEECCCChhHH
Confidence 588899999999999999987653222 2368899988766543
No 411
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=87.11 E-value=0.34 Score=52.93 Aligned_cols=25 Identities=36% Similarity=0.408 Sum_probs=22.5
Q ss_pred CcEEEEEEccCCchHHHHHHHHHhc
Q 039990 105 NFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 105 ~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
...+++|+|..|+||||+++.++..
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhh
Confidence 4579999999999999999998875
No 412
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=87.10 E-value=0.31 Score=48.27 Aligned_cols=24 Identities=25% Similarity=0.488 Sum_probs=21.1
Q ss_pred cEEEEEEccCCchHHHHHHHHHhc
Q 039990 106 FRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 106 ~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.-.|+|+|..|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 357899999999999999998765
No 413
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=87.04 E-value=0.61 Score=49.21 Aligned_cols=50 Identities=10% Similarity=0.032 Sum_probs=36.5
Q ss_pred EEEEEccCCchHHHHHHHHHhccccCCC--CCeEEEEeCCcccHHHHHHHHHHHhhcC
Q 039990 108 VIPLVGMGGIGKTTLAQEVYNDKLTDDF--KPKAWVCVSDDFDILRISKAILESITRS 163 (1217)
Q Consensus 108 vv~I~G~gGiGKTtLA~~v~~~~~~~~F--~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 163 (1217)
++-|+|.+|+||||||.+++... ...+ ..++||+....++.. .+++++.+
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~-~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd 81 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSY-MRQYPDAVCLFYDSEFGITPA-----YLRSMGVD 81 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH-HHHCTTCEEEEEESSCCCCHH-----HHHHTTCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHH-HhcCCCceEEEEeccchhhHH-----HHHHhCCC
Confidence 68999999999999999987653 2222 357899888777653 26666644
No 414
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=87.03 E-value=0.48 Score=48.90 Aligned_cols=33 Identities=18% Similarity=0.171 Sum_probs=25.4
Q ss_pred EEEEEEccCCchHHHHHHHHHhccccCCCCCeEEE
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWV 141 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv 141 (1217)
.+++|+|..|.|||||.+.++.- .....+.+++
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~ 61 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERF--YQPTAGEITI 61 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTS--SCCSBSCEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcC--CCCCCcEEEE
Confidence 69999999999999999998763 2233455554
No 415
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=86.99 E-value=0.4 Score=50.12 Aligned_cols=33 Identities=24% Similarity=0.289 Sum_probs=25.1
Q ss_pred EEEEEEccCCchHHHHHHHHHhccccCCCCCeEEE
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWV 141 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv 141 (1217)
.+++|+|..|.|||||.+.++.- .....+.+++
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl--~~p~~G~i~~ 65 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFL--EKPSEGAIIV 65 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS--SCCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcC--CCCCCcEEEE
Confidence 58999999999999999998763 2233455555
No 416
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=86.99 E-value=0.28 Score=48.23 Aligned_cols=22 Identities=41% Similarity=0.567 Sum_probs=19.4
Q ss_pred EEEEEccCCchHHHHHHHHHhc
Q 039990 108 VIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 108 vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
-|+|+|.+|+|||||+..+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998763
No 417
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=86.91 E-value=0.53 Score=51.87 Aligned_cols=23 Identities=35% Similarity=0.255 Sum_probs=21.2
Q ss_pred EEEEEEccCCchHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
++++|+|++|.|||||++.++..
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 69999999999999999998864
No 418
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=86.85 E-value=0.36 Score=54.45 Aligned_cols=43 Identities=26% Similarity=0.327 Sum_probs=28.9
Q ss_pred hHHHHHHHHhcCCCC---CCCCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 87 DKARILDMVLKNDPS---DAANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 87 ~~~~l~~~L~~~~~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
..+++.+.+...... .....++|+|+|.+|+||||+|..++..
T Consensus 77 ~~~~l~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTla~~La~~ 122 (432)
T 2v3c_C 77 VYEELVKLLGEEAKKLELNPKKQNVILLVGIQGSGKTTTAAKLARY 122 (432)
T ss_dssp HHHHHHHHHCCSCCCCCCCSSSCCCEEEECCSSSSTTHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcCccccCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 345566666433110 0023579999999999999999998765
No 419
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=86.84 E-value=0.34 Score=51.75 Aligned_cols=40 Identities=25% Similarity=0.238 Sum_probs=28.5
Q ss_pred EEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCcc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDF 147 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~~ 147 (1217)
++|+|.|-||+||||+|..++....+..+ .++-|+.....
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~La~~G~-rVlliD~D~q~ 42 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAALAEMGK-KVMIVGCDPKA 42 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTTC-CEEEEEECSSS
T ss_pred eEEEEeCCCcCcHHHHHHHHHHHHHHCCC-eEEEEecCCCC
Confidence 78889999999999999998865322222 45667665443
No 420
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=86.82 E-value=1.2 Score=47.24 Aligned_cols=38 Identities=32% Similarity=0.176 Sum_probs=27.4
Q ss_pred cEEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeC
Q 039990 106 FRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVS 144 (1217)
Q Consensus 106 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~ 144 (1217)
.++++++|.+|+||||++..++... ...=..+.++...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~-~~~g~~v~l~~~D 135 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFY-KKKGFKVGLVGAD 135 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHH-HHTTCCEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH-HHCCCeEEEEecC
Confidence 6899999999999999999987653 2221245566544
No 421
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=86.82 E-value=0.68 Score=50.21 Aligned_cols=46 Identities=20% Similarity=0.219 Sum_probs=31.9
Q ss_pred cEEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCcccHHHH
Q 039990 106 FRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDFDILRI 152 (1217)
Q Consensus 106 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~~~~~~~ 152 (1217)
.+++.+.|-||+||||+|..++... ...=..++-|+.....++...
T Consensus 16 ~~i~~~sgkGGvGKTt~a~~lA~~l-a~~g~~vllid~D~~~~l~~~ 61 (334)
T 3iqw_A 16 LRWIFVGGKGGVGKTTTSCSLAIQL-AKVRRSVLLLSTDPAHNLSDA 61 (334)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH-TTSSSCEEEEECCSSCHHHHH
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHH-HhCCCcEEEEECCCCCChhHH
Confidence 4688889999999999999987652 222235667777655544433
No 422
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=86.80 E-value=0.3 Score=49.69 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=20.6
Q ss_pred EEEEEEccCCchHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.+++|+|..|.|||||.+.++.-
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999998753
No 423
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=86.74 E-value=0.96 Score=45.39 Aligned_cols=31 Identities=19% Similarity=0.183 Sum_probs=24.5
Q ss_pred EEEEEEccCCchHHHHHHHHHhccccCCCCC
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDKLTDDFKP 137 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~ 137 (1217)
..|+|-|+.|+||||+++.+.+......++.
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v 37 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRERGIEV 37 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHTTTCCE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCc
Confidence 6899999999999999999887633334443
No 424
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=86.64 E-value=0.62 Score=51.08 Aligned_cols=41 Identities=22% Similarity=0.327 Sum_probs=29.4
Q ss_pred EEEEEEccCCchHHHHHHHHHhccc-cC---CCCC-eEEEEeCCcc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDKL-TD---DFKP-KAWVCVSDDF 147 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~~-~~---~F~~-~~wv~~~~~~ 147 (1217)
.++.|+|.+|+|||||+..++.... .. ...+ ++||+....+
T Consensus 132 ~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~ 177 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF 177 (349)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC
Confidence 7999999999999999999886521 11 1123 4888765543
No 425
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=86.53 E-value=0.39 Score=51.26 Aligned_cols=25 Identities=36% Similarity=0.359 Sum_probs=22.2
Q ss_pred CcEEEEEEccCCchHHHHHHHHHhc
Q 039990 105 NFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 105 ~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
..++++|+|.+|+||||+|..++..
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~ 121 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALY 121 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3579999999999999999998865
No 426
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=86.48 E-value=0.37 Score=49.83 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=21.3
Q ss_pred EEEEEEccCCchHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
..|+|.|..|+||||+|+.+.+.
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 68999999999999999998876
No 427
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=86.46 E-value=0.34 Score=53.17 Aligned_cols=23 Identities=30% Similarity=0.621 Sum_probs=21.3
Q ss_pred EEEEEEccCCchHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
++|+|.|+.|+||||||..++..
T Consensus 3 ~~i~i~GptgsGKttla~~La~~ 25 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQK 25 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHH
Confidence 68999999999999999998875
No 428
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=86.36 E-value=0.46 Score=49.15 Aligned_cols=33 Identities=27% Similarity=0.302 Sum_probs=25.1
Q ss_pred EEEEEEccCCchHHHHHHHHHhccccCCCCCeEEE
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWV 141 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv 141 (1217)
.+++|+|..|.|||||++.++.- .....+.+++
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl--~~p~~G~I~i 68 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRF--YIPENGQVLI 68 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS--SCCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcC--CCCCCcEEEE
Confidence 48999999999999999998763 2233455555
No 429
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=86.33 E-value=0.52 Score=45.82 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=21.9
Q ss_pred CcEEEEEEccCCchHHHHHHHHHhcc
Q 039990 105 NFRVIPLVGMGGIGKTTLAQEVYNDK 130 (1217)
Q Consensus 105 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 130 (1217)
....|+|+|.+|+|||||...+....
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 34678899999999999999987653
No 430
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=86.29 E-value=0.36 Score=49.66 Aligned_cols=36 Identities=31% Similarity=0.382 Sum_probs=25.8
Q ss_pred EEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEe
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCV 143 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~ 143 (1217)
.+++|+|.+|+|||||++.++...... =..++|+..
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~-~~~v~~~~~ 59 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLRD-GDPCIYVTT 59 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHH-TCCEEEEES
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHC-CCeEEEEEc
Confidence 589999999999999999988542111 124556654
No 431
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=86.28 E-value=0.34 Score=49.74 Aligned_cols=23 Identities=26% Similarity=0.546 Sum_probs=20.8
Q ss_pred EEEEEEccCCchHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.+++|+|..|.|||||++.++.-
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999998764
No 432
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=86.26 E-value=0.27 Score=49.21 Aligned_cols=22 Identities=32% Similarity=0.286 Sum_probs=19.9
Q ss_pred EEEEEEccCCchHHHHHHHHHh
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYN 128 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~ 128 (1217)
.+++|+|..|.|||||++.++.
T Consensus 23 e~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3899999999999999998765
No 433
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=86.19 E-value=0.68 Score=50.50 Aligned_cols=45 Identities=22% Similarity=0.306 Sum_probs=31.3
Q ss_pred CcEEEEEEccCCchHHHHHHHHHhcccc--CCCCCeEEEEeCCcccHH
Q 039990 105 NFRVIPLVGMGGIGKTTLAQEVYNDKLT--DDFKPKAWVCVSDDFDIL 150 (1217)
Q Consensus 105 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~--~~F~~~~wv~~~~~~~~~ 150 (1217)
..+++.+.|.||+||||+|..++.. .. ..=..+.-|+.....++.
T Consensus 17 ~~~i~~~~gkGGvGKTt~a~~lA~~-la~~~~g~~vllid~D~~~~l~ 63 (348)
T 3io3_A 17 SLKWIFVGGKGGVGKTTTSSSVAVQ-LALAQPNEQFLLISTDPAHNLS 63 (348)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHHH-HHHHCTTSCEEEEECCSSCHHH
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHH-HHHhcCCCeEEEEECCCCCChH
Confidence 3478999999999999999988765 22 222346667766554443
No 434
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=86.06 E-value=0.68 Score=48.20 Aligned_cols=42 Identities=26% Similarity=0.245 Sum_probs=29.4
Q ss_pred EEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCcccHHH
Q 039990 109 IPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDFDILR 151 (1217)
Q Consensus 109 v~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~~~~~~ 151 (1217)
|+|.|-||+||||+|..++....+.. ..++-|+.....+...
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g-~~VlliD~D~~~~l~~ 44 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDY-DKIYAVDGDPDSCLGQ 44 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTC-SCEEEEEECTTSCHHH
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCC-CeEEEEeCCCCcChHH
Confidence 66799999999999999887632222 3466777765554443
No 435
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=86.04 E-value=0.39 Score=47.91 Aligned_cols=24 Identities=25% Similarity=0.488 Sum_probs=21.0
Q ss_pred cEEEEEEccCCchHHHHHHHHHhc
Q 039990 106 FRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 106 ~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
...|+|+|.+|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 356899999999999999998765
No 436
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=86.00 E-value=0.8 Score=46.16 Aligned_cols=26 Identities=27% Similarity=0.290 Sum_probs=22.7
Q ss_pred CcEEEEEEccCCchHHHHHHHHHhcc
Q 039990 105 NFRVIPLVGMGGIGKTTLAQEVYNDK 130 (1217)
Q Consensus 105 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 130 (1217)
....|.|.|..|+||||+++.+.+..
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l 45 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYL 45 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34789999999999999999988763
No 437
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=85.97 E-value=0.4 Score=49.39 Aligned_cols=26 Identities=27% Similarity=0.318 Sum_probs=22.4
Q ss_pred CCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 104 ANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 104 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
....+|+|.|+.|.||||+|+.+...
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34568999999999999999998864
No 438
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=85.94 E-value=0.48 Score=49.72 Aligned_cols=33 Identities=33% Similarity=0.358 Sum_probs=25.2
Q ss_pred EEEEEEccCCchHHHHHHHHHhccccCCCCCeEEE
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWV 141 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv 141 (1217)
.+++|+|..|.|||||++.++.- .....+.+++
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl--~~p~~G~I~~ 78 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNL--YQPTGGKVLL 78 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS--SCCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcC--CCCCCCEEEE
Confidence 58999999999999999998763 2233455555
No 439
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=85.81 E-value=0.83 Score=45.85 Aligned_cols=41 Identities=20% Similarity=0.151 Sum_probs=28.7
Q ss_pred EEEEE-ccCCchHHHHHHHHHhccccCCCCCeEEEEeCCcccHH
Q 039990 108 VIPLV-GMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDFDIL 150 (1217)
Q Consensus 108 vv~I~-G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~~~~~ 150 (1217)
+|+|+ +-||+||||+|..++....+.. .++-|+.....+..
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g--~VlliD~D~q~~~~ 43 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG--ETLLIDGDPNRSAT 43 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS--CEEEEEECTTCHHH
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC--CEEEEECCCCCCHH
Confidence 56665 6799999999999887632233 67778776655443
No 440
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=85.69 E-value=0.36 Score=50.32 Aligned_cols=39 Identities=26% Similarity=0.370 Sum_probs=27.1
Q ss_pred EEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCC
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSD 145 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~ 145 (1217)
.++.|.|.+|+|||++|.+++.......-..+++++...
T Consensus 31 ~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~ 69 (251)
T 2zts_A 31 TTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEE 69 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccC
Confidence 588999999999999999876542222223466666543
No 441
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=85.68 E-value=0.33 Score=48.83 Aligned_cols=23 Identities=39% Similarity=0.566 Sum_probs=20.6
Q ss_pred EEEEEEccCCchHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.+++|+|..|.|||||.+.++.-
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999998763
No 442
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=85.66 E-value=0.39 Score=45.93 Aligned_cols=23 Identities=30% Similarity=0.690 Sum_probs=20.1
Q ss_pred EEEEEccCCchHHHHHHHHHhcc
Q 039990 108 VIPLVGMGGIGKTTLAQEVYNDK 130 (1217)
Q Consensus 108 vv~I~G~gGiGKTtLA~~v~~~~ 130 (1217)
.|+|+|.+|+|||||+..+....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999987653
No 443
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=85.62 E-value=0.6 Score=46.79 Aligned_cols=42 Identities=24% Similarity=0.265 Sum_probs=28.7
Q ss_pred EEEEEE-ccCCchHHHHHHHHHhccccCCCCCeEEEEeCCcccH
Q 039990 107 RVIPLV-GMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDFDI 149 (1217)
Q Consensus 107 ~vv~I~-G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~~~~ 149 (1217)
++|+|+ +-||+||||+|..++....+.. ..++-|+.....+.
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g-~~vlliD~D~~~~~ 44 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSG-YNIAVVDTDPQMSL 44 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTT-CCEEEEECCTTCHH
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCC-CeEEEEECCCCCCH
Confidence 678888 5699999999999877532222 24667776654443
No 444
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=85.61 E-value=0.39 Score=49.48 Aligned_cols=33 Identities=27% Similarity=0.364 Sum_probs=24.7
Q ss_pred EEEEEEccCCchHHHHHHHHHhccccCCCCCeEEE
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWV 141 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv 141 (1217)
.+++|+|..|.|||||.+.++.- .....+.+++
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~ 65 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGL--VRAQKGKIIF 65 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS--SCCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCC--CCCCCceEEE
Confidence 48999999999999999998763 2223345554
No 445
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=85.56 E-value=0.39 Score=50.10 Aligned_cols=33 Identities=21% Similarity=0.232 Sum_probs=24.8
Q ss_pred EEEEEEccCCchHHHHHHHHHhccccCCCCCeEEE
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWV 141 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv 141 (1217)
.+++|+|..|.|||||++.++.- .....+.+++
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl--~~p~~G~I~~ 83 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLL--EDFDEGEIII 83 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS--SCCSEEEEEE
T ss_pred CEEEEEcCCCCcHHHHHHHHHcC--CCCCCcEEEE
Confidence 59999999999999999998763 2223345554
No 446
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=85.54 E-value=0.49 Score=46.55 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=21.1
Q ss_pred cEEEEEEccCCchHHHHHHHHHhc
Q 039990 106 FRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 106 ~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
...|+|+|.+|+|||||...+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999998864
No 447
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=85.53 E-value=0.42 Score=49.60 Aligned_cols=22 Identities=36% Similarity=0.531 Sum_probs=20.5
Q ss_pred EEEEEEccCCchHHHHHHHHHh
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYN 128 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~ 128 (1217)
.+++|+|..|.|||||++.++.
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999886
No 448
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=85.38 E-value=0.57 Score=57.99 Aligned_cols=51 Identities=14% Similarity=0.286 Sum_probs=37.2
Q ss_pred CccccchhhHHHHHHHHhcCCC---CCCCCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 79 PAVYGRNEDKARILDMVLKNDP---SDAANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 79 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
..++|.++.++.+...+..... ........+.++|.+|+|||++|+.+++.
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~ 511 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA 511 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHH
Confidence 4588999888888777653211 11023357899999999999999998875
No 449
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=85.34 E-value=0.42 Score=45.85 Aligned_cols=25 Identities=24% Similarity=0.391 Sum_probs=21.2
Q ss_pred cEEEEEEccCCchHHHHHHHHHhcc
Q 039990 106 FRVIPLVGMGGIGKTTLAQEVYNDK 130 (1217)
Q Consensus 106 ~~vv~I~G~gGiGKTtLA~~v~~~~ 130 (1217)
.-.|+|+|.+|+|||||+..+....
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCC
Confidence 3467899999999999999988653
No 450
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=85.33 E-value=0.44 Score=48.09 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=19.3
Q ss_pred EEEEEccCCchHHHHHHHHHhcc
Q 039990 108 VIPLVGMGGIGKTTLAQEVYNDK 130 (1217)
Q Consensus 108 vv~I~G~gGiGKTtLA~~v~~~~ 130 (1217)
-|.|+|.+|||||+|+..+.+..
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~~ 37 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYDS 37 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCcCHHHHHHHHHhCC
Confidence 36689999999999999977653
No 451
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=85.30 E-value=0.41 Score=48.87 Aligned_cols=23 Identities=26% Similarity=0.549 Sum_probs=20.8
Q ss_pred EEEEEEccCCchHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.+++|+|..|.|||||.+.++.-
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999998764
No 452
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=85.29 E-value=0.42 Score=47.17 Aligned_cols=24 Identities=29% Similarity=0.636 Sum_probs=20.7
Q ss_pred EEEEEEccCCchHHHHHHHHHhcc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDK 130 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~ 130 (1217)
-.|+|+|.+|+|||||+..+....
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 367899999999999999988654
No 453
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=85.27 E-value=0.43 Score=50.69 Aligned_cols=23 Identities=17% Similarity=0.361 Sum_probs=21.0
Q ss_pred EEEEEEccCCchHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.+++|+|..|.|||||++.+..-
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhhh
Confidence 59999999999999999998764
No 454
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=85.27 E-value=0.41 Score=49.93 Aligned_cols=33 Identities=21% Similarity=0.298 Sum_probs=24.7
Q ss_pred EEEEEEccCCchHHHHHHHHHhccccCCCCCeEEE
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWV 141 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv 141 (1217)
.+++|+|..|.|||||.+.++.- .....+.+++
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl--~~p~~G~i~~ 66 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGF--LKADEGRVYF 66 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS--SCCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCC--CCCCCcEEEE
Confidence 48999999999999999998763 2223345554
No 455
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=85.26 E-value=0.43 Score=50.00 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=20.9
Q ss_pred EEEEEEccCCchHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.+++|+|..|.|||||++.++.-
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999998863
No 456
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=85.11 E-value=0.42 Score=49.63 Aligned_cols=33 Identities=24% Similarity=0.224 Sum_probs=24.8
Q ss_pred EEEEEEccCCchHHHHHHHHHhccccCCCCCeEEE
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWV 141 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv 141 (1217)
.+++|+|..|.|||||.+.++.- .....+.+++
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl--~~p~~G~I~~ 74 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTL--IKPSSGIVTV 74 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS--SCCSEEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHhcC--CCCCceEEEE
Confidence 49999999999999999998763 2223345554
No 457
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=85.07 E-value=0.48 Score=49.40 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=20.8
Q ss_pred EEEEEEccCCchHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.+++|+|+.|.|||||++.+...
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHHh
Confidence 69999999999999999988764
No 458
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=84.96 E-value=0.57 Score=46.08 Aligned_cols=24 Identities=21% Similarity=0.462 Sum_probs=20.6
Q ss_pred EEEEEEccCCchHHHHHHHHHhcc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDK 130 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~ 130 (1217)
--|+|+|.+|+|||||+..+....
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCcHHHHHHHHHhCC
Confidence 467899999999999999987654
No 459
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=84.94 E-value=0.59 Score=44.74 Aligned_cols=23 Identities=26% Similarity=0.563 Sum_probs=20.1
Q ss_pred EEEEEccCCchHHHHHHHHHhcc
Q 039990 108 VIPLVGMGGIGKTTLAQEVYNDK 130 (1217)
Q Consensus 108 vv~I~G~gGiGKTtLA~~v~~~~ 130 (1217)
-|+|+|.+|+|||||...+....
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 57899999999999999987653
No 460
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=84.91 E-value=0.46 Score=47.90 Aligned_cols=23 Identities=30% Similarity=0.343 Sum_probs=20.8
Q ss_pred EEEEEEccCCchHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
..++|.|++|+||||+|+.+.+.
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~ 31 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEK 31 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHH
Confidence 57899999999999999998875
No 461
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=84.90 E-value=0.43 Score=49.76 Aligned_cols=32 Identities=28% Similarity=0.388 Sum_probs=25.0
Q ss_pred EEEEEEccCCchHHHHHHHHHhccccCCCCCeEEE
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWV 141 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv 141 (1217)
.+++|+|..|.|||||++.++.- .. . .+.+++
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl-~~-~-~G~I~i 78 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRF-YD-A-EGDIKI 78 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS-SC-C-EEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcc-CC-C-CeEEEE
Confidence 58999999999999999998764 32 2 455555
No 462
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=84.86 E-value=0.59 Score=44.73 Aligned_cols=24 Identities=33% Similarity=0.668 Sum_probs=20.8
Q ss_pred EEEEEEccCCchHHHHHHHHHhcc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDK 130 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~ 130 (1217)
.-|+|+|.+|+|||||+..+....
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 467899999999999999987654
No 463
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=84.80 E-value=0.63 Score=45.58 Aligned_cols=25 Identities=32% Similarity=0.238 Sum_probs=21.2
Q ss_pred cEEEEEEccCCchHHHHHHHHHhcc
Q 039990 106 FRVIPLVGMGGIGKTTLAQEVYNDK 130 (1217)
Q Consensus 106 ~~vv~I~G~gGiGKTtLA~~v~~~~ 130 (1217)
.-.|+|+|.+|+|||||+..+....
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEEECCCCCCHHHHHHHHhcCC
Confidence 3567899999999999999987653
No 464
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=84.80 E-value=0.59 Score=44.91 Aligned_cols=25 Identities=32% Similarity=0.442 Sum_probs=21.2
Q ss_pred cEEEEEEccCCchHHHHHHHHHhcc
Q 039990 106 FRVIPLVGMGGIGKTTLAQEVYNDK 130 (1217)
Q Consensus 106 ~~vv~I~G~gGiGKTtLA~~v~~~~ 130 (1217)
.-.|+|+|.+|+|||||...+....
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 3568899999999999999988653
No 465
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=84.76 E-value=0.45 Score=49.18 Aligned_cols=32 Identities=25% Similarity=0.340 Sum_probs=24.7
Q ss_pred EEEEEEccCCchHHHHHHHHHhccccCCCCCeEEE
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWV 141 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv 141 (1217)
.+++|+|..|.|||||.+.++.- .+.. +.+++
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl-~~p~--G~i~~ 58 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGM-TSGK--GSIQF 58 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS-SCCE--EEEEE
T ss_pred CEEEEECCCCCcHHHHHHHHhCC-CCCC--eEEEE
Confidence 48999999999999999998764 3322 55554
No 466
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=84.69 E-value=0.47 Score=45.97 Aligned_cols=23 Identities=17% Similarity=0.287 Sum_probs=20.4
Q ss_pred EEEEEEccCCchHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
..|+|+|.+|+|||||...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999998764
No 467
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=84.68 E-value=0.35 Score=50.78 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=21.4
Q ss_pred cEEEEEEccCCchHHHHHHHHHhc
Q 039990 106 FRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 106 ~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
...|+|.|..|+||||+|+.+.+.
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 478999999999999999987765
No 468
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=84.45 E-value=0.77 Score=51.36 Aligned_cols=38 Identities=26% Similarity=0.226 Sum_probs=27.4
Q ss_pred CcEEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEe
Q 039990 105 NFRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCV 143 (1217)
Q Consensus 105 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~ 143 (1217)
..++++|+|.+|+||||++..++.. ....=..+..+..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~-l~~~g~~Vllvd~ 134 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALY-YKGKGRRPLLVAA 134 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH-HHTTTCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH-HHHcCCeEEEeec
Confidence 4579999999999999999998876 3332223445554
No 469
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=84.44 E-value=0.61 Score=45.09 Aligned_cols=24 Identities=33% Similarity=0.465 Sum_probs=20.7
Q ss_pred cEEEEEEccCCchHHHHHHHHHhc
Q 039990 106 FRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 106 ~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.-.|+|+|.+|+|||||+..+...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 356889999999999999998765
No 470
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=84.39 E-value=0.47 Score=49.21 Aligned_cols=23 Identities=26% Similarity=0.495 Sum_probs=20.7
Q ss_pred EEEEEEccCCchHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.+++|+|..|.|||||.+.++.-
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999998763
No 471
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=84.28 E-value=0.48 Score=49.67 Aligned_cols=33 Identities=24% Similarity=0.220 Sum_probs=24.8
Q ss_pred EEEEEEccCCchHHHHHHHHHhccccCCCCCeEEE
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWV 141 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv 141 (1217)
.+++|+|..|.|||||.+.++.- .....+.+++
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl--~~p~~G~I~~ 66 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGL--IEPTSGDVLY 66 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS--SCCSEEEEEE
T ss_pred CEEEEECCCCCcHHHHHHHHhCC--CCCCCcEEEE
Confidence 48999999999999999998763 2223445554
No 472
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=84.24 E-value=0.63 Score=44.05 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=20.5
Q ss_pred EEEEEEccCCchHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
+-|.|.|.+|+||||+|.++..+
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 57889999999999999998764
No 473
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=84.23 E-value=0.54 Score=54.62 Aligned_cols=24 Identities=29% Similarity=0.391 Sum_probs=21.7
Q ss_pred cEEEEEEccCCchHHHHHHHHHhc
Q 039990 106 FRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 106 ~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
..+|.++|++|.||||+|+++...
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~ 58 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRY 58 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998765
No 474
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=84.21 E-value=0.48 Score=49.93 Aligned_cols=23 Identities=35% Similarity=0.364 Sum_probs=20.7
Q ss_pred EEEEEEccCCchHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.+++|+|..|.|||||.+.++.-
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 48999999999999999998764
No 475
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=84.21 E-value=0.66 Score=44.33 Aligned_cols=24 Identities=25% Similarity=0.547 Sum_probs=20.4
Q ss_pred EEEEEEccCCchHHHHHHHHHhcc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDK 130 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~ 130 (1217)
-.|+|+|.+|+|||||...+....
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 357899999999999999987653
No 476
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=84.11 E-value=0.49 Score=46.33 Aligned_cols=23 Identities=22% Similarity=0.079 Sum_probs=19.6
Q ss_pred EEEEEEccCCchHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
+++.|+|..|+||||+|.+++.+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~ 26 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEI 26 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 47889999999999999766654
No 477
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=84.09 E-value=0.51 Score=46.31 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=20.3
Q ss_pred EEEEEEccCCchHHHHHHHHHhcc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDK 130 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~ 130 (1217)
-.|+|+|.+|+|||||+..+....
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~~ 44 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTGT 44 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999998877653
No 478
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=84.08 E-value=0.48 Score=48.50 Aligned_cols=25 Identities=24% Similarity=0.138 Sum_probs=21.6
Q ss_pred CcEEEEEEccCCchHHHHHHHHHhc
Q 039990 105 NFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 105 ~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.-.+|+|.|..|+||||+++.+...
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 3479999999999999999987753
No 479
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=84.06 E-value=0.58 Score=53.62 Aligned_cols=46 Identities=9% Similarity=-0.078 Sum_probs=30.6
Q ss_pred cccchhhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhcc
Q 039990 81 VYGRNEDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDK 130 (1217)
Q Consensus 81 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 130 (1217)
.+.|.+..+.+.+...... ....+|.+.|+.|.||||+|+++.+..
T Consensus 374 ~f~rpeV~~vLr~~~~~~~----~~~~~I~l~GlsGsGKSTIa~~La~~L 419 (511)
T 1g8f_A 374 WFSYPEVVKILRESNPPRP----KQGFSIVLGNSLTVSREQLSIALLSTF 419 (511)
T ss_dssp TTSCHHHHHHHHHHSCCGG----GCCEEEEECTTCCSCHHHHHHHHHHHH
T ss_pred cccChhhHHHHHHhccccc----ccceEEEecccCCCCHHHHHHHHHHHH
Confidence 4445444444444431111 234789999999999999999998863
No 480
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=84.03 E-value=0.56 Score=46.43 Aligned_cols=24 Identities=25% Similarity=0.499 Sum_probs=21.0
Q ss_pred cEEEEEEccCCchHHHHHHHHHhc
Q 039990 106 FRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 106 ~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
...|+|+|.+|+|||||...+...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457889999999999999998765
No 481
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=83.98 E-value=1.6 Score=49.78 Aligned_cols=52 Identities=10% Similarity=0.081 Sum_probs=35.6
Q ss_pred EEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCcccHHHHHHHHHHHh
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDFDILRISKAILESI 160 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l 160 (1217)
.++.|.|.+|+||||+|..++.......=..++|++.. .+..++...++...
T Consensus 201 ~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE--~~~~~l~~R~~~~~ 252 (444)
T 2q6t_A 201 SLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE--MPAAQLTLRMMCSE 252 (444)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS--SCHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC--CCHHHHHHHHHHHH
Confidence 58899999999999999998876322111357777764 34456666665443
No 482
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=83.97 E-value=0.67 Score=58.03 Aligned_cols=50 Identities=22% Similarity=0.353 Sum_probs=37.1
Q ss_pred ccccchhhHHHHHHHHhcCCC---CCCCCcEEEEEEccCCchHHHHHHHHHhc
Q 039990 80 AVYGRNEDKARILDMVLKNDP---SDAANFRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 80 ~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.++|.+..++.+...+..... ........|.|+|.+|+|||++|+.+++.
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~ 611 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT 611 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 579999988888777754211 11023458899999999999999998875
No 483
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=83.96 E-value=1.1 Score=48.14 Aligned_cols=43 Identities=16% Similarity=0.237 Sum_probs=29.8
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhcc
Q 039990 88 KARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDK 130 (1217)
Q Consensus 88 ~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 130 (1217)
++++.+.|.............|+|+|.+|+|||||..++....
T Consensus 8 ~~~l~~~l~~~~~~~~~~~~~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 8 VNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp HHHHHHHHTTSCCCTTCCCCEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred HHHHHHHHHhcCCCCCCCCCeEEEEeCCCCCHHHHHHHHHCCC
Confidence 4455555554332222345689999999999999999988653
No 484
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=83.95 E-value=0.45 Score=45.59 Aligned_cols=22 Identities=32% Similarity=0.449 Sum_probs=19.1
Q ss_pred EEEEEccCCchHHHHHHHHHhc
Q 039990 108 VIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 108 vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
-|+|+|.+|+|||||...+...
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 4789999999999999997654
No 485
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=83.90 E-value=0.99 Score=46.55 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.8
Q ss_pred EEEEEEccCCchHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
..|.++|++|.|||.+|.++++.
T Consensus 105 n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 105 NTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHhh
Confidence 47899999999999999999874
No 486
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=83.88 E-value=0.53 Score=45.30 Aligned_cols=23 Identities=26% Similarity=0.570 Sum_probs=20.0
Q ss_pred EEEEEEccCCchHHHHHHHHHhc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
-.|+|+|.+|+|||||+..+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999998764
No 487
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=83.84 E-value=0.69 Score=45.41 Aligned_cols=24 Identities=25% Similarity=0.547 Sum_probs=20.7
Q ss_pred EEEEEEccCCchHHHHHHHHHhcc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDK 130 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~ 130 (1217)
-.|+|+|.+|+|||||+..+....
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 457899999999999999988654
No 488
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=83.84 E-value=0.69 Score=45.19 Aligned_cols=25 Identities=28% Similarity=0.547 Sum_probs=21.4
Q ss_pred cEEEEEEccCCchHHHHHHHHHhcc
Q 039990 106 FRVIPLVGMGGIGKTTLAQEVYNDK 130 (1217)
Q Consensus 106 ~~vv~I~G~gGiGKTtLA~~v~~~~ 130 (1217)
.-.|+|+|.+|+|||||+..+....
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 4567899999999999999988653
No 489
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=83.67 E-value=0.55 Score=45.12 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=20.8
Q ss_pred EEEEEEccCCchHHHHHHHHHhcc
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDK 130 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~ 130 (1217)
-.|+|+|.+|+|||||...+....
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 457899999999999999987753
No 490
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=83.66 E-value=0.6 Score=47.28 Aligned_cols=26 Identities=27% Similarity=0.248 Sum_probs=21.9
Q ss_pred CcEEEEEEccCCchHHHHHHHHHhcc
Q 039990 105 NFRVIPLVGMGGIGKTTLAQEVYNDK 130 (1217)
Q Consensus 105 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 130 (1217)
....|.|+|.+|+|||||+..+....
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34578899999999999999988753
No 491
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=83.60 E-value=0.56 Score=45.05 Aligned_cols=23 Identities=17% Similarity=0.449 Sum_probs=20.0
Q ss_pred EEEEEccCCchHHHHHHHHHhcc
Q 039990 108 VIPLVGMGGIGKTTLAQEVYNDK 130 (1217)
Q Consensus 108 vv~I~G~gGiGKTtLA~~v~~~~ 130 (1217)
-|+|+|.+|+|||||..++....
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999987654
No 492
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=83.57 E-value=1.5 Score=52.78 Aligned_cols=62 Identities=18% Similarity=0.282 Sum_probs=40.1
Q ss_pred hhHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCcccHHHHHHHHH
Q 039990 86 EDKARILDMVLKNDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDFDILRISKAIL 157 (1217)
Q Consensus 86 ~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 157 (1217)
...+.+...|... .+..|+|++|.|||+.+.++....++. ...+.|+...+..+..+...+.
T Consensus 193 ~Q~~AV~~al~~~--------~~~lI~GPPGTGKT~ti~~~I~~l~~~--~~~ILv~a~TN~AvD~i~erL~ 254 (646)
T 4b3f_X 193 SQKEAVLFALSQK--------ELAIIHGPPGTGKTTTVVEIILQAVKQ--GLKVLCCAPSNIAVDNLVERLA 254 (646)
T ss_dssp HHHHHHHHHHHCS--------SEEEEECCTTSCHHHHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC--------CceEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEcCchHHHHHHHHHHH
Confidence 4445555556432 267899999999997666655443333 2468888877776666666553
No 493
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=83.48 E-value=0.49 Score=50.47 Aligned_cols=22 Identities=32% Similarity=0.662 Sum_probs=20.3
Q ss_pred EEEEEEccCCchHHHHHHHHHh
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYN 128 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~ 128 (1217)
.+++|+|..|.|||||++.+..
T Consensus 81 e~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTT
T ss_pred CEEEEECCCCchHHHHHHHHHc
Confidence 5999999999999999998775
No 494
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=83.48 E-value=2.6 Score=46.13 Aligned_cols=155 Identities=10% Similarity=-0.092 Sum_probs=87.1
Q ss_pred EEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCcccHHHHHHHHHHHh-hcCCC--CCCChhHHHHHHHHHHHh
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDFDILRISKAILESI-TRSSC--GLTDLNSVQLKLKEAVFK 183 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l-~~~~~--~~~~~~~~~~~l~~~l~~ 183 (1217)
++..++|..|.||++.|.++.+......|+....+.+....++.++...+...- ..... -.++.+.
T Consensus 19 ~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~plf~~~kvvii~~~~~----------- 87 (343)
T 1jr3_D 19 AAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPEN----------- 87 (343)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCTTCCHHHHHHHHHHHHHCCSCEEEEEECCSS-----------
T ss_pred cEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecCCCCHHHHHHHhcCcCCccCCeEEEEECCCC-----------
Confidence 588999999999999999987753333454322233344456666555432211 11000 0000000
Q ss_pred cCcCHHHHHHhhcccCCCCCCcEEEEEcCc-------hHHHHhh-CCCceEeccCCChHHHHHHHHHHHhCCCCCCCCCc
Q 039990 184 KNKSYELWQALKSPFMAGAPGSRIIVTTRS-------MDVALKM-GSGKNYELKHLSDDDCWSVFLNHAFEGIDTGTQGN 255 (1217)
Q Consensus 184 ~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~-------~~v~~~~-~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~ 255 (1217)
+ -..+.++.+...+....+++.+|++|-. ..+.... .....++..+++.++..+.+.+.+-..+ . .-
T Consensus 88 k-l~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~~~~~g-~---~i 162 (343)
T 1jr3_D 88 G-PNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLN-L---EL 162 (343)
T ss_dssp C-CCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHHHHHTT-C---EE
T ss_pred C-CChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHHHHHcC-C---CC
Confidence 0 1123444454444444457777766532 2333333 3346889999999998888877763221 1 11
Q ss_pred hhhHHHHHHHhccCCchhHHHH
Q 039990 256 FESTRQRVVAKCKGLPLAARAL 277 (1217)
Q Consensus 256 ~~~~~~~i~~~~~g~PLai~~~ 277 (1217)
..+.++.+++.++|...++...
T Consensus 163 ~~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 163 DDAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp CHHHHHHHHHSSTTCHHHHHHH
T ss_pred CHHHHHHHHHHhchHHHHHHHH
Confidence 2457888999999988777653
No 495
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=83.40 E-value=0.57 Score=44.71 Aligned_cols=21 Identities=33% Similarity=0.474 Sum_probs=19.0
Q ss_pred EEEEccCCchHHHHHHHHHhc
Q 039990 109 IPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 109 v~I~G~gGiGKTtLA~~v~~~ 129 (1217)
|+|+|.+|+|||||+..+...
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999998765
No 496
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=83.31 E-value=0.7 Score=44.35 Aligned_cols=22 Identities=41% Similarity=0.508 Sum_probs=19.2
Q ss_pred EEEEEEccCCchHHHHHHHHHh
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYN 128 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~ 128 (1217)
--|+|+|.+|+|||||+..+..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 3578999999999999999764
No 497
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=83.29 E-value=2 Score=48.18 Aligned_cols=53 Identities=25% Similarity=0.276 Sum_probs=38.5
Q ss_pred EEEEEEccCCchHHHHHHHHHhccccCCCCCeEEEEeCCcc-cHHHHHHHHHHH
Q 039990 107 RVIPLVGMGGIGKTTLAQEVYNDKLTDDFKPKAWVCVSDDF-DILRISKAILES 159 (1217)
Q Consensus 107 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~ 159 (1217)
..++|.|.+|+|||+|++++.+...+.+-+.++++-+++.. .+.++.+++.+.
T Consensus 154 Qr~~Ifgg~G~GKT~L~~~i~~~~~~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 154 GKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTTTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred CeeeeecCCCCChHHHHHHHHHhhHhhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 48899999999999999998876223334567777777765 456666666543
No 498
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=83.29 E-value=0.61 Score=45.28 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=20.5
Q ss_pred cEEEEEEccCCchHHHHHHHHHhc
Q 039990 106 FRVIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 106 ~~vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.--|+|+|.+|+|||||+..+...
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 346789999999999999998754
No 499
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=83.12 E-value=0.59 Score=49.03 Aligned_cols=22 Identities=36% Similarity=0.708 Sum_probs=20.0
Q ss_pred EEEEEccCCchHHHHHHHHHhc
Q 039990 108 VIPLVGMGGIGKTTLAQEVYND 129 (1217)
Q Consensus 108 vv~I~G~gGiGKTtLA~~v~~~ 129 (1217)
.++|+|..|+|||||.+.++..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999998864
No 500
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=83.08 E-value=0.6 Score=45.28 Aligned_cols=25 Identities=32% Similarity=0.590 Sum_probs=21.2
Q ss_pred cEEEEEEccCCchHHHHHHHHHhcc
Q 039990 106 FRVIPLVGMGGIGKTTLAQEVYNDK 130 (1217)
Q Consensus 106 ~~vv~I~G~gGiGKTtLA~~v~~~~ 130 (1217)
..-|+|+|.+|+|||||...+....
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCC
Confidence 3568899999999999999987653
Done!