BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039991
(172 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 14/122 (11%)
Query: 35 QLHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPANTPYVSKSVERANELGIEMDV 94
Q H+ F HGH+ P + + RG + + +TTP V + G E+ +
Sbjct: 4 QRHILFANVQGHGHVYPSLGLVSELARRGHRITYVTTPLFADEVKAA-------GAEVVL 56
Query: 95 KTVKFPSVEAGLPDGCENLDAITNEVNKELIVKFFGATTKLQEPLEQLLRDHKPDCLVAD 154
+F + +P+ + DA T +L + + + E+ L D+ PD +V D
Sbjct: 57 YKSEFDTFH--VPEVVKQEDAET-----QLHLVYVRENVAILRAAEEALGDNPPDLVVYD 109
Query: 155 IF 156
+F
Sbjct: 110 VF 111
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 35.4 bits (80), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 57/147 (38%), Gaps = 24/147 (16%)
Query: 37 HVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPANTPYVSKSVERANELGIEMDVKT 96
HV P+ GH+ P+ +AKL RG + + NT Y K + ++
Sbjct: 10 HVVMIPYPVQGHINPLFKLAKLLHLRGFHITFV----NTEYNHKRLLKSRGPKAFDGFTD 65
Query: 97 VKFPSVEAGLP------DGCENLDAITNEVNKELIVKFFGATTKLQEPLEQLLRDHKPD- 149
F S+ GL D +++ + V K + + T+L +H +
Sbjct: 66 FNFESIPDGLTPMEGDGDVSQDVPTLCQSVRKNFLKPYCELLTRL---------NHSTNV 116
Query: 150 ----CLVADIFFPWATDAAAKFGIPRL 172
CLV+D + AA +F +P +
Sbjct: 117 PPVTCLVSDCCMSFTIQAAEEFELPNV 143
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 32.0 bits (71), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 46/119 (38%), Gaps = 15/119 (12%)
Query: 37 HVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPANTPYVSKSVERANELGIEMDVKT 96
H+ FF HGH+ P + + + V RG + S A T + V+ A + D
Sbjct: 14 HISFFNIPGHGHVNPSLGIVQELVARGHRVSY----AITDEFAAQVKAAGATPVVYDSIL 69
Query: 97 VKFPSVEAGLPDGCENLDAITNEVNKELIVKFFGATTKLQEPLEQLLRDHKPDCLVADI 155
K + E P+ E+ + F ++ LE D +PD +V DI
Sbjct: 70 PKESNPEESWPEDQESAMGL-----------FLDEAVRVLPQLEDAYADDRPDLIVYDI 117
>pdb|4GB7|A Chain A, Putative 6-Aminohexanoate-Dimer Hydrolase From Bacillus
Anthracis
Length = 422
Score = 30.8 bits (68), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 13/77 (16%)
Query: 76 PYVSKSVERANELGIEMDVKTVKFPSVEAGLPDGCENLDAITNEVNKELIVKFFGATTKL 135
PY+ S E + DVK P A P +NLD + + FG+ T
Sbjct: 51 PYLRWSYTHXKEFTLINDVKNN--PDQIARFPSALQNLDDFA-------VQRRFGSAT-- 99
Query: 136 QEPLEQLLRDHKPDCLV 152
PL++LL D+K D V
Sbjct: 100 --PLKELLDDNKTDAFV 114
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases:
A Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases:
A Blueprint For Antibiotic Engineering
Length = 430
Score = 29.6 bits (65), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 22/44 (50%)
Query: 29 MGSEIPQLHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTP 72
M ++ H+ F AHGH+ P +++ + V RG + + P
Sbjct: 1 MTTQTTPAHIAMFSIAAHGHVNPSLEVIRELVARGHRVTYAIPP 44
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/136 (22%), Positives = 56/136 (41%), Gaps = 12/136 (8%)
Query: 37 HVFFFPFMAHGHMIPIVDMAKLFV-TRGVKASVITTPANTPYVSKSVERANELGIEMDVK 95
HV P GH+IP+V+ AK V G+ + + P +R + +
Sbjct: 8 HVAIIPSPGMGHLIPLVEFAKRLVHLHGLTVTFVIAGEGPP---SKAQRTVLDSLPSSIS 64
Query: 96 TVKFPSVEAGLPDGCENLDAITNEVNKELIVKFFGATTKLQEPLEQLLRDHK-PDCLVAD 154
+V P V+ +L + T + + + + +L++ + + + P LV D
Sbjct: 65 SVFLPPVD------LTDLSSSTR-IESRISLTVTRSNPELRKVFDSFVEGGRLPTALVVD 117
Query: 155 IFFPWATDAAAKFGIP 170
+F A D A +F +P
Sbjct: 118 LFGTDAFDVAVEFHVP 133
>pdb|4GVW|A Chain A, Three-Dimensional Structure Of The De Novo Designed Serine
Hydrolase 2bfq_3, Northeast Structural Genomics
Consortium (Nesg) Target Or248
Length = 199
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 7/53 (13%)
Query: 82 VERANELGIEMDVKTVKFPSVEAGLPDGCENLDAITNEVNKELIVKFFGATTK 134
+E+A E+G+E ++ FP+V AG+ GC+ + E + E + F G+ K
Sbjct: 124 LEKAEEMGVE----SIAFPAVSAGIY-GCDAEKVV--ETSLEAVKNFKGSAVK 169
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 26.9 bits (58), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 150 CLVADIFFPWATDAAAKFGIPRL 172
CLVAD F +A D AA+ G+ L
Sbjct: 115 CLVADAFIWFAADMAAEMGVAWL 137
>pdb|2CFM|A Chain A, Atp-Dependent Dna Ligase From Pyrococcus Furiosus
Length = 561
Score = 26.6 bits (57), Expect = 7.2, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 32 EIPQLHVFFFPFMAHGHMIPIVDMAKLFVTRG--VKASVITTPANTPYVSKSVERANELG 89
++P H+ F P++ G + P D +L V +KA T + + +SV+ +LG
Sbjct: 32 KVPDDHLEFIPYLILGEVFPEWDERELGVGEKLLIKAVAXATGIDAKEIEESVKDTGDLG 91
>pdb|1R5B|A Chain A, Crystal Structure Analysis Of Sup35
pdb|1R5N|A Chain A, Crystal Structure Analysis Of Sup35 Complexed With Gdp
pdb|1R5O|A Chain A, Crystal Structure Analysis Of Sup35 Complexed With Gmppnp
Length = 467
Score = 26.6 bits (57), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 9/97 (9%)
Query: 59 FVTRGVKASVITTPANTPYVSKSVERANELGIEMDVKTVKFPSVEAGLPDGCENLD---- 114
F T + S++ P + YV+ + A++ I + V + + EAG G + +
Sbjct: 116 FETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVL 175
Query: 115 AITNEVNKELIVKFFGATTKLQEPLEQLLRDHKPDCL 151
A T +N ++V K+ EP Q + +C+
Sbjct: 176 ARTQGINHLVVV-----INKMDEPSVQWSEERYKECV 207
>pdb|3R7K|A Chain A, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
pdb|3R7K|B Chain B, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
pdb|3R7K|C Chain C, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
pdb|3R7K|D Chain D, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
Length = 403
Score = 26.6 bits (57), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 52 IVDMAKLFVTRGVKASVITTPANT 75
+V+ AK F+T GV+A +TT T
Sbjct: 174 VVNGAKTFITSGVRADFVTTAVRT 197
>pdb|2DX6|A Chain A, Crystal Structure Of Conserved Hypothetical Protein,
Ttha0132 From Thermus Thermophilus Hb8
pdb|2DX6|B Chain B, Crystal Structure Of Conserved Hypothetical Protein,
Ttha0132 From Thermus Thermophilus Hb8
Length = 159
Score = 26.6 bits (57), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 72 PANTPYVSKSVERANELGIEMDVKTVKFPSVEAGL 106
PA+ V K+ + A E +E+ +KTV FP + G+
Sbjct: 83 PASLETVRKATKSALEKAVELGLKTVAFPLLGTGV 117
>pdb|2X5P|A Chain A, Crystal Structure Of The Streptococcus Pyogenes
Fibronectin Binding Protein Fbab-B
Length = 121
Score = 26.2 bits (56), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 19/37 (51%)
Query: 98 KFPSVEAGLPDGCENLDAITNEVNKELIVKFFGATTK 134
K+ VE PDG E AIT VN++ V G TK
Sbjct: 75 KYTFVETAAPDGYEVATAITFTVNEQGQVTVNGKATK 111
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,755,701
Number of Sequences: 62578
Number of extensions: 182066
Number of successful extensions: 475
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 461
Number of HSP's gapped (non-prelim): 25
length of query: 172
length of database: 14,973,337
effective HSP length: 92
effective length of query: 80
effective length of database: 9,216,161
effective search space: 737292880
effective search space used: 737292880
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)