Query 039991
Match_columns 172
No_of_seqs 149 out of 1092
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 04:02:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039991.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039991hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02534 UDP-glycosyltransfera 99.9 3.3E-22 7.2E-27 170.9 16.1 135 35-172 8-144 (491)
2 PLN02863 UDP-glucoronosyl/UDP- 99.9 3.2E-22 6.9E-27 170.8 15.0 131 33-172 7-139 (477)
3 PLN02670 transferase, transfer 99.9 8.5E-22 1.8E-26 167.7 14.7 130 35-172 6-135 (472)
4 PLN03007 UDP-glucosyltransfera 99.9 4.6E-21 9.9E-26 164.1 16.4 139 34-172 4-147 (482)
5 PLN00414 glycosyltransferase f 99.9 4.2E-21 9.1E-26 162.7 14.4 128 35-172 4-131 (446)
6 PLN02208 glycosyltransferase f 99.9 9.4E-21 2E-25 160.5 14.1 128 35-172 4-131 (442)
7 PLN02173 UDP-glucosyl transfer 99.9 7.7E-21 1.7E-25 161.1 13.3 119 34-172 4-129 (449)
8 PLN02764 glycosyltransferase f 99.9 2.2E-20 4.8E-25 158.2 15.2 132 29-172 1-132 (453)
9 PLN02410 UDP-glucoronosyl/UDP- 99.8 2.3E-20 5E-25 158.5 12.9 123 29-172 1-130 (451)
10 PLN02210 UDP-glucosyl transfer 99.8 1.2E-19 2.5E-24 154.4 13.0 119 34-172 7-128 (456)
11 PLN02555 limonoid glucosyltran 99.8 2E-19 4.3E-24 153.6 13.7 130 29-172 1-141 (480)
12 PLN02992 coniferyl-alcohol glu 99.8 2E-19 4.4E-24 153.5 13.5 123 34-172 4-129 (481)
13 PLN02562 UDP-glycosyltransfera 99.8 2.6E-19 5.7E-24 152.0 13.9 118 35-172 6-128 (448)
14 PLN02448 UDP-glycosyltransfera 99.8 3.5E-19 7.5E-24 151.8 13.6 121 33-172 8-133 (459)
15 PLN00164 glucosyltransferase; 99.8 9.2E-19 2E-23 149.8 13.7 123 35-172 3-135 (480)
16 PLN02152 indole-3-acetate beta 99.8 1E-18 2.2E-23 148.5 12.8 123 35-172 3-131 (455)
17 PLN03015 UDP-glucosyl transfer 99.8 3.3E-18 7.2E-23 145.5 13.5 123 35-171 3-131 (470)
18 PLN03004 UDP-glycosyltransfera 99.8 5.8E-18 1.2E-22 143.7 13.3 127 35-172 3-137 (451)
19 PLN02167 UDP-glycosyltransfera 99.8 1.4E-17 3E-22 142.5 14.0 131 35-172 3-143 (475)
20 PLN02207 UDP-glycosyltransfera 99.8 1.3E-17 2.9E-22 142.0 13.5 129 35-172 3-140 (468)
21 PLN02554 UDP-glycosyltransfera 99.8 1.8E-17 3.8E-22 142.0 13.7 124 35-172 2-137 (481)
22 cd03784 GT1_Gtf_like This fami 99.6 9E-16 1.9E-20 127.9 9.7 128 36-172 1-129 (401)
23 TIGR01426 MGT glycosyltransfer 99.6 1.3E-14 2.9E-19 120.9 10.6 117 41-172 1-117 (392)
24 PF03033 Glyco_transf_28: Glyc 99.4 9.2E-13 2E-17 94.5 4.8 114 38-172 1-125 (139)
25 PHA03392 egt ecdysteroid UDP-g 99.0 9.8E-10 2.1E-14 95.0 8.9 128 36-172 21-162 (507)
26 PF00201 UDPGT: UDP-glucoronos 98.9 1.1E-10 2.4E-15 100.2 -2.1 128 37-172 2-144 (500)
27 KOG1192 UDP-glucuronosyl and U 98.9 2E-09 4.4E-14 92.1 5.6 41 35-75 5-45 (496)
28 COG1819 Glycosyl transferases, 98.8 1.3E-08 2.8E-13 85.9 6.9 120 35-172 1-120 (406)
29 PF13528 Glyco_trans_1_3: Glyc 98.7 3.1E-07 6.7E-12 74.2 11.1 117 36-172 1-118 (318)
30 TIGR00661 MJ1255 conserved hyp 98.4 2.7E-06 5.8E-11 69.4 9.3 111 38-172 2-117 (321)
31 PRK12446 undecaprenyldiphospho 98.3 1.7E-05 3.7E-10 65.7 12.4 115 36-172 2-118 (352)
32 COG0707 MurG UDP-N-acetylgluco 98.0 0.0002 4.3E-09 59.6 12.5 114 37-172 2-118 (357)
33 cd03785 GT1_MurG MurG is an N- 97.8 0.00066 1.4E-08 55.2 12.3 114 37-172 1-116 (350)
34 PRK00726 murG undecaprenyldiph 97.7 0.0011 2.4E-08 54.3 12.7 115 36-172 2-118 (357)
35 TIGR01133 murG undecaprenyldip 97.6 0.0014 3E-08 53.3 12.4 114 37-172 2-117 (348)
36 TIGR00215 lpxB lipid-A-disacch 97.3 0.003 6.6E-08 52.9 10.7 109 36-172 6-117 (385)
37 cd03816 GT1_ALG1_like This fam 96.9 0.044 9.5E-07 46.3 13.7 40 34-73 2-41 (415)
38 PRK00025 lpxB lipid-A-disaccha 96.7 0.0093 2E-07 49.3 8.0 36 36-72 2-37 (380)
39 cd03818 GT1_ExpC_like This fam 96.6 0.061 1.3E-06 44.8 12.6 99 51-171 12-112 (396)
40 PF13579 Glyco_trans_4_4: Glyc 96.1 0.012 2.7E-07 41.5 4.7 91 51-172 6-100 (160)
41 TIGR03590 PseG pseudaminic aci 96.0 0.11 2.4E-06 41.7 10.4 32 44-75 12-43 (279)
42 PF13477 Glyco_trans_4_2: Glyc 95.8 0.11 2.4E-06 36.4 8.7 98 38-172 2-103 (139)
43 cd03823 GT1_ExpE7_like This fa 95.7 0.18 4E-06 40.0 10.6 29 46-74 15-43 (359)
44 cd03800 GT1_Sucrose_synthase T 95.6 0.069 1.5E-06 43.7 8.0 29 46-74 21-49 (398)
45 COG4671 Predicted glycosyl tra 95.6 0.078 1.7E-06 44.0 7.8 57 34-98 8-68 (400)
46 cd03794 GT1_wbuB_like This fam 95.5 0.2 4.4E-06 39.9 10.2 29 46-74 14-42 (394)
47 PRK10307 putative glycosyl tra 95.3 0.26 5.6E-06 41.2 10.6 22 52-73 21-42 (412)
48 COG1703 ArgK Putative periplas 95.0 0.099 2.1E-06 42.5 6.7 44 34-77 50-93 (323)
49 cd03805 GT1_ALG2_like This fam 94.7 0.91 2E-05 37.2 12.0 37 37-73 2-40 (392)
50 PF04007 DUF354: Protein of un 94.1 1 2.2E-05 37.3 10.9 97 47-172 11-107 (335)
51 cd03796 GT1_PIG-A_like This fa 93.9 0.84 1.8E-05 38.0 10.4 27 47-73 15-41 (398)
52 PF12000 Glyco_trans_4_3: Gkyc 92.9 2 4.3E-05 32.2 9.8 38 134-171 52-91 (171)
53 PRK13609 diacylglycerol glucos 92.6 0.2 4.2E-06 41.5 4.5 38 35-72 4-42 (380)
54 PLN02275 transferase, transfer 92.5 5.3 0.00011 33.0 13.7 38 35-74 6-44 (371)
55 TIGR02472 sucr_P_syn_N sucrose 92.3 1.2 2.7E-05 37.7 9.1 29 44-72 23-54 (439)
56 PLN00142 sucrose synthase 91.7 1.3 2.7E-05 41.0 8.9 26 147-172 408-435 (815)
57 cd04962 GT1_like_5 This family 91.5 0.25 5.4E-06 40.1 3.9 37 37-73 2-39 (371)
58 TIGR02470 sucr_synth sucrose s 91.4 6 0.00013 36.6 12.8 113 46-171 279-411 (784)
59 cd03819 GT1_WavL_like This fam 91.4 3.9 8.4E-05 32.7 10.7 27 47-73 11-37 (355)
60 cd02067 B12-binding B12 bindin 91.3 0.92 2E-05 31.3 6.1 45 37-81 1-45 (119)
61 cd03808 GT1_cap1E_like This fa 89.9 0.53 1.1E-05 37.0 4.4 38 37-74 1-38 (359)
62 cd03814 GT1_like_2 This family 89.9 0.61 1.3E-05 37.1 4.7 29 46-74 14-42 (364)
63 PRK02261 methylaspartate mutas 89.7 2.1 4.5E-05 30.7 6.9 47 35-81 3-49 (137)
64 TIGR02468 sucrsPsyn_pln sucros 88.9 6.2 0.00013 37.6 11.0 27 47-73 196-224 (1050)
65 cd03817 GT1_UGDG_like This fam 88.9 0.88 1.9E-05 36.1 4.9 33 42-74 10-42 (374)
66 PF13439 Glyco_transf_4: Glyco 88.6 0.59 1.3E-05 33.3 3.5 28 47-74 13-40 (177)
67 cd02070 corrinoid_protein_B12- 88.0 3.4 7.3E-05 31.5 7.4 47 35-81 82-128 (201)
68 PLN02871 UDP-sulfoquinovose:DA 87.8 1.3 2.8E-05 37.9 5.6 40 34-73 57-101 (465)
69 COG3980 spsG Spore coat polysa 86.7 1.4 3E-05 35.8 4.7 40 37-76 2-45 (318)
70 cd04951 GT1_WbdM_like This fam 85.7 1.1 2.3E-05 35.9 3.8 28 46-73 12-39 (360)
71 cd03802 GT1_AviGT4_like This f 85.5 2.1 4.5E-05 34.0 5.4 27 47-73 20-46 (335)
72 cd03825 GT1_wcfI_like This fam 84.8 1.7 3.7E-05 34.8 4.6 38 37-74 2-41 (365)
73 PRK01021 lpxB lipid-A-disaccha 84.4 14 0.0003 33.2 10.2 130 39-172 196-340 (608)
74 PRK05749 3-deoxy-D-manno-octul 84.0 12 0.00025 31.5 9.4 29 37-65 51-79 (425)
75 TIGR02370 pyl_corrinoid methyl 83.9 5.6 0.00012 30.2 6.8 48 35-82 84-131 (197)
76 COG1484 DnaC DNA replication p 83.6 1.8 3.9E-05 34.4 4.1 46 35-80 105-150 (254)
77 cd03821 GT1_Bme6_like This fam 83.2 2.4 5.1E-05 33.6 4.7 30 45-74 13-42 (375)
78 PLN02846 digalactosyldiacylgly 83.2 2.1 4.5E-05 37.1 4.6 39 35-73 4-47 (462)
79 cd03786 GT1_UDP-GlcNAc_2-Epime 82.1 7.3 0.00016 31.6 7.3 31 44-74 7-38 (363)
80 PF02951 GSH-S_N: Prokaryotic 81.0 3.3 7.2E-05 29.1 4.2 38 37-74 2-42 (119)
81 COG2910 Putative NADH-flavin r 80.9 2.3 5.1E-05 32.5 3.6 33 36-73 1-34 (211)
82 cd02071 MM_CoA_mut_B12_BD meth 80.7 8.4 0.00018 26.7 6.3 43 37-79 1-43 (122)
83 PRK00654 glgA glycogen synthas 80.5 3.2 6.8E-05 35.6 4.8 27 47-73 18-44 (466)
84 TIGR02655 circ_KaiC circadian 80.4 21 0.00046 31.0 9.9 49 35-83 263-311 (484)
85 cd02069 methionine_synthase_B1 80.4 9 0.00019 29.6 6.8 49 34-82 87-135 (213)
86 cd01635 Glycosyltransferase_GT 80.3 3.2 6.9E-05 30.5 4.3 26 45-70 12-37 (229)
87 cd03811 GT1_WabH_like This fam 79.6 3.9 8.4E-05 31.9 4.8 30 45-74 11-40 (353)
88 TIGR03087 stp1 sugar transfera 79.5 1.4 3E-05 36.7 2.2 33 41-74 8-41 (397)
89 cd04955 GT1_like_6 This family 79.1 3.9 8.4E-05 32.8 4.7 28 47-74 16-43 (363)
90 cd03795 GT1_like_4 This family 77.8 4.9 0.00011 32.0 4.9 30 45-74 13-42 (357)
91 PF02441 Flavoprotein: Flavopr 77.7 4 8.7E-05 28.6 3.9 41 37-78 2-42 (129)
92 cd03801 GT1_YqgM_like This fam 77.4 5.4 0.00012 31.1 5.0 29 46-74 14-42 (374)
93 TIGR03877 thermo_KaiC_1 KaiC d 77.1 32 0.00069 26.6 9.2 46 35-80 21-66 (237)
94 COG1519 KdtA 3-deoxy-D-manno-o 76.3 34 0.00074 29.3 9.5 96 37-172 50-150 (419)
95 COG0541 Ffh Signal recognition 75.9 52 0.0011 28.5 10.8 44 34-77 99-142 (451)
96 cd03806 GT1_ALG11_like This fa 75.7 27 0.00059 29.5 9.0 26 50-75 18-45 (419)
97 cd03820 GT1_amsD_like This fam 75.2 7.1 0.00015 30.3 5.1 29 46-74 13-41 (348)
98 PF04244 DPRP: Deoxyribodipyri 75.0 4.8 0.0001 31.4 3.9 27 47-73 46-72 (224)
99 cd00561 CobA_CobO_BtuR ATP:cor 74.2 32 0.0007 25.3 11.2 34 36-69 3-36 (159)
100 TIGR02095 glgA glycogen/starch 72.5 7.7 0.00017 33.2 5.0 24 50-73 21-44 (473)
101 PF02310 B12-binding: B12 bind 71.8 28 0.0006 23.5 7.8 45 37-81 2-46 (121)
102 TIGR03449 mycothiol_MshA UDP-N 71.7 4.1 9E-05 33.7 3.1 28 46-73 20-47 (405)
103 PRK04328 hypothetical protein; 71.6 47 0.001 26.0 9.5 46 35-80 23-68 (249)
104 PF04127 DFP: DNA / pantothena 71.5 5 0.00011 30.3 3.2 32 41-74 23-54 (185)
105 cd03791 GT1_Glycogen_synthase_ 71.3 4.4 9.5E-05 34.5 3.2 24 50-73 20-43 (476)
106 PF07355 GRDB: Glycine/sarcosi 69.8 8.5 0.00018 32.1 4.4 40 133-172 66-115 (349)
107 COG2185 Sbm Methylmalonyl-CoA 69.3 15 0.00033 26.6 5.2 45 34-78 11-55 (143)
108 PF08323 Glyco_transf_5: Starc 69.3 4.3 9.3E-05 31.8 2.6 24 50-73 20-43 (245)
109 cd03799 GT1_amsK_like This is 67.3 14 0.00031 29.3 5.3 26 48-73 13-38 (355)
110 PF09314 DUF1972: Domain of un 67.3 11 0.00023 28.7 4.2 33 43-75 12-46 (185)
111 TIGR00236 wecB UDP-N-acetylglu 67.0 11 0.00025 30.8 4.7 109 37-172 2-114 (365)
112 COG1817 Uncharacterized protei 66.9 73 0.0016 26.4 10.1 98 47-172 11-108 (346)
113 PRK08305 spoVFB dipicolinate s 65.8 8.9 0.00019 29.3 3.6 39 36-75 6-45 (196)
114 PLN02316 synthase/transferase 65.3 18 0.00039 34.6 6.0 40 35-74 587-632 (1036)
115 cd03807 GT1_WbnK_like This fam 65.1 25 0.00054 27.5 6.2 30 45-74 11-40 (365)
116 COG0162 TyrS Tyrosyl-tRNA synt 64.7 8.3 0.00018 32.8 3.5 38 35-73 34-74 (401)
117 PRK06249 2-dehydropantoate 2-r 64.0 9.8 0.00021 30.8 3.7 34 35-73 5-38 (313)
118 TIGR01917 gly_red_sel_B glycin 62.9 14 0.0003 31.7 4.4 40 133-172 62-111 (431)
119 TIGR01918 various_sel_PB selen 62.8 14 0.0003 31.7 4.5 40 133-172 62-111 (431)
120 cd03798 GT1_wlbH_like This fam 62.8 15 0.00033 28.7 4.6 30 45-74 13-42 (377)
121 PF12146 Hydrolase_4: Putative 62.2 20 0.00043 22.9 4.2 36 36-71 16-51 (79)
122 PF03308 ArgK: ArgK protein; 62.1 16 0.00036 29.3 4.5 43 34-76 28-70 (266)
123 PRK10422 lipopolysaccharide co 62.0 14 0.00031 30.3 4.4 43 34-76 4-48 (352)
124 cd03812 GT1_CapH_like This fam 62.0 11 0.00023 30.2 3.6 31 45-75 11-41 (358)
125 COG0467 RAD55 RecA-superfamily 61.9 40 0.00087 26.4 6.8 48 34-81 22-69 (260)
126 PRK03359 putative electron tra 60.9 17 0.00037 28.9 4.5 27 146-172 111-143 (256)
127 COG4088 Predicted nucleotide k 60.8 13 0.00029 29.1 3.7 36 36-71 2-37 (261)
128 PRK07313 phosphopantothenoylcy 60.1 15 0.00033 27.5 3.9 42 36-78 2-43 (182)
129 PF00448 SRP54: SRP54-type pro 59.8 36 0.00077 25.8 5.9 39 37-75 3-41 (196)
130 PF01975 SurE: Survival protei 59.6 10 0.00022 29.0 2.9 26 51-76 15-40 (196)
131 PF01210 NAD_Gly3P_dh_N: NAD-d 58.2 9.9 0.00021 27.5 2.6 21 53-73 12-32 (157)
132 TIGR00064 ftsY signal recognit 58.1 35 0.00075 27.3 5.9 40 35-74 72-111 (272)
133 TIGR02852 spore_dpaB dipicolin 57.5 17 0.00038 27.5 3.8 38 37-74 2-39 (187)
134 PF00070 Pyr_redox: Pyridine n 57.4 20 0.00043 22.5 3.6 24 51-74 10-33 (80)
135 PRK12342 hypothetical protein; 57.2 23 0.0005 28.2 4.7 27 146-172 108-140 (254)
136 PRK05973 replicative DNA helic 56.5 56 0.0012 25.7 6.7 46 35-80 64-109 (237)
137 cd03822 GT1_ecORF704_like This 56.3 22 0.00048 28.1 4.5 28 46-73 13-40 (366)
138 cd02065 B12-binding_like B12 b 55.8 48 0.001 22.3 5.7 42 38-79 2-43 (125)
139 KOG2941 Beta-1,4-mannosyltrans 55.5 88 0.0019 26.5 7.8 60 34-99 11-70 (444)
140 PF02571 CbiJ: Precorrin-6x re 54.7 1.1E+02 0.0023 24.3 8.3 102 50-172 116-223 (249)
141 PRK09620 hypothetical protein; 54.7 14 0.00031 28.8 3.1 30 41-72 23-52 (229)
142 PRK10916 ADP-heptose:LPS hepto 54.6 24 0.00052 28.9 4.6 41 36-76 1-43 (348)
143 PRK06719 precorrin-2 dehydroge 54.5 33 0.00072 25.0 4.8 33 35-72 13-45 (157)
144 PRK07773 replicative DNA helic 54.4 1.6E+02 0.0034 27.9 10.2 43 37-79 219-262 (886)
145 PF02374 ArsA_ATPase: Anion-tr 53.9 28 0.0006 28.4 4.7 39 37-75 2-41 (305)
146 cd02034 CooC The accessory pro 53.8 43 0.00093 23.0 5.1 37 37-73 1-37 (116)
147 cd03115 SRP The signal recogni 53.5 57 0.0012 23.5 6.1 38 38-75 3-40 (173)
148 TIGR01425 SRP54_euk signal rec 53.4 35 0.00077 29.3 5.4 41 35-75 100-140 (429)
149 PRK00771 signal recognition pa 53.4 41 0.00089 29.0 5.9 42 35-76 95-136 (437)
150 PLN02211 methyl indole-3-aceta 53.2 38 0.00081 26.7 5.3 47 26-73 9-55 (273)
151 TIGR01007 eps_fam capsular exo 52.6 45 0.00098 24.9 5.5 51 23-74 6-57 (204)
152 cd01124 KaiC KaiC is a circadi 52.2 63 0.0014 23.4 6.1 43 38-80 2-44 (187)
153 COG2099 CobK Precorrin-6x redu 52.1 85 0.0018 25.1 7.0 33 140-172 189-226 (257)
154 PF13450 NAD_binding_8: NAD(P) 52.0 21 0.00046 22.0 3.0 22 53-74 9-30 (68)
155 TIGR03568 NeuC_NnaA UDP-N-acet 51.9 32 0.0007 28.6 5.0 112 37-172 2-121 (365)
156 TIGR00234 tyrS tyrosyl-tRNA sy 51.9 16 0.00034 30.8 3.1 37 36-73 33-72 (377)
157 PLN02939 transferase, transfer 51.8 37 0.0008 32.3 5.6 41 33-73 479-525 (977)
158 PRK06732 phosphopantothenate-- 51.5 19 0.00041 28.0 3.3 33 38-72 17-49 (229)
159 TIGR03264 met_CoM_red_C methyl 51.4 21 0.00045 27.0 3.3 36 37-72 35-71 (194)
160 TIGR03029 EpsG chain length de 51.3 45 0.00098 26.2 5.5 51 23-73 90-142 (274)
161 PRK08939 primosomal protein Dn 51.2 22 0.00047 29.1 3.7 44 36-79 157-200 (306)
162 cd01983 Fer4_NifH The Fer4_Nif 50.8 52 0.0011 20.4 4.9 33 38-70 2-34 (99)
163 PRK06835 DNA replication prote 50.5 24 0.00052 29.2 3.9 43 36-78 184-226 (329)
164 TIGR02113 coaC_strep phosphopa 50.4 25 0.00055 26.3 3.7 33 44-76 8-40 (177)
165 PF08660 Alg14: Oligosaccharid 50.4 1E+02 0.0022 22.8 10.2 31 44-74 6-38 (170)
166 PRK14974 cell division protein 50.0 51 0.0011 27.3 5.8 40 35-74 140-179 (336)
167 PF03205 MobB: Molybdopterin g 49.5 44 0.00096 23.8 4.7 35 36-70 1-35 (140)
168 COG2099 CobK Precorrin-6x redu 49.5 26 0.00056 28.0 3.7 34 138-172 57-97 (257)
169 COG2874 FlaH Predicted ATPases 49.4 65 0.0014 25.3 5.8 41 37-77 30-70 (235)
170 COG1435 Tdk Thymidine kinase [ 49.3 1.2E+02 0.0026 23.3 7.2 39 36-74 4-43 (201)
171 cd01981 Pchlide_reductase_B Pc 49.2 20 0.00044 30.4 3.4 31 139-172 362-392 (430)
172 PRK06029 3-octaprenyl-4-hydrox 49.1 29 0.00062 26.3 3.8 43 36-79 2-45 (185)
173 cd03466 Nitrogenase_NifN_2 Nit 48.8 24 0.00051 30.1 3.7 32 138-172 363-394 (429)
174 PRK14478 nitrogenase molybdenu 48.7 20 0.00044 31.1 3.3 30 140-172 386-415 (475)
175 PF03720 UDPG_MGDP_dh_C: UDP-g 48.6 26 0.00056 23.6 3.3 28 50-77 17-44 (106)
176 PRK05920 aromatic acid decarbo 48.5 26 0.00057 26.9 3.6 42 36-78 4-45 (204)
177 cd01715 ETF_alpha The electron 48.3 51 0.0011 24.0 5.1 37 136-172 72-111 (168)
178 COG0381 WecB UDP-N-acetylgluco 47.8 39 0.00084 28.6 4.7 110 36-171 4-119 (383)
179 CHL00076 chlB photochlorophyll 47.5 23 0.00049 31.2 3.5 30 139-171 366-395 (513)
180 TIGR00421 ubiX_pad polyprenyl 47.4 27 0.00059 26.2 3.5 33 45-78 9-41 (181)
181 TIGR02193 heptsyl_trn_I lipopo 47.3 31 0.00066 27.7 4.0 42 37-78 1-44 (319)
182 PF01555 N6_N4_Mtase: DNA meth 47.2 15 0.00033 27.4 2.2 34 137-170 179-215 (231)
183 PRK06222 ferredoxin-NADP(+) re 47.0 57 0.0012 26.0 5.5 39 36-76 99-137 (281)
184 PF13167 GTP-bdg_N: GTP-bindin 47.0 45 0.00098 22.4 4.1 35 138-172 48-84 (95)
185 TIGR00176 mobB molybdopterin-g 46.9 51 0.0011 23.9 4.8 35 38-72 2-36 (155)
186 TIGR00288 conserved hypothetic 46.7 62 0.0014 23.9 5.2 33 36-73 107-139 (160)
187 cd01452 VWA_26S_proteasome_sub 46.1 1E+02 0.0022 23.3 6.4 60 38-98 111-173 (187)
188 cd00861 ProRS_anticodon_short 46.1 54 0.0012 20.9 4.5 36 36-71 2-39 (94)
189 TIGR01285 nifN nitrogenase mol 46.1 28 0.0006 29.9 3.7 32 138-172 364-395 (432)
190 PRK13982 bifunctional SbtC-lik 45.9 22 0.00048 31.0 3.1 38 36-73 257-306 (475)
191 PLN02206 UDP-glucuronate decar 45.6 45 0.00098 28.6 5.0 43 24-70 108-150 (442)
192 TIGR01278 DPOR_BchB light-inde 45.6 26 0.00056 30.7 3.5 32 138-172 355-386 (511)
193 cd01985 ETF The electron trans 45.4 56 0.0012 24.0 4.9 35 138-172 82-119 (181)
194 PF04413 Glycos_transf_N: 3-De 45.4 89 0.0019 23.4 6.0 40 37-76 22-63 (186)
195 cd01965 Nitrogenase_MoFe_beta_ 45.3 27 0.00058 29.7 3.5 31 139-172 363-393 (428)
196 PRK05986 cob(I)alamin adenolsy 45.3 70 0.0015 24.4 5.4 38 35-72 22-59 (191)
197 PF07015 VirC1: VirC1 protein; 45.1 87 0.0019 24.7 6.0 40 38-77 4-44 (231)
198 cd01976 Nitrogenase_MoFe_alpha 45.1 26 0.00056 29.9 3.4 31 138-171 360-390 (421)
199 PRK08057 cobalt-precorrin-6x r 45.1 35 0.00077 27.0 3.9 35 35-74 2-36 (248)
200 PRK10867 signal recognition pa 44.5 79 0.0017 27.2 6.2 42 35-76 100-142 (433)
201 COG1618 Predicted nucleotide k 44.5 49 0.0011 24.9 4.3 39 35-73 5-43 (179)
202 PF01695 IstB_IS21: IstB-like 44.5 65 0.0014 23.9 5.2 40 35-74 47-86 (178)
203 TIGR00708 cobA cob(I)alamin ad 44.5 1.3E+02 0.0029 22.4 11.2 35 35-69 5-39 (173)
204 PRK02910 light-independent pro 44.3 29 0.00063 30.5 3.7 32 138-172 353-384 (519)
205 PRK09361 radB DNA repair and r 44.3 66 0.0014 24.4 5.3 37 36-72 24-60 (225)
206 PRK14106 murD UDP-N-acetylmura 44.1 49 0.0011 28.1 4.9 33 36-73 6-38 (450)
207 PRK10964 ADP-heptose:LPS hepto 44.1 38 0.00082 27.3 4.1 40 36-75 1-42 (322)
208 PLN02778 3,5-epimerase/4-reduc 43.9 43 0.00094 26.8 4.4 33 34-70 8-40 (298)
209 PF02702 KdpD: Osmosensitive K 43.9 57 0.0012 25.3 4.7 41 34-74 4-44 (211)
210 TIGR03880 KaiC_arch_3 KaiC dom 43.9 1.4E+02 0.003 22.6 11.5 47 35-81 16-62 (224)
211 PRK06522 2-dehydropantoate 2-r 43.8 33 0.00072 27.2 3.7 31 37-72 2-32 (304)
212 cd02032 Bchl_like This family 43.8 53 0.0011 25.7 4.8 37 37-73 2-38 (267)
213 TIGR01281 DPOR_bchL light-inde 43.6 55 0.0012 25.6 4.9 37 37-73 2-38 (268)
214 TIGR02700 flavo_MJ0208 archaeo 43.6 39 0.00084 26.3 3.9 37 42-78 5-44 (234)
215 COG1763 MobB Molybdopterin-gua 43.4 65 0.0014 23.8 4.9 38 36-73 3-40 (161)
216 TIGR03499 FlhF flagellar biosy 43.2 76 0.0017 25.4 5.7 39 36-74 195-235 (282)
217 PRK11889 flhF flagellar biosyn 43.0 70 0.0015 27.6 5.6 40 35-74 241-280 (436)
218 PF01380 SIS: SIS domain SIS d 42.9 61 0.0013 21.9 4.6 30 45-74 62-91 (131)
219 TIGR00959 ffh signal recogniti 42.8 1E+02 0.0022 26.5 6.6 42 35-76 99-141 (428)
220 COG1066 Sms Predicted ATP-depe 42.8 58 0.0013 28.1 5.0 45 35-80 93-137 (456)
221 PRK12921 2-dehydropantoate 2-r 42.6 28 0.00061 27.7 3.1 30 37-71 2-31 (305)
222 PF03721 UDPG_MGDP_dh_N: UDP-g 42.4 55 0.0012 24.5 4.5 32 36-72 1-32 (185)
223 TIGR00730 conserved hypothetic 42.3 56 0.0012 24.4 4.5 35 37-71 2-40 (178)
224 PRK06526 transposase; Provisio 42.3 40 0.00086 26.7 3.9 40 35-74 98-137 (254)
225 PRK08229 2-dehydropantoate 2-r 42.3 29 0.00062 28.2 3.2 32 36-72 3-34 (341)
226 PF13460 NAD_binding_10: NADH( 42.2 30 0.00065 25.0 3.0 21 53-73 12-32 (183)
227 PRK05541 adenylylsulfate kinas 42.1 89 0.0019 22.6 5.6 43 29-71 1-43 (176)
228 TIGR03492 conserved hypothetic 41.3 2.2E+02 0.0047 24.0 9.3 24 50-73 11-39 (396)
229 COG0451 WcaG Nucleoside-diphos 41.3 48 0.0011 26.0 4.3 32 38-73 3-34 (314)
230 TIGR01862 N2-ase-Ialpha nitrog 41.1 29 0.00062 29.8 3.1 28 142-172 382-409 (443)
231 TIGR00725 conserved hypothetic 41.1 51 0.0011 24.1 4.0 33 36-68 2-36 (159)
232 PRK06849 hypothetical protein; 41.0 75 0.0016 26.4 5.5 36 35-74 4-39 (389)
233 PF01012 ETF: Electron transfe 41.0 25 0.00054 25.4 2.4 37 136-172 79-118 (164)
234 PRK14494 putative molybdopteri 40.8 69 0.0015 25.1 4.9 34 37-70 3-36 (229)
235 TIGR01286 nifK nitrogenase mol 40.7 34 0.00073 30.1 3.5 28 142-172 432-459 (515)
236 COG3046 Uncharacterized protei 40.7 54 0.0012 28.3 4.5 26 48-73 51-76 (505)
237 PF09001 DUF1890: Domain of un 40.4 39 0.00084 24.4 3.1 26 49-74 13-38 (139)
238 PRK14098 glycogen synthase; Pr 40.4 31 0.00066 30.0 3.2 39 35-73 5-49 (489)
239 PRK08181 transposase; Validate 40.2 37 0.0008 27.2 3.4 62 13-74 82-145 (269)
240 PF02558 ApbA: Ketopantoate re 40.0 33 0.00072 24.1 2.9 20 54-73 12-31 (151)
241 PRK06067 flagellar accessory p 39.9 1.6E+02 0.0035 22.4 7.0 45 35-79 25-69 (234)
242 KOG0991 Replication factor C, 39.8 29 0.00062 27.9 2.6 34 29-62 42-75 (333)
243 PRK09183 transposase/IS protei 39.8 1.1E+02 0.0023 24.2 6.0 39 35-73 102-140 (259)
244 PRK09435 membrane ATPase/prote 39.8 96 0.0021 25.7 5.8 43 34-76 55-97 (332)
245 PRK13609 diacylglycerol glucos 39.7 32 0.00069 28.3 3.1 35 137-171 94-130 (380)
246 TIGR03088 stp2 sugar transfera 39.6 1E+02 0.0022 25.0 6.0 36 37-72 3-40 (374)
247 cd00395 Tyr_Trp_RS_core cataly 39.5 33 0.00071 27.5 3.0 24 47-71 16-39 (273)
248 PRK04155 chaperone protein Hch 39.3 1.2E+02 0.0026 24.6 6.3 62 12-73 20-100 (287)
249 COG4081 Uncharacterized protei 39.2 63 0.0014 23.2 4.0 38 37-74 5-43 (148)
250 TIGR00750 lao LAO/AO transport 39.1 1.6E+02 0.0034 23.8 6.9 41 34-74 33-73 (300)
251 PLN02166 dTDP-glucose 4,6-dehy 39.1 51 0.0011 28.2 4.3 44 25-72 110-153 (436)
252 CHL00072 chlL photochlorophyll 39.1 74 0.0016 25.6 5.0 37 37-73 2-38 (290)
253 PRK10416 signal recognition pa 38.9 93 0.002 25.5 5.6 40 35-74 114-153 (318)
254 cd01714 ETF_beta The electron 38.9 79 0.0017 24.0 4.9 36 137-172 98-139 (202)
255 cd01974 Nitrogenase_MoFe_beta 38.8 44 0.00095 28.6 3.9 28 142-172 372-399 (435)
256 cd01980 Chlide_reductase_Y Chl 38.8 41 0.00089 28.6 3.7 27 143-172 346-372 (416)
257 PRK12377 putative replication 38.8 47 0.001 26.3 3.7 43 36-78 102-144 (248)
258 PRK00421 murC UDP-N-acetylmura 38.6 56 0.0012 28.0 4.5 35 35-73 7-41 (461)
259 PF02603 Hpr_kinase_N: HPr Ser 38.4 38 0.00082 23.7 2.9 39 133-171 68-108 (127)
260 cd01122 GP4d_helicase GP4d_hel 38.2 95 0.0021 24.2 5.5 45 35-79 30-75 (271)
261 PF03853 YjeF_N: YjeF-related 38.2 42 0.00091 24.7 3.2 45 21-70 14-59 (169)
262 PRK06851 hypothetical protein; 38.0 93 0.002 26.2 5.6 43 36-78 215-257 (367)
263 cd03789 GT1_LPS_heptosyltransf 37.8 57 0.0012 25.6 4.2 42 37-78 1-44 (279)
264 KOG3062 RNA polymerase II elon 37.8 83 0.0018 25.1 4.8 30 36-65 2-31 (281)
265 cd01120 RecA-like_NTPases RecA 37.7 1.3E+02 0.0028 20.7 5.7 40 37-76 1-40 (165)
266 PF05724 TPMT: Thiopurine S-me 37.7 40 0.00087 26.0 3.2 29 38-72 40-68 (218)
267 cd02040 NifH NifH gene encodes 37.6 81 0.0018 24.5 5.0 38 37-74 3-40 (270)
268 TIGR01675 plant-AP plant acid 37.6 49 0.0011 25.9 3.6 25 50-74 123-147 (229)
269 TIGR00715 precor6x_red precorr 37.6 49 0.0011 26.3 3.7 33 37-74 2-34 (256)
270 PRK10751 molybdopterin-guanine 37.5 1.1E+02 0.0024 22.8 5.4 37 35-71 6-42 (173)
271 TIGR03274 methan_mark_7 putati 37.5 40 0.00087 27.3 3.1 36 36-71 71-107 (302)
272 PLN02695 GDP-D-mannose-3',5'-e 37.4 62 0.0013 26.8 4.5 34 34-71 20-53 (370)
273 PF03796 DnaB_C: DnaB-like hel 37.4 1.1E+02 0.0025 23.7 5.8 43 37-79 21-64 (259)
274 COG0300 DltE Short-chain dehyd 37.3 39 0.00084 27.1 3.1 21 52-72 19-39 (265)
275 PF02350 Epimerase_2: UDP-N-ac 37.2 52 0.0011 27.2 4.0 39 134-172 54-95 (346)
276 PRK15181 Vi polysaccharide bio 37.2 55 0.0012 26.7 4.1 41 23-71 7-47 (348)
277 PRK13608 diacylglycerol glucos 37.1 30 0.00065 28.9 2.5 35 35-69 5-43 (391)
278 TIGR02114 coaB_strep phosphopa 37.1 38 0.00082 26.3 2.9 29 40-70 18-46 (227)
279 TIGR02195 heptsyl_trn_II lipop 37.0 54 0.0012 26.5 4.0 40 37-76 1-42 (334)
280 PRK13354 tyrosyl-tRNA syntheta 36.9 47 0.001 28.4 3.7 35 37-72 37-74 (410)
281 TIGR02201 heptsyl_trn_III lipo 36.7 53 0.0011 26.7 3.9 41 37-77 1-43 (344)
282 PRK12726 flagellar biosynthesi 36.7 1.1E+02 0.0024 26.2 5.8 41 35-75 206-246 (407)
283 PF02571 CbiJ: Precorrin-6x re 36.6 50 0.0011 26.1 3.6 33 36-74 1-33 (249)
284 TIGR01283 nifE nitrogenase mol 36.6 44 0.00096 28.7 3.6 31 139-172 387-417 (456)
285 PRK06603 enoyl-(acyl carrier p 36.5 97 0.0021 24.0 5.3 34 36-70 8-41 (260)
286 cd00805 TyrRS_core catalytic c 36.5 45 0.00098 26.6 3.4 25 47-72 17-41 (269)
287 TIGR02622 CDP_4_6_dhtase CDP-g 36.4 71 0.0015 25.9 4.6 32 36-71 5-36 (349)
288 COG0569 TrkA K+ transport syst 36.4 35 0.00076 26.4 2.7 22 53-74 13-34 (225)
289 TIGR02015 BchY chlorophyllide 36.3 32 0.00069 29.4 2.6 28 142-172 350-377 (422)
290 PRK06718 precorrin-2 dehydroge 36.2 91 0.002 23.7 4.9 32 36-72 11-42 (202)
291 cd03792 GT1_Trehalose_phosphor 36.1 76 0.0017 25.8 4.8 28 47-74 13-40 (372)
292 PLN02924 thymidylate kinase 36.1 1.7E+02 0.0038 22.5 6.5 47 26-72 3-53 (220)
293 PRK00889 adenylylsulfate kinas 35.7 1.3E+02 0.0029 21.7 5.6 38 35-72 4-41 (175)
294 PRK09922 UDP-D-galactose:(gluc 35.6 89 0.0019 25.4 5.1 37 37-73 2-43 (359)
295 COG0552 FtsY Signal recognitio 35.6 1.4E+02 0.0031 24.9 6.1 42 35-76 139-180 (340)
296 TIGR00715 precor6x_red precorr 35.5 64 0.0014 25.6 4.1 31 142-172 192-227 (256)
297 PRK06523 short chain dehydroge 35.2 1.2E+02 0.0026 23.2 5.5 20 52-71 22-41 (260)
298 PRK07952 DNA replication prote 35.2 59 0.0013 25.6 3.8 41 36-76 100-140 (244)
299 cd01968 Nitrogenase_NifE_I Nit 35.1 45 0.00097 28.2 3.3 30 140-172 349-378 (410)
300 KOG1014 17 beta-hydroxysteroid 35.1 40 0.00088 27.7 2.9 33 37-72 50-82 (312)
301 TIGR02699 archaeo_AfpA archaeo 35.0 57 0.0012 24.4 3.5 33 45-77 8-42 (174)
302 TIGR01284 alt_nitrog_alph nitr 34.9 40 0.00086 29.1 3.0 30 140-172 388-417 (457)
303 PRK06079 enoyl-(acyl carrier p 34.7 88 0.0019 24.1 4.7 18 53-70 23-40 (252)
304 TIGR00745 apbA_panE 2-dehydrop 34.5 35 0.00076 26.9 2.5 19 54-72 5-23 (293)
305 COG2085 Predicted dinucleotide 34.4 49 0.0011 25.7 3.1 29 45-75 8-36 (211)
306 cd00860 ThrRS_anticodon ThrRS 34.4 1.1E+02 0.0024 19.1 4.5 34 37-71 3-36 (91)
307 COG0503 Apt Adenine/guanine ph 34.3 88 0.0019 23.3 4.5 35 138-172 44-80 (179)
308 PF10657 RC-P840_PscD: Photosy 34.2 68 0.0015 22.7 3.5 40 35-74 46-85 (144)
309 PRK14491 putative bifunctional 34.1 1.1E+02 0.0024 27.5 5.7 37 35-71 10-46 (597)
310 PF01935 DUF87: Domain of unkn 34.1 91 0.002 23.6 4.7 39 35-73 23-62 (229)
311 cd06167 LabA_like LabA_like pr 34.1 74 0.0016 22.3 3.9 31 37-72 102-132 (149)
312 PRK10037 cell division protein 34.1 97 0.0021 24.0 4.9 37 37-73 3-40 (250)
313 PF08357 SEFIR: SEFIR domain; 34.0 69 0.0015 22.6 3.8 31 38-68 4-35 (150)
314 PRK05802 hypothetical protein; 33.9 86 0.0019 25.7 4.7 38 37-76 174-211 (320)
315 PTZ00445 p36-lilke protein; Pr 33.8 47 0.001 25.9 2.9 28 47-74 74-102 (219)
316 TIGR01860 VNFD nitrogenase van 33.8 47 0.001 28.7 3.3 27 143-172 393-419 (461)
317 PRK13234 nifH nitrogenase redu 33.8 1.1E+02 0.0024 24.6 5.3 39 35-73 4-42 (295)
318 COG0543 UbiB 2-polyprenylpheno 33.8 63 0.0014 25.4 3.8 38 38-77 110-149 (252)
319 PRK14099 glycogen synthase; Pr 33.6 64 0.0014 28.0 4.1 39 35-73 3-47 (485)
320 PRK13608 diacylglycerol glucos 33.3 96 0.0021 25.8 5.0 35 137-171 94-130 (391)
321 PF04609 MCR_C: Methyl-coenzym 33.1 50 0.0011 26.4 3.0 35 36-70 72-107 (268)
322 COG3349 Uncharacterized conser 33.0 52 0.0011 28.8 3.3 23 52-74 12-34 (485)
323 PRK08309 short chain dehydroge 32.7 73 0.0016 23.6 3.8 30 37-71 2-31 (177)
324 PF13614 AAA_31: AAA domain; P 32.6 1.7E+02 0.0036 20.4 5.6 37 42-78 8-44 (157)
325 COG1255 Uncharacterized protei 32.5 53 0.0012 23.2 2.7 23 51-73 24-46 (129)
326 PRK07097 gluconate 5-dehydroge 32.5 93 0.002 24.0 4.6 20 52-71 23-42 (265)
327 cd03114 ArgK-like The function 32.4 1.3E+02 0.0027 21.5 4.9 36 38-73 2-37 (148)
328 PRK09219 xanthine phosphoribos 32.3 1E+02 0.0023 23.2 4.6 37 136-172 39-77 (189)
329 cd03809 GT1_mtfB_like This fam 32.0 48 0.001 26.1 2.9 28 47-74 16-43 (365)
330 cd00550 ArsA_ATPase Oxyanion-t 31.9 97 0.0021 24.3 4.6 37 38-74 3-39 (254)
331 COG1090 Predicted nucleoside-d 31.9 50 0.0011 26.9 2.8 21 53-73 12-32 (297)
332 KOG0541 Alkyl hydroperoxide re 31.8 49 0.0011 24.6 2.6 30 45-74 60-89 (171)
333 cd01977 Nitrogenase_VFe_alpha 31.8 46 0.001 28.2 2.9 27 143-172 354-380 (415)
334 cd06559 Endonuclease_V Endonuc 31.8 41 0.00088 25.9 2.3 26 147-172 93-125 (208)
335 TIGR02237 recomb_radB DNA repa 31.7 1.9E+02 0.0041 21.4 6.1 44 36-79 13-57 (209)
336 PLN00016 RNA-binding protein; 31.6 70 0.0015 26.4 3.9 35 35-73 52-90 (378)
337 smart00382 AAA ATPases associa 31.6 70 0.0015 21.0 3.3 39 35-73 2-40 (148)
338 PRK05708 2-dehydropantoate 2-r 31.5 53 0.0012 26.5 3.1 33 35-72 2-34 (305)
339 PF02142 MGS: MGS-like domain 31.4 50 0.0011 21.6 2.5 26 52-79 2-27 (95)
340 PF02302 PTS_IIB: PTS system, 31.4 1E+02 0.0022 19.5 4.0 36 37-72 1-37 (90)
341 PRK06921 hypothetical protein; 31.1 1E+02 0.0023 24.4 4.7 39 35-73 117-156 (266)
342 PF05728 UPF0227: Uncharacteri 31.0 80 0.0017 23.8 3.8 33 140-172 50-85 (187)
343 PF07755 DUF1611: Protein of u 31.0 1.2E+02 0.0027 24.8 5.1 39 35-73 112-151 (301)
344 cd05014 SIS_Kpsf KpsF-like pro 31.0 1.3E+02 0.0028 20.3 4.7 32 44-75 55-86 (128)
345 PF14626 RNase_Zc3h12a_2: Zc3h 30.8 75 0.0016 22.4 3.3 27 50-76 10-36 (122)
346 cd00984 DnaB_C DnaB helicase C 30.8 1.5E+02 0.0032 22.5 5.4 44 36-79 14-58 (242)
347 PRK13604 luxD acyl transferase 30.8 1.3E+02 0.0029 24.6 5.3 34 37-70 38-71 (307)
348 TIGR00376 DNA helicase, putati 30.7 86 0.0019 28.4 4.5 55 17-72 156-210 (637)
349 PRK14493 putative bifunctional 30.7 1.1E+02 0.0024 24.6 4.7 35 37-72 3-37 (274)
350 PRK04148 hypothetical protein; 30.7 58 0.0013 23.3 2.8 45 21-74 6-50 (134)
351 PF00391 PEP-utilizers: PEP-ut 30.6 52 0.0011 20.9 2.4 26 147-172 30-57 (80)
352 PLN02240 UDP-glucose 4-epimera 30.5 1.3E+02 0.0028 24.2 5.2 31 36-70 6-36 (352)
353 PLN00141 Tic62-NAD(P)-related 30.5 1.4E+02 0.003 22.9 5.2 32 35-70 17-48 (251)
354 COG4126 Hydantoin racemase [Am 30.5 1.3E+02 0.0027 23.7 4.7 38 135-172 162-201 (230)
355 TIGR01470 cysG_Nterm siroheme 30.5 1.3E+02 0.0028 22.9 4.9 34 36-74 10-43 (205)
356 PRK12828 short chain dehydroge 30.4 1.5E+02 0.0032 22.1 5.3 33 36-72 8-40 (239)
357 cd01141 TroA_d Periplasmic bin 30.4 67 0.0014 23.4 3.3 35 137-172 60-96 (186)
358 cd03116 MobB Molybdenum is an 30.3 1.4E+02 0.0031 21.7 4.9 35 37-71 3-37 (159)
359 TIGR02964 xanthine_xdhC xanthi 30.3 1.3E+02 0.0027 23.8 4.9 34 35-73 100-133 (246)
360 PRK14489 putative bifunctional 30.3 1.3E+02 0.0029 25.0 5.3 38 35-72 205-242 (366)
361 PRK13768 GTPase; Provisional 30.2 1.4E+02 0.003 23.5 5.2 37 37-73 4-40 (253)
362 PF01266 DAO: FAD dependent ox 30.1 56 0.0012 25.9 3.0 20 53-72 12-31 (358)
363 PF13604 AAA_30: AAA domain; P 30.0 1.6E+02 0.0036 22.0 5.4 38 36-73 19-56 (196)
364 TIGR03026 NDP-sugDHase nucleot 30.0 88 0.0019 26.4 4.3 31 37-72 2-32 (411)
365 PF06925 MGDG_synth: Monogalac 30.0 87 0.0019 22.7 3.8 26 134-159 76-101 (169)
366 PF06745 KaiC: KaiC; InterPro 29.9 1.8E+02 0.0038 22.0 5.7 47 35-81 19-66 (226)
367 PRK00094 gpsA NAD(P)H-dependen 29.8 69 0.0015 25.6 3.5 32 36-72 2-33 (325)
368 PF01656 CbiA: CobQ/CobB/MinD/ 29.8 1.2E+02 0.0026 21.9 4.6 33 43-75 7-39 (195)
369 cd02033 BchX Chlorophyllide re 29.7 1.4E+02 0.003 24.7 5.3 39 36-74 32-70 (329)
370 PRK06935 2-deoxy-D-gluconate 3 29.7 1.6E+02 0.0036 22.4 5.5 32 37-72 17-48 (258)
371 cd00806 TrpRS_core catalytic c 29.6 63 0.0014 25.9 3.2 27 47-73 15-41 (280)
372 PRK11519 tyrosine kinase; Prov 29.6 1.3E+02 0.0029 27.5 5.6 40 35-74 525-566 (719)
373 PLN02605 monogalactosyldiacylg 29.6 85 0.0018 25.9 4.1 38 135-172 88-133 (382)
374 PF08026 Antimicrobial_5: Bee 29.5 6.4 0.00014 21.4 -1.7 24 40-63 15-38 (39)
375 KOG0332 ATP-dependent RNA heli 29.4 75 0.0016 27.2 3.6 26 51-76 342-367 (477)
376 cd02037 MRP-like MRP (Multiple 29.4 82 0.0018 22.7 3.5 32 42-73 7-38 (169)
377 PRK12829 short chain dehydroge 29.3 1E+02 0.0022 23.5 4.3 34 35-72 11-44 (264)
378 PF06564 YhjQ: YhjQ protein; 29.3 1.4E+02 0.003 23.7 4.9 36 37-72 3-39 (243)
379 PRK06851 hypothetical protein; 29.2 1.3E+02 0.0029 25.3 5.1 40 36-75 31-70 (367)
380 COG0052 RpsB Ribosomal protein 29.2 94 0.002 24.8 3.9 25 148-172 157-183 (252)
381 PF12695 Abhydrolase_5: Alpha/ 29.2 1.7E+02 0.0036 19.7 5.0 30 46-75 9-38 (145)
382 KOG2585 Uncharacterized conser 29.1 1.5E+02 0.0033 25.7 5.4 36 35-73 266-303 (453)
383 PRK14477 bifunctional nitrogen 29.1 62 0.0014 30.7 3.5 31 139-172 381-411 (917)
384 cd06219 DHOD_e_trans_like1 FAD 29.1 1.6E+02 0.0034 22.8 5.3 38 37-76 99-136 (248)
385 COG0771 MurD UDP-N-acetylmuram 29.1 1.1E+02 0.0024 26.5 4.7 36 35-75 7-42 (448)
386 PRK07236 hypothetical protein; 29.0 1.4E+02 0.0029 24.7 5.2 33 35-72 6-38 (386)
387 PRK00652 lpxK tetraacyldisacch 29.0 1.5E+02 0.0032 24.5 5.3 37 36-72 50-88 (325)
388 COG1018 Hmp Flavodoxin reducta 28.9 2.5E+02 0.0054 22.4 6.5 60 15-76 76-150 (266)
389 CHL00181 cbbX CbbX; Provisiona 28.8 1.4E+02 0.003 24.0 5.1 42 23-64 47-88 (287)
390 PLN03050 pyridoxine (pyridoxam 28.7 63 0.0014 25.5 3.0 35 36-72 61-96 (246)
391 PRK15411 rcsA colanic acid cap 28.7 98 0.0021 23.4 4.0 26 142-167 42-71 (207)
392 PF01738 DLH: Dienelactone hyd 28.5 1.5E+02 0.0032 22.1 5.0 35 36-71 15-49 (218)
393 PRK09444 pntB pyridine nucleot 28.5 1.1E+02 0.0024 26.6 4.6 37 35-73 306-347 (462)
394 cd05008 SIS_GlmS_GlmD_1 SIS (S 28.5 1.7E+02 0.0037 19.6 4.9 31 45-75 55-85 (126)
395 TIGR01501 MthylAspMutase methy 28.5 2.2E+02 0.0048 20.3 6.5 45 36-80 2-46 (134)
396 TIGR03018 pepcterm_TyrKin exop 28.4 1.6E+02 0.0034 22.1 5.1 38 37-74 37-76 (207)
397 PF03446 NAD_binding_2: NAD bi 28.3 66 0.0014 23.2 2.9 32 36-72 2-33 (163)
398 PRK13230 nitrogenase reductase 28.2 1.5E+02 0.0032 23.4 5.1 36 37-72 3-38 (279)
399 PLN02427 UDP-apiose/xylose syn 28.2 1.4E+02 0.0029 24.7 5.1 42 26-71 4-47 (386)
400 PF01316 Arg_repressor: Argini 28.2 35 0.00075 21.6 1.2 20 52-71 22-41 (70)
401 PRK10219 DNA-binding transcrip 28.1 17 0.00036 24.3 -0.4 22 10-31 79-100 (107)
402 PRK05579 bifunctional phosphop 28.0 90 0.0019 26.5 4.0 42 36-78 7-48 (399)
403 PF08384 NPP: Pro-opiomelanoco 27.9 17 0.00037 20.9 -0.3 10 43-52 35-44 (45)
404 cd01018 ZntC Metal binding pro 27.9 92 0.002 24.6 3.8 34 138-171 208-243 (266)
405 PF04493 Endonuclease_5: Endon 27.8 70 0.0015 24.6 3.0 35 138-172 78-121 (206)
406 TIGR00521 coaBC_dfp phosphopan 27.8 80 0.0017 26.8 3.6 43 36-79 4-46 (390)
407 PRK11524 putative methyltransf 27.8 68 0.0015 25.6 3.1 35 137-171 196-233 (284)
408 COG2210 Peroxiredoxin family p 27.7 1.5E+02 0.0033 21.3 4.5 28 46-73 14-41 (137)
409 PRK14089 ipid-A-disaccharide s 27.7 1.7E+02 0.0037 24.3 5.5 27 146-172 75-106 (347)
410 PRK05703 flhF flagellar biosyn 27.7 1.7E+02 0.0037 25.0 5.6 39 36-74 222-262 (424)
411 PRK13982 bifunctional SbtC-lik 27.6 1E+02 0.0023 26.9 4.3 43 36-79 71-113 (475)
412 COG1348 NifH Nitrogenase subun 27.6 2E+02 0.0043 23.1 5.4 43 36-78 2-44 (278)
413 cd05013 SIS_RpiR RpiR-like pro 27.5 1.6E+02 0.0034 19.8 4.6 31 44-74 68-98 (139)
414 cd01147 HemV-2 Metal binding p 27.5 73 0.0016 24.5 3.2 28 145-172 72-102 (262)
415 TIGR03172 probable selenium-de 27.4 1.4E+02 0.003 23.4 4.7 29 46-74 8-36 (232)
416 PRK07231 fabG 3-ketoacyl-(acyl 27.1 73 0.0016 24.0 3.1 33 36-72 6-38 (251)
417 COG1440 CelA Phosphotransferas 27.1 1.8E+02 0.0038 19.9 4.5 37 36-72 2-38 (102)
418 TIGR01969 minD_arch cell divis 27.1 1.6E+02 0.0035 22.4 5.0 30 44-73 10-39 (251)
419 PRK00054 dihydroorotate dehydr 27.0 1.6E+02 0.0034 22.8 5.0 39 36-76 103-141 (250)
420 PRK11914 diacylglycerol kinase 27.0 1.8E+02 0.004 23.3 5.5 37 37-73 12-49 (306)
421 PF09334 tRNA-synt_1g: tRNA sy 26.9 71 0.0015 27.0 3.2 28 47-74 17-47 (391)
422 PRK13236 nitrogenase reductase 26.9 1.8E+02 0.0039 23.3 5.5 36 38-73 9-44 (296)
423 PRK14618 NAD(P)H-dependent gly 26.9 89 0.0019 25.3 3.7 33 35-72 4-36 (328)
424 TIGR01282 nifD nitrogenase mol 26.9 45 0.00097 28.9 2.0 31 138-171 395-425 (466)
425 PLN02293 adenine phosphoribosy 26.9 1.7E+02 0.0037 22.0 5.0 39 134-172 49-89 (187)
426 COG0665 DadA Glycine/D-amino a 26.8 94 0.002 25.3 3.9 35 35-74 4-38 (387)
427 TIGR01082 murC UDP-N-acetylmur 26.8 73 0.0016 27.1 3.3 31 38-72 2-32 (448)
428 PRK13869 plasmid-partitioning 26.8 1.5E+02 0.0032 25.2 5.1 38 37-74 123-161 (405)
429 TIGR01689 EcbF-BcbF capsule bi 26.8 1.1E+02 0.0024 21.5 3.7 25 51-75 28-52 (126)
430 PRK10490 sensor protein KdpD; 26.7 1.2E+02 0.0025 28.7 4.8 42 33-74 22-63 (895)
431 TIGR01680 Veg_Stor_Prot vegeta 26.7 1E+02 0.0022 25.0 3.8 28 48-75 146-173 (275)
432 PRK15043 transcriptional regul 26.6 1.2E+02 0.0026 24.1 4.1 39 35-74 162-200 (243)
433 PF01494 FAD_binding_3: FAD bi 26.6 72 0.0016 25.3 3.1 21 53-73 14-34 (356)
434 COG1432 Uncharacterized conser 26.5 1.7E+02 0.0037 21.8 4.9 33 36-73 112-144 (181)
435 PRK05579 bifunctional phosphop 26.5 72 0.0016 27.1 3.1 21 52-72 217-237 (399)
436 cd06192 DHOD_e_trans_like FAD/ 26.3 2.1E+02 0.0046 21.9 5.6 39 36-76 98-136 (243)
437 PF01297 TroA: Periplasmic sol 26.1 69 0.0015 24.9 2.8 33 139-171 191-225 (256)
438 TIGR01861 ANFD nitrogenase iro 26.0 80 0.0017 27.8 3.4 27 143-172 394-420 (513)
439 PF02780 Transketolase_C: Tran 25.9 1.7E+02 0.0037 19.9 4.5 36 35-72 9-44 (124)
440 COG0003 ArsA Predicted ATPase 25.9 1.8E+02 0.004 24.0 5.3 39 36-74 2-41 (322)
441 COG2086 FixA Electron transfer 25.7 1.3E+02 0.0029 24.0 4.3 35 138-172 102-142 (260)
442 cd01075 NAD_bind_Leu_Phe_Val_D 25.7 1.5E+02 0.0032 22.4 4.5 31 35-70 28-58 (200)
443 cd01973 Nitrogenase_VFe_beta_l 25.6 96 0.0021 26.8 3.8 23 147-172 381-403 (454)
444 CHL00194 ycf39 Ycf39; Provisio 25.4 73 0.0016 25.5 2.9 32 37-72 2-33 (317)
445 cd01423 MGS_CPS_I_III Methylgl 25.3 1E+02 0.0022 20.9 3.2 24 50-75 13-36 (116)
446 PRK05912 tyrosyl-tRNA syntheta 25.3 83 0.0018 26.8 3.3 35 36-71 36-73 (408)
447 PRK14495 putative molybdopteri 25.2 1.7E+02 0.0037 25.5 5.1 35 37-71 3-37 (452)
448 PLN02662 cinnamyl-alcohol dehy 25.2 75 0.0016 25.2 2.9 33 36-72 5-37 (322)
449 cd01394 radB RadB. The archaea 25.1 2.2E+02 0.0048 21.3 5.4 38 36-73 20-57 (218)
450 PRK12744 short chain dehydroge 25.1 1.9E+02 0.0042 22.0 5.2 19 52-70 21-39 (257)
451 PF00175 NAD_binding_1: Oxidor 25.1 1.1E+02 0.0024 19.8 3.4 30 47-76 6-37 (109)
452 PRK13185 chlL protochlorophyll 25.1 1.8E+02 0.0039 22.7 5.0 37 37-73 4-40 (270)
453 cd02117 NifH_like This family 25.1 1.7E+02 0.0037 21.9 4.8 35 38-72 3-37 (212)
454 PRK08533 flagellar accessory p 25.0 3.2E+02 0.007 21.0 6.8 44 35-78 24-67 (230)
455 TIGR01287 nifH nitrogenase iro 24.9 1.7E+02 0.0037 22.9 4.9 36 37-72 2-37 (275)
456 PRK05653 fabG 3-ketoacyl-(acyl 24.8 84 0.0018 23.5 3.0 33 36-72 6-38 (246)
457 cd03109 DTBS Dethiobiotin synt 24.8 1.8E+02 0.0039 20.2 4.5 35 39-73 3-37 (134)
458 PRK07667 uridine kinase; Provi 24.7 2.7E+02 0.0059 20.6 5.8 40 35-74 17-56 (193)
459 TIGR02069 cyanophycinase cyano 24.7 2.4E+02 0.0052 22.2 5.6 50 22-72 16-66 (250)
460 PRK12770 putative glutamate sy 24.7 2.6E+02 0.0057 22.8 6.1 34 35-73 18-51 (352)
461 PF01936 NYN: NYN domain; Int 24.6 65 0.0014 22.2 2.2 31 36-71 97-127 (146)
462 PF07972 Flavodoxin_NdrI: NrdI 24.6 32 0.0007 24.2 0.6 19 154-172 87-105 (122)
463 KOG1455 Lysophospholipase [Lip 24.4 1.8E+02 0.0039 24.0 4.9 60 12-72 31-91 (313)
464 PF12846 AAA_10: AAA-like doma 24.3 1.6E+02 0.0034 22.8 4.6 37 36-72 2-38 (304)
465 PRK06194 hypothetical protein; 24.3 82 0.0018 24.5 3.0 20 52-71 19-38 (287)
466 PHA02518 ParA-like protein; Pr 24.3 2.1E+02 0.0046 21.0 5.1 31 44-74 10-40 (211)
467 PF01583 APS_kinase: Adenylyls 24.3 2.4E+02 0.0051 20.7 5.1 37 36-72 3-39 (156)
468 cd05844 GT1_like_7 Glycosyltra 24.2 1E+02 0.0022 24.6 3.6 35 138-172 73-109 (367)
469 TIGR01743 purR_Bsub pur operon 24.1 1.6E+02 0.0035 23.7 4.5 30 143-172 124-155 (268)
470 PRK11823 DNA repair protein Ra 24.1 2.1E+02 0.0046 24.6 5.6 44 36-79 81-124 (446)
471 PRK13700 conjugal transfer pro 24.1 1.8E+02 0.0038 27.0 5.2 47 27-73 177-223 (732)
472 TIGR03574 selen_PSTK L-seryl-t 24.1 1.4E+02 0.0031 23.0 4.3 35 38-72 2-36 (249)
473 PRK13789 phosphoribosylamine-- 24.0 1.3E+02 0.0027 25.8 4.2 35 35-74 4-38 (426)
474 PRK06101 short chain dehydroge 24.0 90 0.0019 23.7 3.1 19 53-71 15-33 (240)
475 PRK06179 short chain dehydroge 23.9 89 0.0019 24.1 3.1 32 37-72 6-37 (270)
476 PLN02583 cinnamoyl-CoA reducta 23.9 88 0.0019 24.8 3.1 32 36-71 7-38 (297)
477 TIGR01307 pgm_bpd_ind 2,3-bisp 23.9 1.6E+02 0.0034 26.1 4.7 56 12-70 87-145 (501)
478 PRK13235 nifH nitrogenase redu 23.9 1.8E+02 0.0039 22.8 4.8 36 37-72 3-38 (274)
479 KOG1209 1-Acyl dihydroxyaceton 23.9 1.3E+02 0.0028 23.9 3.8 17 54-70 23-39 (289)
480 PRK14620 NAD(P)H-dependent gly 23.9 89 0.0019 25.3 3.1 31 37-72 2-32 (326)
481 cd02035 ArsA ArsA ATPase funct 23.8 1.9E+02 0.0041 21.9 4.8 37 38-74 2-38 (217)
482 PRK05434 phosphoglyceromutase; 23.8 1.5E+02 0.0032 26.3 4.6 55 13-70 92-149 (507)
483 PRK10481 hypothetical protein; 23.8 1.6E+02 0.0035 23.0 4.4 28 145-172 180-210 (224)
484 PRK12827 short chain dehydroge 23.7 86 0.0019 23.6 2.9 32 36-71 7-38 (249)
485 PRK07666 fabG 3-ketoacyl-(acyl 23.6 93 0.002 23.4 3.1 22 51-72 19-40 (239)
486 TIGR03371 cellulose_yhjQ cellu 23.6 1.9E+02 0.0041 21.9 4.8 37 38-74 4-41 (246)
487 PF00185 OTCace: Aspartate/orn 23.5 2.3E+02 0.0049 20.5 5.0 36 36-74 3-38 (158)
488 CHL00175 minD septum-site dete 23.5 2.1E+02 0.0045 22.5 5.1 39 35-73 14-54 (281)
489 PRK07454 short chain dehydroge 23.5 92 0.002 23.5 3.0 22 51-72 18-39 (241)
490 PF01370 Epimerase: NAD depend 23.5 1.5E+02 0.0033 22.0 4.2 24 53-76 12-35 (236)
491 PRK07102 short chain dehydroge 23.4 91 0.002 23.6 3.0 21 52-72 14-34 (243)
492 PF01963 TraB: TraB family; I 23.4 55 0.0012 25.3 1.8 23 45-67 235-257 (259)
493 PF03767 Acid_phosphat_B: HAD 23.4 77 0.0017 24.6 2.5 25 51-75 119-143 (229)
494 PRK07890 short chain dehydroge 23.3 94 0.002 23.6 3.1 20 52-71 18-37 (258)
495 PRK06180 short chain dehydroge 23.3 92 0.002 24.3 3.0 32 37-72 6-37 (277)
496 PRK03372 ppnK inorganic polyph 23.2 2.1E+02 0.0046 23.4 5.2 37 35-71 5-42 (306)
497 TIGR02016 BchX chlorophyllide 23.2 2E+02 0.0043 23.2 5.0 37 37-73 2-38 (296)
498 PRK13232 nifH nitrogenase redu 23.2 1.8E+02 0.0038 22.8 4.7 36 37-72 3-38 (273)
499 PRK08335 translation initiatio 23.1 81 0.0018 25.4 2.7 23 51-73 148-170 (275)
500 TIGR01380 glut_syn glutathione 23.1 1.3E+02 0.0028 24.4 3.9 27 48-74 16-42 (312)
No 1
>PLN02534 UDP-glycosyltransferase
Probab=99.89 E-value=3.3e-22 Score=170.94 Aligned_cols=135 Identities=44% Similarity=0.904 Sum_probs=100.5
Q ss_pred cceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCChhhhhhhhhhhhcCCCCeEEEEeeCCCCCCCCCCCCCccc
Q 039991 35 QLHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPANTPYVSKSVERANELGIEMDVKTVKFPSVEAGLPDGCENLD 114 (172)
Q Consensus 35 ~~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~p~~~~~~~ 114 (172)
+.||+++|+|++||++||++||+.|++||+.||+++++.+..++.+........+..++++.+|++...+++|++.+..+
T Consensus 8 ~~Hvv~vPfpaqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~~~~i~~~~lp~p~~~dglp~~~~~~~ 87 (491)
T PLN02534 8 QLHFVLIPLMAQGHMIPMIDMARLLAERGVIVSLVTTPQNASRFAKTIDRARESGLPIRLVQIPFPCKEVGLPIGCENLD 87 (491)
T ss_pred CCEEEEECCCCcchHHHHHHHHHHHHhCCCeEEEEECCCcHHHHhhhhhhccccCCCeEEEEcCCCCccCCCCCCccccc
Confidence 47999999999999999999999999999999999999886655543321100112489999987643357877644322
Q ss_pred ccchhhhHHHHHHHHHHHHHhHHHHHHHhhhC--CCCEEEecCCCccHHHHHHHhCCCCC
Q 039991 115 AITNEVNKELIVKFFGATTKLQEPLEQLLRDH--KPDCLVADIFFPWATDAAAKFGIPRL 172 (172)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~--~~d~VI~D~~~~~a~~vA~~lgiP~v 172 (172)
..+.. .....+......+.+.+++++++. +++|||+|.+++|+.++|+++|||++
T Consensus 88 ~~~~~---~~~~~~~~~~~~l~~~l~~lL~~~~~pp~cIV~D~f~~Wa~dVA~~lgIP~v 144 (491)
T PLN02534 88 TLPSR---DLLRKFYDAVDKLQQPLERFLEQAKPPPSCIISDKCLSWTSKTAQRFNIPRI 144 (491)
T ss_pred cCCcH---HHHHHHHHHHHHhHHHHHHHHHhcCCCCcEEEECCccHHHHHHHHHhCCCeE
Confidence 22211 233344455567888888888763 68999999999999999999999975
No 2
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=99.89 E-value=3.2e-22 Score=170.82 Aligned_cols=131 Identities=31% Similarity=0.633 Sum_probs=99.2
Q ss_pred CCcceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCChhhhhhhhhhhhcCCCCeEEEEeeCCCCCCCCCCCCCc
Q 039991 33 IPQLHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPANTPYVSKSVERANELGIEMDVKTVKFPSVEAGLPDGCEN 112 (172)
Q Consensus 33 ~~~~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~p~~~~~ 112 (172)
..+.||+++|+|++||++||++||+.|+++|+.||+++++.+..++.+...+ .+.++++.+|++.. +++|++.+.
T Consensus 7 ~~~~HVvl~PfpaqGHi~P~l~LAk~La~~G~~VTfv~T~~n~~~~~~~~~~----~~~i~~~~lp~P~~-~~lPdG~~~ 81 (477)
T PLN02863 7 PAGTHVLVFPFPAQGHMIPLLDLTHRLALRGLTITVLVTPKNLPFLNPLLSK----HPSIETLVLPFPSH-PSIPSGVEN 81 (477)
T ss_pred CCCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHhhhccc----CCCeeEEeCCCCCc-CCCCCCCcC
Confidence 3468999999999999999999999999999999999999887665543211 23588888886543 578877654
Q ss_pred ccccchhhhHHHHHHHHHHHHHhHHHHHHHhhhC--CCCEEEecCCCccHHHHHHHhCCCCC
Q 039991 113 LDAITNEVNKELIVKFFGATTKLQEPLEQLLRDH--KPDCLVADIFFPWATDAAAKFGIPRL 172 (172)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~--~~d~VI~D~~~~~a~~vA~~lgiP~v 172 (172)
....+. +.+..+......+.+.+++++++. +++|||+|++++|+.++|+++|||++
T Consensus 82 ~~~~~~----~~~~~~~~a~~~~~~~~~~~l~~~~~~p~cvI~D~f~~Wa~dVA~e~GIP~~ 139 (477)
T PLN02863 82 VKDLPP----SGFPLMIHALGELYAPLLSWFRSHPSPPVAIISDMFLGWTQNLACQLGIRRF 139 (477)
T ss_pred hhhcch----hhHHHHHHHHHHhHHHHHHHHHhCCCCCeEEEEcCchHhHHHHHHHcCCCEE
Confidence 332221 223334445556677777777763 67999999999999999999999975
No 3
>PLN02670 transferase, transferring glycosyl groups
Probab=99.88 E-value=8.5e-22 Score=167.73 Aligned_cols=130 Identities=32% Similarity=0.543 Sum_probs=97.5
Q ss_pred cceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCChhhhhhhhhhhhcCCCCeEEEEeeCCCCCCCCCCCCCccc
Q 039991 35 QLHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPANTPYVSKSVERANELGIEMDVKTVKFPSVEAGLPDGCENLD 114 (172)
Q Consensus 35 ~~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~p~~~~~~~ 114 (172)
+.||+++|+|++||++||++||++|++||+.||+++++.+..++...... ....++++.+|++.. +++|++.+...
T Consensus 6 ~~HVvl~P~paqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~---~~~~i~~~~lp~p~~-dglp~~~~~~~ 81 (472)
T PLN02670 6 VLHVAMFPWLAMGHLIPFLRLSKLLAQKGHKISFISTPRNLHRLPKIPSQ---LSSSITLVSFPLPSV-PGLPSSAESST 81 (472)
T ss_pred CcEEEEeCChhhhHHHHHHHHHHHHHhCCCEEEEEeCCchHHhhhhcccc---CCCCeeEEECCCCcc-CCCCCCccccc
Confidence 57999999999999999999999999999999999999876554421110 122489999987643 46776543222
Q ss_pred ccchhhhHHHHHHHHHHHHHhHHHHHHHhhhCCCCEEEecCCCccHHHHHHHhCCCCC
Q 039991 115 AITNEVNKELIVKFFGATTKLQEPLEQLLRDHKPDCLVADIFFPWATDAAAKFGIPRL 172 (172)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~d~VI~D~~~~~a~~vA~~lgiP~v 172 (172)
+.+. .....+......+.+.+++++++.+++|||+|.+++|+.++|+++|||++
T Consensus 82 ~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~cvI~D~f~~wa~~vA~~~gIP~~ 135 (472)
T PLN02670 82 DVPY----TKQQLLKKAFDLLEPPLTTFLETSKPDWIIYDYASHWLPSIAAELGISKA 135 (472)
T ss_pred ccch----hhHHHHHHHHHHhHHHHHHHHHhCCCcEEEECCcchhHHHHHHHcCCCEE
Confidence 1210 11122333456788889999888889999999999999999999999975
No 4
>PLN03007 UDP-glucosyltransferase family protein
Probab=99.87 E-value=4.6e-21 Score=164.15 Aligned_cols=139 Identities=55% Similarity=1.038 Sum_probs=96.7
Q ss_pred CcceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCChhhhhhhhhhhhc--CCCCeEEEEeeCCCCCCCCCCCCC
Q 039991 34 PQLHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPANTPYVSKSVERANE--LGIEMDVKTVKFPSVEAGLPDGCE 111 (172)
Q Consensus 34 ~~~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~~~~~~~~~~--~~~~i~~~~l~~~~~~~~~p~~~~ 111 (172)
++.||+++|+|++||++|+++||++|++||++||+++++.+...+.+...+... .+..+++..++++..++++|++.+
T Consensus 4 ~~~hVvlvp~pa~GHi~P~L~LAk~L~~rG~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~glP~g~e 83 (482)
T PLN03007 4 EKLHILFFPFMAHGHMIPTLDMAKLFSSRGAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVELGLPEGCE 83 (482)
T ss_pred CCcEEEEECCCccccHHHHHHHHHHHHhCCCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCcCCCCCCcc
Confidence 367999999999999999999999999999999999999887555443221100 111245666665533235776543
Q ss_pred cccccc---hhhhHHHHHHHHHHHHHhHHHHHHHhhhCCCCEEEecCCCccHHHHHHHhCCCCC
Q 039991 112 NLDAIT---NEVNKELIVKFFGATTKLQEPLEQLLRDHKPDCLVADIFFPWATDAAAKFGIPRL 172 (172)
Q Consensus 112 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~d~VI~D~~~~~a~~vA~~lgiP~v 172 (172)
.....+ ..........+.+....+.+.+++++++.++||||+|.+++|+..+|+++|||+|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~IV~D~~~~w~~~vA~~lgIP~v 147 (482)
T PLN03007 84 NVDFITSNNNDDSGDLFLKFLFSTKYFKDQLEKLLETTRPDCLVADMFFPWATEAAEKFGVPRL 147 (482)
T ss_pred cccccccccccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEECCcchhHHHHHHHhCCCeE
Confidence 321100 0000022333444556788888888888889999999999999999999999975
No 5
>PLN00414 glycosyltransferase family protein
Probab=99.86 E-value=4.2e-21 Score=162.75 Aligned_cols=128 Identities=25% Similarity=0.507 Sum_probs=94.2
Q ss_pred cceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCChhhhhhhhhhhhcCCCCeEEEEeeCCCCCCCCCCCCCccc
Q 039991 35 QLHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPANTPYVSKSVERANELGIEMDVKTVKFPSVEAGLPDGCENLD 114 (172)
Q Consensus 35 ~~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~p~~~~~~~ 114 (172)
+.||+++|+|++||++||++||+.|+++|++||+++++.+...+.+.. . ..+.+++..++++.. +++|++.+...
T Consensus 4 ~~HVvlvPfpaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~i~~~~-~---~~~~i~~~~i~lP~~-dGLP~g~e~~~ 78 (446)
T PLN00414 4 KFHAFMYPWFGFGHMIPYLHLANKLAEKGHRVTFFLPKKAHKQLQPLN-L---FPDSIVFEPLTLPPV-DGLPFGAETAS 78 (446)
T ss_pred CCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCchhhhhcccc-c---CCCceEEEEecCCCc-CCCCCcccccc
Confidence 589999999999999999999999999999999999997754443221 0 122478877765432 46776643222
Q ss_pred ccchhhhHHHHHHHHHHHHHhHHHHHHHhhhCCCCEEEecCCCccHHHHHHHhCCCCC
Q 039991 115 AITNEVNKELIVKFFGATTKLQEPLEQLLRDHKPDCLVADIFFPWATDAAAKFGIPRL 172 (172)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~d~VI~D~~~~~a~~vA~~lgiP~v 172 (172)
+.+. .....+.+....+.+.+++++++.++||||+|+ ++|+.++|+++|||++
T Consensus 79 ~l~~----~~~~~~~~a~~~l~~~l~~~L~~~~p~cVV~D~-~~wa~~vA~~lgIP~~ 131 (446)
T PLN00414 79 DLPN----STKKPIFDAMDLLRDQIEAKVRALKPDLIFFDF-VHWVPEMAKEFGIKSV 131 (446)
T ss_pred cchh----hHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECC-chhHHHHHHHhCCCEE
Confidence 1211 112234445567888888888877899999995 8999999999999975
No 6
>PLN02208 glycosyltransferase family protein
Probab=99.85 E-value=9.4e-21 Score=160.45 Aligned_cols=128 Identities=23% Similarity=0.456 Sum_probs=94.4
Q ss_pred cceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCChhhhhhhhhhhhcCCCCeEEEEeeCCCCCCCCCCCCCccc
Q 039991 35 QLHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPANTPYVSKSVERANELGIEMDVKTVKFPSVEAGLPDGCENLD 114 (172)
Q Consensus 35 ~~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~p~~~~~~~ 114 (172)
+.||+++|+|++||++|+++||+.|++||++||+++++.+...+.+. + +.+..+++..++.++. +++|++.+..+
T Consensus 4 ~~hvv~~P~paqGHi~P~l~LAk~La~~G~~VT~vtt~~~~~~i~~~--~--a~~~~i~~~~l~~p~~-dgLp~g~~~~~ 78 (442)
T PLN02208 4 KFHAFMFPWFAFGHMIPFLHLANKLAEKGHRVTFLLPKKAQKQLEHH--N--LFPDSIVFHPLTIPPV-NGLPAGAETTS 78 (442)
T ss_pred CCEEEEecCccccHHHHHHHHHHHHHhCCCEEEEEeccchhhhhhcc--c--CCCCceEEEEeCCCCc-cCCCCCccccc
Confidence 68999999999999999999999999999999999988765444321 0 0122477887765422 46776643221
Q ss_pred ccchhhhHHHHHHHHHHHHHhHHHHHHHhhhCCCCEEEecCCCccHHHHHHHhCCCCC
Q 039991 115 AITNEVNKELIVKFFGATTKLQEPLEQLLRDHKPDCLVADIFFPWATDAAAKFGIPRL 172 (172)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~d~VI~D~~~~~a~~vA~~lgiP~v 172 (172)
.... +....+....+.+.+.+++++++.++||||+| +++|+.++|+++|||++
T Consensus 79 ~l~~----~l~~~~~~~~~~~~~~l~~~L~~~~~~cVV~D-~~~wa~~vA~e~giP~~ 131 (442)
T PLN02208 79 DIPI----SMDNLLSEALDLTRDQVEAAVRALRPDLIFFD-FAQWIPEMAKEHMIKSV 131 (442)
T ss_pred chhH----HHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEC-CcHhHHHHHHHhCCCEE
Confidence 1110 12223444566788889999888899999999 68999999999999975
No 7
>PLN02173 UDP-glucosyl transferase family protein
Probab=99.85 E-value=7.7e-21 Score=161.07 Aligned_cols=119 Identities=24% Similarity=0.472 Sum_probs=87.0
Q ss_pred CcceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCChhhhhhhhhhhhcCCCCeEEEEeeCCCCCCCCCCC-CCc
Q 039991 34 PQLHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPANTPYVSKSVERANELGIEMDVKTVKFPSVEAGLPDG-CEN 112 (172)
Q Consensus 34 ~~~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~p~~-~~~ 112 (172)
++.||+++|+|++||++||++||++|+++|+.||+++++.+..++... ..++++++.+| +++|++ .+.
T Consensus 4 ~~~hvv~~P~paqGHi~P~l~lAk~La~~G~~vT~v~t~~~~~~~~~~------~~~~i~~~~ip-----dglp~~~~~~ 72 (449)
T PLN02173 4 MRGHVLAVPFPSQGHITPIRQFCKRLHSKGFKTTHTLTTFIFNTIHLD------PSSPISIATIS-----DGYDQGGFSS 72 (449)
T ss_pred CCcEEEEecCcccccHHHHHHHHHHHHcCCCEEEEEECCchhhhcccC------CCCCEEEEEcC-----CCCCCccccc
Confidence 467999999999999999999999999999999999999764433221 12358888885 367763 222
Q ss_pred ccccchhhhHHHHHHHHHHH-HHhHHHHHHHhhh----CCC-CEEEecCCCccHHHHHHHhCCCCC
Q 039991 113 LDAITNEVNKELIVKFFGAT-TKLQEPLEQLLRD----HKP-DCLVADIFFPWATDAAAKFGIPRL 172 (172)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~ll~~----~~~-d~VI~D~~~~~a~~vA~~lgiP~v 172 (172)
.. . ...+.... ..+.+.+++++++ .+| +|||+|.|++|+.++|+++|||+|
T Consensus 73 ~~--------~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~Pv~cvV~D~f~~Wa~dVA~elgIP~v 129 (449)
T PLN02173 73 AG--------S-VPEYLQNFKTFGSKTVADIIRKHQSTDNPITCIVYDSFMPWALDLAREFGLAAA 129 (449)
T ss_pred cc--------C-HHHHHHHHHHhhhHHHHHHHHHhhccCCCceEEEECCcchhHHHHHHHhCCCEE
Confidence 11 1 11222222 3566677776654 244 999999999999999999999975
No 8
>PLN02764 glycosyltransferase family protein
Probab=99.85 E-value=2.2e-20 Score=158.24 Aligned_cols=132 Identities=23% Similarity=0.477 Sum_probs=94.7
Q ss_pred CCCCCCcceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCChhhhhhhhhhhhcCCCCeEEEEeeCCCCCCCCCC
Q 039991 29 MGSEIPQLHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPANTPYVSKSVERANELGIEMDVKTVKFPSVEAGLPD 108 (172)
Q Consensus 29 M~~~~~~~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~p~ 108 (172)
|++ .+.||+++|+|++||++||++||+.|+++|+.||+++++.+...+.+ +.. ...+++++.++.+.. +++|+
T Consensus 1 ~~~--~~~Hvvl~P~paqGHi~P~l~LAk~La~~g~~vT~~tt~~~~~~~~~-~~~---~~~~~~v~~~~~p~~-~glp~ 73 (453)
T PLN02764 1 MGG--LKFHVLMYPWFATGHMTPFLFLANKLAEKGHTVTFLLPKKALKQLEH-LNL---FPHNIVFRSVTVPHV-DGLPV 73 (453)
T ss_pred CCC--CCcEEEEECCcccccHHHHHHHHHHHHhCCCEEEEEeCcchhhhhcc-ccc---CCCCceEEEEECCCc-CCCCC
Confidence 553 46899999999999999999999999999999999999987544433 110 111244444444322 47777
Q ss_pred CCCcccccchhhhHHHHHHHHHHHHHhHHHHHHHhhhCCCCEEEecCCCccHHHHHHHhCCCCC
Q 039991 109 GCENLDAITNEVNKELIVKFFGATTKLQEPLEQLLRDHKPDCLVADIFFPWATDAAAKFGIPRL 172 (172)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~d~VI~D~~~~~a~~vA~~lgiP~v 172 (172)
+.+...+.+. .....+......+.+.+++++++.++||||+|+ +.|+.++|+++|||+|
T Consensus 74 g~e~~~~~~~----~~~~~~~~a~~~~~~~~~~~l~~~~~~~iV~D~-~~w~~~vA~~~gIP~~ 132 (453)
T PLN02764 74 GTETVSEIPV----TSADLLMSAMDLTRDQVEVVVRAVEPDLIFFDF-AHWIPEVARDFGLKTV 132 (453)
T ss_pred cccccccCCh----hHHHHHHHHHHHhHHHHHHHHHhCCCCEEEECC-chhHHHHHHHhCCCEE
Confidence 6443222221 223344445567788899998887889999995 9999999999999975
No 9
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=99.84 E-value=2.3e-20 Score=158.47 Aligned_cols=123 Identities=24% Similarity=0.403 Sum_probs=86.1
Q ss_pred CCCCCCcceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCChhhhhhhhhhhhcCCCCeEEEEeeCCCCCCCCCC
Q 039991 29 MGSEIPQLHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPANTPYVSKSVERANELGIEMDVKTVKFPSVEAGLPD 108 (172)
Q Consensus 29 M~~~~~~~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~p~ 108 (172)
|+++..+.||+++|+|++||++||++||++|++||+.||+++++.+... .. . ...++++..+| +++|+
T Consensus 1 ~~~~~~~~HVvlvPfpaqGHi~P~l~LAk~La~~G~~VT~v~T~~n~~~--~~-~----~~~~i~~~~ip-----~glp~ 68 (451)
T PLN02410 1 MEEKPARRRVVLVPVPAQGHISPMMQLAKTLHLKGFSITIAQTKFNYFS--PS-D----DFTDFQFVTIP-----ESLPE 68 (451)
T ss_pred CCcCCCCCEEEEECCCccccHHHHHHHHHHHHcCCCEEEEEeCcccccc--cc-c----CCCCeEEEeCC-----CCCCc
Confidence 7766667899999999999999999999999999999999999976421 11 0 11247777775 35665
Q ss_pred C-CCcccccchhhhHHHHHHHHHHHHHhHHHHHHHhhh------CCCCEEEecCCCccHHHHHHHhCCCCC
Q 039991 109 G-CENLDAITNEVNKELIVKFFGATTKLQEPLEQLLRD------HKPDCLVADIFFPWATDAAAKFGIPRL 172 (172)
Q Consensus 109 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~------~~~d~VI~D~~~~~a~~vA~~lgiP~v 172 (172)
+ .+. .... .++..+ ...+.+.+++++++ .+++|||+|++++|+.++|+++|||+|
T Consensus 69 ~~~~~---~~~~---~~~~~~---~~~~~~~~~~~L~~l~~~~~~p~~cVI~D~f~~Wa~dvA~~lgIP~v 130 (451)
T PLN02410 69 SDFKN---LGPI---EFLHKL---NKECQVSFKDCLGQLVLQQGNEIACVVYDEFMYFAEAAAKEFKLPNV 130 (451)
T ss_pred ccccc---cCHH---HHHHHH---HHHhHHHHHHHHHHHHhccCCCcEEEEECCcchHHHHHHHHcCCCEE
Confidence 3 221 1111 222222 22344444444432 257999999999999999999999975
No 10
>PLN02210 UDP-glucosyl transferase
Probab=99.82 E-value=1.2e-19 Score=154.42 Aligned_cols=119 Identities=22% Similarity=0.433 Sum_probs=85.3
Q ss_pred CcceEEEEcCCCccchHHHHHHHHH--HHHCCCEEEEEeCCCChhhhhhhhhhhhcCCCCeEEEEeeCCCCCCCCCCCCC
Q 039991 34 PQLHVFFFPFMAHGHMIPIVDMAKL--FVTRGVKASVITTPANTPYVSKSVERANELGIEMDVKTVKFPSVEAGLPDGCE 111 (172)
Q Consensus 34 ~~~~Ilv~p~p~~GH~~P~l~La~~--La~rGh~Vt~it~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~p~~~~ 111 (172)
.+.||+++|+|++||++||++||++ |++||++|||++++.+.+.++. ..+ ....+++..+| +++|++.+
T Consensus 7 ~~~hvv~~P~pa~GHi~P~l~La~~L~L~~~G~~VT~v~t~~~~~~~~~-~~~---~~~~~~~~~~~-----~glp~~~~ 77 (456)
T PLN02210 7 QETHVLMVTLAFQGHINPMLKLAKHLSLSSKNLHFTLATTEQARDLLST-VEK---PRRPVDLVFFS-----DGLPKDDP 77 (456)
T ss_pred CCCEEEEeCCcccccHHHHHHHHHHHHhhcCCcEEEEEeccchhhhhcc-ccC---CCCceEEEECC-----CCCCCCcc
Confidence 3579999999999999999999999 5599999999999987654422 110 01124444432 35665432
Q ss_pred cccccchhhhHHHHHHHHH-HHHHhHHHHHHHhhhCCCCEEEecCCCccHHHHHHHhCCCCC
Q 039991 112 NLDAITNEVNKELIVKFFG-ATTKLQEPLEQLLRDHKPDCLVADIFFPWATDAAAKFGIPRL 172 (172)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~ll~~~~~d~VI~D~~~~~a~~vA~~lgiP~v 172 (172)
. . . . .+.. ....+.+.+++++++.++||||+|.++.|+.++|+++|||.+
T Consensus 78 ~----~-~---~---~~~~~~~~~~~~~l~~~l~~~~~~~vI~D~~~~w~~~vA~~lgIP~~ 128 (456)
T PLN02210 78 R----A-P---E---TLLKSLNKVGAKNLSKIIEEKRYSCIISSPFTPWVPAVAAAHNIPCA 128 (456)
T ss_pred c----C-H---H---HHHHHHHHhhhHHHHHHHhcCCCcEEEECCcchhHHHHHHHhCCCEE
Confidence 1 1 1 1 1222 223556778888887789999999999999999999999974
No 11
>PLN02555 limonoid glucosyltransferase
Probab=99.82 E-value=2e-19 Score=153.62 Aligned_cols=130 Identities=22% Similarity=0.456 Sum_probs=86.8
Q ss_pred CCCCCCcceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCChhhhhh--hh-hhh-hcCC-CCeEEEEeeCCCCC
Q 039991 29 MGSEIPQLHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPANTPYVSK--SV-ERA-NELG-IEMDVKTVKFPSVE 103 (172)
Q Consensus 29 M~~~~~~~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~~~--~~-~~~-~~~~-~~i~~~~l~~~~~~ 103 (172)
|++.....||+++|+|++||++||++||+.|+++|..||+++++.+..++.+ .+ .+. ...+ ..++|..+|
T Consensus 1 ~~~~~~~~HVv~~PfpaqGHi~Pml~lA~~La~~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~p----- 75 (480)
T PLN02555 1 MESESSLVHVMLVSFPGQGHVNPLLRLGKLLASKGLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFE----- 75 (480)
T ss_pred CCCCCCCCEEEEECCcccccHHHHHHHHHHHHhCCCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCC-----
Confidence 7766667899999999999999999999999999999999999977654432 11 000 0001 113443332
Q ss_pred CCCCCCCCcccccchhhhHHHHHHHHHHH-HHhHHHHHHHhhh----CC-CCEEEecCCCccHHHHHHHhCCCCC
Q 039991 104 AGLPDGCENLDAITNEVNKELIVKFFGAT-TKLQEPLEQLLRD----HK-PDCLVADIFFPWATDAAAKFGIPRL 172 (172)
Q Consensus 104 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~ll~~----~~-~d~VI~D~~~~~a~~vA~~lgiP~v 172 (172)
+++|++.+... +. ..+.... ..+.+.+++++++ .+ ++|||+|++++|+.++|+++|||.+
T Consensus 76 dglp~~~~~~~--------~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~pv~ciV~D~~~~wa~~vA~~~gIP~~ 141 (480)
T PLN02555 76 DGWAEDDPRRQ--------DL-DLYLPQLELVGKREIPNLVKRYAEQGRPVSCLINNPFIPWVCDVAEELGIPSA 141 (480)
T ss_pred CCCCCCccccc--------CH-HHHHHHHHHhhhHHHHHHHHHHhccCCCceEEEECCcchHHHHHHHHcCCCeE
Confidence 36665433111 11 1222222 2455666665543 23 4999999999999999999999975
No 12
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=99.82 E-value=2e-19 Score=153.46 Aligned_cols=123 Identities=19% Similarity=0.316 Sum_probs=88.6
Q ss_pred CcceEEEEcCCCccchHHHHHHHHHHH-HCCCEEEEEeCCCChhhhhhhhhhhhcCCCCeEEEEeeCCCCCCCCCCCCCc
Q 039991 34 PQLHVFFFPFMAHGHMIPIVDMAKLFV-TRGVKASVITTPANTPYVSKSVERANELGIEMDVKTVKFPSVEAGLPDGCEN 112 (172)
Q Consensus 34 ~~~~Ilv~p~p~~GH~~P~l~La~~La-~rGh~Vt~it~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~p~~~~~ 112 (172)
++.||+++|+|++||++||++||++|+ ++|++||+++++.+..++..... ..+.++++.+|.+.. +++|+...
T Consensus 4 ~~pHVvl~P~paqGHi~P~l~LAk~La~~~g~~vT~v~t~~n~~~~~~~~~----~~~~i~~~~lp~p~~-~glp~~~~- 77 (481)
T PLN02992 4 TKPHAAMFSSPGMGHVIPVIELGKRLSANHGFHVTVFVLETDAASAQSKFL----NSTGVDIVGLPSPDI-SGLVDPSA- 77 (481)
T ss_pred CCcEEEEeCCcccchHHHHHHHHHHHHhCCCcEEEEEeCCCchhhhhhccc----cCCCceEEECCCccc-cCCCCCCc-
Confidence 468999999999999999999999998 78999999999987544422111 112488888875432 34442111
Q ss_pred ccccchhhhHHHHHHHHHHHHHhHHHHHHHhhhC--CCCEEEecCCCccHHHHHHHhCCCCC
Q 039991 113 LDAITNEVNKELIVKFFGATTKLQEPLEQLLRDH--KPDCLVADIFFPWATDAAAKFGIPRL 172 (172)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~--~~d~VI~D~~~~~a~~vA~~lgiP~v 172 (172)
. ....+......+.+.+++++++. +++|||+|++++|+.++|+++|||+|
T Consensus 78 -~---------~~~~~~~~~~~~~~~~~~~l~~~~~~p~cvV~D~f~~Wa~dVA~elgIP~v 129 (481)
T PLN02992 78 -H---------VVTKIGVIMREAVPTLRSKIAEMHQKPTALIVDLFGTDALCLGGEFNMLTY 129 (481)
T ss_pred -c---------HHHHHHHHHHHhHHHHHHHHHhcCCCCeEEEECCcchhHHHHHHHcCCCEE
Confidence 0 01112223345667777777653 78999999999999999999999975
No 13
>PLN02562 UDP-glycosyltransferase
Probab=99.82 E-value=2.6e-19 Score=152.03 Aligned_cols=118 Identities=23% Similarity=0.490 Sum_probs=86.2
Q ss_pred cceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCChhhhhhhhhhhhcCCCCeEEEEeeCCCCCCCCCCCCCccc
Q 039991 35 QLHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPANTPYVSKSVERANELGIEMDVKTVKFPSVEAGLPDGCENLD 114 (172)
Q Consensus 35 ~~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~p~~~~~~~ 114 (172)
+.||+++|+|++||++||++||+.|+++|++||+++++.+..++.+.+.+ .++++++.+|. +++++.
T Consensus 6 ~~HVVlvPfPaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~~~~~~~~----~~~i~~v~lp~-----g~~~~~---- 72 (448)
T PLN02562 6 RPKIILVPYPAQGHVTPMLKLASAFLSRGFEPVVITPEFIHRRISATLDP----KLGITFMSISD-----GQDDDP---- 72 (448)
T ss_pred CcEEEEEcCccccCHHHHHHHHHHHHhCCCEEEEEeCcchhhhhhhccCC----CCCEEEEECCC-----CCCCCc----
Confidence 57999999999999999999999999999999999999876555432211 12488887752 333221
Q ss_pred ccchhhhHHHHHHHHHHHH-HhHHHHHHHhhhC----CCCEEEecCCCccHHHHHHHhCCCCC
Q 039991 115 AITNEVNKELIVKFFGATT-KLQEPLEQLLRDH----KPDCLVADIFFPWATDAAAKFGIPRL 172 (172)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~-~~~~~l~~ll~~~----~~d~VI~D~~~~~a~~vA~~lgiP~v 172 (172)
+. +.. .+..... .+.+.+++++++. +++|||+|.+++|+.++|+++|||+|
T Consensus 73 --~~----~~~-~l~~a~~~~~~~~l~~ll~~l~~~~pv~cvI~D~~~~w~~~vA~~~giP~~ 128 (448)
T PLN02562 73 --PR----DFF-SIENSMENTMPPQLERLLHKLDEDGEVACMVVDLLASWAIGVADRCGVPVA 128 (448)
T ss_pred --cc----cHH-HHHHHHHHhchHHHHHHHHHhcCCCCcEEEEECCccHhHHHHHHHhCCCEE
Confidence 10 111 2233333 4667777776653 35899999999999999999999975
No 14
>PLN02448 UDP-glycosyltransferase family protein
Probab=99.81 E-value=3.5e-19 Score=151.77 Aligned_cols=121 Identities=22% Similarity=0.401 Sum_probs=88.3
Q ss_pred CCcceEEEEcCCCccchHHHHHHHHHHHHC--CCEEEEEeCCCChhhhhhhhhhhhcCCCCeEEEEeeCCCCCCCCCCCC
Q 039991 33 IPQLHVFFFPFMAHGHMIPIVDMAKLFVTR--GVKASVITTPANTPYVSKSVERANELGIEMDVKTVKFPSVEAGLPDGC 110 (172)
Q Consensus 33 ~~~~~Ilv~p~p~~GH~~P~l~La~~La~r--Gh~Vt~it~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~p~~~ 110 (172)
.+..||+++|+|++||++||++||++|++| ||+||+++++.+...+.... ...+++|+.+|. ++|++.
T Consensus 8 ~~~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~-----~~~gi~fv~lp~-----~~p~~~ 77 (459)
T PLN02448 8 TTSCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDP-----KPDNIRFATIPN-----VIPSEL 77 (459)
T ss_pred CCCcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccC-----CCCCEEEEECCC-----CCCCcc
Confidence 456899999999999999999999999999 99999999998765544321 112588888762 344432
Q ss_pred CcccccchhhhHHHHHHHHH-HHHHhHHHHHHHhhhC--CCCEEEecCCCccHHHHHHHhCCCCC
Q 039991 111 ENLDAITNEVNKELIVKFFG-ATTKLQEPLEQLLRDH--KPDCLVADIFFPWATDAAAKFGIPRL 172 (172)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~ll~~~--~~d~VI~D~~~~~a~~vA~~lgiP~v 172 (172)
+... +.. .+.. ....+.+.+++++++. ++||||+|.++.|+..+|+++|||+|
T Consensus 78 ~~~~--------~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~VI~D~~~~wa~~vA~~lgIP~v 133 (459)
T PLN02448 78 VRAA--------DFP-GFLEAVMTKMEAPFEQLLDRLEPPVTAIVADTYLFWAVGVGNRRNIPVA 133 (459)
T ss_pred cccc--------CHH-HHHHHHHHHhHHHHHHHHHhcCCCcEEEEECCccHHHHHHHHHhCCCeE
Confidence 2111 111 1222 2234666777777654 68999999999999999999999975
No 15
>PLN00164 glucosyltransferase; Provisional
Probab=99.80 E-value=9.2e-19 Score=149.79 Aligned_cols=123 Identities=18% Similarity=0.295 Sum_probs=85.8
Q ss_pred cceEEEEcCCCccchHHHHHHHHHHHHCC----CEEEEEeCCCChh----hhhhhhhhhhcCCCCeEEEEeeCCCCCCCC
Q 039991 35 QLHVFFFPFMAHGHMIPIVDMAKLFVTRG----VKASVITTPANTP----YVSKSVERANELGIEMDVKTVKFPSVEAGL 106 (172)
Q Consensus 35 ~~~Ilv~p~p~~GH~~P~l~La~~La~rG----h~Vt~it~~~~~~----~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~ 106 (172)
+.||+++|+|++||++||++||++|++|| +.||+++++.+.. ++.+.+.+....+..++++.+|.. ..
T Consensus 3 ~~HVVlvPfpaqGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~----~~ 78 (480)
T PLN00164 3 APTVVLLPVWGSGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPESASEVAAHVRREAASGLDIRFHHLPAV----EP 78 (480)
T ss_pred CCEEEEeCCcchhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccchhHHHHHHHhhcccCCCCEEEEECCCC----CC
Confidence 57999999999999999999999999997 8999999886532 233222211001124888888632 23
Q ss_pred CCCCCcccccchhhhHHHHHHHHHHHHHhHHHHHHHhhhC--CCCEEEecCCCccHHHHHHHhCCCCC
Q 039991 107 PDGCENLDAITNEVNKELIVKFFGATTKLQEPLEQLLRDH--KPDCLVADIFFPWATDAAAKFGIPRL 172 (172)
Q Consensus 107 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~--~~d~VI~D~~~~~a~~vA~~lgiP~v 172 (172)
|++.+. . . ..+......+.+.+++++++. +++|||+|++++|+.++|+++|||++
T Consensus 79 p~~~e~------~---~--~~~~~~~~~~~~~l~~~L~~l~~pv~cIV~D~f~~Wa~dVA~elgIP~v 135 (480)
T PLN00164 79 PTDAAG------V---E--EFISRYIQLHAPHVRAAIAGLSCPVAALVVDFFCTPLLDVARELAVPAY 135 (480)
T ss_pred CCcccc------H---H--HHHHHHHHhhhHHHHHHHHhcCCCceEEEECCcchhHHHHHHHhCCCEE
Confidence 332211 1 1 112223346677787877764 56999999999999999999999975
No 16
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=99.79 E-value=1e-18 Score=148.46 Aligned_cols=123 Identities=19% Similarity=0.359 Sum_probs=83.4
Q ss_pred cceEEEEcCCCccchHHHHHHHHHHHH-CCCEEEEEeCCCChhhhhhhhhhhhcCCCCeEEEEeeCCCCCCCCCCCCCcc
Q 039991 35 QLHVFFFPFMAHGHMIPIVDMAKLFVT-RGVKASVITTPANTPYVSKSVERANELGIEMDVKTVKFPSVEAGLPDGCENL 113 (172)
Q Consensus 35 ~~~Ilv~p~p~~GH~~P~l~La~~La~-rGh~Vt~it~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~p~~~~~~ 113 (172)
+.||+++|+|++||++||++||++|++ +|+.||+++++.+.. +....... ..++++++.++ +++|++.+..
T Consensus 3 ~~hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~--~~~~~~~~-~~~~i~~~~i~-----dglp~g~~~~ 74 (455)
T PLN02152 3 PPHFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIH--RSMIPNHN-NVENLSFLTFS-----DGFDDGVISN 74 (455)
T ss_pred CcEEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhh--hhhhccCC-CCCCEEEEEcC-----CCCCCccccc
Confidence 469999999999999999999999996 799999999986421 11111100 11258888875 3666653221
Q ss_pred cccchhhhHHHHHHHHHHHHHhHHHHHHHhhh-----CCCCEEEecCCCccHHHHHHHhCCCCC
Q 039991 114 DAITNEVNKELIVKFFGATTKLQEPLEQLLRD-----HKPDCLVADIFFPWATDAAAKFGIPRL 172 (172)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~-----~~~d~VI~D~~~~~a~~vA~~lgiP~v 172 (172)
. . .....+......+.+.+++++++ .+++|||+|.+++|+.++|+++|||++
T Consensus 75 ~--~-----~~~~~~~~~~~~~~~~l~~~l~~l~~~~~pv~ciV~D~~~~wa~dvA~~lgIP~~ 131 (455)
T PLN02152 75 T--D-----DVQNRLVNFERNGDKALSDFIEANLNGDSPVTCLIYTILPNWAPKVARRFHLPSV 131 (455)
T ss_pred c--c-----cHHHHHHHHHHhccHHHHHHHHHhhccCCCceEEEECCccHhHHHHHHHhCCCEE
Confidence 1 0 11112222333455566665543 245999999999999999999999974
No 17
>PLN03015 UDP-glucosyl transferase
Probab=99.78 E-value=3.3e-18 Score=145.54 Aligned_cols=123 Identities=14% Similarity=0.303 Sum_probs=87.3
Q ss_pred cceEEEEcCCCccchHHHHHHHHHHHHC-CCEEEEEeCCCChhhh--hhhhhhhhcCCCCeEEEEeeCCCCCCCC-CCCC
Q 039991 35 QLHVFFFPFMAHGHMIPIVDMAKLFVTR-GVKASVITTPANTPYV--SKSVERANELGIEMDVKTVKFPSVEAGL-PDGC 110 (172)
Q Consensus 35 ~~~Ilv~p~p~~GH~~P~l~La~~La~r-Gh~Vt~it~~~~~~~~--~~~~~~~~~~~~~i~~~~l~~~~~~~~~-p~~~ 110 (172)
++||+++|+|++||++||++||+.|+++ |..||++++..+.... ...+.+.. ..+.++++.+|.+.. +++ +.+
T Consensus 3 ~pHvvl~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~~~~~~-~~~~i~~~~lp~~~~-~~l~~~~- 79 (470)
T PLN03015 3 QPHALLVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEAIHAAA-ARTTCQITEIPSVDV-DNLVEPD- 79 (470)
T ss_pred CcEEEEECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhcccccccccc-CCCceEEEECCCCcc-ccCCCCC-
Confidence 4699999999999999999999999987 9999999988764333 11111100 112488888875422 233 111
Q ss_pred CcccccchhhhHHHHHHHHHHHHHhHHHHHHHhhhC--CCCEEEecCCCccHHHHHHHhCCCC
Q 039991 111 ENLDAITNEVNKELIVKFFGATTKLQEPLEQLLRDH--KPDCLVADIFFPWATDAAAKFGIPR 171 (172)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~--~~d~VI~D~~~~~a~~vA~~lgiP~ 171 (172)
. +....+......+.+.+++++++. +++|||+|++++|+.++|+++|||+
T Consensus 80 -----~------~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ciV~D~f~~w~~~vA~~lgIP~ 131 (470)
T PLN03015 80 -----A------TIFTKMVVKMRAMKPAVRDAVKSMKRKPTVMIVDFFGTALMSIADDVGVTA 131 (470)
T ss_pred -----c------cHHHHHHHHHHhchHHHHHHHHhcCCCCeEEEEcCCcHHHHHHHHHcCCCE
Confidence 0 111234444456778888888765 6899999999999999999999993
No 18
>PLN03004 UDP-glycosyltransferase
Probab=99.77 E-value=5.8e-18 Score=143.69 Aligned_cols=127 Identities=10% Similarity=0.205 Sum_probs=78.8
Q ss_pred cceEEEEcCCCccchHHHHHHHHHHHHCC--CEEEE--EeCCCChhhhhhhhhhhhcCCCCeEEEEeeCCCCCCCCCCCC
Q 039991 35 QLHVFFFPFMAHGHMIPIVDMAKLFVTRG--VKASV--ITTPANTPYVSKSVERANELGIEMDVKTVKFPSVEAGLPDGC 110 (172)
Q Consensus 35 ~~~Ilv~p~p~~GH~~P~l~La~~La~rG--h~Vt~--it~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~p~~~ 110 (172)
..||+++|+|++||++||++||++|+++| +.||+ +++..+...+.+.++......++++++.+|... +.+++.
T Consensus 3 ~~Hvvl~P~p~qGHi~P~l~LA~~La~~g~~~~vti~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~---~~~~~~ 79 (451)
T PLN03004 3 EEAIVLYPAPPIGHLVSMVELGKTILSKNPSLSIHIILVPPPYQPESTATYISSVSSSFPSITFHHLPAVT---PYSSSS 79 (451)
T ss_pred CcEEEEeCCcccchHHHHHHHHHHHHhCCCceEEEEEEecCcchhhhhhhhhccccCCCCCeEEEEcCCCC---CCCCcc
Confidence 47999999999999999999999999998 45555 555443322222111110011358888887431 112211
Q ss_pred CcccccchhhhHHHHHHHHHHHHHhHHHHHHHhhhC----CCCEEEecCCCccHHHHHHHhCCCCC
Q 039991 111 ENLDAITNEVNKELIVKFFGATTKLQEPLEQLLRDH----KPDCLVADIFFPWATDAAAKFGIPRL 172 (172)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~----~~d~VI~D~~~~~a~~vA~~lgiP~v 172 (172)
.. . . .....+......+.+.+++++++. +++|||+|++++|+.++|+++|||.+
T Consensus 80 ~~--~-~-----~~~~~~~~~~~~~~~~~~~~l~~l~~~~pv~cII~D~~~~Wa~~vA~~lgIP~v 137 (451)
T PLN03004 80 TS--R-H-----HHESLLLEILCFSNPSVHRTLFSLSRNFNVRAMIIDFFCTAVLDITADFTFPVY 137 (451)
T ss_pred cc--c-c-----CHHHHHHHHHHhhhHHHHHHHHhcCCCCCceEEEECCcchhHHHHHHHhCCCEE
Confidence 11 0 0 111122222234555555555542 46999999999999999999999975
No 19
>PLN02167 UDP-glycosyltransferase family protein
Probab=99.76 E-value=1.4e-17 Score=142.47 Aligned_cols=131 Identities=15% Similarity=0.214 Sum_probs=79.2
Q ss_pred cceEEEEcCCCccchHHHHHHHHHHHHCCC---EEEEEeCCCChh-hhhhhhhhhhcCCCCeEEEEeeCCCCCCCCCCCC
Q 039991 35 QLHVFFFPFMAHGHMIPIVDMAKLFVTRGV---KASVITTPANTP-YVSKSVERANELGIEMDVKTVKFPSVEAGLPDGC 110 (172)
Q Consensus 35 ~~~Ilv~p~p~~GH~~P~l~La~~La~rGh---~Vt~it~~~~~~-~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~p~~~ 110 (172)
..||+++|+|++||++||++||++|+++|. .||++++..+.. ..+..+.+.....+.++|+.+|.+. + |.+.
T Consensus 3 ~~hVv~~PfpaqGHi~P~l~LAk~La~~G~~~t~vt~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~---~-p~~~ 78 (475)
T PLN02167 3 EAELIFVPFPSTGHILVTIEFAKRLINLDRRIHTITILYWSLPFAPQADAFLKSLIASEPRIRLVTLPEVQ---D-PPPM 78 (475)
T ss_pred ccEEEEeCChhhhhHHHHHHHHHHHHhCCCCeEEEEEEECCCCcchhhhHHHhhcccCCCCeEEEECCCCC---C-Cccc
Confidence 579999999999999999999999999993 577777654322 1111121110012358999887431 1 2211
Q ss_pred CcccccchhhhHHHHHHHHHHHHHhHHHHHHHhhh-----C-CCCEEEecCCCccHHHHHHHhCCCCC
Q 039991 111 ENLDAITNEVNKELIVKFFGATTKLQEPLEQLLRD-----H-KPDCLVADIFFPWATDAAAKFGIPRL 172 (172)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~-----~-~~d~VI~D~~~~~a~~vA~~lgiP~v 172 (172)
+........ .....+......+.+.+++++.+ . +++|||+|+|++|+.++|+++|||++
T Consensus 79 ~~~~~~~~~---~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v 143 (475)
T PLN02167 79 ELFVKASEA---YILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSY 143 (475)
T ss_pred cccccchHH---HHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEE
Confidence 100000000 11111112223444555555432 1 45999999999999999999999975
No 20
>PLN02207 UDP-glycosyltransferase
Probab=99.76 E-value=1.3e-17 Score=141.98 Aligned_cols=129 Identities=13% Similarity=0.219 Sum_probs=83.2
Q ss_pred cceEEEEcCCCccchHHHHHHHHHHHHCC--CEEEEEeCCCCh-hhhhhhhhhhhcCCCCeEEEEeeCCCCCCCCCCCCC
Q 039991 35 QLHVFFFPFMAHGHMIPIVDMAKLFVTRG--VKASVITTPANT-PYVSKSVERANELGIEMDVKTVKFPSVEAGLPDGCE 111 (172)
Q Consensus 35 ~~~Ilv~p~p~~GH~~P~l~La~~La~rG--h~Vt~it~~~~~-~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~p~~~~ 111 (172)
+.|++++|+|++||++||++||++|+++| ..||+++++.+. ..+.+.+++.....+.++|+.+|..+ ..++. .
T Consensus 3 ~~hvv~~P~p~qGHi~P~l~lA~~La~~gg~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~---~~~~~-~ 78 (468)
T PLN02207 3 NAELIFIPTPTVGHLVPFLEFARRLIEQDDRIRITILLMKLQGQSHLDTYVKSIASSQPFVRFIDVPELE---EKPTL-G 78 (468)
T ss_pred CcEEEEeCCcchhhHHHHHHHHHHHHhCCCCeEEEEEEcCCCcchhhHHhhhhccCCCCCeEEEEeCCCC---CCCcc-c
Confidence 47999999999999999999999999998 999999999764 22332222111011358999887321 11210 0
Q ss_pred cccccchhhhHHHHHHHHH-HHHHhHHHHHHHhhhC----C-CCEEEecCCCccHHHHHHHhCCCCC
Q 039991 112 NLDAITNEVNKELIVKFFG-ATTKLQEPLEQLLRDH----K-PDCLVADIFFPWATDAAAKFGIPRL 172 (172)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~ll~~~----~-~d~VI~D~~~~~a~~vA~~lgiP~v 172 (172)
...... ..+..... ....+.+.+++++++. + ++|||+|.+++|+.++|+++|||.+
T Consensus 79 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pv~cvV~D~~~~w~~~vA~~~gip~~ 140 (468)
T PLN02207 79 GTQSVE-----AYVYDVIEKNIPLVRNIVMDILSSLALDGVKVKGFVADFFCLPMIDVAKDVSLPFY 140 (468)
T ss_pred cccCHH-----HHHHHHHHhcchhHHHHHHHHHHHhccCCCCeEEEEECCcchHHHHHHHHhCCCEE
Confidence 101010 11111111 1123355566665532 3 4899999999999999999999975
No 21
>PLN02554 UDP-glycosyltransferase family protein
Probab=99.75 E-value=1.8e-17 Score=142.03 Aligned_cols=124 Identities=21% Similarity=0.342 Sum_probs=82.1
Q ss_pred cceEEEEcCCCccchHHHHHHHHHHHHCC--CEEEEEeCCCChhhh---hhhhhhhhc-CCCCeEEEEeeCCCCCCCCCC
Q 039991 35 QLHVFFFPFMAHGHMIPIVDMAKLFVTRG--VKASVITTPANTPYV---SKSVERANE-LGIEMDVKTVKFPSVEAGLPD 108 (172)
Q Consensus 35 ~~~Ilv~p~p~~GH~~P~l~La~~La~rG--h~Vt~it~~~~~~~~---~~~~~~~~~-~~~~i~~~~l~~~~~~~~~p~ 108 (172)
+.||+++|+|++||++||++||++|+++| ..||+++++.+..++ .+.+.+... ..++++++.+|.+ .+.
T Consensus 2 ~~hvvl~P~paqGHi~P~l~LAk~La~~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~-----~~~ 76 (481)
T PLN02554 2 KIELVFIPSPGIGHLRPTVELAKLLVDSDDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAG-----DQP 76 (481)
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHhCCCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCC-----CCC
Confidence 47999999999999999999999999998 899999998775422 111211100 1225888888633 111
Q ss_pred CCCcccccchhhhHHHHHHHHHHHHHhHHHHHHHhhh-----CC-CCEEEecCCCccHHHHHHHhCCCCC
Q 039991 109 GCENLDAITNEVNKELIVKFFGATTKLQEPLEQLLRD-----HK-PDCLVADIFFPWATDAAAKFGIPRL 172 (172)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~-----~~-~d~VI~D~~~~~a~~vA~~lgiP~v 172 (172)
.... . .....+......+.+.+++++.+ .+ ++|||+|++++|+.++|+++|||++
T Consensus 77 ~~~~----~-----~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~ 137 (481)
T PLN02554 77 TTED----P-----TFQSYIDNQKPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTSMIDVANEFGVPSY 137 (481)
T ss_pred cccc----h-----HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEECCcchhHHHHHHHhCCCEE
Confidence 1000 0 11111112223455566666533 13 4899999999999999999999975
No 22
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=99.64 E-value=9e-16 Score=127.90 Aligned_cols=128 Identities=20% Similarity=0.201 Sum_probs=80.0
Q ss_pred ceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCChhhhhhhhhhhhcCCCCeEEEEeeCCCCCCCCC-CCCCccc
Q 039991 36 LHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPANTPYVSKSVERANELGIEMDVKTVKFPSVEAGLP-DGCENLD 114 (172)
Q Consensus 36 ~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~p-~~~~~~~ 114 (172)
+||+++++|+.||++|+++||++|++|||+|++++++.....+.+ . ++++..++......... .......
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~rGh~V~~~t~~~~~~~v~~-------~--G~~~~~~~~~~~~~~~~~~~~~~~~ 71 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAGHEVRVATPPEFADLVEA-------A--GLEFVPVGGDPDELLASPERNAGLL 71 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHCCCeEEEeeCHhHHHHHHH-------c--CCceeeCCCCHHHHHhhhhhccccc
Confidence 589999999999999999999999999999999999965433332 2 37777664211000000 0000000
Q ss_pred ccchhhhHHHHHHHHHHHHHhHHHHHHHhhhCCCCEEEecCCCccHHHHHHHhCCCCC
Q 039991 115 AITNEVNKELIVKFFGATTKLQEPLEQLLRDHKPDCLVADIFFPWATDAAAKFGIPRL 172 (172)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~d~VI~D~~~~~a~~vA~~lgiP~v 172 (172)
.............+......+...+.+.+++.++||||+|.++.++..+|+++|||++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~~~~~~~A~~~giP~v 129 (401)
T cd03784 72 LLGPGLLLGALRLLRREAEAMLDDLVAAARDWGPDLVVADPLAFAGAVAAEALGIPAV 129 (401)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCEEEeCcHHHHHHHHHHHhCCCeE
Confidence 0000000011112222333344444455566799999999999999999999999975
No 23
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=99.58 E-value=1.3e-14 Score=120.85 Aligned_cols=117 Identities=22% Similarity=0.297 Sum_probs=76.7
Q ss_pred EcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCChhhhhhhhhhhhcCCCCeEEEEeeCCCCCCCCCCCCCcccccchhh
Q 039991 41 FPFMAHGHMIPIVDMAKLFVTRGVKASVITTPANTPYVSKSVERANELGIEMDVKTVKFPSVEAGLPDGCENLDAITNEV 120 (172)
Q Consensus 41 ~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~p~~~~~~~~~~~~~ 120 (172)
+.+|+.||++|+++||++|+++||+|++++++.+.+.+.+ . ++.++.++......+.++. ... ...
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~-------~--G~~~~~~~~~~~~~~~~~~--~~~--~~~- 66 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVARGHRVTYATTEEFAERVEA-------A--GAEFVLYGSALPPPDNPPE--NTE--EEP- 66 (392)
T ss_pred CCCCccccccccHHHHHHHHhCCCeEEEEeCHHHHHHHHH-------c--CCEEEecCCcCcccccccc--ccC--cch-
Confidence 3578999999999999999999999999999866544433 2 3777776532110001110 000 000
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHhhhCCCCEEEecCCCccHHHHHHHhCCCCC
Q 039991 121 NKELIVKFFGATTKLQEPLEQLLRDHKPDCLVADIFFPWATDAAAKFGIPRL 172 (172)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~d~VI~D~~~~~a~~vA~~lgiP~v 172 (172)
......+........+.+.+++++.+|||||+|.++.|+..+|+++|||+|
T Consensus 67 -~~~~~~~~~~~~~~~~~l~~~~~~~~pDlVi~d~~~~~~~~~A~~~giP~v 117 (392)
T TIGR01426 67 -IDIIEKLLDEAEDVLPQLEEAYKGDRPDLIVYDIASWTGRLLARKWDVPVI 117 (392)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEECCccHHHHHHHHHhCCCEE
Confidence 122222222222333445566677799999999999999999999999985
No 24
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.35 E-value=9.2e-13 Score=94.46 Aligned_cols=114 Identities=18% Similarity=0.242 Sum_probs=69.3
Q ss_pred EEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCChhhhhhhhhhhhcCCCCeEEEEeeCCCCCCCCCCCCCcccccc
Q 039991 38 VFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPANTPYVSKSVERANELGIEMDVKTVKFPSVEAGLPDGCENLDAIT 117 (172)
Q Consensus 38 Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~p~~~~~~~~~~ 117 (172)
|++...++.||++|++.|+++|.+|||+|++.+++...+.+.+ . ++.|+.++.. ..++.. ..
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~~~~~v~~-------~--Gl~~~~~~~~---~~~~~~------~~ 62 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHEVRLATPPDFRERVEA-------A--GLEFVPIPGD---SRLPRS------LE 62 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGGGHHHHHH-------T--T-EEEESSSC---GGGGHH------HH
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCeEEEeecccceecccc-------c--CceEEEecCC---cCcCcc------cc
Confidence 6889999999999999999999999999999999876554432 2 4888887521 001100 00
Q ss_pred hhhhHHHHHHHH---HHHHHhHHHHHHHhhh--------CCCCEEEecCCCccHHHHHHHhCCCCC
Q 039991 118 NEVNKELIVKFF---GATTKLQEPLEQLLRD--------HKPDCLVADIFFPWATDAAAKFGIPRL 172 (172)
Q Consensus 118 ~~~~~~~~~~~~---~~~~~~~~~l~~ll~~--------~~~d~VI~D~~~~~a~~vA~~lgiP~v 172 (172)
.. ....... .........+++...+ ...|+++.+.....+..+||++|||++
T Consensus 63 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~ 125 (139)
T PF03033_consen 63 PL---ANLRRLARLIRGLEEAMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGV 125 (139)
T ss_dssp HH---HHHHCHHHHHHHHHHHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EE
T ss_pred hh---hhhhhHHHHhhhhhHHHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHH
Confidence 00 1111111 1112222233222111 257888889888888999999999974
No 25
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=99.03 E-value=9.8e-10 Score=95.00 Aligned_cols=128 Identities=14% Similarity=0.192 Sum_probs=73.4
Q ss_pred ceEE-EEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCChhhhhhhhhhhhcCCCCeEEEEeeCCCCCCCCCCCCCccc
Q 039991 36 LHVF-FFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPANTPYVSKSVERANELGIEMDVKTVKFPSVEAGLPDGCENLD 114 (172)
Q Consensus 36 ~~Il-v~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~p~~~~~~~ 114 (172)
.+|+ ++|.++.||+.-+.+|+++|++|||+||++++.... ..... ...+++...++... +.+........
T Consensus 21 ~kIl~~~P~~~~SH~~~~~~l~~~La~rGH~VTvi~p~~~~-~~~~~------~~~~~~~i~~~~~~--~~~~~~~~~~~ 91 (507)
T PHA03392 21 ARILAVFPTPAYSHHSVFKVYVEALAERGHNVTVIKPTLRV-YYASH------LCGNITEIDASLSV--EYFKKLVKSSA 91 (507)
T ss_pred ccEEEEcCCCCCcHHHHHHHHHHHHHHcCCeEEEEeccccc-ccccC------CCCCEEEEEcCCCh--HHHHHHHhhhh
Confidence 4576 449899999999999999999999999999876421 00000 01245544443210 01110000000
Q ss_pred ccch----hhhHHHHH----HHHHHHH-H-hHHHHHHHhh--hCCCCEEEecCCCccHHHHHHHh-CCCCC
Q 039991 115 AITN----EVNKELIV----KFFGATT-K-LQEPLEQLLR--DHKPDCLVADIFFPWATDAAAKF-GIPRL 172 (172)
Q Consensus 115 ~~~~----~~~~~~~~----~~~~~~~-~-~~~~l~~ll~--~~~~d~VI~D~~~~~a~~vA~~l-giP~v 172 (172)
.... ........ .+.+.++ . ..+.+.++++ +.+||++|+|.+..|+..+|+++ |+|.|
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~kFDlvi~e~~~~c~~~la~~~~~~p~i 162 (507)
T PHA03392 92 VFRKRGVVADSSTVTADNYMGLVRMISDQFDLPNVKNLIANKNNKFDLLVTEAFLDYPLVFSHLFGDAPVI 162 (507)
T ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhcCCCceeEEEecccchhHHHHHHHhCCCCEE
Confidence 0000 00000001 1111122 1 2355667776 56899999999999999999999 99964
No 26
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=98.90 E-value=1.1e-10 Score=100.22 Aligned_cols=128 Identities=21% Similarity=0.305 Sum_probs=56.4
Q ss_pred eEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCChhhhhhhhhhhhcCCCCeEEEEeeCCCCCCCCCCCCCcc-cc
Q 039991 37 HVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPANTPYVSKSVERANELGIEMDVKTVKFPSVEAGLPDGCENL-DA 115 (172)
Q Consensus 37 ~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~p~~~~~~-~~ 115 (172)
+|+++|. +.||+++|..|+++|++|||+||++++.... .+... ...++++..++.....+......... ..
T Consensus 2 kvLv~p~-~~SH~~~~~~l~~~L~~rGH~VTvl~~~~~~-~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (500)
T PF00201_consen 2 KVLVFPM-AYSHFIFMRPLAEELAERGHNVTVLTPSPSS-SLNPS------KPSNIRFETYPDPYPEEEFEEIFPEFISK 73 (500)
T ss_dssp -----------SHHHHHHHHHHHHHH-TTSEEEHHHHHH-T------------S-CCEEEE-----TT------TTHHHH
T ss_pred EEEEeCC-CcCHHHHHHHHHHHHHhcCCceEEEEeeccc-ccccc------cccceeeEEEcCCcchHHHhhhhHHHHHH
Confidence 6888885 7899999999999999999999999976321 11111 12246666665321111111111100 00
Q ss_pred cch-hhhHHHHHHHHHH--------HHHhH-----HHHHHHhhhCCCCEEEecCCCccHHHHHHHhCCCCC
Q 039991 116 ITN-EVNKELIVKFFGA--------TTKLQ-----EPLEQLLRDHKPDCLVADIFFPWATDAAAKFGIPRL 172 (172)
Q Consensus 116 ~~~-~~~~~~~~~~~~~--------~~~~~-----~~l~~ll~~~~~d~VI~D~~~~~a~~vA~~lgiP~v 172 (172)
... ......+...... ...|. +.+.+.+++.++|++|+|.+..|+..+|+.+|+|.+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~~~fDlvI~d~f~~c~~~la~~l~iP~i 144 (500)
T PF00201_consen 74 FFSESSFANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKSEKFDLVISDAFDPCGLALAHYLGIPVI 144 (500)
T ss_dssp HHHHHCCHHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHHHHHCT-EEEEEESSHHHHHHHHHHTHH
T ss_pred HhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccccceEeeccchhHHHHHHhcCCeE
Confidence 000 0000001111110 01121 112223444479999999999999999999999963
No 27
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=98.90 E-value=2e-09 Score=92.13 Aligned_cols=41 Identities=29% Similarity=0.584 Sum_probs=38.0
Q ss_pred cceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCCh
Q 039991 35 QLHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPANT 75 (172)
Q Consensus 35 ~~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~ 75 (172)
..|++++++|++||++|++.||++|+++||+||++++....
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~~gh~vt~~~~~~~~ 45 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAERGHNVTVVTPSFNA 45 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHHcCCceEEEEeechh
Confidence 47889999999999999999999999999999999998653
No 28
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=98.79 E-value=1.3e-08 Score=85.88 Aligned_cols=120 Identities=24% Similarity=0.354 Sum_probs=71.1
Q ss_pred cceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCChhhhhhhhhhhhcCCCCeEEEEeeCCCCCCCCCCCCCccc
Q 039991 35 QLHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPANTPYVSKSVERANELGIEMDVKTVKFPSVEAGLPDGCENLD 114 (172)
Q Consensus 35 ~~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~p~~~~~~~ 114 (172)
+++|+++..|..||++|.+.||++|.++||+|++++++.+.+.+.+. + +.|..++.........++.. +
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~~gheV~~~~~~~~~~~ve~a-------g--~~f~~~~~~~~~~~~~~~~~--~ 69 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRRRGHEVVFASTGKFKEFVEAA-------G--LAFVAYPIRDSELATEDGKF--A 69 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHhcCCeEEEEeCHHHHHHHHHh-------C--cceeeccccCChhhhhhhhh--h
Confidence 47899999999999999999999999999999999999765544432 3 56666653210000111100 0
Q ss_pred ccchhhhHHHHHHHHHHHHHhHHHHHHHhhhCCCCEEEecCCCccHHHHHHHhCCCCC
Q 039991 115 AITNEVNKELIVKFFGATTKLQEPLEQLLRDHKPDCLVADIFFPWATDAAAKFGIPRL 172 (172)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~d~VI~D~~~~~a~~vA~~lgiP~v 172 (172)
.. ..+.............+.+++.+..+|.++.|.-...+ .+++..++|++
T Consensus 70 ~~------~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~-~~~~~~~~~~~ 120 (406)
T COG1819 70 GV------KSFRRLLQQFKKLIRELLELLRELEPDLVVDDARLSLG-LAARLLGIPVV 120 (406)
T ss_pred cc------chhHHHhhhhhhhhHHHHHHHHhcchhhhhcchhhhhh-hhhhhcccchh
Confidence 00 00110111112333344456666778877777554434 66666676653
No 29
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=98.67 E-value=3.1e-07 Score=74.21 Aligned_cols=117 Identities=21% Similarity=0.374 Sum_probs=65.2
Q ss_pred ceEEEEcCC-CccchHHHHHHHHHHHHCCCEEEEEeCCCChhhhhhhhhhhhcCCCCeEEEEeeCCCCCCCCCCCCCccc
Q 039991 36 LHVFFFPFM-AHGHMIPIVDMAKLFVTRGVKASVITTPANTPYVSKSVERANELGIEMDVKTVKFPSVEAGLPDGCENLD 114 (172)
Q Consensus 36 ~~Ilv~p~p-~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~p~~~~~~~ 114 (172)
+||++.... |.||+.-.+.|+++| |||+|++++.......+.. .+....++.. .........+
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L--rg~~v~~~~~~~~~~~~~~----------~~~~~~~~~~----~~~~~~~~~~ 64 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL--RGHEVTFITSGPAPEFLKP----------RFPVREIPGL----GPIQENGRLD 64 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH--ccCceEEEEcCCcHHHhcc----------ccCEEEccCc----eEeccCCccc
Confidence 466655444 779999999999999 6999999998854322211 1333434311 1111000111
Q ss_pred ccchhhhHHHHHHHHHHHHHhHHHHHHHhhhCCCCEEEecCCCccHHHHHHHhCCCCC
Q 039991 115 AITNEVNKELIVKFFGATTKLQEPLEQLLRDHKPDCLVADIFFPWATDAAAKFGIPRL 172 (172)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~d~VI~D~~~~~a~~vA~~lgiP~v 172 (172)
..... .....+............+++++.+||+||+|. .+.+...|+..|+|++
T Consensus 65 ~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~pDlVIsD~-~~~~~~aa~~~giP~i 118 (318)
T PF13528_consen 65 RWKTV---RNNIRWLARLARRIRREIRWLREFRPDLVISDF-YPLAALAARRAGIPVI 118 (318)
T ss_pred hHHHH---HHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEcC-hHHHHHHHHhcCCCEE
Confidence 00000 000011111122333344567777999999995 4446688899999975
No 30
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=98.37 E-value=2.7e-06 Score=69.37 Aligned_cols=111 Identities=19% Similarity=0.227 Sum_probs=63.8
Q ss_pred EE-EEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCChhhhhhhhhhhhcCCCCeE-EEEeeCCCCCCCCCCCCCcccc
Q 039991 38 VF-FFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPANTPYVSKSVERANELGIEMD-VKTVKFPSVEAGLPDGCENLDA 115 (172)
Q Consensus 38 Il-v~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~~~~~~~~~~~~~~i~-~~~l~~~~~~~~~p~~~~~~~~ 115 (172)
|+ .+...|.||+.|.++|+++|.+ ||+|+++++......++.. .+. +...|.... ..+.+.
T Consensus 2 il~~~~g~G~GH~~r~~ala~~L~~-g~ev~~~~~~~~~~~~~~~---------~~~~~~~~p~~~~--~~~~~~----- 64 (321)
T TIGR00661 2 ILYSVCGEGFGHTTRSVAIGEALKN-DYEVSYIASGRSKNYISKY---------GFKVFETFPGIKL--KGEDGK----- 64 (321)
T ss_pred EEEEEeccCccHHHHHHHHHHHHhC-CCeEEEEEcCCHHHhhhhh---------cCcceeccCCceE--eecCCc-----
Confidence 44 3556677999999999999999 9999999866522111111 122 222221000 001110
Q ss_pred cchhhhHHHHHHHHH--HH-HHhHHHHHHHhhhCCCCEEEecCCCccHHHHHHHhCCCCC
Q 039991 116 ITNEVNKELIVKFFG--AT-TKLQEPLEQLLRDHKPDCLVADIFFPWATDAAAKFGIPRL 172 (172)
Q Consensus 116 ~~~~~~~~~~~~~~~--~~-~~~~~~l~~ll~~~~~d~VI~D~~~~~a~~vA~~lgiP~v 172 (172)
. +....+.. .. ........+++++.+||+||+| +...+..+|..+|||++
T Consensus 65 ~------~~~~~l~~~~~~~~~~~~~~~~~l~~~~pDlVi~d-~~~~~~~aA~~~~iP~i 117 (321)
T TIGR00661 65 V------NIVKTLRNKEYSPKKAIRREINIIREYNPDLIISD-FEYSTVVAAKLLKIPVI 117 (321)
T ss_pred C------cHHHHHHhhccccHHHHHHHHHHHHhcCCCEEEEC-CchHHHHHHHhcCCCEE
Confidence 0 01111110 00 1112233457788899999999 66667889999999975
No 31
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=98.29 E-value=1.7e-05 Score=65.71 Aligned_cols=115 Identities=15% Similarity=0.065 Sum_probs=68.5
Q ss_pred ceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCChhhhhhhhhhhhcCCCCeEEEEeeCCCCCCCCCCCCCcccc
Q 039991 36 LHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPANTPYVSKSVERANELGIEMDVKTVKFPSVEAGLPDGCENLDA 115 (172)
Q Consensus 36 ~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~p~~~~~~~~ 115 (172)
.+|++.....-||+.|.+++|++|.++||+|.++++....+. ..+. ..++.+..++.. ++...
T Consensus 2 ~~i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~--~l~~-----~~g~~~~~~~~~----~l~~~------ 64 (352)
T PRK12446 2 KKIVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEK--TIIE-----KENIPYYSISSG----KLRRY------ 64 (352)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCcccc--ccCc-----ccCCcEEEEecc----CcCCC------
Confidence 367777777779999999999999999999999997753221 1111 123666666421 22110
Q ss_pred cchhhhHHHHHHHHHHHHHhHHHHHHHhhhCCCCEEEecCCCcc--HHHHHHHhCCCCC
Q 039991 116 ITNEVNKELIVKFFGATTKLQEPLEQLLRDHKPDCLVADIFFPW--ATDAAAKFGIPRL 172 (172)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~d~VI~D~~~~~--a~~vA~~lgiP~v 172 (172)
.+ . ..+.......... -....++++.+||+||....... +...|..+++|++
T Consensus 65 ~~-~---~~~~~~~~~~~~~-~~~~~i~~~~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~ 118 (352)
T PRK12446 65 FD-L---KNIKDPFLVMKGV-MDAYVRIRKLKPDVIFSKGGFVSVPVVIGGWLNRVPVL 118 (352)
T ss_pred ch-H---HHHHHHHHHHHHH-HHHHHHHHhcCCCEEEecCchhhHHHHHHHHHcCCCEE
Confidence 00 0 1111111111111 12234678889999998653332 4678888899974
No 32
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=97.97 E-value=0.0002 Score=59.59 Aligned_cols=114 Identities=19% Similarity=0.200 Sum_probs=67.6
Q ss_pred eEEEEcCCCccchHHHHHHHHHHHHCCC-EEEEEeCCCChhhhhhhhhhhhcCCCCeEEEEeeCCCCCCCCCCCCCcccc
Q 039991 37 HVFFFPFMAHGHMIPIVDMAKLFVTRGV-KASVITTPANTPYVSKSVERANELGIEMDVKTVKFPSVEAGLPDGCENLDA 115 (172)
Q Consensus 37 ~Ilv~p~p~~GH~~P~l~La~~La~rGh-~Vt~it~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~p~~~~~~~~ 115 (172)
.|++....+-||+.|.++|+++|.++|+ +|.++.+....+.... ....+.++.++.. ++.... .
T Consensus 2 ~ivl~~gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l~-------~~~~~~~~~I~~~----~~~~~~-~--- 66 (357)
T COG0707 2 KIVLTAGGTGGHVFPALALAEELAKRGWEQVIVLGTGDGLEAFLV-------KQYGIEFELIPSG----GLRRKG-S--- 66 (357)
T ss_pred eEEEEeCCCccchhHHHHHHHHHHhhCccEEEEecccccceeeec-------cccCceEEEEecc----cccccC-c---
Confidence 4667777777999999999999999999 5777766543221111 1124667666522 222110 0
Q ss_pred cchhhhHHHHHHHHHHHHHhHHHHHHHhhhCCCCEEEecC--CCccHHHHHHHhCCCCC
Q 039991 116 ITNEVNKELIVKFFGATTKLQEPLEQLLRDHKPDCLVADI--FFPWATDAAAKFGIPRL 172 (172)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~d~VI~D~--~~~~a~~vA~~lgiP~v 172 (172)
. ..+...+... ......++++++.+||+||.=. ....+...|..+|||.+
T Consensus 67 ---~---~~~~~~~~~~-~~~~~a~~il~~~kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ 118 (357)
T COG0707 67 ---L---KLLKAPFKLL-KGVLQARKILKKLKPDVVIGTGGYVSGPVGIAAKLLGIPVI 118 (357)
T ss_pred ---H---HHHHHHHHHH-HHHHHHHHHHHHcCCCEEEecCCccccHHHHHHHhCCCCEE
Confidence 0 1111111111 1223345678889999999843 33445678888899974
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.77 E-value=0.00066 Score=55.22 Aligned_cols=114 Identities=20% Similarity=0.216 Sum_probs=66.7
Q ss_pred eEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCChhhhhhhhhhhhcCCCCeEEEEeeCCCCCCCCCCCCCccccc
Q 039991 37 HVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPANTPYVSKSVERANELGIEMDVKTVKFPSVEAGLPDGCENLDAI 116 (172)
Q Consensus 37 ~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~p~~~~~~~~~ 116 (172)
+|++...-..||......|++.|.++||+|++++...... ..... ..++++..++.. ..+.. .. .
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~--~~~~~-----~~~~~~~~~~~~----~~~~~-~~---~ 65 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRERGAEVLFLGTKRGLE--ARLVP-----KAGIPLHTIPVG----GLRRK-GS---L 65 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhCCCEEEEEECCCcch--hhccc-----ccCCceEEEEec----CcCCC-Ch---H
Confidence 4666666667999999999999999999999998764311 11110 113666666532 11110 00 0
Q ss_pred chhhhHHHHHHHHHHHHHhHHHHHHHhhhCCCCEEEecCC--CccHHHHHHHhCCCCC
Q 039991 117 TNEVNKELIVKFFGATTKLQEPLEQLLRDHKPDCLVADIF--FPWATDAAAKFGIPRL 172 (172)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~d~VI~D~~--~~~a~~vA~~lgiP~v 172 (172)
..+...... -.....+.+++++.+||+|++... ..++...|...|+|++
T Consensus 66 ------~~~~~~~~~-~~~~~~~~~~i~~~~pDvI~~~~~~~~~~~~~~a~~~~~p~v 116 (350)
T cd03785 66 ------KKLKAPFKL-LKGVLQARKILKKFKPDVVVGFGGYVSGPVGLAAKLLGIPLV 116 (350)
T ss_pred ------HHHHHHHHH-HHHHHHHHHHHHhcCCCEEEECCCCcchHHHHHHHHhCCCEE
Confidence 111111111 112234556677789999998753 2334567788888864
No 34
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=97.70 E-value=0.0011 Score=54.31 Aligned_cols=115 Identities=19% Similarity=0.210 Sum_probs=67.9
Q ss_pred ceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCChhhhhhhhhhhhcCCCCeEEEEeeCCCCCCCCCCCCCcccc
Q 039991 36 LHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPANTPYVSKSVERANELGIEMDVKTVKFPSVEAGLPDGCENLDA 115 (172)
Q Consensus 36 ~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~p~~~~~~~~ 115 (172)
++|+++.....||...+..|++.|.++||+|++++...... ..... ..+++++.++.. +.... ..
T Consensus 2 ~~i~i~~~g~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~--~~~~~-----~~g~~~~~~~~~----~~~~~-~~--- 66 (357)
T PRK00726 2 KKILLAGGGTGGHVFPALALAEELKKRGWEVLYLGTARGME--ARLVP-----KAGIEFHFIPSG----GLRRK-GS--- 66 (357)
T ss_pred cEEEEEcCcchHhhhHHHHHHHHHHhCCCEEEEEECCCchh--hhccc-----cCCCcEEEEecc----CcCCC-Ch---
Confidence 67888877667999999999999999999999999864211 11110 123566666422 11110 00
Q ss_pred cchhhhHHHHHHHHHHHHHhHHHHHHHhhhCCCCEEEecCCC-cc-HHHHHHHhCCCCC
Q 039991 116 ITNEVNKELIVKFFGATTKLQEPLEQLLRDHKPDCLVADIFF-PW-ATDAAAKFGIPRL 172 (172)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~d~VI~D~~~-~~-a~~vA~~lgiP~v 172 (172)
. ..+...... -.....+.+++++.+||+|++.... .+ +..++...++|.|
T Consensus 67 ~------~~l~~~~~~-~~~~~~~~~~ik~~~pDvv~~~~~~~~~~~~~~~~~~~~p~v 118 (357)
T PRK00726 67 L------ANLKAPFKL-LKGVLQARKILKRFKPDVVVGFGGYVSGPGGLAARLLGIPLV 118 (357)
T ss_pred H------HHHHHHHHH-HHHHHHHHHHHHhcCCCEEEECCCcchhHHHHHHHHcCCCEE
Confidence 0 111111111 1222345567788899999999632 22 3455666788864
No 35
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=97.64 E-value=0.0014 Score=53.30 Aligned_cols=114 Identities=22% Similarity=0.227 Sum_probs=66.3
Q ss_pred eEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCChhhhhhhhhhhhcCCCCeEEEEeeCCCCCCCCCCCCCccccc
Q 039991 37 HVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPANTPYVSKSVERANELGIEMDVKTVKFPSVEAGLPDGCENLDAI 116 (172)
Q Consensus 37 ~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~p~~~~~~~~~ 116 (172)
+|+++..-..||+.....|+++|.++||+|++++.+.... ..... ..+++++.++.. .... . . .
T Consensus 2 ~i~~~~g~~~g~~~~~~~La~~L~~~g~eV~vv~~~~~~~--~~~~~-----~~g~~~~~i~~~----~~~~-~-~---~ 65 (348)
T TIGR01133 2 KVVLAAGGTGGHIFPALAVAEELIKRGVEVLWLGTKRGLE--KRLVP-----KAGIEFYFIPVG----GLRR-K-G---S 65 (348)
T ss_pred eEEEEeCccHHHHhHHHHHHHHHHhCCCEEEEEeCCCcch--hcccc-----cCCCceEEEecc----CcCC-C-C---h
Confidence 6788887777999977899999999999999998643211 11110 123566666421 1110 0 0 0
Q ss_pred chhhhHHHHHHHHHHHHHhHHHHHHHhhhCCCCEEEecCCCc--cHHHHHHHhCCCCC
Q 039991 117 TNEVNKELIVKFFGATTKLQEPLEQLLRDHKPDCLVADIFFP--WATDAAAKFGIPRL 172 (172)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~d~VI~D~~~~--~a~~vA~~lgiP~v 172 (172)
. ..+....... .....+.+++++.+||+|++..... ++..++...++|.+
T Consensus 66 --~---~~l~~~~~~~-~~~~~l~~~i~~~~pDvVi~~~~~~~~~~~~~~~~~~~p~v 117 (348)
T TIGR01133 66 --F---RLIKTPLKLL-KAVFQARRILKKFKPDAVIGFGGYVSGPAGLAAKLLGIPLF 117 (348)
T ss_pred --H---HHHHHHHHHH-HHHHHHHHHHHhcCCCEEEEcCCcccHHHHHHHHHcCCCEE
Confidence 0 1111111111 1223456778888999999975332 23456777788863
No 36
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=97.32 E-value=0.003 Score=52.93 Aligned_cols=109 Identities=15% Similarity=0.109 Sum_probs=63.1
Q ss_pred ceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCChhhhhhhhhhhhcCCCCeEEEEeeCCCCCCCCCCCCCcccc
Q 039991 36 LHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPANTPYVSKSVERANELGIEMDVKTVKFPSVEAGLPDGCENLDA 115 (172)
Q Consensus 36 ~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~p~~~~~~~~ 115 (172)
++|++...-..||+.|. .|+++|.++|++++++..... .+++.. ....+.+..+ +. .+
T Consensus 6 ~ki~i~aGgtsGhi~pa-al~~~l~~~~~~~~~~g~gg~--~m~~~g-----~~~~~~~~~l---------~v-----~G 63 (385)
T TIGR00215 6 PTIALVAGEASGDILGA-GLRQQLKEHYPNARFIGVAGP--RMAAEG-----CEVLYSMEEL---------SV-----MG 63 (385)
T ss_pred CeEEEEeCCccHHHHHH-HHHHHHHhcCCCcEEEEEccH--HHHhCc-----CccccChHHh---------hh-----cc
Confidence 57888887777999999 999999999999999986632 222210 0001111111 11 00
Q ss_pred cchhhhHHHHHHHHHHHHHhHHHHHHHhhhCCCCEEEe-cCCCccH--HHHHHHhCCCCC
Q 039991 116 ITNEVNKELIVKFFGATTKLQEPLEQLLRDHKPDCLVA-DIFFPWA--TDAAAKFGIPRL 172 (172)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~d~VI~-D~~~~~a--~~vA~~lgiP~v 172 (172)
. . ..+..+.+.. .......+++++.+||+||. |.-.... +..|+.+|||++
T Consensus 64 ~--~---~~l~~~~~~~-~~~~~~~~~l~~~kPd~vi~~g~~~~~~~~a~aa~~~gip~v 117 (385)
T TIGR00215 64 L--R---EVLGRLGRLL-KIRKEVVQLAKQAKPDLLVGIDAPDFNLTKELKKKDPGIKII 117 (385)
T ss_pred H--H---HHHHHHHHHH-HHHHHHHHHHHhcCCCEEEEeCCCCccHHHHHHHhhCCCCEE
Confidence 0 0 1112121111 22235567788889998776 6433232 347888999974
No 37
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=96.88 E-value=0.044 Score=46.26 Aligned_cols=40 Identities=13% Similarity=0.052 Sum_probs=33.2
Q ss_pred CcceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCC
Q 039991 34 PQLHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPA 73 (172)
Q Consensus 34 ~~~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~ 73 (172)
++.+|+++.....|+-.=+..+|+.|+++||+|++++...
T Consensus 2 ~~~~~~~~~~~~~~~~~R~~~~a~~L~~~G~~V~ii~~~~ 41 (415)
T cd03816 2 KRKRVCVLVLGDIGRSPRMQYHALSLAKHGWKVDLVGYLE 41 (415)
T ss_pred CccEEEEEEecccCCCHHHHHHHHHHHhcCceEEEEEecC
Confidence 3567777777777777778899999999999999999764
No 38
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=96.68 E-value=0.0093 Score=49.25 Aligned_cols=36 Identities=8% Similarity=0.136 Sum_probs=30.7
Q ss_pred ceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCC
Q 039991 36 LHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTP 72 (172)
Q Consensus 36 ~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~ 72 (172)
++|++......||+.|.. ++++|.++++++.++...
T Consensus 2 ~ki~i~~Ggt~G~i~~a~-l~~~L~~~~~~~~~~~~~ 37 (380)
T PRK00025 2 LRIAIVAGEVSGDLLGAG-LIRALKARAPNLEFVGVG 37 (380)
T ss_pred ceEEEEecCcCHHHHHHH-HHHHHHhcCCCcEEEEEc
Confidence 478888877779999998 999999988888888754
No 39
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=96.63 E-value=0.061 Score=44.77 Aligned_cols=99 Identities=16% Similarity=0.197 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHCCCEEEEEeCCCChhhhhhhhhhhhcCCCCeEEEEeeCCCCCCCCCCCCCcccccchhhhHHHHHHHHH
Q 039991 51 PIVDMAKLFVTRGVKASVITTPANTPYVSKSVERANELGIEMDVKTVKFPSVEAGLPDGCENLDAITNEVNKELIVKFFG 130 (172)
Q Consensus 51 P~l~La~~La~rGh~Vt~it~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 130 (172)
++.+||+.|+++||+|+++|...... . .+ +++++.++.... +.. ....-. ..+.....
T Consensus 12 ~~~~la~~L~~~G~~v~~~~~~~~~~----~------~~-~v~~~~~~~~~~----~~~-~~~~~~------~~~~~~~~ 69 (396)
T cd03818 12 QFRHLAPALAAQGHEVVFLTEPNAAP----P------PG-GVRVVRYRPPRG----PTS-GTHPYL------REFEEAVL 69 (396)
T ss_pred hHHHHHHHHHHCCCEEEEEecCCCCC----C------CC-CeeEEEecCCCC----CCC-CCCccc------hhHHHHHH
Confidence 46789999999999999999875421 0 11 366666652211 110 000000 11111111
Q ss_pred HHHHhHHHHHHH-hhhCCCCEEEecCCCccHHHHHHHh-CCCC
Q 039991 131 ATTKLQEPLEQL-LRDHKPDCLVADIFFPWATDAAAKF-GIPR 171 (172)
Q Consensus 131 ~~~~~~~~l~~l-l~~~~~d~VI~D~~~~~a~~vA~~l-giP~ 171 (172)
....+...+..+ .+..+||+|++...+.++..+.+.+ ++|.
T Consensus 70 ~~~~~~~~~~~~~~~~~~pdvi~~h~~~~~~~~l~~~~~~~~~ 112 (396)
T cd03818 70 RGQAVARALLALRAKGFRPDVIVAHPGWGETLFLKDVWPDAPL 112 (396)
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEECCccchhhhHHHhCCCCCE
Confidence 112233333344 2344899999997666666666664 3553
No 40
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=96.07 E-value=0.012 Score=41.47 Aligned_cols=91 Identities=22% Similarity=0.319 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHCCCEEEEEeCCCChhhhhhhhhhhhcCCCCeEEEEeeCCCCCCCCCCCCCcccccchhhhHHHHHHHHH
Q 039991 51 PIVDMAKLFVTRGVKASVITTPANTPYVSKSVERANELGIEMDVKTVKFPSVEAGLPDGCENLDAITNEVNKELIVKFFG 130 (172)
Q Consensus 51 P~l~La~~La~rGh~Vt~it~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 130 (172)
-+..|+++|+++||+|+++++........ . ...+++++.++.+.. + ...... ...
T Consensus 6 ~~~~l~~~L~~~G~~V~v~~~~~~~~~~~--~-----~~~~~~~~~~~~~~~----~---~~~~~~------~~~----- 60 (160)
T PF13579_consen 6 YVRELARALAARGHEVTVVTPQPDPEDDE--E-----EEDGVRVHRLPLPRR----P---WPLRLL------RFL----- 60 (160)
T ss_dssp HHHHHHHHHHHTT-EEEEEEE---GGG-S--E-----EETTEEEEEE--S-S----S---SGGGHC------CHH-----
T ss_pred HHHHHHHHHHHCCCEEEEEecCCCCcccc--c-----ccCCceEEeccCCcc----c---hhhhhH------HHH-----
Confidence 36789999999999999999765433111 0 112477777764311 1 010000 101
Q ss_pred HHHHhHHHHHHHh--hhCCCCEEEecCCCcc-HHHHHH-HhCCCCC
Q 039991 131 ATTKLQEPLEQLL--RDHKPDCLVADIFFPW-ATDAAA-KFGIPRL 172 (172)
Q Consensus 131 ~~~~~~~~l~~ll--~~~~~d~VI~D~~~~~-a~~vA~-~lgiP~v 172 (172)
..+.+++ ++.+||+|.+.....+ ...++. ..++|+|
T Consensus 61 ------~~~~~~l~~~~~~~Dvv~~~~~~~~~~~~~~~~~~~~p~v 100 (160)
T PF13579_consen 61 ------RRLRRLLAARRERPDVVHAHSPTAGLVAALARRRRGIPLV 100 (160)
T ss_dssp ------HHHHHHCHHCT---SEEEEEHHHHHHHHHHHHHHHT--EE
T ss_pred ------HHHHHHHhhhccCCeEEEecccchhHHHHHHHHccCCcEE
Confidence 2223444 5668998888763322 234444 7788864
No 41
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=96.00 E-value=0.11 Score=41.66 Aligned_cols=32 Identities=16% Similarity=0.405 Sum_probs=28.8
Q ss_pred CCccchHHHHHHHHHHHHCCCEEEEEeCCCCh
Q 039991 44 MAHGHMIPIVDMAKLFVTRGVKASVITTPANT 75 (172)
Q Consensus 44 p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~ 75 (172)
-|.||+.=.+.||++|.++|++|+|++.....
T Consensus 12 iG~GHv~Rcl~LA~~l~~~g~~v~f~~~~~~~ 43 (279)
T TIGR03590 12 IGLGHVMRCLTLARALHAQGAEVAFACKPLPG 43 (279)
T ss_pred ccccHHHHHHHHHHHHHHCCCEEEEEeCCCCH
Confidence 36799999999999999999999999988643
No 42
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=95.81 E-value=0.11 Score=36.44 Aligned_cols=98 Identities=16% Similarity=0.195 Sum_probs=57.5
Q ss_pred EEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCChhhhhhhhhhhhcCCCCeEEEEeeCCCCCCCCCCCCCcccccc
Q 039991 38 VFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPANTPYVSKSVERANELGIEMDVKTVKFPSVEAGLPDGCENLDAIT 117 (172)
Q Consensus 38 Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~p~~~~~~~~~~ 117 (172)
|+++......| ...+++.|.++|++|++++.......... ..++.+..++.. ... .
T Consensus 2 Il~i~~~~~~~---~~~~~~~L~~~g~~V~ii~~~~~~~~~~~--------~~~i~~~~~~~~---------~k~----~ 57 (139)
T PF13477_consen 2 ILLIGNTPSTF---IYNLAKELKKRGYDVHIITPRNDYEKYEI--------IEGIKVIRLPSP---------RKS----P 57 (139)
T ss_pred EEEEecCcHHH---HHHHHHHHHHCCCEEEEEEcCCCchhhhH--------hCCeEEEEecCC---------CCc----c
Confidence 55555444444 56889999999999999999644211110 224777666311 100 0
Q ss_pred hhhhHHHHHHHHHHHHHhHHHHHHHhhhCCCCEEEecCCCccH---HHHHHHhC-CCCC
Q 039991 118 NEVNKELIVKFFGATTKLQEPLEQLLRDHKPDCLVADIFFPWA---TDAAAKFG-IPRL 172 (172)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~d~VI~D~~~~~a---~~vA~~lg-iP~v 172 (172)
. ..+. .. .+.+++++.+||+|.+-.....+ ..++...| +|++
T Consensus 58 -~---~~~~--------~~-~l~k~ik~~~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i 103 (139)
T PF13477_consen 58 -L---NYIK--------YF-RLRKIIKKEKPDVIHCHTPSPYGLFAMLAKKLLKNKKVI 103 (139)
T ss_pred -H---HHHH--------HH-HHHHHhccCCCCEEEEecCChHHHHHHHHHHHcCCCCEE
Confidence 0 1111 12 55788888899999777665432 24556667 7653
No 43
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=95.72 E-value=0.18 Score=40.00 Aligned_cols=29 Identities=24% Similarity=0.399 Sum_probs=25.9
Q ss_pred ccchHHHHHHHHHHHHCCCEEEEEeCCCC
Q 039991 46 HGHMIPIVDMAKLFVTRGVKASVITTPAN 74 (172)
Q Consensus 46 ~GH~~P~l~La~~La~rGh~Vt~it~~~~ 74 (172)
.|+-.-...|+++|+++||+|+++++...
T Consensus 15 gG~~~~~~~l~~~L~~~g~~v~v~~~~~~ 43 (359)
T cd03823 15 GGAEVVAHDLAEALAKRGHEVAVLTAGED 43 (359)
T ss_pred cchHHHHHHHHHHHHhcCCceEEEeCCCC
Confidence 47888899999999999999999998754
No 44
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=95.62 E-value=0.069 Score=43.68 Aligned_cols=29 Identities=14% Similarity=0.363 Sum_probs=25.2
Q ss_pred ccchHHHHHHHHHHHHCCCEEEEEeCCCC
Q 039991 46 HGHMIPIVDMAKLFVTRGVKASVITTPAN 74 (172)
Q Consensus 46 ~GH~~P~l~La~~La~rGh~Vt~it~~~~ 74 (172)
.|+-..+..|++.|+++||+|++++....
T Consensus 21 GG~~~~~~~l~~~L~~~g~~V~v~~~~~~ 49 (398)
T cd03800 21 GGQNVYVLELARALARLGHEVDIFTRRID 49 (398)
T ss_pred CceeehHHHHHHHHhccCceEEEEEecCC
Confidence 37778999999999999999999997543
No 45
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=95.55 E-value=0.078 Score=44.03 Aligned_cols=57 Identities=14% Similarity=0.276 Sum_probs=43.3
Q ss_pred CcceEEEEcC--CCccchHHHHHHHHHHHHC--CCEEEEEeCCCChhhhhhhhhhhhcCCCCeEEEEee
Q 039991 34 PQLHVFFFPF--MAHGHMIPIVDMAKLFVTR--GVKASVITTPANTPYVSKSVERANELGIEMDVKTVK 98 (172)
Q Consensus 34 ~~~~Ilv~p~--p~~GH~~P~l~La~~La~r--Gh~Vt~it~~~~~~~~~~~~~~~~~~~~~i~~~~l~ 98 (172)
++++|+++.- -|-||+-=++.+|+.|+.. |.+|++++.......+.. ..++.++.+|
T Consensus 8 ~~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F~~--------~~gVd~V~LP 68 (400)
T COG4671 8 KRPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGFPG--------PAGVDFVKLP 68 (400)
T ss_pred ccceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCCCC--------cccCceEecC
Confidence 3568888874 4569999999999999997 999999998765332221 2358888887
No 46
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=95.52 E-value=0.2 Score=39.94 Aligned_cols=29 Identities=31% Similarity=0.459 Sum_probs=26.2
Q ss_pred ccchHHHHHHHHHHHHCCCEEEEEeCCCC
Q 039991 46 HGHMIPIVDMAKLFVTRGVKASVITTPAN 74 (172)
Q Consensus 46 ~GH~~P~l~La~~La~rGh~Vt~it~~~~ 74 (172)
.|+-.-...+++.|+++||+|++++....
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~~~~~~~~ 42 (394)
T cd03794 14 GGGAFRTTELAEELVKRGHEVTVITGSPN 42 (394)
T ss_pred CCcceeHHHHHHHHHhCCceEEEEecCCC
Confidence 58999999999999999999999997754
No 47
>PRK10307 putative glycosyl transferase; Provisional
Probab=95.35 E-value=0.26 Score=41.20 Aligned_cols=22 Identities=36% Similarity=0.569 Sum_probs=20.0
Q ss_pred HHHHHHHHHHCCCEEEEEeCCC
Q 039991 52 IVDMAKLFVTRGVKASVITTPA 73 (172)
Q Consensus 52 ~l~La~~La~rGh~Vt~it~~~ 73 (172)
+..|+++|.++||+|+++|+..
T Consensus 21 ~~~l~~~L~~~G~~V~vit~~~ 42 (412)
T PRK10307 21 TGEMAEWLAARGHEVRVITAPP 42 (412)
T ss_pred HHHHHHHHHHCCCeEEEEecCC
Confidence 5799999999999999999764
No 48
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=94.99 E-value=0.099 Score=42.53 Aligned_cols=44 Identities=14% Similarity=0.229 Sum_probs=38.7
Q ss_pred CcceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCChhh
Q 039991 34 PQLHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPANTPY 77 (172)
Q Consensus 34 ~~~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~ 77 (172)
+...|.+...||.|--.-.-.|+++|.++||+|-++..++.+..
T Consensus 50 ~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~ 93 (323)
T COG1703 50 NAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPF 93 (323)
T ss_pred CCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCC
Confidence 34577899999999999999999999999999999998876543
No 49
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=94.69 E-value=0.91 Score=37.22 Aligned_cols=37 Identities=24% Similarity=0.315 Sum_probs=26.6
Q ss_pred eEE-EEcCCCccch-HHHHHHHHHHHHCCCEEEEEeCCC
Q 039991 37 HVF-FFPFMAHGHM-IPIVDMAKLFVTRGVKASVITTPA 73 (172)
Q Consensus 37 ~Il-v~p~p~~GH~-~P~l~La~~La~rGh~Vt~it~~~ 73 (172)
+|+ +.|.-+.|=. .-+..||++|+++||+|+++++..
T Consensus 2 kIl~~~~~~~~gG~e~~~~~la~~L~~~G~~V~v~~~~~ 40 (392)
T cd03805 2 RVAFIHPDLGIGGAERLVVDAALALQSRGHEVTIYTSHH 40 (392)
T ss_pred eEEEECCCCCCchHHHHHHHHHHHHHhCCCeEEEEcCCC
Confidence 455 4444344433 456899999999999999999753
No 50
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=94.09 E-value=1 Score=37.28 Aligned_cols=97 Identities=20% Similarity=0.290 Sum_probs=58.5
Q ss_pred cchHHHHHHHHHHHHCCCEEEEEeCCCChhhhhhhhhhhhcCCCCeEEEEeeCCCCCCCCCCCCCcccccchhhhHHHHH
Q 039991 47 GHMIPIVDMAKLFVTRGVKASVITTPANTPYVSKSVERANELGIEMDVKTVKFPSVEAGLPDGCENLDAITNEVNKELIV 126 (172)
Q Consensus 47 GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 126 (172)
-|+.-+..+.++|.++||+|.+.+-... .....+.. .++.+..+-. .+ .. ...
T Consensus 11 ~hvhfFk~~I~eL~~~GheV~it~R~~~--~~~~LL~~-----yg~~y~~iG~--------~g-~~-----------~~~ 63 (335)
T PF04007_consen 11 AHVHFFKNIIRELEKRGHEVLITARDKD--ETEELLDL-----YGIDYIVIGK--------HG-DS-----------LYG 63 (335)
T ss_pred hHHHHHHHHHHHHHhCCCEEEEEEeccc--hHHHHHHH-----cCCCeEEEcC--------CC-CC-----------HHH
Confidence 4999999999999999999999886643 22222221 2466666621 11 11 011
Q ss_pred HHHHHHHHhHHHHHHHhhhCCCCEEEecCCCccHHHHHHHhCCCCC
Q 039991 127 KFFGATTKLQEPLEQLLRDHKPDCLVADIFFPWATDAAAKFGIPRL 172 (172)
Q Consensus 127 ~~~~~~~~~~~~l~~ll~~~~~d~VI~D~~~~~a~~vA~~lgiP~v 172 (172)
.+...... ...+-+++++.+||++|+- ....+..+|.-+|+|.|
T Consensus 64 Kl~~~~~R-~~~l~~~~~~~~pDv~is~-~s~~a~~va~~lgiP~I 107 (335)
T PF04007_consen 64 KLLESIER-QYKLLKLIKKFKPDVAISF-GSPEAARVAFGLGIPSI 107 (335)
T ss_pred HHHHHHHH-HHHHHHHHHhhCCCEEEec-CcHHHHHHHHHhCCCeE
Confidence 11111111 2233345566789999963 34556789999999975
No 51
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=93.93 E-value=0.84 Score=38.01 Aligned_cols=27 Identities=30% Similarity=0.410 Sum_probs=23.2
Q ss_pred cchHHHHHHHHHHHHCCCEEEEEeCCC
Q 039991 47 GHMIPIVDMAKLFVTRGVKASVITTPA 73 (172)
Q Consensus 47 GH~~P~l~La~~La~rGh~Vt~it~~~ 73 (172)
|--.-...|++.|+++||+|+++++..
T Consensus 15 G~e~~~~~la~~L~~~G~~V~v~~~~~ 41 (398)
T cd03796 15 GVETHIYQLSQCLIKRGHKVVVITHAY 41 (398)
T ss_pred cHHHHHHHHHHHHHHcCCeeEEEeccC
Confidence 445678999999999999999999753
No 52
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=92.93 E-value=2 Score=32.18 Aligned_cols=38 Identities=18% Similarity=0.148 Sum_probs=27.3
Q ss_pred HhHHHHHHHhhhC-CCCEEEecCCCccHHHHHHHh-CCCC
Q 039991 134 KLQEPLEQLLRDH-KPDCLVADIFFPWATDAAAKF-GIPR 171 (172)
Q Consensus 134 ~~~~~l~~ll~~~-~~d~VI~D~~~~~a~~vA~~l-giP~ 171 (172)
.+...+.+|.++. .||+||.-..+..++-+-+.+ ++|.
T Consensus 52 av~~a~~~L~~~Gf~PDvI~~H~GWGe~Lflkdv~P~a~l 91 (171)
T PF12000_consen 52 AVARAARQLRAQGFVPDVIIAHPGWGETLFLKDVFPDAPL 91 (171)
T ss_pred HHHHHHHHHHHcCCCCCEEEEcCCcchhhhHHHhCCCCcE
Confidence 4455555665554 789999999888888887777 5654
No 53
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=92.56 E-value=0.2 Score=41.49 Aligned_cols=38 Identities=16% Similarity=0.300 Sum_probs=31.3
Q ss_pred cceEEEEcCCCc-cchHHHHHHHHHHHHCCCEEEEEeCC
Q 039991 35 QLHVFFFPFMAH-GHMIPIVDMAKLFVTRGVKASVITTP 72 (172)
Q Consensus 35 ~~~Ilv~p~p~~-GH~~P~l~La~~La~rGh~Vt~it~~ 72 (172)
+++|+++..... ||..+..+|+++|.++||+|.+++..
T Consensus 4 ~~rili~t~~~G~GH~~~a~al~~~l~~~g~~~~~~~d~ 42 (380)
T PRK13609 4 NPKVLILTAHYGNGHVQVAKTLEQTFRQKGIKDVIVCDL 42 (380)
T ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHHhcCCCcEEEEEh
Confidence 567887766555 99999999999999999997777654
No 54
>PLN02275 transferase, transferring glycosyl groups
Probab=92.53 E-value=5.3 Score=33.04 Aligned_cols=38 Identities=11% Similarity=0.078 Sum_probs=29.6
Q ss_pred cceEEEEcCCCccchHHHHHHHHHHHHCCC-EEEEEeCCCC
Q 039991 35 QLHVFFFPFMAHGHMIPIVDMAKLFVTRGV-KASVITTPAN 74 (172)
Q Consensus 35 ~~~Ilv~p~p~~GH~~P~l~La~~La~rGh-~Vt~it~~~~ 74 (172)
+.||.+. +-.|.---+..+++.|+++|| +|++++....
T Consensus 6 ~~~~~~~--~~~g~~~r~~~~~~~l~~~~~~~v~vi~~~~~ 44 (371)
T PLN02275 6 RAAVVVL--GDFGRSPRMQYHALSLARQASFQVDVVAYGGS 44 (371)
T ss_pred EEEEEEe--cCCCCCHHHHHHHHHHHhcCCceEEEEEecCC
Confidence 3455544 677888889999999999986 7999987643
No 55
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=92.29 E-value=1.2 Score=37.73 Aligned_cols=29 Identities=14% Similarity=0.313 Sum_probs=22.7
Q ss_pred CCc-cchHHHHHHHHHHHHCCC--EEEEEeCC
Q 039991 44 MAH-GHMIPIVDMAKLFVTRGV--KASVITTP 72 (172)
Q Consensus 44 p~~-GH~~P~l~La~~La~rGh--~Vt~it~~ 72 (172)
|.. |=-.-+..|+++|+++|| +|+++|..
T Consensus 23 p~~GG~~~~v~~La~~L~~~G~~~~V~v~t~~ 54 (439)
T TIGR02472 23 ADTGGQTKYVLELARALARRSEVEQVDLVTRL 54 (439)
T ss_pred CCCCCcchHHHHHHHHHHhCCCCcEEEEEecc
Confidence 444 334567899999999998 99999964
No 56
>PLN00142 sucrose synthase
Probab=91.74 E-value=1.3 Score=41.02 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=20.8
Q ss_pred CCCEEEecCCCc-c-HHHHHHHhCCCCC
Q 039991 147 KPDCLVADIFFP-W-ATDAAAKFGIPRL 172 (172)
Q Consensus 147 ~~d~VI~D~~~~-~-a~~vA~~lgiP~v 172 (172)
+||+|...+... + |..+|+++|||.+
T Consensus 408 ~PDlIHaHYwdsg~vA~~La~~lgVP~v 435 (815)
T PLN00142 408 KPDLIIGNYSDGNLVASLLAHKLGVTQC 435 (815)
T ss_pred CCCEEEECCccHHHHHHHHHHHhCCCEE
Confidence 699999996554 3 4699999999974
No 57
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=91.48 E-value=0.25 Score=40.08 Aligned_cols=37 Identities=16% Similarity=0.265 Sum_probs=29.9
Q ss_pred eEEEEcCCCc-cchHHHHHHHHHHHHCCCEEEEEeCCC
Q 039991 37 HVFFFPFMAH-GHMIPIVDMAKLFVTRGVKASVITTPA 73 (172)
Q Consensus 37 ~Ilv~p~p~~-GH~~P~l~La~~La~rGh~Vt~it~~~ 73 (172)
+|+++.+|.. |.-.-...|++.|+++||+|++++...
T Consensus 2 ki~~~~~p~~gG~~~~~~~la~~L~~~G~~v~v~~~~~ 39 (371)
T cd04962 2 KIGIVCYPTYGGSGVVATELGKALARRGHEVHFITSSR 39 (371)
T ss_pred ceeEEEEeCCCCccchHHHHHHHHHhcCCceEEEecCC
Confidence 5665555554 777889999999999999999998763
No 58
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=91.43 E-value=6 Score=36.59 Aligned_cols=113 Identities=19% Similarity=0.238 Sum_probs=55.9
Q ss_pred ccchHHHHHHHHH--------HHHCCC----EEEEEeCCCChhhhh---hhhhhhhcCCCCeEEEEeeCCCCCCCCCCCC
Q 039991 46 HGHMIPIVDMAKL--------FVTRGV----KASVITTPANTPYVS---KSVERANELGIEMDVKTVKFPSVEAGLPDGC 110 (172)
Q Consensus 46 ~GH~~P~l~La~~--------La~rGh----~Vt~it~~~~~~~~~---~~~~~~~~~~~~i~~~~l~~~~~~~~~p~~~ 110 (172)
.|+..=.++||++ |+++|| +|+++|-......-. ..++... ..++.+++.+|+-+. .+.
T Consensus 279 GGq~vYV~elaraL~~~~~~~La~~G~~v~~~V~I~TR~~~~~~~~~~~~~~e~~~-~~~~~~I~rvp~g~~-----~~~ 352 (784)
T TIGR02470 279 GGQVVYILDQVRALENEMLQRIKLQGLEITPKILIVTRLIPDAEGTTCNQRLEKVY-GTEHAWILRVPFRTE-----NGI 352 (784)
T ss_pred CCceeHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCCcccccccccccccc-CCCceEEEEecCCCC-----ccc
Confidence 4666667777776 568899 777888543211100 0011110 113577777764321 110
Q ss_pred CcccccchhhhHHHHHHHHHHHHHhHHHHHH-Hhhh--CCCCEEEecCCCc-c-HHHHHHHhCCCC
Q 039991 111 ENLDAITNEVNKELIVKFFGATTKLQEPLEQ-LLRD--HKPDCLVADIFFP-W-ATDAAAKFGIPR 171 (172)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-ll~~--~~~d~VI~D~~~~-~-a~~vA~~lgiP~ 171 (172)
....-++.. + +...++.+...+.+ +.++ .+||+|+.-.... . |..+|+++|||.
T Consensus 353 ~~~~~i~k~---~----l~p~l~~f~~~~~~~~~~~~~~~pDlIHahy~d~glva~lla~~lgVP~ 411 (784)
T TIGR02470 353 ILRNWISRF---E----IWPYLETFAEDAEKEILAELQGKPDLIIGNYSDGNLVASLLARKLGVTQ 411 (784)
T ss_pred ccccccCHH---H----HHHHHHHHHHHHHHHHHHhcCCCCCEEEECCCchHHHHHHHHHhcCCCE
Confidence 000001211 1 11122333333333 2223 3799999976443 2 468999999995
No 59
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=91.36 E-value=3.9 Score=32.72 Aligned_cols=27 Identities=22% Similarity=0.361 Sum_probs=23.0
Q ss_pred cchHHHHHHHHHHHHCCCEEEEEeCCC
Q 039991 47 GHMIPIVDMAKLFVTRGVKASVITTPA 73 (172)
Q Consensus 47 GH~~P~l~La~~La~rGh~Vt~it~~~ 73 (172)
|--.-...|+++|+++||+|+++++..
T Consensus 11 G~e~~~~~l~~~L~~~g~~v~v~~~~~ 37 (355)
T cd03819 11 GVERGTLELARALVERGHRSLVASAGG 37 (355)
T ss_pred cHHHHHHHHHHHHHHcCCEEEEEcCCC
Confidence 444678899999999999999998764
No 60
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=91.31 E-value=0.92 Score=31.27 Aligned_cols=45 Identities=13% Similarity=0.106 Sum_probs=37.0
Q ss_pred eEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCChhhhhhh
Q 039991 37 HVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPANTPYVSKS 81 (172)
Q Consensus 37 ~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~~~~ 81 (172)
+|++.+.++-.|-....-++..|.++|++|.++......+.+...
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l~~~ 45 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDAGFEVIDLGVDVPPEEIVEA 45 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHH
Confidence 478889999999999999999999999999998876554444333
No 61
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=89.93 E-value=0.53 Score=37.02 Aligned_cols=38 Identities=13% Similarity=0.249 Sum_probs=31.7
Q ss_pred eEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCC
Q 039991 37 HVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPAN 74 (172)
Q Consensus 37 ~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~ 74 (172)
+|+++.....|+...+..+++.|.++||+|++++....
T Consensus 1 kIl~i~~~~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~ 38 (359)
T cd03808 1 KILHIVTVDGGLYSFRLPLIKALRAAGYEVHVVAPPGD 38 (359)
T ss_pred CeeEEEecchhHHHHHHHHHHHHHhcCCeeEEEecCCC
Confidence 35655555678889999999999999999999998755
No 62
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=89.86 E-value=0.61 Score=37.10 Aligned_cols=29 Identities=17% Similarity=0.244 Sum_probs=26.5
Q ss_pred ccchHHHHHHHHHHHHCCCEEEEEeCCCC
Q 039991 46 HGHMIPIVDMAKLFVTRGVKASVITTPAN 74 (172)
Q Consensus 46 ~GH~~P~l~La~~La~rGh~Vt~it~~~~ 74 (172)
.|+-..+..|+++|+++||+|+++++...
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~~~~~~~~ 42 (364)
T cd03814 14 NGVVRTLQRLVEHLRARGHEVLVIAPGPF 42 (364)
T ss_pred cceehHHHHHHHHHHHCCCEEEEEeCCch
Confidence 58999999999999999999999998743
No 63
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=89.66 E-value=2.1 Score=30.72 Aligned_cols=47 Identities=9% Similarity=0.011 Sum_probs=40.7
Q ss_pred cceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCChhhhhhh
Q 039991 35 QLHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPANTPYVSKS 81 (172)
Q Consensus 35 ~~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~~~~ 81 (172)
+.+|++...++-+|-.-..-++..|.++|++|+++...-..+.+...
T Consensus 3 ~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~ 49 (137)
T PRK02261 3 KKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDA 49 (137)
T ss_pred CCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHH
Confidence 57899999999999999999999999999999999988765555443
No 64
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=88.94 E-value=6.2 Score=37.62 Aligned_cols=27 Identities=15% Similarity=0.322 Sum_probs=23.2
Q ss_pred cchHHHHHHHHHHHHCC--CEEEEEeCCC
Q 039991 47 GHMIPIVDMAKLFVTRG--VKASVITTPA 73 (172)
Q Consensus 47 GH~~P~l~La~~La~rG--h~Vt~it~~~ 73 (172)
|+..=.++||++|+++| |+|+++|-..
T Consensus 196 Gq~vYV~ELAraLa~~~gv~~Vdl~TR~~ 224 (1050)
T TIGR02468 196 GQVKYVVELARALGSMPGVYRVDLLTRQV 224 (1050)
T ss_pred ChHHHHHHHHHHHHhCCCCCEEEEEeCCc
Confidence 56677799999999998 8999999654
No 65
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=88.85 E-value=0.88 Score=36.13 Aligned_cols=33 Identities=18% Similarity=0.170 Sum_probs=28.3
Q ss_pred cCCCccchHHHHHHHHHHHHCCCEEEEEeCCCC
Q 039991 42 PFMAHGHMIPIVDMAKLFVTRGVKASVITTPAN 74 (172)
Q Consensus 42 p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~ 74 (172)
|....|+-.-...+++.|+++||+|+++++...
T Consensus 10 ~p~~~G~~~~~~~l~~~L~~~g~~v~v~~~~~~ 42 (374)
T cd03817 10 LPQVNGVATSIRRLAEELEKRGHEVYVVAPSYP 42 (374)
T ss_pred cCCCCCeehHHHHHHHHHHHcCCeEEEEeCCCC
Confidence 445568999999999999999999999997643
No 66
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=88.61 E-value=0.59 Score=33.27 Aligned_cols=28 Identities=18% Similarity=0.419 Sum_probs=22.7
Q ss_pred cchHHHHHHHHHHHHCCCEEEEEeCCCC
Q 039991 47 GHMIPIVDMAKLFVTRGVKASVITTPAN 74 (172)
Q Consensus 47 GH~~P~l~La~~La~rGh~Vt~it~~~~ 74 (172)
|==.-+..|+++|+++||+|+++++...
T Consensus 13 G~e~~~~~l~~~l~~~G~~v~v~~~~~~ 40 (177)
T PF13439_consen 13 GAERVVLNLARALAKRGHEVTVVSPGVK 40 (177)
T ss_dssp HHHHHHHHHHHHHHHTT-EEEEEESS-T
T ss_pred hHHHHHHHHHHHHHHCCCEEEEEEcCCC
Confidence 5557889999999999999999987743
No 67
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=88.01 E-value=3.4 Score=31.45 Aligned_cols=47 Identities=11% Similarity=-0.010 Sum_probs=39.7
Q ss_pred cceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCChhhhhhh
Q 039991 35 QLHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPANTPYVSKS 81 (172)
Q Consensus 35 ~~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~~~~ 81 (172)
..+|++.+.++-.|-....-++..|.++|++|+++......+.+...
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~ 128 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEA 128 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHH
Confidence 57899999999999999999999999999999999877555554443
No 68
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=87.82 E-value=1.3 Score=37.87 Aligned_cols=40 Identities=15% Similarity=0.095 Sum_probs=29.8
Q ss_pred CcceEEEEcCC----Cc-cchHHHHHHHHHHHHCCCEEEEEeCCC
Q 039991 34 PQLHVFFFPFM----AH-GHMIPIVDMAKLFVTRGVKASVITTPA 73 (172)
Q Consensus 34 ~~~~Ilv~p~p----~~-GH~~P~l~La~~La~rGh~Vt~it~~~ 73 (172)
+++||+++.-| .. |=-+-+..|++.|.++||+|+++++..
T Consensus 57 ~~mrI~~~~~~~~~~~~gG~~~~~~~l~~~L~~~G~eV~vlt~~~ 101 (465)
T PLN02871 57 RPRRIALFVEPSPFSYVSGYKNRFQNFIRYLREMGDEVLVVTTDE 101 (465)
T ss_pred CCceEEEEECCcCCcccccHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 35788877332 22 333577899999999999999999764
No 69
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=86.67 E-value=1.4 Score=35.79 Aligned_cols=40 Identities=18% Similarity=0.268 Sum_probs=32.6
Q ss_pred eEEEEcC----CCccchHHHHHHHHHHHHCCCEEEEEeCCCChh
Q 039991 37 HVFFFPF----MAHGHMIPIVDMAKLFVTRGVKASVITTPANTP 76 (172)
Q Consensus 37 ~Ilv~p~----p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~ 76 (172)
||++++- -|.||+.-++.||++|..+|..+++++......
T Consensus 2 ~V~i~~Dgg~~iGmGHV~R~l~LA~~l~k~~~~~~fl~k~~~e~ 45 (318)
T COG3980 2 KVLIRCDGGLEIGMGHVMRTLTLARELEKRGFACLFLTKQDIEA 45 (318)
T ss_pred cEEEEecCCcccCcchhhhHHHHHHHHHhcCceEEEecccchhh
Confidence 4555443 356999999999999999999999999887544
No 70
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=85.68 E-value=1.1 Score=35.93 Aligned_cols=28 Identities=29% Similarity=0.528 Sum_probs=25.0
Q ss_pred ccchHHHHHHHHHHHHCCCEEEEEeCCC
Q 039991 46 HGHMIPIVDMAKLFVTRGVKASVITTPA 73 (172)
Q Consensus 46 ~GH~~P~l~La~~La~rGh~Vt~it~~~ 73 (172)
.|+-.....|++.|.++||+|++++...
T Consensus 12 gG~~~~~~~l~~~L~~~g~~v~v~~~~~ 39 (360)
T cd04951 12 GGAEKQVVDLADQFVAKGHQVAIISLTG 39 (360)
T ss_pred CCHHHHHHHHHHhcccCCceEEEEEEeC
Confidence 4888999999999999999999998643
No 71
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=85.55 E-value=2.1 Score=33.98 Aligned_cols=27 Identities=15% Similarity=0.302 Sum_probs=23.6
Q ss_pred cchHHHHHHHHHHHHCCCEEEEEeCCC
Q 039991 47 GHMIPIVDMAKLFVTRGVKASVITTPA 73 (172)
Q Consensus 47 GH~~P~l~La~~La~rGh~Vt~it~~~ 73 (172)
|--.-...|++.|.++||+|++++...
T Consensus 20 G~~~~~~~l~~~L~~~g~~V~v~~~~~ 46 (335)
T cd03802 20 GTERVVAALTEGLVARGHEVTLFASGD 46 (335)
T ss_pred cHHHHHHHHHHHHHhcCceEEEEecCC
Confidence 555778999999999999999999764
No 72
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=84.83 E-value=1.7 Score=34.81 Aligned_cols=38 Identities=11% Similarity=0.188 Sum_probs=30.4
Q ss_pred eEEEEc-CCC-ccchHHHHHHHHHHHHCCCEEEEEeCCCC
Q 039991 37 HVFFFP-FMA-HGHMIPIVDMAKLFVTRGVKASVITTPAN 74 (172)
Q Consensus 37 ~Ilv~p-~p~-~GH~~P~l~La~~La~rGh~Vt~it~~~~ 74 (172)
+|+++. .++ .|+-.-...++++|.++||+|++++....
T Consensus 2 kIl~~~~~~~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~ 41 (365)
T cd03825 2 KVLHLNTSDISGGAARAAYRLHRALQAAGVDSTMLVQEKK 41 (365)
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHHHhcCCceeEEEeecc
Confidence 566544 334 48889999999999999999999997754
No 73
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=84.45 E-value=14 Score=33.23 Aligned_cols=130 Identities=11% Similarity=0.120 Sum_probs=60.5
Q ss_pred EEEcCCCccchHHHHHHHHHHHH------CCCEEEEEeCCCChhhhhhhh-hhhhcCCCCeEEEEeeCCCCCCCCCCCCC
Q 039991 39 FFFPFMAHGHMIPIVDMAKLFVT------RGVKASVITTPANTPYVSKSV-ERANELGIEMDVKTVKFPSVEAGLPDGCE 111 (172)
Q Consensus 39 lv~p~p~~GH~~P~l~La~~La~------rGh~Vt~it~~~~~~~~~~~~-~~~~~~~~~i~~~~l~~~~~~~~~p~~~~ 111 (172)
+++-..+.|-+.=+..|----.+ ++++|-+++.+...+...+.+ ++.....+++++.-+-.+... ..|.+
T Consensus 196 v~i~g~~~g~~~y~rnl~li~~~~~~~~~~~~kIfI~AGE~SGDlhgA~Li~aLk~~~P~i~~~GvGG~~M~---aaG~e 272 (608)
T PRK01021 196 VNILCYGCGLFPSLANLRIAYKEARRKPFSNTSCFISAGEHSGDTLGGNLLKEIKALYPDIHCFGVGGPQMR---AEGFH 272 (608)
T ss_pred eEEEccccchhHHHHHHHHHHhhcccccccCCeEEEEeccccHHHHHHHHHHHHHhcCCCcEEEEEccHHHH---hCcCc
Confidence 33333455655544444221122 267888888887776554332 222223456888877543211 12222
Q ss_pred cc---cccchhhhHHHHHHHHHHHHHhHHHHHHHhhhCCCCEEEe-cC--CCccHHHHHHHhCC--CCC
Q 039991 112 NL---DAITNEVNKELIVKFFGATTKLQEPLEQLLRDHKPDCLVA-DI--FFPWATDAAAKFGI--PRL 172 (172)
Q Consensus 112 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~d~VI~-D~--~~~~a~~vA~~lgi--P~v 172 (172)
.. ++.+-.++.+.+..+.+ .......+.+.+++.+||++|. |. |....+.-+++.|+ |++
T Consensus 273 ~l~d~~eLsVmG~~EVL~~l~~-l~~~~~~l~~~i~~~kPD~vIlID~PgFNlrLAK~lkk~Gi~ipvi 340 (608)
T PRK01021 273 PLFNMEEFQVSGFWEVLLALFK-LWYRYRKLYKTILKTNPRTVICIDFPDFHFLLIKKLRKRGYKGKIV 340 (608)
T ss_pred ccCChHHhhhhhHHHHHHHHHH-HHHHHHHHHHHHHhcCCCEEEEeCCCCCCHHHHHHHHhcCCCCCEE
Confidence 21 11111100011111111 1123333444455568997766 86 33335567788885 753
No 74
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=83.99 E-value=12 Score=31.46 Aligned_cols=29 Identities=10% Similarity=0.214 Sum_probs=23.5
Q ss_pred eEEEEcCCCccchHHHHHHHHHHHHCCCE
Q 039991 37 HVFFFPFMAHGHMIPIVDMAKLFVTRGVK 65 (172)
Q Consensus 37 ~Ilv~p~p~~GH~~P~l~La~~La~rGh~ 65 (172)
.++=+-..+.|.+.-...|+++|.+++++
T Consensus 51 ~~iW~Ha~s~Ge~~~~~~l~~~l~~~~~~ 79 (425)
T PRK05749 51 PLIWFHAVSVGETRAAIPLIRALRKRYPD 79 (425)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHHHHhCCC
Confidence 44556667789999999999999998754
No 75
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=83.92 E-value=5.6 Score=30.21 Aligned_cols=48 Identities=13% Similarity=-0.047 Sum_probs=41.4
Q ss_pred cceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCChhhhhhhh
Q 039991 35 QLHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPANTPYVSKSV 82 (172)
Q Consensus 35 ~~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~~~~~ 82 (172)
..+|++.+.++-.|-....-++..|.++|++|+++......+.+...+
T Consensus 84 ~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~ 131 (197)
T TIGR02370 84 LGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKV 131 (197)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHH
Confidence 468999999999999999999999999999999999887665555444
No 76
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=83.56 E-value=1.8 Score=34.36 Aligned_cols=46 Identities=11% Similarity=0.148 Sum_probs=40.0
Q ss_pred cceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCChhhhhh
Q 039991 35 QLHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPANTPYVSK 80 (172)
Q Consensus 35 ~~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~~~ 80 (172)
..-++++..||.|--.-..++|.+|..+|++|+|++.+.....++.
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~ 150 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKA 150 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHH
Confidence 4578999999998888899999999988999999999977666654
No 77
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=83.19 E-value=2.4 Score=33.57 Aligned_cols=30 Identities=23% Similarity=0.328 Sum_probs=26.7
Q ss_pred CccchHHHHHHHHHHHHCCCEEEEEeCCCC
Q 039991 45 AHGHMIPIVDMAKLFVTRGVKASVITTPAN 74 (172)
Q Consensus 45 ~~GH~~P~l~La~~La~rGh~Vt~it~~~~ 74 (172)
..|+..-...|++.|+++||+|+++++...
T Consensus 13 ~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~ 42 (375)
T cd03821 13 YGGPVRVVLNLSKALAKLGHEVTVATTDAG 42 (375)
T ss_pred cCCeehHHHHHHHHHHhcCCcEEEEecCCC
Confidence 458999999999999999999999998754
No 78
>PLN02846 digalactosyldiacylglycerol synthase
Probab=83.18 E-value=2.1 Score=37.07 Aligned_cols=39 Identities=13% Similarity=0.135 Sum_probs=30.5
Q ss_pred cceEEEEcC---CCc-cchHHHHHHHHHHHHCC-CEEEEEeCCC
Q 039991 35 QLHVFFFPF---MAH-GHMIPIVDMAKLFVTRG-VKASVITTPA 73 (172)
Q Consensus 35 ~~~Ilv~p~---p~~-GH~~P~l~La~~La~rG-h~Vt~it~~~ 73 (172)
++||++++- |.. |=....+.++..|+++| |+|+++.+..
T Consensus 4 ~mrIaivTdt~lP~vnGva~s~~~~a~~L~~~G~heV~vvaP~~ 47 (462)
T PLN02846 4 KQHIAIFTTASLPWMTGTAVNPLFRAAYLAKDGDREVTLVIPWL 47 (462)
T ss_pred CCEEEEEEcCCCCCCCCeeccHHHHHHHHHhcCCcEEEEEecCC
Confidence 588888764 444 55477788888999999 8999999864
No 79
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=82.09 E-value=7.3 Score=31.62 Aligned_cols=31 Identities=10% Similarity=0.195 Sum_probs=24.9
Q ss_pred CCccchHHHHHHHHHHHHC-CCEEEEEeCCCC
Q 039991 44 MAHGHMIPIVDMAKLFVTR-GVKASVITTPAN 74 (172)
Q Consensus 44 p~~GH~~P~l~La~~La~r-Gh~Vt~it~~~~ 74 (172)
..+..+.-+.+|.++|.++ |+++.++.+...
T Consensus 7 gtr~~~~~~~pl~~~l~~~~~~~~~~~~tg~h 38 (363)
T cd03786 7 GTRPEYIKLAPLIRALKKDPGFELVLVVTGQH 38 (363)
T ss_pred ecCHHHHHHHHHHHHHhcCCCCCEEEEEeCCC
Confidence 4567888888899999987 999998777543
No 80
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=81.04 E-value=3.3 Score=29.06 Aligned_cols=38 Identities=8% Similarity=-0.125 Sum_probs=25.3
Q ss_pred eEEEEcCCCcc---chHHHHHHHHHHHHCCCEEEEEeCCCC
Q 039991 37 HVFFFPFMAHG---HMIPIVDMAKLFVTRGVKASVITTPAN 74 (172)
Q Consensus 37 ~Ilv~p~p~~G---H~~P~l~La~~La~rGh~Vt~it~~~~ 74 (172)
+|+|+--|-.+ .-.....|+++-++|||+|.++.+...
T Consensus 2 ki~fvmDpi~~i~~~kDTT~alm~eAq~RGhev~~~~~~dL 42 (119)
T PF02951_consen 2 KIAFVMDPIESIKPYKDTTFALMLEAQRRGHEVFYYEPGDL 42 (119)
T ss_dssp EEEEEES-GGG--TTT-HHHHHHHHHHHTT-EEEEE-GGGE
T ss_pred eEEEEeCCHHHCCCCCChHHHHHHHHHHCCCEEEEEEcCcE
Confidence 45555555443 335788999999999999999998753
No 81
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=80.93 E-value=2.3 Score=32.45 Aligned_cols=33 Identities=18% Similarity=0.273 Sum_probs=24.2
Q ss_pred ceEEEEcCCCc-cchHHHHHHHHHHHHCCCEEEEEeCCC
Q 039991 36 LHVFFFPFMAH-GHMIPIVDMAKLFVTRGVKASVITTPA 73 (172)
Q Consensus 36 ~~Ilv~p~p~~-GH~~P~l~La~~La~rGh~Vt~it~~~ 73 (172)
++|.++.-.|. |+ .|.++...|||+||-++-..
T Consensus 1 mKIaiIgAsG~~Gs-----~i~~EA~~RGHeVTAivRn~ 34 (211)
T COG2910 1 MKIAIIGASGKAGS-----RILKEALKRGHEVTAIVRNA 34 (211)
T ss_pred CeEEEEecCchhHH-----HHHHHHHhCCCeeEEEEeCh
Confidence 35777764444 44 57899999999999998553
No 82
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=80.66 E-value=8.4 Score=26.72 Aligned_cols=43 Identities=9% Similarity=0.013 Sum_probs=37.0
Q ss_pred eEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCChhhhh
Q 039991 37 HVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPANTPYVS 79 (172)
Q Consensus 37 ~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~~ 79 (172)
|+++.+.++-.|-.-..-++..|...|++|.++.+....+.+.
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~~ 43 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQTPEEIV 43 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHH
Confidence 5788899999999999999999999999999999886554443
No 83
>PRK00654 glgA glycogen synthase; Provisional
Probab=80.52 E-value=3.2 Score=35.61 Aligned_cols=27 Identities=15% Similarity=0.087 Sum_probs=22.6
Q ss_pred cchHHHHHHHHHHHHCCCEEEEEeCCC
Q 039991 47 GHMIPIVDMAKLFVTRGVKASVITTPA 73 (172)
Q Consensus 47 GH~~P~l~La~~La~rGh~Vt~it~~~ 73 (172)
|.=.-.-.|+++|+++||+|+++++..
T Consensus 18 Gl~~~v~~L~~~L~~~G~~V~v~~p~y 44 (466)
T PRK00654 18 GLGDVVGALPKALAALGHDVRVLLPGY 44 (466)
T ss_pred cHHHHHHHHHHHHHHCCCcEEEEecCC
Confidence 444667899999999999999999763
No 84
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=80.44 E-value=21 Score=30.98 Aligned_cols=49 Identities=4% Similarity=0.010 Sum_probs=42.2
Q ss_pred cceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCChhhhhhhhh
Q 039991 35 QLHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPANTPYVSKSVE 83 (172)
Q Consensus 35 ~~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~~~~~~ 83 (172)
..-+++...||.|--.-.++++.+.+.+|.++.+++.+...+++.....
T Consensus 263 gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~ 311 (484)
T TIGR02655 263 DSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAY 311 (484)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHH
Confidence 4567899999999999999999999999999999999988777655433
No 85
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=80.43 E-value=9 Score=29.57 Aligned_cols=49 Identities=6% Similarity=0.004 Sum_probs=41.7
Q ss_pred CcceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCChhhhhhhh
Q 039991 34 PQLHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPANTPYVSKSV 82 (172)
Q Consensus 34 ~~~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~~~~~ 82 (172)
...+|++.+.++-.|-....-++-.|.++|++|+++...-..+.+...+
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~~ 135 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILEAA 135 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHH
Confidence 3578999999999999999999999999999999999887655554443
No 86
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=80.29 E-value=3.2 Score=30.47 Aligned_cols=26 Identities=27% Similarity=0.501 Sum_probs=24.6
Q ss_pred CccchHHHHHHHHHHHHCCCEEEEEe
Q 039991 45 AHGHMIPIVDMAKLFVTRGVKASVIT 70 (172)
Q Consensus 45 ~~GH~~P~l~La~~La~rGh~Vt~it 70 (172)
..|+-.....|++.|.++||+|+++.
T Consensus 12 ~~G~~~~~~~l~~~L~~~g~~v~v~~ 37 (229)
T cd01635 12 GGGVELVLLDLAKALARRGHEVEVVA 37 (229)
T ss_pred CCCchhHHHHHHHHHHHcCCeEEEEE
Confidence 56999999999999999999999999
No 87
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=79.64 E-value=3.9 Score=31.85 Aligned_cols=30 Identities=13% Similarity=0.245 Sum_probs=26.5
Q ss_pred CccchHHHHHHHHHHHHCCCEEEEEeCCCC
Q 039991 45 AHGHMIPIVDMAKLFVTRGVKASVITTPAN 74 (172)
Q Consensus 45 ~~GH~~P~l~La~~La~rGh~Vt~it~~~~ 74 (172)
..|+-.-+..|++.|.+.||+|++++....
T Consensus 11 ~gG~~~~~~~l~~~l~~~g~~v~v~~~~~~ 40 (353)
T cd03811 11 GGGAERVLLNLANGLDKRGYDVTLVVLRDE 40 (353)
T ss_pred CCCcchhHHHHHHHHHhcCceEEEEEcCCC
Confidence 568888999999999999999999998754
No 88
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=79.47 E-value=1.4 Score=36.70 Aligned_cols=33 Identities=15% Similarity=0.287 Sum_probs=27.3
Q ss_pred EcCCCc-cchHHHHHHHHHHHHCCCEEEEEeCCCC
Q 039991 41 FPFMAH-GHMIPIVDMAKLFVTRGVKASVITTPAN 74 (172)
Q Consensus 41 ~p~p~~-GH~~P~l~La~~La~rGh~Vt~it~~~~ 74 (172)
+|+|-. |.-.=+..+++.|+++ |+|++++-...
T Consensus 8 ~P~P~~~G~~~r~~~~~~~L~~~-~~v~l~~~~~~ 41 (397)
T TIGR03087 8 IPYPPNKGDKIRSFHLLRHLAAR-HRVHLGTFVDD 41 (397)
T ss_pred CCCCCCCCCcEeHHHHHHHHHhc-CcEEEEEeCCC
Confidence 566666 8899999999999765 99999997653
No 89
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=79.06 E-value=3.9 Score=32.76 Aligned_cols=28 Identities=21% Similarity=0.309 Sum_probs=23.6
Q ss_pred cchHHHHHHHHHHHHCCCEEEEEeCCCC
Q 039991 47 GHMIPIVDMAKLFVTRGVKASVITTPAN 74 (172)
Q Consensus 47 GH~~P~l~La~~La~rGh~Vt~it~~~~ 74 (172)
|=-.-...|+++|.++||+|++++....
T Consensus 16 G~~~~~~~la~~L~~~g~~v~v~~~~~~ 43 (363)
T cd04955 16 GFETFVEELAPRLVARGHEVTVYCRSPY 43 (363)
T ss_pred cHHHHHHHHHHHHHhcCCCEEEEEccCC
Confidence 4446778999999999999999998744
No 90
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=77.80 E-value=4.9 Score=32.04 Aligned_cols=30 Identities=23% Similarity=0.366 Sum_probs=26.3
Q ss_pred CccchHHHHHHHHHHHHCCCEEEEEeCCCC
Q 039991 45 AHGHMIPIVDMAKLFVTRGVKASVITTPAN 74 (172)
Q Consensus 45 ~~GH~~P~l~La~~La~rGh~Vt~it~~~~ 74 (172)
..|.-.-...|++.|..+||+|+++++...
T Consensus 13 ~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~ 42 (357)
T cd03795 13 RGGIEQVIRDLAEGLAARGIEVAVLCASPE 42 (357)
T ss_pred CCcHHHHHHHHHHHHHhCCCceEEEecCCC
Confidence 458888889999999999999999998754
No 91
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=77.73 E-value=4 Score=28.63 Aligned_cols=41 Identities=12% Similarity=0.186 Sum_probs=29.4
Q ss_pred eEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCChhhh
Q 039991 37 HVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPANTPYV 78 (172)
Q Consensus 37 ~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~ 78 (172)
||++.-..+.+=+. ...+.++|.++|++|.++.++.....+
T Consensus 2 ~i~l~vtGs~~~~~-~~~~l~~L~~~g~~v~vv~S~~A~~~~ 42 (129)
T PF02441_consen 2 RILLGVTGSIAAYK-APDLLRRLKRAGWEVRVVLSPSAERFV 42 (129)
T ss_dssp EEEEEE-SSGGGGG-HHHHHHHHHTTTSEEEEEESHHHHHHS
T ss_pred EEEEEEECHHHHHH-HHHHHHHHhhCCCEEEEEECCcHHHHh
Confidence 55555544444444 999999999999999999988554333
No 92
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=77.40 E-value=5.4 Score=31.10 Aligned_cols=29 Identities=21% Similarity=0.407 Sum_probs=26.5
Q ss_pred ccchHHHHHHHHHHHHCCCEEEEEeCCCC
Q 039991 46 HGHMIPIVDMAKLFVTRGVKASVITTPAN 74 (172)
Q Consensus 46 ~GH~~P~l~La~~La~rGh~Vt~it~~~~ 74 (172)
.|+-.-+..|++.|.+.||+|++++....
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~i~~~~~~ 42 (374)
T cd03801 14 GGAERHVLELARALAARGHEVTVLTPGDG 42 (374)
T ss_pred CcHhHHHHHHHHHHHhcCceEEEEecCCC
Confidence 68899999999999999999999998754
No 93
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=77.13 E-value=32 Score=26.64 Aligned_cols=46 Identities=11% Similarity=-0.057 Sum_probs=38.5
Q ss_pred cceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCChhhhhh
Q 039991 35 QLHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPANTPYVSK 80 (172)
Q Consensus 35 ~~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~~~ 80 (172)
..-+++...||.|.-.-.++++.+-+.+|-.+.|++.+...+.+..
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~~~~i~~ 66 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEHPVQVRR 66 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCCHHHHHH
Confidence 4567899999999999999988887789999999999877655543
No 94
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=76.32 E-value=34 Score=29.30 Aligned_cols=96 Identities=13% Similarity=0.228 Sum_probs=59.1
Q ss_pred eEEEEcCCCccchHHHHHHHHHHHHC--CCEEEEEeCCCC-hhhhhhhhhhhhcCCCCeEEEEeeCCCCCCCCCCCCCcc
Q 039991 37 HVFFFPFMAHGHMIPIVDMAKLFVTR--GVKASVITTPAN-TPYVSKSVERANELGIEMDVKTVKFPSVEAGLPDGCENL 113 (172)
Q Consensus 37 ~Ilv~p~p~~GH~~P~l~La~~La~r--Gh~Vt~it~~~~-~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~p~~~~~~ 113 (172)
-.+-+-..+.|=.+-..+|.++|.++ ++++++-|.... .+..+.. .+..+....+|.+ +
T Consensus 50 p~vWiHaaSVGEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~------~~~~v~h~YlP~D-----~------- 111 (419)
T COG1519 50 PLVWIHAASVGEVLAALPLVRALRERFPDLRILVTTMTPTGAERAAAL------FGDSVIHQYLPLD-----L------- 111 (419)
T ss_pred CeEEEEecchhHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHH------cCCCeEEEecCcC-----c-------
Confidence 46666677889999999999999998 888888774433 3333332 2333444444421 0
Q ss_pred cccchhhhHHHHHHHHHHHHHhHHHHHHHhhhCCCC-EEEecCCCcc-HHHHHHHhCCCCC
Q 039991 114 DAITNEVNKELIVKFFGATTKLQEPLEQLLRDHKPD-CLVADIFFPW-ATDAAAKFGIPRL 172 (172)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~d-~VI~D~~~~~-a~~vA~~lgiP~v 172 (172)
+ ..+.++++..+|| +||.+.=+|. ...-+++.|+|.+
T Consensus 112 ---~-------------------~~v~rFl~~~~P~l~Ii~EtElWPnli~e~~~~~~p~~ 150 (419)
T COG1519 112 ---P-------------------IAVRRFLRKWRPKLLIIMETELWPNLINELKRRGIPLV 150 (419)
T ss_pred ---h-------------------HHHHHHHHhcCCCEEEEEeccccHHHHHHHHHcCCCEE
Confidence 0 1224566677888 4455543333 3466678888853
No 95
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=75.93 E-value=52 Score=28.47 Aligned_cols=44 Identities=16% Similarity=0.308 Sum_probs=39.2
Q ss_pred CcceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCChhh
Q 039991 34 PQLHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPANTPY 77 (172)
Q Consensus 34 ~~~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~ 77 (172)
++..|+++..-|.|--...-.||+.|..+|..|-+++.+.+..-
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpA 142 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPA 142 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChH
Confidence 35678899999999999999999999999999999999977543
No 96
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=75.67 E-value=27 Score=29.48 Aligned_cols=26 Identities=8% Similarity=-0.012 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHC--CCEEEEEeCCCCh
Q 039991 50 IPIVDMAKLFVTR--GVKASVITTPANT 75 (172)
Q Consensus 50 ~P~l~La~~La~r--Gh~Vt~it~~~~~ 75 (172)
--+...++.|.++ ||+|+++|+....
T Consensus 18 rvl~~a~~~l~~~~~~~~v~i~t~~~~~ 45 (419)
T cd03806 18 RVLWCAVRALQKRYPNNIVVIYTGDLDA 45 (419)
T ss_pred HHHHHHHHHHHHhCCCcEEEEECCCCCC
Confidence 4567788889888 8999999998654
No 97
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=75.16 E-value=7.1 Score=30.34 Aligned_cols=29 Identities=14% Similarity=0.297 Sum_probs=24.8
Q ss_pred ccchHHHHHHHHHHHHCCCEEEEEeCCCC
Q 039991 46 HGHMIPIVDMAKLFVTRGVKASVITTPAN 74 (172)
Q Consensus 46 ~GH~~P~l~La~~La~rGh~Vt~it~~~~ 74 (172)
.|.-.-+..|++.|+++||+|++++....
T Consensus 13 gG~~~~~~~l~~~L~~~g~~v~v~~~~~~ 41 (348)
T cd03820 13 GGAERVLSNLANALAEKGHEVTIISLDKG 41 (348)
T ss_pred CChHHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 45667788999999999999999998754
No 98
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=74.99 E-value=4.8 Score=31.43 Aligned_cols=27 Identities=11% Similarity=0.142 Sum_probs=21.0
Q ss_pred cchHHHHHHHHHHHHCCCEEEEEeCCC
Q 039991 47 GHMIPIVDMAKLFVTRGVKASVITTPA 73 (172)
Q Consensus 47 GH~~P~l~La~~La~rGh~Vt~it~~~ 73 (172)
-|+..|.+.|++|.++|++|+++....
T Consensus 46 l~~saMRhfa~~L~~~G~~V~Y~~~~~ 72 (224)
T PF04244_consen 46 LFFSAMRHFADELRAKGFRVHYIELDD 72 (224)
T ss_dssp HHHHHHHHHHHHHHHTT--EEEE-TT-
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence 367799999999999999999999884
No 99
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=74.19 E-value=32 Score=25.31 Aligned_cols=34 Identities=12% Similarity=0.156 Sum_probs=30.4
Q ss_pred ceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEE
Q 039991 36 LHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVI 69 (172)
Q Consensus 36 ~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~i 69 (172)
.-|.++..+|.|-....+.+|-+.+.+|++|.++
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~v 36 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHGYRVGVV 36 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 4577889999999999999999999999999993
No 100
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=72.52 E-value=7.7 Score=33.17 Aligned_cols=24 Identities=13% Similarity=0.108 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHCCCEEEEEeCCC
Q 039991 50 IPIVDMAKLFVTRGVKASVITTPA 73 (172)
Q Consensus 50 ~P~l~La~~La~rGh~Vt~it~~~ 73 (172)
.-.-.|+++|+++||+|.++++..
T Consensus 21 ~~v~~L~~aL~~~G~~v~v~~p~y 44 (473)
T TIGR02095 21 DVVGALPKALAALGHDVRVLLPAY 44 (473)
T ss_pred HHHHHHHHHHHHcCCeEEEEecCC
Confidence 566889999999999999999764
No 101
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=71.80 E-value=28 Score=23.49 Aligned_cols=45 Identities=9% Similarity=0.136 Sum_probs=36.2
Q ss_pred eEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCChhhhhhh
Q 039991 37 HVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPANTPYVSKS 81 (172)
Q Consensus 37 ~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~~~~ 81 (172)
++++...+..-|-.-+.-++..|.++||+|.++-.....+.+...
T Consensus 2 ~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~~~~~~~l~~~ 46 (121)
T PF02310_consen 2 RVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDANVPPEELVEA 46 (121)
T ss_dssp EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEESSB-HHHHHHH
T ss_pred EEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECCCCCHHHHHHH
Confidence 678888899999999999999999999999999766544444433
No 102
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=71.66 E-value=4.1 Score=33.66 Aligned_cols=28 Identities=21% Similarity=0.414 Sum_probs=24.3
Q ss_pred ccchHHHHHHHHHHHHCCCEEEEEeCCC
Q 039991 46 HGHMIPIVDMAKLFVTRGVKASVITTPA 73 (172)
Q Consensus 46 ~GH~~P~l~La~~La~rGh~Vt~it~~~ 73 (172)
.|--.-...|+++|+++||+|+++++..
T Consensus 20 GG~e~~v~~la~~L~~~G~~V~v~~~~~ 47 (405)
T TIGR03449 20 GGMNVYILETATELARRGIEVDIFTRAT 47 (405)
T ss_pred CCceehHHHHHHHHhhCCCEEEEEeccc
Confidence 4566788999999999999999999764
No 103
>PRK04328 hypothetical protein; Provisional
Probab=71.60 E-value=47 Score=26.02 Aligned_cols=46 Identities=11% Similarity=-0.051 Sum_probs=38.2
Q ss_pred cceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCChhhhhh
Q 039991 35 QLHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPANTPYVSK 80 (172)
Q Consensus 35 ~~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~~~ 80 (172)
..-+++...||.|--.-.++++.+-+.+|..+.+++.+...+.+..
T Consensus 23 gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee~~~~i~~ 68 (249)
T PRK04328 23 RNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEHPVQVRR 68 (249)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeCCHHHHHH
Confidence 4567889999999999899988888888999999999877665543
No 104
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=71.48 E-value=5 Score=30.32 Aligned_cols=32 Identities=22% Similarity=0.349 Sum_probs=20.9
Q ss_pred EcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCC
Q 039991 41 FPFMAHGHMIPIVDMAKLFVTRGVKASVITTPAN 74 (172)
Q Consensus 41 ~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~ 74 (172)
+..++.|.. -..||+++..+|++||+++.+..
T Consensus 23 ItN~SSG~~--G~~lA~~~~~~Ga~V~li~g~~~ 54 (185)
T PF04127_consen 23 ITNRSSGKM--GAALAEEAARRGAEVTLIHGPSS 54 (185)
T ss_dssp EEES--SHH--HHHHHHHHHHTT-EEEEEE-TTS
T ss_pred ecCCCcCHH--HHHHHHHHHHCCCEEEEEecCcc
Confidence 333444443 46789999999999999998853
No 105
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=71.29 E-value=4.4 Score=34.49 Aligned_cols=24 Identities=17% Similarity=0.115 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHCCCEEEEEeCCC
Q 039991 50 IPIVDMAKLFVTRGVKASVITTPA 73 (172)
Q Consensus 50 ~P~l~La~~La~rGh~Vt~it~~~ 73 (172)
.-.-.|+++|+++||+|+++++..
T Consensus 20 ~~~~~L~~aL~~~G~~V~Vi~p~y 43 (476)
T cd03791 20 DVVGALPKALAKLGHDVRVIMPKY 43 (476)
T ss_pred HHHHHHHHHHHHCCCeEEEEecCC
Confidence 456789999999999999999763
No 106
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=69.84 E-value=8.5 Score=32.06 Aligned_cols=40 Identities=23% Similarity=0.421 Sum_probs=29.8
Q ss_pred HHhHHHHHHHhhhCCCCEEEecCCCccH----------HHHHHHhCCCCC
Q 039991 133 TKLQEPLEQLLRDHKPDCLVADIFFPWA----------TDAAAKFGIPRL 172 (172)
Q Consensus 133 ~~~~~~l~~ll~~~~~d~VI~D~~~~~a----------~~vA~~lgiP~v 172 (172)
+.....+.+++++.+||+||+.+.+..+ ..+.+++|||.|
T Consensus 66 eea~~~i~~mv~~~~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~v 115 (349)
T PF07355_consen 66 EEALKKILEMVKKLKPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVV 115 (349)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEE
Confidence 3455666677888899999999876542 357789999975
No 107
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=69.31 E-value=15 Score=26.62 Aligned_cols=45 Identities=11% Similarity=0.050 Sum_probs=39.0
Q ss_pred CcceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCChhhh
Q 039991 34 PQLHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPANTPYV 78 (172)
Q Consensus 34 ~~~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~ 78 (172)
++++|++.+...-||=.-.--+++.|++.|++|.........+.+
T Consensus 11 ~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~ 55 (143)
T COG2185 11 ARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEEA 55 (143)
T ss_pred CCceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHHHH
Confidence 478999999887799999999999999999999998877665443
No 108
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=69.30 E-value=4.3 Score=31.84 Aligned_cols=24 Identities=17% Similarity=0.177 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHCCCEEEEEeCCC
Q 039991 50 IPIVDMAKLFVTRGVKASVITTPA 73 (172)
Q Consensus 50 ~P~l~La~~La~rGh~Vt~it~~~ 73 (172)
.-.-.|+++|+++||+|+++++.-
T Consensus 20 dv~~~L~kaL~~~G~~V~Vi~P~y 43 (245)
T PF08323_consen 20 DVVGSLPKALAKQGHDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEE-T
T ss_pred HHHHHHHHHHHhcCCeEEEEEccc
Confidence 567789999999999999999875
No 109
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=67.34 E-value=14 Score=29.31 Aligned_cols=26 Identities=8% Similarity=0.037 Sum_probs=21.9
Q ss_pred chHHHHHHHHHHHHCCCEEEEEeCCC
Q 039991 48 HMIPIVDMAKLFVTRGVKASVITTPA 73 (172)
Q Consensus 48 H~~P~l~La~~La~rGh~Vt~it~~~ 73 (172)
--.-+..+++.|.++||+|++++...
T Consensus 13 ~~~~~~~~~~~L~~~g~~v~v~~~~~ 38 (355)
T cd03799 13 SETFILREILALEAAGHEVEIFSLRP 38 (355)
T ss_pred chHHHHHHHHHHHhCCCeEEEEEecC
Confidence 34567899999999999999999764
No 110
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=67.34 E-value=11 Score=28.65 Aligned_cols=33 Identities=18% Similarity=0.310 Sum_probs=24.5
Q ss_pred CCCc-cch-HHHHHHHHHHHHCCCEEEEEeCCCCh
Q 039991 43 FMAH-GHM-IPIVDMAKLFVTRGVKASVITTPANT 75 (172)
Q Consensus 43 ~p~~-GH~-~P~l~La~~La~rGh~Vt~it~~~~~ 75 (172)
.|+. |=+ .-.-.|+..|+++||+||+.+.....
T Consensus 12 IPa~YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~~ 46 (185)
T PF09314_consen 12 IPARYGGFETFVEELAPRLVSKGIDVTVYCRSDYY 46 (185)
T ss_pred CCcccCcHHHHHHHHHHHHhcCCceEEEEEccCCC
Confidence 3443 666 45567888999999999999987553
No 111
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=66.99 E-value=11 Score=30.78 Aligned_cols=109 Identities=20% Similarity=0.143 Sum_probs=59.4
Q ss_pred eEEEEcCCCccchHHHHHHHHHHHHC-CCEEEEEeCCCChhhhhhhhhhhhcCCCCeEEEEeeCCCCCCCCCCCCCcccc
Q 039991 37 HVFFFPFMAHGHMIPIVDMAKLFVTR-GVKASVITTPANTPYVSKSVERANELGIEMDVKTVKFPSVEAGLPDGCENLDA 115 (172)
Q Consensus 37 ~Ilv~p~p~~GH~~P~l~La~~La~r-Gh~Vt~it~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~p~~~~~~~~ 115 (172)
+|+++. ..+.++.-+.++.++|.++ +.++.++.+......... +.+ ..++.. .++ +..+...
T Consensus 2 ~i~~~~-gtr~~~~~~~p~~~~l~~~~~~~~~~~~tg~h~~~~~~-~~~----~~~i~~-~~~-------~~~~~~~--- 64 (365)
T TIGR00236 2 KVSIVL-GTRPEAIKMAPLIRALKKYPEIDSYVIVTAQHREMLDQ-VLD----LFHLPP-DYD-------LNIMSPG--- 64 (365)
T ss_pred eEEEEE-ecCHHHHHHHHHHHHHhhCCCCCEEEEEeCCCHHHHHH-HHH----hcCCCC-Cee-------eecCCCC---
Confidence 455443 5679999999999999986 677777666644222221 111 011110 010 0000000
Q ss_pred cchhhhHHHHHHHHHHHHHhHHHHHHHhhhCCCCEEEec--CCC-ccHHHHHHHhCCCCC
Q 039991 116 ITNEVNKELIVKFFGATTKLQEPLEQLLRDHKPDCLVAD--IFF-PWATDAAAKFGIPRL 172 (172)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~d~VI~D--~~~-~~a~~vA~~lgiP~v 172 (172)
.. .... .......+.+++++.+||+|++- ... .++..+|..+|||++
T Consensus 65 ~~------~~~~----~~~~~~~l~~~l~~~~pDiv~~~gd~~~~la~a~aa~~~~ipv~ 114 (365)
T TIGR00236 65 QT------LGEI----TSNMLEGLEELLLEEKPDIVLVQGDTTTTLAGALAAFYLQIPVG 114 (365)
T ss_pred CC------HHHH----HHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHhCCCEE
Confidence 00 0111 11223556677888899988884 333 335788899999974
No 112
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=66.93 E-value=73 Score=26.45 Aligned_cols=98 Identities=15% Similarity=0.233 Sum_probs=58.1
Q ss_pred cchHHHHHHHHHHHHCCCEEEEEeCCCChhhhhhhhhhhhcCCCCeEEEEeeCCCCCCCCCCCCCcccccchhhhHHHHH
Q 039991 47 GHMIPIVDMAKLFVTRGVKASVITTPANTPYVSKSVERANELGIEMDVKTVKFPSVEAGLPDGCENLDAITNEVNKELIV 126 (172)
Q Consensus 47 GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 126 (172)
-|+.-+-.+.++|..+||+|-+-+-... .+...++. . ++.+..+. ..+... + -.
T Consensus 11 ~hvhfFk~lI~elekkG~ev~iT~rd~~--~v~~LLd~---y--gf~~~~Ig--------k~g~~t---l--------~~ 64 (346)
T COG1817 11 PHVHFFKNLIWELEKKGHEVLITCRDFG--VVTELLDL---Y--GFPYKSIG--------KHGGVT---L--------KE 64 (346)
T ss_pred chhhHHHHHHHHHHhCCeEEEEEEeecC--cHHHHHHH---h--CCCeEeec--------ccCCcc---H--------HH
Confidence 4666788999999999999988776532 12222211 1 35555542 111111 0 01
Q ss_pred HHHHHHHHhHHHHHHHhhhCCCCEEEecCCCccHHHHHHHhCCCCC
Q 039991 127 KFFGATTKLQEPLEQLLRDHKPDCLVADIFFPWATDAAAKFGIPRL 172 (172)
Q Consensus 127 ~~~~~~~~~~~~l~~ll~~~~~d~VI~D~~~~~a~~vA~~lgiP~v 172 (172)
.+.... .-.-.+-+++.+.+||+.+. -..+.+.-+|--+|+|.+
T Consensus 65 Kl~~~~-eR~~~L~ki~~~~kpdv~i~-~~s~~l~rvafgLg~psI 108 (346)
T COG1817 65 KLLESA-ERVYKLSKIIAEFKPDVAIG-KHSPELPRVAFGLGIPSI 108 (346)
T ss_pred HHHHHH-HHHHHHHHHHhhcCCceEee-cCCcchhhHHhhcCCceE
Confidence 111111 12234456777789999998 667778899999999864
No 113
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=65.79 E-value=8.9 Score=29.33 Aligned_cols=39 Identities=10% Similarity=0.086 Sum_probs=29.2
Q ss_pred ceEEEEcCCCccchHH-HHHHHHHHHHCCCEEEEEeCCCCh
Q 039991 36 LHVFFFPFMAHGHMIP-IVDMAKLFVTRGVKASVITTPANT 75 (172)
Q Consensus 36 ~~Ilv~p~p~~GH~~P-~l~La~~La~rGh~Vt~it~~~~~ 75 (172)
.+|++. ..|.+...- ...|+++|.++|++|.++.++...
T Consensus 6 k~Illg-VTGsiaa~k~a~~lir~L~k~G~~V~vv~T~aA~ 45 (196)
T PRK08305 6 KRIGFG-LTGSHCTYDEVMPEIEKLVDEGAEVTPIVSYTVQ 45 (196)
T ss_pred CEEEEE-EcCHHHHHHHHHHHHHHHHhCcCEEEEEECHhHH
Confidence 344433 345666666 699999999999999999988654
No 114
>PLN02316 synthase/transferase
Probab=65.27 E-value=18 Score=34.64 Aligned_cols=40 Identities=8% Similarity=0.200 Sum_probs=30.0
Q ss_pred cceEEEEc-----CCCccch-HHHHHHHHHHHHCCCEEEEEeCCCC
Q 039991 35 QLHVFFFP-----FMAHGHM-IPIVDMAKLFVTRGVKASVITTPAN 74 (172)
Q Consensus 35 ~~~Ilv~p-----~p~~GH~-~P~l~La~~La~rGh~Vt~it~~~~ 74 (172)
+++|+++. +.-.|-+ .-...|+++|+++||+|.++++...
T Consensus 587 pM~Il~VSsE~~P~aKvGGLgDVV~sLp~ALa~~Gh~V~VitP~Y~ 632 (1036)
T PLN02316 587 PMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLNHNVDIILPKYD 632 (1036)
T ss_pred CcEEEEEEcccCCCCCcCcHHHHHHHHHHHHHHcCCEEEEEecCCc
Confidence 57887654 3324555 4558899999999999999999743
No 115
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=65.07 E-value=25 Score=27.47 Aligned_cols=30 Identities=17% Similarity=0.100 Sum_probs=26.3
Q ss_pred CccchHHHHHHHHHHHHCCCEEEEEeCCCC
Q 039991 45 AHGHMIPIVDMAKLFVTRGVKASVITTPAN 74 (172)
Q Consensus 45 ~~GH~~P~l~La~~La~rGh~Vt~it~~~~ 74 (172)
..|.-.....|++.|.+.||+|.+++....
T Consensus 11 ~gG~~~~~~~l~~~l~~~~~~v~~~~~~~~ 40 (365)
T cd03807 11 VGGAERMLVRLLKGLDRDRFEHVVISLTDR 40 (365)
T ss_pred CccHHHHHHHHHHHhhhccceEEEEecCcc
Confidence 358999999999999999999999987644
No 116
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=64.67 E-value=8.3 Score=32.84 Aligned_cols=38 Identities=26% Similarity=0.473 Sum_probs=29.8
Q ss_pred cceEEEEcCC-Cc--cchHHHHHHHHHHHHCCCEEEEEeCCC
Q 039991 35 QLHVFFFPFM-AH--GHMIPIVDMAKLFVTRGVKASVITTPA 73 (172)
Q Consensus 35 ~~~Ilv~p~p-~~--GH~~P~l~La~~La~rGh~Vt~it~~~ 73 (172)
+..+.+=|.. .. ||+.|++.|. .|+..||+|+++....
T Consensus 34 ~~Y~GfDPTa~slHlGhlv~l~kL~-~fQ~aGh~~ivLigd~ 74 (401)
T COG0162 34 RVYIGFDPTAPSLHLGHLVPLMKLR-RFQDAGHKPIVLIGDA 74 (401)
T ss_pred eEEEeeCCCCCccchhhHHHHHHHH-HHHHCCCeEEEEeccc
Confidence 3566677766 33 9999999885 6999999999988764
No 117
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=63.99 E-value=9.8 Score=30.84 Aligned_cols=34 Identities=9% Similarity=0.045 Sum_probs=26.5
Q ss_pred cceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCC
Q 039991 35 QLHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPA 73 (172)
Q Consensus 35 ~~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~ 73 (172)
.++|+++...+.|= -+|..|++.||+|+++.-..
T Consensus 5 ~m~I~IiG~GaiG~-----~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 5 TPRIGIIGTGAIGG-----FYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred CcEEEEECCCHHHH-----HHHHHHHHCCCeEEEEEeCC
Confidence 47899997666564 36788999999999998653
No 118
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=62.90 E-value=14 Score=31.70 Aligned_cols=40 Identities=15% Similarity=0.341 Sum_probs=30.0
Q ss_pred HHhHHHHHHHhhhCCCCEEEecCCCccH----------HHHHHHhCCCCC
Q 039991 133 TKLQEPLEQLLRDHKPDCLVADIFFPWA----------TDAAAKFGIPRL 172 (172)
Q Consensus 133 ~~~~~~l~~ll~~~~~d~VI~D~~~~~a----------~~vA~~lgiP~v 172 (172)
+.....+.+++++.+||++|+...+..+ ..+.+++|||.+
T Consensus 62 eea~~~i~~mv~k~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~v 111 (431)
T TIGR01917 62 EEAKAKVLEMIKGANPDIFIAGPAFNAGRYGMAAGAITKAVQDELGIKAF 111 (431)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeE
Confidence 4455666778888899999999876542 256788999975
No 119
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=62.80 E-value=14 Score=31.66 Aligned_cols=40 Identities=20% Similarity=0.380 Sum_probs=29.9
Q ss_pred HHhHHHHHHHhhhCCCCEEEecCCCccH----------HHHHHHhCCCCC
Q 039991 133 TKLQEPLEQLLRDHKPDCLVADIFFPWA----------TDAAAKFGIPRL 172 (172)
Q Consensus 133 ~~~~~~l~~ll~~~~~d~VI~D~~~~~a----------~~vA~~lgiP~v 172 (172)
+.....+.+++++.+||++|+...+..+ ..+.+++|||.+
T Consensus 62 eea~~~i~~mv~k~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~v 111 (431)
T TIGR01918 62 EEAVARVLEMLKDKEPDIFIAGPAFNAGRYGVACGEICKVVQDKLNVPAV 111 (431)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeE
Confidence 4455666777888899999999876542 256788999975
No 120
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=62.78 E-value=15 Score=28.69 Aligned_cols=30 Identities=23% Similarity=0.365 Sum_probs=26.8
Q ss_pred CccchHHHHHHHHHHHHCCCEEEEEeCCCC
Q 039991 45 AHGHMIPIVDMAKLFVTRGVKASVITTPAN 74 (172)
Q Consensus 45 ~~GH~~P~l~La~~La~rGh~Vt~it~~~~ 74 (172)
..|+-.-+..+++.|.+.||+|++++....
T Consensus 13 ~~g~~~~~~~~~~~l~~~g~~v~v~~~~~~ 42 (377)
T cd03798 13 NGGGGIFVKELARALAKRGVEVTVLAPGPW 42 (377)
T ss_pred CchHHHHHHHHHHHHHHCCCceEEEecCCC
Confidence 468888999999999999999999998754
No 121
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=62.16 E-value=20 Score=22.94 Aligned_cols=36 Identities=11% Similarity=0.041 Sum_probs=27.8
Q ss_pred ceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeC
Q 039991 36 LHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITT 71 (172)
Q Consensus 36 ~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~ 71 (172)
.-++++.-....|..-+.++|+.|+++|..|...--
T Consensus 16 k~~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~~D~ 51 (79)
T PF12146_consen 16 KAVVVIVHGFGEHSGRYAHLAEFLAEQGYAVFAYDH 51 (79)
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 344555555569999999999999999999876543
No 122
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=62.08 E-value=16 Score=29.26 Aligned_cols=43 Identities=14% Similarity=0.149 Sum_probs=34.0
Q ss_pred CcceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCChh
Q 039991 34 PQLHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPANTP 76 (172)
Q Consensus 34 ~~~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~ 76 (172)
+..+|.+...||.|--.-.-.|++.|.++|++|-++..++.++
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp 70 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSP 70 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGG
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCC
Confidence 3567889999999999999999999999999999999886544
No 123
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=62.04 E-value=14 Score=30.29 Aligned_cols=43 Identities=16% Similarity=0.285 Sum_probs=38.1
Q ss_pred CcceEEEEcCCCccchHHHHHHHHHHHHC--CCEEEEEeCCCChh
Q 039991 34 PQLHVFFFPFMAHGHMIPIVDMAKLFVTR--GVKASVITTPANTP 76 (172)
Q Consensus 34 ~~~~Ilv~p~p~~GH~~P~l~La~~La~r--Gh~Vt~it~~~~~~ 76 (172)
.+.+|+++-..+.|.+.-..++.+.|.++ +.+|++++.+.+.+
T Consensus 4 ~~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~~ 48 (352)
T PRK10422 4 PFRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIP 48 (352)
T ss_pred CCceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChHH
Confidence 36789999999999999999999999987 99999999886644
No 124
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=62.00 E-value=11 Score=30.19 Aligned_cols=31 Identities=10% Similarity=0.085 Sum_probs=26.5
Q ss_pred CccchHHHHHHHHHHHHCCCEEEEEeCCCCh
Q 039991 45 AHGHMIPIVDMAKLFVTRGVKASVITTPANT 75 (172)
Q Consensus 45 ~~GH~~P~l~La~~La~rGh~Vt~it~~~~~ 75 (172)
..|.-.-...+++.|.++||+|++++.....
T Consensus 11 ~GG~~~~~~~l~~~L~~~~~~v~~i~~~~~~ 41 (358)
T cd03812 11 RGGIETFIMNYYRNLDRSKIQFDFLVTSKEE 41 (358)
T ss_pred CccHHHHHHHHHHhcCccceEEEEEEeCCCC
Confidence 4478888999999999999999999987543
No 125
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=61.89 E-value=40 Score=26.39 Aligned_cols=48 Identities=10% Similarity=-0.018 Sum_probs=42.1
Q ss_pred CcceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCChhhhhhh
Q 039991 34 PQLHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPANTPYVSKS 81 (172)
Q Consensus 34 ~~~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~~~~ 81 (172)
+..-+++...||.|.-.-..+++.+.+++|..|.+++.......+...
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l~~~ 69 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEELLEN 69 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHHHHHH
Confidence 356788999999999999999999999999999999999876665544
No 126
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=60.86 E-value=17 Score=28.95 Aligned_cols=27 Identities=11% Similarity=-0.047 Sum_probs=21.2
Q ss_pred CCCCEEEecCCCcc------HHHHHHHhCCCCC
Q 039991 146 HKPDCLVADIFFPW------ATDAAAKFGIPRL 172 (172)
Q Consensus 146 ~~~d~VI~D~~~~~------a~~vA~~lgiP~v 172 (172)
..||+|++-.-... +..+|+.||+|++
T Consensus 111 ~~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~v 143 (256)
T PRK03359 111 AGFDLILCGDGSSDLYAQQVGLLVGEILNIPAI 143 (256)
T ss_pred hCCCEEEEcCccccCCCCcHHHHHHHHhCCCce
Confidence 46999998765543 4689999999975
No 127
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=60.81 E-value=13 Score=29.10 Aligned_cols=36 Identities=8% Similarity=0.041 Sum_probs=31.8
Q ss_pred ceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeC
Q 039991 36 LHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITT 71 (172)
Q Consensus 36 ~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~ 71 (172)
+=|++-.+|+.|--.-.-+|+++|.+++|+|..++.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~k 37 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEK 37 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhhccccch
Confidence 346788899999999999999999999999987775
No 128
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=60.10 E-value=15 Score=27.55 Aligned_cols=42 Identities=17% Similarity=0.234 Sum_probs=29.9
Q ss_pred ceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCChhhh
Q 039991 36 LHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPANTPYV 78 (172)
Q Consensus 36 ~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~ 78 (172)
.+|++.-.. .+-..-...+.++|.++|++|.++.++.....+
T Consensus 2 k~Ill~vtG-siaa~~~~~li~~L~~~g~~V~vv~T~~A~~fi 43 (182)
T PRK07313 2 KNILLAVSG-SIAAYKAADLTSQLTKRGYQVTVLMTKAATKFI 43 (182)
T ss_pred CEEEEEEeC-hHHHHHHHHHHHHHHHCCCEEEEEEChhHHHHc
Confidence 345555434 444445899999999999999999988654433
No 129
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=59.79 E-value=36 Score=25.79 Aligned_cols=39 Identities=15% Similarity=0.206 Sum_probs=33.3
Q ss_pred eEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCCh
Q 039991 37 HVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPANT 75 (172)
Q Consensus 37 ~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~ 75 (172)
.|+++...|.|--.-...||..+..+|.+|.+++.+.+.
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R 41 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYR 41 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSS
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCC
Confidence 467888899999999999999999999999999998763
No 130
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=59.55 E-value=10 Score=28.96 Aligned_cols=26 Identities=19% Similarity=0.256 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHCCCEEEEEeCCCChh
Q 039991 51 PIVDMAKLFVTRGVKASVITTPANTP 76 (172)
Q Consensus 51 P~l~La~~La~rGh~Vt~it~~~~~~ 76 (172)
-+..|.+.|.+.||+|+++.+....+
T Consensus 15 Gi~aL~~~L~~~g~~V~VvAP~~~~S 40 (196)
T PF01975_consen 15 GIRALAKALSALGHDVVVVAPDSEQS 40 (196)
T ss_dssp HHHHHHHHHTTTSSEEEEEEESSSTT
T ss_pred HHHHHHHHHHhcCCeEEEEeCCCCCc
Confidence 46789999977789999999997643
No 131
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=58.17 E-value=9.9 Score=27.55 Aligned_cols=21 Identities=14% Similarity=0.260 Sum_probs=18.7
Q ss_pred HHHHHHHHHCCCEEEEEeCCC
Q 039991 53 VDMAKLFVTRGVKASVITTPA 73 (172)
Q Consensus 53 l~La~~La~rGh~Vt~it~~~ 73 (172)
..+|..|+++||+|++.+...
T Consensus 12 ~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 12 TALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp HHHHHHHHHCTEEEEEETSCH
T ss_pred HHHHHHHHHcCCEEEEEeccH
Confidence 378999999999999999874
No 132
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=58.14 E-value=35 Score=27.31 Aligned_cols=40 Identities=13% Similarity=0.157 Sum_probs=35.2
Q ss_pred cceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCC
Q 039991 35 QLHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPAN 74 (172)
Q Consensus 35 ~~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~ 74 (172)
...|+++..+|.|--.-...||..|+.+|.+|.++..+.+
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~ 111 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTF 111 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence 3466788888999999999999999999999999998864
No 133
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=57.51 E-value=17 Score=27.51 Aligned_cols=38 Identities=13% Similarity=0.136 Sum_probs=26.8
Q ss_pred eEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCC
Q 039991 37 HVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPAN 74 (172)
Q Consensus 37 ~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~ 74 (172)
+|++.-..+.|=+.-...+.++|.+.|++|+++.++..
T Consensus 2 ~I~lgITGs~~a~~a~~~ll~~L~~~g~~V~vI~S~~A 39 (187)
T TIGR02852 2 RIGFGLTGSHCTLEAVMPQLEKLVDEGAEVTPIVSETV 39 (187)
T ss_pred EEEEEEecHHHHHHHHHHHHHHHHhCcCEEEEEEchhH
Confidence 34444333444444446999999999999999998854
No 134
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=57.42 E-value=20 Score=22.54 Aligned_cols=24 Identities=13% Similarity=0.242 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHCCCEEEEEeCCCC
Q 039991 51 PIVDMAKLFVTRGVKASVITTPAN 74 (172)
Q Consensus 51 P~l~La~~La~rGh~Vt~it~~~~ 74 (172)
.-+++|..|+++|.+||++...+.
T Consensus 10 ig~E~A~~l~~~g~~vtli~~~~~ 33 (80)
T PF00070_consen 10 IGIELAEALAELGKEVTLIERSDR 33 (80)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSSS
T ss_pred HHHHHHHHHHHhCcEEEEEeccch
Confidence 468999999999999999997754
No 135
>PRK12342 hypothetical protein; Provisional
Probab=57.24 E-value=23 Score=28.17 Aligned_cols=27 Identities=11% Similarity=-0.160 Sum_probs=21.2
Q ss_pred CCCCEEEecCCCcc------HHHHHHHhCCCCC
Q 039991 146 HKPDCLVADIFFPW------ATDAAAKFGIPRL 172 (172)
Q Consensus 146 ~~~d~VI~D~~~~~------a~~vA~~lgiP~v 172 (172)
..||+|++..-... +..+|+.||+|++
T Consensus 108 ~~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~v 140 (254)
T PRK12342 108 IGFDLLLFGEGSGDLYAQQVGLLLGELLQLPVI 140 (254)
T ss_pred hCCCEEEEcCCcccCCCCCHHHHHHHHhCCCcE
Confidence 35999998755544 4799999999975
No 136
>PRK05973 replicative DNA helicase; Provisional
Probab=56.46 E-value=56 Score=25.69 Aligned_cols=46 Identities=15% Similarity=0.063 Sum_probs=39.2
Q ss_pred cceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCChhhhhh
Q 039991 35 QLHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPANTPYVSK 80 (172)
Q Consensus 35 ~~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~~~ 80 (172)
..-+++..-||.|--.-.++++...+.+|..|.|++.+.....+..
T Consensus 64 Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes~~~i~~ 109 (237)
T PRK05973 64 GDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYTEQDVRD 109 (237)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHH
Confidence 3467788899999999999999999999999999999977655543
No 137
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=56.34 E-value=22 Score=28.10 Aligned_cols=28 Identities=21% Similarity=0.298 Sum_probs=24.0
Q ss_pred ccchHHHHHHHHHHHHCCCEEEEEeCCC
Q 039991 46 HGHMIPIVDMAKLFVTRGVKASVITTPA 73 (172)
Q Consensus 46 ~GH~~P~l~La~~La~rGh~Vt~it~~~ 73 (172)
.|--.-...|+++|+++||+|++++...
T Consensus 13 gG~~~~~~~l~~~L~~~g~~v~v~~~~~ 40 (366)
T cd03822 13 CGIATFTTDLVNALSARGPDVLVVSVAA 40 (366)
T ss_pred CcHHHHHHHHHHHhhhcCCeEEEEEeec
Confidence 3666788999999999999999998764
No 138
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=55.82 E-value=48 Score=22.33 Aligned_cols=42 Identities=12% Similarity=-0.053 Sum_probs=33.4
Q ss_pred EEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCChhhhh
Q 039991 38 VFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPANTPYVS 79 (172)
Q Consensus 38 Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~~ 79 (172)
++....++..|-....-++..|.++|++|.++......+.+.
T Consensus 2 ~l~~~~~~~~h~lg~~~~~~~l~~~G~~v~~l~~~~~~~~~~ 43 (125)
T cd02065 2 VLGATVGGDVHDIGKNIVAIALRDNGFEVIDLGVDVPPEEIV 43 (125)
T ss_pred EEEEEcCCchhhHHHHHHHHHHHHCCCEEEEcCCCCCHHHHH
Confidence 456667788999999999999999999999998765444333
No 139
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=55.53 E-value=88 Score=26.55 Aligned_cols=60 Identities=8% Similarity=0.053 Sum_probs=43.5
Q ss_pred CcceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCChhhhhhhhhhhhcCCCCeEEEEeeC
Q 039991 34 PQLHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPANTPYVSKSVERANELGIEMDVKTVKF 99 (172)
Q Consensus 34 ~~~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~~~~~~~~~~~~~~i~~~~l~~ 99 (172)
++.|++++-..-.||---|.==|.-|+..|.+|+++.--.... ....+ .+++|+++.++.
T Consensus 11 ~k~ra~vvVLGDvGRSPRMqYHA~Sla~~gf~VdliGy~~s~p-~e~l~-----~hprI~ih~m~~ 70 (444)
T KOG2941|consen 11 KKKRAIVVVLGDVGRSPRMQYHALSLAKLGFQVDLIGYVESIP-LEELL-----NHPRIRIHGMPN 70 (444)
T ss_pred ccceEEEEEecccCCChHHHHHHHHHHHcCCeEEEEEecCCCC-hHHHh-----cCCceEEEeCCC
Confidence 4677777777788998888888999999999999998553311 11222 246899998863
No 140
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=54.73 E-value=1.1e+02 Score=24.29 Aligned_cols=102 Identities=21% Similarity=0.176 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHCC-CEEEEEeCCCChhhhhhhhhhhhcCCCCeEEEEeeCCCCCCCCCCCCCcccccchhhhHHHHHHH
Q 039991 50 IPIVDMAKLFVTRG-VKASVITTPANTPYVSKSVERANELGIEMDVKTVKFPSVEAGLPDGCENLDAITNEVNKELIVKF 128 (172)
Q Consensus 50 ~P~l~La~~La~rG-h~Vt~it~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 128 (172)
.-+-+.++.|.+.+ .+|-+.+....-..+.. . . ..+.++-++.+|.+....+++...--....
T Consensus 116 ~~~~eA~~~l~~~~~~~iflttGsk~L~~f~~-~-~--~~~~r~~~RvLp~~~~~~g~~~~~iia~~G------------ 179 (249)
T PF02571_consen 116 DSYEEAAELLKELGGGRIFLTTGSKNLPPFVP-A-P--LPGERLFARVLPTPESALGFPPKNIIAMQG------------ 179 (249)
T ss_pred CCHHHHHHHHhhcCCCCEEEeCchhhHHHHhh-c-c--cCCCEEEEEECCCccccCCCChhhEEEEeC------------
Confidence 46778888888887 55555555544333322 1 1 022345566676542211221110000000
Q ss_pred HHHHHHhHHHH-HHHhhhCCCCEEEecCCCccH----HHHHHHhCCCCC
Q 039991 129 FGATTKLQEPL-EQLLRDHKPDCLVADIFFPWA----TDAAAKFGIPRL 172 (172)
Q Consensus 129 ~~~~~~~~~~l-~~ll~~~~~d~VI~D~~~~~a----~~vA~~lgiP~v 172 (172)
-+...+ +.++++.+.|+||+=-....+ ...|.++|||++
T Consensus 180 -----Pfs~e~n~al~~~~~i~~lVtK~SG~~g~~eKi~AA~~lgi~vi 223 (249)
T PF02571_consen 180 -----PFSKELNRALFRQYGIDVLVTKESGGSGFDEKIEAARELGIPVI 223 (249)
T ss_pred -----CCCHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHHHHHcCCeEE
Confidence 111112 346777889999985433223 478899999874
No 141
>PRK09620 hypothetical protein; Provisional
Probab=54.66 E-value=14 Score=28.76 Aligned_cols=30 Identities=17% Similarity=0.203 Sum_probs=21.8
Q ss_pred EcCCCccchHHHHHHHHHHHHCCCEEEEEeCC
Q 039991 41 FPFMAHGHMIPIVDMAKLFVTRGVKASVITTP 72 (172)
Q Consensus 41 ~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~ 72 (172)
+...+.|.+- ..||++|..+|++|+++...
T Consensus 23 itN~SSGfiG--s~LA~~L~~~Ga~V~li~g~ 52 (229)
T PRK09620 23 HTNMAKGTIG--RIIAEELISKGAHVIYLHGY 52 (229)
T ss_pred ecCCCcCHHH--HHHHHHHHHCCCeEEEEeCC
Confidence 3333444443 67899999999999998864
No 142
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=54.56 E-value=24 Score=28.85 Aligned_cols=41 Identities=12% Similarity=0.156 Sum_probs=36.0
Q ss_pred ceEEEEcCCCccchHHHHHHHHHHHHC--CCEEEEEeCCCChh
Q 039991 36 LHVFFFPFMAHGHMIPIVDMAKLFVTR--GVKASVITTPANTP 76 (172)
Q Consensus 36 ~~Ilv~p~p~~GH~~P~l~La~~La~r--Gh~Vt~it~~~~~~ 76 (172)
++|+++-..+.|.+.-..++.+.|.++ +.+|++++.+...+
T Consensus 1 mrILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~~ 43 (348)
T PRK10916 1 MKILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRP 43 (348)
T ss_pred CcEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechhhHH
Confidence 368999999999999999999999995 99999999876544
No 143
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=54.53 E-value=33 Score=24.99 Aligned_cols=33 Identities=15% Similarity=0.185 Sum_probs=25.0
Q ss_pred cceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCC
Q 039991 35 QLHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTP 72 (172)
Q Consensus 35 ~~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~ 72 (172)
..+|+++ |.|.+ -...++.|.+.|++||++.+.
T Consensus 13 ~~~vlVv---GGG~v--a~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 13 NKVVVII---GGGKI--AYRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred CCEEEEE---CCCHH--HHHHHHHHHhCCCEEEEEcCc
Confidence 3567777 45554 377899999999999999644
No 144
>PRK07773 replicative DNA helicase; Validated
Probab=54.43 E-value=1.6e+02 Score=27.90 Aligned_cols=43 Identities=9% Similarity=0.080 Sum_probs=35.8
Q ss_pred eEEEEcCCCccchHHHHHHHHHHHHC-CCEEEEEeCCCChhhhh
Q 039991 37 HVFFFPFMAHGHMIPIVDMAKLFVTR-GVKASVITTPANTPYVS 79 (172)
Q Consensus 37 ~Ilv~p~p~~GH~~P~l~La~~La~r-Gh~Vt~it~~~~~~~~~ 79 (172)
=+++..-|+.|--.-.+.+|...+.+ |..|.+++.+....++.
T Consensus 219 livIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~~ql~ 262 (886)
T PRK07773 219 LIIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSKEQLV 262 (886)
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHH
Confidence 46788889999999999999999865 88999999887665543
No 145
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=53.92 E-value=28 Score=28.39 Aligned_cols=39 Identities=18% Similarity=0.305 Sum_probs=29.8
Q ss_pred eEEEEc-CCCccchHHHHHHHHHHHHCCCEEEEEeCCCCh
Q 039991 37 HVFFFP-FMAHGHMIPIVDMAKLFVTRGVKASVITTPANT 75 (172)
Q Consensus 37 ~Ilv~p-~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~ 75 (172)
++++|. =.|.|--.-...+|-.++++|++|-+++++..+
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~ 41 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAH 41 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTT
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCc
Confidence 445444 445588899999999999999999999988654
No 146
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=53.83 E-value=43 Score=23.03 Aligned_cols=37 Identities=11% Similarity=0.076 Sum_probs=33.1
Q ss_pred eEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCC
Q 039991 37 HVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPA 73 (172)
Q Consensus 37 ~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~ 73 (172)
||++..-++.|--.....|++.|+++|.+|.++....
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 4778888899999999999999999999999988876
No 147
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=53.46 E-value=57 Score=23.54 Aligned_cols=38 Identities=11% Similarity=0.245 Sum_probs=34.0
Q ss_pred EEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCCh
Q 039991 38 VFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPANT 75 (172)
Q Consensus 38 Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~ 75 (172)
+++...||.|--.....++..|+.+|.+|.++..+...
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~ 40 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYR 40 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Confidence 57788899999999999999999999999999988653
No 148
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=53.42 E-value=35 Score=29.34 Aligned_cols=41 Identities=15% Similarity=0.293 Sum_probs=36.6
Q ss_pred cceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCCh
Q 039991 35 QLHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPANT 75 (172)
Q Consensus 35 ~~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~ 75 (172)
+..|+++..+|.|--.-...||..|..+|++|.+++.+.+.
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R 140 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFR 140 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccc
Confidence 34677999999999999999999999999999999998764
No 149
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=53.37 E-value=41 Score=29.00 Aligned_cols=42 Identities=14% Similarity=0.401 Sum_probs=37.0
Q ss_pred cceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCChh
Q 039991 35 QLHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPANTP 76 (172)
Q Consensus 35 ~~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~ 76 (172)
+..|+++..+|.|--.-...||..|.++|++|.+++.+.+..
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~ 136 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRP 136 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCH
Confidence 456789999999999999999999999999999999887633
No 150
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=53.21 E-value=38 Score=26.72 Aligned_cols=47 Identities=15% Similarity=0.145 Sum_probs=29.3
Q ss_pred hcCCCCCCCcceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCC
Q 039991 26 KLNMGSEIPQLHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPA 73 (172)
Q Consensus 26 ~~~M~~~~~~~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~ 73 (172)
+.+|+..+.+..|++++..+.+.. -...++..|.++|++|..+.-+.
T Consensus 9 ~~~~~~~~~~p~vvliHG~~~~~~-~w~~~~~~L~~~g~~vi~~dl~g 55 (273)
T PLN02211 9 VTDMKPNRQPPHFVLIHGISGGSW-CWYKIRCLMENSGYKVTCIDLKS 55 (273)
T ss_pred cccccccCCCCeEEEECCCCCCcC-cHHHHHHHHHhCCCEEEEecccC
Confidence 344554334567777775554433 34667777888888887776543
No 151
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=52.63 E-value=45 Score=24.86 Aligned_cols=51 Identities=12% Similarity=0.128 Sum_probs=35.0
Q ss_pred hhhhcCCCCCCCcceEEEE-cCCCccchHHHHHHHHHHHHCCCEEEEEeCCCC
Q 039991 23 LIRKLNMGSEIPQLHVFFF-PFMAHGHMIPIVDMAKLFVTRGVKASVITTPAN 74 (172)
Q Consensus 23 ~~~~~~M~~~~~~~~Ilv~-p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~ 74 (172)
+|-.|...... ...|++. +-++.|--.-...||..|+++|++|.++-....
T Consensus 6 l~~~l~~~~~~-~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D~~ 57 (204)
T TIGR01007 6 IRTNIQFSGAE-IKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDMR 57 (204)
T ss_pred HHHHHhhhcCC-CcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 44455544322 3345555 344558888999999999999999998876644
No 152
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=52.19 E-value=63 Score=23.38 Aligned_cols=43 Identities=9% Similarity=-0.001 Sum_probs=36.8
Q ss_pred EEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCChhhhhh
Q 039991 38 VFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPANTPYVSK 80 (172)
Q Consensus 38 Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~~~ 80 (172)
+++...||.|--.-.++++...+..|..|.+++.+...+.+..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~ 44 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIE 44 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHH
Confidence 5778889999999999999999999999999999877655543
No 153
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=52.06 E-value=85 Score=25.10 Aligned_cols=33 Identities=27% Similarity=0.327 Sum_probs=25.0
Q ss_pred HHHhhhCCCCEEEecCCCcc-H----HHHHHHhCCCCC
Q 039991 140 EQLLRDHKPDCLVADIFFPW-A----TDAAAKFGIPRL 172 (172)
Q Consensus 140 ~~ll~~~~~d~VI~D~~~~~-a----~~vA~~lgiP~v 172 (172)
+.++++.+.|+||+=-.... + ...|.++|||+|
T Consensus 189 ~all~q~~id~vItK~SG~~Gg~~~Ki~aA~eLgi~VI 226 (257)
T COG2099 189 KALLEQYRIDVVVTKNSGGAGGTYEKIEAARELGIPVI 226 (257)
T ss_pred HHHHHHhCCCEEEEccCCcccCcHHHHHHHHHcCCcEE
Confidence 34778889999998754443 2 589999999975
No 154
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=52.02 E-value=21 Score=21.97 Aligned_cols=22 Identities=14% Similarity=0.244 Sum_probs=18.1
Q ss_pred HHHHHHHHHCCCEEEEEeCCCC
Q 039991 53 VDMAKLFVTRGVKASVITTPAN 74 (172)
Q Consensus 53 l~La~~La~rGh~Vt~it~~~~ 74 (172)
+..|..|+++|++|+++=....
T Consensus 9 l~aA~~L~~~g~~v~v~E~~~~ 30 (68)
T PF13450_consen 9 LAAAYYLAKAGYRVTVFEKNDR 30 (68)
T ss_dssp HHHHHHHHHTTSEEEEEESSSS
T ss_pred HHHHHHHHHCCCcEEEEecCcc
Confidence 5678899999999999986643
No 155
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=51.88 E-value=32 Score=28.55 Aligned_cols=112 Identities=15% Similarity=0.089 Sum_probs=59.2
Q ss_pred eEEEEcCCCccchHHHHHHHHHHHHC-CCEEEEEeCCCChh-hh---hhhhhhhhcCCCCeEEEEeeCCCCCCCCCCCCC
Q 039991 37 HVFFFPFMAHGHMIPIVDMAKLFVTR-GVKASVITTPANTP-YV---SKSVERANELGIEMDVKTVKFPSVEAGLPDGCE 111 (172)
Q Consensus 37 ~Ilv~p~p~~GH~~P~l~La~~La~r-Gh~Vt~it~~~~~~-~~---~~~~~~~~~~~~~i~~~~l~~~~~~~~~p~~~~ 111 (172)
+|+++. ..+.-+.-|.++.++|.+. ++++.++.+....+ .+ ...+.. .+ +... + ...-...
T Consensus 2 ki~~v~-GtRpe~iklapv~~~l~~~~~~~~~lv~tGqH~~~~~g~~~~~~~~---~~--~~~~--~------~~~~~~~ 67 (365)
T TIGR03568 2 KICVVT-GTRADYGLLRPLLKALQDDPDLELQLIVTGMHLSPEYGNTVNEIEK---DG--FDID--E------KIEILLD 67 (365)
T ss_pred eEEEEE-ecChhHHHHHHHHHHHhcCCCCcEEEEEeCCCCChhhccHHHHHHH---cC--CCCC--C------ccccccC
Confidence 444443 4678888999999999974 78888887764321 11 111110 01 1110 0 0000000
Q ss_pred cccccchhhhHHHHHHHHHHHHHhHHHHHHHhhhCCCCEEEecC--CC-ccHHHHHHHhCCCCC
Q 039991 112 NLDAITNEVNKELIVKFFGATTKLQEPLEQLLRDHKPDCLVADI--FF-PWATDAAAKFGIPRL 172 (172)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~d~VI~D~--~~-~~a~~vA~~lgiP~v 172 (172)
..+ ... ..+....+...+.+++.+.+||+|++=. +. ..++.+|..+|||++
T Consensus 68 ~~~-~~~---------~~~~~~~~~~~~~~~~~~~~Pd~vlv~GD~~~~la~alaA~~~~IPv~ 121 (365)
T TIGR03568 68 SDS-NAG---------MAKSMGLTIIGFSDAFERLKPDLVVVLGDRFEMLAAAIAAALLNIPIA 121 (365)
T ss_pred CCC-CCC---------HHHHHHHHHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHhCCcEE
Confidence 000 000 1111123445566777888999877643 33 345789999999974
No 156
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=51.85 E-value=16 Score=30.80 Aligned_cols=37 Identities=30% Similarity=0.484 Sum_probs=27.8
Q ss_pred ceEEEEcCC-Cc--cchHHHHHHHHHHHHCCCEEEEEeCCC
Q 039991 36 LHVFFFPFM-AH--GHMIPIVDMAKLFVTRGVKASVITTPA 73 (172)
Q Consensus 36 ~~Ilv~p~p-~~--GH~~P~l~La~~La~rGh~Vt~it~~~ 73 (172)
.-+.+=|.. .. ||+.|++.+ +.|++.||++.++....
T Consensus 33 vy~G~dPTg~~lHlGh~v~l~~l-~~lq~~G~~~~iligd~ 72 (377)
T TIGR00234 33 LYVGFDPTAPSLHLGHLVPLLKL-RDFQQAGHEVIVLLGDA 72 (377)
T ss_pred EEEeeCCCCCCccHHHHHHHHHH-HHHHHCCCcEEEEEecc
Confidence 445577766 33 999997665 68899999999987653
No 157
>PLN02939 transferase, transferring glycosyl groups
Probab=51.85 E-value=37 Score=32.31 Aligned_cols=41 Identities=15% Similarity=0.282 Sum_probs=31.3
Q ss_pred CCcceEEEE-----cCCCccch-HHHHHHHHHHHHCCCEEEEEeCCC
Q 039991 33 IPQLHVFFF-----PFMAHGHM-IPIVDMAKLFVTRGVKASVITTPA 73 (172)
Q Consensus 33 ~~~~~Ilv~-----p~p~~GH~-~P~l~La~~La~rGh~Vt~it~~~ 73 (172)
.+.++|+++ |+.-.|-+ .-.-.|.++|+++||+|.+++|..
T Consensus 479 ~~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~Y 525 (977)
T PLN02939 479 SSGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPKY 525 (977)
T ss_pred CCCCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 345788765 44545665 567789999999999999999964
No 158
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=51.50 E-value=19 Score=27.99 Aligned_cols=33 Identities=21% Similarity=0.238 Sum_probs=22.9
Q ss_pred EEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCC
Q 039991 38 VFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTP 72 (172)
Q Consensus 38 Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~ 72 (172)
|-++...+.|-+ -.+||++|+++|++|+++...
T Consensus 17 VR~itN~SSG~i--G~aLA~~L~~~G~~V~li~r~ 49 (229)
T PRK06732 17 VRGITNHSTGQL--GKIIAETFLAAGHEVTLVTTK 49 (229)
T ss_pred ceeecCccchHH--HHHHHHHHHhCCCEEEEEECc
Confidence 334444444433 367889999999999998743
No 159
>TIGR03264 met_CoM_red_C methyl-coenzyme M reductase I operon protein C. has several modified sites, so accessory proteins are expected. Several methanogens have encode two such enzymes, designated I and II; this protein occurs only operons of type I. The precise function is unknown.
Probab=51.39 E-value=21 Score=26.97 Aligned_cols=36 Identities=17% Similarity=0.245 Sum_probs=31.3
Q ss_pred eEEEEcCCCccch-HHHHHHHHHHHHCCCEEEEEeCC
Q 039991 37 HVFFFPFMAHGHM-IPIVDMAKLFVTRGVKASVITTP 72 (172)
Q Consensus 37 ~Ilv~p~p~~GH~-~P~l~La~~La~rGh~Vt~it~~ 72 (172)
-+++.++|++=|+ -|...++..|.+.|.++.++.-.
T Consensus 35 V~vVamSpgrrHitkpvCdIt~~LRr~Gi~ts~lvLn 71 (194)
T TIGR03264 35 VVAVAMSPGRRHITKPVCEITYALREAGIQTSVLVLN 71 (194)
T ss_pred EEEEecCcccccCCCcHHHHHHHHHHcCCccceEEEe
Confidence 5678999999999 69999999999999998777643
No 160
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=51.34 E-value=45 Score=26.19 Aligned_cols=51 Identities=16% Similarity=0.083 Sum_probs=33.4
Q ss_pred hhhhcCCCCCCCcceEEEE--cCCCccchHHHHHHHHHHHHCCCEEEEEeCCC
Q 039991 23 LIRKLNMGSEIPQLHVFFF--PFMAHGHMIPIVDMAKLFVTRGVKASVITTPA 73 (172)
Q Consensus 23 ~~~~~~M~~~~~~~~Ilv~--p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~ 73 (172)
+|..|.+....+..+++.+ +-+|.|--.-...||..|++.|.+|-++=...
T Consensus 90 l~~~l~~~~~~~~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllID~D~ 142 (274)
T TIGR03029 90 LRSQLMLRWFSEGRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDANL 142 (274)
T ss_pred HHHHhhhhccCCCCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCC
Confidence 3444443322223444433 34555888889999999999999999987653
No 161
>PRK08939 primosomal protein DnaI; Reviewed
Probab=51.17 E-value=22 Score=29.05 Aligned_cols=44 Identities=11% Similarity=0.264 Sum_probs=37.3
Q ss_pred ceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCChhhhh
Q 039991 36 LHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPANTPYVS 79 (172)
Q Consensus 36 ~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~~ 79 (172)
.-+++...+|.|--.-+.++|.+|+.+|..|++++.+.....++
T Consensus 157 ~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk 200 (306)
T PRK08939 157 KGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELK 200 (306)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHH
Confidence 46889999999998899999999999999999999875544444
No 162
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=50.80 E-value=52 Score=20.41 Aligned_cols=33 Identities=15% Similarity=0.187 Sum_probs=27.5
Q ss_pred EEEEcCCCccchHHHHHHHHHHHHCCCEEEEEe
Q 039991 38 VFFFPFMAHGHMIPIVDMAKLFVTRGVKASVIT 70 (172)
Q Consensus 38 Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it 70 (172)
+++...+|.|--.-...|++.|++.|++|.++.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 455566678888999999999999999998776
No 163
>PRK06835 DNA replication protein DnaC; Validated
Probab=50.52 E-value=24 Score=29.16 Aligned_cols=43 Identities=16% Similarity=0.159 Sum_probs=36.2
Q ss_pred ceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCChhhh
Q 039991 36 LHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPANTPYV 78 (172)
Q Consensus 36 ~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~ 78 (172)
..++++..+|.|--.-..++|++|..+|+.|.+++.......+
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l 226 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEIL 226 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHH
Confidence 5688999899988888899999999999999999987544433
No 164
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=50.37 E-value=25 Score=26.27 Aligned_cols=33 Identities=18% Similarity=0.185 Sum_probs=26.2
Q ss_pred CCccchHHHHHHHHHHHHCCCEEEEEeCCCChh
Q 039991 44 MAHGHMIPIVDMAKLFVTRGVKASVITTPANTP 76 (172)
Q Consensus 44 p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~ 76 (172)
.|.+...-...|.++|.++|++|.++.++....
T Consensus 8 tGs~~a~~~~~ll~~L~~~g~~V~vi~T~~A~~ 40 (177)
T TIGR02113 8 TGSIAAYKAADLTSQLTKLGYDVTVLMTQAATQ 40 (177)
T ss_pred cCHHHHHHHHHHHHHHHHCCCEEEEEEChHHHh
Confidence 355566677799999999999999999885433
No 165
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=50.37 E-value=1e+02 Score=22.81 Aligned_cols=31 Identities=16% Similarity=0.271 Sum_probs=21.8
Q ss_pred CCccchHHHHHHHHHH-HHC-CCEEEEEeCCCC
Q 039991 44 MAHGHMIPIVDMAKLF-VTR-GVKASVITTPAN 74 (172)
Q Consensus 44 p~~GH~~P~l~La~~L-a~r-Gh~Vt~it~~~~ 74 (172)
.+.||..=|+.|.+.+ .++ .++..+++..+.
T Consensus 6 gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d~ 38 (170)
T PF08660_consen 6 GSGGHTAEMLRLLKALDNDRYQPRTYIVTEGDK 38 (170)
T ss_pred cCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCCc
Confidence 4679999999999999 444 444445554443
No 166
>PRK14974 cell division protein FtsY; Provisional
Probab=49.99 E-value=51 Score=27.33 Aligned_cols=40 Identities=13% Similarity=0.213 Sum_probs=35.8
Q ss_pred cceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCC
Q 039991 35 QLHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPAN 74 (172)
Q Consensus 35 ~~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~ 74 (172)
+..|+++..+|.|--.-...||..|..+|++|.++++..+
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~ 179 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTF 179 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcC
Confidence 4578899999999999999999999999999999887754
No 167
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=49.50 E-value=44 Score=23.78 Aligned_cols=35 Identities=20% Similarity=0.167 Sum_probs=27.9
Q ss_pred ceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEe
Q 039991 36 LHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVIT 70 (172)
Q Consensus 36 ~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it 70 (172)
+.|.++.+...|--.-...|+++|.++|++|.++-
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik 35 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIK 35 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEE
Confidence 35778888888999999999999999999998544
No 168
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=49.48 E-value=26 Score=28.01 Aligned_cols=34 Identities=41% Similarity=0.606 Sum_probs=24.0
Q ss_pred HHHHHhhhCCCCEEEecCCCccH-------HHHHHHhCCCCC
Q 039991 138 PLEQLLRDHKPDCLVADIFFPWA-------TDAAAKFGIPRL 172 (172)
Q Consensus 138 ~l~~ll~~~~~d~VI~D~~~~~a-------~~vA~~lgiP~v 172 (172)
.+.+++++.+.| +|+|...+.| ..+|++.|||++
T Consensus 57 ~l~~~l~e~~i~-llIDATHPyAa~iS~Na~~aake~gipy~ 97 (257)
T COG2099 57 GLAAFLREEGID-LLIDATHPYAARISQNAARAAKETGIPYL 97 (257)
T ss_pred HHHHHHHHcCCC-EEEECCChHHHHHHHHHHHHHHHhCCcEE
Confidence 345667777777 5568777665 477889999974
No 169
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=49.42 E-value=65 Score=25.32 Aligned_cols=41 Identities=12% Similarity=0.101 Sum_probs=34.1
Q ss_pred eEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCChhh
Q 039991 37 HVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPANTPY 77 (172)
Q Consensus 37 ~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~ 77 (172)
-+++-.--+.|--.-..+++..+...|++|++++++.....
T Consensus 30 L~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~re 70 (235)
T COG2874 30 LILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVRE 70 (235)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhHHH
Confidence 45566666779999999999999999999999999976443
No 170
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=49.29 E-value=1.2e+02 Score=23.34 Aligned_cols=39 Identities=15% Similarity=0.143 Sum_probs=30.8
Q ss_pred ceEEEEcCCCc-cchHHHHHHHHHHHHCCCEEEEEeCCCC
Q 039991 36 LHVFFFPFMAH-GHMIPIVDMAKLFVTRGVKASVITTPAN 74 (172)
Q Consensus 36 ~~Ilv~p~p~~-GH~~P~l~La~~La~rGh~Vt~it~~~~ 74 (172)
..+-++..|.. |--.-+++-++....+|-+|.+.++.-.
T Consensus 4 g~l~~i~gpM~SGKT~eLl~r~~~~~~~g~~v~vfkp~iD 43 (201)
T COG1435 4 GWLEFIYGPMFSGKTEELLRRARRYKEAGMKVLVFKPAID 43 (201)
T ss_pred EEEEEEEccCcCcchHHHHHHHHHHHHcCCeEEEEecccc
Confidence 44555555554 8888999999999999999999998744
No 171
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=49.24 E-value=20 Score=30.42 Aligned_cols=31 Identities=10% Similarity=0.317 Sum_probs=23.2
Q ss_pred HHHHhhhCCCCEEEecCCCccHHHHHHHhCCCCC
Q 039991 139 LEQLLRDHKPDCLVADIFFPWATDAAAKFGIPRL 172 (172)
Q Consensus 139 l~~ll~~~~~d~VI~D~~~~~a~~vA~~lgiP~v 172 (172)
+++++++.+||++|.+. ....+|+++|+|.+
T Consensus 362 ~~~~i~~~~pdliig~~---~~~~~a~~~gip~~ 392 (430)
T cd01981 362 VGDMIARTEPELIFGTQ---MERHIGKRLDIPCA 392 (430)
T ss_pred HHHHHHhhCCCEEEecc---hhhHHHHHcCCCEE
Confidence 44456666899999987 34568999999963
No 172
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=49.14 E-value=29 Score=26.27 Aligned_cols=43 Identities=12% Similarity=0.087 Sum_probs=31.0
Q ss_pred ceEEEEcCCCccchHHHHHHHHHHHH-CCCEEEEEeCCCChhhhh
Q 039991 36 LHVFFFPFMAHGHMIPIVDMAKLFVT-RGVKASVITTPANTPYVS 79 (172)
Q Consensus 36 ~~Ilv~p~p~~GH~~P~l~La~~La~-rGh~Vt~it~~~~~~~~~ 79 (172)
.+|++.-..+.| ..-...|+++|.+ .|++|.++.++.....+.
T Consensus 2 k~IllgVTGsia-a~ka~~l~~~L~k~~g~~V~vv~T~~A~~fv~ 45 (185)
T PRK06029 2 KRLIVGISGASG-AIYGVRLLQVLRDVGEIETHLVISQAARQTLA 45 (185)
T ss_pred CEEEEEEECHHH-HHHHHHHHHHHHhhcCCeEEEEECHHHHHHHH
Confidence 355554444444 6679999999999 599999999986554443
No 173
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=48.75 E-value=24 Score=30.14 Aligned_cols=32 Identities=28% Similarity=0.544 Sum_probs=24.5
Q ss_pred HHHHHhhhCCCCEEEecCCCccHHHHHHHhCCCCC
Q 039991 138 PLEQLLRDHKPDCLVADIFFPWATDAAAKFGIPRL 172 (172)
Q Consensus 138 ~l~~ll~~~~~d~VI~D~~~~~a~~vA~~lgiP~v 172 (172)
.+++++++.++|++|.+.. ...+|+++|||.+
T Consensus 363 e~~~~l~~~~~dliiG~s~---~~~~a~~~~ip~~ 394 (429)
T cd03466 363 DIESYAKELKIDVLIGNSY---GRRIAEKLGIPLI 394 (429)
T ss_pred HHHHHHHhcCCCEEEECch---hHHHHHHcCCCEE
Confidence 4455566668999999864 5689999999974
No 174
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=48.72 E-value=20 Score=31.08 Aligned_cols=30 Identities=27% Similarity=0.411 Sum_probs=23.1
Q ss_pred HHHhhhCCCCEEEecCCCccHHHHHHHhCCCCC
Q 039991 140 EQLLRDHKPDCLVADIFFPWATDAAAKFGIPRL 172 (172)
Q Consensus 140 ~~ll~~~~~d~VI~D~~~~~a~~vA~~lgiP~v 172 (172)
.+++++.+||++|.. .+...+|+++|||++
T Consensus 386 ~~~i~~~~pDliig~---s~~~~~a~k~giP~~ 415 (475)
T PRK14478 386 YKMLKEAKADIMLSG---GRSQFIALKAGMPWL 415 (475)
T ss_pred HHHHhhcCCCEEEec---CchhhhhhhcCCCEE
Confidence 344555689999997 556789999999974
No 175
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=48.62 E-value=26 Score=23.58 Aligned_cols=28 Identities=18% Similarity=0.284 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHCCCEEEEEeCCCChhh
Q 039991 50 IPIVDMAKLFVTRGVKASVITTPANTPY 77 (172)
Q Consensus 50 ~P~l~La~~La~rGh~Vt~it~~~~~~~ 77 (172)
.|.+.|+++|.++|.+|.+.=+......
T Consensus 17 Sp~~~l~~~L~~~g~~V~~~DP~v~~~~ 44 (106)
T PF03720_consen 17 SPALELIEELKERGAEVSVYDPYVDEEE 44 (106)
T ss_dssp -HHHHHHHHHHHTT-EEEEE-TTSHHHH
T ss_pred CHHHHHHHHHHHCCCEEEEECCccChHH
Confidence 5999999999999999999888755433
No 176
>PRK05920 aromatic acid decarboxylase; Validated
Probab=48.50 E-value=26 Score=26.93 Aligned_cols=42 Identities=7% Similarity=0.068 Sum_probs=31.0
Q ss_pred ceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCChhhh
Q 039991 36 LHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPANTPYV 78 (172)
Q Consensus 36 ~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~ 78 (172)
.+|++.- .|.+...=...+.++|.+.|++|.++.+......+
T Consensus 4 krIllgI-TGsiaa~ka~~lvr~L~~~g~~V~vi~T~~A~~fv 45 (204)
T PRK05920 4 KRIVLAI-TGASGAIYGVRLLECLLAADYEVHLVISKAAQKVL 45 (204)
T ss_pred CEEEEEE-eCHHHHHHHHHHHHHHHHCCCEEEEEEChhHHHHH
Confidence 4454443 35555678999999999999999999998654433
No 177
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=48.30 E-value=51 Score=23.98 Aligned_cols=37 Identities=24% Similarity=0.235 Sum_probs=25.7
Q ss_pred HHHHHHHhhhCCCCEEEecCCCcc---HHHHHHHhCCCCC
Q 039991 136 QEPLEQLLRDHKPDCLVADIFFPW---ATDAAAKFGIPRL 172 (172)
Q Consensus 136 ~~~l~~ll~~~~~d~VI~D~~~~~---a~~vA~~lgiP~v 172 (172)
...+.+++++.+||+|+.-.-... +..+|.+||.|.+
T Consensus 72 a~al~~~i~~~~p~~Vl~~~t~~g~~la~rlAa~L~~~~v 111 (168)
T cd01715 72 APALVALAKKEKPSHILAGATSFGKDLAPRVAAKLDVGLI 111 (168)
T ss_pred HHHHHHHHHhcCCCEEEECCCccccchHHHHHHHhCCCce
Confidence 344455666667998888765433 5689999998864
No 178
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=47.85 E-value=39 Score=28.65 Aligned_cols=110 Identities=21% Similarity=0.215 Sum_probs=61.2
Q ss_pred ceEEEEcCCCccchHHHHHHHHHHHHCC-CEEEEEeCCCChh-hhhhhhhhhhcCCCCeEEEEeeCCCCCCCCCCC-CCc
Q 039991 36 LHVFFFPFMAHGHMIPIVDMAKLFVTRG-VKASVITTPANTP-YVSKSVERANELGIEMDVKTVKFPSVEAGLPDG-CEN 112 (172)
Q Consensus 36 ~~Ilv~p~p~~GH~~P~l~La~~La~rG-h~Vt~it~~~~~~-~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~p~~-~~~ 112 (172)
.+|+++ +..+=-++-|.+|.+++.+.+ .+..++.+....+ .+....- ....++. |+. ..-
T Consensus 4 ~Kv~~I-~GTRPE~iKmapli~~~~~~~~~~~~vi~TGQH~d~em~~~~l---------e~~~i~~-------pdy~L~i 66 (383)
T COG0381 4 LKVLTI-FGTRPEAIKMAPLVKALEKDPDFELIVIHTGQHRDYEMLDQVL---------ELFGIRK-------PDYDLNI 66 (383)
T ss_pred eEEEEE-EecCHHHHHHhHHHHHHHhCCCCceEEEEecccccHHHHHHHH---------HHhCCCC-------CCcchhc
Confidence 455543 346678899999999999986 7777777665431 2222111 1111110 110 000
Q ss_pred ccccchhhhHHHHHHHHHHHHHhHHHHHHHhhhCCCCEEEe--cCCCcc-HHHHHHHhCCCC
Q 039991 113 LDAITNEVNKELIVKFFGATTKLQEPLEQLLRDHKPDCLVA--DIFFPW-ATDAAAKFGIPR 171 (172)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~d~VI~--D~~~~~-a~~vA~~lgiP~ 171 (172)
..... .+.+........+.+++.+.+||+|++ |..... ++.+|-..+||+
T Consensus 67 ~~~~~---------tl~~~t~~~i~~~~~vl~~~kPD~VlVhGDT~t~lA~alaa~~~~IpV 119 (383)
T COG0381 67 MKPGQ---------TLGEITGNIIEGLSKVLEEEKPDLVLVHGDTNTTLAGALAAFYLKIPV 119 (383)
T ss_pred cccCC---------CHHHHHHHHHHHHHHHHHhhCCCEEEEeCCcchHHHHHHHHHHhCCce
Confidence 00000 112222355567778888889997776 544433 478888999996
No 179
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=47.50 E-value=23 Score=31.16 Aligned_cols=30 Identities=10% Similarity=0.319 Sum_probs=23.1
Q ss_pred HHHHhhhCCCCEEEecCCCccHHHHHHHhCCCC
Q 039991 139 LEQLLRDHKPDCLVADIFFPWATDAAAKFGIPR 171 (172)
Q Consensus 139 l~~ll~~~~~d~VI~D~~~~~a~~vA~~lgiP~ 171 (172)
+++++++.+||+||.+. +...+|+++|||+
T Consensus 366 i~~~I~~~~pdliiGs~---~er~ia~~lgiP~ 395 (513)
T CHL00076 366 VGDMIARVEPSAIFGTQ---MERHIGKRLDIPC 395 (513)
T ss_pred HHHHHHhcCCCEEEECc---hhhHHHHHhCCCE
Confidence 34456666899999987 4556799999997
No 180
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=47.42 E-value=27 Score=26.18 Aligned_cols=33 Identities=12% Similarity=0.222 Sum_probs=25.1
Q ss_pred CccchHHHHHHHHHHHHCCCEEEEEeCCCChhhh
Q 039991 45 AHGHMIPIVDMAKLFVTRGVKASVITTPANTPYV 78 (172)
Q Consensus 45 ~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~ 78 (172)
+.|-+ -...|.++|.++|++|.++.++.....+
T Consensus 9 siaa~-ka~~lir~L~~~g~~V~vv~T~~A~~fv 41 (181)
T TIGR00421 9 ASGVI-YGIRLLEVLKEAGVEVHLVISDWAKETI 41 (181)
T ss_pred HHHHH-HHHHHHHHHHHCCCEEEEEECccHHHHH
Confidence 33444 4588999999999999999998665443
No 181
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=47.27 E-value=31 Score=27.71 Aligned_cols=42 Identities=10% Similarity=0.088 Sum_probs=36.2
Q ss_pred eEEEEcCCCccchHHHHHHHHHHHHC--CCEEEEEeCCCChhhh
Q 039991 37 HVFFFPFMAHGHMIPIVDMAKLFVTR--GVKASVITTPANTPYV 78 (172)
Q Consensus 37 ~Ilv~p~p~~GH~~P~l~La~~La~r--Gh~Vt~it~~~~~~~~ 78 (172)
+|+++-..+.|.+.-..++.+.|.++ +.+||+++.+.+.+.+
T Consensus 1 ~ILiir~~~iGD~vl~~p~l~~Lr~~~P~a~I~~l~~~~~~~~~ 44 (319)
T TIGR02193 1 RILIVKTSSLGDVIHTLPALTDIKRALPDVEIDWVVEEGFADIV 44 (319)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHhCCCCEEEEEEChhHhhhh
Confidence 58888888899999999999999997 9999999987664433
No 182
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=47.17 E-value=15 Score=27.42 Aligned_cols=34 Identities=29% Similarity=0.392 Sum_probs=21.2
Q ss_pred HHHHHHhhhC-CCCEEEecCCCccH--HHHHHHhCCC
Q 039991 137 EPLEQLLRDH-KPDCLVADIFFPWA--TDAAAKFGIP 170 (172)
Q Consensus 137 ~~l~~ll~~~-~~d~VI~D~~~~~a--~~vA~~lgiP 170 (172)
+.++.+++.. ++.-+|.|+|++.| +.+|.++|-.
T Consensus 179 ~l~~~lI~~~t~~gdiVlDpF~GSGTT~~aa~~l~R~ 215 (231)
T PF01555_consen 179 ELIERLIKASTNPGDIVLDPFAGSGTTAVAAEELGRR 215 (231)
T ss_dssp HHHHHHHHHHS-TT-EEEETT-TTTHHHHHHHHTT-E
T ss_pred HHHHHHHHhhhccceeeehhhhccChHHHHHHHcCCe
Confidence 4455565543 66778999999886 5788888743
No 183
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=47.04 E-value=57 Score=25.98 Aligned_cols=39 Identities=21% Similarity=0.165 Sum_probs=29.9
Q ss_pred ceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCChh
Q 039991 36 LHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPANTP 76 (172)
Q Consensus 36 ~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~ 76 (172)
.+++++. +-.=+.|++.+++.|+++|.+|+++......+
T Consensus 99 ~~~llIa--GGiGiaPl~~l~~~l~~~~~~v~l~~g~r~~~ 137 (281)
T PRK06222 99 GTVVCVG--GGVGIAPVYPIAKALKEAGNKVITIIGARNKD 137 (281)
T ss_pred CeEEEEe--CcCcHHHHHHHHHHHHHCCCeEEEEEecCCHH
Confidence 3566665 44458899999999999999999887765543
No 184
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=46.99 E-value=45 Score=22.38 Aligned_cols=35 Identities=14% Similarity=0.275 Sum_probs=25.7
Q ss_pred HHHHHhhhCCCCEEEecCCCccHH--HHHHHhCCCCC
Q 039991 138 PLEQLLRDHKPDCLVADIFFPWAT--DAAAKFGIPRL 172 (172)
Q Consensus 138 ~l~~ll~~~~~d~VI~D~~~~~a~--~vA~~lgiP~v 172 (172)
.+.+++++..+|+||.|.-..+.+ .+.+.+|++++
T Consensus 48 ei~~~~~~~~~d~vvfd~~Lsp~Q~rNLe~~~~~~V~ 84 (95)
T PF13167_consen 48 EIKELIEELDADLVVFDNELSPSQQRNLEKALGVKVI 84 (95)
T ss_pred HHHHHHhhcCCCEEEECCCCCHHHHHHHHHHHCCeee
Confidence 344555566899999998777764 88888888763
No 185
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=46.93 E-value=51 Score=23.90 Aligned_cols=35 Identities=17% Similarity=0.207 Sum_probs=30.1
Q ss_pred EEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCC
Q 039991 38 VFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTP 72 (172)
Q Consensus 38 Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~ 72 (172)
|.++.+.+.|--.-+..|+++|..+|++|.++-..
T Consensus 2 i~i~G~~gsGKTtl~~~l~~~l~~~G~~V~viK~~ 36 (155)
T TIGR00176 2 LQIVGPKNSGKTTLIERLVKALKARGYRVATIKHD 36 (155)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 46777888899899999999999999999998653
No 186
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=46.67 E-value=62 Score=23.93 Aligned_cols=33 Identities=15% Similarity=0.189 Sum_probs=25.3
Q ss_pred ceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCC
Q 039991 36 LHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPA 73 (172)
Q Consensus 36 ~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~ 73 (172)
-.++++. +-|.+.| |+.+|.++|.+|.+++.+.
T Consensus 107 D~~vLvS--gD~DF~~---Lv~~lre~G~~V~v~g~~~ 139 (160)
T TIGR00288 107 DAVALVT--RDADFLP---VINKAKENGKETIVIGAEP 139 (160)
T ss_pred CEEEEEe--ccHhHHH---HHHHHHHCCCEEEEEeCCC
Confidence 3566665 7788765 6678888999999999764
No 187
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=46.14 E-value=1e+02 Score=23.35 Aligned_cols=60 Identities=17% Similarity=0.098 Sum_probs=39.8
Q ss_pred EEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCC---hhhhhhhhhhhhcCCCCeEEEEee
Q 039991 38 VFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPAN---TPYVSKSVERANELGIEMDVKTVK 98 (172)
Q Consensus 38 Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~---~~~~~~~~~~~~~~~~~i~~~~l~ 98 (172)
|+|+..++.-|=--+..++++|...|.+|.+++-... .+.+....+... .+.+=+++.+|
T Consensus 111 vi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~~G~~~~~~~~l~~~~~~~~-~~~~s~~~~~~ 173 (187)
T cd01452 111 VAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINFGEIDDNTEKLTAFIDAVN-GKDGSHLVSVP 173 (187)
T ss_pred EEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEEeCCCCCCHHHHHHHHHHhc-CCCCceEEEeC
Confidence 7788888788876777999999999999999886543 333444333321 12234566664
No 188
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=46.07 E-value=54 Score=20.89 Aligned_cols=36 Identities=11% Similarity=0.083 Sum_probs=27.4
Q ss_pred ceEEEEcCCCc--cchHHHHHHHHHHHHCCCEEEEEeC
Q 039991 36 LHVFFFPFMAH--GHMIPIVDMAKLFVTRGVKASVITT 71 (172)
Q Consensus 36 ~~Ilv~p~p~~--GH~~P~l~La~~La~rGh~Vt~it~ 71 (172)
-.++++|.... .+..-...++..|.+.|.+|.+-..
T Consensus 2 ~qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~d~~ 39 (94)
T cd00861 2 FDVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLLDDR 39 (94)
T ss_pred eEEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEEECC
Confidence 35788886643 4667788999999999999988543
No 189
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=46.05 E-value=28 Score=29.86 Aligned_cols=32 Identities=22% Similarity=0.347 Sum_probs=24.0
Q ss_pred HHHHHhhhCCCCEEEecCCCccHHHHHHHhCCCCC
Q 039991 138 PLEQLLRDHKPDCLVADIFFPWATDAAAKFGIPRL 172 (172)
Q Consensus 138 ~l~~ll~~~~~d~VI~D~~~~~a~~vA~~lgiP~v 172 (172)
.+++++++.++|++|... ++..+|+++|||++
T Consensus 364 ~l~~~i~~~~~dliig~s---~~k~~A~~l~ip~i 395 (432)
T TIGR01285 364 DLEDLACAAGADLLITNS---HGRALAQRLALPLV 395 (432)
T ss_pred HHHHHHhhcCCCEEEECc---chHHHHHHcCCCEE
Confidence 445556666899999775 35789999999974
No 190
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=45.85 E-value=22 Score=31.00 Aligned_cols=38 Identities=18% Similarity=0.297 Sum_probs=29.7
Q ss_pred ceEEEEcCCCccchHHH------------HHHHHHHHHCCCEEEEEeCCC
Q 039991 36 LHVFFFPFMAHGHMIPI------------VDMAKLFVTRGVKASVITTPA 73 (172)
Q Consensus 36 ~~Ilv~p~p~~GH~~P~------------l~La~~La~rGh~Vt~it~~~ 73 (172)
.+|++...|..--+.|. ..||+++..+|++||+++.+.
T Consensus 257 kkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~ 306 (475)
T PRK13982 257 RRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPV 306 (475)
T ss_pred CEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCc
Confidence 56777777766666654 578999999999999999653
No 191
>PLN02206 UDP-glucuronate decarboxylase
Probab=45.64 E-value=45 Score=28.57 Aligned_cols=43 Identities=19% Similarity=0.233 Sum_probs=30.7
Q ss_pred hhhcCCCCCCCcceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEe
Q 039991 24 IRKLNMGSEIPQLHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVIT 70 (172)
Q Consensus 24 ~~~~~M~~~~~~~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it 70 (172)
-.+++|+-+.+.++|+|.. +.|++- ..|+++|.++|++|..+.
T Consensus 108 ~~~~~~~~~~~~~kILVTG--atGfIG--s~Lv~~Ll~~G~~V~~ld 150 (442)
T PLN02206 108 GGKIPLGLKRKGLRVVVTG--GAGFVG--SHLVDRLMARGDSVIVVD 150 (442)
T ss_pred CCcCccccccCCCEEEEEC--cccHHH--HHHHHHHHHCcCEEEEEe
Confidence 3566677544567888886 445553 457889999999999875
No 192
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=45.55 E-value=26 Score=30.72 Aligned_cols=32 Identities=13% Similarity=0.265 Sum_probs=23.9
Q ss_pred HHHHHhhhCCCCEEEecCCCccHHHHHHHhCCCCC
Q 039991 138 PLEQLLRDHKPDCLVADIFFPWATDAAAKFGIPRL 172 (172)
Q Consensus 138 ~l~~ll~~~~~d~VI~D~~~~~a~~vA~~lgiP~v 172 (172)
.+++.+++.+||+||.+. ....+|+++|||++
T Consensus 355 ei~~~i~~~~pdliiG~~---~er~~a~~lgip~~ 386 (511)
T TIGR01278 355 EVADAIAALEPELVLGTQ---MERHSAKRLDIPCG 386 (511)
T ss_pred HHHHHHHhcCCCEEEECh---HHHHHHHHcCCCEE
Confidence 344455666899999987 45678999999964
No 193
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=45.44 E-value=56 Score=24.01 Aligned_cols=35 Identities=31% Similarity=0.494 Sum_probs=24.5
Q ss_pred HHHHHhhhCCCCEEEecCCCcc---HHHHHHHhCCCCC
Q 039991 138 PLEQLLRDHKPDCLVADIFFPW---ATDAAAKFGIPRL 172 (172)
Q Consensus 138 ~l~~ll~~~~~d~VI~D~~~~~---a~~vA~~lgiP~v 172 (172)
.+.+++++.+||+|+.-.-... +..+|.+||.|.+
T Consensus 82 ~l~~~i~~~~p~~Vl~g~t~~g~~la~rlA~~L~~~~v 119 (181)
T cd01985 82 ALAALIKKEKPDLILAGATSIGKQLAPRVAALLGVPQI 119 (181)
T ss_pred HHHHHHHHhCCCEEEECCcccccCHHHHHHHHhCCCcc
Confidence 3344555567998888765543 5699999998864
No 194
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=45.44 E-value=89 Score=23.41 Aligned_cols=40 Identities=10% Similarity=0.130 Sum_probs=28.1
Q ss_pred eEEEEcCCCccchHHHHHHHHHHHHC--CCEEEEEeCCCChh
Q 039991 37 HVFFFPFMAHGHMIPIVDMAKLFVTR--GVKASVITTPANTP 76 (172)
Q Consensus 37 ~Ilv~p~p~~GH~~P~l~La~~La~r--Gh~Vt~it~~~~~~ 76 (172)
.++-+-..+.|=++-..+|+++|.++ |++|.+-++.....
T Consensus 22 ~~iWiHa~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~ 63 (186)
T PF04413_consen 22 PLIWIHAASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGR 63 (186)
T ss_dssp T-EEEE-SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHH
T ss_pred CcEEEEECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchH
Confidence 44545557789999999999999987 89988888765543
No 195
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=45.31 E-value=27 Score=29.72 Aligned_cols=31 Identities=29% Similarity=0.469 Sum_probs=23.4
Q ss_pred HHHHhhhCCCCEEEecCCCccHHHHHHHhCCCCC
Q 039991 139 LEQLLRDHKPDCLVADIFFPWATDAAAKFGIPRL 172 (172)
Q Consensus 139 l~~ll~~~~~d~VI~D~~~~~a~~vA~~lgiP~v 172 (172)
+++++++.+||++|.+.. ...+|+++|+|++
T Consensus 363 l~~~i~~~~pdliig~~~---~~~~a~~~~ip~i 393 (428)
T cd01965 363 LESLAKEEPVDLLIGNSH---GRYLARDLGIPLV 393 (428)
T ss_pred HHHHhhccCCCEEEECch---hHHHHHhcCCCEE
Confidence 344455568999999974 4689999999974
No 196
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=45.28 E-value=70 Score=24.36 Aligned_cols=38 Identities=18% Similarity=0.090 Sum_probs=34.2
Q ss_pred cceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCC
Q 039991 35 QLHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTP 72 (172)
Q Consensus 35 ~~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~ 72 (172)
+..|.++..+|.|-....+.+|-+.+.+|++|.++---
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFl 59 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFI 59 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 46889999999999999999999999999999988644
No 197
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=45.13 E-value=87 Score=24.65 Aligned_cols=40 Identities=20% Similarity=0.386 Sum_probs=32.4
Q ss_pred EEEEcCC-CccchHHHHHHHHHHHHCCCEEEEEeCCCChhh
Q 039991 38 VFFFPFM-AHGHMIPIVDMAKLFVTRGVKASVITTPANTPY 77 (172)
Q Consensus 38 Ilv~p~p-~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~ 77 (172)
|.+...- |.|--.-.+.||-+|+++|-+|+++=.+++.+.
T Consensus 4 Itf~s~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl 44 (231)
T PF07015_consen 4 ITFASSKGGAGKTTAAMALASELAARGARVALIDADPNQPL 44 (231)
T ss_pred EEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcH
Confidence 4444443 449999999999999999999999999988653
No 198
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=45.06 E-value=26 Score=29.87 Aligned_cols=31 Identities=32% Similarity=0.465 Sum_probs=24.3
Q ss_pred HHHHHhhhCCCCEEEecCCCccHHHHHHHhCCCC
Q 039991 138 PLEQLLRDHKPDCLVADIFFPWATDAAAKFGIPR 171 (172)
Q Consensus 138 ~l~~ll~~~~~d~VI~D~~~~~a~~vA~~lgiP~ 171 (172)
.+++++++.+||++|.... ...+|+++|||.
T Consensus 360 e~~~~i~~~~pDliig~~~---~~~~a~k~giP~ 390 (421)
T cd01976 360 ELEEFVKRLKPDLIGSGIK---EKYVFQKMGIPF 390 (421)
T ss_pred HHHHHHHHhCCCEEEecCc---chhhhhhcCCCe
Confidence 4445666679999998875 567899999996
No 199
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=45.05 E-value=35 Score=26.98 Aligned_cols=35 Identities=9% Similarity=0.133 Sum_probs=25.4
Q ss_pred cceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCC
Q 039991 35 QLHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPAN 74 (172)
Q Consensus 35 ~~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~ 74 (172)
+++|+++...+-| ..|++.|.++|++|++.+....
T Consensus 2 ~~~IlvlgGT~eg-----r~la~~L~~~g~~v~~Svat~~ 36 (248)
T PRK08057 2 MPRILLLGGTSEA-----RALARALAAAGVDIVLSLAGRT 36 (248)
T ss_pred CceEEEEechHHH-----HHHHHHHHhCCCeEEEEEccCC
Confidence 3567777655555 4689999999998888776644
No 200
>PRK10867 signal recognition particle protein; Provisional
Probab=44.51 E-value=79 Score=27.25 Aligned_cols=42 Identities=12% Similarity=0.207 Sum_probs=36.8
Q ss_pred cceEEEEcCCCccchHHHHHHHHHHHHC-CCEEEEEeCCCChh
Q 039991 35 QLHVFFFPFMAHGHMIPIVDMAKLFVTR-GVKASVITTPANTP 76 (172)
Q Consensus 35 ~~~Ilv~p~p~~GH~~P~l~La~~La~r-Gh~Vt~it~~~~~~ 76 (172)
+..|+++..+|.|--.-...||..|+.+ |.+|.+++.+.+..
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~ 142 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRP 142 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccch
Confidence 3467788999999999999999999999 99999999987644
No 201
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=44.50 E-value=49 Score=24.87 Aligned_cols=39 Identities=18% Similarity=0.305 Sum_probs=34.9
Q ss_pred cceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCC
Q 039991 35 QLHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPA 73 (172)
Q Consensus 35 ~~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~ 73 (172)
.++|.+-..||.|--.-...++..|.++|+.|-=+.++.
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~E 43 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPE 43 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeee
Confidence 579999999999999999999999999999987666553
No 202
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=44.49 E-value=65 Score=23.88 Aligned_cols=40 Identities=15% Similarity=0.154 Sum_probs=32.1
Q ss_pred cceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCC
Q 039991 35 QLHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPAN 74 (172)
Q Consensus 35 ~~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~ 74 (172)
...++++..+|.|--.-...+++++..+|+.|.|++....
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L 86 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDL 86 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCce
Confidence 4578999999998888899999999999999999987644
No 203
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=44.46 E-value=1.3e+02 Score=22.44 Aligned_cols=35 Identities=20% Similarity=0.153 Sum_probs=30.7
Q ss_pred cceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEE
Q 039991 35 QLHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVI 69 (172)
Q Consensus 35 ~~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~i 69 (172)
+.-|.++..+|.|-..-.+.+|-+.+.+|++|.++
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~iv 39 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVI 39 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEE
Confidence 35677888899999999999999999999999655
No 204
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=44.28 E-value=29 Score=30.48 Aligned_cols=32 Identities=19% Similarity=0.429 Sum_probs=23.5
Q ss_pred HHHHHhhhCCCCEEEecCCCccHHHHHHHhCCCCC
Q 039991 138 PLEQLLRDHKPDCLVADIFFPWATDAAAKFGIPRL 172 (172)
Q Consensus 138 ~l~~ll~~~~~d~VI~D~~~~~a~~vA~~lgiP~v 172 (172)
.+++.+++.+||+||.+. ....+|+++|||++
T Consensus 353 el~~~i~~~~PdliiG~~---~er~~a~~lgiP~~ 384 (519)
T PRK02910 353 EVEDAIAEAAPELVLGTQ---MERHSAKRLGIPCA 384 (519)
T ss_pred HHHHHHHhcCCCEEEEcc---hHHHHHHHcCCCEE
Confidence 344455666899999876 35679999999963
No 205
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=44.27 E-value=66 Score=24.40 Aligned_cols=37 Identities=16% Similarity=0.052 Sum_probs=33.9
Q ss_pred ceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCC
Q 039991 36 LHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTP 72 (172)
Q Consensus 36 ~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~ 72 (172)
.-+.+...||.|.-.-.++++...+..|..|.|++++
T Consensus 24 ~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 24 TITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 4567999999999999999999999999999999998
No 206
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=44.13 E-value=49 Score=28.06 Aligned_cols=33 Identities=18% Similarity=0.242 Sum_probs=25.3
Q ss_pred ceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCC
Q 039991 36 LHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPA 73 (172)
Q Consensus 36 ~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~ 73 (172)
.+++++ |.|+ .- +.+|+.|+++|++|+++....
T Consensus 6 k~v~ii---G~g~-~G-~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 6 KKVLVV---GAGV-SG-LALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CEEEEE---CCCH-HH-HHHHHHHHHCCCEEEEEeCCc
Confidence 456666 5666 34 499999999999999987754
No 207
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=44.09 E-value=38 Score=27.33 Aligned_cols=40 Identities=8% Similarity=0.114 Sum_probs=35.4
Q ss_pred ceEEEEcCCCccchHHHHHHHHHHHHC--CCEEEEEeCCCCh
Q 039991 36 LHVFFFPFMAHGHMIPIVDMAKLFVTR--GVKASVITTPANT 75 (172)
Q Consensus 36 ~~Ilv~p~p~~GH~~P~l~La~~La~r--Gh~Vt~it~~~~~ 75 (172)
++|+++-..+.|.+.-..++.+.|.++ +.+||+++.+.+.
T Consensus 1 m~ILii~~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~~~~ 42 (322)
T PRK10964 1 MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEEGFA 42 (322)
T ss_pred CeEEEEeccchHHHHhHHHHHHHHHHhCCCCEEEEEECHHHH
Confidence 479999999999999999999999986 9999999987543
No 208
>PLN02778 3,5-epimerase/4-reductase
Probab=43.92 E-value=43 Score=26.80 Aligned_cols=33 Identities=12% Similarity=0.115 Sum_probs=22.7
Q ss_pred CcceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEe
Q 039991 34 PQLHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVIT 70 (172)
Q Consensus 34 ~~~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it 70 (172)
..++|++....|. +- ..|++.|.++||+|++..
T Consensus 8 ~~~kiLVtG~tGf--iG--~~l~~~L~~~g~~V~~~~ 40 (298)
T PLN02778 8 ATLKFLIYGKTGW--IG--GLLGKLCQEQGIDFHYGS 40 (298)
T ss_pred CCCeEEEECCCCH--HH--HHHHHHHHhCCCEEEEec
Confidence 3468888874444 32 247788999999998654
No 209
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=43.86 E-value=57 Score=25.29 Aligned_cols=41 Identities=15% Similarity=0.205 Sum_probs=31.4
Q ss_pred CcceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCC
Q 039991 34 PQLHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPAN 74 (172)
Q Consensus 34 ~~~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~ 74 (172)
.+.+|.+-..||.|--.-|+.=|++|.++|.+|.+-..+..
T Consensus 4 GrLkIflG~apGVGKTy~ML~ea~~l~~~G~DVViG~veth 44 (211)
T PF02702_consen 4 GRLKIFLGAAPGVGKTYAMLQEAHRLKEQGVDVVIGYVETH 44 (211)
T ss_dssp --EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEE---T
T ss_pred ccEEEEEecCCCCCHHHHHHHHHHHHHHCCCCEEEEEecCC
Confidence 35788899999999999999999999999999998766644
No 210
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=43.86 E-value=1.4e+02 Score=22.56 Aligned_cols=47 Identities=11% Similarity=-0.011 Sum_probs=38.0
Q ss_pred cceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCChhhhhhh
Q 039991 35 QLHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPANTPYVSKS 81 (172)
Q Consensus 35 ~~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~~~~ 81 (172)
..-+++...||.|--.-.++++..-+.+|..|.+++.+...+.+...
T Consensus 16 g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l~~~ 62 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERILGY 62 (224)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHH
Confidence 34566788889999888999999888899999999999776555443
No 211
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=43.84 E-value=33 Score=27.17 Aligned_cols=31 Identities=6% Similarity=0.111 Sum_probs=22.9
Q ss_pred eEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCC
Q 039991 37 HVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTP 72 (172)
Q Consensus 37 ~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~ 72 (172)
+|+++.. |.+- ..+|..|++.||+|+++...
T Consensus 2 ~I~IiG~---G~~G--~~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 2 KIAILGA---GAIG--GLFGAALAQAGHDVTLVARR 32 (304)
T ss_pred EEEEECC---CHHH--HHHHHHHHhCCCeEEEEECC
Confidence 5677754 4433 56788899999999999863
No 212
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=43.81 E-value=53 Score=25.70 Aligned_cols=37 Identities=14% Similarity=0.109 Sum_probs=30.5
Q ss_pred eEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCC
Q 039991 37 HVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPA 73 (172)
Q Consensus 37 ~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~ 73 (172)
.|.+..=.|.|.-.-...||..|+++|.+|-++=...
T Consensus 2 ~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD~Dp 38 (267)
T cd02032 2 VLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGCDP 38 (267)
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEecCC
Confidence 4566665677999999999999999999999886553
No 213
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=43.61 E-value=55 Score=25.58 Aligned_cols=37 Identities=11% Similarity=0.085 Sum_probs=29.5
Q ss_pred eEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCC
Q 039991 37 HVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPA 73 (172)
Q Consensus 37 ~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~ 73 (172)
+|.++.=.|.|--.-...||..|+++|++|-++=...
T Consensus 2 ~i~~~gKGGVGKTT~~~nLA~~La~~g~rVLliD~D~ 38 (268)
T TIGR01281 2 ILAVYGKGGIGKSTTSSNLSVAFAKLGKRVLQIGCDP 38 (268)
T ss_pred EEEEEcCCcCcHHHHHHHHHHHHHhCCCeEEEEecCc
Confidence 4666655566888999999999999999999885443
No 214
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=43.59 E-value=39 Score=26.34 Aligned_cols=37 Identities=16% Similarity=0.268 Sum_probs=28.6
Q ss_pred cCCCccch-HHHHHHHHHHHHC--CCEEEEEeCCCChhhh
Q 039991 42 PFMAHGHM-IPIVDMAKLFVTR--GVKASVITTPANTPYV 78 (172)
Q Consensus 42 p~p~~GH~-~P~l~La~~La~r--Gh~Vt~it~~~~~~~~ 78 (172)
...|.|+. .=...|.++|.++ |++|.++.++.....+
T Consensus 5 ~itGs~~~~~~~~~l~~~L~~~~~g~~V~vv~T~~a~~~i 44 (234)
T TIGR02700 5 GITGAGHLLVESFQVMKELKREIEELRVSTFVSRAGEEVV 44 (234)
T ss_pred EEeCccHhHHHHHHHHHHHHhhcCCCeEEEEEChhHHhHH
Confidence 33465666 6889999999999 9999999988654433
No 215
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=43.43 E-value=65 Score=23.78 Aligned_cols=38 Identities=11% Similarity=0.197 Sum_probs=32.6
Q ss_pred ceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCC
Q 039991 36 LHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPA 73 (172)
Q Consensus 36 ~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~ 73 (172)
+-+.++.+-..|--.-+-+|.++|..||++|.++-...
T Consensus 3 ~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH~h 40 (161)
T COG1763 3 KILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVKHAH 40 (161)
T ss_pred cEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEEecC
Confidence 45568888888999999999999999999999887553
No 216
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=43.24 E-value=76 Score=25.39 Aligned_cols=39 Identities=23% Similarity=0.251 Sum_probs=33.8
Q ss_pred ceEEEEcCCCccchHHHHHHHHHHHHC-C-CEEEEEeCCCC
Q 039991 36 LHVFFFPFMAHGHMIPIVDMAKLFVTR-G-VKASVITTPAN 74 (172)
Q Consensus 36 ~~Ilv~p~p~~GH~~P~l~La~~La~r-G-h~Vt~it~~~~ 74 (172)
..|+++...|.|--.-...||..++.+ | ++|.+++.+.+
T Consensus 195 ~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~ 235 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTY 235 (282)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCcc
Confidence 467788888889999999999999987 5 99999998865
No 217
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=43.00 E-value=70 Score=27.59 Aligned_cols=40 Identities=18% Similarity=0.143 Sum_probs=36.2
Q ss_pred cceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCC
Q 039991 35 QLHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPAN 74 (172)
Q Consensus 35 ~~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~ 74 (172)
...|+++...|.|--.-...||..|..+|.+|.+++++.+
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~ 280 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHS 280 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCc
Confidence 3578899989999999999999999999999999998765
No 218
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=42.92 E-value=61 Score=21.86 Aligned_cols=30 Identities=17% Similarity=0.356 Sum_probs=26.4
Q ss_pred CccchHHHHHHHHHHHHCCCEEEEEeCCCC
Q 039991 45 AHGHMIPIVDMAKLFVTRGVKASVITTPAN 74 (172)
Q Consensus 45 ~~GH~~P~l~La~~La~rGh~Vt~it~~~~ 74 (172)
..|.-..+.+.++.+.++|..|..+|....
T Consensus 62 ~sg~~~~~~~~~~~ak~~g~~vi~iT~~~~ 91 (131)
T PF01380_consen 62 YSGETRELIELLRFAKERGAPVILITSNSE 91 (131)
T ss_dssp SSSTTHHHHHHHHHHHHTTSEEEEEESSTT
T ss_pred ccccchhhhhhhHHHHhcCCeEEEEeCCCC
Confidence 668889999999999999999988887755
No 219
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=42.83 E-value=1e+02 Score=26.54 Aligned_cols=42 Identities=12% Similarity=0.203 Sum_probs=36.1
Q ss_pred cceEEEEcCCCccchHHHHHHHHHHH-HCCCEEEEEeCCCChh
Q 039991 35 QLHVFFFPFMAHGHMIPIVDMAKLFV-TRGVKASVITTPANTP 76 (172)
Q Consensus 35 ~~~Ilv~p~p~~GH~~P~l~La~~La-~rGh~Vt~it~~~~~~ 76 (172)
+..++++..+|.|--.-...||..|. .+|.+|.+++.+.+..
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~ 141 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRP 141 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccch
Confidence 34677899999999999999999997 5899999999987644
No 220
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=42.80 E-value=58 Score=28.11 Aligned_cols=45 Identities=11% Similarity=0.082 Sum_probs=39.6
Q ss_pred cceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCChhhhhh
Q 039991 35 QLHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPANTPYVSK 80 (172)
Q Consensus 35 ~~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~~~ 80 (172)
..-|++-.-||.|--.-+++++..|+++| +|-|++.+....+++-
T Consensus 93 Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES~~Qikl 137 (456)
T COG1066 93 GSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEESLQQIKL 137 (456)
T ss_pred ccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCcCHHHHHH
Confidence 35688889999999999999999999999 9999999987766553
No 221
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=42.62 E-value=28 Score=27.67 Aligned_cols=30 Identities=10% Similarity=0.104 Sum_probs=22.4
Q ss_pred eEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeC
Q 039991 37 HVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITT 71 (172)
Q Consensus 37 ~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~ 71 (172)
+|+++...+.| ..+|..|++.||+|+++..
T Consensus 2 kI~IiG~G~iG-----~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVG-----GTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHH-----HHHHHHHHHCCCceEEEec
Confidence 57777544444 3478889999999999986
No 222
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=42.43 E-value=55 Score=24.48 Aligned_cols=32 Identities=9% Similarity=0.186 Sum_probs=21.1
Q ss_pred ceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCC
Q 039991 36 LHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTP 72 (172)
Q Consensus 36 ~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~ 72 (172)
++|.++ |.||+- +.+|-.|+++||+|+.+-..
T Consensus 1 M~I~Vi---GlGyvG--l~~A~~lA~~G~~V~g~D~~ 32 (185)
T PF03721_consen 1 MKIAVI---GLGYVG--LPLAAALAEKGHQVIGVDID 32 (185)
T ss_dssp -EEEEE-----STTH--HHHHHHHHHTTSEEEEE-S-
T ss_pred CEEEEE---CCCcch--HHHHHHHHhCCCEEEEEeCC
Confidence 356666 677774 55667799999999998765
No 223
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=42.35 E-value=56 Score=24.45 Aligned_cols=35 Identities=6% Similarity=-0.090 Sum_probs=25.7
Q ss_pred eEEEEcCCC----ccchHHHHHHHHHHHHCCCEEEEEeC
Q 039991 37 HVFFFPFMA----HGHMIPIVDMAKLFVTRGVKASVITT 71 (172)
Q Consensus 37 ~Ilv~p~p~----~GH~~P~l~La~~La~rGh~Vt~it~ 71 (172)
+|+++.... ..+..-..+|++.|+++||.+.+=..
T Consensus 2 ~i~V~~~s~~~~~~~~~~~A~~lG~~la~~g~~lV~GGg 40 (178)
T TIGR00730 2 TVCVYCGSSPGGNAAYKELAAELGAYLAGQGWGLVYGGG 40 (178)
T ss_pred EEEEECcCCCCCCcHHHHHHHHHHHHHHHCCCEEEECCC
Confidence 567776643 35567888999999999988876553
No 224
>PRK06526 transposase; Provisional
Probab=42.28 E-value=40 Score=26.69 Aligned_cols=40 Identities=13% Similarity=0.082 Sum_probs=34.1
Q ss_pred cceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCC
Q 039991 35 QLHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPAN 74 (172)
Q Consensus 35 ~~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~ 74 (172)
...++++..||.|--.-...|+.++..+|+.|.+.+....
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l 137 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQW 137 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHH
Confidence 4678999999999888899999999999999988766543
No 225
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=42.27 E-value=29 Score=28.25 Aligned_cols=32 Identities=9% Similarity=0.156 Sum_probs=24.1
Q ss_pred ceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCC
Q 039991 36 LHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTP 72 (172)
Q Consensus 36 ~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~ 72 (172)
++|+|+.....| ..+|..|+++||+|+++...
T Consensus 3 mkI~IiG~G~mG-----~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 3 ARICVLGAGSIG-----CYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred ceEEEECCCHHH-----HHHHHHHHhcCCcEEEEecH
Confidence 578888555444 34788899999999998753
No 226
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=42.22 E-value=30 Score=25.00 Aligned_cols=21 Identities=19% Similarity=0.376 Sum_probs=18.0
Q ss_pred HHHHHHHHHCCCEEEEEeCCC
Q 039991 53 VDMAKLFVTRGVKASVITTPA 73 (172)
Q Consensus 53 l~La~~La~rGh~Vt~it~~~ 73 (172)
..+++.|.++||+|+.++-..
T Consensus 12 ~~l~~~L~~~~~~V~~~~R~~ 32 (183)
T PF13460_consen 12 RALAKQLLRRGHEVTALVRSP 32 (183)
T ss_dssp HHHHHHHHHTTSEEEEEESSG
T ss_pred HHHHHHHHHCCCEEEEEecCc
Confidence 458999999999999999663
No 227
>PRK05541 adenylylsulfate kinase; Provisional
Probab=42.05 E-value=89 Score=22.61 Aligned_cols=43 Identities=5% Similarity=-0.008 Sum_probs=33.8
Q ss_pred CCCCCCcceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeC
Q 039991 29 MGSEIPQLHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITT 71 (172)
Q Consensus 29 M~~~~~~~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~ 71 (172)
|+...+..-|++...+|.|--.....|++.|..+|..+.++..
T Consensus 1 ~~~~~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~ 43 (176)
T PRK05541 1 MQMKPNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDG 43 (176)
T ss_pred CCCCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEec
Confidence 3433445688899999999999999999999888877777754
No 228
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=41.33 E-value=2.2e+02 Score=23.99 Aligned_cols=24 Identities=8% Similarity=0.171 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHH--CCCEEE---EEeCCC
Q 039991 50 IPIVDMAKLFVT--RGVKAS---VITTPA 73 (172)
Q Consensus 50 ~P~l~La~~La~--rGh~Vt---~it~~~ 73 (172)
.-.+.++++|.+ +|++|. ++.+..
T Consensus 11 ~~a~ai~~~l~~~~~~~~v~~~p~vG~~~ 39 (396)
T TIGR03492 11 LIAARIAKALLQLSPDLNLEALPLVGEGR 39 (396)
T ss_pred HHHHHHHHHHHhhCCCCCeEEeCcccCCH
Confidence 567889999998 699999 888763
No 229
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=41.26 E-value=48 Score=25.98 Aligned_cols=32 Identities=6% Similarity=0.069 Sum_probs=23.8
Q ss_pred EEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCC
Q 039991 38 VFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPA 73 (172)
Q Consensus 38 Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~ 73 (172)
|+|... .|.+- ..|+++|.++||+|..+....
T Consensus 3 ILVtG~--tGfiG--~~l~~~L~~~g~~V~~~~r~~ 34 (314)
T COG0451 3 ILVTGG--AGFIG--SHLVERLLAAGHDVRGLDRLR 34 (314)
T ss_pred EEEEcC--cccHH--HHHHHHHHhCCCeEEEEeCCC
Confidence 555543 34443 789999999999999999653
No 230
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=41.15 E-value=29 Score=29.83 Aligned_cols=28 Identities=32% Similarity=0.491 Sum_probs=21.4
Q ss_pred HhhhCCCCEEEecCCCccHHHHHHHhCCCCC
Q 039991 142 LLRDHKPDCLVADIFFPWATDAAAKFGIPRL 172 (172)
Q Consensus 142 ll~~~~~d~VI~D~~~~~a~~vA~~lgiP~v 172 (172)
.+++.++|++|... .+..+|+++|||.+
T Consensus 382 ~i~~~~pdllig~s---~~~~~A~~lgip~~ 409 (443)
T TIGR01862 382 ILEKLKPDIIFSGI---KEKFVAQKLGVPYR 409 (443)
T ss_pred HHHhcCCCEEEEcC---cchhhhhhcCCCeE
Confidence 34555899999775 45789999999974
No 231
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=41.12 E-value=51 Score=24.11 Aligned_cols=33 Identities=6% Similarity=-0.066 Sum_probs=21.8
Q ss_pred ceEEEEcCC--CccchHHHHHHHHHHHHCCCEEEE
Q 039991 36 LHVFFFPFM--AHGHMIPIVDMAKLFVTRGVKASV 68 (172)
Q Consensus 36 ~~Ilv~p~p--~~GH~~P~l~La~~La~rGh~Vt~ 68 (172)
.+|.++... ..-+..-...|++.|+++|+.|..
T Consensus 2 ~~I~V~gss~~~~~~~~~A~~lg~~La~~g~~lv~ 36 (159)
T TIGR00725 2 VQIGVIGSSNKSEELYEIAYRLGKELAKKGHILIN 36 (159)
T ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHHCCCEEEc
Confidence 356666544 334555678889999999985444
No 232
>PRK06849 hypothetical protein; Provisional
Probab=41.02 E-value=75 Score=26.45 Aligned_cols=36 Identities=14% Similarity=0.203 Sum_probs=27.5
Q ss_pred cceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCC
Q 039991 35 QLHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPAN 74 (172)
Q Consensus 35 ~~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~ 74 (172)
+++|++.. |-....+++++.|.++||+|.++.....
T Consensus 4 ~~~VLI~G----~~~~~~l~iar~l~~~G~~Vi~~d~~~~ 39 (389)
T PRK06849 4 KKTVLITG----ARAPAALELARLFHNAGHTVILADSLKY 39 (389)
T ss_pred CCEEEEeC----CCcHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 46777774 2223589999999999999999987753
No 233
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=40.98 E-value=25 Score=25.44 Aligned_cols=37 Identities=24% Similarity=0.371 Sum_probs=24.0
Q ss_pred HHHHHHHhhhCCCCEEEecCCCcc---HHHHHHHhCCCCC
Q 039991 136 QEPLEQLLRDHKPDCLVADIFFPW---ATDAAAKFGIPRL 172 (172)
Q Consensus 136 ~~~l~~ll~~~~~d~VI~D~~~~~---a~~vA~~lgiP~v 172 (172)
...+.+++++.+||+|+.-..... +..+|.+||.|++
T Consensus 79 a~~l~~~~~~~~~~lVl~~~t~~g~~la~~lA~~L~~~~v 118 (164)
T PF01012_consen 79 ADALAELIKEEGPDLVLFGSTSFGRDLAPRLAARLGAPLV 118 (164)
T ss_dssp HHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHHHHT-EEE
T ss_pred HHHHHHHHHhcCCCEEEEcCcCCCCcHHHHHHHHhCCCcc
Confidence 344556666678999988765443 4688999998863
No 234
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=40.81 E-value=69 Score=25.08 Aligned_cols=34 Identities=18% Similarity=0.228 Sum_probs=28.6
Q ss_pred eEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEe
Q 039991 37 HVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVIT 70 (172)
Q Consensus 37 ~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it 70 (172)
.|.++..++.|--.-+..|+++|.++|++|-++-
T Consensus 3 vi~ivG~~gsGKTtl~~~l~~~L~~~G~~V~viK 36 (229)
T PRK14494 3 AIGVIGFKDSGKTTLIEKILKNLKERGYRVATAK 36 (229)
T ss_pred EEEEECCCCChHHHHHHHHHHHHHhCCCeEEEEE
Confidence 3557777788999999999999999999999884
No 235
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=40.72 E-value=34 Score=30.15 Aligned_cols=28 Identities=14% Similarity=0.216 Sum_probs=20.7
Q ss_pred HhhhCCCCEEEecCCCccHHHHHHHhCCCCC
Q 039991 142 LLRDHKPDCLVADIFFPWATDAAAKFGIPRL 172 (172)
Q Consensus 142 ll~~~~~d~VI~D~~~~~a~~vA~~lgiP~v 172 (172)
++.+.++|++|.+. .+..+|+++|+|.+
T Consensus 432 ~l~~~~~DlliG~s---~~k~~a~~~giPli 459 (515)
T TIGR01286 432 LVFTEPVDFLIGNS---YGKYIQRDTLVPLI 459 (515)
T ss_pred HHhhcCCCEEEECc---hHHHHHHHcCCCEE
Confidence 33445789988775 35789999999974
No 236
>COG3046 Uncharacterized protein related to deoxyribodipyrimidine photolyase [General function prediction only]
Probab=40.68 E-value=54 Score=28.27 Aligned_cols=26 Identities=12% Similarity=0.128 Sum_probs=23.7
Q ss_pred chHHHHHHHHHHHHCCCEEEEEeCCC
Q 039991 48 HMIPIVDMAKLFVTRGVKASVITTPA 73 (172)
Q Consensus 48 H~~P~l~La~~La~rGh~Vt~it~~~ 73 (172)
|+..|.+++.+|.++|++|++.....
T Consensus 51 v~aAMR~Fad~LraeG~~V~Y~~~~~ 76 (505)
T COG3046 51 VFAAMRHFADELRAEGLKVRYERADD 76 (505)
T ss_pred HHHHHHHHHHHHhhCCceeEEEEcCC
Confidence 45689999999999999999999887
No 237
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=40.38 E-value=39 Score=24.40 Aligned_cols=26 Identities=15% Similarity=0.218 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHHHCCCEEEEEeCCCC
Q 039991 49 MIPIVDMAKLFVTRGVKASVITTPAN 74 (172)
Q Consensus 49 ~~P~l~La~~La~rGh~Vt~it~~~~ 74 (172)
.--.+=|+..|..+||+|++..++..
T Consensus 13 ~p~alYl~~~Lk~~G~~v~Va~npAA 38 (139)
T PF09001_consen 13 TPSALYLSYKLKKKGFEVVVAGNPAA 38 (139)
T ss_dssp HHHHHHHHHHHHCTTEEEEEEE-HHH
T ss_pred hHHHHHHHHHHHhcCCeEEEecCHHH
Confidence 34457788999999999999998854
No 238
>PRK14098 glycogen synthase; Provisional
Probab=40.38 E-value=31 Score=30.00 Aligned_cols=39 Identities=13% Similarity=0.347 Sum_probs=29.1
Q ss_pred cceEEEE-----cCCCccch-HHHHHHHHHHHHCCCEEEEEeCCC
Q 039991 35 QLHVFFF-----PFMAHGHM-IPIVDMAKLFVTRGVKASVITTPA 73 (172)
Q Consensus 35 ~~~Ilv~-----p~p~~GH~-~P~l~La~~La~rGh~Vt~it~~~ 73 (172)
+++|+++ |+.=.|=+ .-+-.|.++|+++||+|.++.|.-
T Consensus 5 ~~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P~y 49 (489)
T PRK14098 5 NFKVLYVSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMPKY 49 (489)
T ss_pred CcEEEEEeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 4667654 44333444 678899999999999999999964
No 239
>PRK08181 transposase; Validated
Probab=40.25 E-value=37 Score=27.19 Aligned_cols=62 Identities=11% Similarity=0.096 Sum_probs=42.4
Q ss_pred eeecCchhhhhhhhcCCCC-C-CCcceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCC
Q 039991 13 FTNNSSLSLYLIRKLNMGS-E-IPQLHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPAN 74 (172)
Q Consensus 13 ~~~~~~~~~~~~~~~~M~~-~-~~~~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~ 74 (172)
|++..+.+..+...+.... . .....++++..||.|--.-...++.++..+|+.|.|++....
T Consensus 82 ~~~~~~~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L 145 (269)
T PRK08181 82 FEAVPMVSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDL 145 (269)
T ss_pred ccCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHH
Confidence 4444444544444442211 0 124568999999998888888999999999999999887543
No 240
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=40.02 E-value=33 Score=24.11 Aligned_cols=20 Identities=10% Similarity=0.180 Sum_probs=17.6
Q ss_pred HHHHHHHHCCCEEEEEeCCC
Q 039991 54 DMAKLFVTRGVKASVITTPA 73 (172)
Q Consensus 54 ~La~~La~rGh~Vt~it~~~ 73 (172)
-+|..|++.||+|++++...
T Consensus 12 ~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 12 LYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp HHHHHHHHTTCEEEEEESHH
T ss_pred HHHHHHHHCCCceEEEEccc
Confidence 47889999999999999775
No 241
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=39.89 E-value=1.6e+02 Score=22.40 Aligned_cols=45 Identities=16% Similarity=0.043 Sum_probs=37.8
Q ss_pred cceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCChhhhh
Q 039991 35 QLHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPANTPYVS 79 (172)
Q Consensus 35 ~~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~~ 79 (172)
..-+++...||.|.-.-..+++...+.+|..|.|++.......+.
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~ 69 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYL 69 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHH
Confidence 456778899999999999999998888999999999987654443
No 242
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=39.83 E-value=29 Score=27.88 Aligned_cols=34 Identities=12% Similarity=0.091 Sum_probs=29.3
Q ss_pred CCCCCCcceEEEEcCCCccchHHHHHHHHHHHHC
Q 039991 29 MGSEIPQLHVFFFPFMAHGHMIPIVDMAKLFVTR 62 (172)
Q Consensus 29 M~~~~~~~~Ilv~p~p~~GH~~P~l~La~~La~r 62 (172)
|...+.++|+++-..||.|.-.....||++|.-.
T Consensus 42 ia~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~ 75 (333)
T KOG0991|consen 42 IAKEGNMPNLIISGPPGTGKTTSILCLARELLGD 75 (333)
T ss_pred HHHcCCCCceEeeCCCCCchhhHHHHHHHHHhCh
Confidence 3444668999999999999999999999999864
No 243
>PRK09183 transposase/IS protein; Provisional
Probab=39.83 E-value=1.1e+02 Score=24.25 Aligned_cols=39 Identities=13% Similarity=0.141 Sum_probs=31.6
Q ss_pred cceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCC
Q 039991 35 QLHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPA 73 (172)
Q Consensus 35 ~~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~ 73 (172)
...++++..+|.|--.-...||..+..+|+.|.+++...
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~ 140 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAAD 140 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHH
Confidence 457888888888777777778888888999999988653
No 244
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=39.75 E-value=96 Score=25.71 Aligned_cols=43 Identities=14% Similarity=0.176 Sum_probs=37.7
Q ss_pred CcceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCChh
Q 039991 34 PQLHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPANTP 76 (172)
Q Consensus 34 ~~~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~ 76 (172)
+...|.+...||.|--.-.-.|+..|..+|++|.+++.+....
T Consensus 55 ~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~ 97 (332)
T PRK09435 55 NALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSST 97 (332)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCcc
Confidence 3457889999999999999999999999999999999886543
No 245
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=39.71 E-value=32 Score=28.28 Aligned_cols=35 Identities=23% Similarity=0.366 Sum_probs=21.9
Q ss_pred HHHHHHhhhCCCCEEEecCCCccHHHH--HHHhCCCC
Q 039991 137 EPLEQLLRDHKPDCLVADIFFPWATDA--AAKFGIPR 171 (172)
Q Consensus 137 ~~l~~ll~~~~~d~VI~D~~~~~a~~v--A~~lgiP~ 171 (172)
..+.+++++.+||+||++.-......+ +..+++|.
T Consensus 94 ~~l~~~l~~~~pD~Vi~~~~~~~~~~~~~~~~~~ip~ 130 (380)
T PRK13609 94 KRLKLLLQAEKPDIVINTFPIIAVPELKKQTGISIPT 130 (380)
T ss_pred HHHHHHHHHhCcCEEEEcChHHHHHHHHHhcCCCCCe
Confidence 456677888899999997543332222 23345775
No 246
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=39.56 E-value=1e+02 Score=25.00 Aligned_cols=36 Identities=8% Similarity=0.089 Sum_probs=26.6
Q ss_pred eEE-EEcCCCc-cchHHHHHHHHHHHHCCCEEEEEeCC
Q 039991 37 HVF-FFPFMAH-GHMIPIVDMAKLFVTRGVKASVITTP 72 (172)
Q Consensus 37 ~Il-v~p~p~~-GH~~P~l~La~~La~rGh~Vt~it~~ 72 (172)
+|+ +++.... |--.-++.|++.|.++|+++++++..
T Consensus 3 ~il~ii~~~~~GG~e~~~~~l~~~l~~~~~~~~v~~~~ 40 (374)
T TIGR03088 3 LIVHVVYRFDVGGLENGLVNLINHLPADRYRHAVVALT 40 (374)
T ss_pred eEEEEeCCCCCCcHHHHHHHHHhhccccccceEEEEcC
Confidence 344 5555555 44488899999999999999888754
No 247
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=39.46 E-value=33 Score=27.50 Aligned_cols=24 Identities=21% Similarity=0.346 Sum_probs=20.5
Q ss_pred cchHHHHHHHHHHHHCCCEEEEEeC
Q 039991 47 GHMIPIVDMAKLFVTRGVKASVITT 71 (172)
Q Consensus 47 GH~~P~l~La~~La~rGh~Vt~it~ 71 (172)
||+.| +...+.|++.||++.++..
T Consensus 16 Gh~~~-l~~~~~lq~~g~~~~~~I~ 39 (273)
T cd00395 16 GHLIG-LLTFRRFQHAGHRPIFLIG 39 (273)
T ss_pred HHHHH-HHHHHHHHHCCCCEEEEEe
Confidence 99999 7777889999999888664
No 248
>PRK04155 chaperone protein HchA; Provisional
Probab=39.25 E-value=1.2e+02 Score=24.55 Aligned_cols=62 Identities=16% Similarity=0.128 Sum_probs=41.6
Q ss_pred eeeecCchhhhhhhhcCCCCC------CCcceEEEEcCCC------ccc-------hHHHHHHHHHHHHCCCEEEEEeCC
Q 039991 12 AFTNNSSLSLYLIRKLNMGSE------IPQLHVFFFPFMA------HGH-------MIPIVDMAKLFVTRGVKASVITTP 72 (172)
Q Consensus 12 ~~~~~~~~~~~~~~~~~M~~~------~~~~~Ilv~p~p~------~GH-------~~P~l~La~~La~rGh~Vt~it~~ 72 (172)
-|-..-|+|.|--.|-|.+.. ....+|+++.... -|+ ..=++.-...|.+.|++|+++++.
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kkiL~v~t~~~~~~~~~g~~~~tG~~~~E~~~P~~~L~~AG~eVdiAS~~ 99 (287)
T PRK04155 20 FFPSPYSLSQYTSPKSDLDGVDYPKPYRGGKKILMIAADERYLPMDNGKLFSTGNHPVETLLPMYHLHKAGFEFDVATLS 99 (287)
T ss_pred cCCChhhhhhhcCCCcCCCCCcCCCcCCCCCeEEEEEcCcccccCCCCCcCCCCccHHHHHHHHHHHHHCCCEEEEEecC
Confidence 355566888898888887643 2234888766522 133 334555667888899999999975
Q ss_pred C
Q 039991 73 A 73 (172)
Q Consensus 73 ~ 73 (172)
.
T Consensus 100 G 100 (287)
T PRK04155 100 G 100 (287)
T ss_pred C
Confidence 4
No 249
>COG4081 Uncharacterized protein conserved in archaea [Function unknown]
Probab=39.19 E-value=63 Score=23.18 Aligned_cols=38 Identities=11% Similarity=0.124 Sum_probs=28.4
Q ss_pred eEEEEcCCCc-cchHHHHHHHHHHHHCCCEEEEEeCCCC
Q 039991 37 HVFFFPFMAH-GHMIPIVDMAKLFVTRGVKASVITTPAN 74 (172)
Q Consensus 37 ~Ilv~p~p~~-GH~~P~l~La~~La~rGh~Vt~it~~~~ 74 (172)
-++++..|-. -.+-..+=++.+|-.+|++||+..++..
T Consensus 5 vlv~lGCPeiP~qissaiYls~klkkkgf~v~VaateAa 43 (148)
T COG4081 5 VLVSLGCPEIPPQISSAIYLSHKLKKKGFDVTVAATEAA 43 (148)
T ss_pred EEEEecCCCCCccchHHHHHHHHhhccCccEEEecCHhh
Confidence 3456666655 4455667789999999999999998853
No 250
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=39.09 E-value=1.6e+02 Score=23.77 Aligned_cols=41 Identities=17% Similarity=0.136 Sum_probs=36.0
Q ss_pred CcceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCC
Q 039991 34 PQLHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPAN 74 (172)
Q Consensus 34 ~~~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~ 74 (172)
+...|++...||.|--.-+..|+..|..+|++|.++..+..
T Consensus 33 ~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~ 73 (300)
T TIGR00750 33 NAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPS 73 (300)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 35677788999999999999999999999999999987754
No 251
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=39.06 E-value=51 Score=28.22 Aligned_cols=44 Identities=14% Similarity=0.147 Sum_probs=30.1
Q ss_pred hhcCCCCCCCcceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCC
Q 039991 25 RKLNMGSEIPQLHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTP 72 (172)
Q Consensus 25 ~~~~M~~~~~~~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~ 72 (172)
.+++.+-+.+.++|+|....|. +- ..|++.|.++|++|+.+...
T Consensus 110 ~~~~~~~~~~~mkILVTGatGF--IG--s~Lv~~Ll~~G~~V~~ldr~ 153 (436)
T PLN02166 110 GRVPVGIGRKRLRIVVTGGAGF--VG--SHLVDKLIGRGDEVIVIDNF 153 (436)
T ss_pred CCCCcccccCCCEEEEECCccH--HH--HHHHHHHHHCCCEEEEEeCC
Confidence 4555554445578888874444 32 35788999999999988643
No 252
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=39.05 E-value=74 Score=25.57 Aligned_cols=37 Identities=14% Similarity=0.132 Sum_probs=31.5
Q ss_pred eEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCC
Q 039991 37 HVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPA 73 (172)
Q Consensus 37 ~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~ 73 (172)
+|+++.=.|.|--.....||..|+++|.+|.++-.+.
T Consensus 2 ~ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID~Dp 38 (290)
T CHL00072 2 KLAVYGKGGIGKSTTSCNISIALARRGKKVLQIGCDP 38 (290)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeccC
Confidence 4677777788999999999999999999999887654
No 253
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=38.94 E-value=93 Score=25.52 Aligned_cols=40 Identities=13% Similarity=0.167 Sum_probs=35.6
Q ss_pred cceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCC
Q 039991 35 QLHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPAN 74 (172)
Q Consensus 35 ~~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~ 74 (172)
...|+++..+|.|--.-...||..|..+|.+|.++..+.+
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~ 153 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTF 153 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCcc
Confidence 3467789999999999999999999999999999998764
No 254
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=38.93 E-value=79 Score=23.98 Aligned_cols=36 Identities=14% Similarity=0.165 Sum_probs=25.2
Q ss_pred HHHHHHhhhCCCCEEEecCCC------ccHHHHHHHhCCCCC
Q 039991 137 EPLEQLLRDHKPDCLVADIFF------PWATDAAAKFGIPRL 172 (172)
Q Consensus 137 ~~l~~ll~~~~~d~VI~D~~~------~~a~~vA~~lgiP~v 172 (172)
..+.+++++.+||+|+.-.-. -.+..+|.+||.|.+
T Consensus 98 ~al~~~i~~~~p~lVL~~~t~~~~~grdlaprlAarLga~lv 139 (202)
T cd01714 98 KALAAAIKKIGVDLILTGKQSIDGDTGQVGPLLAELLGWPQI 139 (202)
T ss_pred HHHHHHHHHhCCCEEEEcCCcccCCcCcHHHHHHHHhCCCcc
Confidence 344555666679988887555 236799999998864
No 255
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=38.84 E-value=44 Score=28.56 Aligned_cols=28 Identities=25% Similarity=0.343 Sum_probs=21.3
Q ss_pred HhhhCCCCEEEecCCCccHHHHHHHhCCCCC
Q 039991 142 LLRDHKPDCLVADIFFPWATDAAAKFGIPRL 172 (172)
Q Consensus 142 ll~~~~~d~VI~D~~~~~a~~vA~~lgiP~v 172 (172)
.+++.+||++|.... ...+|+++|+|++
T Consensus 372 ~i~~~~pDliiG~s~---~~~~a~~~gip~v 399 (435)
T cd01974 372 LLFTEPVDLLIGNTY---GKYIARDTDIPLV 399 (435)
T ss_pred HHhhcCCCEEEECcc---HHHHHHHhCCCEE
Confidence 344457999998753 5789999999974
No 256
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=38.79 E-value=41 Score=28.56 Aligned_cols=27 Identities=26% Similarity=0.405 Sum_probs=21.0
Q ss_pred hhhCCCCEEEecCCCccHHHHHHHhCCCCC
Q 039991 143 LRDHKPDCLVADIFFPWATDAAAKFGIPRL 172 (172)
Q Consensus 143 l~~~~~d~VI~D~~~~~a~~vA~~lgiP~v 172 (172)
+++.+||++|.. .-+..+|+++|||.+
T Consensus 346 ~~~~~pDl~Ig~---s~~~~~a~~~giP~~ 372 (416)
T cd01980 346 VEEYRPDLAIGT---TPLVQYAKEKGIPAL 372 (416)
T ss_pred HhhcCCCEEEeC---ChhhHHHHHhCCCEE
Confidence 345689999977 336789999999973
No 257
>PRK12377 putative replication protein; Provisional
Probab=38.76 E-value=47 Score=26.27 Aligned_cols=43 Identities=14% Similarity=0.175 Sum_probs=36.1
Q ss_pred ceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCChhhh
Q 039991 36 LHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPANTPYV 78 (172)
Q Consensus 36 ~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~ 78 (172)
..+++...||.|--.-..+++..|..+|+.|.+++.......+
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l 144 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRL 144 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHH
Confidence 4688999999998888999999999999999999876544433
No 258
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=38.64 E-value=56 Score=27.95 Aligned_cols=35 Identities=17% Similarity=0.225 Sum_probs=26.0
Q ss_pred cceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCC
Q 039991 35 QLHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPA 73 (172)
Q Consensus 35 ~~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~ 73 (172)
..+|+|+...+.| +-.+|+.|.++|++|+..-...
T Consensus 7 ~~~v~viG~G~sG----~s~~a~~L~~~G~~V~~~D~~~ 41 (461)
T PRK00421 7 IKRIHFVGIGGIG----MSGLAEVLLNLGYKVSGSDLKE 41 (461)
T ss_pred CCEEEEEEEchhh----HHHHHHHHHhCCCeEEEECCCC
Confidence 3578888766655 3448999999999998876543
No 259
>PF02603 Hpr_kinase_N: HPr Serine kinase N terminus; InterPro: IPR011126 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the N-terminal region of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller. The blades are formed by two N-terminal domains each, and the compact central hub assembles the C-terminal kinase domains []. ; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 1KNX_B 1KO7_A.
Probab=38.44 E-value=38 Score=23.75 Aligned_cols=39 Identities=28% Similarity=0.360 Sum_probs=25.8
Q ss_pred HHhHHHHHHHhhhCCCCEEEecCCCcc--HHHHHHHhCCCC
Q 039991 133 TKLQEPLEQLLRDHKPDCLVADIFFPW--ATDAAAKFGIPR 171 (172)
Q Consensus 133 ~~~~~~l~~ll~~~~~d~VI~D~~~~~--a~~vA~~lgiP~ 171 (172)
+.....+++++....|.+||++-+... ...+|++.|+|.
T Consensus 68 ~~r~~~l~~l~~~~~P~iIvt~~~~~p~~l~e~a~~~~ipl 108 (127)
T PF02603_consen 68 EERKERLEKLFSYNPPCIIVTRGLEPPPELIELAEKYNIPL 108 (127)
T ss_dssp HHHCCHHHHHCTTT-S-EEEETTT---HHHHHHHHHCT--E
T ss_pred HHHHHHHHHHhCCCCCEEEEECcCCCCHHHHHHHHHhCCcE
Confidence 345577788888778999999988755 469999999995
No 260
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=38.21 E-value=95 Score=24.20 Aligned_cols=45 Identities=13% Similarity=0.118 Sum_probs=37.1
Q ss_pred cceEEEEcCCCccchHHHHHHHHHHHHC-CCEEEEEeCCCChhhhh
Q 039991 35 QLHVFFFPFMAHGHMIPIVDMAKLFVTR-GVKASVITTPANTPYVS 79 (172)
Q Consensus 35 ~~~Ilv~p~p~~GH~~P~l~La~~La~r-Gh~Vt~it~~~~~~~~~ 79 (172)
..-+++...||.|--.-.++++..++.. |..|.+++.+.....+.
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~~~~~~~ 75 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEPVVRTA 75 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcccCHHHHH
Confidence 3456688889999999999999999887 99999999987654443
No 261
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=38.16 E-value=42 Score=24.66 Aligned_cols=45 Identities=11% Similarity=0.005 Sum_probs=29.7
Q ss_pred hhhhhhcCCCCCCCcceEEEEcCCCccch-HHHHHHHHHHHHCCCEEEEEe
Q 039991 21 LYLIRKLNMGSEIPQLHVFFFPFMAHGHM-IPIVDMAKLFVTRGVKASVIT 70 (172)
Q Consensus 21 ~~~~~~~~M~~~~~~~~Ilv~p~p~~GH~-~P~l~La~~La~rGh~Vt~it 70 (172)
.+.++.+. ..+..+|+++..++ += -=-+.+|+.|+++|++|+++.
T Consensus 14 ~~i~~~~~---~~~~~~v~il~G~G--nNGgDgl~~AR~L~~~G~~V~v~~ 59 (169)
T PF03853_consen 14 ELIRKLFG---SPKGPRVLILCGPG--NNGGDGLVAARHLANRGYNVTVYL 59 (169)
T ss_dssp HHHHHHST---CCTT-EEEEEE-SS--HHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHhc---ccCCCeEEEEECCC--CChHHHHHHHHHHHHCCCeEEEEE
Confidence 34555553 13457888888554 32 246789999999999999944
No 262
>PRK06851 hypothetical protein; Provisional
Probab=38.04 E-value=93 Score=26.21 Aligned_cols=43 Identities=16% Similarity=0.110 Sum_probs=37.2
Q ss_pred ceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCChhhh
Q 039991 36 LHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPANTPYV 78 (172)
Q Consensus 36 ~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~ 78 (172)
..+++-..||.|--.-+..+++++.++|.+|.++..+...+++
T Consensus 215 ~~~~i~G~pG~GKstl~~~i~~~a~~~G~~v~~~hC~~dPdsl 257 (367)
T PRK06851 215 NRYFLKGRPGTGKSTMLKKIAKAAEERGFDVEVYHCGFDPDSL 257 (367)
T ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCc
Confidence 4677888899999999999999999999999999988664443
No 263
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=37.81 E-value=57 Score=25.58 Aligned_cols=42 Identities=12% Similarity=0.309 Sum_probs=35.4
Q ss_pred eEEEEcCCCccchHHHHHHHHHHHHC--CCEEEEEeCCCChhhh
Q 039991 37 HVFFFPFMAHGHMIPIVDMAKLFVTR--GVKASVITTPANTPYV 78 (172)
Q Consensus 37 ~Ilv~p~p~~GH~~P~l~La~~La~r--Gh~Vt~it~~~~~~~~ 78 (172)
+|+++-..+.|.+.-+.++.+.|.++ +.+|++++.....+.+
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~~l~ 44 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAPLL 44 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhHHHH
Confidence 57888888889999999999999997 5899999998654433
No 264
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=37.80 E-value=83 Score=25.07 Aligned_cols=30 Identities=20% Similarity=0.272 Sum_probs=27.3
Q ss_pred ceEEEEcCCCccchHHHHHHHHHHHHCCCE
Q 039991 36 LHVFFFPFMAHGHMIPIVDMAKLFVTRGVK 65 (172)
Q Consensus 36 ~~Ilv~p~p~~GH~~P~l~La~~La~rGh~ 65 (172)
+-|+|...|..|--.-..+|.+.|+++|+.
T Consensus 2 pLVvi~G~P~SGKstrA~~L~~~l~~~~~K 31 (281)
T KOG3062|consen 2 PLVVICGLPCSGKSTRAVELREALKERGTK 31 (281)
T ss_pred CeEEEeCCCCCCchhHHHHHHHHHHhhccc
Confidence 457888999999999999999999999986
No 265
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=37.73 E-value=1.3e+02 Score=20.65 Aligned_cols=40 Identities=15% Similarity=0.193 Sum_probs=34.8
Q ss_pred eEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCChh
Q 039991 37 HVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPANTP 76 (172)
Q Consensus 37 ~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~ 76 (172)
+++++..||.|.-.-...++..++.+|..|.++..+....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchH
Confidence 3678888999999999999999999999999999886543
No 266
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=37.67 E-value=40 Score=26.04 Aligned_cols=29 Identities=10% Similarity=0.086 Sum_probs=22.4
Q ss_pred EEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCC
Q 039991 38 VFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTP 72 (172)
Q Consensus 38 Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~ 72 (172)
=+++|.-|.||= +..|+++||+|+=+=..
T Consensus 40 rvLvPgCG~g~D------~~~La~~G~~VvGvDls 68 (218)
T PF05724_consen 40 RVLVPGCGKGYD------MLWLAEQGHDVVGVDLS 68 (218)
T ss_dssp EEEETTTTTSCH------HHHHHHTTEEEEEEES-
T ss_pred eEEEeCCCChHH------HHHHHHCCCeEEEEecC
Confidence 366799999987 56788999998776544
No 267
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=37.65 E-value=81 Score=24.45 Aligned_cols=38 Identities=8% Similarity=0.158 Sum_probs=31.1
Q ss_pred eEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCC
Q 039991 37 HVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPAN 74 (172)
Q Consensus 37 ~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~ 74 (172)
.|+++.=.|.|--.-...||..|+++|++|-++=....
T Consensus 3 ~iav~~KGGvGKTT~~~nLA~~La~~G~kVlliD~Dpq 40 (270)
T cd02040 3 QIAIYGKGGIGKSTTTQNLSAALAEMGKKVMIVGCDPK 40 (270)
T ss_pred EEEEEeCCcCCHHHHHHHHHHHHHhCCCeEEEEEcCCC
Confidence 46666555668889999999999999999999876543
No 268
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=37.64 E-value=49 Score=25.94 Aligned_cols=25 Identities=8% Similarity=0.098 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHCCCEEEEEeCCCC
Q 039991 50 IPIVDMAKLFVTRGVKASVITTPAN 74 (172)
Q Consensus 50 ~P~l~La~~La~rGh~Vt~it~~~~ 74 (172)
-+++.+.+.|.++|+.|.++|....
T Consensus 123 p~al~l~~~l~~~G~~Vf~lTGR~e 147 (229)
T TIGR01675 123 PEGLKLYQKIIELGIKIFLLSGRWE 147 (229)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCCh
Confidence 4889999999999999999999865
No 269
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=37.57 E-value=49 Score=26.31 Aligned_cols=33 Identities=18% Similarity=0.228 Sum_probs=24.6
Q ss_pred eEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCC
Q 039991 37 HVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPAN 74 (172)
Q Consensus 37 ~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~ 74 (172)
+|+++. |.| . -.+|+++|.++||+|+..+....
T Consensus 2 ~ILvlG--GT~--e-gr~la~~L~~~g~~v~~s~~t~~ 34 (256)
T TIGR00715 2 TVLLMG--GTV--D-SRAIAKGLIAQGIEILVTVTTSE 34 (256)
T ss_pred eEEEEe--chH--H-HHHHHHHHHhCCCeEEEEEccCC
Confidence 566665 333 2 67899999999999999887754
No 270
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=37.52 E-value=1.1e+02 Score=22.79 Aligned_cols=37 Identities=11% Similarity=0.239 Sum_probs=31.3
Q ss_pred cceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeC
Q 039991 35 QLHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITT 71 (172)
Q Consensus 35 ~~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~ 71 (172)
+..+.++.+++.|--.-+..|.+.|..+|.+|-.+-.
T Consensus 6 ~~ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg~Ik~ 42 (173)
T PRK10751 6 IPLLAIAAWSGTGKTTLLKKLIPALCARGIRPGLIKH 42 (173)
T ss_pred ceEEEEECCCCChHHHHHHHHHHHHhhcCCeEEEEEE
Confidence 3456788888999999999999999999998877754
No 271
>TIGR03274 methan_mark_7 putative methanogenesis marker protein 7. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=37.47 E-value=40 Score=27.26 Aligned_cols=36 Identities=22% Similarity=0.290 Sum_probs=30.5
Q ss_pred ceEEEEcCCCccch-HHHHHHHHHHHHCCCEEEEEeC
Q 039991 36 LHVFFFPFMAHGHM-IPIVDMAKLFVTRGVKASVITT 71 (172)
Q Consensus 36 ~~Ilv~p~p~~GH~-~P~l~La~~La~rGh~Vt~it~ 71 (172)
--+++.|+|+.=|+ -|...++..|.+.|.++.++.-
T Consensus 71 eV~vVamSpgrrHlpkpvCdIt~~LR~~G~~tn~l~L 107 (302)
T TIGR03274 71 EIAVVSPSLARHHLPHAACDIAEYLRRYGAKTNMIGL 107 (302)
T ss_pred cEEEEecCcccccCCCcHHHHHHHHHhcCCccceEEE
Confidence 45679999999999 6999999999999987766553
No 272
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=37.43 E-value=62 Score=26.80 Aligned_cols=34 Identities=15% Similarity=0.150 Sum_probs=25.0
Q ss_pred CcceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeC
Q 039991 34 PQLHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITT 71 (172)
Q Consensus 34 ~~~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~ 71 (172)
+.++|+|.. +-|.+ -.+|++.|.++||+|+.+.-
T Consensus 20 ~~~~IlVtG--gtGfI--G~~l~~~L~~~G~~V~~v~r 53 (370)
T PLN02695 20 EKLRICITG--AGGFI--ASHIARRLKAEGHYIIASDW 53 (370)
T ss_pred CCCEEEEEC--CccHH--HHHHHHHHHhCCCEEEEEEe
Confidence 357888875 33443 35688999999999998873
No 273
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=37.41 E-value=1.1e+02 Score=23.72 Aligned_cols=43 Identities=7% Similarity=-0.052 Sum_probs=36.2
Q ss_pred eEEEEcCCCccchHHHHHHHHHHHHC-CCEEEEEeCCCChhhhh
Q 039991 37 HVFFFPFMAHGHMIPIVDMAKLFVTR-GVKASVITTPANTPYVS 79 (172)
Q Consensus 37 ~Ilv~p~p~~GH~~P~l~La~~La~r-Gh~Vt~it~~~~~~~~~ 79 (172)
=+++...|+.|.-.-++++|..++.+ |+.|.+++.+.....+.
T Consensus 21 L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~~~l~ 64 (259)
T PF03796_consen 21 LTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSEEELA 64 (259)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-HHHHH
T ss_pred EEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHH
Confidence 45688889999999999999999998 69999999997766543
No 274
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=37.32 E-value=39 Score=27.15 Aligned_cols=21 Identities=19% Similarity=0.309 Sum_probs=18.3
Q ss_pred HHHHHHHHHHCCCEEEEEeCC
Q 039991 52 IVDMAKLFVTRGVKASVITTP 72 (172)
Q Consensus 52 ~l~La~~La~rGh~Vt~it~~ 72 (172)
-.++|+.|++||++|.++.=.
T Consensus 19 G~~~A~~lA~~g~~liLvaR~ 39 (265)
T COG0300 19 GAELAKQLARRGYNLILVARR 39 (265)
T ss_pred HHHHHHHHHHCCCEEEEEeCc
Confidence 478999999999999998844
No 275
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=37.22 E-value=52 Score=27.21 Aligned_cols=39 Identities=28% Similarity=0.238 Sum_probs=24.3
Q ss_pred HhHHHHHHHhhhCCCCEEEe--cCCCcc-HHHHHHHhCCCCC
Q 039991 134 KLQEPLEQLLRDHKPDCLVA--DIFFPW-ATDAAAKFGIPRL 172 (172)
Q Consensus 134 ~~~~~l~~ll~~~~~d~VI~--D~~~~~-a~~vA~~lgiP~v 172 (172)
.+...+.+++.+.+||+||+ |.+..- ++.+|..++||++
T Consensus 54 ~~~~~~~~~~~~~~Pd~Vlv~GD~~~~la~alaA~~~~ipv~ 95 (346)
T PF02350_consen 54 LAIIELADVLEREKPDAVLVLGDRNEALAAALAAFYLNIPVA 95 (346)
T ss_dssp HHHHHHHHHHHHHT-SEEEEETTSHHHHHHHHHHHHTT-EEE
T ss_pred HHHHHHHHHHHhcCCCEEEEEcCCchHHHHHHHHHHhCCCEE
Confidence 34455566666678997765 554433 5688999999964
No 276
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=37.20 E-value=55 Score=26.69 Aligned_cols=41 Identities=7% Similarity=-0.007 Sum_probs=28.2
Q ss_pred hhhhcCCCCCCCcceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeC
Q 039991 23 LIRKLNMGSEIPQLHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITT 71 (172)
Q Consensus 23 ~~~~~~M~~~~~~~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~ 71 (172)
+|-||-|+. .+|++....| -+- ..|+++|.++|++|+.+.-
T Consensus 7 ~~~~~~~~~----~~vlVtGatG--fiG--~~lv~~L~~~g~~V~~~d~ 47 (348)
T PRK15181 7 LRTKLVLAP----KRWLITGVAG--FIG--SGLLEELLFLNQTVIGLDN 47 (348)
T ss_pred hhhcccccC----CEEEEECCcc--HHH--HHHHHHHHHCCCEEEEEeC
Confidence 566777663 5677776444 332 2378999999999988764
No 277
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=37.12 E-value=30 Score=28.88 Aligned_cols=35 Identities=9% Similarity=0.093 Sum_probs=26.2
Q ss_pred cceEEEEcCC-CccchHHHHHHHHHHHHCCC---EEEEE
Q 039991 35 QLHVFFFPFM-AHGHMIPIVDMAKLFVTRGV---KASVI 69 (172)
Q Consensus 35 ~~~Ilv~p~p-~~GH~~P~l~La~~La~rGh---~Vt~i 69 (172)
+++|++++.. |.||.....+|.++|.++|. +|.++
T Consensus 5 ~~~vlil~~~~G~GH~~aA~al~~~~~~~~~~~~~~~~~ 43 (391)
T PRK13608 5 NKKILIITGSFGNGHMQVTQSIVNQLNDMNLDHLSVIEH 43 (391)
T ss_pred CceEEEEECCCCchHHHHHHHHHHHHHhhCCCCceEEEe
Confidence 4677766644 45999999999999998864 45544
No 278
>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.
Probab=37.07 E-value=38 Score=26.27 Aligned_cols=29 Identities=17% Similarity=0.260 Sum_probs=20.7
Q ss_pred EEcCCCccchHHHHHHHHHHHHCCCEEEEEe
Q 039991 40 FFPFMAHGHMIPIVDMAKLFVTRGVKASVIT 70 (172)
Q Consensus 40 v~p~p~~GH~~P~l~La~~La~rGh~Vt~it 70 (172)
++...+.|- --.++|++|+++|++|+++.
T Consensus 18 ~itN~SSGg--IG~AIA~~la~~Ga~Vvlv~ 46 (227)
T TIGR02114 18 SITNHSTGH--LGKIITETFLSAGHEVTLVT 46 (227)
T ss_pred eecCCcccH--HHHHHHHHHHHCCCEEEEEc
Confidence 444444442 34678999999999999986
No 279
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=37.01 E-value=54 Score=26.50 Aligned_cols=40 Identities=15% Similarity=0.196 Sum_probs=34.8
Q ss_pred eEEEEcCCCccchHHHHHHHHHHHHC--CCEEEEEeCCCChh
Q 039991 37 HVFFFPFMAHGHMIPIVDMAKLFVTR--GVKASVITTPANTP 76 (172)
Q Consensus 37 ~Ilv~p~p~~GH~~P~l~La~~La~r--Gh~Vt~it~~~~~~ 76 (172)
+|+++-..+.|.+.-..++.+.|.+. +.+|++++.+.+.+
T Consensus 1 rILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~~~ 42 (334)
T TIGR02195 1 KILVIGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPAWCRP 42 (334)
T ss_pred CEEEEccchhHHHHHHHHHHHHHHHHCCCCEEEEEechhhHH
Confidence 58888888999999999999999986 99999999875543
No 280
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=36.89 E-value=47 Score=28.39 Aligned_cols=35 Identities=23% Similarity=0.429 Sum_probs=26.1
Q ss_pred eEEEEcCCC-c--cchHHHHHHHHHHHHCCCEEEEEeCC
Q 039991 37 HVFFFPFMA-H--GHMIPIVDMAKLFVTRGVKASVITTP 72 (172)
Q Consensus 37 ~Ilv~p~p~-~--GH~~P~l~La~~La~rGh~Vt~it~~ 72 (172)
-+.+=|... . ||+.|++. .+.|+..||++.++...
T Consensus 37 y~G~dPT~~sLHlGhlv~l~~-l~~lq~~G~~~~~ligd 74 (410)
T PRK13354 37 YLGFDPTAPSLHIGHLVPLMK-LKRFQDAGHRPVILIGG 74 (410)
T ss_pred EEcccCCCCCcchhhHHHHHH-HHHHHHcCCeEEEEEcc
Confidence 445777753 2 99999665 55889999999998844
No 281
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=36.75 E-value=53 Score=26.71 Aligned_cols=41 Identities=15% Similarity=0.297 Sum_probs=35.5
Q ss_pred eEEEEcCCCccchHHHHHHHHHHHHC--CCEEEEEeCCCChhh
Q 039991 37 HVFFFPFMAHGHMIPIVDMAKLFVTR--GVKASVITTPANTPY 77 (172)
Q Consensus 37 ~Ilv~p~p~~GH~~P~l~La~~La~r--Gh~Vt~it~~~~~~~ 77 (172)
+|+++-..+.|.+.-..++.+.|.++ +.+|++++.+.+.+.
T Consensus 1 rILii~~~~iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~~~~~l 43 (344)
T TIGR02201 1 RILLIKLRHHGDMLLTTPVISSLKKNYPDAKIDVLLYQETIPI 43 (344)
T ss_pred CEEEEEeccccceeeHHHHHHHHHHHCCCCEEEEEECcChHHH
Confidence 58888888999999999999999986 899999998866443
No 282
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=36.70 E-value=1.1e+02 Score=26.16 Aligned_cols=41 Identities=12% Similarity=0.123 Sum_probs=34.8
Q ss_pred cceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCCh
Q 039991 35 QLHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPANT 75 (172)
Q Consensus 35 ~~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~ 75 (172)
...++++...|.|--.-+..||..+..+|++|.+++.+.+.
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR 246 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFR 246 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccC
Confidence 34566777778899999999999999999999999998763
No 283
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=36.64 E-value=50 Score=26.15 Aligned_cols=33 Identities=12% Similarity=0.211 Sum_probs=22.1
Q ss_pred ceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCC
Q 039991 36 LHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPAN 74 (172)
Q Consensus 36 ~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~ 74 (172)
++|+++...+-| ..|++.|.++|+ |++-+..++
T Consensus 1 m~ILvlgGTtE~-----r~la~~L~~~g~-v~~sv~t~~ 33 (249)
T PF02571_consen 1 MKILVLGGTTEG-----RKLAERLAEAGY-VIVSVATSY 33 (249)
T ss_pred CEEEEEechHHH-----HHHHHHHHhcCC-EEEEEEhhh
Confidence 356666644444 468999999998 666555544
No 284
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=36.62 E-value=44 Score=28.72 Aligned_cols=31 Identities=39% Similarity=0.406 Sum_probs=22.3
Q ss_pred HHHHhhhCCCCEEEecCCCccHHHHHHHhCCCCC
Q 039991 139 LEQLLRDHKPDCLVADIFFPWATDAAAKFGIPRL 172 (172)
Q Consensus 139 l~~ll~~~~~d~VI~D~~~~~a~~vA~~lgiP~v 172 (172)
+++++++.+||++|.. .....+|.++|||++
T Consensus 387 ~~~~i~~~~pDl~ig~---~~~~~~a~k~giP~i 417 (456)
T TIGR01283 387 LLKLLLEYKADLLIAG---GKERYTALKLGIPFC 417 (456)
T ss_pred HHHHHhhcCCCEEEEc---cchHHHHHhcCCCEE
Confidence 4445555689999976 345678899999963
No 285
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=36.51 E-value=97 Score=23.97 Aligned_cols=34 Identities=15% Similarity=-0.027 Sum_probs=22.0
Q ss_pred ceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEe
Q 039991 36 LHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVIT 70 (172)
Q Consensus 36 ~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it 70 (172)
.++++++..+.| .---.++|++|+++|++|.+..
T Consensus 8 ~k~~lITGas~~-~GIG~a~a~~la~~G~~v~~~~ 41 (260)
T PRK06603 8 GKKGLITGIANN-MSISWAIAQLAKKHGAELWFTY 41 (260)
T ss_pred CcEEEEECCCCC-cchHHHHHHHHHHcCCEEEEEe
Confidence 356666655542 1134578888999999887754
No 286
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=36.50 E-value=45 Score=26.58 Aligned_cols=25 Identities=24% Similarity=0.526 Sum_probs=21.3
Q ss_pred cchHHHHHHHHHHHHCCCEEEEEeCC
Q 039991 47 GHMIPIVDMAKLFVTRGVKASVITTP 72 (172)
Q Consensus 47 GH~~P~l~La~~La~rGh~Vt~it~~ 72 (172)
||+.|++ ..++|++.||++.++...
T Consensus 17 G~~~~~~-~~~~lq~~g~~~~ilI~D 41 (269)
T cd00805 17 GHLVPLM-KLRDFQQAGHEVIVLIGD 41 (269)
T ss_pred HHHHHHH-HHHHHHHCCCeEEEEECC
Confidence 9999976 678888889999988776
No 287
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=36.44 E-value=71 Score=25.95 Aligned_cols=32 Identities=9% Similarity=-0.010 Sum_probs=22.8
Q ss_pred ceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeC
Q 039991 36 LHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITT 71 (172)
Q Consensus 36 ~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~ 71 (172)
++|++.... |.+- ..|+++|+++||+|+.+.-
T Consensus 5 k~ilItGat--G~IG--~~l~~~L~~~G~~V~~~~r 36 (349)
T TIGR02622 5 KKVLVTGHT--GFKG--SWLSLWLLELGAEVYGYSL 36 (349)
T ss_pred CEEEEECCC--ChhH--HHHHHHHHHCCCEEEEEeC
Confidence 466666533 3332 6789999999999988763
No 288
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=36.36 E-value=35 Score=26.41 Aligned_cols=22 Identities=14% Similarity=0.214 Sum_probs=19.1
Q ss_pred HHHHHHHHHCCCEEEEEeCCCC
Q 039991 53 VDMAKLFVTRGVKASVITTPAN 74 (172)
Q Consensus 53 l~La~~La~rGh~Vt~it~~~~ 74 (172)
..+|+.|.++||+|+.+-....
T Consensus 13 ~~va~~L~~~g~~Vv~Id~d~~ 34 (225)
T COG0569 13 RSVARELSEEGHNVVLIDRDEE 34 (225)
T ss_pred HHHHHHHHhCCCceEEEEcCHH
Confidence 6789999999999999987743
No 289
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=36.28 E-value=32 Score=29.43 Aligned_cols=28 Identities=25% Similarity=0.381 Sum_probs=21.5
Q ss_pred HhhhCCCCEEEecCCCccHHHHHHHhCCCCC
Q 039991 142 LLRDHKPDCLVADIFFPWATDAAAKFGIPRL 172 (172)
Q Consensus 142 ll~~~~~d~VI~D~~~~~a~~vA~~lgiP~v 172 (172)
.+++.++|++|... -+..+|+++|||.+
T Consensus 350 ~l~~~~pDllig~s---~~~~~A~k~gIP~v 377 (422)
T TIGR02015 350 AVLEFEPDLAIGTT---PLVQFAKEHGIPAL 377 (422)
T ss_pred HHhhCCCCEEEcCC---cchHHHHHcCCCEE
Confidence 34556999999873 35679999999974
No 290
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=36.19 E-value=91 Score=23.66 Aligned_cols=32 Identities=19% Similarity=0.188 Sum_probs=23.1
Q ss_pred ceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCC
Q 039991 36 LHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTP 72 (172)
Q Consensus 36 ~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~ 72 (172)
.+|+++. .|-+- ...++.|.+.|++||++.+.
T Consensus 11 k~vLVIG---gG~va--~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 11 KRVVIVG---GGKVA--GRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CEEEEEC---CCHHH--HHHHHHHHHCCCeEEEEcCC
Confidence 4677774 34443 56788888999999998765
No 291
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=36.11 E-value=76 Score=25.83 Aligned_cols=28 Identities=14% Similarity=0.130 Sum_probs=23.0
Q ss_pred cchHHHHHHHHHHHHCCCEEEEEeCCCC
Q 039991 47 GHMIPIVDMAKLFVTRGVKASVITTPAN 74 (172)
Q Consensus 47 GH~~P~l~La~~La~rGh~Vt~it~~~~ 74 (172)
|=-.-...|++.|.+.||+|+++++...
T Consensus 13 Gv~~~~~~l~~~l~~~g~~v~~~~~~~~ 40 (372)
T cd03792 13 GVAEILHSLVPLMRDLGVDTRWEVIKGD 40 (372)
T ss_pred cHHHHHHHHHHHHHHcCCCceEEecCCC
Confidence 4456677999999999999999987543
No 292
>PLN02924 thymidylate kinase
Probab=36.05 E-value=1.7e+02 Score=22.46 Aligned_cols=47 Identities=15% Similarity=0.193 Sum_probs=36.3
Q ss_pred hcCCCCCC----CcceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCC
Q 039991 26 KLNMGSEI----PQLHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTP 72 (172)
Q Consensus 26 ~~~M~~~~----~~~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~ 72 (172)
.|.|++.. +..-|++-...|.|--.-.-.|++.|..+|+.|.+..-+
T Consensus 3 ~~~~~~~~~~~~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v~~~~ep 53 (220)
T PLN02924 3 SMGMETESSVESRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAAELWRFP 53 (220)
T ss_pred ccccCCCCCcCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCceeeeCC
Confidence 35676542 234688999999999999999999999999998655433
No 293
>PRK00889 adenylylsulfate kinase; Provisional
Probab=35.73 E-value=1.3e+02 Score=21.66 Aligned_cols=38 Identities=16% Similarity=0.217 Sum_probs=33.1
Q ss_pred cceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCC
Q 039991 35 QLHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTP 72 (172)
Q Consensus 35 ~~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~ 72 (172)
..-|++...||.|--.-...|++.|...|..+.++...
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D 41 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGD 41 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCc
Confidence 34677899999999999999999999999999888664
No 294
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=35.65 E-value=89 Score=25.40 Aligned_cols=37 Identities=14% Similarity=0.161 Sum_probs=26.4
Q ss_pred eEEEEcC--CCccch-HHHHHHHHHHHHC--CCEEEEEeCCC
Q 039991 37 HVFFFPF--MAHGHM-IPIVDMAKLFVTR--GVKASVITTPA 73 (172)
Q Consensus 37 ~Ilv~p~--p~~GH~-~P~l~La~~La~r--Gh~Vt~it~~~ 73 (172)
+|+++.. +..|=. .-+..+++.|.++ ||+|++++...
T Consensus 2 kI~~~~~~~~~~GG~e~~~~~l~~~L~~~~~g~~v~v~~~~~ 43 (359)
T PRK09922 2 KIAFIGEAVSGFGGMETVISNVINTFEESKINCEMFFFCRND 43 (359)
T ss_pred eeEEecccccCCCchhHHHHHHHHHhhhcCcceeEEEEecCC
Confidence 4554432 233444 6778999999999 89999998764
No 295
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=35.58 E-value=1.4e+02 Score=24.89 Aligned_cols=42 Identities=14% Similarity=0.225 Sum_probs=37.7
Q ss_pred cceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCChh
Q 039991 35 QLHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPANTP 76 (172)
Q Consensus 35 ~~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~ 76 (172)
+.-|+++..=|.|--...-.||+.|.+.|.+|.+.....+..
T Consensus 139 p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRA 180 (340)
T COG0552 139 PFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRA 180 (340)
T ss_pred cEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHH
Confidence 456789999999999999999999999999999999987643
No 296
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=35.50 E-value=64 Score=25.65 Aligned_cols=31 Identities=29% Similarity=0.331 Sum_probs=21.4
Q ss_pred HhhhCCCCEEEecCCCcc-H----HHHHHHhCCCCC
Q 039991 142 LLRDHKPDCLVADIFFPW-A----TDAAAKFGIPRL 172 (172)
Q Consensus 142 ll~~~~~d~VI~D~~~~~-a----~~vA~~lgiP~v 172 (172)
++++.+.|+||+=-.... + ...|.++|||++
T Consensus 192 l~~~~~i~~lVtK~SG~~Gg~~eKi~AA~~lgi~vi 227 (256)
T TIGR00715 192 LLREYRIDAVVTKASGEQGGELEKVKAAEALGINVI 227 (256)
T ss_pred HHHHcCCCEEEEcCCCCccchHHHHHHHHHcCCcEE
Confidence 566678898888544322 2 488899999874
No 297
>PRK06523 short chain dehydrogenase; Provisional
Probab=35.22 E-value=1.2e+02 Score=23.18 Aligned_cols=20 Identities=5% Similarity=0.062 Sum_probs=16.7
Q ss_pred HHHHHHHHHHCCCEEEEEeC
Q 039991 52 IVDMAKLFVTRGVKASVITT 71 (172)
Q Consensus 52 ~l~La~~La~rGh~Vt~it~ 71 (172)
-..+++.|+++|++|.++.-
T Consensus 22 G~~ia~~l~~~G~~v~~~~r 41 (260)
T PRK06523 22 GAATVARLLEAGARVVTTAR 41 (260)
T ss_pred hHHHHHHHHHCCCEEEEEeC
Confidence 36899999999999887764
No 298
>PRK07952 DNA replication protein DnaC; Validated
Probab=35.19 E-value=59 Score=25.61 Aligned_cols=41 Identities=15% Similarity=0.117 Sum_probs=34.6
Q ss_pred ceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCChh
Q 039991 36 LHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPANTP 76 (172)
Q Consensus 36 ~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~ 76 (172)
..+++...||.|--.-...+|..|..+|+.|.+++......
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~ 140 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMS 140 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHH
Confidence 36788888999988889999999999999999998765433
No 299
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=35.10 E-value=45 Score=28.19 Aligned_cols=30 Identities=40% Similarity=0.459 Sum_probs=22.1
Q ss_pred HHHhhhCCCCEEEecCCCccHHHHHHHhCCCCC
Q 039991 140 EQLLRDHKPDCLVADIFFPWATDAAAKFGIPRL 172 (172)
Q Consensus 140 ~~ll~~~~~d~VI~D~~~~~a~~vA~~lgiP~v 172 (172)
++.+++.+||++|.... ...+|+++|+|.+
T Consensus 349 ~~~i~~~~pDl~ig~s~---~~~~a~~~gip~~ 378 (410)
T cd01968 349 KKLLKEKKADLLVAGGK---ERYLALKLGIPFC 378 (410)
T ss_pred HHHHhhcCCCEEEECCc---chhhHHhcCCCEE
Confidence 34455568999998843 4588999999964
No 300
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=35.05 E-value=40 Score=27.70 Aligned_cols=33 Identities=15% Similarity=0.109 Sum_probs=23.0
Q ss_pred eEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCC
Q 039991 37 HVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTP 72 (172)
Q Consensus 37 ~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~ 72 (172)
.-+++...+.| =--+.|++||+||.+|.+++=.
T Consensus 50 ~WAVVTGaTDG---IGKayA~eLAkrG~nvvLIsRt 82 (312)
T KOG1014|consen 50 SWAVVTGATDG---IGKAYARELAKRGFNVVLISRT 82 (312)
T ss_pred CEEEEECCCCc---chHHHHHHHHHcCCEEEEEeCC
Confidence 55666544443 1257899999999998777743
No 301
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=34.95 E-value=57 Score=24.40 Aligned_cols=33 Identities=18% Similarity=0.236 Sum_probs=26.1
Q ss_pred CccchHH-HHHHHHHHHH-CCCEEEEEeCCCChhh
Q 039991 45 AHGHMIP-IVDMAKLFVT-RGVKASVITTPANTPY 77 (172)
Q Consensus 45 ~~GH~~P-~l~La~~La~-rGh~Vt~it~~~~~~~ 77 (172)
|.||... ...+.++|.+ +|++|.++.++.....
T Consensus 8 Gsg~~l~e~v~~l~~L~~~~g~eV~vv~S~~A~~v 42 (174)
T TIGR02699 8 GSGDKLPETYSIMKDVKNRYGDEIDVFLSKAGEQV 42 (174)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCEEEEEECHhHHHH
Confidence 4588865 8899999985 5999999999865543
No 302
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=34.86 E-value=40 Score=29.14 Aligned_cols=30 Identities=30% Similarity=0.623 Sum_probs=22.1
Q ss_pred HHHhhhCCCCEEEecCCCccHHHHHHHhCCCCC
Q 039991 140 EQLLRDHKPDCLVADIFFPWATDAAAKFGIPRL 172 (172)
Q Consensus 140 ~~ll~~~~~d~VI~D~~~~~a~~vA~~lgiP~v 172 (172)
++++++.+||++|.... ...+|+++|||++
T Consensus 388 ~~~i~~~~pDllig~~~---~~~~a~k~gip~~ 417 (457)
T TIGR01284 388 EEIIEKYKPDIILTGIR---EGELAKKLGVPYI 417 (457)
T ss_pred HHHHHhcCCCEEEecCC---cchhhhhcCCCEE
Confidence 34455568999997753 4679999999974
No 303
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=34.66 E-value=88 Score=24.06 Aligned_cols=18 Identities=11% Similarity=0.032 Sum_probs=15.5
Q ss_pred HHHHHHHHHCCCEEEEEe
Q 039991 53 VDMAKLFVTRGVKASVIT 70 (172)
Q Consensus 53 l~La~~La~rGh~Vt~it 70 (172)
.++|++|+++|++|.+..
T Consensus 23 ~a~a~~la~~G~~Vi~~~ 40 (252)
T PRK06079 23 WGCAQAIKDQGATVIYTY 40 (252)
T ss_pred HHHHHHHHHCCCEEEEec
Confidence 789999999999988764
No 304
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=34.53 E-value=35 Score=26.85 Aligned_cols=19 Identities=5% Similarity=0.130 Sum_probs=16.5
Q ss_pred HHHHHHHHCCCEEEEEeCC
Q 039991 54 DMAKLFVTRGVKASVITTP 72 (172)
Q Consensus 54 ~La~~La~rGh~Vt~it~~ 72 (172)
-+|..|++.||+||++.-.
T Consensus 5 ~~a~~L~~~G~~V~l~~r~ 23 (293)
T TIGR00745 5 LYGAYLARAGHDVTLLARG 23 (293)
T ss_pred HHHHHHHhCCCcEEEEecH
Confidence 4788899999999999864
No 305
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=34.39 E-value=49 Score=25.66 Aligned_cols=29 Identities=10% Similarity=0.137 Sum_probs=21.9
Q ss_pred CccchHHHHHHHHHHHHCCCEEEEEeCCCCh
Q 039991 45 AHGHMIPIVDMAKLFVTRGVKASVITTPANT 75 (172)
Q Consensus 45 ~~GH~~P~l~La~~La~rGh~Vt~it~~~~~ 75 (172)
|.|++- -.||++|+..||+|++.+.....
T Consensus 8 GtGniG--~alA~~~a~ag~eV~igs~r~~~ 36 (211)
T COG2085 8 GTGNIG--SALALRLAKAGHEVIIGSSRGPK 36 (211)
T ss_pred ccChHH--HHHHHHHHhCCCeEEEecCCChh
Confidence 445543 46888899999999999877553
No 306
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=34.36 E-value=1.1e+02 Score=19.14 Aligned_cols=34 Identities=21% Similarity=0.316 Sum_probs=26.6
Q ss_pred eEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeC
Q 039991 37 HVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITT 71 (172)
Q Consensus 37 ~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~ 71 (172)
.+++++. ..++..-.+.+++.|.+.|.+|.+-..
T Consensus 3 ~v~ii~~-~~~~~~~a~~~~~~Lr~~g~~v~~d~~ 36 (91)
T cd00860 3 QVVVIPV-TDEHLDYAKEVAKKLSDAGIRVEVDLR 36 (91)
T ss_pred EEEEEee-CchHHHHHHHHHHHHHHCCCEEEEECC
Confidence 4566654 467888899999999999999988543
No 307
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=34.31 E-value=88 Score=23.33 Aligned_cols=35 Identities=26% Similarity=0.363 Sum_probs=24.6
Q ss_pred HHHHHhhhCCCCEEEecCC--CccHHHHHHHhCCCCC
Q 039991 138 PLEQLLRDHKPDCLVADIF--FPWATDAAAKFGIPRL 172 (172)
Q Consensus 138 ~l~~ll~~~~~d~VI~D~~--~~~a~~vA~~lgiP~v 172 (172)
.+.+...+.++|.|+.=.- ...|..+|.++|+|.|
T Consensus 44 ~~~~~~~~~~id~Iv~iea~Gi~~a~~vA~~Lgvp~v 80 (179)
T COG0503 44 ELAERYKDDGIDKIVTIEARGIPLAAAVALELGVPFV 80 (179)
T ss_pred HHHHHhcccCCCEEEEEccccchhHHHHHHHhCCCEE
Confidence 4455555567998876432 3447899999999974
No 308
>PF10657 RC-P840_PscD: Photosystem P840 reaction centre protein PscD; InterPro: IPR019608 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. The photosynthetic reaction centres (RCs) of aerotolerant organisms contain a heterodimeric core, built up of two strongly homologous polypeptides each of which contributes five transmembrane peptide helices to hold a pseudo-symmetric double set of redox components. Two molecules of PscD are housed within a subunit. PscD may be involved in stabilising the PscB component since it is found to co-precipitate with FMO (Fenna-Mathews-Olson BChl a-protein) and PscB. It may also be involved in the interaction with ferredoxin [].
Probab=34.19 E-value=68 Score=22.71 Aligned_cols=40 Identities=18% Similarity=0.322 Sum_probs=36.4
Q ss_pred cceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCC
Q 039991 35 QLHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPAN 74 (172)
Q Consensus 35 ~~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~ 74 (172)
+..|-+.|..|.+.+.|.-++.+.|.+.-.++.++++...
T Consensus 46 ~Lql~i~pasGrrkLspt~emi~~l~~geIel~VLttqpD 85 (144)
T PF10657_consen 46 KLQLTISPASGRRKLSPTPEMIDKLISGEIELFVLTTQPD 85 (144)
T ss_pred ceEEEEecCCCccccCCcHHHHHHHhcCceEEEEEccCCC
Confidence 4678899999999999999999999999999999998754
No 309
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=34.11 E-value=1.1e+02 Score=27.48 Aligned_cols=37 Identities=16% Similarity=0.251 Sum_probs=32.5
Q ss_pred cceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeC
Q 039991 35 QLHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITT 71 (172)
Q Consensus 35 ~~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~ 71 (172)
+.-|.|+.+.+.|--.-+..|.++|.+||.+|-++-.
T Consensus 10 ~~vi~ivG~s~sGKTTlie~li~~L~~~G~rVavIKh 46 (597)
T PRK14491 10 IPLLGFCAYSGTGKTTLLEQLIPELNQRGLRLAVIKH 46 (597)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHHHHhCCceEEEEEc
Confidence 3455699999999999999999999999999998875
No 310
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=34.08 E-value=91 Score=23.64 Aligned_cols=39 Identities=13% Similarity=0.251 Sum_probs=34.8
Q ss_pred cceEEEEcCCCccchHHHHHHHHHHH-HCCCEEEEEeCCC
Q 039991 35 QLHVFFFPFMAHGHMIPIVDMAKLFV-TRGVKASVITTPA 73 (172)
Q Consensus 35 ~~~Ilv~p~p~~GH~~P~l~La~~La-~rGh~Vt~it~~~ 73 (172)
..|++++...|.|--+-+..|.++|. ..|..|.++=+..
T Consensus 23 ~~H~~I~G~TGsGKS~~~~~ll~~l~~~~~~~~ii~D~~G 62 (229)
T PF01935_consen 23 NRHIAIFGTTGSGKSNTVKVLLEELLKKKGAKVIIFDPHG 62 (229)
T ss_pred cceEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEcCCC
Confidence 47999999999999999999999999 8888888877664
No 311
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=34.05 E-value=74 Score=22.30 Aligned_cols=31 Identities=10% Similarity=0.298 Sum_probs=17.0
Q ss_pred eEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCC
Q 039991 37 HVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTP 72 (172)
Q Consensus 37 ~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~ 72 (172)
.++++. +-|.+.|. ++.|.++|.+|.+++..
T Consensus 102 ~ivLvS--gD~Df~~~---i~~lr~~G~~V~v~~~~ 132 (149)
T cd06167 102 TIVLVS--GDSDFVPL---VERLRELGKRVIVVGFE 132 (149)
T ss_pred EEEEEE--CCccHHHH---HHHHHHcCCEEEEEccC
Confidence 344444 45555443 34444557777777766
No 312
>PRK10037 cell division protein; Provisional
Probab=34.05 E-value=97 Score=24.01 Aligned_cols=37 Identities=14% Similarity=-0.032 Sum_probs=28.6
Q ss_pred eEEEEcCCCc-cchHHHHHHHHHHHHCCCEEEEEeCCC
Q 039991 37 HVFFFPFMAH-GHMIPIVDMAKLFVTRGVKASVITTPA 73 (172)
Q Consensus 37 ~Ilv~p~p~~-GH~~P~l~La~~La~rGh~Vt~it~~~ 73 (172)
.|.+...-|. |--.-...||..|+++|++|-++=...
T Consensus 3 ~iav~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~D~ 40 (250)
T PRK10037 3 ILGLQGVRGGVGTTSITAALAWSLQMLGENVLVIDACP 40 (250)
T ss_pred EEEEecCCCCccHHHHHHHHHHHHHhcCCcEEEEeCCh
Confidence 3445544444 888889999999999999999996654
No 313
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=34.01 E-value=69 Score=22.59 Aligned_cols=31 Identities=10% Similarity=0.237 Sum_probs=26.4
Q ss_pred EEEEcCCCccchHHHHHHHHHHHHC-CCEEEE
Q 039991 38 VFFFPFMAHGHMIPIVDMAKLFVTR-GVKASV 68 (172)
Q Consensus 38 Ilv~p~p~~GH~~P~l~La~~La~r-Gh~Vt~ 68 (172)
++.++.-...|..-+++||..|.+. |.+|.+
T Consensus 4 fI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~l 35 (150)
T PF08357_consen 4 FISYSHDSEEHKEWVLALAEFLRQNCGIDVIL 35 (150)
T ss_pred EEEeCCCCHHHHHHHHHHHHHHHhccCCceee
Confidence 3466666679999999999999999 999986
No 314
>PRK05802 hypothetical protein; Provisional
Probab=33.93 E-value=86 Score=25.68 Aligned_cols=38 Identities=18% Similarity=0.105 Sum_probs=28.7
Q ss_pred eEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCChh
Q 039991 37 HVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPANTP 76 (172)
Q Consensus 37 ~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~ 76 (172)
+++++. +-.=+.|++.+++.|.++|.+|+++-.....+
T Consensus 174 ~~llIa--GGiGIaPl~~l~~~l~~~~~~v~li~g~r~~~ 211 (320)
T PRK05802 174 KSLVIA--RGIGQAPGVPVIKKLYSNGNKIIVIIDKGPFK 211 (320)
T ss_pred eEEEEE--eEEeHHHHHHHHHHHHHcCCcEEEEEeCCCHH
Confidence 455554 44458899999999999999999887765543
No 315
>PTZ00445 p36-lilke protein; Provisional
Probab=33.84 E-value=47 Score=25.89 Aligned_cols=28 Identities=21% Similarity=0.281 Sum_probs=23.8
Q ss_pred cchHH-HHHHHHHHHHCCCEEEEEeCCCC
Q 039991 47 GHMIP-IVDMAKLFVTRGVKASVITTPAN 74 (172)
Q Consensus 47 GH~~P-~l~La~~La~rGh~Vt~it~~~~ 74 (172)
+|..| +..+.++|.+.|..|+++|-.+.
T Consensus 74 ~~~tpefk~~~~~l~~~~I~v~VVTfSd~ 102 (219)
T PTZ00445 74 TSVTPDFKILGKRLKNSNIKISVVTFSDK 102 (219)
T ss_pred ccCCHHHHHHHHHHHHCCCeEEEEEccch
Confidence 55666 88999999999999999997755
No 316
>TIGR01860 VNFD nitrogenase vanadium-iron protein, alpha chain. This model represents the alpha chain of the vanadium-containing component of the vanadium-iron nitrogenase compound I. The complex also includes a second alpha chain, two beta chains and two delta chains. Compount I interacts with compound II also known as the iron-protein which transfers electrons to compound I where the catalysis occurs.
Probab=33.82 E-value=47 Score=28.73 Aligned_cols=27 Identities=26% Similarity=0.347 Sum_probs=20.4
Q ss_pred hhhCCCCEEEecCCCccHHHHHHHhCCCCC
Q 039991 143 LRDHKPDCLVADIFFPWATDAAAKFGIPRL 172 (172)
Q Consensus 143 l~~~~~d~VI~D~~~~~a~~vA~~lgiP~v 172 (172)
+++.++|++|... ....+|+++|||.+
T Consensus 393 ~~~~~pDliig~s---~~~~~A~klgiP~v 419 (461)
T TIGR01860 393 LDLIKPDVIFTGP---RVGELVKKLHIPYV 419 (461)
T ss_pred HHhcCCCEEEeCC---cchhhHhhcCCCEE
Confidence 3445899998775 34679999999974
No 317
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=33.80 E-value=1.1e+02 Score=24.57 Aligned_cols=39 Identities=13% Similarity=0.123 Sum_probs=31.6
Q ss_pred cceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCC
Q 039991 35 QLHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPA 73 (172)
Q Consensus 35 ~~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~ 73 (172)
+.+|.|+.=.|.|--.-...||..|+++|.+|-++-...
T Consensus 4 ~~~iai~~KGGvGKTt~~~nLa~~la~~g~kVLliD~D~ 42 (295)
T PRK13234 4 LRQIAFYGKGGIGKSTTSQNTLAALVEMGQKILIVGCDP 42 (295)
T ss_pred ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeccc
Confidence 345667666677889999999999999999999995543
No 318
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=33.78 E-value=63 Score=25.38 Aligned_cols=38 Identities=16% Similarity=0.286 Sum_probs=29.7
Q ss_pred EEEEcCCCccchHHHHHHHHHHHHCC--CEEEEEeCCCChhh
Q 039991 38 VFFFPFMAHGHMIPIVDMAKLFVTRG--VKASVITTPANTPY 77 (172)
Q Consensus 38 Ilv~p~p~~GH~~P~l~La~~La~rG--h~Vt~it~~~~~~~ 77 (172)
|+++. +.-=+.|+.++++++.+.| .+|+++........
T Consensus 110 vllia--gGtG~aPl~~i~~~~~~~~~~~~V~~~~G~~~~~d 149 (252)
T COG0543 110 VLLIA--GGTGIAPLYAIAKELKEKGDANKVTLLYGARTAKD 149 (252)
T ss_pred EEEEe--cccCHhHHHHHHHHHHhcCCCceEEEEEeccChhh
Confidence 56554 4444679999999999999 99999998765443
No 319
>PRK14099 glycogen synthase; Provisional
Probab=33.55 E-value=64 Score=27.99 Aligned_cols=39 Identities=15% Similarity=0.255 Sum_probs=29.0
Q ss_pred cceEEEE-----cCCCccch-HHHHHHHHHHHHCCCEEEEEeCCC
Q 039991 35 QLHVFFF-----PFMAHGHM-IPIVDMAKLFVTRGVKASVITTPA 73 (172)
Q Consensus 35 ~~~Ilv~-----p~p~~GH~-~P~l~La~~La~rGh~Vt~it~~~ 73 (172)
.++|+++ |+.=.|=+ .-+-.|.++|+++||+|.++.|.-
T Consensus 3 ~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~y 47 (485)
T PRK14099 3 PLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVPGY 47 (485)
T ss_pred CcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 3566644 44444444 678899999999999999999864
No 320
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=33.26 E-value=96 Score=25.82 Aligned_cols=35 Identities=26% Similarity=0.316 Sum_probs=21.7
Q ss_pred HHHHHHhhhCCCCEEEecCCCccHHHHH--HHhCCCC
Q 039991 137 EPLEQLLRDHKPDCLVADIFFPWATDAA--AKFGIPR 171 (172)
Q Consensus 137 ~~l~~ll~~~~~d~VI~D~~~~~a~~vA--~~lgiP~ 171 (172)
..+.+++++.+||+||+.........+. ..+++|.
T Consensus 94 ~~l~~~l~~~kPDvVi~~~p~~~~~~l~~~~~~~iP~ 130 (391)
T PRK13608 94 NKLINLLIKEKPDLILLTFPTPVMSVLTEQFNINIPV 130 (391)
T ss_pred HHHHHHHHHhCcCEEEECCcHHHHHHHHHhcCCCCCE
Confidence 4566678888999999974433222222 3457886
No 321
>PF04609 MCR_C: Methyl-coenzyme M reductase operon protein C; InterPro: IPR007687 Methyl-coenzyme M reductase (MCR) catalyses the reduction of methyl-coenzyme M (CH3-SCoM) and coenzyme B (HS-CoB) to methane and the corresponding heterosulphide CoM-S-S-CoB (2.8.4.1 from EC), the final step in methane biosynthesis. This reaction proceeds under anaerobic conditions by methanogenic Archaea [], and requires a nickel-porphinoid prosthetic group, coenzyme F430, which is in the EPR-detectable Ni(I) oxidation state in the active enzyme. Studies on a catalytically inactive enzyme aerobically co-crystallized with coenzyme M displayed a fully occupied coenzyme M-binding site with no alternate conformations. The binding of coenzyme M appears to induce specific conformational changes that suggests a molecular mechanism by which the enzyme ensures that methyl-coenzyme M enters the substrate channel prior to coenzyme B, as required by the active-site geometry []. MCR is a hexamer composed of 2 alpha, 2 beta, and 2 gamma subunits with two identical nickel porphinoid active sites, which form two long active site channels with F430 embedded at the bottom [, ]. Genes encoding the beta (mcrB) and gamma (mcrG) subunits of MCR are separated by two open reading frames coding for two proteins C and D [, ]. The function of proteins C and D is unknown. This entry represents protein C.; GO: 0003824 catalytic activity, 0015948 methanogenesis
Probab=33.11 E-value=50 Score=26.41 Aligned_cols=35 Identities=17% Similarity=0.261 Sum_probs=29.9
Q ss_pred ceEEEEcCCCccch-HHHHHHHHHHHHCCCEEEEEe
Q 039991 36 LHVFFFPFMAHGHM-IPIVDMAKLFVTRGVKASVIT 70 (172)
Q Consensus 36 ~~Ilv~p~p~~GH~-~P~l~La~~La~rGh~Vt~it 70 (172)
--+++.|+|+.=|+ -|...++..|.+.|.+..++.
T Consensus 72 eV~vVamS~gr~Hl~~pvCdIt~~LRr~G~~tn~i~ 107 (268)
T PF04609_consen 72 EVAVVAMSPGRRHLPKPVCDITEYLRRAGAKTNMIG 107 (268)
T ss_pred cEEEEeCCcccccCCCcHHHHHHHHHHcCCccceEE
Confidence 45678999999999 699999999999998766654
No 322
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=32.95 E-value=52 Score=28.85 Aligned_cols=23 Identities=9% Similarity=0.055 Sum_probs=19.1
Q ss_pred HHHHHHHHHHCCCEEEEEeCCCC
Q 039991 52 IVDMAKLFVTRGVKASVITTPAN 74 (172)
Q Consensus 52 ~l~La~~La~rGh~Vt~it~~~~ 74 (172)
-+.=|.+|+++||+||++-..+.
T Consensus 12 gL~~a~~La~~g~~vt~~ea~~~ 34 (485)
T COG3349 12 GLAAAYELADAGYDVTLYEARDR 34 (485)
T ss_pred HHHHHHHHHhCCCceEEEeccCc
Confidence 36678999999999999987654
No 323
>PRK08309 short chain dehydrogenase; Provisional
Probab=32.70 E-value=73 Score=23.64 Aligned_cols=30 Identities=23% Similarity=0.398 Sum_probs=21.2
Q ss_pred eEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeC
Q 039991 37 HVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITT 71 (172)
Q Consensus 37 ~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~ 71 (172)
+++++.. .| +. ..+++.|+++|++|++++-
T Consensus 2 ~vlVtGG--tG-~g--g~la~~L~~~G~~V~v~~R 31 (177)
T PRK08309 2 HALVIGG--TG-ML--KRVSLWLCEKGFHVSVIAR 31 (177)
T ss_pred EEEEECc--CH-HH--HHHHHHHHHCcCEEEEEEC
Confidence 4555542 24 33 4699999999999998864
No 324
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=32.56 E-value=1.7e+02 Score=20.39 Aligned_cols=37 Identities=19% Similarity=0.245 Sum_probs=26.8
Q ss_pred cCCCccchHHHHHHHHHHHHCCCEEEEEeCCCChhhh
Q 039991 42 PFMAHGHMIPIVDMAKLFVTRGVKASVITTPANTPYV 78 (172)
Q Consensus 42 p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~ 78 (172)
|.++.|=-.-.+.||+.|+++|++|.++-.......+
T Consensus 8 ~~~g~G~t~~a~~lA~~la~~~~~Vllid~~~~~~~~ 44 (157)
T PF13614_consen 8 PKGGVGKTTLALNLAAALARKGKKVLLIDFDFFSPSL 44 (157)
T ss_dssp SSTTSSHHHHHHHHHHHHHHTTT-EEEEE--SSS-HH
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEECCCCCCCc
Confidence 3666788889999999999999998888877654433
No 325
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=32.54 E-value=53 Score=23.16 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHCCCEEEEEeCCC
Q 039991 51 PIVDMAKLFVTRGVKASVITTPA 73 (172)
Q Consensus 51 P~l~La~~La~rGh~Vt~it~~~ 73 (172)
-++..|++|+++|++|+..-...
T Consensus 24 ~~~~VA~~L~e~g~dv~atDI~~ 46 (129)
T COG1255 24 FFLDVAKRLAERGFDVLATDINE 46 (129)
T ss_pred hHHHHHHHHHHcCCcEEEEeccc
Confidence 46789999999999988876653
No 326
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=32.50 E-value=93 Score=23.96 Aligned_cols=20 Identities=15% Similarity=0.145 Sum_probs=16.4
Q ss_pred HHHHHHHHHHCCCEEEEEeC
Q 039991 52 IVDMAKLFVTRGVKASVITT 71 (172)
Q Consensus 52 ~l~La~~La~rGh~Vt~it~ 71 (172)
-..++++|+++|++|.++..
T Consensus 23 G~~ia~~l~~~G~~vv~~~~ 42 (265)
T PRK07097 23 GFAIAKAYAKAGATIVFNDI 42 (265)
T ss_pred HHHHHHHHHHCCCeEEEEeC
Confidence 47899999999999877743
No 327
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=32.44 E-value=1.3e+02 Score=21.53 Aligned_cols=36 Identities=14% Similarity=0.159 Sum_probs=31.9
Q ss_pred EEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCC
Q 039991 38 VFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPA 73 (172)
Q Consensus 38 Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~ 73 (172)
+.+...+|.|--..+..++..|..+|.+|.++....
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~ 37 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRARGKRVAVLAIDP 37 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCC
Confidence 567777889999999999999999999999988774
No 328
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=32.31 E-value=1e+02 Score=23.23 Aligned_cols=37 Identities=16% Similarity=0.136 Sum_probs=23.7
Q ss_pred HHHHHHHhhhCCCCEEEecCCC--ccHHHHHHHhCCCCC
Q 039991 136 QEPLEQLLRDHKPDCLVADIFF--PWATDAAAKFGIPRL 172 (172)
Q Consensus 136 ~~~l~~ll~~~~~d~VI~D~~~--~~a~~vA~~lgiP~v 172 (172)
...+.+.+++.++|+|+.=... +.|..+|..+|+|.+
T Consensus 39 ~~~la~~~~~~~~D~Ivg~e~~GiplA~~lA~~Lg~p~v 77 (189)
T PRK09219 39 GKEFARRFKDEGITKILTIEASGIAPAVMAALALGVPVV 77 (189)
T ss_pred HHHHHHHhccCCCCEEEEEccccHHHHHHHHHHHCCCEE
Confidence 3334444445578988853222 346789999999964
No 329
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=32.03 E-value=48 Score=26.09 Aligned_cols=28 Identities=7% Similarity=0.102 Sum_probs=23.3
Q ss_pred cchHHHHHHHHHHHHCCCEEEEEeCCCC
Q 039991 47 GHMIPIVDMAKLFVTRGVKASVITTPAN 74 (172)
Q Consensus 47 GH~~P~l~La~~La~rGh~Vt~it~~~~ 74 (172)
|--.-+..|+++|+++||.|++++....
T Consensus 16 G~~~~~~~l~~~L~~~~~~v~~~~~~~~ 43 (365)
T cd03809 16 GIGRYARELLRALLKLDPEEVLLLLPGA 43 (365)
T ss_pred cHHHHHHHHHHHHHhcCCceEEEEecCc
Confidence 4445679999999999999999998754
No 330
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=31.91 E-value=97 Score=24.30 Aligned_cols=37 Identities=19% Similarity=0.174 Sum_probs=31.5
Q ss_pred EEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCC
Q 039991 38 VFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPAN 74 (172)
Q Consensus 38 Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~ 74 (172)
+++..-+|.|.-.....+|..++++|.+|-++..+..
T Consensus 3 ~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~ 39 (254)
T cd00550 3 IFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPA 39 (254)
T ss_pred EEEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCc
Confidence 3455567779999999999999999999999998764
No 331
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=31.85 E-value=50 Score=26.92 Aligned_cols=21 Identities=10% Similarity=0.207 Sum_probs=17.6
Q ss_pred HHHHHHHHHCCCEEEEEeCCC
Q 039991 53 VDMAKLFVTRGVKASVITTPA 73 (172)
Q Consensus 53 l~La~~La~rGh~Vt~it~~~ 73 (172)
.+|..+|...||+||+++=..
T Consensus 12 ~~L~~~L~~~gh~v~iltR~~ 32 (297)
T COG1090 12 RALTARLRKGGHQVTILTRRP 32 (297)
T ss_pred HHHHHHHHhCCCeEEEEEcCC
Confidence 467888899999999999654
No 332
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=31.81 E-value=49 Score=24.57 Aligned_cols=30 Identities=13% Similarity=0.283 Sum_probs=26.1
Q ss_pred CccchHHHHHHHHHHHHCCCEEEEEeCCCC
Q 039991 45 AHGHMIPIVDMAKLFVTRGVKASVITTPAN 74 (172)
Q Consensus 45 ~~GH~~P~l~La~~La~rGh~Vt~it~~~~ 74 (172)
.+.|+.-+..-+.+|.++|.+..++.+-..
T Consensus 60 s~~HvPGyi~~a~elksKGVd~iicvSVnD 89 (171)
T KOG0541|consen 60 SSSHVPGYIEKADELKSKGVDEIICVSVND 89 (171)
T ss_pred ccccCchHHHHHHHHHhcCCcEEEEEecCc
Confidence 678999999999999999998887776644
No 333
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=31.77 E-value=46 Score=28.21 Aligned_cols=27 Identities=22% Similarity=0.348 Sum_probs=20.0
Q ss_pred hhhCCCCEEEecCCCccHHHHHHHhCCCCC
Q 039991 143 LRDHKPDCLVADIFFPWATDAAAKFGIPRL 172 (172)
Q Consensus 143 l~~~~~d~VI~D~~~~~a~~vA~~lgiP~v 172 (172)
+++.+||+||..... ..+|+++|||.+
T Consensus 354 ~~~~~pdliig~s~~---~~~a~~lgip~~ 380 (415)
T cd01977 354 LEMLKPDIILTGPRV---GELVKKLHVPYV 380 (415)
T ss_pred HHhcCCCEEEecCcc---chhhhhcCCCEE
Confidence 344589999877643 369999999974
No 334
>cd06559 Endonuclease_V Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases. Endonuclease_V (EndoV) is an enzyme that can initiate repair of all possible deaminated DNA bases. EndoV cleaves the DNA strand containing lesions at the second phosphodiester bond 3' to the lesion using Mg2+ as a cofactor. EndoV homologs are conserved throughout all domains of life from bacteria to humans. EndoV is encoded by the nfi gene and nfi null mutant mice have a phenotype prone to cancer. The ability of endonuclease V to recognize mismatches and abnormal replicative DNA structures suggests that the enzyme plays an important role in DNA metabolism. The details of downstream processing for the EndoV pathway remain unknown.
Probab=31.76 E-value=41 Score=25.95 Aligned_cols=26 Identities=27% Similarity=0.308 Sum_probs=16.5
Q ss_pred CCCEEEecCCCcc---HHHHHHH----hCCCCC
Q 039991 147 KPDCLVADIFFPW---ATDAAAK----FGIPRL 172 (172)
Q Consensus 147 ~~d~VI~D~~~~~---a~~vA~~----lgiP~v 172 (172)
.||+|+.|-.... ...+|.+ +|+|+|
T Consensus 93 ~PDlilVDG~G~~HpR~~GlA~HlGv~l~~PtI 125 (208)
T cd06559 93 KPDLLLVDGHGIAHPRRFGLASHLGVLLDLPTI 125 (208)
T ss_pred CCCEEEEeCCccccCCCcchhheeeeecCCCEE
Confidence 6999999976543 2344544 456653
No 335
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=31.68 E-value=1.9e+02 Score=21.43 Aligned_cols=44 Identities=14% Similarity=0.014 Sum_probs=36.6
Q ss_pred ceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCC-Chhhhh
Q 039991 36 LHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPA-NTPYVS 79 (172)
Q Consensus 36 ~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~-~~~~~~ 79 (172)
.-+.++..||.|--.-.++++...+.+|..|.|+.++. ...++.
T Consensus 13 ~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~ 57 (209)
T TIGR02237 13 TITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFK 57 (209)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHH
Confidence 45668899999999999999999999999999999985 333433
No 336
>PLN00016 RNA-binding protein; Provisional
Probab=31.59 E-value=70 Score=26.45 Aligned_cols=35 Identities=20% Similarity=0.269 Sum_probs=24.6
Q ss_pred cceEEEE----cCCCccchHHHHHHHHHHHHCCCEEEEEeCCC
Q 039991 35 QLHVFFF----PFMAHGHMIPIVDMAKLFVTRGVKASVITTPA 73 (172)
Q Consensus 35 ~~~Ilv~----p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~ 73 (172)
+.+|+++ . +.|.+ -..|++.|+++||+|+.++-..
T Consensus 52 ~~~VLVt~~~~G--atG~i--G~~lv~~L~~~G~~V~~l~R~~ 90 (378)
T PLN00016 52 KKKVLIVNTNSG--GHAFI--GFYLAKELVKAGHEVTLFTRGK 90 (378)
T ss_pred cceEEEEeccCC--CceeE--hHHHHHHHHHCCCEEEEEecCC
Confidence 3568877 4 22333 3567889999999999998653
No 337
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=31.55 E-value=70 Score=20.98 Aligned_cols=39 Identities=10% Similarity=-0.015 Sum_probs=32.3
Q ss_pred cceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCC
Q 039991 35 QLHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPA 73 (172)
Q Consensus 35 ~~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~ 73 (172)
..+++++..||.|--.-+..|++.+...+..+.++....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~ 40 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGED 40 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEE
Confidence 457899999999999999999999988886666666653
No 338
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=31.50 E-value=53 Score=26.52 Aligned_cols=33 Identities=12% Similarity=0.133 Sum_probs=25.9
Q ss_pred cceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCC
Q 039991 35 QLHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTP 72 (172)
Q Consensus 35 ~~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~ 72 (172)
.++|+++...+.|=+ +|-.|++.|++||++.-.
T Consensus 2 ~m~I~IiGaGaiG~~-----~a~~L~~~G~~V~lv~r~ 34 (305)
T PRK05708 2 SMTWHILGAGSLGSL-----WACRLARAGLPVRLILRD 34 (305)
T ss_pred CceEEEECCCHHHHH-----HHHHHHhCCCCeEEEEec
Confidence 367889887777755 566688899999999864
No 339
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=31.40 E-value=50 Score=21.61 Aligned_cols=26 Identities=23% Similarity=0.382 Sum_probs=17.5
Q ss_pred HHHHHHHHHHCCCEEEEEeCCCChhhhh
Q 039991 52 IVDMAKLFVTRGVKASVITTPANTPYVS 79 (172)
Q Consensus 52 ~l~La~~La~rGh~Vt~it~~~~~~~~~ 79 (172)
++++|++|++.|+++ +.+......++
T Consensus 2 ~~~~a~~l~~lG~~i--~AT~gTa~~L~ 27 (95)
T PF02142_consen 2 IVPLAKRLAELGFEI--YATEGTAKFLK 27 (95)
T ss_dssp HHHHHHHHHHTTSEE--EEEHHHHHHHH
T ss_pred HHHHHHHHHHCCCEE--EEChHHHHHHH
Confidence 578999999999654 45554433333
No 340
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=31.37 E-value=1e+02 Score=19.49 Aligned_cols=36 Identities=11% Similarity=0.150 Sum_probs=29.5
Q ss_pred eEEEEcCCCccchHHH-HHHHHHHHHCCCEEEEEeCC
Q 039991 37 HVFFFPFMAHGHMIPI-VDMAKLFVTRGVKASVITTP 72 (172)
Q Consensus 37 ~Ilv~p~p~~GH~~P~-l~La~~La~rGh~Vt~it~~ 72 (172)
+|++++..|.|+-.-. ..+=+.+.++|.+++.....
T Consensus 1 kIlvvC~~Gi~TS~~~~~~i~~~~~~~gi~~~~~~~~ 37 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVANKIKKALKELGIEVEVSAGS 37 (90)
T ss_dssp EEEEEESSSSHHHHHHHHHHHHHHHHTTECEEEEEEE
T ss_pred CEEEECCChHHHHHHHHHHHHHHHHhccCceEEEEec
Confidence 5888888888888777 78888888899888877766
No 341
>PRK06921 hypothetical protein; Provisional
Probab=31.13 E-value=1e+02 Score=24.43 Aligned_cols=39 Identities=10% Similarity=0.093 Sum_probs=33.5
Q ss_pred cceEEEEcCCCccchHHHHHHHHHHHHC-CCEEEEEeCCC
Q 039991 35 QLHVFFFPFMAHGHMIPIVDMAKLFVTR-GVKASVITTPA 73 (172)
Q Consensus 35 ~~~Ilv~p~p~~GH~~P~l~La~~La~r-Gh~Vt~it~~~ 73 (172)
..-++++..+|.|--.-+.++|++|..+ |+.|.+++...
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~ 156 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVE 156 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHH
Confidence 3568899999998888889999999998 99999998754
No 342
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=31.02 E-value=80 Score=23.77 Aligned_cols=33 Identities=33% Similarity=0.572 Sum_probs=19.8
Q ss_pred HHHhhhCCC--CEEEecCCCcc-HHHHHHHhCCCCC
Q 039991 140 EQLLRDHKP--DCLVADIFFPW-ATDAAAKFGIPRL 172 (172)
Q Consensus 140 ~~ll~~~~~--d~VI~D~~~~~-a~~vA~~lgiP~v 172 (172)
++++++... .++|-..+.++ |..+|+++|+|.|
T Consensus 50 ~~~i~~~~~~~~~liGSSlGG~~A~~La~~~~~~av 85 (187)
T PF05728_consen 50 EQLIEELKPENVVLIGSSLGGFYATYLAERYGLPAV 85 (187)
T ss_pred HHHHHhCCCCCeEEEEEChHHHHHHHHHHHhCCCEE
Confidence 445554433 35665555533 6688888888764
No 343
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=30.98 E-value=1.2e+02 Score=24.79 Aligned_cols=39 Identities=18% Similarity=0.303 Sum_probs=30.3
Q ss_pred cceEEEEcCCCc-cchHHHHHHHHHHHHCCCEEEEEeCCC
Q 039991 35 QLHVFFFPFMAH-GHMIPIVDMAKLFVTRGVKASVITTPA 73 (172)
Q Consensus 35 ~~~Ilv~p~p~~-GH~~P~l~La~~La~rGh~Vt~it~~~ 73 (172)
..+|+++..-.. |-..-.+.|.++|.+||.++.|+.|..
T Consensus 112 ~~rv~~vGTDcavGK~tTal~L~~~l~~~G~~a~fvaTGQ 151 (301)
T PF07755_consen 112 AKRVLTVGTDCAVGKMTTALELRRALRERGINAGFVATGQ 151 (301)
T ss_dssp SEEEEEEESSSSSSHHHHHHHHHHHHHHTT--EEEEE-SH
T ss_pred CCEEEEEccCccccHHHHHHHHHHHHHHcCCCceEEecCC
Confidence 457776665554 999999999999999999999999874
No 344
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=30.96 E-value=1.3e+02 Score=20.27 Aligned_cols=32 Identities=19% Similarity=0.258 Sum_probs=27.0
Q ss_pred CCccchHHHHHHHHHHHHCCCEEEEEeCCCCh
Q 039991 44 MAHGHMIPIVDMAKLFVTRGVKASVITTPANT 75 (172)
Q Consensus 44 p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~ 75 (172)
...|.---++..++.+.++|..|..+|.....
T Consensus 55 S~sG~t~~~~~~~~~a~~~g~~vi~iT~~~~s 86 (128)
T cd05014 55 SNSGETDELLNLLPHLKRRGAPIIAITGNPNS 86 (128)
T ss_pred eCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 45577788999999999999999999987653
No 345
>PF14626 RNase_Zc3h12a_2: Zc3h12a-like Ribonuclease NYN domain
Probab=30.85 E-value=75 Score=22.37 Aligned_cols=27 Identities=22% Similarity=0.271 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHCCCEEEEEeCCCChh
Q 039991 50 IPIVDMAKLFVTRGVKASVITTPANTP 76 (172)
Q Consensus 50 ~P~l~La~~La~rGh~Vt~it~~~~~~ 76 (172)
.|+..+.-.+.-+||++|++.|.-+..
T Consensus 10 k~L~eIll~FilrGHKT~vyLP~yY~~ 36 (122)
T PF14626_consen 10 KALVEILLHFILRGHKTVVYLPKYYKN 36 (122)
T ss_pred HHHHHHHHHHHhccCeeEEEChHHHhc
Confidence 477778888888999999999886543
No 346
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=30.79 E-value=1.5e+02 Score=22.54 Aligned_cols=44 Identities=7% Similarity=0.036 Sum_probs=36.7
Q ss_pred ceEEEEcCCCccchHHHHHHHHHHHHC-CCEEEEEeCCCChhhhh
Q 039991 36 LHVFFFPFMAHGHMIPIVDMAKLFVTR-GVKASVITTPANTPYVS 79 (172)
Q Consensus 36 ~~Ilv~p~p~~GH~~P~l~La~~La~r-Gh~Vt~it~~~~~~~~~ 79 (172)
.-+++...|+.|--.-.++++..++.+ |..|.+++.+.....+.
T Consensus 14 ~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~~~ 58 (242)
T cd00984 14 DLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQLL 58 (242)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHHHH
Confidence 355678888999999999999999887 99999999997655443
No 347
>PRK13604 luxD acyl transferase; Provisional
Probab=30.78 E-value=1.3e+02 Score=24.62 Aligned_cols=34 Identities=9% Similarity=0.085 Sum_probs=24.8
Q ss_pred eEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEe
Q 039991 37 HVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVIT 70 (172)
Q Consensus 37 ~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it 70 (172)
..+++.....++-.-+..+|+.|+++|+.|..+=
T Consensus 38 ~~vIi~HGf~~~~~~~~~~A~~La~~G~~vLrfD 71 (307)
T PRK13604 38 NTILIASGFARRMDHFAGLAEYLSSNGFHVIRYD 71 (307)
T ss_pred CEEEEeCCCCCChHHHHHHHHHHHHCCCEEEEec
Confidence 3444444444565669999999999999987764
No 348
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=30.71 E-value=86 Score=28.39 Aligned_cols=55 Identities=13% Similarity=0.193 Sum_probs=43.4
Q ss_pred CchhhhhhhhcCCCCCCCcceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCC
Q 039991 17 SSLSLYLIRKLNMGSEIPQLHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTP 72 (172)
Q Consensus 17 ~~~~~~~~~~~~M~~~~~~~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~ 72 (172)
..+|..|++-+...-. ....+++...||.|--.-..+++..+..+|.+|.++++.
T Consensus 156 ~~ln~~Q~~Av~~~l~-~~~~~lI~GpPGTGKT~t~~~ii~~~~~~g~~VLv~a~s 210 (637)
T TIGR00376 156 PNLNESQKEAVSFALS-SKDLFLIHGPPGTGKTRTLVELIRQLVKRGLRVLVTAPS 210 (637)
T ss_pred CCCCHHHHHHHHHHhc-CCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCc
Confidence 5678888877765431 235677889999999999999999999999988887654
No 349
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=30.71 E-value=1.1e+02 Score=24.57 Aligned_cols=35 Identities=11% Similarity=0.221 Sum_probs=29.0
Q ss_pred eEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCC
Q 039991 37 HVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTP 72 (172)
Q Consensus 37 ~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~ 72 (172)
-|.++.+++.|--.-+..|+++|.++| +|-++-..
T Consensus 3 ~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IKhd 37 (274)
T PRK14493 3 VLSIVGYKATGKTTLVERLVDRLSGRG-RVGTVKHM 37 (274)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEEEc
Confidence 466888888899999999999999999 67766553
No 350
>PRK04148 hypothetical protein; Provisional
Probab=30.71 E-value=58 Score=23.33 Aligned_cols=45 Identities=13% Similarity=0.159 Sum_probs=28.8
Q ss_pred hhhhhhcCCCCCCCcceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCC
Q 039991 21 LYLIRKLNMGSEIPQLHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPAN 74 (172)
Q Consensus 21 ~~~~~~~~M~~~~~~~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~ 74 (172)
-|+.+.+.=. +..+++.+... .| ..+|+.|++.||+|+.+=....
T Consensus 6 ~~l~~~~~~~---~~~kileIG~G-fG-----~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 6 EFIAENYEKG---KNKKIVELGIG-FY-----FKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred HHHHHhcccc---cCCEEEEEEec-CC-----HHHHHHHHHCCCEEEEEECCHH
Confidence 3555555321 23577777544 33 3468889999999999876643
No 351
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it []. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2X0S_A 2OLS_A 2HRO_A 2E28_A 2WQD_A 3T05_D 3T0T_D 3T07_B 2DIK_A 2FM4_A ....
Probab=30.57 E-value=52 Score=20.91 Aligned_cols=26 Identities=27% Similarity=0.290 Sum_probs=19.0
Q ss_pred CCCEEEecCCCcc--HHHHHHHhCCCCC
Q 039991 147 KPDCLVADIFFPW--ATDAAAKFGIPRL 172 (172)
Q Consensus 147 ~~d~VI~D~~~~~--a~~vA~~lgiP~v 172 (172)
+..-||.+.-... +..+|+++|||++
T Consensus 30 ~~~Giv~~~Gg~~SH~aIlAr~~giP~i 57 (80)
T PF00391_consen 30 RVAGIVTEEGGPTSHAAILARELGIPAI 57 (80)
T ss_dssp TSSEEEESSSSTTSHHHHHHHHTT-EEE
T ss_pred heEEEEEEcCCccchHHHHHHHcCCCEE
Confidence 5677888865544 5799999999974
No 352
>PLN02240 UDP-glucose 4-epimerase
Probab=30.53 E-value=1.3e+02 Score=24.23 Aligned_cols=31 Identities=16% Similarity=0.145 Sum_probs=22.4
Q ss_pred ceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEe
Q 039991 36 LHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVIT 70 (172)
Q Consensus 36 ~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it 70 (172)
.+|++.. +.|.+ -..|++.|+++||+|+.+.
T Consensus 6 ~~vlItG--atG~i--G~~l~~~L~~~g~~V~~~~ 36 (352)
T PLN02240 6 RTILVTG--GAGYI--GSHTVLQLLLAGYKVVVID 36 (352)
T ss_pred CEEEEEC--CCChH--HHHHHHHHHHCCCEEEEEe
Confidence 4566654 44555 4467889999999999885
No 353
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=30.50 E-value=1.4e+02 Score=22.92 Aligned_cols=32 Identities=9% Similarity=0.048 Sum_probs=23.0
Q ss_pred cceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEe
Q 039991 35 QLHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVIT 70 (172)
Q Consensus 35 ~~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it 70 (172)
+++|+++...| .--..|++.|+++||+|+.++
T Consensus 17 ~~~ilItGasG----~iG~~l~~~L~~~g~~V~~~~ 48 (251)
T PLN00141 17 TKTVFVAGATG----RTGKRIVEQLLAKGFAVKAGV 48 (251)
T ss_pred CCeEEEECCCc----HHHHHHHHHHHhCCCEEEEEe
Confidence 46788776433 234568888999999998765
No 354
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=30.50 E-value=1.3e+02 Score=23.70 Aligned_cols=38 Identities=16% Similarity=0.243 Sum_probs=27.6
Q ss_pred hHHHHHHHhhhCCCCEEEecCCCcc--HHHHHHHhCCCCC
Q 039991 135 LQEPLEQLLRDHKPDCLVADIFFPW--ATDAAAKFGIPRL 172 (172)
Q Consensus 135 ~~~~l~~ll~~~~~d~VI~D~~~~~--a~~vA~~lgiP~v 172 (172)
+....++.+++.+.|+|+...-... +..+.+.+|||++
T Consensus 162 l~~~~~~a~~edgAeaIiLGCAGms~la~~Lq~~~gvPVI 201 (230)
T COG4126 162 LVIEAAEALKEDGAEAIILGCAGMSDLADQLQKAFGVPVI 201 (230)
T ss_pred HHHHHHHHhhhcCCCEEEEcCccHHHHHHHHHHHhCCCcc
Confidence 4455566777789999998864443 3478888899975
No 355
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=30.47 E-value=1.3e+02 Score=22.92 Aligned_cols=34 Identities=21% Similarity=0.353 Sum_probs=23.5
Q ss_pred ceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCC
Q 039991 36 LHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPAN 74 (172)
Q Consensus 36 ~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~ 74 (172)
.+++++ |.|.+- ..-++.|.+.|.+||++.+...
T Consensus 10 k~vlVv---GgG~va--~rk~~~Ll~~ga~VtVvsp~~~ 43 (205)
T TIGR01470 10 RAVLVV---GGGDVA--LRKARLLLKAGAQLRVIAEELE 43 (205)
T ss_pred CeEEEE---CcCHHH--HHHHHHHHHCCCEEEEEcCCCC
Confidence 466776 344443 6667888888999998887643
No 356
>PRK12828 short chain dehydrogenase; Provisional
Probab=30.43 E-value=1.5e+02 Score=22.05 Aligned_cols=33 Identities=18% Similarity=0.178 Sum_probs=23.1
Q ss_pred ceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCC
Q 039991 36 LHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTP 72 (172)
Q Consensus 36 ~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~ 72 (172)
..+++.. +.|.+ -..+++.|+++|++|..+.-.
T Consensus 8 k~vlItG--atg~i--G~~la~~l~~~G~~v~~~~r~ 40 (239)
T PRK12828 8 KVVAITG--GFGGL--GRATAAWLAARGARVALIGRG 40 (239)
T ss_pred CEEEEEC--CCCcH--hHHHHHHHHHCCCeEEEEeCC
Confidence 3455543 34554 478889999999998777653
No 357
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=30.40 E-value=67 Score=23.43 Aligned_cols=35 Identities=29% Similarity=0.337 Sum_probs=19.6
Q ss_pred HHHHHHhhhCCCCEEEecCCCcc--HHHHHHHhCCCCC
Q 039991 137 EPLEQLLRDHKPDCLVADIFFPW--ATDAAAKFGIPRL 172 (172)
Q Consensus 137 ~~l~~ll~~~~~d~VI~D~~~~~--a~~vA~~lgiP~v 172 (172)
..++++++ .+||+||....... ....-++.|||++
T Consensus 60 ~n~E~ll~-l~PDlii~~~~~~~~~~~~~l~~~gIpvv 96 (186)
T cd01141 60 LNVELIVA-LKPDLVILYGGFQAQTILDKLEQLGIPVL 96 (186)
T ss_pred CCHHHHhc-cCCCEEEEecCCCchhHHHHHHHcCCCEE
Confidence 44555543 57888887543322 2233466788763
No 358
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=30.33 E-value=1.4e+02 Score=21.72 Aligned_cols=35 Identities=17% Similarity=0.349 Sum_probs=30.0
Q ss_pred eEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeC
Q 039991 37 HVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITT 71 (172)
Q Consensus 37 ~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~ 71 (172)
.|.++.+++.|--.-...|.++|..+|++|-++-.
T Consensus 3 vi~i~G~~gsGKTTli~~L~~~l~~~g~~V~~iK~ 37 (159)
T cd03116 3 VIGFVGYSGSGKTTLLEKLIPALSARGLRVAVIKH 37 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEe
Confidence 46788888899999999999999999999877653
No 359
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=30.30 E-value=1.3e+02 Score=23.77 Aligned_cols=34 Identities=15% Similarity=0.308 Sum_probs=24.7
Q ss_pred cceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCC
Q 039991 35 QLHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPA 73 (172)
Q Consensus 35 ~~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~ 73 (172)
+.++++| |.||. ..+|++.+..-|++||++-+..
T Consensus 100 ~~~L~If---GaG~v--a~~la~la~~lGf~V~v~D~R~ 133 (246)
T TIGR02964 100 APHVVLF---GAGHV--GRALVRALAPLPCRVTWVDSRE 133 (246)
T ss_pred CCEEEEE---CCcHH--HHHHHHHHhcCCCEEEEEeCCc
Confidence 4566666 67887 4566666777899999987663
No 360
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=30.30 E-value=1.3e+02 Score=25.01 Aligned_cols=38 Identities=11% Similarity=0.200 Sum_probs=33.3
Q ss_pred cceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCC
Q 039991 35 QLHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTP 72 (172)
Q Consensus 35 ~~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~ 72 (172)
+.-|.++.+++.|--.-+..|.++|.++|++|-++-..
T Consensus 205 ~~~~~~~g~~~~GKtt~~~~l~~~l~~~g~~v~~iKh~ 242 (366)
T PRK14489 205 PPLLGVVGYSGTGKTTLLEKLIPELIARGYRIGLIKHS 242 (366)
T ss_pred ccEEEEecCCCCCHHHHHHHHHHHHHHcCCEEEEEEEC
Confidence 34677999999999999999999999999999998743
No 361
>PRK13768 GTPase; Provisional
Probab=30.18 E-value=1.4e+02 Score=23.48 Aligned_cols=37 Identities=14% Similarity=0.285 Sum_probs=31.7
Q ss_pred eEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCC
Q 039991 37 HVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPA 73 (172)
Q Consensus 37 ~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~ 73 (172)
.+++...+|.|--.-...++..|+.+|++|.++....
T Consensus 4 ~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~ 40 (253)
T PRK13768 4 IVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDP 40 (253)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCC
Confidence 4667777888999989999999999999999998664
No 362
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=30.10 E-value=56 Score=25.93 Aligned_cols=20 Identities=15% Similarity=0.248 Sum_probs=17.6
Q ss_pred HHHHHHHHHCCCEEEEEeCC
Q 039991 53 VDMAKLFVTRGVKASVITTP 72 (172)
Q Consensus 53 l~La~~La~rGh~Vt~it~~ 72 (172)
+..|..|+++|++|+++-..
T Consensus 12 ~~~A~~La~~G~~V~l~e~~ 31 (358)
T PF01266_consen 12 LSTAYELARRGHSVTLLERG 31 (358)
T ss_dssp HHHHHHHHHTTSEEEEEESS
T ss_pred HHHHHHHHHCCCeEEEEeec
Confidence 56788899999999999877
No 363
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=30.04 E-value=1.6e+02 Score=21.95 Aligned_cols=38 Identities=8% Similarity=0.038 Sum_probs=30.7
Q ss_pred ceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCC
Q 039991 36 LHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPA 73 (172)
Q Consensus 36 ~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~ 73 (172)
...++...||.|.-.-+..+.+.+..+|.+|.++++..
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~ 56 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTN 56 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSH
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcH
Confidence 34566788999999999999999999999999998774
No 364
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=29.98 E-value=88 Score=26.39 Aligned_cols=31 Identities=13% Similarity=0.176 Sum_probs=22.7
Q ss_pred eEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCC
Q 039991 37 HVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTP 72 (172)
Q Consensus 37 ~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~ 72 (172)
+|.++. -|.+- +.+|..|+++||+|+.+...
T Consensus 2 kI~vIG---lG~~G--~~lA~~La~~G~~V~~~d~~ 32 (411)
T TIGR03026 2 KIAVIG---LGYVG--LPLAALLADLGHEVTGVDID 32 (411)
T ss_pred EEEEEC---CCchh--HHHHHHHHhcCCeEEEEECC
Confidence 566664 44442 57888899999999998654
No 365
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=29.97 E-value=87 Score=22.70 Aligned_cols=26 Identities=31% Similarity=0.534 Sum_probs=20.2
Q ss_pred HhHHHHHHHhhhCCCCEEEecCCCcc
Q 039991 134 KLQEPLEQLLRDHKPDCLVADIFFPW 159 (172)
Q Consensus 134 ~~~~~l~~ll~~~~~d~VI~D~~~~~ 159 (172)
.....+.+++++.+||+||+=..+..
T Consensus 76 ~~~~~l~~~l~~~~PD~IIsThp~~~ 101 (169)
T PF06925_consen 76 LFARRLIRLLREFQPDLIISTHPFPA 101 (169)
T ss_pred HHHHHHHHHHhhcCCCEEEECCcchh
Confidence 34457888899999999999876543
No 366
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=29.94 E-value=1.8e+02 Score=22.00 Aligned_cols=47 Identities=9% Similarity=-0.042 Sum_probs=37.2
Q ss_pred cceEEEEcCCCccchHHHHHHHHHHHHC-CCEEEEEeCCCChhhhhhh
Q 039991 35 QLHVFFFPFMAHGHMIPIVDMAKLFVTR-GVKASVITTPANTPYVSKS 81 (172)
Q Consensus 35 ~~~Ilv~p~p~~GH~~P~l~La~~La~r-Gh~Vt~it~~~~~~~~~~~ 81 (172)
..-+++...||.|--.-.++++.+-+.+ |..|.+++.....+.+...
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~ 66 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIEN 66 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHH
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHH
Confidence 4578899999999999999999888888 9999999998876665544
No 367
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=29.79 E-value=69 Score=25.63 Aligned_cols=32 Identities=9% Similarity=0.200 Sum_probs=23.2
Q ss_pred ceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCC
Q 039991 36 LHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTP 72 (172)
Q Consensus 36 ~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~ 72 (172)
++|+|+.....| ..+|..|+++||+|+++...
T Consensus 2 mkI~iiG~G~mG-----~~~a~~L~~~g~~V~~~~r~ 33 (325)
T PRK00094 2 MKIAVLGAGSWG-----TALAIVLARNGHDVTLWARD 33 (325)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhCCCEEEEEECC
Confidence 467777544334 45778899999999998764
No 368
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=29.76 E-value=1.2e+02 Score=21.89 Aligned_cols=33 Identities=15% Similarity=0.186 Sum_probs=27.2
Q ss_pred CCCccchHHHHHHHHHHHHCCCEEEEEeCCCCh
Q 039991 43 FMAHGHMIPIVDMAKLFVTRGVKASVITTPANT 75 (172)
Q Consensus 43 ~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~ 75 (172)
-.|.|--.-...||..|+.+|++|.++-.....
T Consensus 7 kGG~GKTt~a~~la~~la~~g~~VlliD~D~~~ 39 (195)
T PF01656_consen 7 KGGVGKTTIAANLAQALARKGKKVLLIDLDPQA 39 (195)
T ss_dssp STTSSHHHHHHHHHHHHHHTTS-EEEEEESTTS
T ss_pred CCCccHHHHHHHHHhccccccccccccccCccc
Confidence 346688889999999999999999999987553
No 369
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=29.75 E-value=1.4e+02 Score=24.72 Aligned_cols=39 Identities=8% Similarity=0.198 Sum_probs=32.6
Q ss_pred ceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCC
Q 039991 36 LHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPAN 74 (172)
Q Consensus 36 ~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~ 74 (172)
..|++..-+|.|--.-...||..|+.+|.+|-++-....
T Consensus 32 ~ii~v~gkgG~GKSt~a~nLa~~la~~g~rVllid~D~~ 70 (329)
T cd02033 32 QIIAIYGKGGIGKSFTLANLSYMMAQQGKRVLLIGCDPK 70 (329)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeeec
Confidence 356677777789889999999999999999999977644
No 370
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=29.70 E-value=1.6e+02 Score=22.40 Aligned_cols=32 Identities=9% Similarity=0.004 Sum_probs=22.3
Q ss_pred eEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCC
Q 039991 37 HVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTP 72 (172)
Q Consensus 37 ~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~ 72 (172)
.+++.. +.|.+ -..+++.|+++|++|.++...
T Consensus 17 ~vlItG--as~gI--G~~ia~~l~~~G~~v~~~~~~ 48 (258)
T PRK06935 17 VAIVTG--GNTGL--GQGYAVALAKAGADIIITTHG 48 (258)
T ss_pred EEEEeC--CCchH--HHHHHHHHHHCCCEEEEEeCC
Confidence 444443 33444 378899999999999888655
No 371
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=29.60 E-value=63 Score=25.95 Aligned_cols=27 Identities=11% Similarity=0.124 Sum_probs=24.1
Q ss_pred cchHHHHHHHHHHHHCCCEEEEEeCCC
Q 039991 47 GHMIPIVDMAKLFVTRGVKASVITTPA 73 (172)
Q Consensus 47 GH~~P~l~La~~La~rGh~Vt~it~~~ 73 (172)
||+.+.+.....|++.|+++.++....
T Consensus 15 G~~~~al~~~~~lQ~ag~~~~~~IaD~ 41 (280)
T cd00806 15 GHYLGAFRFWVWLQEAGYELFFFIADL 41 (280)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEecch
Confidence 999998999999999999999887764
No 372
>PRK11519 tyrosine kinase; Provisional
Probab=29.57 E-value=1.3e+02 Score=27.55 Aligned_cols=40 Identities=13% Similarity=0.171 Sum_probs=32.0
Q ss_pred cceEEEEc--CCCccchHHHHHHHHHHHHCCCEEEEEeCCCC
Q 039991 35 QLHVFFFP--FMAHGHMIPIVDMAKLFVTRGVKASVITTPAN 74 (172)
Q Consensus 35 ~~~Ilv~p--~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~ 74 (172)
+.+++++. .||.|--.-...||..|+..|++|-++-....
T Consensus 525 ~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~Dlr 566 (719)
T PRK11519 525 QNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMR 566 (719)
T ss_pred CceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 44555444 46779999999999999999999999987654
No 373
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=29.57 E-value=85 Score=25.94 Aligned_cols=38 Identities=18% Similarity=0.011 Sum_probs=0.0
Q ss_pred hHHHHHHHhhhCCCCEEEecCCCc---cHHHHHHHh-----CCCCC
Q 039991 135 LQEPLEQLLRDHKPDCLVADIFFP---WATDAAAKF-----GIPRL 172 (172)
Q Consensus 135 ~~~~l~~ll~~~~~d~VI~D~~~~---~a~~vA~~l-----giP~v 172 (172)
+...+.+++++.+||+|++...+. .+..++... ++|++
T Consensus 88 ~~~~l~~~i~~~~pDvIi~thp~~~~~~~~~l~~~~~~~~~~~p~~ 133 (382)
T PLN02605 88 VAREVAKGLMKYKPDIIVSVHPLMQHVPLRVLRWQGKELGKKIPFT 133 (382)
T ss_pred HHHHHHHHHHhcCcCEEEEeCcCcccCHHHHHHHHhhccCCCCCEE
No 374
>PF08026 Antimicrobial_5: Bee antimicrobial peptide; InterPro: IPR012524 This entry represents antimicrobial peptides produced by bees. These peptides have strong antimicrobial and some anti-fungal activity and has homology to abaecin which is the largest proline-rich antimicrobial peptide isolated from European bumblebee Bombus pascuorum [].; GO: 0042381 hemolymph coagulation, 0005576 extracellular region
Probab=29.48 E-value=6.4 Score=21.38 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=14.4
Q ss_pred EEcCCCccchHHHHHHHHHHHHCC
Q 039991 40 FFPFMAHGHMIPIVDMAKLFVTRG 63 (172)
Q Consensus 40 v~p~p~~GH~~P~l~La~~La~rG 63 (172)
+=.+|++|-+||-.++---|-..|
T Consensus 15 FPTFPGqGP~NPKir~Pyplpn~g 38 (39)
T PF08026_consen 15 FPTFPGQGPFNPKIRWPYPLPNPG 38 (39)
T ss_pred CCcCCCCCCCCccccccccCCCCC
Confidence 345778888888665544333333
No 375
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=29.40 E-value=75 Score=27.18 Aligned_cols=26 Identities=8% Similarity=0.067 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHCCCEEEEEeCCCChh
Q 039991 51 PIVDMAKLFVTRGVKASVITTPANTP 76 (172)
Q Consensus 51 P~l~La~~La~rGh~Vt~it~~~~~~ 76 (172)
....|.++|.+.||+|++++..-...
T Consensus 342 ta~~l~~~m~~~Gh~V~~l~G~l~~~ 367 (477)
T KOG0332|consen 342 TAMWLYEEMRAEGHQVSLLHGDLTVE 367 (477)
T ss_pred hHHHHHHHHHhcCceeEEeeccchhH
Confidence 56778999999999999999986543
No 376
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=29.38 E-value=82 Score=22.69 Aligned_cols=32 Identities=16% Similarity=0.139 Sum_probs=26.9
Q ss_pred cCCCccchHHHHHHHHHHHHCCCEEEEEeCCC
Q 039991 42 PFMAHGHMIPIVDMAKLFVTRGVKASVITTPA 73 (172)
Q Consensus 42 p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~ 73 (172)
+-+|.|--.-...||..|+++|++|.++-.+.
T Consensus 7 ~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~ 38 (169)
T cd02037 7 GKGGVGKSTVAVNLALALAKLGYKVGLLDADI 38 (169)
T ss_pred CCCcCChhHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 33566888899999999999999999996654
No 377
>PRK12829 short chain dehydrogenase; Provisional
Probab=29.34 E-value=1e+02 Score=23.50 Aligned_cols=34 Identities=18% Similarity=0.227 Sum_probs=24.1
Q ss_pred cceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCC
Q 039991 35 QLHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTP 72 (172)
Q Consensus 35 ~~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~ 72 (172)
..++++.. +.|.+ -..+++.|+++|++|+.+.-.
T Consensus 11 ~~~vlItG--a~g~i--G~~~a~~L~~~g~~V~~~~r~ 44 (264)
T PRK12829 11 GLRVLVTG--GASGI--GRAIAEAFAEAGARVHVCDVS 44 (264)
T ss_pred CCEEEEeC--CCCcH--HHHHHHHHHHCCCEEEEEeCC
Confidence 35666664 34555 477899999999998777643
No 378
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=29.28 E-value=1.4e+02 Score=23.68 Aligned_cols=36 Identities=11% Similarity=0.021 Sum_probs=28.5
Q ss_pred eEEEEcC-CCccchHHHHHHHHHHHHCCCEEEEEeCC
Q 039991 37 HVFFFPF-MAHGHMIPIVDMAKLFVTRGVKASVITTP 72 (172)
Q Consensus 37 ~Ilv~p~-p~~GH~~P~l~La~~La~rGh~Vt~it~~ 72 (172)
.|++... .|.|--.-...||..|+++|.+|..+=-.
T Consensus 3 ~iai~s~kGGvG~TTltAnLA~aL~~~G~~VlaID~d 39 (243)
T PF06564_consen 3 VIAIVSPKGGVGKTTLTANLAWALARLGESVLAIDLD 39 (243)
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 4554443 34599999999999999999999998765
No 379
>PRK06851 hypothetical protein; Provisional
Probab=29.22 E-value=1.3e+02 Score=25.27 Aligned_cols=40 Identities=8% Similarity=0.135 Sum_probs=33.8
Q ss_pred ceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCCh
Q 039991 36 LHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPANT 75 (172)
Q Consensus 36 ~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~ 75 (172)
.-+++-..||.|.-.-+..+++.+.++|.+|.++.++...
T Consensus 31 ~~~il~G~pGtGKStl~~~i~~~~~~~g~~Ve~~~~~~d~ 70 (367)
T PRK06851 31 RIFILKGGPGTGKSTLMKKIGEEFLEKGYDVEFLHCSSDN 70 (367)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEcCCCC
Confidence 3456777899999999999999999999999998776543
No 380
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=29.20 E-value=94 Score=24.79 Aligned_cols=25 Identities=40% Similarity=0.513 Sum_probs=17.4
Q ss_pred CCE-EEecCCCc-cHHHHHHHhCCCCC
Q 039991 148 PDC-LVADIFFP-WATDAAAKFGIPRL 172 (172)
Q Consensus 148 ~d~-VI~D~~~~-~a~~vA~~lgiP~v 172 (172)
||+ +|.|.-.= -|..=|.++|||+|
T Consensus 157 Pd~l~ViDp~~e~iAv~EA~klgIPVv 183 (252)
T COG0052 157 PDVLFVIDPRKEKIAVKEANKLGIPVV 183 (252)
T ss_pred CCEEEEeCCcHhHHHHHHHHHcCCCEE
Confidence 885 55665432 25677899999985
No 381
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=29.16 E-value=1.7e+02 Score=19.67 Aligned_cols=30 Identities=13% Similarity=0.197 Sum_probs=23.8
Q ss_pred ccchHHHHHHHHHHHHCCCEEEEEeCCCCh
Q 039991 46 HGHMIPIVDMAKLFVTRGVKASVITTPANT 75 (172)
Q Consensus 46 ~GH~~P~l~La~~La~rGh~Vt~it~~~~~ 75 (172)
.+.-.-+..+++.|+++|+.|..+..+...
T Consensus 9 ~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~ 38 (145)
T PF12695_consen 9 GGSRRDYQPLAEALAEQGYAVVAFDYPGHG 38 (145)
T ss_dssp TTTTHHHHHHHHHHHHTTEEEEEESCTTST
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEEecCCCC
Confidence 345667899999999999999998766543
No 382
>KOG2585 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.15 E-value=1.5e+02 Score=25.67 Aligned_cols=36 Identities=8% Similarity=-0.007 Sum_probs=28.0
Q ss_pred cceEEEEcCCCc--cchHHHHHHHHHHHHCCCEEEEEeCCC
Q 039991 35 QLHVFFFPFMAH--GHMIPIVDMAKLFVTRGVKASVITTPA 73 (172)
Q Consensus 35 ~~~Ilv~p~p~~--GH~~P~l~La~~La~rGh~Vt~it~~~ 73 (172)
.++|++++.|+- |.-. ..||.|+..||.++++.+..
T Consensus 266 ~P~V~Ilcgpgnnggdg~---v~gRHL~~~G~~~vi~~pk~ 303 (453)
T KOG2585|consen 266 WPLVAILCGPGNNGGDGL---VCGRHLAQHGYTPVIYYPKR 303 (453)
T ss_pred CceEEEEeCCCCccchhH---HHHHHHHHcCceeEEEeecC
Confidence 357999998876 3332 29999999999999888763
No 383
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=29.11 E-value=62 Score=30.66 Aligned_cols=31 Identities=32% Similarity=0.320 Sum_probs=22.9
Q ss_pred HHHHhhhCCCCEEEecCCCccHHHHHHHhCCCCC
Q 039991 139 LEQLLRDHKPDCLVADIFFPWATDAAAKFGIPRL 172 (172)
Q Consensus 139 l~~ll~~~~~d~VI~D~~~~~a~~vA~~lgiP~v 172 (172)
+++++++.+||++|...- ...+|+++|||.+
T Consensus 381 l~~~i~~~~pDLlig~~~---~~~~a~k~giP~~ 411 (917)
T PRK14477 381 LLRVMREKMPDLIVAGGK---TKFLALKTRTPFL 411 (917)
T ss_pred HHHHHHhcCCCEEEecCc---hhhHHHHcCCCeE
Confidence 344556669999998543 4679999999974
No 384
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=29.10 E-value=1.6e+02 Score=22.85 Aligned_cols=38 Identities=21% Similarity=0.251 Sum_probs=29.1
Q ss_pred eEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCChh
Q 039991 37 HVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPANTP 76 (172)
Q Consensus 37 ~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~ 76 (172)
+++++. +-.=+.|++.+++.+.+.+.+|+++......+
T Consensus 99 ~~llia--gG~GiaP~~~~l~~~~~~~~~v~l~~~~r~~~ 136 (248)
T cd06219 99 TVVFVG--GGVGIAPIYPIAKALKEAGNRVITIIGARTKD 136 (248)
T ss_pred eEEEEe--CcccHHHHHHHHHHHHHcCCeEEEEEEcCCHH
Confidence 555554 45558999999999999899999888765443
No 385
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=29.10 E-value=1.1e+02 Score=26.53 Aligned_cols=36 Identities=14% Similarity=0.259 Sum_probs=31.0
Q ss_pred cceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCCh
Q 039991 35 QLHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPANT 75 (172)
Q Consensus 35 ~~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~ 75 (172)
.++|+++.....| +..++.|.++|++|++.-.....
T Consensus 7 ~~kv~V~GLG~sG-----~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 7 GKKVLVLGLGKSG-----LAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred CCEEEEEeccccc-----HHHHHHHHHCCCeEEEEcCCCCc
Confidence 5789999888778 89999999999999999876554
No 386
>PRK07236 hypothetical protein; Provisional
Probab=29.03 E-value=1.4e+02 Score=24.71 Aligned_cols=33 Identities=12% Similarity=-0.030 Sum_probs=24.8
Q ss_pred cceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCC
Q 039991 35 QLHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTP 72 (172)
Q Consensus 35 ~~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~ 72 (172)
..+|+|+... .--+.+|..|+++|++|+++=-.
T Consensus 6 ~~~ViIVGaG-----~aGl~~A~~L~~~G~~v~v~E~~ 38 (386)
T PRK07236 6 GPRAVVIGGS-----LGGLFAALLLRRAGWDVDVFERS 38 (386)
T ss_pred CCeEEEECCC-----HHHHHHHHHHHhCCCCEEEEecC
Confidence 4678888533 34467888899999999998754
No 387
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=29.01 E-value=1.5e+02 Score=24.54 Aligned_cols=37 Identities=16% Similarity=0.309 Sum_probs=31.5
Q ss_pred ceEEE--EcCCCccchHHHHHHHHHHHHCCCEEEEEeCC
Q 039991 36 LHVFF--FPFMAHGHMIPIVDMAKLFVTRGVKASVITTP 72 (172)
Q Consensus 36 ~~Ilv--~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~ 72 (172)
+-|.+ +...|.|----...|++.|.++|++|.+++=.
T Consensus 50 pvIsVGNi~vGGtGKTP~v~~L~~~l~~~g~~~~ilsRG 88 (325)
T PRK00652 50 PVIVVGNITVGGTGKTPVVIALAEQLQARGLKPGVVSRG 88 (325)
T ss_pred CEEEEcCeeCCCCChHHHHHHHHHHHHHCCCeEEEECCC
Confidence 45666 77788899999999999999999999998844
No 388
>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]
Probab=28.86 E-value=2.5e+02 Score=22.37 Aligned_cols=60 Identities=15% Similarity=0.376 Sum_probs=42.3
Q ss_pred ecCchhhhhhhhcCCCCC--------------CCcceEEEEcCCCccchHHHHHHHHHHHHCC-CEEEEEeCCCChh
Q 039991 15 NNSSLSLYLIRKLNMGSE--------------IPQLHVFFFPFMAHGHMIPIVDMAKLFVTRG-VKASVITTPANTP 76 (172)
Q Consensus 15 ~~~~~~~~~~~~~~M~~~--------------~~~~~Ilv~p~p~~GH~~P~l~La~~La~rG-h~Vt~it~~~~~~ 76 (172)
+....|.++-.+|.-+.. ....+++++. +-.=+.||+.+.+.|..+| -+|+++....+.+
T Consensus 76 ~~G~~S~~Lh~~lk~Gd~l~v~~P~G~F~l~~~~~~~~llla--~G~GITP~lSml~~~~~~~~~~v~l~h~~R~~~ 150 (266)
T COG1018 76 DGGGGSNWLHDHLKVGDTLEVSAPAGDFVLDDLPERKLLLLA--GGIGITPFLSMLRTLLDRGPADVVLVHAARTPA 150 (266)
T ss_pred CCCcccHHHHhcCCCCCEEEEecCCCCccCCCCCCCcEEEEe--ccccHhHHHHHHHHHHHhCCCCEEEEEecCChh
Confidence 346777777777764332 1123566665 5566899999999999988 8899988776543
No 389
>CHL00181 cbbX CbbX; Provisional
Probab=28.83 E-value=1.4e+02 Score=24.01 Aligned_cols=42 Identities=26% Similarity=0.354 Sum_probs=33.1
Q ss_pred hhhhcCCCCCCCcceEEEEcCCCccchHHHHHHHHHHHHCCC
Q 039991 23 LIRKLNMGSEIPQLHVFFFPFMAHGHMIPIVDMAKLFVTRGV 64 (172)
Q Consensus 23 ~~~~~~M~~~~~~~~Ilv~p~p~~GH~~P~l~La~~La~rGh 64 (172)
.|+++.+....+..|+++...||.|--.-...+|+.+...|.
T Consensus 47 ~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~ 88 (287)
T CHL00181 47 LRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGY 88 (287)
T ss_pred HHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 445666665344568999999999999999999999987655
No 390
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=28.68 E-value=63 Score=25.50 Aligned_cols=35 Identities=11% Similarity=-0.063 Sum_probs=26.9
Q ss_pred ceEEEEcCCCccch-HHHHHHHHHHHHCCCEEEEEeCC
Q 039991 36 LHVFFFPFMAHGHM-IPIVDMAKLFVTRGVKASVITTP 72 (172)
Q Consensus 36 ~~Ilv~p~p~~GH~-~P~l~La~~La~rGh~Vt~it~~ 72 (172)
.+|++++.+|- = -=-+.+|+.|.++|++|+++...
T Consensus 61 ~~V~VlcG~GN--NGGDGlv~AR~L~~~G~~V~v~~~~ 96 (246)
T PLN03050 61 PRVLLVCGPGN--NGGDGLVAARHLAHFGYEVTVCYPK 96 (246)
T ss_pred CeEEEEECCCC--CchhHHHHHHHHHHCCCeEEEEEcC
Confidence 57888886654 2 13578899999999999999843
No 391
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=28.65 E-value=98 Score=23.40 Aligned_cols=26 Identities=8% Similarity=0.116 Sum_probs=15.6
Q ss_pred HhhhCCCCEEEec----CCCccHHHHHHHh
Q 039991 142 LLRDHKPDCLVAD----IFFPWATDAAAKF 167 (172)
Q Consensus 142 ll~~~~~d~VI~D----~~~~~a~~vA~~l 167 (172)
+++..+|||||.| .-...+..+.+++
T Consensus 42 ~~~~~~pDlvLlDl~~~l~~~~g~~~i~~i 71 (207)
T PRK15411 42 ACDSLRPSVVFINEDCFIHDASNSQRIKQI 71 (207)
T ss_pred HHhccCCCEEEEeCcccCCCCChHHHHHHH
Confidence 3445578999999 3333455555544
No 392
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=28.55 E-value=1.5e+02 Score=22.11 Aligned_cols=35 Identities=17% Similarity=0.060 Sum_probs=23.2
Q ss_pred ceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeC
Q 039991 36 LHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITT 71 (172)
Q Consensus 36 ~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~ 71 (172)
+-|++++ -..|--..+..+|++|+++|+.|.+.-.
T Consensus 15 ~~Vvv~~-d~~G~~~~~~~~ad~lA~~Gy~v~~pD~ 49 (218)
T PF01738_consen 15 PAVVVIH-DIFGLNPNIRDLADRLAEEGYVVLAPDL 49 (218)
T ss_dssp EEEEEE--BTTBS-HHHHHHHHHHHHTT-EEEEE-C
T ss_pred CEEEEEc-CCCCCchHHHHHHHHHHhcCCCEEeccc
Confidence 4455554 4558778888999999999977776543
No 393
>PRK09444 pntB pyridine nucleotide transhydrogenase; Provisional
Probab=28.49 E-value=1.1e+02 Score=26.58 Aligned_cols=37 Identities=19% Similarity=0.406 Sum_probs=29.9
Q ss_pred cceEEEEcCCCccch-----HHHHHHHHHHHHCCCEEEEEeCCC
Q 039991 35 QLHVFFFPFMAHGHM-----IPIVDMAKLFVTRGVKASVITTPA 73 (172)
Q Consensus 35 ~~~Ilv~p~p~~GH~-----~P~l~La~~La~rGh~Vt~it~~~ 73 (172)
..+|+++| |+|=- ....+|++.|.+||.+|.|..-|-
T Consensus 306 A~~ViIVP--GYGmAVAqAQh~v~el~~~L~~~Gv~V~faIHPV 347 (462)
T PRK09444 306 SHSVIITP--GYGMAVAQAQYPVAEITEKLRARGINVRFGIHPV 347 (462)
T ss_pred CCcEEEEC--ChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeccc
Confidence 35788887 66643 588999999999999999987663
No 394
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=28.49 E-value=1.7e+02 Score=19.60 Aligned_cols=31 Identities=19% Similarity=0.277 Sum_probs=25.5
Q ss_pred CccchHHHHHHHHHHHHCCCEEEEEeCCCCh
Q 039991 45 AHGHMIPIVDMAKLFVTRGVKASVITTPANT 75 (172)
Q Consensus 45 ~~GH~~P~l~La~~La~rGh~Vt~it~~~~~ 75 (172)
-.|.-.-+++.++.+.++|..|..+|.....
T Consensus 55 ~sG~t~e~~~~~~~a~~~g~~vi~iT~~~~s 85 (126)
T cd05008 55 QSGETADTLAALRLAKEKGAKTVAITNVVGS 85 (126)
T ss_pred CCcCCHHHHHHHHHHHHcCCeEEEEECCCCC
Confidence 3466667999999999999999999987553
No 395
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=28.46 E-value=2.2e+02 Score=20.27 Aligned_cols=45 Identities=9% Similarity=0.020 Sum_probs=36.6
Q ss_pred ceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCChhhhhh
Q 039991 36 LHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPANTPYVSK 80 (172)
Q Consensus 36 ~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~~~ 80 (172)
.+|++-..-+-+|-.=-.-++..|.+.|++|..+......+.+-.
T Consensus 2 ~~vvigtv~~D~HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~v~ 46 (134)
T TIGR01501 2 KTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNLGVLSPQEEFIK 46 (134)
T ss_pred CeEEEEEecCChhhHhHHHHHHHHHHCCCEEEECCCCCCHHHHHH
Confidence 467777777889999888889999999999999998866555433
No 396
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=28.43 E-value=1.6e+02 Score=22.12 Aligned_cols=38 Identities=8% Similarity=0.139 Sum_probs=29.5
Q ss_pred eEEEEc-CCCccchHHHHHHHHHHHH-CCCEEEEEeCCCC
Q 039991 37 HVFFFP-FMAHGHMIPIVDMAKLFVT-RGVKASVITTPAN 74 (172)
Q Consensus 37 ~Ilv~p-~p~~GH~~P~l~La~~La~-rGh~Vt~it~~~~ 74 (172)
.|++.. -+|.|--.-...||..|+. +|.+|.++-....
T Consensus 37 vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D~~ 76 (207)
T TIGR03018 37 LIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDADLR 76 (207)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEEECCCC
Confidence 344553 4566888999999999996 6999999877654
No 397
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=28.33 E-value=66 Score=23.24 Aligned_cols=32 Identities=16% Similarity=0.178 Sum_probs=22.2
Q ss_pred ceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCC
Q 039991 36 LHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTP 72 (172)
Q Consensus 36 ~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~ 72 (172)
++|.++.... --..+|+.|+++||+|+++...
T Consensus 2 ~~Ig~IGlG~-----mG~~~a~~L~~~g~~v~~~d~~ 33 (163)
T PF03446_consen 2 MKIGFIGLGN-----MGSAMARNLAKAGYEVTVYDRS 33 (163)
T ss_dssp BEEEEE--SH-----HHHHHHHHHHHTTTEEEEEESS
T ss_pred CEEEEEchHH-----HHHHHHHHHHhcCCeEEeeccc
Confidence 4666665433 3357899999999999988633
No 398
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=28.24 E-value=1.5e+02 Score=23.37 Aligned_cols=36 Identities=17% Similarity=0.260 Sum_probs=29.1
Q ss_pred eEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCC
Q 039991 37 HVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTP 72 (172)
Q Consensus 37 ~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~ 72 (172)
.|+++.=.|.|--.-...||..|+++|.+|-++=.+
T Consensus 3 ~i~~~gKGGVGKTT~a~nLA~~La~~G~rVLliD~D 38 (279)
T PRK13230 3 KFCFYGKGGIGKSTTVCNIAAALAESGKKVLVVGCD 38 (279)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhCCCEEEEEeeC
Confidence 466665556688899999999999999999888444
No 399
>PLN02427 UDP-apiose/xylose synthase
Probab=28.23 E-value=1.4e+02 Score=24.71 Aligned_cols=42 Identities=14% Similarity=0.265 Sum_probs=27.4
Q ss_pred hcCCCCC-CCcceEEEEcCCCccchHHHHHHHHHHHHC-CCEEEEEeC
Q 039991 26 KLNMGSE-IPQLHVFFFPFMAHGHMIPIVDMAKLFVTR-GVKASVITT 71 (172)
Q Consensus 26 ~~~M~~~-~~~~~Ilv~p~p~~GH~~P~l~La~~La~r-Gh~Vt~it~ 71 (172)
.||.+.+ .++++|+|... -|.+ -..|+++|+++ |++|+.+.-
T Consensus 4 ~~~~~~~~~~~~~VlVTGg--tGfI--Gs~lv~~L~~~~g~~V~~l~r 47 (386)
T PLN02427 4 RLDLDGKPIKPLTICMIGA--GGFI--GSHLCEKLMTETPHKVLALDV 47 (386)
T ss_pred hhcCCCCcccCcEEEEECC--cchH--HHHHHHHHHhcCCCEEEEEec
Confidence 3566544 33568888764 3443 24578889998 699988763
No 400
>PF01316 Arg_repressor: Arginine repressor, DNA binding domain; InterPro: IPR020900 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0006525 arginine metabolic process; PDB: 1AOY_A 3V4G_A 3LAJ_D 3FHZ_A 3LAP_B 3ERE_D 2P5L_C 1F9N_D 2P5K_A 1B4A_A ....
Probab=28.23 E-value=35 Score=21.55 Aligned_cols=20 Identities=15% Similarity=0.326 Sum_probs=13.4
Q ss_pred HHHHHHHHHHCCCEEEEEeC
Q 039991 52 IVDMAKLFVTRGVKASVITT 71 (172)
Q Consensus 52 ~l~La~~La~rGh~Vt~it~ 71 (172)
=-+|...|..+|+.||=.|.
T Consensus 22 Q~eL~~~L~~~Gi~vTQaTi 41 (70)
T PF01316_consen 22 QEELVELLEEEGIEVTQATI 41 (70)
T ss_dssp HHHHHHHHHHTT-T--HHHH
T ss_pred HHHHHHHHHHcCCCcchhHH
Confidence 45789999999999876553
No 401
>PRK10219 DNA-binding transcriptional regulator SoxS; Provisional
Probab=28.09 E-value=17 Score=24.34 Aligned_cols=22 Identities=9% Similarity=0.300 Sum_probs=19.3
Q ss_pred eeeeeecCchhhhhhhhcCCCC
Q 039991 10 KVAFTNNSSLSLYLIRKLNMGS 31 (172)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~M~~ 31 (172)
.+.|.|.|.|++.||+...|..
T Consensus 79 ~~Gf~~~s~f~~~Fk~~~G~tP 100 (107)
T PRK10219 79 DLGYVSQQTFSRVFRRQFDRTP 100 (107)
T ss_pred HHCCCCHHHHHHHHHHHHCcCH
Confidence 5679999999999999999873
No 402
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=28.03 E-value=90 Score=26.55 Aligned_cols=42 Identities=12% Similarity=0.140 Sum_probs=30.8
Q ss_pred ceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCChhhh
Q 039991 36 LHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPANTPYV 78 (172)
Q Consensus 36 ~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~ 78 (172)
.+|++.-. |.+...=...|.++|.+.|++|.++.++.....+
T Consensus 7 k~IllgvT-Gsiaa~k~~~lv~~L~~~g~~V~vv~T~~A~~fi 48 (399)
T PRK05579 7 KRIVLGVS-GGIAAYKALELVRRLRKAGADVRVVMTEAAKKFV 48 (399)
T ss_pred CeEEEEEe-CHHHHHHHHHHHHHHHhCCCEEEEEECHhHHHHH
Confidence 45655443 4445667899999999999999999988654433
No 403
>PF08384 NPP: Pro-opiomelanocortin, N-terminal region; InterPro: IPR013593 This domain represents the N-terminal peptide of pro-opiomelanocortin (NPP). It is thought to represent an important pituitary peptide, given its high yield from pituitary glands, and exhibits a potent in vitro aldosterone-stimulating activity [].
Probab=27.92 E-value=17 Score=20.93 Aligned_cols=10 Identities=40% Similarity=1.006 Sum_probs=7.8
Q ss_pred CCCccchHHH
Q 039991 43 FMAHGHMIPI 52 (172)
Q Consensus 43 ~p~~GH~~P~ 52 (172)
+||-||+.|.
T Consensus 35 ~PGn~hlQP~ 44 (45)
T PF08384_consen 35 FPGNGHLQPL 44 (45)
T ss_pred cCCCcccCCC
Confidence 4799999874
No 404
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=27.87 E-value=92 Score=24.55 Aligned_cols=34 Identities=18% Similarity=0.168 Sum_probs=25.5
Q ss_pred HHHHHhhhCCCCEEEecCCCcc--HHHHHHHhCCCC
Q 039991 138 PLEQLLRDHKPDCLVADIFFPW--ATDAAAKFGIPR 171 (172)
Q Consensus 138 ~l~~ll~~~~~d~VI~D~~~~~--a~~vA~~lgiP~ 171 (172)
.+.+.+++.+..||+++..... +-.+|++.|+|.
T Consensus 208 ~l~~~ik~~~v~~if~e~~~~~~~~~~la~~~g~~v 243 (266)
T cd01018 208 RLIDLAKEKGVRVVFVQPQFSTKSAEAIAREIGAKV 243 (266)
T ss_pred HHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHcCCeE
Confidence 3345566778999999987655 348999999875
No 405
>PF04493 Endonuclease_5: Endonuclease V; InterPro: IPR007581 Endonuclease V is specific for single-stranded DNA, for duplex DNA that contains uracil, or that is damaged []. Matrix metalloproteinase-1 (MMP-1) is the major enzyme responsible for collagen 1 digestion. It is induced by exposure to sunlight, but is reduced with treatment of DNA repair enzyme endonuclease V []. This family consequently has potential medical importance []. This endonuclease also appears in bifunctional enzymes, such as the bifunctional methyltransferase/endonuclease in Thermoplasma acidophilum.; GO: 0004519 endonuclease activity, 0006281 DNA repair; PDB: 3GA2_A 2W36_A 3HD0_A 2W35_B 3GOC_B.
Probab=27.79 E-value=70 Score=24.65 Aligned_cols=35 Identities=23% Similarity=0.288 Sum_probs=18.8
Q ss_pred HHHHHhhhC--CCCEEEecCCCcc-------HHHHHHHhCCCCC
Q 039991 138 PLEQLLRDH--KPDCLVADIFFPW-------ATDAAAKFGIPRL 172 (172)
Q Consensus 138 ~l~~ll~~~--~~d~VI~D~~~~~-------a~~vA~~lgiP~v 172 (172)
.+.+++++. ++|+|++|-.... |..++-.+++|+|
T Consensus 78 ~~l~~l~~l~~~~dvilvDG~G~~HpR~~GlA~HlGv~l~iPtI 121 (206)
T PF04493_consen 78 CILEALEKLKNKPDVILVDGHGILHPRRFGLASHLGVLLDIPTI 121 (206)
T ss_dssp HHHHHHHTSSS--SCEEEES-SSSSTTS--HHHHHHHHHTS-EE
T ss_pred HHHHHHHHhcccCCEEEEeCceeecCCCcChhheeeeccCCCEE
Confidence 333444443 6899999975433 3466666778864
No 406
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=27.78 E-value=80 Score=26.76 Aligned_cols=43 Identities=16% Similarity=0.257 Sum_probs=31.2
Q ss_pred ceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCChhhhh
Q 039991 36 LHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPANTPYVS 79 (172)
Q Consensus 36 ~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~~ 79 (172)
.+|++.- .|.+...-...+.+.|.+.|++|.++.++.....+.
T Consensus 4 k~Illgi-TGSiaa~~~~~ll~~L~~~g~~V~vv~T~~A~~fv~ 46 (390)
T TIGR00521 4 KKILLGV-TGGIAAYKTVELVRELVRQGAEVKVIMTEAAKKFIT 46 (390)
T ss_pred CEEEEEE-eCHHHHHHHHHHHHHHHhCCCEEEEEECHhHHHHHH
Confidence 3555443 355556778999999999999999999886544443
No 407
>PRK11524 putative methyltransferase; Provisional
Probab=27.75 E-value=68 Score=25.64 Aligned_cols=35 Identities=20% Similarity=0.146 Sum_probs=23.9
Q ss_pred HHHHHHhhhC-CCCEEEecCCCccH--HHHHHHhCCCC
Q 039991 137 EPLEQLLRDH-KPDCLVADIFFPWA--TDAAAKFGIPR 171 (172)
Q Consensus 137 ~~l~~ll~~~-~~d~VI~D~~~~~a--~~vA~~lgiP~ 171 (172)
+.++.+++.. ++.=+|.|+|++.| ..+|+++|--+
T Consensus 196 ~L~erlI~~~S~~GD~VLDPF~GSGTT~~AA~~lgR~~ 233 (284)
T PRK11524 196 ALLKRIILASSNPGDIVLDPFAGSFTTGAVAKASGRKF 233 (284)
T ss_pred HHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHcCCCE
Confidence 4455666554 55558999999886 47788887543
No 408
>COG2210 Peroxiredoxin family protein [General function prediction only]
Probab=27.71 E-value=1.5e+02 Score=21.34 Aligned_cols=28 Identities=14% Similarity=-0.024 Sum_probs=24.8
Q ss_pred ccchHHHHHHHHHHHHCCCEEEEEeCCC
Q 039991 46 HGHMIPIVDMAKLFVTRGVKASVITTPA 73 (172)
Q Consensus 46 ~GH~~P~l~La~~La~rGh~Vt~it~~~ 73 (172)
.--+.|..-++...+++|++|++..+..
T Consensus 14 ~dk~~~a~iias~A~A~G~EV~VF~Tfw 41 (137)
T COG2210 14 LDKAYAALIIASGAAAMGYEVTVFFTFW 41 (137)
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEEEeHH
Confidence 3778899999999999999999999863
No 409
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=27.67 E-value=1.7e+02 Score=24.35 Aligned_cols=27 Identities=15% Similarity=0.025 Sum_probs=16.6
Q ss_pred CCCCEEEe-cC--CCccHHHHHHHh--CCCCC
Q 039991 146 HKPDCLVA-DI--FFPWATDAAAKF--GIPRL 172 (172)
Q Consensus 146 ~~~d~VI~-D~--~~~~a~~vA~~l--giP~v 172 (172)
.+||++|. |+ |....+.-+++. |||++
T Consensus 75 ~~pd~~i~iD~p~Fnl~lak~~k~~~~~i~vi 106 (347)
T PRK14089 75 KQADKVLLMDSSSFNIPLAKKIKKAYPKKEII 106 (347)
T ss_pred cCCCEEEEeCCCCCCHHHHHHHHhcCCCCCEE
Confidence 48996665 75 333345566667 68864
No 410
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=27.65 E-value=1.7e+02 Score=25.02 Aligned_cols=39 Identities=15% Similarity=0.094 Sum_probs=33.5
Q ss_pred ceEEEEcCCCccchHHHHHHHHHHH--HCCCEEEEEeCCCC
Q 039991 36 LHVFFFPFMAHGHMIPIVDMAKLFV--TRGVKASVITTPAN 74 (172)
Q Consensus 36 ~~Ilv~p~p~~GH~~P~l~La~~La--~rGh~Vt~it~~~~ 74 (172)
..++++..+|.|--.-...||..++ ..|++|.+++.+.+
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~ 262 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTY 262 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCcc
Confidence 4567777788899999999999998 56899999999875
No 411
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=27.61 E-value=1e+02 Score=26.92 Aligned_cols=43 Identities=16% Similarity=0.179 Sum_probs=31.0
Q ss_pred ceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCChhhhh
Q 039991 36 LHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPANTPYVS 79 (172)
Q Consensus 36 ~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~~ 79 (172)
.+|++.-..+. -..-...|+++|.++|++|.++.++.....+.
T Consensus 71 k~IllgVtGsI-Aayka~~lvr~L~k~G~~V~VvmT~sA~~fv~ 113 (475)
T PRK13982 71 KRVTLIIGGGI-AAYKALDLIRRLKERGAHVRCVLTKAAQQFVT 113 (475)
T ss_pred CEEEEEEccHH-HHHHHHHHHHHHHhCcCEEEEEECcCHHHHhh
Confidence 45665543333 34588999999999999999999986544433
No 412
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=27.60 E-value=2e+02 Score=23.10 Aligned_cols=43 Identities=9% Similarity=0.099 Sum_probs=37.0
Q ss_pred ceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCChhhh
Q 039991 36 LHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPANTPYV 78 (172)
Q Consensus 36 ~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~ 78 (172)
.+|+++.=.|.|--.-.-.++.+|+..|++|-.+..++.++..
T Consensus 2 r~iAiYGKGGIGKSTts~N~aAAla~~GkkVl~vGCDPKaDST 44 (278)
T COG1348 2 RQIAIYGKGGIGKSTTSQNLAAALAELGKKVLIVGCDPKADST 44 (278)
T ss_pred ceEEEecCCCcCcchhHHHHHHHHHHcCCeEEEEcCCCCcchH
Confidence 4678888888899999999999999999999999988765543
No 413
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=27.52 E-value=1.6e+02 Score=19.77 Aligned_cols=31 Identities=32% Similarity=0.357 Sum_probs=25.2
Q ss_pred CCccchHHHHHHHHHHHHCCCEEEEEeCCCC
Q 039991 44 MAHGHMIPIVDMAKLFVTRGVKASVITTPAN 74 (172)
Q Consensus 44 p~~GH~~P~l~La~~La~rGh~Vt~it~~~~ 74 (172)
...|+--.++.+++.+.++|..+..+|....
T Consensus 68 S~~g~~~~~~~~~~~a~~~g~~iv~iT~~~~ 98 (139)
T cd05013 68 SFSGETKETVEAAEIAKERGAKVIAITDSAN 98 (139)
T ss_pred eCCCCCHHHHHHHHHHHHcCCeEEEEcCCCC
Confidence 3456667789999999999999999998754
No 414
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=27.51 E-value=73 Score=24.46 Aligned_cols=28 Identities=29% Similarity=0.230 Sum_probs=15.1
Q ss_pred hCCCCEEEecCCCcc--HH-HHHHHhCCCCC
Q 039991 145 DHKPDCLVADIFFPW--AT-DAAAKFGIPRL 172 (172)
Q Consensus 145 ~~~~d~VI~D~~~~~--a~-~vA~~lgiP~v 172 (172)
+.+||+||....... .. .+.+..|+|++
T Consensus 72 ~l~PDLIi~~~~~~~~~~~~~l~~~~gipvv 102 (262)
T cd01147 72 ALKPDVVIDVGSDDPTSIADDLQKKTGIPVV 102 (262)
T ss_pred hcCCCEEEEecCCccchhHHHHHHhhCCCEE
Confidence 347888877654332 12 23344677753
No 415
>TIGR03172 probable selenium-dependent hydroxylase accessory protein YqeC. This uncharacterized protein family includes YqeC from Escherichia coli. A phylogenetic profiling analysis shows correlation with SelD, the selenium donor protein, even in species where SelD contributes to neither selenocysteine nor selenouridine biosynthesis. Instead, this family, and families TIGR03309 and TIGR03310 appear to mark selenium-dependent molybdenum hydroxylase maturation systems.
Probab=27.37 E-value=1.4e+02 Score=23.44 Aligned_cols=29 Identities=21% Similarity=0.207 Sum_probs=25.4
Q ss_pred ccchHHHHHHHHHHHHCCCEEEEEeCCCC
Q 039991 46 HGHMIPIVDMAKLFVTRGVKASVITTPAN 74 (172)
Q Consensus 46 ~GH~~P~l~La~~La~rGh~Vt~it~~~~ 74 (172)
.|--.-+..|+++|.++|.+|.+-|+...
T Consensus 8 gGKTtl~~~l~~~~~~~g~~v~~TTTT~m 36 (232)
T TIGR03172 8 GGKTSTMFWLAAEYRKEGYRVLVTTTTRM 36 (232)
T ss_pred CcHHHHHHHHHHHHHHCCCeEEEECCccc
Confidence 57788899999999999999999888643
No 416
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=27.15 E-value=73 Score=24.04 Aligned_cols=33 Identities=15% Similarity=0.147 Sum_probs=22.6
Q ss_pred ceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCC
Q 039991 36 LHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTP 72 (172)
Q Consensus 36 ~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~ 72 (172)
..+++.. +.|.+ -.++++.|+++|++|+.+.-.
T Consensus 6 ~~vlItG--asg~i--G~~l~~~l~~~G~~V~~~~r~ 38 (251)
T PRK07231 6 KVAIVTG--ASSGI--GEGIARRFAAEGARVVVTDRN 38 (251)
T ss_pred cEEEEEC--CCChH--HHHHHHHHHHCCCEEEEEeCC
Confidence 3555554 33433 368999999999998887654
No 417
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=27.12 E-value=1.8e+02 Score=19.90 Aligned_cols=37 Identities=8% Similarity=0.128 Sum_probs=28.4
Q ss_pred ceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCC
Q 039991 36 LHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTP 72 (172)
Q Consensus 36 ~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~ 72 (172)
.+|++++..|.|--.-.-..-+...++|.++++-.-.
T Consensus 2 k~IlLvC~aGmSTSlLV~Km~~aA~~kg~~~~I~A~s 38 (102)
T COG1440 2 KKILLVCAAGMSTSLLVTKMKKAAESKGKDVTIEAYS 38 (102)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHhCCCceEEEEec
Confidence 5789999888887766666666677789888887655
No 418
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=27.08 E-value=1.6e+02 Score=22.36 Aligned_cols=30 Identities=10% Similarity=0.117 Sum_probs=25.1
Q ss_pred CCccchHHHHHHHHHHHHCCCEEEEEeCCC
Q 039991 44 MAHGHMIPIVDMAKLFVTRGVKASVITTPA 73 (172)
Q Consensus 44 p~~GH~~P~l~La~~La~rGh~Vt~it~~~ 73 (172)
.|.|=-.-...||..|+++|++|.++=...
T Consensus 10 GGvGKTt~a~~LA~~la~~g~~VlliD~D~ 39 (251)
T TIGR01969 10 GGTGKTTITANLGVALAKLGKKVLALDADI 39 (251)
T ss_pred CCCcHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 345778888999999999999999987654
No 419
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=27.04 E-value=1.6e+02 Score=22.80 Aligned_cols=39 Identities=15% Similarity=0.257 Sum_probs=29.7
Q ss_pred ceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCChh
Q 039991 36 LHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPANTP 76 (172)
Q Consensus 36 ~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~ 76 (172)
.+++++. +-.=+.|++.+++.+.++|.+|+++....+..
T Consensus 103 ~~~vlIa--gG~GiaP~~s~l~~~~~~~~~v~l~~~~r~~~ 141 (250)
T PRK00054 103 GKVLLVG--GGIGVAPLYELAKELKKKGVEVTTVLGARTKD 141 (250)
T ss_pred CeEEEEe--ccccHHHHHHHHHHHHHcCCcEEEEEEcCCHH
Confidence 4566665 45557899999999999999999887765433
No 420
>PRK11914 diacylglycerol kinase; Reviewed
Probab=26.99 E-value=1.8e+02 Score=23.26 Aligned_cols=37 Identities=22% Similarity=0.231 Sum_probs=24.3
Q ss_pred eEEEEcCCCccch-HHHHHHHHHHHHCCCEEEEEeCCC
Q 039991 37 HVFFFPFMAHGHM-IPIVDMAKLFVTRGVKASVITTPA 73 (172)
Q Consensus 37 ~Ilv~p~p~~GH~-~P~l~La~~La~rGh~Vt~it~~~ 73 (172)
-+++-|..+.|.. .-.-++.+.|.++|++++++.+..
T Consensus 12 ~iI~NP~sG~g~~~~~~~~~~~~l~~~g~~~~~~~t~~ 49 (306)
T PRK11914 12 TVLTNPLSGHGAAPHAAERAIARLHHRGVDVVEIVGTD 49 (306)
T ss_pred EEEECCCCCCCcHHHHHHHHHHHHHHcCCeEEEEEeCC
Confidence 3444454455553 345578888999999988766654
No 421
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=26.93 E-value=71 Score=26.99 Aligned_cols=28 Identities=25% Similarity=0.479 Sum_probs=21.8
Q ss_pred cchHHHH---HHHHHHHHCCCEEEEEeCCCC
Q 039991 47 GHMIPIV---DMAKLFVTRGVKASVITTPAN 74 (172)
Q Consensus 47 GH~~P~l---~La~~La~rGh~Vt~it~~~~ 74 (172)
||+.|++ .+++.+..+|++|.+++..+.
T Consensus 17 GH~~~~l~ADv~aR~~r~~G~~v~~~tGtDe 47 (391)
T PF09334_consen 17 GHLYPYLAADVLARYLRLRGHDVLFVTGTDE 47 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-EEEEEEEEE-
T ss_pred ChhHHHHHHHHHHHHHhhcccceeeEEecch
Confidence 9998766 578888889999999998754
No 422
>PRK13236 nitrogenase reductase; Reviewed
Probab=26.92 E-value=1.8e+02 Score=23.31 Aligned_cols=36 Identities=8% Similarity=0.119 Sum_probs=28.5
Q ss_pred EEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCC
Q 039991 38 VFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPA 73 (172)
Q Consensus 38 Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~ 73 (172)
|.|..=.|.|--+....||..|+++|.+|-++-...
T Consensus 9 ~~~~GKGGVGKTt~a~NLA~~La~~G~rVLliD~D~ 44 (296)
T PRK13236 9 IAFYGKGGIGKSTTSQNTLAAMAEMGQRILIVGCDP 44 (296)
T ss_pred EEEECCCcCCHHHHHHHHHHHHHHCCCcEEEEEccC
Confidence 335554556888999999999999999999996553
No 423
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=26.87 E-value=89 Score=25.34 Aligned_cols=33 Identities=21% Similarity=0.248 Sum_probs=25.2
Q ss_pred cceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCC
Q 039991 35 QLHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTP 72 (172)
Q Consensus 35 ~~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~ 72 (172)
.++|.++.....| ..+|..|+++||+|+++...
T Consensus 4 ~m~I~iIG~G~mG-----~~ia~~L~~~G~~V~~~~r~ 36 (328)
T PRK14618 4 GMRVAVLGAGAWG-----TALAVLAASKGVPVRLWARR 36 (328)
T ss_pred CCeEEEECcCHHH-----HHHHHHHHHCCCeEEEEeCC
Confidence 4578888654444 45788899999999999874
No 424
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=26.87 E-value=45 Score=28.91 Aligned_cols=31 Identities=26% Similarity=0.408 Sum_probs=23.6
Q ss_pred HHHHHhhhCCCCEEEecCCCccHHHHHHHhCCCC
Q 039991 138 PLEQLLRDHKPDCLVADIFFPWATDAAAKFGIPR 171 (172)
Q Consensus 138 ~l~~ll~~~~~d~VI~D~~~~~a~~vA~~lgiP~ 171 (172)
.+++++++.+||++|.... ...+|+++|||+
T Consensus 395 el~~~i~~~~pDl~ig~~~---~~~~a~k~gIP~ 425 (466)
T TIGR01282 395 EFEEFVEKLKPDLVGSGIK---EKYVFQKMGVPF 425 (466)
T ss_pred HHHHHHHHhCCCEEEecCC---ccceeeecCCCc
Confidence 4455666678999998865 367899999996
No 425
>PLN02293 adenine phosphoribosyltransferase
Probab=26.87 E-value=1.7e+02 Score=21.96 Aligned_cols=39 Identities=13% Similarity=0.075 Sum_probs=24.3
Q ss_pred HhHHHHHHHhhhCCCCEEEecCC--CccHHHHHHHhCCCCC
Q 039991 134 KLQEPLEQLLRDHKPDCLVADIF--FPWATDAAAKFGIPRL 172 (172)
Q Consensus 134 ~~~~~l~~ll~~~~~d~VI~D~~--~~~a~~vA~~lgiP~v 172 (172)
.+.+.+.+.+++.++|+|+.=.. ..+|..+|..+|+|++
T Consensus 49 ~~~~~l~~~~~~~~~d~Ivg~e~~Gi~lA~~lA~~Lg~p~v 89 (187)
T PLN02293 49 DTIDLFVERYRDMGISVVAGIEARGFIFGPPIALAIGAKFV 89 (187)
T ss_pred HHHHHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHCCCEE
Confidence 33444444445557888775322 2346799999999863
No 426
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=26.84 E-value=94 Score=25.33 Aligned_cols=35 Identities=17% Similarity=0.248 Sum_probs=27.3
Q ss_pred cceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCC
Q 039991 35 QLHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPAN 74 (172)
Q Consensus 35 ~~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~ 74 (172)
+.+|+|+.....| +..|..|+++|++|+++-...-
T Consensus 4 ~~~vvVIGgGi~G-----ls~A~~La~~G~~V~vie~~~~ 38 (387)
T COG0665 4 KMDVVIIGGGIVG-----LSAAYYLAERGADVTVLEAGEA 38 (387)
T ss_pred cceEEEECCcHHH-----HHHHHHHHHcCCEEEEEecCcc
Confidence 4678888644335 8889999999999999986643
No 427
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=26.83 E-value=73 Score=27.14 Aligned_cols=31 Identities=19% Similarity=0.370 Sum_probs=21.4
Q ss_pred EEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCC
Q 039991 38 VFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTP 72 (172)
Q Consensus 38 Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~ 72 (172)
|.|+...+.| |-.+|+.|+++|++|+..=..
T Consensus 2 ~~~iGiggsG----m~~la~~L~~~G~~v~~~D~~ 32 (448)
T TIGR01082 2 IHFVGIGGIG----MSGIAEILLNRGYQVSGSDIA 32 (448)
T ss_pred EEEEEECHHH----HHHHHHHHHHCCCeEEEECCC
Confidence 4444444433 556999999999999876543
No 428
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=26.82 E-value=1.5e+02 Score=25.20 Aligned_cols=38 Identities=11% Similarity=0.193 Sum_probs=29.8
Q ss_pred eEEEEcC-CCccchHHHHHHHHHHHHCCCEEEEEeCCCC
Q 039991 37 HVFFFPF-MAHGHMIPIVDMAKLFVTRGVKASVITTPAN 74 (172)
Q Consensus 37 ~Ilv~p~-p~~GH~~P~l~La~~La~rGh~Vt~it~~~~ 74 (172)
.|.+... .|.|--...+.||..|+.+|++|.++=.+..
T Consensus 123 vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlIDlDpQ 161 (405)
T PRK13869 123 VIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLDPQ 161 (405)
T ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEEcCCCC
Confidence 4455544 4559999999999999999999999876543
No 429
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=26.81 E-value=1.1e+02 Score=21.54 Aligned_cols=25 Identities=4% Similarity=0.215 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHCCCEEEEEeCCCCh
Q 039991 51 PIVDMAKLFVTRGVKASVITTPANT 75 (172)
Q Consensus 51 P~l~La~~La~rGh~Vt~it~~~~~ 75 (172)
...+..++|.++||.|+++|.....
T Consensus 28 ~~ie~L~~l~~~G~~IiiaTGR~~~ 52 (126)
T TIGR01689 28 AVIEKLRHYKALGFEIVISSSRNMR 52 (126)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCch
Confidence 5666777778999999999998654
No 430
>PRK10490 sensor protein KdpD; Provisional
Probab=26.74 E-value=1.2e+02 Score=28.71 Aligned_cols=42 Identities=17% Similarity=0.252 Sum_probs=36.1
Q ss_pred CCcceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCC
Q 039991 33 IPQLHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPAN 74 (172)
Q Consensus 33 ~~~~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~ 74 (172)
.++.+|.+=..||.|--.-|+.-|++|.++|++|.+-..+..
T Consensus 22 ~g~l~i~~g~~~gvgkt~~ml~~a~~~~~~g~dvv~g~~e~h 63 (895)
T PRK10490 22 RGKLKIFFGACAGVGKTYAMLQEAQRLRAQGLDVLVGVVETH 63 (895)
T ss_pred CCcEEEEeecCCCCCHHHHHHHHHHHHHhCCCcEEEEEeeCC
Confidence 346789999999999999999999999999999987655543
No 431
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=26.69 E-value=1e+02 Score=24.95 Aligned_cols=28 Identities=11% Similarity=0.108 Sum_probs=24.4
Q ss_pred chHHHHHHHHHHHHCCCEEEEEeCCCCh
Q 039991 48 HMIPIVDMAKLFVTRGVKASVITTPANT 75 (172)
Q Consensus 48 H~~P~l~La~~La~rGh~Vt~it~~~~~ 75 (172)
.+-+++.|.+.|.++|+.|.++|.....
T Consensus 146 Alp~al~ly~~l~~~G~kIf~VSgR~e~ 173 (275)
T TIGR01680 146 ALPETLKNYNKLVSLGFKIIFLSGRLKD 173 (275)
T ss_pred CChHHHHHHHHHHHCCCEEEEEeCCchh
Confidence 3459999999999999999999998653
No 432
>PRK15043 transcriptional regulator MirA; Provisional
Probab=26.59 E-value=1.2e+02 Score=24.07 Aligned_cols=39 Identities=10% Similarity=0.094 Sum_probs=28.1
Q ss_pred cceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCC
Q 039991 35 QLHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPAN 74 (172)
Q Consensus 35 ~~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~ 74 (172)
..+++++.+++.. =.-..--|..|.+.|++|+++..+-.
T Consensus 162 ~~~~Ll~~~~~~~-~~~lwl~a~~l~~~g~~v~vl~~~~~ 200 (243)
T PRK15043 162 GKDALVVGWNIHD-TTRLWLEGWIASQQGWRIDVLAHSLN 200 (243)
T ss_pred CCCEEEEeCCCCC-cHHHHHHHHHHhcCCceEEEeCCccc
Confidence 4579999988777 33344445566778999999987743
No 433
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=26.59 E-value=72 Score=25.27 Aligned_cols=21 Identities=14% Similarity=0.306 Sum_probs=17.4
Q ss_pred HHHHHHHHHCCCEEEEEeCCC
Q 039991 53 VDMAKLFVTRGVKASVITTPA 73 (172)
Q Consensus 53 l~La~~La~rGh~Vt~it~~~ 73 (172)
+.+|..|+++|++|+++=-..
T Consensus 14 l~~A~~L~~~G~~v~i~E~~~ 34 (356)
T PF01494_consen 14 LAAALALARAGIDVTIIERRP 34 (356)
T ss_dssp HHHHHHHHHTTCEEEEEESSS
T ss_pred HHHHHHHHhcccccccchhcc
Confidence 567888999999999987543
No 434
>COG1432 Uncharacterized conserved protein [Function unknown]
Probab=26.51 E-value=1.7e+02 Score=21.82 Aligned_cols=33 Identities=18% Similarity=0.398 Sum_probs=27.8
Q ss_pred ceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCC
Q 039991 36 LHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPA 73 (172)
Q Consensus 36 ~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~ 73 (172)
-+++++. +-|.+.|. .+.+.++|-+|+++....
T Consensus 112 D~ivl~S--gD~DF~p~---v~~~~~~G~rv~v~~~~~ 144 (181)
T COG1432 112 DTIVLFS--GDGDFIPL---VEAARDKGKRVEVAGIEP 144 (181)
T ss_pred CEEEEEc--CCccHHHH---HHHHHHcCCEEEEEecCC
Confidence 4777776 78999988 777889999999999886
No 435
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=26.50 E-value=72 Score=27.13 Aligned_cols=21 Identities=19% Similarity=0.395 Sum_probs=18.1
Q ss_pred HHHHHHHHHHCCCEEEEEeCC
Q 039991 52 IVDMAKLFVTRGVKASVITTP 72 (172)
Q Consensus 52 ~l~La~~La~rGh~Vt~it~~ 72 (172)
-..+|++|+.+|++|+++..+
T Consensus 217 G~aiA~~l~~~Ga~V~~v~~~ 237 (399)
T PRK05579 217 GYALARAAARRGADVTLVSGP 237 (399)
T ss_pred HHHHHHHHHHCCCEEEEeCCC
Confidence 467899999999999998754
No 436
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=26.30 E-value=2.1e+02 Score=21.88 Aligned_cols=39 Identities=18% Similarity=0.295 Sum_probs=29.8
Q ss_pred ceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCChh
Q 039991 36 LHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPANTP 76 (172)
Q Consensus 36 ~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~ 76 (172)
.+++++. +-.=+.|++.+++.+.+.+.+|+++-.....+
T Consensus 98 ~~~llia--gGtGiap~~~~l~~~~~~~~~v~l~~~~r~~~ 136 (243)
T cd06192 98 GTVLLVA--GGIGLAPLLPIAKKLAANGNKVTVLAGAKKAK 136 (243)
T ss_pred CEEEEEe--CcccHHHHHHHHHHHHHCCCeEEEEEecCcHH
Confidence 3566664 44457899999999999899999888775543
No 437
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=26.06 E-value=69 Score=24.92 Aligned_cols=33 Identities=24% Similarity=0.441 Sum_probs=22.4
Q ss_pred HHHHhhhCCCCEEEecCCCcc--HHHHHHHhCCCC
Q 039991 139 LEQLLRDHKPDCLVADIFFPW--ATDAAAKFGIPR 171 (172)
Q Consensus 139 l~~ll~~~~~d~VI~D~~~~~--a~~vA~~lgiP~ 171 (172)
+.+.+++.+..||+++..... +..+|++.|+|.
T Consensus 191 l~~~ik~~~v~~i~~e~~~~~~~~~~la~~~g~~v 225 (256)
T PF01297_consen 191 LIKLIKENKVKCIFTEPQFSSKLAEALAKETGVKV 225 (256)
T ss_dssp HHHHHHHTT-SEEEEETTS-THHHHHHHHCCT-EE
T ss_pred HHHHhhhcCCcEEEecCCCChHHHHHHHHHcCCcE
Confidence 345566678999999987766 358899998875
No 438
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=25.97 E-value=80 Score=27.85 Aligned_cols=27 Identities=22% Similarity=0.347 Sum_probs=20.5
Q ss_pred hhhCCCCEEEecCCCccHHHHHHHhCCCCC
Q 039991 143 LRDHKPDCLVADIFFPWATDAAAKFGIPRL 172 (172)
Q Consensus 143 l~~~~~d~VI~D~~~~~a~~vA~~lgiP~v 172 (172)
+++.++|++|..... ..+|+++|||++
T Consensus 394 l~~~~~Dllig~s~~---~~~A~k~gIP~l 420 (513)
T TIGR01861 394 MEMLKPDIILTGKRP---GEVSKKMRVPYL 420 (513)
T ss_pred HHhcCCCEEEecCcc---chhHhhcCCCEE
Confidence 455589999987653 378999999973
No 439
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=25.87 E-value=1.7e+02 Score=19.90 Aligned_cols=36 Identities=17% Similarity=0.245 Sum_probs=26.1
Q ss_pred cceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCC
Q 039991 35 QLHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTP 72 (172)
Q Consensus 35 ~~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~ 72 (172)
...++++.+... +...++.++.|.+.|.+++++...
T Consensus 9 g~di~iia~G~~--~~~al~A~~~L~~~Gi~~~vi~~~ 44 (124)
T PF02780_consen 9 GADITIIAYGSM--VEEALEAAEELEEEGIKAGVIDLR 44 (124)
T ss_dssp SSSEEEEEETTH--HHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred CCCEEEEeehHH--HHHHHHHHHHHHHcCCceeEEeeE
Confidence 356777764443 356788999999999988887643
No 440
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=25.85 E-value=1.8e+02 Score=23.98 Aligned_cols=39 Identities=18% Similarity=0.215 Sum_probs=29.2
Q ss_pred ceEEEEcCCC-ccchHHHHHHHHHHHHCCCEEEEEeCCCC
Q 039991 36 LHVFFFPFMA-HGHMIPIVDMAKLFVTRGVKASVITTPAN 74 (172)
Q Consensus 36 ~~Ilv~p~p~-~GH~~P~l~La~~La~rGh~Vt~it~~~~ 74 (172)
.||++|..-| .|--.-..++|-.|++.|.+|-+++++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPA 41 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPA 41 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCC
Confidence 4666666444 38878889999999999988777766644
No 441
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=25.71 E-value=1.3e+02 Score=24.02 Aligned_cols=35 Identities=17% Similarity=0.176 Sum_probs=24.2
Q ss_pred HHHHHhhhCCCCEEEecCCCcc------HHHHHHHhCCCCC
Q 039991 138 PLEQLLRDHKPDCLVADIFFPW------ATDAAAKFGIPRL 172 (172)
Q Consensus 138 ~l~~ll~~~~~d~VI~D~~~~~------a~~vA~~lgiP~v 172 (172)
.+.+.++..++|+|+..--... +..+|+.||.|++
T Consensus 102 ~Laa~~~~~~~~LVl~G~qa~D~~t~qvg~~lAe~Lg~P~~ 142 (260)
T COG2086 102 ALAAAVKKIGPDLVLTGKQAIDGDTGQVGPLLAELLGWPQV 142 (260)
T ss_pred HHHHHHHhcCCCEEEEecccccCCccchHHHHHHHhCCcee
Confidence 3345556668888887543322 5799999999975
No 442
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=25.71 E-value=1.5e+02 Score=22.41 Aligned_cols=31 Identities=19% Similarity=0.124 Sum_probs=23.0
Q ss_pred cceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEe
Q 039991 35 QLHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVIT 70 (172)
Q Consensus 35 ~~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it 70 (172)
.+++++..+ | +--..+++.|.+.|++|++..
T Consensus 28 gk~v~I~G~---G--~vG~~~A~~L~~~G~~Vvv~D 58 (200)
T cd01075 28 GKTVAVQGL---G--KVGYKLAEHLLEEGAKLIVAD 58 (200)
T ss_pred CCEEEEECC---C--HHHHHHHHHHHHCCCEEEEEc
Confidence 357788754 4 344678999999999999654
No 443
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=25.61 E-value=96 Score=26.78 Aligned_cols=23 Identities=17% Similarity=0.149 Sum_probs=18.7
Q ss_pred CCCEEEecCCCccHHHHHHHhCCCCC
Q 039991 147 KPDCLVADIFFPWATDAAAKFGIPRL 172 (172)
Q Consensus 147 ~~d~VI~D~~~~~a~~vA~~lgiP~v 172 (172)
++|++|... +...+|+++|+|.+
T Consensus 381 ~~dliig~s---~~~~~A~~~gip~~ 403 (454)
T cd01973 381 ELDLILGHS---KGRYIAIDNNIPMV 403 (454)
T ss_pred CCCEEEECC---ccHHHHHHcCCCEE
Confidence 589999775 45789999999974
No 444
>CHL00194 ycf39 Ycf39; Provisional
Probab=25.43 E-value=73 Score=25.54 Aligned_cols=32 Identities=9% Similarity=0.219 Sum_probs=22.3
Q ss_pred eEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCC
Q 039991 37 HVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTP 72 (172)
Q Consensus 37 ~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~ 72 (172)
+|+++. +.|.+ -.+|+++|.++||+|+.++-.
T Consensus 2 kIlVtG--atG~i--G~~lv~~Ll~~g~~V~~l~R~ 33 (317)
T CHL00194 2 SLLVIG--ATGTL--GRQIVRQALDEGYQVRCLVRN 33 (317)
T ss_pred EEEEEC--CCcHH--HHHHHHHHHHCCCeEEEEEcC
Confidence 566664 34433 345788899999999998743
No 445
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=25.33 E-value=1e+02 Score=20.87 Aligned_cols=24 Identities=17% Similarity=0.151 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCh
Q 039991 50 IPIVDMAKLFVTRGVKASVITTPANT 75 (172)
Q Consensus 50 ~P~l~La~~La~rGh~Vt~it~~~~~ 75 (172)
.=+.++++.|.+.|++|. ++....
T Consensus 13 ~~~~~~a~~l~~~G~~i~--aT~gTa 36 (116)
T cd01423 13 PELLPTAQKLSKLGYKLY--ATEGTA 36 (116)
T ss_pred hhHHHHHHHHHHCCCEEE--EccHHH
Confidence 457899999999999883 444443
No 446
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=25.30 E-value=83 Score=26.83 Aligned_cols=35 Identities=23% Similarity=0.363 Sum_probs=25.8
Q ss_pred ceEEEEcCCC-c--cchHHHHHHHHHHHHCCCEEEEEeC
Q 039991 36 LHVFFFPFMA-H--GHMIPIVDMAKLFVTRGVKASVITT 71 (172)
Q Consensus 36 ~~Ilv~p~p~-~--GH~~P~l~La~~La~rGh~Vt~it~ 71 (172)
.-+.+=|... . ||+.|+ ...+.|+..||++.++..
T Consensus 36 vy~G~dPTg~slHlGhlv~l-~~l~~lQ~~G~~~~~lig 73 (408)
T PRK05912 36 IYLGFDPTAPSLHLGHLVPL-LKLRRFQDAGHKPIALIG 73 (408)
T ss_pred EEEeecCCCCCccHHhHHHH-HHHHHHHHCCCcEEEEEc
Confidence 3455777753 2 999985 566778899999988863
No 447
>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional
Probab=25.21 E-value=1.7e+02 Score=25.48 Aligned_cols=35 Identities=11% Similarity=0.132 Sum_probs=29.9
Q ss_pred eEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeC
Q 039991 37 HVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITT 71 (172)
Q Consensus 37 ~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~ 71 (172)
.|.|+.+.+.|--.-+..|+.+|.++|++|.++=.
T Consensus 3 Vi~IvG~sgSGKTTLiekLI~~L~~rG~rVavIKH 37 (452)
T PRK14495 3 VYGIIGWKDAGKTGLVERLVAAIAARGFSVSTVKH 37 (452)
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 35577777889999999999999999999998764
No 448
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=25.16 E-value=75 Score=25.21 Aligned_cols=33 Identities=21% Similarity=0.203 Sum_probs=23.4
Q ss_pred ceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCC
Q 039991 36 LHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTP 72 (172)
Q Consensus 36 ~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~ 72 (172)
.+|++.. +.|++- ..|+++|+++||+|+.+.-.
T Consensus 5 ~~ilVtG--atGfIG--~~l~~~L~~~g~~V~~~~r~ 37 (322)
T PLN02662 5 KVVCVTG--ASGYIA--SWLVKLLLQRGYTVKATVRD 37 (322)
T ss_pred CEEEEEC--ChHHHH--HHHHHHHHHCCCEEEEEEcC
Confidence 4566654 445554 45799999999999887644
No 449
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=25.14 E-value=2.2e+02 Score=21.26 Aligned_cols=38 Identities=16% Similarity=0.088 Sum_probs=33.7
Q ss_pred ceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCC
Q 039991 36 LHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPA 73 (172)
Q Consensus 36 ~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~ 73 (172)
.-+.+...||.|--.-.++++..++.+|..|.++.++.
T Consensus 20 ~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~ 57 (218)
T cd01394 20 TVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEG 57 (218)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCC
Confidence 44668889999999999999999999999999998864
No 450
>PRK12744 short chain dehydrogenase; Provisional
Probab=25.12 E-value=1.9e+02 Score=21.97 Aligned_cols=19 Identities=26% Similarity=0.197 Sum_probs=13.8
Q ss_pred HHHHHHHHHHCCCEEEEEe
Q 039991 52 IVDMAKLFVTRGVKASVIT 70 (172)
Q Consensus 52 ~l~La~~La~rGh~Vt~it 70 (172)
-..+++.|+++|++|.++.
T Consensus 21 G~~~a~~l~~~G~~vv~i~ 39 (257)
T PRK12744 21 GGLIARDLAAQGAKAVAIH 39 (257)
T ss_pred HHHHHHHHHHCCCcEEEEe
Confidence 4567888888888866664
No 451
>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes. Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....
Probab=25.08 E-value=1.1e+02 Score=19.80 Aligned_cols=30 Identities=10% Similarity=0.247 Sum_probs=23.6
Q ss_pred cchHHHHHHHHHHHH--CCCEEEEEeCCCChh
Q 039991 47 GHMIPIVDMAKLFVT--RGVKASVITTPANTP 76 (172)
Q Consensus 47 GH~~P~l~La~~La~--rGh~Vt~it~~~~~~ 76 (172)
.=+.|++.+.+.+.+ .+.+|+++-.....+
T Consensus 6 tGIaP~~s~l~~~~~~~~~~~v~l~~~~r~~~ 37 (109)
T PF00175_consen 6 TGIAPFLSMLRYLLERNDNRKVTLFYGARTPE 37 (109)
T ss_dssp GGGHHHHHHHHHHHHHTCTSEEEEEEEESSGG
T ss_pred eeHHHHHHHHHHHHHhCCCCCEEEEEEEcccc
Confidence 347899999999994 578999988765544
No 452
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=25.08 E-value=1.8e+02 Score=22.68 Aligned_cols=37 Identities=14% Similarity=0.103 Sum_probs=29.2
Q ss_pred eEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCC
Q 039991 37 HVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPA 73 (172)
Q Consensus 37 ~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~ 73 (172)
.|.+.-=.|.|.-.-...||..|+++|++|-++=...
T Consensus 4 iIav~~KGGVGKTT~~~nLA~~la~~G~kVLliD~Dp 40 (270)
T PRK13185 4 VLAVYGKGGIGKSTTSSNLSAAFAKLGKKVLQIGCDP 40 (270)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeccC
Confidence 3445544566999999999999999999999886553
No 453
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=25.06 E-value=1.7e+02 Score=21.90 Aligned_cols=35 Identities=9% Similarity=0.088 Sum_probs=28.7
Q ss_pred EEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCC
Q 039991 38 VFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTP 72 (172)
Q Consensus 38 Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~ 72 (172)
|.++.=+|.|--.-...||..|+++|.+|-++=..
T Consensus 3 iav~gKGGvGKTt~~~nLA~~la~~G~rvLliD~D 37 (212)
T cd02117 3 IAIYGKGGIGKSTTSQNLSAALAEMGKKVLQVGCD 37 (212)
T ss_pred EEEECCCcCcHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 45555566788899999999999999999888544
No 454
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=24.96 E-value=3.2e+02 Score=20.99 Aligned_cols=44 Identities=18% Similarity=0.113 Sum_probs=37.4
Q ss_pred cceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCChhhh
Q 039991 35 QLHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPANTPYV 78 (172)
Q Consensus 35 ~~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~ 78 (172)
...+++...+|.|--...++++..++.+|..+.++++......+
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~ 67 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEF 67 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHH
Confidence 45778999999999999999999999999999999987665443
No 455
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=24.85 E-value=1.7e+02 Score=22.92 Aligned_cols=36 Identities=11% Similarity=0.166 Sum_probs=29.3
Q ss_pred eEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCC
Q 039991 37 HVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTP 72 (172)
Q Consensus 37 ~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~ 72 (172)
.|+++.=.|.|--.-...||..|+++|.+|-++=..
T Consensus 2 ~ia~~gKGGVGKTT~a~nLA~~La~~G~~VlliD~D 37 (275)
T TIGR01287 2 QIAIYGKGGIGKSTTTQNIAAALAEMGKKVMIVGCD 37 (275)
T ss_pred eeEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 356666566788899999999999999999998554
No 456
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=24.78 E-value=84 Score=23.46 Aligned_cols=33 Identities=12% Similarity=0.068 Sum_probs=22.3
Q ss_pred ceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCC
Q 039991 36 LHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTP 72 (172)
Q Consensus 36 ~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~ 72 (172)
.++++.. +.|.+ -..+++.|+++|++|+.+...
T Consensus 6 ~~ilItG--asg~i--G~~l~~~l~~~g~~v~~~~r~ 38 (246)
T PRK05653 6 KTALVTG--ASRGI--GRAIALRLAADGAKVVIYDSN 38 (246)
T ss_pred CEEEEEC--CCcHH--HHHHHHHHHHCCCEEEEEeCC
Confidence 3566554 23433 367889999999998777654
No 457
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=24.78 E-value=1.8e+02 Score=20.24 Aligned_cols=35 Identities=11% Similarity=0.119 Sum_probs=29.0
Q ss_pred EEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCC
Q 039991 39 FFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPA 73 (172)
Q Consensus 39 lv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~ 73 (172)
++++..+.|--.-.+.|++.|.++|.+|.++=+..
T Consensus 3 ~~~~~~~~Gkt~~~~~l~~~l~~~~~~v~~~kp~~ 37 (134)
T cd03109 3 GFGTGTDIGKTVATAILARALKEKGYRVAPLKPVQ 37 (134)
T ss_pred EEeCCCCcCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 45566667888889999999999999999987664
No 458
>PRK07667 uridine kinase; Provisional
Probab=24.75 E-value=2.7e+02 Score=20.59 Aligned_cols=40 Identities=5% Similarity=0.073 Sum_probs=34.7
Q ss_pred cceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCC
Q 039991 35 QLHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPAN 74 (172)
Q Consensus 35 ~~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~ 74 (172)
+..|++-..+|.|--.-.-.|++.|.+.|..++++..+.+
T Consensus 17 ~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~ 56 (193)
T PRK07667 17 RFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDY 56 (193)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcc
Confidence 4567788888999998899999999999999999998864
No 459
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=24.69 E-value=2.4e+02 Score=22.24 Aligned_cols=50 Identities=8% Similarity=0.021 Sum_probs=32.0
Q ss_pred hhhhhcCCCCCCCcceEEEEcCCCccchHHHHHHHHHHHHCCC-EEEEEeCC
Q 039991 22 YLIRKLNMGSEIPQLHVFFFPFMAHGHMIPIVDMAKLFVTRGV-KASVITTP 72 (172)
Q Consensus 22 ~~~~~~~M~~~~~~~~Ilv~p~p~~GH~~P~l~La~~La~rGh-~Vt~it~~ 72 (172)
.+++-+.... +..++|+++|..+...-.-.-...+.|.+.|. +|+++...
T Consensus 16 i~~~~~~lag-~~~~rI~~iptAS~~~~~~~~~~~~~~~~lG~~~v~~l~i~ 66 (250)
T TIGR02069 16 ILREFVSRAG-GEDAIIVIITSASEEPREVGERYITIFSRLGVKEVKILDVR 66 (250)
T ss_pred HHHHHHHHhC-CCCceEEEEeCCCCChHHHHHHHHHHHHHcCCceeEEEecC
Confidence 4444455554 33579999998875433334456667788898 47766653
No 460
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=24.67 E-value=2.6e+02 Score=22.78 Aligned_cols=34 Identities=15% Similarity=0.070 Sum_probs=25.5
Q ss_pred cceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCC
Q 039991 35 QLHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPA 73 (172)
Q Consensus 35 ~~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~ 73 (172)
..+|+++- .| .--+..|..|+++|++|+++....
T Consensus 18 ~~~VvIIG---~G--~aGl~aA~~l~~~g~~v~lie~~~ 51 (352)
T PRK12770 18 GKKVAIIG---AG--PAGLAAAGYLACLGYEVHVYDKLP 51 (352)
T ss_pred CCEEEEEC---cC--HHHHHHHHHHHHCCCcEEEEeCCC
Confidence 46888885 34 333678888999999999998653
No 461
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=24.61 E-value=65 Score=22.25 Aligned_cols=31 Identities=13% Similarity=0.340 Sum_probs=17.6
Q ss_pred ceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeC
Q 039991 36 LHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITT 71 (172)
Q Consensus 36 ~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~ 71 (172)
..++++. |-|.+.| +++.|.++|.+|.+++.
T Consensus 97 d~ivLvS--gD~Df~~---~v~~l~~~g~~V~v~~~ 127 (146)
T PF01936_consen 97 DTIVLVS--GDSDFAP---LVRKLRERGKRVIVVGA 127 (146)
T ss_dssp SEEEEE-----GGGHH---HHHHHHHH--EEEEEE-
T ss_pred CEEEEEE--CcHHHHH---HHHHHHHcCCEEEEEEe
Confidence 4566665 6677655 45566688999999994
No 462
>PF07972 Flavodoxin_NdrI: NrdI Flavodoxin like ; InterPro: IPR004465 Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterised classes of RNRs differ by their metal cofactor and their stable organic radical. Class Ib RNR is encoded in four different genes: nrdH, nrdI, nrdE and nrdF []. The exact function of NrdI within the ribonucleotide reductases has not yet been fully characterised.; PDB: 1RLJ_A 3N39_C 3N3B_D 3N3A_C 2XOE_A 2XOD_A 2X2P_A 2X2O_A.
Probab=24.58 E-value=32 Score=24.19 Aligned_cols=19 Identities=42% Similarity=0.599 Sum_probs=13.7
Q ss_pred cCCCccHHHHHHHhCCCCC
Q 039991 154 DIFFPWATDAAAKFGIPRL 172 (172)
Q Consensus 154 D~~~~~a~~vA~~lgiP~v 172 (172)
+.|+..|-.+|+++++|.+
T Consensus 87 ~~f~~aa~~ia~ky~VPll 105 (122)
T PF07972_consen 87 DNFCLAADKIAEKYGVPLL 105 (122)
T ss_dssp GGTTHHHHHHHHHHT--EE
T ss_pred HHHHHHHHHHHHHcCCCEE
Confidence 4677778899999999963
No 463
>KOG1455 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=24.42 E-value=1.8e+02 Score=23.99 Aligned_cols=60 Identities=22% Similarity=0.172 Sum_probs=38.2
Q ss_pred eeeecCchhhhhhhhcCCCCCCCcceEEEEcCCCccch-HHHHHHHHHHHHCCCEEEEEeCC
Q 039991 12 AFTNNSSLSLYLIRKLNMGSEIPQLHVFFFPFMAHGHM-IPIVDMAKLFVTRGVKASVITTP 72 (172)
Q Consensus 12 ~~~~~~~~~~~~~~~~~M~~~~~~~~Ilv~p~p~~GH~-~P~l~La~~La~rGh~Vt~it~~ 72 (172)
-|+|--...++-+.-++-.....+..| ++.-...+|. .-+..+|+.|+..|..|--+--.
T Consensus 31 ~~~n~rG~~lft~~W~p~~~~~pr~lv-~~~HG~g~~~s~~~~~~a~~l~~~g~~v~a~D~~ 91 (313)
T KOG1455|consen 31 FFTNPRGAKLFTQSWLPLSGTEPRGLV-FLCHGYGEHSSWRYQSTAKRLAKSGFAVYAIDYE 91 (313)
T ss_pred eEEcCCCCEeEEEecccCCCCCCceEE-EEEcCCcccchhhHHHHHHHHHhCCCeEEEeecc
Confidence 355555556666666665543323333 3333444776 77888999999999998776544
No 464
>PF12846 AAA_10: AAA-like domain
Probab=24.31 E-value=1.6e+02 Score=22.83 Aligned_cols=37 Identities=11% Similarity=0.285 Sum_probs=33.5
Q ss_pred ceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCC
Q 039991 36 LHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTP 72 (172)
Q Consensus 36 ~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~ 72 (172)
.|++++..+|.|--.-+..+...+..+|..|.++=+.
T Consensus 2 ~h~~i~G~tGsGKT~~~~~l~~~~~~~g~~~~i~D~~ 38 (304)
T PF12846_consen 2 PHTLILGKTGSGKTTLLKNLLEQLIRRGPRVVIFDPK 38 (304)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 5899999999999999999999999999999998444
No 465
>PRK06194 hypothetical protein; Provisional
Probab=24.29 E-value=82 Score=24.52 Aligned_cols=20 Identities=15% Similarity=0.169 Sum_probs=16.7
Q ss_pred HHHHHHHHHHCCCEEEEEeC
Q 039991 52 IVDMAKLFVTRGVKASVITT 71 (172)
Q Consensus 52 ~l~La~~La~rGh~Vt~it~ 71 (172)
-.+|+++|+++|++|+++.-
T Consensus 19 G~~la~~l~~~G~~V~~~~r 38 (287)
T PRK06194 19 GLAFARIGAALGMKLVLADV 38 (287)
T ss_pred HHHHHHHHHHCCCEEEEEeC
Confidence 46789999999999988764
No 466
>PHA02518 ParA-like protein; Provisional
Probab=24.29 E-value=2.1e+02 Score=20.99 Aligned_cols=31 Identities=13% Similarity=0.178 Sum_probs=26.0
Q ss_pred CCccchHHHHHHHHHHHHCCCEEEEEeCCCC
Q 039991 44 MAHGHMIPIVDMAKLFVTRGVKASVITTPAN 74 (172)
Q Consensus 44 p~~GH~~P~l~La~~La~rGh~Vt~it~~~~ 74 (172)
.|.|--.-...||..|+++|.+|.++-....
T Consensus 10 GGvGKTT~a~~la~~la~~g~~vlliD~D~q 40 (211)
T PHA02518 10 GGAGKTTVATNLASWLHADGHKVLLVDLDPQ 40 (211)
T ss_pred CCCCHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 3458888899999999999999999877644
No 467
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=24.26 E-value=2.4e+02 Score=20.68 Aligned_cols=37 Identities=11% Similarity=0.281 Sum_probs=30.8
Q ss_pred ceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCC
Q 039991 36 LHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTP 72 (172)
Q Consensus 36 ~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~ 72 (172)
.-|.+...++.|--.-...|.++|.++|..|.++-..
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD 39 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGD 39 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCc
Confidence 4566888899999999999999999999999998644
No 468
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=24.20 E-value=1e+02 Score=24.57 Aligned_cols=35 Identities=37% Similarity=0.647 Sum_probs=23.1
Q ss_pred HHHHHhhhCCCCEEEecCCC--ccHHHHHHHhCCCCC
Q 039991 138 PLEQLLRDHKPDCLVADIFF--PWATDAAAKFGIPRL 172 (172)
Q Consensus 138 ~l~~ll~~~~~d~VI~D~~~--~~a~~vA~~lgiP~v 172 (172)
.+..++++.+||+|..-... ..+..++.++|+|++
T Consensus 73 ~~~~~~~~~~~dvvh~~~~~~~~~~~~~~~~~~~p~i 109 (367)
T cd05844 73 QLRRLLRRHRPDLVHAHFGFDGVYALPLARRLGVPLV 109 (367)
T ss_pred HHHHHHHhhCCCEEEeccCchHHHHHHHHHHcCCCEE
Confidence 33446777799988874322 224567888999964
No 469
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=24.13 E-value=1.6e+02 Score=23.67 Aligned_cols=30 Identities=17% Similarity=0.279 Sum_probs=20.8
Q ss_pred hhhCCCCEEEecCCC--ccHHHHHHHhCCCCC
Q 039991 143 LRDHKPDCLVADIFF--PWATDAAAKFGIPRL 172 (172)
Q Consensus 143 l~~~~~d~VI~D~~~--~~a~~vA~~lgiP~v 172 (172)
+.+.++|+|+.=..- +.|..+|..||+|.+
T Consensus 124 ~~~~~iD~VvgvetkGIpLA~avA~~L~vp~v 155 (268)
T TIGR01743 124 FAEREIDAVMTVATKGIPLAYAVASVLNVPLV 155 (268)
T ss_pred hcCCCCCEEEEEccchHHHHHHHHHHHCCCEE
Confidence 344479988864333 336789999999964
No 470
>PRK11823 DNA repair protein RadA; Provisional
Probab=24.10 E-value=2.1e+02 Score=24.62 Aligned_cols=44 Identities=11% Similarity=0.067 Sum_probs=37.8
Q ss_pred ceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCChhhhh
Q 039991 36 LHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPANTPYVS 79 (172)
Q Consensus 36 ~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~~ 79 (172)
.-+++..-||.|--.-+++++..++.+|.+|.|++.+....++.
T Consensus 81 s~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~ 124 (446)
T PRK11823 81 SVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIK 124 (446)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHH
Confidence 45678899999999999999999999999999999987655543
No 471
>PRK13700 conjugal transfer protein TraD; Provisional
Probab=24.10 E-value=1.8e+02 Score=27.04 Aligned_cols=47 Identities=13% Similarity=0.084 Sum_probs=39.1
Q ss_pred cCCCCCCCcceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCC
Q 039991 27 LNMGSEIPQLHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPA 73 (172)
Q Consensus 27 ~~M~~~~~~~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~ 73 (172)
++|-......|++++..+|.|--+-+..|.+...+||.++.++=+..
T Consensus 177 vPip~~~E~~H~li~GttGSGKS~~i~~LL~~ir~RGdrAIIyD~~G 223 (732)
T PRK13700 177 LPIIRDSEIQNFCLHGTVGAGKSEVIRRLANYARQRGDMVVIYDRSG 223 (732)
T ss_pred ccCCcchhhcceEEeCCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 44544334679999999999999999999999999999988877653
No 472
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=24.09 E-value=1.4e+02 Score=23.03 Aligned_cols=35 Identities=11% Similarity=0.190 Sum_probs=30.0
Q ss_pred EEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCC
Q 039991 38 VFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTP 72 (172)
Q Consensus 38 Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~ 72 (172)
|++...||.|--.-...|++.|...|.+|.++..+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D 36 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTD 36 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccH
Confidence 67888999999999999999998889988887654
No 473
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=23.99 E-value=1.3e+02 Score=25.76 Aligned_cols=35 Identities=14% Similarity=0.169 Sum_probs=27.0
Q ss_pred cceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCC
Q 039991 35 QLHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPAN 74 (172)
Q Consensus 35 ~~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~ 74 (172)
+++|+++...++-| +|++.|.+.++-..+++.+.+
T Consensus 4 ~~kvLviG~g~reh-----al~~~~~~~~~~~~~~~~pgn 38 (426)
T PRK13789 4 KLKVLLIGSGGRES-----AIAFALRKSNLLSELKVFPGN 38 (426)
T ss_pred CcEEEEECCCHHHH-----HHHHHHHhCCCCCEEEEECCc
Confidence 58999999888887 589999988866566665544
No 474
>PRK06101 short chain dehydrogenase; Provisional
Probab=23.97 E-value=90 Score=23.68 Aligned_cols=19 Identities=11% Similarity=0.118 Sum_probs=16.4
Q ss_pred HHHHHHHHHCCCEEEEEeC
Q 039991 53 VDMAKLFVTRGVKASVITT 71 (172)
Q Consensus 53 l~La~~La~rGh~Vt~it~ 71 (172)
.++++.|+++|++|.++.-
T Consensus 15 ~~la~~L~~~G~~V~~~~r 33 (240)
T PRK06101 15 KQLALDYAKQGWQVIACGR 33 (240)
T ss_pred HHHHHHHHhCCCEEEEEEC
Confidence 6789999999999988764
No 475
>PRK06179 short chain dehydrogenase; Provisional
Probab=23.93 E-value=89 Score=24.08 Aligned_cols=32 Identities=9% Similarity=-0.023 Sum_probs=22.3
Q ss_pred eEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCC
Q 039991 37 HVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTP 72 (172)
Q Consensus 37 ~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~ 72 (172)
.+++.. +.|-+ -.+++++|+++|++|+.+.-.
T Consensus 6 ~vlVtG--asg~i--G~~~a~~l~~~g~~V~~~~r~ 37 (270)
T PRK06179 6 VALVTG--ASSGI--GRATAEKLARAGYRVFGTSRN 37 (270)
T ss_pred EEEEec--CCCHH--HHHHHHHHHHCCCEEEEEeCC
Confidence 344443 33444 468999999999999887754
No 476
>PLN02583 cinnamoyl-CoA reductase
Probab=23.92 E-value=88 Score=24.84 Aligned_cols=32 Identities=19% Similarity=0.196 Sum_probs=21.8
Q ss_pred ceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeC
Q 039991 36 LHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITT 71 (172)
Q Consensus 36 ~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~ 71 (172)
.+|++.. +.|-+ -..++++|+++||+|+.+.-
T Consensus 7 k~vlVTG--atG~I--G~~lv~~Ll~~G~~V~~~~R 38 (297)
T PLN02583 7 KSVCVMD--ASGYV--GFWLVKRLLSRGYTVHAAVQ 38 (297)
T ss_pred CEEEEEC--CCCHH--HHHHHHHHHhCCCEEEEEEc
Confidence 4555554 33333 35688999999999998764
No 477
>TIGR01307 pgm_bpd_ind 2,3-bisphosphoglycerate-independent phosphoglycerate mutase. This protein is about double in length of, and devoid of homology to the form of phosphoglycerate mutase that uses 2,3-bisphosphoglycerate as a cofactor.
Probab=23.90 E-value=1.6e+02 Score=26.06 Aligned_cols=56 Identities=20% Similarity=0.265 Sum_probs=38.9
Q ss_pred eeeecCchhhhhhhhcCCCCCCCcceEE-EEcCCCc-cchHHHHHHHHHHHHCCC-EEEEEe
Q 039991 12 AFTNNSSLSLYLIRKLNMGSEIPQLHVF-FFPFMAH-GHMIPIVDMAKLFVTRGV-KASVIT 70 (172)
Q Consensus 12 ~~~~~~~~~~~~~~~~~M~~~~~~~~Il-v~p~p~~-GH~~P~l~La~~La~rGh-~Vt~it 70 (172)
.|.+|..|...+.+.-. ..++.|++ ++.-.+. ||+.=+.+|.+..+++|. +|.+-.
T Consensus 87 ~~~~n~~l~~~~~~~~~---~~~~lHl~GL~SdGgVHsh~~hl~~l~~~a~~~g~~~v~vH~ 145 (501)
T TIGR01307 87 EFFANPALLGAIDRAKD---NNGKLHLMGLVSDGGVHSHIDHLIALIELAAERGIEKVVLHA 145 (501)
T ss_pred CcccCHHHHHHHHHHHh---cCCceEEEEeccCCCCcchHHHHHHHHHHHHHcCCCeEEEEE
Confidence 35566667666665431 13457876 6665555 999999999999999999 555433
No 478
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=23.89 E-value=1.8e+02 Score=22.84 Aligned_cols=36 Identities=14% Similarity=0.087 Sum_probs=28.9
Q ss_pred eEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCC
Q 039991 37 HVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTP 72 (172)
Q Consensus 37 ~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~ 72 (172)
.|.|+.=.|.|--.-...||..|+++|.+|-++=..
T Consensus 3 ~iav~~KGGVGKTT~~~nLA~~La~~G~rVLlID~D 38 (274)
T PRK13235 3 KVAIYGKGGIGKSTTTQNTVAGLAEMGKKVMVVGCD 38 (274)
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 355665456688899999999999999999998544
No 479
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=23.86 E-value=1.3e+02 Score=23.86 Aligned_cols=17 Identities=24% Similarity=0.280 Sum_probs=14.1
Q ss_pred HHHHHHHHCCCEEEEEe
Q 039991 54 DMAKLFVTRGVKASVIT 70 (172)
Q Consensus 54 ~La~~La~rGh~Vt~it 70 (172)
+|++++++.|++|.-..
T Consensus 23 ala~ef~~~G~~V~Ata 39 (289)
T KOG1209|consen 23 ALAKEFARNGYLVYATA 39 (289)
T ss_pred HHHHHHHhCCeEEEEEc
Confidence 69999999999986443
No 480
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=23.86 E-value=89 Score=25.30 Aligned_cols=31 Identities=6% Similarity=0.126 Sum_probs=22.0
Q ss_pred eEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCC
Q 039991 37 HVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTP 72 (172)
Q Consensus 37 ~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~ 72 (172)
+|.++...+.| ..||..|++.||+|+++...
T Consensus 2 kI~IiGaGa~G-----~ala~~L~~~g~~V~l~~r~ 32 (326)
T PRK14620 2 KISILGAGSFG-----TAIAIALSSKKISVNLWGRN 32 (326)
T ss_pred EEEEECcCHHH-----HHHHHHHHHCCCeEEEEecC
Confidence 45666544333 45788899999999988764
No 481
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=23.85 E-value=1.9e+02 Score=21.91 Aligned_cols=37 Identities=19% Similarity=0.200 Sum_probs=30.3
Q ss_pred EEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCC
Q 039991 38 VFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPAN 74 (172)
Q Consensus 38 Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~ 74 (172)
+++..-+|.|--.-...||..++++|.+|-++.....
T Consensus 2 ~~~~g~~g~Gkt~~~~~la~~~a~~g~~~~l~~~d~~ 38 (217)
T cd02035 2 IFFTGKGGVGKTTIAAATAVRLAEEGKKVLLVSTDPA 38 (217)
T ss_pred EEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 3455666778888899999999999999999987744
No 482
>PRK05434 phosphoglyceromutase; Provisional
Probab=23.82 E-value=1.5e+02 Score=26.26 Aligned_cols=55 Identities=20% Similarity=0.195 Sum_probs=38.3
Q ss_pred eeecCchhhhhhhhcCCCCCCCcceEE-EEcCCCc-cchHHHHHHHHHHHHCCC-EEEEEe
Q 039991 13 FTNNSSLSLYLIRKLNMGSEIPQLHVF-FFPFMAH-GHMIPIVDMAKLFVTRGV-KASVIT 70 (172)
Q Consensus 13 ~~~~~~~~~~~~~~~~M~~~~~~~~Il-v~p~p~~-GH~~P~l~La~~La~rGh-~Vt~it 70 (172)
|-+|..|...+.+.- ...++.|++ ++.-.+. ||+.=+..|.+.++++|. +|.+-.
T Consensus 92 ~~~n~~~~~~~~~~~---~~~~~lHl~GL~SdggVHsh~~hl~~l~~~a~~~g~~~v~vH~ 149 (507)
T PRK05434 92 FFENPALLDAIDKAK---KNGGALHLMGLLSDGGVHSHIDHLFALLELAKEEGVKKVYVHA 149 (507)
T ss_pred cccCHHHHHHHHHHH---hcCCeEEEEEeccCCCcccHHHHHHHHHHHHHHcCCCEEEEEE
Confidence 456666666665542 113467876 6666665 999999999999999998 665544
No 483
>PRK10481 hypothetical protein; Provisional
Probab=23.75 E-value=1.6e+02 Score=22.96 Aligned_cols=28 Identities=21% Similarity=0.236 Sum_probs=22.3
Q ss_pred hCCCCEEEecCCCccH---HHHHHHhCCCCC
Q 039991 145 DHKPDCLVADIFFPWA---TDAAAKFGIPRL 172 (172)
Q Consensus 145 ~~~~d~VI~D~~~~~a---~~vA~~lgiP~v 172 (172)
+.+.|+|+.|.+.... ..+.+.+|+|+|
T Consensus 180 ~~gaD~Ivl~C~G~~~~~~~~le~~lg~PVI 210 (224)
T PRK10481 180 DQGADVIVLDCLGYHQRHRDLLQKALDVPVL 210 (224)
T ss_pred cCCCCEEEEeCCCcCHHHHHHHHHHHCcCEE
Confidence 3589999999877662 478889999975
No 484
>PRK12827 short chain dehydrogenase; Provisional
Probab=23.71 E-value=86 Score=23.56 Aligned_cols=32 Identities=16% Similarity=0.179 Sum_probs=22.4
Q ss_pred ceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeC
Q 039991 36 LHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITT 71 (172)
Q Consensus 36 ~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~ 71 (172)
+++++.. +.|.+- ..|++.|+++|++|+++..
T Consensus 7 ~~ilItG--asg~iG--~~la~~l~~~g~~v~~~~~ 38 (249)
T PRK12827 7 RRVLITG--GSGGLG--RAIAVRLAADGADVIVLDI 38 (249)
T ss_pred CEEEEEC--CCChHH--HHHHHHHHHCCCeEEEEcC
Confidence 4555554 334443 5889999999999988653
No 485
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=23.64 E-value=93 Score=23.41 Aligned_cols=22 Identities=14% Similarity=0.158 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHCCCEEEEEeCC
Q 039991 51 PIVDMAKLFVTRGVKASVITTP 72 (172)
Q Consensus 51 P~l~La~~La~rGh~Vt~it~~ 72 (172)
--..|++.|+++|++|.++.-.
T Consensus 19 iG~~l~~~L~~~G~~Vi~~~r~ 40 (239)
T PRK07666 19 IGRAVAIALAKEGVNVGLLART 40 (239)
T ss_pred HHHHHHHHHHHCCCEEEEEeCC
Confidence 3567889999999999887754
No 486
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=23.62 E-value=1.9e+02 Score=21.95 Aligned_cols=37 Identities=11% Similarity=0.034 Sum_probs=29.9
Q ss_pred EEEEc-CCCccchHHHHHHHHHHHHCCCEEEEEeCCCC
Q 039991 38 VFFFP-FMAHGHMIPIVDMAKLFVTRGVKASVITTPAN 74 (172)
Q Consensus 38 Ilv~p-~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~ 74 (172)
|.|+. -+|.|--.-...||..|+++|.+|-++-....
T Consensus 4 I~v~s~KGGvGKTt~a~nla~~la~~g~~VlliD~D~q 41 (246)
T TIGR03371 4 IAIVGVKGGVGKTTLTANLASALKLLGEPVLAIDLDPQ 41 (246)
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCc
Confidence 44444 45668889999999999999999999988754
No 487
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=23.54 E-value=2.3e+02 Score=20.52 Aligned_cols=36 Identities=17% Similarity=0.293 Sum_probs=30.2
Q ss_pred ceEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCCC
Q 039991 36 LHVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPAN 74 (172)
Q Consensus 36 ~~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~ 74 (172)
.+|+++. -+|-+....++..|+.-|.+++++++...
T Consensus 3 l~i~~vG---D~~~rv~~Sl~~~~~~~g~~~~~~~P~~~ 38 (158)
T PF00185_consen 3 LKIAYVG---DGHNRVAHSLIELLAKFGMEVVLIAPEGL 38 (158)
T ss_dssp EEEEEES---STTSHHHHHHHHHHHHTTSEEEEESSGGG
T ss_pred CEEEEEC---CCCChHHHHHHHHHHHcCCEEEEECCCcc
Confidence 4666664 48889999999999999999999999873
No 488
>CHL00175 minD septum-site determining protein; Validated
Probab=23.51 E-value=2.1e+02 Score=22.49 Aligned_cols=39 Identities=8% Similarity=0.114 Sum_probs=29.2
Q ss_pred cceEE-EEc-CCCccchHHHHHHHHHHHHCCCEEEEEeCCC
Q 039991 35 QLHVF-FFP-FMAHGHMIPIVDMAKLFVTRGVKASVITTPA 73 (172)
Q Consensus 35 ~~~Il-v~p-~p~~GH~~P~l~La~~La~rGh~Vt~it~~~ 73 (172)
+.+++ |+. -+|.|--.-...||..|+++|.+|.++-...
T Consensus 14 ~~~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vlliD~D~ 54 (281)
T CHL00175 14 MSRIIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDADI 54 (281)
T ss_pred CceEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 33444 433 3555888999999999999999998886654
No 489
>PRK07454 short chain dehydrogenase; Provisional
Probab=23.50 E-value=92 Score=23.47 Aligned_cols=22 Identities=14% Similarity=0.095 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHCCCEEEEEeCC
Q 039991 51 PIVDMAKLFVTRGVKASVITTP 72 (172)
Q Consensus 51 P~l~La~~La~rGh~Vt~it~~ 72 (172)
--..++++|+++|++|+++.-.
T Consensus 18 iG~~la~~l~~~G~~V~~~~r~ 39 (241)
T PRK07454 18 IGKATALAFAKAGWDLALVARS 39 (241)
T ss_pred HHHHHHHHHHHCCCEEEEEeCC
Confidence 4567899999999999887743
No 490
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=23.49 E-value=1.5e+02 Score=21.96 Aligned_cols=24 Identities=13% Similarity=0.379 Sum_probs=19.0
Q ss_pred HHHHHHHHHCCCEEEEEeCCCChh
Q 039991 53 VDMAKLFVTRGVKASVITTPANTP 76 (172)
Q Consensus 53 l~La~~La~rGh~Vt~it~~~~~~ 76 (172)
-.|++.|.++|++|+.++......
T Consensus 12 ~~l~~~l~~~g~~v~~~~~~~~~~ 35 (236)
T PF01370_consen 12 SALVRQLLKKGHEVIVLSRSSNSE 35 (236)
T ss_dssp HHHHHHHHHTTTEEEEEESCSTGG
T ss_pred HHHHHHHHHcCCcccccccccccc
Confidence 357999999999999877765543
No 491
>PRK07102 short chain dehydrogenase; Provisional
Probab=23.45 E-value=91 Score=23.58 Aligned_cols=21 Identities=10% Similarity=0.178 Sum_probs=17.6
Q ss_pred HHHHHHHHHHCCCEEEEEeCC
Q 039991 52 IVDMAKLFVTRGVKASVITTP 72 (172)
Q Consensus 52 ~l~La~~La~rGh~Vt~it~~ 72 (172)
-..++++|+++|++|+++.-.
T Consensus 14 G~~~a~~l~~~G~~Vi~~~r~ 34 (243)
T PRK07102 14 ARACARRYAAAGARLYLAARD 34 (243)
T ss_pred HHHHHHHHHhcCCEEEEEeCC
Confidence 478899999999999888654
No 492
>PF01963 TraB: TraB family; InterPro: IPR002816 In prokaryotes, for example Enterococcus faecalis (Streptococcus faecalis), the conjugative transfer of certain plasmids is controlled by peptide pheromones []. Plasmid free recipient cells secret plasmid specific oligopeptides, termed sex pheromones. They induce bacterial clumping and specifically activate the conjugative transfer of the corresponding plasmid. Once recipient cells acquire the plasmid they start to produce a pheromone inhibitor to block the activity of the pheromone and to prevent plasmid containing cells from clumping; they also become donor cells able to transfer the plasmid to plasmid free recipient cells. Examples of such plasmid-pheromone systems are bacteriocin plasmid pPD1 [], haemolysin/bacteriocin plasmid, pAD1 [], tetracycline-resistance plasmid, pCF10 [], and the haemolysin/bacteriocin plasmid, pOB1 []. TraB in combination with another factor contributes to pheromone shutdown in cells that have acquired a plasmid. It exact function has not yet been determined [, ]. This entry also contains plant and mammalian proteins, suggesting that these Trab-related proteins may have a somewhat wider or different function in eukaryotes.
Probab=23.40 E-value=55 Score=25.30 Aligned_cols=23 Identities=17% Similarity=0.277 Sum_probs=21.3
Q ss_pred CccchHHHHHHHHHHHHCCCEEE
Q 039991 45 AHGHMIPIVDMAKLFVTRGVKAS 67 (172)
Q Consensus 45 ~~GH~~P~l~La~~La~rGh~Vt 67 (172)
|.||+.---.+-..|.++|++|+
T Consensus 235 Ga~HL~G~~gvl~lLr~~Gy~V~ 257 (259)
T PF01963_consen 235 GAGHLPGEDGVLDLLRKKGYTVE 257 (259)
T ss_pred cchhccchhhHHHHHHhCCceee
Confidence 78999988899999999999997
No 493
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=23.39 E-value=77 Score=24.62 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHCCCEEEEEeCCCCh
Q 039991 51 PIVDMAKLFVTRGVKASVITTPANT 75 (172)
Q Consensus 51 P~l~La~~La~rGh~Vt~it~~~~~ 75 (172)
+.+.|.+.+.++|..|.++|.....
T Consensus 119 ~a~~l~~~~~~~G~~V~~iT~R~~~ 143 (229)
T PF03767_consen 119 GALELYNYARSRGVKVFFITGRPES 143 (229)
T ss_dssp THHHHHHHHHHTTEEEEEEEEEETT
T ss_pred HHHHHHHHHHHCCCeEEEEecCCch
Confidence 4889999999999999999987543
No 494
>PRK07890 short chain dehydrogenase; Provisional
Probab=23.30 E-value=94 Score=23.62 Aligned_cols=20 Identities=10% Similarity=-0.006 Sum_probs=16.7
Q ss_pred HHHHHHHHHHCCCEEEEEeC
Q 039991 52 IVDMAKLFVTRGVKASVITT 71 (172)
Q Consensus 52 ~l~La~~La~rGh~Vt~it~ 71 (172)
-..+++.|+++|++|.++.-
T Consensus 18 G~~la~~l~~~G~~V~~~~r 37 (258)
T PRK07890 18 GRTLAVRAARAGADVVLAAR 37 (258)
T ss_pred HHHHHHHHHHcCCEEEEEeC
Confidence 46789999999999987764
No 495
>PRK06180 short chain dehydrogenase; Provisional
Probab=23.29 E-value=92 Score=24.26 Aligned_cols=32 Identities=6% Similarity=-0.021 Sum_probs=22.6
Q ss_pred eEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCC
Q 039991 37 HVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTP 72 (172)
Q Consensus 37 ~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~ 72 (172)
.+++.. +.|.+ -.+++++|+++|++|..+.-.
T Consensus 6 ~vlVtG--asggi--G~~la~~l~~~G~~V~~~~r~ 37 (277)
T PRK06180 6 TWLITG--VSSGF--GRALAQAALAAGHRVVGTVRS 37 (277)
T ss_pred EEEEec--CCChH--HHHHHHHHHhCcCEEEEEeCC
Confidence 344443 44543 678899999999999887754
No 496
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=23.24 E-value=2.1e+02 Score=23.41 Aligned_cols=37 Identities=14% Similarity=0.195 Sum_probs=28.0
Q ss_pred cceEEEEcCCCccchHHH-HHHHHHHHHCCCEEEEEeC
Q 039991 35 QLHVFFFPFMAHGHMIPI-VDMAKLFVTRGVKASVITT 71 (172)
Q Consensus 35 ~~~Ilv~p~p~~GH~~P~-l~La~~La~rGh~Vt~it~ 71 (172)
..+|++++-+...+...+ ..|++.|.++|++|.+...
T Consensus 5 ~~~I~iv~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~ 42 (306)
T PRK03372 5 SRRVLLVAHTGRDEATEAARRVAKQLGDAGIGVRVLDA 42 (306)
T ss_pred ccEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEeec
Confidence 457999988887666544 4677778999999988653
No 497
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=23.23 E-value=2e+02 Score=23.21 Aligned_cols=37 Identities=5% Similarity=0.157 Sum_probs=30.3
Q ss_pred eEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCCC
Q 039991 37 HVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTPA 73 (172)
Q Consensus 37 ~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~~ 73 (172)
.|+|+.=+|.|--.-...||..|+.+|++|-++-...
T Consensus 2 vIav~gKGGvGKTT~a~nLA~~La~~g~rVLlID~Dp 38 (296)
T TIGR02016 2 IIAIYGKGGSGKSFTTTNLSHMMAEMGKRVLQLGCDP 38 (296)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEecC
Confidence 3556655666888999999999999999999988764
No 498
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=23.22 E-value=1.8e+02 Score=22.84 Aligned_cols=36 Identities=11% Similarity=0.134 Sum_probs=28.0
Q ss_pred eEEEEcCCCccchHHHHHHHHHHHHCCCEEEEEeCC
Q 039991 37 HVFFFPFMAHGHMIPIVDMAKLFVTRGVKASVITTP 72 (172)
Q Consensus 37 ~Ilv~p~p~~GH~~P~l~La~~La~rGh~Vt~it~~ 72 (172)
.|.++.=.|.|--.-...||..|+++|.+|-++=..
T Consensus 3 ~iav~gKGGVGKTT~a~nLA~~La~~G~rVllvD~D 38 (273)
T PRK13232 3 QIAIYGKGGIGKSTTTQNLTAALSTMGNKILLVGCD 38 (273)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhhCCCeEEEecc
Confidence 345554445577789999999999999999998544
No 499
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=23.15 E-value=81 Score=25.45 Aligned_cols=23 Identities=22% Similarity=0.208 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHCCCEEEEEeCCC
Q 039991 51 PIVDMAKLFVTRGVKASVITTPA 73 (172)
Q Consensus 51 P~l~La~~La~rGh~Vt~it~~~ 73 (172)
.-..|+++|.+.|..||+++-..
T Consensus 148 qG~~la~eL~~~GI~vtlI~Dsa 170 (275)
T PRK08335 148 EGLALANELEFLGIEFEVITDAQ 170 (275)
T ss_pred hHHHHHHHHHHCCCCEEEEeccH
Confidence 34567999999999999998654
No 500
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=23.10 E-value=1.3e+02 Score=24.41 Aligned_cols=27 Identities=7% Similarity=-0.114 Sum_probs=22.8
Q ss_pred chHHHHHHHHHHHHCCCEEEEEeCCCC
Q 039991 48 HMIPIVDMAKLFVTRGVKASVITTPAN 74 (172)
Q Consensus 48 H~~P~l~La~~La~rGh~Vt~it~~~~ 74 (172)
+......|.++.++|||+|.++.+...
T Consensus 16 ~~~st~~L~~aa~~rG~~v~~~~~~~l 42 (312)
T TIGR01380 16 GKDTTFALMEEAQKRGHELFFYEPGDL 42 (312)
T ss_pred CcChHHHHHHHHHHcCCEEEEEehhhe
Confidence 445678899999999999999998854
Done!