BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039995
(118 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1J0A|A Chain A, Crystal Structure Analysis Of The Acc Deaminase Homologue
pdb|1J0A|B Chain B, Crystal Structure Analysis Of The Acc Deaminase Homologue
pdb|1J0A|C Chain C, Crystal Structure Analysis Of The Acc Deaminase Homologue
pdb|1J0B|A Chain A, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|B Chain B, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|C Chain C, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|D Chain D, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|E Chain E, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|F Chain F, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|G Chain G, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|H Chain H, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|I Chain I, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|J Chain J, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|K Chain K, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|L Chain L, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|M Chain M, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|N Chain N, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|O Chain O, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|P Chain P, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|Q Chain Q, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|R Chain R, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|S Chain S, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|T Chain T, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|U Chain U, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|V Chain V, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|W Chain W, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|X Chain X, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
Length = 325
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 3/73 (4%)
Query: 24 YAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGLL 83
Y T E ++ + G++LDPVY+GKA YG++ D+A+ K G K+LF+HTGG+
Sbjct: 256 YGKITGEVAQIIRKVGTREGIILDPVYTGKAFYGLV-DLAR--KGELGEKILFIHTGGIS 312
Query: 84 GLFDKVDQMAPLL 96
G F D++ LL
Sbjct: 313 GTFHYGDKLLSLL 325
>pdb|4D8T|A Chain A, Crystal Structure Of D-Cysteine Desulfhydrase From
Salmonella Typhimurium At 2.2 A Resolution
pdb|4D8T|B Chain B, Crystal Structure Of D-Cysteine Desulfhydrase From
Salmonella Typhimurium At 2.2 A Resolution
pdb|4D8T|C Chain C, Crystal Structure Of D-Cysteine Desulfhydrase From
Salmonella Typhimurium At 2.2 A Resolution
pdb|4D8T|D Chain D, Crystal Structure Of D-Cysteine Desulfhydrase From
Salmonella Typhimurium At 2.2 A Resolution
pdb|4D8U|A Chain A, Crystal Structure Of D-Cysteine Desulfhydrase From
Salmonella Typhimurium At 3.3 A In Monoclinic Space
Group With 8 Subunits In The Asymmetric Unit
pdb|4D8U|B Chain B, Crystal Structure Of D-Cysteine Desulfhydrase From
Salmonella Typhimurium At 3.3 A In Monoclinic Space
Group With 8 Subunits In The Asymmetric Unit
pdb|4D8U|C Chain C, Crystal Structure Of D-Cysteine Desulfhydrase From
Salmonella Typhimurium At 3.3 A In Monoclinic Space
Group With 8 Subunits In The Asymmetric Unit
pdb|4D8U|D Chain D, Crystal Structure Of D-Cysteine Desulfhydrase From
Salmonella Typhimurium At 3.3 A In Monoclinic Space
Group With 8 Subunits In The Asymmetric Unit
pdb|4D8U|E Chain E, Crystal Structure Of D-Cysteine Desulfhydrase From
Salmonella Typhimurium At 3.3 A In Monoclinic Space
Group With 8 Subunits In The Asymmetric Unit
pdb|4D8U|F Chain F, Crystal Structure Of D-Cysteine Desulfhydrase From
Salmonella Typhimurium At 3.3 A In Monoclinic Space
Group With 8 Subunits In The Asymmetric Unit
pdb|4D8U|G Chain G, Crystal Structure Of D-Cysteine Desulfhydrase From
Salmonella Typhimurium At 3.3 A In Monoclinic Space
Group With 8 Subunits In The Asymmetric Unit
pdb|4D8U|H Chain H, Crystal Structure Of D-Cysteine Desulfhydrase From
Salmonella Typhimurium At 3.3 A In Monoclinic Space
Group With 8 Subunits In The Asymmetric Unit
pdb|4D8W|A Chain A, Salmonella Typhimurium D-Cysteine Desulfhydrase Soaked
With D-Cys Shows Pyruvate Bound 4 A Away From Active
Site
pdb|4D8W|B Chain B, Salmonella Typhimurium D-Cysteine Desulfhydrase Soaked
With D-Cys Shows Pyruvate Bound 4 A Away From Active
Site
pdb|4D8W|C Chain C, Salmonella Typhimurium D-Cysteine Desulfhydrase Soaked
With D-Cys Shows Pyruvate Bound 4 A Away From Active
Site
pdb|4D8W|D Chain D, Salmonella Typhimurium D-Cysteine Desulfhydrase Soaked
With D-Cys Shows Pyruvate Bound 4 A Away From Active
Site
pdb|4D92|A Chain A, Salmonella Typhimurium D-Cysteine Desulfhydrase Soaked
With Beta- Chloro-D-Alanine Shows Pyruvate Bound 4 A
Away From Active Site
pdb|4D92|B Chain B, Salmonella Typhimurium D-Cysteine Desulfhydrase Soaked
With Beta- Chloro-D-Alanine Shows Pyruvate Bound 4 A
Away From Active Site
pdb|4D92|C Chain C, Salmonella Typhimurium D-Cysteine Desulfhydrase Soaked
With Beta- Chloro-D-Alanine Shows Pyruvate Bound 4 A
Away From Active Site
pdb|4D92|D Chain D, Salmonella Typhimurium D-Cysteine Desulfhydrase Soaked
With Beta- Chloro-D-Alanine Shows Pyruvate Bound 4 A
Away From Active Site
pdb|4D99|A Chain A, Salmonella Typhimurium D-Cysteine Desulfhydrase With L-Ser
Bound Non- Covalently At The Active Site
pdb|4D99|B Chain B, Salmonella Typhimurium D-Cysteine Desulfhydrase With L-Ser
Bound Non- Covalently At The Active Site
pdb|4D99|C Chain C, Salmonella Typhimurium D-Cysteine Desulfhydrase With L-Ser
Bound Non- Covalently At The Active Site
pdb|4D99|D Chain D, Salmonella Typhimurium D-Cysteine Desulfhydrase With L-Ser
Bound Non- Covalently At The Active Site
Length = 342
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 23 GYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGL 82
GY + + VK +A+ GV+LDPVY+GKA G+++ ++Q +G +LF+HTGG
Sbjct: 274 GYGVPNDAGMEAVKLLASLEGVLLDPVYTGKAMAGLIDGISQKRFNDDG-PILFIHTGGA 332
Query: 83 LGLF 86
LF
Sbjct: 333 PALF 336
>pdb|4D96|A Chain A, D-Cysteine Desulfhydrase From Salmonella Typhimurium
Complexed With 1- Amino-1-Carboxycyclopropane (Acc)
pdb|4D96|B Chain B, D-Cysteine Desulfhydrase From Salmonella Typhimurium
Complexed With 1- Amino-1-Carboxycyclopropane (Acc)
pdb|4D96|C Chain C, D-Cysteine Desulfhydrase From Salmonella Typhimurium
Complexed With 1- Amino-1-Carboxycyclopropane (Acc)
pdb|4D96|D Chain D, D-Cysteine Desulfhydrase From Salmonella Typhimurium
Complexed With 1- Amino-1-Carboxycyclopropane (Acc)
pdb|4D9B|A Chain A, Pyridoxamine 5' Phosphate (Pmp) Bound Form Of Salmonella
Typhimurium D-Cysteine Desulfhydrase Obtained After
Co-Crystallization With D- Cycloserine
pdb|4D9B|B Chain B, Pyridoxamine 5' Phosphate (Pmp) Bound Form Of Salmonella
Typhimurium D-Cysteine Desulfhydrase Obtained After
Co-Crystallization With D- Cycloserine
pdb|4D9B|C Chain C, Pyridoxamine 5' Phosphate (Pmp) Bound Form Of Salmonella
Typhimurium D-Cysteine Desulfhydrase Obtained After
Co-Crystallization With D- Cycloserine
pdb|4D9B|D Chain D, Pyridoxamine 5' Phosphate (Pmp) Bound Form Of Salmonella
Typhimurium D-Cysteine Desulfhydrase Obtained After
Co-Crystallization With D- Cycloserine
pdb|4D9C|A Chain A, Pmp Bound Form Of Salmonella Typhimurium D-Cysteine
Desulfhydrase Obtained After Co-Crystallization With
L-Cycloserine
pdb|4D9C|B Chain B, Pmp Bound Form Of Salmonella Typhimurium D-Cysteine
Desulfhydrase Obtained After Co-Crystallization With
L-Cycloserine
pdb|4D9C|C Chain C, Pmp Bound Form Of Salmonella Typhimurium D-Cysteine
Desulfhydrase Obtained After Co-Crystallization With
L-Cycloserine
pdb|4D9C|D Chain D, Pmp Bound Form Of Salmonella Typhimurium D-Cysteine
Desulfhydrase Obtained After Co-Crystallization With
L-Cycloserine
pdb|4D9E|A Chain A, D-Cysteine Desulfhydrase From Salmonella Typhimurium
Complexed With L- Cycloserine (Lcs)
pdb|4D9E|B Chain B, D-Cysteine Desulfhydrase From Salmonella Typhimurium
Complexed With L- Cycloserine (Lcs)
pdb|4D9E|C Chain C, D-Cysteine Desulfhydrase From Salmonella Typhimurium
Complexed With L- Cycloserine (Lcs)
pdb|4D9E|D Chain D, D-Cysteine Desulfhydrase From Salmonella Typhimurium
Complexed With L- Cycloserine (Lcs)
pdb|4D9F|A Chain A, D-Cysteine Desulfhydrase From Salmonella Typhimurium
Complexed With D- Cycloserine (Dcs)
pdb|4D9F|B Chain B, D-Cysteine Desulfhydrase From Salmonella Typhimurium
Complexed With D- Cycloserine (Dcs)
pdb|4D9F|C Chain C, D-Cysteine Desulfhydrase From Salmonella Typhimurium
Complexed With D- Cycloserine (Dcs)
pdb|4D9F|D Chain D, D-Cysteine Desulfhydrase From Salmonella Typhimurium
Complexed With D- Cycloserine (Dcs)
Length = 342
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 23 GYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGL 82
GY + + VK +A+ GV+LDPVY+GKA G+++ ++Q +G +LF+HTGG
Sbjct: 274 GYGVPNDAGMEAVKLLASLEGVLLDPVYTGKAMAGLIDGISQKRFNDDG-PILFIHTGGA 332
Query: 83 LGLF 86
LF
Sbjct: 333 PALF 336
>pdb|4D97|A Chain A, Salmonella Typhimurium D-Cysteine Desulfhydrase With D-Ser
Bound At Active Site
pdb|4D97|B Chain B, Salmonella Typhimurium D-Cysteine Desulfhydrase With D-Ser
Bound At Active Site
pdb|4D97|C Chain C, Salmonella Typhimurium D-Cysteine Desulfhydrase With D-Ser
Bound At Active Site
pdb|4D97|D Chain D, Salmonella Typhimurium D-Cysteine Desulfhydrase With D-Ser
Bound At Active Site
Length = 346
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 23 GYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGL 82
GY + + VK +A+ GV+LDPVY+GKA G+++ ++Q +G +LF+HTGG
Sbjct: 274 GYGVPNDAGMEAVKLLASLEGVLLDPVYTGKAMAGLIDGISQKRFNDDG-PILFIHTGGA 332
Query: 83 LGLF 86
LF
Sbjct: 333 PALF 336
>pdb|1RQX|A Chain A, Crystal Structure Of Acc Deaminase Complexed With
Inhibitor
pdb|1RQX|B Chain B, Crystal Structure Of Acc Deaminase Complexed With
Inhibitor
pdb|1RQX|C Chain C, Crystal Structure Of Acc Deaminase Complexed With
Inhibitor
pdb|1RQX|D Chain D, Crystal Structure Of Acc Deaminase Complexed With
Inhibitor
pdb|1TYZ|A Chain A, Crystal Structure Of 1-aminocyclopropane-1-carboyxlate
Deaminase From Pseudomonas
pdb|1TYZ|B Chain B, Crystal Structure Of 1-aminocyclopropane-1-carboyxlate
Deaminase From Pseudomonas
pdb|1TYZ|C Chain C, Crystal Structure Of 1-aminocyclopropane-1-carboyxlate
Deaminase From Pseudomonas
pdb|1TYZ|D Chain D, Crystal Structure Of 1-aminocyclopropane-1-carboyxlate
Deaminase From Pseudomonas
pdb|1TZ2|A Chain A, Crystal Structure Of 1-Aminocyclopropane-1-Carboyxlate
Deaminase Complexed With Acc
pdb|1TZ2|B Chain B, Crystal Structure Of 1-Aminocyclopropane-1-Carboyxlate
Deaminase Complexed With Acc
pdb|1TZ2|C Chain C, Crystal Structure Of 1-Aminocyclopropane-1-Carboyxlate
Deaminase Complexed With Acc
pdb|1TZ2|D Chain D, Crystal Structure Of 1-Aminocyclopropane-1-Carboyxlate
Deaminase Complexed With Acc
pdb|1TZJ|A Chain A, Crystal Structure Of 1-Aminocyclopropane-1-Carboxylate
Deaminase Complexed With D-Vinyl Glycine
pdb|1TZJ|B Chain B, Crystal Structure Of 1-Aminocyclopropane-1-Carboxylate
Deaminase Complexed With D-Vinyl Glycine
pdb|1TZJ|C Chain C, Crystal Structure Of 1-Aminocyclopropane-1-Carboxylate
Deaminase Complexed With D-Vinyl Glycine
pdb|1TZJ|D Chain D, Crystal Structure Of 1-Aminocyclopropane-1-Carboxylate
Deaminase Complexed With D-Vinyl Glycine
pdb|1TZK|A Chain A, Crystal Structure Of
1-Aminocyclopropane-1-Carboxylate-Deaminase Complexed
With Alpha-Keto-Butyrate
pdb|1TZK|B Chain B, Crystal Structure Of
1-Aminocyclopropane-1-Carboxylate-Deaminase Complexed
With Alpha-Keto-Butyrate
pdb|1TZK|C Chain C, Crystal Structure Of
1-Aminocyclopropane-1-Carboxylate-Deaminase Complexed
With Alpha-Keto-Butyrate
pdb|1TZK|D Chain D, Crystal Structure Of
1-Aminocyclopropane-1-Carboxylate-Deaminase Complexed
With Alpha-Keto-Butyrate
pdb|1TZM|A Chain A, Crystal Structure Of Acc Deaminase Complexed With
Substrate Analog B- Chloro-d-alanine
pdb|1TZM|B Chain B, Crystal Structure Of Acc Deaminase Complexed With
Substrate Analog B- Chloro-d-alanine
pdb|1TZM|C Chain C, Crystal Structure Of Acc Deaminase Complexed With
Substrate Analog B- Chloro-d-alanine
pdb|1TZM|D Chain D, Crystal Structure Of Acc Deaminase Complexed With
Substrate Analog B- Chloro-d-alanine
Length = 338
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 24 YAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGLL 83
Y + L ++ A G++ DPVY GK+ +GM+ +M +N + EG +VL+ H GG+
Sbjct: 268 YGLPNEGTLEAIRLCARTEGMLTDPVYEGKSMHGMI-EMVRNGEFPEGSRVLYAHLGGVP 326
Query: 84 GL 85
L
Sbjct: 327 AL 328
>pdb|1F2D|A Chain A, 1-Aminocyclopropane-1-Carboxylate Deaminase
pdb|1F2D|B Chain B, 1-Aminocyclopropane-1-Carboxylate Deaminase
pdb|1F2D|C Chain C, 1-Aminocyclopropane-1-Carboxylate Deaminase
pdb|1F2D|D Chain D, 1-Aminocyclopropane-1-Carboxylate Deaminase
Length = 341
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 24 YAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGLL 83
Y + + ++ A GV+ DPVY GK+ G++ + ++ K G VL+VH GG
Sbjct: 269 YGVPNEGTIEAIRTCAEQEGVLTDPVYEGKSMQGLIALIKEDYFK-PGANVLYVHLGGAP 327
Query: 84 GL 85
L
Sbjct: 328 AL 329
>pdb|1J0C|A Chain A, Acc Deaminase Mutated To Catalytic Residue
pdb|1J0C|B Chain B, Acc Deaminase Mutated To Catalytic Residue
pdb|1J0C|C Chain C, Acc Deaminase Mutated To Catalytic Residue
pdb|1J0C|D Chain D, Acc Deaminase Mutated To Catalytic Residue
pdb|1J0D|A Chain A, Acc Deaminase Mutant Complexed With Acc
pdb|1J0D|B Chain B, Acc Deaminase Mutant Complexed With Acc
pdb|1J0D|C Chain C, Acc Deaminase Mutant Complexed With Acc
pdb|1J0D|D Chain D, Acc Deaminase Mutant Complexed With Acc
Length = 341
Score = 35.8 bits (81), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 24 YAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGLL 83
Y + + ++ A GV+ DPVY GK+ G++ + ++ K G VL+VH GG
Sbjct: 269 YGVPNEGTIEAIRTCAEQEGVLTDPVYEGKSMQGLIALIKEDYFK-PGANVLYVHLGGAP 327
Query: 84 GL 85
L
Sbjct: 328 AL 329
>pdb|1J0E|A Chain A, Acc Deaminase Mutant Reacton Intermediate
pdb|1J0E|B Chain B, Acc Deaminase Mutant Reacton Intermediate
pdb|1J0E|C Chain C, Acc Deaminase Mutant Reacton Intermediate
pdb|1J0E|D Chain D, Acc Deaminase Mutant Reacton Intermediate
Length = 341
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 24 YAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGLL 83
Y + + ++ A GV+ DPV+ GK+ G++ + ++ K G VL+VH GG
Sbjct: 269 YGVPNEGTIEAIRTCAEQEGVLTDPVFEGKSMQGLIALIKEDYFK-PGANVLYVHLGGAP 327
Query: 84 GL 85
L
Sbjct: 328 AL 329
>pdb|4A18|U Chain U, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 26s Rrna And
Proteins Of Molecule 1
pdb|4A1B|U Chain U, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 26s Rrna And
Proteins Of Molecule 3.
pdb|4A1D|U Chain U, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 26s Rrna And
Proteins Of Molecule 4.
pdb|4A19|U Chain U, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 26s Rrna And
Proteins Of Molecule 2
Length = 206
Score = 29.6 bits (65), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 29 SEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMA 63
S ELN + +A + +VL P + GKA G++ND A
Sbjct: 106 SLELNKKRLLAYVSKLVLFPRHQGKAKKGLVNDTA 140
>pdb|2AW5|A Chain A, Crystal Structure Of A Human Malic Enzyme
pdb|2AW5|B Chain B, Crystal Structure Of A Human Malic Enzyme
pdb|2AW5|C Chain C, Crystal Structure Of A Human Malic Enzyme
Length = 575
Score = 28.5 bits (62), Expect = 0.97, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 10 YLMTRQPRLSKGLGYAINTSEELN 33
YL+TR P L+K L + + ++LN
Sbjct: 27 YLLTRNPHLNKDLAFTLEERQQLN 50
>pdb|1L9M|A Chain A, Three-Dimensional Structure Of The Human Transglutaminase
3 Enzyme: Binding Of Calcium Ions Change Structure For
Activation
pdb|1L9M|B Chain B, Three-Dimensional Structure Of The Human Transglutaminase
3 Enzyme: Binding Of Calcium Ions Change Structure For
Activation
pdb|1L9N|A Chain A, Three-Dimensional Structure Of The Human Transglutaminase
3 Enzyme: Binding Of Calcium Ions Change Structure For
Activation
pdb|1L9N|B Chain B, Three-Dimensional Structure Of The Human Transglutaminase
3 Enzyme: Binding Of Calcium Ions Change Structure For
Activation
pdb|1NUD|A Chain A, Role Of Calcium Ions In The Activation And Activity Of The
Transglutaminase 3 Enzyme (3 Calciums, Active Form)
pdb|1NUD|B Chain B, Role Of Calcium Ions In The Activation And Activity Of The
Transglutaminase 3 Enzyme (3 Calciums, Active Form)
pdb|1NUF|A Chain A, Role Of Calcium Ions In The Activation And Activity Of The
Transglutaminase 3 Enzyme
pdb|1NUG|A Chain A, Role Of Calcium Ions In The Activation And Activity Of The
Transglutaminase 3 Enzyme (2 Calciums, 1 Mg, Inactive
Form)
pdb|1NUG|B Chain B, Role Of Calcium Ions In The Activation And Activity Of The
Transglutaminase 3 Enzyme (2 Calciums, 1 Mg, Inactive
Form)
Length = 692
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 28/73 (38%), Gaps = 10/73 (13%)
Query: 32 LNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQN---PKKWEGRKVLFVHTGGLLGLFDK 88
LNF +D A DP Y G+ M+N N W G +TGG
Sbjct: 196 LNFRRDAATDVASRNDPKYVGRVLSAMINSNDDNGVLAGNWSG-----TYTGGRDP--RS 248
Query: 89 VDQMAPLLKNWSR 101
D +LKNW +
Sbjct: 249 WDGSVEILKNWKK 261
>pdb|2ZSK|A Chain A, Crystal Structure Of Ph1733, An Aspartate Racemase
Homologue, From Pyrococcus Horikoshii Ot3
pdb|2ZSK|B Chain B, Crystal Structure Of Ph1733, An Aspartate Racemase
Homologue, From Pyrococcus Horikoshii Ot3
Length = 226
Score = 26.2 bits (56), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 59 LNDMAQNPKKWEGRKVLFVHTGGLL 83
+ QNP+ WEGRK + ++ L
Sbjct: 45 FKEFFQNPEGWEGRKKILINAAKAL 69
>pdb|2M0O|A Chain A, The Solution Structure Of Human Phf1 In Complex With
H3k36me3
Length = 79
Score = 25.8 bits (55), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 65 NPKKWEGRKVLFVHTGGL--LGLFDKVD 90
P+ WEG+ VL T GL LG KVD
Sbjct: 24 RPRLWEGQDVLARWTDGLLYLGTIKKVD 51
>pdb|2E5P|A Chain A, Solution Structure Of The Tudor Domain Of Phd Finger
Protein 1 (Phf1 Protein)
Length = 68
Score = 25.8 bits (55), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 63 AQNPKKWEGRKVLFVHTGGL--LGLFDKVD 90
+ P+ WEG+ VL T GL LG KVD
Sbjct: 5 SSGPRLWEGQDVLARWTDGLLYLGTIKKVD 34
>pdb|1HUS|A Chain A, Ribosomal Protein S7
Length = 155
Score = 25.4 bits (54), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 22/38 (57%)
Query: 40 AATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFV 77
A V+ DP+Y+ K ++N + + KK + +K+L+
Sbjct: 7 AKRDVLPDPIYNSKLVTRLINKIXIDGKKSKAQKILYT 44
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,776,266
Number of Sequences: 62578
Number of extensions: 144740
Number of successful extensions: 374
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 357
Number of HSP's gapped (non-prelim): 17
length of query: 118
length of database: 14,973,337
effective HSP length: 81
effective length of query: 37
effective length of database: 9,904,519
effective search space: 366467203
effective search space used: 366467203
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)