Query 039995
Match_columns 118
No_of_seqs 132 out of 686
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 04:04:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039995.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039995hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2515 Acd 1-aminocyclopropan 99.9 9.8E-24 2.1E-28 174.1 6.2 77 14-91 246-322 (323)
2 PRK14045 1-aminocyclopropane-1 99.8 1.6E-19 3.5E-24 146.7 8.0 74 16-92 252-325 (329)
3 PRK12390 1-aminocyclopropane-1 99.8 2.1E-19 4.6E-24 146.0 7.2 77 15-92 259-335 (337)
4 TIGR01274 ACC_deam 1-aminocycl 99.8 5.5E-19 1.2E-23 143.8 7.8 79 14-93 257-335 (337)
5 PRK03910 D-cysteine desulfhydr 99.5 2.7E-14 5.9E-19 115.9 7.4 80 13-93 251-330 (331)
6 cd06449 ACCD Aminocyclopropane 99.5 3.2E-14 7E-19 114.1 7.3 69 12-81 239-307 (307)
7 TIGR01275 ACC_deam_rel pyridox 99.5 2.7E-14 5.9E-19 114.3 6.8 79 11-91 232-310 (311)
8 PRK06381 threonine synthase; V 99.1 1.8E-10 4E-15 92.7 6.0 68 12-83 252-319 (319)
9 cd01562 Thr-dehyd Threonine de 98.9 2.2E-09 4.7E-14 85.0 4.8 66 12-82 237-302 (304)
10 PRK08329 threonine synthase; V 98.9 4.2E-09 9.1E-14 86.6 6.1 68 12-82 276-343 (347)
11 PF00291 PALP: Pyridoxal-phosp 98.7 1.1E-08 2.3E-13 80.2 3.9 68 11-80 237-306 (306)
12 cd01563 Thr-synth_1 Threonine 98.7 3.2E-08 6.9E-13 79.6 5.8 69 12-82 253-321 (324)
13 PRK07591 threonine synthase; V 98.7 3.5E-08 7.6E-13 83.4 5.7 73 11-85 321-394 (421)
14 PRK07048 serine/threonine dehy 98.6 3.9E-08 8.5E-13 79.5 5.2 73 13-90 245-317 (321)
15 TIGR00260 thrC threonine synth 98.6 7.6E-08 1.6E-12 77.6 6.5 70 11-82 254-323 (328)
16 PRK06260 threonine synthase; V 98.5 1.5E-07 3.3E-12 78.6 6.2 70 12-83 299-368 (397)
17 PRK06721 threonine synthase; R 98.5 1.6E-07 3.5E-12 77.4 6.2 67 16-84 253-319 (352)
18 PRK08197 threonine synthase; V 98.5 2E-07 4.4E-12 77.8 5.7 70 12-83 312-381 (394)
19 cd06446 Trp-synth_B Tryptophan 98.5 3.3E-07 7.2E-12 75.9 6.7 64 15-82 295-359 (365)
20 PRK06352 threonine synthase; V 98.4 5.2E-07 1.1E-11 74.5 6.4 67 14-82 251-317 (351)
21 cd00640 Trp-synth-beta_II Tryp 98.4 5.8E-07 1.2E-11 69.3 5.9 56 22-81 189-244 (244)
22 PRK09224 threonine dehydratase 98.4 4.7E-07 1E-11 78.4 5.9 70 11-83 240-309 (504)
23 PRK06815 hypothetical protein; 98.4 3.7E-07 8E-12 74.0 4.7 67 13-84 242-308 (317)
24 PRK07409 threonine synthase; V 98.3 1.4E-06 3E-11 71.6 6.0 67 14-82 255-322 (353)
25 PRK12391 tryptophan synthase s 98.3 2E-06 4.3E-11 73.5 6.7 68 22-90 355-423 (427)
26 TIGR01124 ilvA_2Cterm threonin 98.2 2.2E-06 4.8E-11 74.4 5.5 70 11-83 237-306 (499)
27 PLN02550 threonine dehydratase 98.1 4E-06 8.7E-11 74.6 5.9 71 11-84 329-399 (591)
28 TIGR01415 trpB_rel pyridoxal-p 98.1 9.4E-06 2E-10 69.2 6.7 64 23-88 347-412 (419)
29 PRK05638 threonine synthase; V 98.1 9.7E-06 2.1E-10 68.8 6.7 67 13-82 289-355 (442)
30 cd01561 CBS_like CBS_like: Thi 98.0 1.7E-05 3.6E-10 63.2 6.0 61 18-82 226-286 (291)
31 PRK08639 threonine dehydratase 98.0 1.8E-05 3.9E-10 66.8 6.5 69 12-85 251-319 (420)
32 PRK12483 threonine dehydratase 98.0 1.5E-05 3.3E-10 69.9 6.0 71 11-84 257-327 (521)
33 PRK06382 threonine dehydratase 97.8 5E-05 1.1E-09 63.8 5.7 69 11-84 244-312 (406)
34 TIGR01137 cysta_beta cystathio 97.7 9.4E-05 2E-09 61.9 6.4 60 20-82 243-302 (454)
35 PRK08198 threonine dehydratase 97.7 5.6E-05 1.2E-09 63.0 4.9 70 11-85 241-310 (404)
36 PRK10717 cysteine synthase A; 97.6 0.00012 2.6E-09 59.6 5.8 59 20-82 250-308 (330)
37 TIGR01127 ilvA_1Cterm threonin 97.6 0.00011 2.5E-09 60.6 5.5 67 12-83 220-286 (380)
38 PRK06110 hypothetical protein; 97.6 0.00014 3.1E-09 59.1 5.5 69 12-85 241-309 (322)
39 PRK07476 eutB threonine dehydr 97.5 0.00016 3.5E-09 58.8 5.4 66 13-84 242-308 (322)
40 TIGR01139 cysK cysteine syntha 97.5 0.00026 5.6E-09 56.6 6.3 57 22-82 233-289 (298)
41 TIGR01136 cysKM cysteine synth 97.4 0.00038 8.2E-09 55.8 5.7 62 18-82 229-290 (299)
42 TIGR03844 cysteate_syn cysteat 97.2 0.00075 1.6E-08 57.2 6.0 70 11-82 310-379 (398)
43 PRK08526 threonine dehydratase 97.2 0.00079 1.7E-08 57.0 5.5 61 20-84 248-308 (403)
44 PLN02569 threonine synthase 96.7 0.0039 8.4E-08 54.4 6.1 65 15-82 374-438 (484)
45 cd06448 L-Ser-dehyd Serine deh 96.6 0.0057 1.2E-07 49.9 5.9 70 13-83 230-303 (316)
46 PRK08246 threonine dehydratase 96.4 0.0063 1.4E-07 49.4 5.0 69 11-83 236-304 (310)
47 COG0498 ThrC Threonine synthas 96.4 0.0093 2E-07 51.4 6.3 60 20-82 313-372 (411)
48 PLN02970 serine racemase 96.1 0.01 2.2E-07 48.6 5.1 68 16-84 250-318 (328)
49 TIGR02991 ectoine_eutB ectoine 95.9 0.017 3.8E-07 47.1 5.5 68 11-84 240-307 (317)
50 PRK02991 D-serine dehydratase; 95.4 0.022 4.8E-07 49.2 4.3 70 12-83 346-424 (441)
51 TIGR02079 THD1 threonine dehyd 95.1 0.054 1.2E-06 45.9 5.9 60 20-84 248-307 (409)
52 PRK08638 threonine dehydratase 94.9 0.065 1.4E-06 44.2 5.6 67 17-86 252-318 (333)
53 PRK08206 diaminopropionate amm 94.8 0.059 1.3E-06 45.6 5.3 71 13-84 303-385 (399)
54 PLN02556 cysteine synthase/L-3 94.6 0.082 1.8E-06 44.5 5.5 62 18-82 282-343 (368)
55 TIGR01747 diampropi_NH3ly diam 94.3 0.099 2.2E-06 44.1 5.5 73 11-84 282-366 (376)
56 PRK07334 threonine dehydratase 94.2 0.087 1.9E-06 44.3 4.9 66 12-82 241-306 (403)
57 PRK08813 threonine dehydratase 94.0 0.095 2.1E-06 44.0 4.8 65 12-85 248-312 (349)
58 PRK06608 threonine dehydratase 93.3 0.22 4.7E-06 41.2 5.6 59 21-83 252-310 (338)
59 TIGR00263 trpB tryptophan synt 93.2 0.28 6.1E-06 41.3 6.3 58 22-83 318-376 (385)
60 PRK09225 threonine synthase; V 93.2 0.19 4.1E-06 43.8 5.4 53 22-81 358-410 (462)
61 TIGR02035 D_Ser_am_lyase D-ser 93.1 0.24 5.1E-06 42.8 5.8 68 14-83 343-421 (431)
62 PLN00011 cysteine synthase 92.9 0.31 6.6E-06 39.8 5.9 55 24-81 246-300 (323)
63 PRK06450 threonine synthase; V 91.4 0.39 8.4E-06 39.8 4.9 59 12-81 275-333 (338)
64 TIGR03528 2_3_DAP_am_ly diamin 91.3 0.43 9.4E-06 40.5 5.2 72 12-84 302-385 (396)
65 PLN02565 cysteine synthase 90.7 0.74 1.6E-05 37.8 5.9 57 23-82 243-299 (322)
66 PRK13028 tryptophan synthase s 89.9 0.83 1.8E-05 39.2 5.7 56 24-83 332-388 (402)
67 cd01560 Thr-synth_2 Threonine 89.7 0.61 1.3E-05 40.6 4.9 55 21-81 360-414 (460)
68 PLN02356 phosphateglycerate ki 89.0 0.86 1.9E-05 39.5 5.2 59 20-82 335-393 (423)
69 PRK11761 cysM cysteine synthas 88.1 1.7 3.7E-05 35.1 6.1 56 22-82 230-285 (296)
70 cd06447 D-Ser-dehyd D-Serine d 87.1 1.9 4.1E-05 37.0 6.1 68 13-82 324-400 (404)
71 PRK04346 tryptophan synthase s 86.8 1.6 3.4E-05 37.4 5.5 56 24-83 328-384 (397)
72 PRK13803 bifunctional phosphor 85.6 1.9 4.1E-05 38.7 5.5 58 22-83 538-596 (610)
73 PLN02618 tryptophan synthase, 84.6 2.6 5.6E-05 36.3 5.8 54 24-81 341-394 (410)
74 TIGR01138 cysM cysteine syntha 83.2 4 8.7E-05 32.8 6.0 54 23-81 227-280 (290)
75 PLN03013 cysteine synthase 81.4 3.5 7.6E-05 35.9 5.3 57 19-78 347-403 (429)
76 COG1171 IlvA Threonine dehydra 80.9 4.2 9.2E-05 34.7 5.6 70 12-85 248-317 (347)
77 PF01861 DUF43: Protein of unk 79.4 5.1 0.00011 32.7 5.4 52 27-79 75-150 (243)
78 COG1350 Predicted alternative 79.4 6.9 0.00015 34.1 6.4 65 27-92 361-426 (432)
79 PRK13802 bifunctional indole-3 77.7 7.8 0.00017 35.8 6.6 57 24-81 604-661 (695)
80 COG0031 CysK Cysteine synthase 76.5 7 0.00015 32.7 5.5 53 21-77 237-289 (300)
81 PF01471 PG_binding_1: Putativ 68.0 9.7 0.00021 22.9 3.4 35 24-58 23-57 (57)
82 PF08541 ACP_syn_III_C: 3-Oxoa 61.3 42 0.00091 21.7 6.0 48 33-81 22-79 (90)
83 PRK02308 uvsE putative UV dama 57.6 38 0.00081 27.9 6.1 61 23-83 84-158 (303)
84 TIGR00629 uvde UV damage endon 57.2 29 0.00064 29.1 5.5 73 27-101 91-181 (312)
85 KOG1251 Serine racemase [Signa 57.2 21 0.00047 30.1 4.6 68 13-85 246-313 (323)
86 cd01469 vWA_integrins_alpha_su 51.7 37 0.00081 24.8 4.7 52 28-83 62-115 (177)
87 TIGR00334 5S_RNA_mat_M5 ribonu 49.9 23 0.0005 27.6 3.5 71 21-98 28-107 (174)
88 COG1568 Predicted methyltransf 48.7 27 0.00058 30.0 3.9 34 27-60 183-241 (354)
89 PF12967 DUF3855: Domain of Un 47.5 18 0.00038 27.4 2.4 27 25-51 15-41 (158)
90 PTZ00424 helicase 45; Provisio 45.6 45 0.00097 27.1 4.7 39 22-60 46-85 (401)
91 PRK08360 4-aminobutyrate amino 43.1 71 0.0015 27.3 5.8 57 23-81 54-111 (443)
92 TIGR00508 bioA adenosylmethion 42.9 76 0.0016 26.9 5.8 57 23-81 58-115 (427)
93 PF00308 Bac_DnaA: Bacterial d 42.9 85 0.0018 24.1 5.7 51 25-78 13-71 (219)
94 cd01473 vWA_CTRP CTRP for CS 40.6 1.2E+02 0.0026 22.8 6.1 54 29-83 66-120 (192)
95 cd06808 PLPDE_III Type III Pyr 40.4 52 0.0011 24.0 4.0 60 22-86 120-194 (211)
96 PRK10569 NAD(P)H-dependent FMN 39.4 40 0.00087 25.7 3.4 68 28-97 54-126 (191)
97 PRK01060 endonuclease IV; Prov 37.9 1.1E+02 0.0025 23.5 5.8 54 27-82 44-113 (281)
98 PRK09352 3-oxoacyl-(acyl carri 36.4 1.3E+02 0.0027 23.7 5.9 48 33-81 250-307 (319)
99 PRK06840 hypothetical protein; 34.3 1.3E+02 0.0028 24.1 5.7 50 32-82 267-325 (339)
100 PRK06943 adenosylmethionine--8 34.1 1.2E+02 0.0027 26.0 5.8 57 23-81 67-124 (453)
101 PF09863 DUF2090: Uncharacteri 33.7 40 0.00087 28.6 2.7 62 31-105 69-143 (311)
102 PRK05963 3-oxoacyl-(acyl carri 32.8 1.5E+02 0.0032 23.5 5.8 50 32-82 257-316 (326)
103 PRK08593 4-aminobutyrate amino 32.7 1.3E+02 0.0029 25.6 5.8 57 23-81 55-113 (445)
104 COG3048 DsdA D-serine dehydrat 32.7 46 0.00099 29.1 2.9 36 11-50 352-387 (443)
105 PF03460 NIR_SIR_ferr: Nitrite 31.2 48 0.001 20.6 2.2 19 25-43 19-37 (69)
106 PRK07204 3-oxoacyl-(acyl carri 31.2 1.7E+02 0.0037 23.2 5.9 48 34-82 262-319 (329)
107 TIGR01090 apt adenine phosphor 31.2 58 0.0013 24.0 3.0 24 43-66 112-136 (169)
108 COG4990 Uncharacterized protei 31.0 78 0.0017 25.2 3.8 49 21-80 94-142 (195)
109 KOG1401 Acetylornithine aminot 30.8 1.7E+02 0.0037 26.0 6.2 60 21-81 67-126 (433)
110 PRK09258 3-oxoacyl-(acyl carri 30.3 1.6E+02 0.0035 23.4 5.7 50 31-81 268-327 (338)
111 TIGR00747 fabH 3-oxoacyl-(acyl 29.7 1.9E+02 0.004 22.8 5.8 49 31-80 248-306 (318)
112 TIGR02869 spore_SleB spore cor 29.7 94 0.002 24.1 4.0 34 25-58 35-68 (201)
113 PRK05769 4-aminobutyrate amino 29.4 1.7E+02 0.0037 24.9 5.9 57 23-81 67-125 (441)
114 COG2240 PdxK Pyridoxal/pyridox 29.2 1.2E+02 0.0026 25.3 4.8 58 21-83 42-120 (281)
115 PRK07738 flagellar protein Fla 29.1 58 0.0013 23.7 2.6 22 26-47 93-114 (117)
116 PHA02558 uvsW UvsW helicase; P 29.0 88 0.0019 27.1 4.2 36 23-58 111-147 (501)
117 PRK06917 hypothetical protein; 28.9 1.8E+02 0.004 24.8 6.0 56 24-81 45-101 (447)
118 PF14681 UPRTase: Uracil phosp 28.9 53 0.0012 25.3 2.6 56 41-104 122-178 (207)
119 PRK06082 4-aminobutyrate amino 28.8 1.4E+02 0.003 25.7 5.3 55 24-81 85-140 (459)
120 PF03646 FlaG: FlaG protein; 28.7 22 0.00047 24.4 0.3 22 26-47 84-105 (107)
121 PRK12879 3-oxoacyl-(acyl carri 28.7 2E+02 0.0044 22.6 5.9 48 33-81 256-313 (325)
122 cd01732 LSm5 The eukaryotic Sm 28.2 43 0.00094 22.2 1.7 12 70-81 65-76 (76)
123 PRK00129 upp uracil phosphorib 27.7 1.2E+02 0.0026 23.3 4.3 55 40-104 124-179 (209)
124 PF01878 EVE: EVE domain; Int 27.5 50 0.0011 23.5 2.1 20 68-87 40-60 (143)
125 PF00710 Asparaginase: Asparag 27.5 36 0.00078 27.9 1.5 13 73-85 1-13 (313)
126 PRK06105 aminotransferase; Pro 27.2 1.9E+02 0.0041 24.8 5.9 20 23-42 61-80 (460)
127 PF05534 HicB: HicB family; I 27.1 75 0.0016 19.5 2.5 22 26-47 23-44 (51)
128 PRK05093 argD bifunctional N-s 27.0 2.1E+02 0.0046 23.5 5.9 55 23-81 53-107 (403)
129 PLN02326 3-oxoacyl-[acyl-carri 26.8 1.9E+02 0.0041 24.0 5.6 51 31-82 309-369 (379)
130 PRK07678 aminotransferase; Val 26.7 2.2E+02 0.0047 24.4 6.1 56 23-81 60-115 (451)
131 PRK06242 flavodoxin; Provision 26.6 87 0.0019 21.9 3.1 50 48-99 52-101 (150)
132 KOG1317 Fumarase [Energy produ 26.4 2E+02 0.0043 25.4 5.8 50 34-87 80-130 (487)
133 PRK00441 argR arginine repress 25.9 39 0.00084 25.2 1.3 40 68-115 86-127 (149)
134 PF14577 SEO_C: Sieve element 25.8 46 0.00099 27.1 1.7 30 24-53 39-72 (235)
135 KOG1395 Tryptophan synthase be 25.4 2.1E+02 0.0045 25.5 5.7 53 24-80 393-445 (477)
136 cd00830 KAS_III Ketoacyl-acyl 25.4 2.7E+02 0.0058 21.7 6.0 48 33-81 254-311 (320)
137 COG3077 RelB DNA-damage-induci 25.2 1.2E+02 0.0026 21.2 3.5 40 23-63 25-67 (88)
138 PRK07986 adenosylmethionine--8 25.1 2.1E+02 0.0046 24.4 5.7 57 23-81 56-113 (428)
139 COG1334 FlaG Uncharacterized f 24.4 69 0.0015 23.6 2.3 22 26-47 96-117 (120)
140 smart00487 DEXDc DEAD-like hel 24.1 1.4E+02 0.0031 20.2 3.8 37 23-59 5-43 (201)
141 PRK08452 flagellar protein Fla 23.9 76 0.0016 23.3 2.5 22 26-47 100-121 (124)
142 TIGR01835 HMG-CoA-S_prok 3-hyd 23.6 1.5E+02 0.0032 24.7 4.4 34 48-81 273-306 (379)
143 PRK08088 4-aminobutyrate amino 23.4 3.1E+02 0.0066 22.9 6.3 59 23-82 54-113 (425)
144 cd00411 Asparaginase Asparagin 23.2 50 0.0011 27.3 1.5 15 72-86 1-15 (323)
145 PRK05964 adenosylmethionine--8 23.2 2.8E+02 0.006 23.2 6.0 57 23-81 55-112 (423)
146 PRK00358 pyrH uridylate kinase 23.1 1.1E+02 0.0024 23.4 3.3 14 71-84 39-52 (231)
147 PRK06777 4-aminobutyrate amino 23.0 80 0.0017 26.6 2.7 31 22-52 211-243 (421)
148 PF11657 Activator-TraM: Trans 22.7 79 0.0017 23.8 2.4 24 28-51 2-28 (144)
149 PRK04612 argD acetylornithine 22.6 2.8E+02 0.006 23.4 5.9 56 23-81 53-108 (408)
150 PRK07539 NADH dehydrogenase su 22.2 2.4E+02 0.0053 20.7 4.9 50 24-82 35-84 (154)
151 PRK07495 4-aminobutyrate amino 22.1 2.6E+02 0.0056 23.7 5.7 57 23-81 53-111 (425)
152 COG0351 ThiD Hydroxymethylpyri 22.0 42 0.00091 27.7 0.9 32 27-58 82-116 (263)
153 PRK06916 adenosylmethionine--8 22.0 3.1E+02 0.0067 23.5 6.2 56 24-81 70-126 (460)
154 PRK04280 arginine repressor; P 21.9 49 0.0011 24.7 1.1 38 70-115 88-127 (148)
155 TIGR00519 asnASE_I L-asparagin 21.4 60 0.0013 27.0 1.7 15 72-86 2-16 (336)
156 PRK06918 4-aminobutyrate amino 21.1 3E+02 0.0065 23.3 5.9 57 23-81 67-125 (451)
157 PTZ00372 endonuclease 4-like p 21.1 3.2E+02 0.0069 23.9 6.1 56 27-84 173-244 (413)
158 smart00518 AP2Ec AP endonuclea 21.1 3.3E+02 0.0072 20.8 5.7 55 26-82 41-108 (273)
159 PRK02362 ski2-like helicase; P 21.0 1.1E+02 0.0024 27.8 3.4 64 11-77 8-73 (737)
160 PF07282 OrfB_Zn_ribbon: Putat 20.6 75 0.0016 19.8 1.7 27 30-56 3-32 (69)
161 TIGR02384 RelB_DinJ addiction 20.4 1.8E+02 0.0039 19.5 3.6 25 27-51 28-52 (83)
162 COG3695 Predicted methylated D 20.4 91 0.002 22.5 2.2 39 9-49 53-91 (103)
163 TIGR00587 nfo apurinic endonuc 20.3 2.2E+02 0.0047 22.5 4.6 54 28-83 44-113 (274)
164 cd00268 DEADc DEAD-box helicas 20.3 83 0.0018 22.8 2.1 55 22-77 17-75 (203)
165 TIGR00700 GABAtrnsam 4-aminobu 20.3 3.5E+02 0.0077 22.5 6.1 56 24-81 47-104 (420)
166 PRK03341 arginine repressor; P 20.1 57 0.0012 25.0 1.2 38 70-115 105-144 (168)
167 PLN02541 uracil phosphoribosyl 20.1 1.8E+02 0.004 23.4 4.2 55 42-104 159-214 (244)
168 PF12651 RHH_3: Ribbon-helix-h 20.0 1.4E+02 0.003 17.7 2.7 21 27-47 9-29 (44)
169 PRK13412 fkp bifunctional fuco 20.0 99 0.0021 30.0 3.0 13 70-82 90-102 (974)
No 1
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=99.89 E-value=9.8e-24 Score=174.06 Aligned_cols=77 Identities=35% Similarity=0.578 Sum_probs=70.4
Q ss_pred hhhccccCCCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCCcccccccHHH
Q 039995 14 RQPRLSKGLGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGLLGLFDKVDQ 91 (118)
Q Consensus 14 ~~l~~~~g~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGGl~glf~~~~~ 91 (118)
-..+||+++|||+|++|..++|++++++|||+||||||||+|+|++++++ ++.++.+++||||||||+||+|+|.+.
T Consensus 246 ~~~~dy~~~~Yg~p~~e~~e~i~~~~~~eGillDpVYtgKam~Glid~~~-k~~f~~~~~vLfiHtGG~~gl~~y~~~ 322 (323)
T COG2515 246 LLSDDYHHPGYGKPNEEDIEAIKLLARLEGILLDPVYTGKAMYGLIDLAR-KGEFPDGSPVLFIHTGGAPGLFAYSPR 322 (323)
T ss_pred EEEecccCCccCCcCHHHHHHHHHHHHhhCcccccccchHHHHHHHHHHh-cccCCCCCceEEEEcCCccchhccccc
Confidence 35679999999999999999999999999999999999999999997544 578989999999999999999998654
No 2
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=99.79 E-value=1.6e-19 Score=146.71 Aligned_cols=74 Identities=35% Similarity=0.599 Sum_probs=64.6
Q ss_pred hccccCCCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCCcccccccHHHh
Q 039995 16 PRLSKGLGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGLLGLFDKVDQM 92 (118)
Q Consensus 16 l~~~~g~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGGl~glf~~~~~~ 92 (118)
+.|++.++||++++|.+++|++++++|||++|||||||+|+++++.+++ +.+ +++||||||||+||+|++.+++
T Consensus 252 ~~d~~~~~y~~~~~e~~~~~~~la~~eGi~ldpvytgk~~~a~~~~~~~-~~~--~~~iv~ihtGG~~g~~~~~~~~ 325 (329)
T PRK14045 252 LYDYSFGEYGKITKEVAKLIRSVGTMEGLILDPVYTGKAFYGLMDLAKK-GEL--GEKILFIHTGGISGTFHYGDKM 325 (329)
T ss_pred ecccccCCCCCCCHHHHHHHHHHHHhhCCCCccchHHHHHHHHHHHHHc-CCC--CCCEEEEECCCcccccchHHHh
Confidence 4455558899999999999999999999999999999999999975544 433 6799999999999999988776
No 3
>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=99.79 E-value=2.1e-19 Score=146.01 Aligned_cols=77 Identities=29% Similarity=0.436 Sum_probs=69.8
Q ss_pred hhccccCCCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCCcccccccHHHh
Q 039995 15 QPRLSKGLGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGLLGLFDKVDQM 92 (118)
Q Consensus 15 ~l~~~~g~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGGl~glf~~~~~~ 92 (118)
...++.+++|++++++.+++++.+++++||++||+||||+|+++.+ +.+++.++++++||||||||+||+|++.+.+
T Consensus 259 ~~~~~~~~~~~vsd~e~~~a~~~la~~~gi~~ep~ysg~~~aa~~~-~~~~g~~~~~~~vv~~htgg~~~~~~~~~~~ 335 (337)
T PRK12390 259 LDERYAGPEYGLPNEGTLEAIRLCARLEGMLTDPVYEGKSMHGMID-LVRKGEFPEGSKVLYAHLGGVPALNAYSFLF 335 (337)
T ss_pred EecccccCCCCCCCHHHHHHHHHHHHhcCccccccHHHHHHHHHHH-HHhcCCCCCCCeEEEEeCCChHhhhcchhhh
Confidence 4457899999999999999999999999999999999999999986 5556788889999999999999999986654
No 4
>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase. This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family.
Probab=99.77 E-value=5.5e-19 Score=143.76 Aligned_cols=79 Identities=28% Similarity=0.353 Sum_probs=70.7
Q ss_pred hhhccccCCCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCCcccccccHHHhh
Q 039995 14 RQPRLSKGLGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGLLGLFDKVDQMA 93 (118)
Q Consensus 14 ~~l~~~~g~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGGl~glf~~~~~~~ 93 (118)
.+..++++++|++++++..++++.++++|||++||+||||+++++++ +.+.+.++++++||||||||+||+|++.+.+.
T Consensus 257 ~~~~~~~~~~~~v~d~e~~~a~~~la~~eGi~~ep~ytg~~~aa~~~-~~~~g~~~~~~~vv~~htGG~~~~~~~~~~~~ 335 (337)
T TIGR01274 257 VLDTRFAYPEYGVPNEGTLEAIRLCAKMEGVLTDPVYEGKSMHGMIE-MIRRGEFKEGSNVLYAHLGGAPALNAYSFLFR 335 (337)
T ss_pred EEeccccCCCcCCCCHHHHHHHHHHHHhcCCccCcchHHHHHHHHHH-HHhcCCCCCCCEEEEEeCCChhhhhhhHHHhh
Confidence 34457899999999999999999999999999999999999999996 55557888899999999999999999876653
No 5
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=99.52 E-value=2.7e-14 Score=115.87 Aligned_cols=80 Identities=40% Similarity=0.624 Sum_probs=70.6
Q ss_pred hhhhccccCCCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCCcccccccHHHh
Q 039995 13 TRQPRLSKGLGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGLLGLFDKVDQM 92 (118)
Q Consensus 13 ~~~l~~~~g~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGGl~glf~~~~~~ 92 (118)
+..++++.+.+|+++++|..++++++++++||++||+|||++++++.+ +.+.+.+.++++||+|||||.+++|++.+++
T Consensus 251 ~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~ep~ysg~~~aa~~~-~~~~~~~~~~~~Vv~i~tGG~~~~~~~~~~~ 329 (331)
T PRK03910 251 IRLWDDYVGPGYGVPTDEMLEAVKLLARTEGILLDPVYTGKAMAGLID-LIRQGRFKKGGNVLFIHTGGAPALFAYADAF 329 (331)
T ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCccccccHHHHHHHHHH-HHHcCCCCCCCeEEEEECCChHhhhhhhhhh
Confidence 456778899999999999999999999999999999999999999986 4444566568899999999999999988776
Q ss_pred h
Q 039995 93 A 93 (118)
Q Consensus 93 ~ 93 (118)
+
T Consensus 330 ~ 330 (331)
T PRK03910 330 A 330 (331)
T ss_pred c
Confidence 4
No 6
>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia.
Probab=99.51 E-value=3.2e-14 Score=114.05 Aligned_cols=69 Identities=35% Similarity=0.540 Sum_probs=61.7
Q ss_pred hhhhhccccCCCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCC
Q 039995 12 MTRQPRLSKGLGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGG 81 (118)
Q Consensus 12 ~~~~l~~~~g~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGG 81 (118)
++....++++.+|+++++|..++++++++++||++||+||||+++++.+ +.+++.++++++||+|||||
T Consensus 239 ~~~~~~~~~~~~~~v~d~e~~~a~~~la~~~Gi~~ep~ytg~~~aa~~~-~~~~~~~~~~~~vv~i~TGG 307 (307)
T cd06449 239 DVVLDDDYAAPEYGIPNDETIEAIKLCARLEGIITDPVYEGKSMQGMID-LVRNGEFKEGSKVLFIHLGG 307 (307)
T ss_pred cEEEecCcccCCCCCCCHHHHHHHHHHHHHhCCccccchHHHHHHHHHH-HHhcCCCCCCCeEEEEeCCC
Confidence 4455668899999999999999999999999999999999999999986 55556677789999999998
No 7
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family. This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).
Probab=99.51 E-value=2.7e-14 Score=114.28 Aligned_cols=79 Identities=38% Similarity=0.656 Sum_probs=68.5
Q ss_pred hhhhhhccccCCCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCCcccccccHH
Q 039995 11 LMTRQPRLSKGLGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGLLGLFDKVD 90 (118)
Q Consensus 11 ~~~~~l~~~~g~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGGl~glf~~~~ 90 (118)
..+..++++++.+|+++++|..++++++++++||++||+||||+++++.+.+.+ +.+ ++++||+|||||.+|+|++.+
T Consensus 232 ~~~~~~~~~~~~~~~v~d~e~~~~~~~la~~~gi~vep~~sg~~~aa~~~~~~~-~~~-~~~~vv~i~tGG~~g~~~~~~ 309 (311)
T TIGR01275 232 EVIPELDDYSGPGYGKPTSEVAEIVKKVASREGIILDPVYTGKAFYGLIDLIRK-GEL-GEKGILFIHTGGISGLFAYGD 309 (311)
T ss_pred CCEEEECCcccCcCCCCCHHHHHHHHHHHHHhCCccCcchHHHHHHHHHHHHHh-CCC-CCCCEEEEECCCccccccccc
Confidence 456777889999999999999999999999999999999999999999874444 444 367999999999999998754
Q ss_pred H
Q 039995 91 Q 91 (118)
Q Consensus 91 ~ 91 (118)
.
T Consensus 310 ~ 310 (311)
T TIGR01275 310 K 310 (311)
T ss_pred c
Confidence 3
No 8
>PRK06381 threonine synthase; Validated
Probab=99.08 E-value=1.8e-10 Score=92.68 Aligned_cols=68 Identities=16% Similarity=0.188 Sum_probs=59.3
Q ss_pred hhhhhccccCCCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCCcc
Q 039995 12 MTRQPRLSKGLGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGLL 83 (118)
Q Consensus 12 ~~~~l~~~~g~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGGl~ 83 (118)
.+..+.+++|.+|+.+++|..+++++++++|||++||+ +|++++++++ +.+.+.+ +++||++||||+|
T Consensus 252 ~~~~~~~~~g~~~~v~d~e~~~a~~~la~~egi~~eps-sa~alaa~~~-~~~~~~~--~~~vv~i~tGg~~ 319 (319)
T PRK06381 252 ALEAIYDSHGYAFGFSDDEMVKYAELLRRMEGLNALPA-SASALAALVK-YLKKNGV--NDNVVAVITGRRQ 319 (319)
T ss_pred HHHHHHHcCCEEEEECHHHHHHHHHHHHHhCCcccCch-HHHHHHHHHH-HHHcCCC--CCcEEEEecCCCC
Confidence 35567889999999999999999999999999999999 7999999996 4444444 3799999999986
No 9
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.
Probab=98.88 E-value=2.2e-09 Score=85.03 Aligned_cols=66 Identities=18% Similarity=0.138 Sum_probs=56.9
Q ss_pred hhhhhccccCCCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCCc
Q 039995 12 MTRQPRLSKGLGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGL 82 (118)
Q Consensus 12 ~~~~l~~~~g~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGGl 82 (118)
.+....++.+..|..++++..+++++++++|||++||. ||++++++++ +.+.+ ++++||+|||||-
T Consensus 237 ~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~eGi~~~ps-s~~a~a~~~~-~~~~~---~~~~vv~i~tGG~ 302 (304)
T cd01562 237 TFEIIRKLVDDVVTVSEDEIAAAMLLLFEREKLVAEPA-GALALAALLS-GKLDL---KGKKVVVVLSGGN 302 (304)
T ss_pred HHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCceEchh-HHHHHHHHHh-Ccccc---CCCeEEEEecCCC
Confidence 34456678899999999999999999999999999999 9999999986 44432 5789999999994
No 10
>PRK08329 threonine synthase; Validated
Probab=98.86 E-value=4.2e-09 Score=86.63 Aligned_cols=68 Identities=21% Similarity=0.232 Sum_probs=61.1
Q ss_pred hhhhhccccCCCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCCc
Q 039995 12 MTRQPRLSKGLGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGL 82 (118)
Q Consensus 12 ~~~~l~~~~g~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGGl 82 (118)
.++.++++.|..|..+++|.+++++++++ +||.+||. +|++++++.+ +.+.|.+.++++||++|||+-
T Consensus 276 ~~~~l~~~~g~~~~V~d~e~~~a~~~l~~-~Gi~veps-sa~a~Aa~~~-l~~~g~i~~~~~Vv~~~TG~g 343 (347)
T PRK08329 276 MLRALEESNGFCISVGEEETRAALHWLRR-MGFLVEPT-SAVALAAYWK-LLEEGLIEGGSKVLLPLSGSG 343 (347)
T ss_pred HHHHHHHhCCEEEEECHHHHHHHHHHHHh-cCceECcc-HHHHHHHHHH-HHHhCCCCCCCeEEEEeCCCC
Confidence 46788888899999999999999999986 89999999 9999999986 666678888999999999974
No 11
>PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. Pyridoxal-5'-phosphate-dependent enzymes (B6 enzymes) catalyze manifold reactions in the metabolism of amino acids. Most of these enzymes can be assigned to one of three different families of homologous proteins, the alpha, beta and gamma families. The alpha and gamma family might be distantly related with one another, but are clearly not homologous with the beta family. The beta family includes L- and D-serine dehydratase, threonine dehydratase, the beta subunit of tryptophan synthase, threonine synthase and cysteine synthase. These enzymes catalyze beta-replacement or beta-elimination reactions []. Comparison of sequences from eukaryotic, archebacterial, and eubacterial species indicates that the functional specialization of most B6 enzymes has occurred already in the universal ancestor cell. The cofactor pyridoxal-5-phosphate must have emerged very early in biological evolution; conceivably, organic cofactors and metal ions were the first biological catalysts []. The 3D structure of the beta-subunit of tryptophan synthase has been solved. The subunit has two domains that are approximately the same size and similar to each other in folding pattern. Each has a core containing a four-stranded parallel beta-sheet with three helices on its inner side and one on the outer side. The cofactor is bound at the interface between the domains [].; GO: 0003824 catalytic activity, 0030170 pyridoxal phosphate binding, 0008152 metabolic process; PDB: 1P5J_A 2D1F_B 3AEY_B 3AEX_B 3IAU_A 2Q3B_A 2Q3D_A 2Q3C_A 1TZJ_A 1RQX_D ....
Probab=98.72 E-value=1.1e-08 Score=80.16 Aligned_cols=68 Identities=19% Similarity=0.244 Sum_probs=54.2
Q ss_pred hhhhhhccccCCCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCC--CCCCeEEEEecC
Q 039995 11 LMTRQPRLSKGLGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKK--WEGRKVLFVHTG 80 (118)
Q Consensus 11 ~~~~~l~~~~g~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~--~~g~rVLfiHTG 80 (118)
+.++.++++.+..|+.+++|..++++.+++++||.+||.|+++.++.+. ...+ +.+ +++++||+||||
T Consensus 237 ~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~~a~a~aa~~~-~~~~-~~~~~~~~~~vv~v~tG 306 (306)
T PF00291_consen 237 LDLELIDEYVGDVVGVSDEEALEAIRELAEREGILVEPSSAAALAAALK-LAER-GSLAPPAGKRVVVVLTG 306 (306)
T ss_dssp HHHHHHHHETEEEEEEEHHHHHHHHHHHHHHHSB-B-HHHHHHHHHHHH-HHHH-TGCHTTTTSEEEEEE-B
T ss_pred hhhhhhhhccccccccchHHHHHHHHHHHHHcCcEEcHHHHHHHHHHHH-HHHh-CCccccCCCeEEEEcCC
Confidence 4567788888889999999999999999999999999999998777754 4444 344 468999999998
No 12
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate. It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.
Probab=98.69 E-value=3.2e-08 Score=79.63 Aligned_cols=69 Identities=26% Similarity=0.321 Sum_probs=59.4
Q ss_pred hhhhhccccCCCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCCc
Q 039995 12 MTRQPRLSKGLGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGL 82 (118)
Q Consensus 12 ~~~~l~~~~g~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGGl 82 (118)
.++.++++.+..|..+++|..++++.+++++||++||. ||++++++++ +.+.+.+.++++||++|||+-
T Consensus 253 ~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~ps-sa~alaa~~~-l~~~~~~~~~~~Vv~v~tg~g 321 (324)
T cd01563 253 ALRAVRESGGTAVAVSDEEILEAQKLLARTEGIFVEPA-SAASLAGLKK-LREEGIIDKGERVVVVLTGHG 321 (324)
T ss_pred HHHHHHHhCCEEEEECHHHHHHHHHHHHhcCCceeCch-HHHHHHHHHH-HHHcCCCCCCCcEEEEeCCCc
Confidence 44566677788899999999999999999999999999 9999999986 555555667899999999963
No 13
>PRK07591 threonine synthase; Validated
Probab=98.66 E-value=3.5e-08 Score=83.38 Aligned_cols=73 Identities=18% Similarity=0.173 Sum_probs=64.4
Q ss_pred hhhhhhccccCCCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecC-Ccccc
Q 039995 11 LMTRQPRLSKGLGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTG-GLLGL 85 (118)
Q Consensus 11 ~~~~~l~~~~g~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTG-Gl~gl 85 (118)
..++.++++.|..+..+++|.+++++.+++.+||.+|| .+|++++++++ +.+.|.+.++++||+++|| |+-.+
T Consensus 321 ~~~~~i~~~~g~~v~Vsd~ei~~a~~~la~~eGi~~ep-ssaaalAal~~-l~~~g~i~~~~~VV~i~tG~G~kd~ 394 (421)
T PRK07591 321 YALDIARRTGGAIEDVTDEEIIEGIKLLARTEGIFTET-AGGVTVAVLKK-LVEAGKIDPDEETVVYITGNGLKTL 394 (421)
T ss_pred HHHHHHHHhCCEEEEECHHHHHHHHHHHHhcCCeeecc-hHHHHHHHHHH-HHHhCCCCCCCeEEEEeCCCccCCH
Confidence 35677888899999999999999999999999999999 79999999986 5566778889999999999 76543
No 14
>PRK07048 serine/threonine dehydratase; Validated
Probab=98.64 E-value=3.9e-08 Score=79.53 Aligned_cols=73 Identities=16% Similarity=0.110 Sum_probs=60.5
Q ss_pred hhhhccccCCCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCCcccccccHH
Q 039995 13 TRQPRLSKGLGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGLLGLFDKVD 90 (118)
Q Consensus 13 ~~~l~~~~g~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGGl~glf~~~~ 90 (118)
+..+.++.+.+|..+++|.+++++++++++||++||.+ |.+++++++ +.+. .++++||+|||||-..+..+.+
T Consensus 245 ~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~~eps~-a~~laa~~~-~~~~---~~~~~vv~i~tGGn~~~~~~~~ 317 (321)
T PRK07048 245 FPIIRRLVDDIVTVSDAELVDAMRFFAERMKIVVEPTG-CLGAAAALR-GKVP---LKGKRVGVIISGGNVDLARFAA 317 (321)
T ss_pred HHHHHHhCCceEEECHHHHHHHHHHHHHhCCceeccHH-HHHHHHHHh-Cchh---cCCCeEEEEeCCCCCCHHHHHH
Confidence 44566788999999999999999999999999999988 689999885 4332 2578999999999887765433
No 15
>TIGR00260 thrC threonine synthase. Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model.
Probab=98.63 E-value=7.6e-08 Score=77.56 Aligned_cols=70 Identities=20% Similarity=0.215 Sum_probs=60.3
Q ss_pred hhhhhhccccCCCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCCc
Q 039995 11 LMTRQPRLSKGLGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGL 82 (118)
Q Consensus 11 ~~~~~l~~~~g~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGGl 82 (118)
..++.++++.+..+..+++|..++++.+++++||.+||. ||++++++++ +.+.+.+.++++||++|||+-
T Consensus 254 ~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~ps-sa~alaa~~~-~~~~~~~~~~~~vv~i~tG~~ 323 (328)
T TIGR00260 254 RALELFRRSNGNAEDVSDEEILEAIKLLAREEGYFVEPH-SAVSVAALLK-LVEKGTADPAERVVCALTGNG 323 (328)
T ss_pred HHHHHHHhcCCcEEecCHHHHHHHHHHHHHhcCeeECch-HHHHHHHHHH-HHhCCCCCCCCcEEEEecCCC
Confidence 345556677888999999999999999999999999999 9999999986 555556767899999999974
No 16
>PRK06260 threonine synthase; Validated
Probab=98.54 E-value=1.5e-07 Score=78.56 Aligned_cols=70 Identities=26% Similarity=0.355 Sum_probs=60.9
Q ss_pred hhhhhccccCCCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCCcc
Q 039995 12 MTRQPRLSKGLGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGLL 83 (118)
Q Consensus 12 ~~~~l~~~~g~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGGl~ 83 (118)
.++.+++..|..+..+++|.+++++.+++++||.+||. +|.+++++.+ +.+.+.+.++++||+++||+-.
T Consensus 299 ~~~~l~~~~g~~v~V~d~e~~~a~~~la~~eGi~veps-saaalAa~~~-l~~~g~i~~~~~VV~i~tG~gl 368 (397)
T PRK06260 299 ALRAIRESGGTAEAVSDEEILDAQKLLARKEGIGVEPA-SAASVAGLIK-LVEEGVIDKDERVVCITTGHLL 368 (397)
T ss_pred HHHHHHHHCCEEEEECHHHHHHHHHHHHHhCCCeeCch-HHHHHHHHHH-HHHcCCCCCCCeEEEEeCCCcc
Confidence 34567777788899999999999999999999999999 7999999986 5566778789999999999753
No 17
>PRK06721 threonine synthase; Reviewed
Probab=98.54 E-value=1.6e-07 Score=77.43 Aligned_cols=67 Identities=25% Similarity=0.259 Sum_probs=58.0
Q ss_pred hccccCCCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCCccc
Q 039995 16 PRLSKGLGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGLLG 84 (118)
Q Consensus 16 l~~~~g~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGGl~g 84 (118)
++.+.+..|..+++|..++++.+++++||++||.+ |++++++++ +.+.+.+.++++||++|||+-.-
T Consensus 253 ~~~~~~~~~~V~d~e~~~a~~~la~~eGi~vepss-gaalaa~~~-~~~~~~~~~~~~Vv~v~~g~g~k 319 (352)
T PRK06721 253 AEQSHGEIDMVSDEEILHAYRLLAKSEGVFAEPGS-NASLAGVMK-HVQSGKIKKGETVVAVLTGNGLK 319 (352)
T ss_pred HHhcCCEEEEECHHHHHHHHHHHHHhcCcccCchH-HHHHHHHHH-HHHcCCCCCCCeEEEEeCCCCcC
Confidence 44567788999999999999999999999999999 899999996 55555677789999999998643
No 18
>PRK08197 threonine synthase; Validated
Probab=98.50 E-value=2e-07 Score=77.79 Aligned_cols=70 Identities=16% Similarity=0.183 Sum_probs=60.9
Q ss_pred hhhhhccccCCCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCCcc
Q 039995 12 MTRQPRLSKGLGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGLL 83 (118)
Q Consensus 12 ~~~~l~~~~g~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGGl~ 83 (118)
....+.++.|..+..+++|.+++++++++++||.+||. +|.+++|+.+ +.+++.+.++++||+++||+-.
T Consensus 312 ~~~~~~~~~g~~v~V~d~e~~~a~~~la~~eGi~veps-saaala~~~~-l~~~~~~~~~~~Vv~v~tG~g~ 381 (394)
T PRK08197 312 VLDAVRETGGCAIAVSDDAILAAQRELAREEGLFACPE-GAATFAAARQ-LRESGWLKGDERVVLFNTGSGL 381 (394)
T ss_pred HHHHHHHhCCEEEEeCHHHHHHHHHHHHhcCCceECch-HHHHHHHHHH-HHHcCCcCCCCcEEEEeCCCCc
Confidence 34556677888899999999999999999999999999 9999999986 5566678778999999999753
No 19
>cd06446 Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions. In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to glyceraldehyde 3-phosphate and indole at the active site of the alpha subunit. In the beta reaction, indole undergoes a PLP-dependent reaction with L-serine to form L-tryptophan at the active site of the beta subunit. Members of this CD, Trp-synth_B, are found in all three major phylogenetic divisions.
Probab=98.48 E-value=3.3e-07 Score=75.88 Aligned_cols=64 Identities=17% Similarity=0.132 Sum_probs=55.0
Q ss_pred hhccccCCCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecC-Cc
Q 039995 15 QPRLSKGLGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTG-GL 82 (118)
Q Consensus 15 ~l~~~~g~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTG-Gl 82 (118)
...++.+..|..++++.+++++++++++||++|| |||++++++++ +.+.. +++++||+|-|| |.
T Consensus 295 ~~~~~~d~~v~V~d~e~~~a~r~la~~eGi~~ep-ssgaalAa~~~-~~~~~--~~~~~Vv~i~~g~G~ 359 (365)
T cd06446 295 LKDSGRVEYVAVTDEEALEAFKLLARTEGIIPAL-ESSHAIAYAIK-LAKKL--GKEKVIVVNLSGRGD 359 (365)
T ss_pred HHHhCCceEEEeChHHHHHHHHHHHHhcCceeCc-cchHHHHHHHH-HHHhc--CCCCeEEEEeCCCCc
Confidence 4456677899999999999999999999999999 99999999986 44432 457899999999 64
No 20
>PRK06352 threonine synthase; Validated
Probab=98.43 E-value=5.2e-07 Score=74.48 Aligned_cols=67 Identities=28% Similarity=0.324 Sum_probs=56.3
Q ss_pred hhhccccCCCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCCc
Q 039995 14 RQPRLSKGLGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGL 82 (118)
Q Consensus 14 ~~l~~~~g~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGGl 82 (118)
..+++..|..|..++++..++++.+++++||++||. +|++++++++ +.+.+.+.++++||++|||+-
T Consensus 251 ~~~d~~~g~~~~V~d~e~~~a~r~la~~eGi~veps-saaalAa~~~-~~~~~~~~~~~~Vv~v~tg~G 317 (351)
T PRK06352 251 AARDESGGYIHSVTDDEIVNAYKKIAAQDGVFIEPG-SAASLAGVIQ-HVANGTIKKGETVVCVFTGNG 317 (351)
T ss_pred HHHHHhCCEEEEECHHHHHHHHHHHHhhcCceEchh-HHHHHHHHHH-HHHcCCCCCCCcEEEEeCCCC
Confidence 345566666799999999999999999999999999 9999999986 444455667889999999943
No 21
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=98.41 E-value=5.8e-07 Score=69.30 Aligned_cols=56 Identities=25% Similarity=0.433 Sum_probs=48.9
Q ss_pred CCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCC
Q 039995 22 LGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGG 81 (118)
Q Consensus 22 ~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGG 81 (118)
..+..++++..++++++++++||++||. ||++++++.+ +.+.+ .++++||++||||
T Consensus 189 ~~~~v~d~~~~~a~~~l~~~~gi~~~ps-sa~~~aa~~~-~~~~~--~~~~~vv~v~tg~ 244 (244)
T cd00640 189 EVVTVSDEEALEAIRLLAREEGILVEPS-SAAALAAALK-LAKKL--GKGKTVVVILTGG 244 (244)
T ss_pred eEEEECHHHHHHHHHHHHHHcCceECHh-HHHHHHHHHH-HHHhc--CCCCEEEEEeCCC
Confidence 5678889999999999999999999999 9999999986 44432 4678999999997
No 22
>PRK09224 threonine dehydratase; Reviewed
Probab=98.41 E-value=4.7e-07 Score=78.42 Aligned_cols=70 Identities=17% Similarity=0.170 Sum_probs=60.1
Q ss_pred hhhhhhccccCCCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCCcc
Q 039995 11 LMTRQPRLSKGLGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGLL 83 (118)
Q Consensus 11 ~~~~~l~~~~g~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGGl~ 83 (118)
..+..+.++.+..|..+++|..++|+++++.+|+++||. +|++++|++. ..+.+.+ ++++||+|||||-.
T Consensus 240 ~~~~~~~~~vd~~v~Vsd~ei~~a~~~l~~~~~~~~epa-gA~~lAal~~-~~~~~~~-~g~~vv~i~sG~n~ 309 (504)
T PRK09224 240 ETFRLCQEYVDDVITVDTDEICAAIKDVFEDTRSIAEPA-GALALAGLKK-YVAQHGI-EGETLVAILSGANM 309 (504)
T ss_pred HHHHHHHhcCCeEEEECHHHHHHHHHHHHHhcCeEEcHH-HHHHHHHHHH-hhhhcCC-CCCeEEEEECCCCC
Confidence 345667788999999999999999999999999999999 9999999986 4443445 48899999999854
No 23
>PRK06815 hypothetical protein; Provisional
Probab=98.39 E-value=3.7e-07 Score=74.01 Aligned_cols=67 Identities=18% Similarity=0.133 Sum_probs=57.0
Q ss_pred hhhhccccCCCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCCccc
Q 039995 13 TRQPRLSKGLGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGLLG 84 (118)
Q Consensus 13 ~~~l~~~~g~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGGl~g 84 (118)
+..+.++.+..|..++++..++++.+++++||++||. +|++++++++ +.+. . ++++||+|||||-..
T Consensus 242 ~~~~~~~~~~~~~V~d~e~~~a~~~la~~~gi~veps-sg~alaa~~~-~~~~--~-~~~~vv~i~tG~~~~ 308 (317)
T PRK06815 242 FPLCQQLIDQKVLVSEEEIKEAMRLIAETDRWLIEGA-AGVALAAALK-LAPR--Y-QGKKVAVVLCGKNIV 308 (317)
T ss_pred HHHHHHhCCeEEEECHHHHHHHHHHHHHhcCCeEecH-HHHHHHHHHh-Cchh--c-CCCcEEEEECCCCCC
Confidence 3445677889999999999999999999999999999 9999999986 4432 3 578999999998654
No 24
>PRK07409 threonine synthase; Validated
Probab=98.29 E-value=1.4e-06 Score=71.59 Aligned_cols=67 Identities=31% Similarity=0.360 Sum_probs=57.2
Q ss_pred hhhccccCCCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecC-Cc
Q 039995 14 RQPRLSKGLGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTG-GL 82 (118)
Q Consensus 14 ~~l~~~~g~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTG-Gl 82 (118)
..++++.+..+..+++|.+++++.+++++||++||. +|.+++++++ +.+.+.+.++++||+++|| |.
T Consensus 255 ~~~~~~~~~~v~Vsd~e~~~a~~~l~~~egi~v~ps-sa~alaa~~~-~~~~~~~~~~~~VV~i~tg~g~ 322 (353)
T PRK07409 255 AARDESGGLIDAVTDEEILEAYRLLARKEGVFCEPA-SAASVAGLLK-AIRAGKIPEGSTVVCTLTGNGL 322 (353)
T ss_pred HHHHHhCCEEEEECHHHHHHHHHHHHHhCCceeCch-HHHHHHHHHH-HHHcCCCCCCCcEEEEecCccc
Confidence 446667778899999999999999999999999999 8999999986 4444556678899999999 54
No 25
>PRK12391 tryptophan synthase subunit beta; Reviewed
Probab=98.27 E-value=2e-06 Score=73.55 Aligned_cols=68 Identities=24% Similarity=0.268 Sum_probs=55.6
Q ss_pred CCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecC-CcccccccHH
Q 039995 22 LGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTG-GLLGLFDKVD 90 (118)
Q Consensus 22 ~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTG-Gl~glf~~~~ 90 (118)
..+..++.|..+++++|+++|||+++|. +|.++++++++..+......+++|||++|| |...+..+.+
T Consensus 355 ~~~~V~d~e~~~a~~~~a~~eGi~~~ps-s~~alaaa~~~a~~~~~~~~~~~iv~~lsG~G~~d~~~y~~ 423 (427)
T PRK12391 355 EARAYPQTEVFEAAVLFARTEGIVPAPE-SSHAIAAAIDEALKAKEEGEEKVILFNLSGHGLLDLAAYDA 423 (427)
T ss_pred EEEEECHHHHHHHHHHHHHHcCCeechH-HHHHHHHHHHHHHhccccCCCCEEEEEeCCCCCCCHHHHHH
Confidence 4478999999999999999999999999 999999999754432222247899999999 9988765543
No 26
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=98.20 E-value=2.2e-06 Score=74.40 Aligned_cols=70 Identities=19% Similarity=0.161 Sum_probs=60.4
Q ss_pred hhhhhhccccCCCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCCcc
Q 039995 11 LMTRQPRLSKGLGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGLL 83 (118)
Q Consensus 11 ~~~~~l~~~~g~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGGl~ 83 (118)
..+..+.++.+..+..+++|..++|+++++.+|+++||. +|++++|++....+ +.+ ++++||+|||||-.
T Consensus 237 ~~~~~~~~~vd~vv~V~d~ei~~ai~~l~~~~gii~Epa-gA~~lAal~~~~~~-~~~-~~~~vv~i~sG~n~ 306 (499)
T TIGR01124 237 ETFRLCQQYLDDIVTVDTDEVCAAIKDLFEDTRAVAEPA-GALALAGLKKYVAL-HGI-RGQTLVAILSGANM 306 (499)
T ss_pred HHHHHHHHhCCEEEEECHHHHHHHHHHHHHhcCcEEech-HHHHHHHHHHhhhh-cCC-CCCeEEEEECCCCC
Confidence 456677788999999999999999999999999999999 99999999864443 344 58899999999954
No 27
>PLN02550 threonine dehydratase
Probab=98.14 E-value=4e-06 Score=74.64 Aligned_cols=71 Identities=14% Similarity=0.075 Sum_probs=60.8
Q ss_pred hhhhhhccccCCCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCCccc
Q 039995 11 LMTRQPRLSKGLGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGLLG 84 (118)
Q Consensus 11 ~~~~~l~~~~g~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGGl~g 84 (118)
..++.+.++.+..+..++++..++|+++++.+|+++||. +|++++|+++. .+.+.+ ++++||+|||||-..
T Consensus 329 ~t~~i~~~~vD~vV~Vsd~eI~~Ai~~l~e~~givvEpA-GA~alAall~~-~~~~~~-~g~~Vv~vlsGgNid 399 (591)
T PLN02550 329 ETFRLCRELVDGVVLVSRDAICASIKDMFEEKRSILEPA-GALALAGAEAY-CKYYGL-KDENVVAITSGANMN 399 (591)
T ss_pred HHHHHHHhhCCEEEEECHHHHHHHHHHHHHHCCCEEeHH-HHHHHHHHHHH-HHhcCC-CCCeEEEEecCCCCC
Confidence 455677888999999999999999999999999999999 99999999864 433445 688999999999543
No 28
>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme. This model represents a family of pyridoxal-phosphate dependent enzyme (pfam00291) closely related to the beta subunit of tryptophan synthase (TIGR00263). However, the only case in which a member of this family replaces a member of TIGR00263 is in Sulfolobus species which contain two sequences which hit this model, one of which is proximal to the alpha subunit. In every other case so far, either the species appears not to make tryptophan (there is no trp synthase alpha subunit), or a trp synthase beta subunit matching TIGR00263 is also found.
Probab=98.07 E-value=9.4e-06 Score=69.22 Aligned_cols=64 Identities=25% Similarity=0.334 Sum_probs=51.8
Q ss_pred CcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCC-CCCeEEEEecC-Cccccccc
Q 039995 23 GYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKW-EGRKVLFVHTG-GLLGLFDK 88 (118)
Q Consensus 23 GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~-~g~rVLfiHTG-Gl~glf~~ 88 (118)
....+++|..++++.|+++|||+++|. ||.++++++++..+ .... +..+|||++|| |...+-.+
T Consensus 347 ~~~V~d~e~~~a~r~la~~eGi~~eps-sa~alaaai~~a~~-~~~~~~~~vvv~~lsG~G~~d~~~y 412 (419)
T TIGR01415 347 ARAYDQEEAFEAAVIFAKTEGIVPAPE-SAHAIAAAIDEARK-CRETGEEKVILFNLSGHGLLDLKAY 412 (419)
T ss_pred EEEECHHHHHHHHHHHHHhcCCccccH-HHHHHHHHHHHHHh-cCcCCCCeEEEEEcCCCCcCCHHHH
Confidence 456789999999999999999999999 99999999975544 3332 23478899999 98876444
No 29
>PRK05638 threonine synthase; Validated
Probab=98.07 E-value=9.7e-06 Score=68.78 Aligned_cols=67 Identities=21% Similarity=0.215 Sum_probs=53.3
Q ss_pred hhhhccccCCCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCCc
Q 039995 13 TRQPRLSKGLGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGL 82 (118)
Q Consensus 13 ~~~l~~~~g~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGGl 82 (118)
+..+.++ ++.+...+++.+...+.+..++||.+||. +|.+++|+.+ +.+.|.+.++++||+++||+-
T Consensus 289 ~~~i~~~-~g~~~~v~d~~i~~a~~~l~~eGi~~eps-saaa~Aa~~~-~~~~g~i~~~~~Vv~i~tG~g 355 (442)
T PRK05638 289 SEAIKES-GGTAVVVNEEEIMAGEKLLAKEGIFAELS-SAVVMPALLK-LGEEGYIEKGDKVVLVVTGSG 355 (442)
T ss_pred HHHHHHh-CCEEEEECHHHHHHHHHHHHhcCceecch-HHHHHHHHHH-HHHcCCCCCCCeEEEEeCCCC
Confidence 4455554 66777777777766666666799999999 9999999986 666677888999999999964
No 30
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=97.98 E-value=1.7e-05 Score=63.15 Aligned_cols=61 Identities=13% Similarity=0.144 Sum_probs=52.7
Q ss_pred cccCCCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCCc
Q 039995 18 LSKGLGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGL 82 (118)
Q Consensus 18 ~~~g~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGGl 82 (118)
++....|..+++|..++++.+++++||++||. +|++++++++...+ . .++++||+|.||+-
T Consensus 226 ~~~~~~~~V~d~e~~~a~~~l~~~~gi~~eps-sa~a~a~~~~~~~~-~--~~~~~vv~v~~~~g 286 (291)
T cd01561 226 SLIDEVVRVSDEEAFAMARRLAREEGLLVGGS-SGAAVAAALKLAKR-L--GPGKTIVTILPDSG 286 (291)
T ss_pred hhCceeEEECHHHHHHHHHHHHHHhCeeEccc-HHHHHHHHHHHHHh-c--CCCCeEEEEECCCc
Confidence 45778999999999999999999999999999 99999999974433 2 25789999999964
No 31
>PRK08639 threonine dehydratase; Validated
Probab=97.97 E-value=1.8e-05 Score=66.82 Aligned_cols=69 Identities=12% Similarity=0.121 Sum_probs=57.8
Q ss_pred hhhhhccccCCCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCCcccc
Q 039995 12 MTRQPRLSKGLGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGLLGL 85 (118)
Q Consensus 12 ~~~~l~~~~g~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGGl~gl 85 (118)
.+..+.++.+..+..+++|..++++.+++++||++||. +|.++++++. .++ .+ ++++||+|||||-..+
T Consensus 251 ~~~~~~~~vd~~v~V~d~ei~~a~~~l~~~~gi~~e~s-ga~~lAal~~-~~~--~~-~~~~vv~v~sGgn~d~ 319 (420)
T PRK08639 251 TFEILKDVVDDVVLVPEGAVCTTILELYNKEGIVAEPA-GALSIAALEL-YKD--EI-KGKTVVCVISGGNNDI 319 (420)
T ss_pred HHHHHHHhCCeEEEECHHHHHHHHHHHHHhcCceecch-HHHHHHHHHh-hhh--hc-CCCeEEEEeCCCCCCH
Confidence 34455677889999999999999999999999999998 8999999975 443 23 6889999999997643
No 32
>PRK12483 threonine dehydratase; Reviewed
Probab=97.96 E-value=1.5e-05 Score=69.87 Aligned_cols=71 Identities=18% Similarity=0.180 Sum_probs=60.3
Q ss_pred hhhhhhccccCCCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCCccc
Q 039995 11 LMTRQPRLSKGLGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGLLG 84 (118)
Q Consensus 11 ~~~~~l~~~~g~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGGl~g 84 (118)
..+..+.++.+..+..+++|..++|+.+++.+|+++||. +|+++++++....+ +.+ ++++|+.|+|||-..
T Consensus 257 ~~~~~~~~~vd~vv~Vse~ei~~ai~~l~~~~~i~vEpa-gAaalAal~~~~~~-~~~-~g~~VV~IlsGgNid 327 (521)
T PRK12483 257 HTFELCRHYVDEVVTVSTDELCAAIKDIYDDTRSITEPA-GALAVAGIKKYAER-EGI-EGQTLVAIDSGANVN 327 (521)
T ss_pred HHHHHHHHhCCEEEEECHHHHHHHHHHHHHhCCcEEeHH-HHHHHHHHHHHHHh-cCC-CCCEEEEEeCCCCCC
Confidence 345666788899999999999999999999999999999 99999999864333 345 588999999999644
No 33
>PRK06382 threonine dehydratase; Provisional
Probab=97.77 E-value=5e-05 Score=63.84 Aligned_cols=69 Identities=13% Similarity=0.156 Sum_probs=53.5
Q ss_pred hhhhhhccccCCCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCCccc
Q 039995 11 LMTRQPRLSKGLGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGLLG 84 (118)
Q Consensus 11 ~~~~~l~~~~g~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGGl~g 84 (118)
+.+..+.++.+..+..+++|..++++.+++++||++||. .|=+++++.. ....+++++||+|||||-..
T Consensus 244 ~~~~~~~~~~d~~v~V~d~ei~~a~~~l~~~~gi~~eps-ga~~laal~~----~~~~~~~~~Vv~i~sGGn~d 312 (406)
T PRK06382 244 LTFDIAKNYVDDIVTVTEESVSKAIYKLFEREKIVAEPS-GAVGLAAIME----GKVDVKGKKVAIVVSGGNIN 312 (406)
T ss_pred HHHHHHHHcCCEEEEECHHHHHHHHHHHHHHcCceechH-HHHHHHHHHh----ccccCCCCEEEEEeCCCCCC
Confidence 344556788899999999999999999999999999997 5555555532 21223578999999999754
No 34
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=97.70 E-value=9.4e-05 Score=61.91 Aligned_cols=60 Identities=13% Similarity=0.234 Sum_probs=51.2
Q ss_pred cCCCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCCc
Q 039995 20 KGLGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGL 82 (118)
Q Consensus 20 ~g~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGGl 82 (118)
...-|..++++.+++++.+++++||+++|. ||+++++++. +.+. .++++++||++-|++-
T Consensus 243 ~d~~~~V~~~e~~~a~~~l~~~~gi~~~~s-sg~~~aa~~~-~~~~-~~~~~~~vv~~~~d~g 302 (454)
T TIGR01137 243 VDEWIKTDDKESFKMARRLIKEEGLLVGGS-SGSAVVAALK-AAED-ELTEDQVIVVLLPDSI 302 (454)
T ss_pred CCeEEEECHHHHHHHHHHHHHHhCccCcHH-HHHHHHHHHH-HHHh-hcCCCCEEEEEECCCC
Confidence 344589999999999999999999999999 9999999996 4443 4667889999999864
No 35
>PRK08198 threonine dehydratase; Provisional
Probab=97.69 E-value=5.6e-05 Score=62.99 Aligned_cols=70 Identities=16% Similarity=0.135 Sum_probs=58.2
Q ss_pred hhhhhhccccCCCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCCcccc
Q 039995 11 LMTRQPRLSKGLGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGLLGL 85 (118)
Q Consensus 11 ~~~~~l~~~~g~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGGl~gl 85 (118)
+.+..+.++.+..+..++++..++++.+++++|+.+||. +|.++++++. .. ...++++|++++|||-.+.
T Consensus 241 ~~~~~~~~~~d~~v~V~d~e~~~a~~~l~~~~g~~~e~s-ga~~lAal~~-~~---~~~~~~~vv~vl~ggn~~~ 310 (404)
T PRK08198 241 LTFEIIRELVDDVVTVSDEEIARAILLLLERAKLVVEGA-GAVSVAALLS-GK---LDVKGKKVVAVLSGGNIDV 310 (404)
T ss_pred HHHHHHHHhCCEEEEECHHHHHHHHHHHHHhcCeEEehH-HHHHHHHHHh-ch---hhcCCCeEEEEECCCCCCH
Confidence 344556677888999999999999999999999999998 9999999985 33 2346889999999997643
No 36
>PRK10717 cysteine synthase A; Provisional
Probab=97.62 E-value=0.00012 Score=59.56 Aligned_cols=59 Identities=17% Similarity=0.156 Sum_probs=50.8
Q ss_pred cCCCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCCc
Q 039995 20 KGLGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGL 82 (118)
Q Consensus 20 ~g~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGGl 82 (118)
....+..+++|..++++.+++++||++|| ++|++++++++ +.+. ..++++||++-||+-
T Consensus 250 ~d~~v~V~d~e~~~a~~~l~~~~gi~vep-ssga~laa~~~-l~~~--~~~~~~Vv~v~~g~g 308 (330)
T PRK10717 250 IDDAIRIPDEEALSTAYRLLEEEGLCLGG-SSGINVAAALR-LARE--LGPGHTIVTILCDSG 308 (330)
T ss_pred CCEEEEECHHHHHHHHHHHHHhcCCeEee-cHHHHHHHHHH-HHHh--cCCCCEEEEEECCCc
Confidence 45689999999999999999999999999 99999999997 4432 346789999999954
No 37
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=97.60 E-value=0.00011 Score=60.59 Aligned_cols=67 Identities=12% Similarity=0.096 Sum_probs=52.9
Q ss_pred hhhhhccccCCCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCCcc
Q 039995 12 MTRQPRLSKGLGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGLL 83 (118)
Q Consensus 12 ~~~~l~~~~g~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGGl~ 83 (118)
.+..+.++.+..+..+++|..++++++++++|+.+||.. |-+++++++ .. ...++++||++||||-.
T Consensus 220 ~~~~~~~~vd~~v~V~d~e~~~a~~~l~~~~gi~~e~s~-a~~laa~~~-~~---~~~~~~~vv~i~sGGn~ 286 (380)
T TIGR01127 220 TFNIIKEYVDDVVTVDEEEIANAIYLLLERHKILAEGAG-AAGVAALLE-QK---VDVKGKKIAVVLSGGNI 286 (380)
T ss_pred HHHHHHHhCCEEEEECHHHHHHHHHHHHHhcCeEechHH-HHHHHHHHh-Cc---cccCCCeEEEEeCCCCC
Confidence 334556777889999999999999999999999999966 557777654 11 12357899999999964
No 38
>PRK06110 hypothetical protein; Provisional
Probab=97.57 E-value=0.00014 Score=59.11 Aligned_cols=69 Identities=16% Similarity=0.126 Sum_probs=54.8
Q ss_pred hhhhhccccCCCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCCcccc
Q 039995 12 MTRQPRLSKGLGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGLLGL 85 (118)
Q Consensus 12 ~~~~l~~~~g~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGGl~gl 85 (118)
.+..++++.+..|..+++|..++++.+++++|+..+|. +|=++++++. +.+ .. ++++||+|+|||...+
T Consensus 241 ~~~~~~~~~d~~~~Vsd~e~~~a~~~l~~~~gi~~e~s-saa~laa~~~-~~~--~~-~~~~Vv~i~tGgn~d~ 309 (322)
T PRK06110 241 ALEVIRAGADRIVRVTDDEVAAAMRAYFTDTHNVAEGA-GAAALAAALQ-ERE--RL-AGKRVGLVLSGGNIDR 309 (322)
T ss_pred HHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCcEEehH-HHHHHHHHHh-Chh--hh-CCCcEEEEECCCCCCH
Confidence 34556778899999999999999999999999999984 5666666654 322 12 5789999999998754
No 39
>PRK07476 eutB threonine dehydratase; Provisional
Probab=97.53 E-value=0.00016 Score=58.76 Aligned_cols=66 Identities=11% Similarity=0.032 Sum_probs=50.1
Q ss_pred hhhhccccCCCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCC-CCeEEEEecCCccc
Q 039995 13 TRQPRLSKGLGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWE-GRKVLFVHTGGLLG 84 (118)
Q Consensus 13 ~~~l~~~~g~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~-g~rVLfiHTGGl~g 84 (118)
+..+.+....-|..+++|.+++++.+++++||+++|- ++=+++++++ +.+.+ +++||++||||-..
T Consensus 242 ~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~ve~a-~a~~laal~~-----~~~~~~~~~Vvvi~tGg~~~ 308 (322)
T PRK07476 242 FAMCRALLDDVVLLDEAEIAAGIRHAYREERLVVEGA-GAVGIAALLA-----GKIAARDGPIVVVVSGANID 308 (322)
T ss_pred HHHHHhcCCeEEEECHHHHHHHHHHHHHhcCceEeCh-hHHHHHHHHh-----CCcccCCCcEEEEECCCCCC
Confidence 3344455566799999999999999999999999984 4556666652 23333 48999999999774
No 40
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=97.52 E-value=0.00026 Score=56.61 Aligned_cols=57 Identities=16% Similarity=0.234 Sum_probs=49.0
Q ss_pred CCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCCc
Q 039995 22 LGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGL 82 (118)
Q Consensus 22 ~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGGl 82 (118)
.-+..+++|..++++++++++||++||. +|++++++++ +.+. +.++++||++-|+.-
T Consensus 233 ~~~~V~d~e~~~a~~~l~~~~gi~~~ps-sga~laa~~~-~~~~--~~~~~~vv~v~~d~G 289 (298)
T TIGR01139 233 EVITVSDEEAIETARRLAAEEGILVGIS-SGAAVAAALK-LAKR--PEPDKLIVVILPSTG 289 (298)
T ss_pred EEEEECHHHHHHHHHHHHHhcCceEccc-HHHHHHHHHH-HHHh--cCCCCEEEEEECCCC
Confidence 4489999999999999999999999999 9999999996 4432 336789999999864
No 41
>TIGR01136 cysKM cysteine synthases. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.
Probab=97.39 E-value=0.00038 Score=55.79 Aligned_cols=62 Identities=11% Similarity=0.153 Sum_probs=51.6
Q ss_pred cccCCCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCCc
Q 039995 18 LSKGLGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGL 82 (118)
Q Consensus 18 ~~~g~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGGl 82 (118)
++....+..++++..++++.+++.+||.+||. +|++++++++ +.+.. ..++++||.+-||.-
T Consensus 229 ~~~d~~~~V~d~e~~~a~~~l~~~~gi~~e~s-saa~~a~~~~-~~~~~-~~~~~~vv~i~~d~g 290 (299)
T TIGR01136 229 SLIDEVITVSDEDAIETARRLAREEGILVGIS-SGAAVAAALK-LAKRL-ENADKVIVAILPDTG 290 (299)
T ss_pred hhCCEEEEECHHHHHHHHHHHHHHhCceEcch-HHHHHHHHHH-HHHhc-CCCCCEEEEEECCCC
Confidence 44557899999999999999999999999988 9999999996 44432 234789999999853
No 42
>TIGR03844 cysteate_syn cysteate synthase. Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M.
Probab=97.22 E-value=0.00075 Score=57.22 Aligned_cols=70 Identities=16% Similarity=0.136 Sum_probs=60.9
Q ss_pred hhhhhhccccCCCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCCc
Q 039995 11 LMTRQPRLSKGLGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGL 82 (118)
Q Consensus 11 ~~~~~l~~~~g~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGGl 82 (118)
.+.+.+.+..|.-...+++|+.++++.+++++||..||.= |=+++|+.+ +.+.|.+.++++|+.+-|||-
T Consensus 310 ~~l~air~~~g~~v~Vsd~eI~~A~~~l~~~~gi~vEpa~-A~alAal~k-~~~~g~i~~~~~Vv~vlTG~g 379 (398)
T TIGR03844 310 GVFDALIATGGQMYGVSNKEAVSAGKLFEESEGIDILPAA-AVAVAALVK-AVESGFIGPDDDILLNITGGG 379 (398)
T ss_pred HHHHHHHHhCCEEEEECHHHHHHHHHHHHhhCCccccccH-HHHHHHHHH-HHHhCCCCCCCeEEEEECCcc
Confidence 3567788888899999999999999999999999999985 779999986 556677878899999999975
No 43
>PRK08526 threonine dehydratase; Provisional
Probab=97.16 E-value=0.00079 Score=57.04 Aligned_cols=61 Identities=16% Similarity=0.183 Sum_probs=46.8
Q ss_pred cCCCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCCccc
Q 039995 20 KGLGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGLLG 84 (118)
Q Consensus 20 ~g~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGGl~g 84 (118)
...-...+++|..++++.+++++||+++|- +|-++++++. ..+.+.++++|++|+|||--.
T Consensus 248 vd~~v~V~d~ei~~A~~~l~~~~gi~ve~a-ga~~lAall~---~~~~~~~~~~Vv~ilsGGnid 308 (403)
T PRK08526 248 VDDFVQVDDEEIANAILFLLEKQKIVVEGA-GAASVAALLH---QKIDLKKGKKIGVVLSGGNID 308 (403)
T ss_pred CCEEEEECHHHHHHHHHHHHHhcCcEeeHH-HHHHHHHHHh---CccccccCCeEEEEECCCCCC
Confidence 334568889999999999999999999994 5667777652 223444688999999999643
No 44
>PLN02569 threonine synthase
Probab=96.71 E-value=0.0039 Score=54.37 Aligned_cols=65 Identities=18% Similarity=0.160 Sum_probs=53.3
Q ss_pred hhccccCCCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCCc
Q 039995 15 QPRLSKGLGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGL 82 (118)
Q Consensus 15 ~l~~~~g~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGGl 82 (118)
.+.+..|.....+++|.++++++ ++++||.+||. +|-+++++.+ +.+.|.+.++++||.+-||.-
T Consensus 374 al~~s~g~~v~VsDeEi~~a~~~-a~~~Gi~veps-sAaalAal~k-l~~~g~i~~~~~VV~i~Tg~G 438 (484)
T PLN02569 374 ALKESNGIVEEATEEELMDAQAE-ADKTGMFLCPH-TGVALAALKK-LRASGVIGPTDRTVVVSTAHG 438 (484)
T ss_pred HHHHhCCEEEEECHHHHHHHHHH-HHHCCcEECch-HHHHHHHHHH-HHHcCCCCCCCcEEEEeCCCc
Confidence 34443344578899999999999 99999999999 7999999986 566677878899999999953
No 45
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
Probab=96.57 E-value=0.0057 Score=49.86 Aligned_cols=70 Identities=13% Similarity=0.108 Sum_probs=53.9
Q ss_pred hhhhccccCCCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHH----HHHhCCCCCCCCeEEEEecCCcc
Q 039995 13 TRQPRLSKGLGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLN----DMAQNPKKWEGRKVLFVHTGGLL 83 (118)
Q Consensus 13 ~~~l~~~~g~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~----~l~~~g~~~~g~rVLfiHTGGl~ 83 (118)
+..+.+..+.-+-.+++|..++++++++++||..+|.= |=++++++. .+.+.+.+.++++||.|-|||-.
T Consensus 230 ~~~~~~~~~~~v~Vsd~e~~~a~~~l~~~~gi~~~~ss-aa~laa~~~~~~~~~~~~~~~~~~~~Vv~iltg~n~ 303 (316)
T cd06448 230 LEYAQEHNIKSEVVSDRDAVQACLRFADDERILVEPAC-GAALAVVYSGKILDLQLEVLLTPLDNVVVVVCGGSN 303 (316)
T ss_pred HHHHHhcCCeEEEECHHHHHHHHHHHHHHcCceechhH-HHHHHHHHhCcchhhhcccccCCCCeEEEEECCCCC
Confidence 34444445566788899999999999999999999985 667788763 23333567789999999999865
No 46
>PRK08246 threonine dehydratase; Provisional
Probab=96.38 E-value=0.0063 Score=49.41 Aligned_cols=69 Identities=13% Similarity=0.075 Sum_probs=55.3
Q ss_pred hhhhhhccccCCCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCCcc
Q 039995 11 LMTRQPRLSKGLGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGLL 83 (118)
Q Consensus 11 ~~~~~l~~~~g~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGGl~ 83 (118)
.++..+.++.+.-+..+++|..++++++++++||.+||.= |=+++++.. ... .+.++++||.+-|||--
T Consensus 236 ~~~~~~~~~~~~~~~Vsd~e~~~a~~~l~~~egi~~e~s~-aa~lAa~~~-~~~--~~~~~~~vv~i~~g~n~ 304 (310)
T PRK08246 236 IAFALARAHVVTSVLVSDEAIIAARRALWEELRLAVEPGA-ATALAALLS-GAY--VPAPGERVAVVLCGANT 304 (310)
T ss_pred HHHHHHHhcCCeEEEECHHHHHHHHHHHHHHcCceeehHH-HHHHHHHHh-CCc--cccCCCeEEEEECCCCC
Confidence 4566667778889999999999999999999999999986 667888753 221 23467899999999854
No 47
>COG0498 ThrC Threonine synthase [Amino acid transport and metabolism]
Probab=96.38 E-value=0.0093 Score=51.39 Aligned_cols=60 Identities=27% Similarity=0.364 Sum_probs=50.9
Q ss_pred cCCCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCCc
Q 039995 20 KGLGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGL 82 (118)
Q Consensus 20 ~g~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGGl 82 (118)
.|-....+++|.+++++++++++|+++||- ||=+++++.+ ++++ .+.++.++|++-||..
T Consensus 313 ~g~~~~vsdeEi~~a~~~l~~~eG~~~eP~-sA~ava~l~k-~~~~-~i~~~~~vV~v~Tg~~ 372 (411)
T COG0498 313 GGLAVAVSDEEILEAIKLLAEREGILIEPH-SAVAVAALLK-LREK-IIDPDETVVLVLTGHG 372 (411)
T ss_pred CCceEEeCHHHHHHHHHHHHHhCCcccCcc-HHHHHHHHHH-HHHh-hcCCCCeEEEEecCCc
Confidence 455677889999999999999999999997 5889999986 5554 6777899999999963
No 48
>PLN02970 serine racemase
Probab=96.15 E-value=0.01 Score=48.61 Aligned_cols=68 Identities=19% Similarity=0.186 Sum_probs=50.1
Q ss_pred hccccCCCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCC-CCeEEEEecCCccc
Q 039995 16 PRLSKGLGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWE-GRKVLFVHTGGLLG 84 (118)
Q Consensus 16 l~~~~g~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~-g~rVLfiHTGGl~g 84 (118)
+.+....-+-.+++|..++++.+++++||+++|.= |=++++++....+.+.+.+ +++|+++-|||-.-
T Consensus 250 ~~~~~d~~v~V~d~e~~~a~~~la~~~gi~ve~s~-aa~laaa~~~~~~~~~~~~~~~~vv~v~~Ggn~~ 318 (328)
T PLN02970 250 VRDLVDDVITVDDKEIIEAMKLCYERLKVVVEPSG-AIGLAAALSDSFRSNPAWKGCKNVGIVLSGGNVD 318 (328)
T ss_pred HHhhCCEEEEECHHHHHHHHHHHHHhcCcEEeHHH-HHHHHHHHhCcccccccccCCCeEEEEECCCCCC
Confidence 33444556777899999999999999999999985 5677776543333223323 47999999999664
No 49
>TIGR02991 ectoine_eutB ectoine utilization protein EutB. Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.
Probab=95.92 E-value=0.017 Score=47.08 Aligned_cols=68 Identities=7% Similarity=-0.025 Sum_probs=53.3
Q ss_pred hhhhhhccccCCCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCCccc
Q 039995 11 LMTRQPRLSKGLGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGLLG 84 (118)
Q Consensus 11 ~~~~~l~~~~g~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGGl~g 84 (118)
.++..+.+..+.-+..+++|..++++.+++++|+.+||- .+=+++++.. +.+.++++|+.+-|||-..
T Consensus 240 ~~~~~~~~~vd~~v~V~d~e~~~a~~~l~~~~g~~ve~s-~a~~~Aal~~-----~~~~~~~~vvvvltG~n~~ 307 (317)
T TIGR02991 240 VTFAMCKALLDEIVLVSEAEIAAGIRHAYAEEREIVEGA-GAVGIAALLA-----GKIKNPGPCAVIVSGRNID 307 (317)
T ss_pred HHHHHHHHhCCeEEEECHHHHHHHHHHHHHhCCcEEcch-HHHHHHHHHc-----CccccCCcEEEEeCCCCCC
Confidence 344455566677889999999999999999999999995 5777777752 2334578999999999764
No 50
>PRK02991 D-serine dehydratase; Provisional
Probab=95.36 E-value=0.022 Score=49.17 Aligned_cols=70 Identities=16% Similarity=0.156 Sum_probs=54.9
Q ss_pred hhhhhccccCCCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCC------CC---CCCeEEEEecCCc
Q 039995 12 MTRQPRLSKGLGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPK------KW---EGRKVLFVHTGGL 82 (118)
Q Consensus 12 ~~~~l~~~~g~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~------~~---~g~rVLfiHTGGl 82 (118)
.|..+.++.+.-+-.++++..++++.+++++||+++|.= |=+++++.+ +.+++. +. .+++||.|-|||.
T Consensus 346 ~~~~~~~~vd~~v~VsD~ei~~a~~~L~~~~gi~vEpS~-AaalAa~~~-l~~~~~~~~~~~l~~~~~~~~vv~~~~gg~ 423 (441)
T PRK02991 346 VGRAMERLLDGVYTVSDETLYRLLGLLADTEGIRLEPSA-LAGMAGPVR-VCASVAYLQRHGLSEQLKNATHLVWATGGS 423 (441)
T ss_pred HHHHHHHhCCeEEEECHHHHHHHHHHHHHhcCceeeHHH-HHHHHHHHH-HHhCHHHHHHcCCccccCCCEEEEEECCCC
Confidence 466666777788889999999999999999999999985 668888864 332222 22 4789999999996
Q ss_pred c
Q 039995 83 L 83 (118)
Q Consensus 83 ~ 83 (118)
.
T Consensus 424 ~ 424 (441)
T PRK02991 424 M 424 (441)
T ss_pred C
Confidence 4
No 51
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=95.13 E-value=0.054 Score=45.87 Aligned_cols=60 Identities=15% Similarity=0.221 Sum_probs=47.3
Q ss_pred cCCCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCCccc
Q 039995 20 KGLGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGLLG 84 (118)
Q Consensus 20 ~g~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGGl~g 84 (118)
...-.-.++++..++++.+++++|++.+| =+|=+++++.. ..+. .++++||.|-|||-..
T Consensus 248 vd~vv~V~d~e~~~a~~~l~~~~gi~ve~-agaa~lAa~~~-~~~~---~~~~~Vv~ilsGgn~d 307 (409)
T TIGR02079 248 PDEVTLVPEGAVCTTILDLYNLEGIVAEP-AGALSIAALER-LGEE---IKGKTVVCVVSGGNND 307 (409)
T ss_pred CCcEEEECHHHHHHHHHHHHHhcCceecc-hHHHHHHHHHh-hhhh---cCCCeEEEEECCCCCC
Confidence 33456778889999999999999999999 55778888764 4332 2588999999999543
No 52
>PRK08638 threonine dehydratase; Validated
Probab=94.88 E-value=0.065 Score=44.24 Aligned_cols=67 Identities=21% Similarity=0.179 Sum_probs=48.9
Q ss_pred ccccCCCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCCccccc
Q 039995 17 RLSKGLGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGLLGLF 86 (118)
Q Consensus 17 ~~~~g~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGGl~glf 86 (118)
.++.+.-+-.++++..++++++++++|+..+|. .|=+++++.. ....+.+ ++++||.+-|||--.+-
T Consensus 252 ~~~~d~~v~Vsd~ea~~a~~~l~~~~gi~~e~s-gA~~~Aa~~~-~~~~~~~-~~~~vv~v~~Ggn~~~~ 318 (333)
T PRK08638 252 RELVDDIVLVSEDEIRNAMKDLIQRNKVVTEGA-GALATAALLS-GKLDQYI-QNKKVVAIISGGNVDLS 318 (333)
T ss_pred HHhCCeEEEECHHHHHHHHHHHHHHcCCeechh-HHHHHHHHHh-CCccccc-CCCcEEEEECCCCCCHH
Confidence 345566788899999999999999999999994 4555555542 2221222 57899999999877553
No 53
>PRK08206 diaminopropionate ammonia-lyase; Provisional
Probab=94.80 E-value=0.059 Score=45.56 Aligned_cols=71 Identities=11% Similarity=-0.067 Sum_probs=53.3
Q ss_pred hhhhccccCCCcccCCHHHHHHHHHHHH----HhCCccchhhhHHHHHHHHHH--------HHhCCCCCCCCeEEEEecC
Q 039995 13 TRQPRLSKGLGYAINTSEELNFVKDIAA----ATGVVLDPVYSGKAAYGMLND--------MAQNPKKWEGRKVLFVHTG 80 (118)
Q Consensus 13 ~~~l~~~~g~GYG~~t~e~~~~I~~~a~----~eGI~LDPVYTgKa~~gL~~~--------l~~~g~~~~g~rVLfiHTG 80 (118)
+..+.+..+.-.-.+++|..++++.+++ ++||+++|.= |=++++++.. +++.+.+.++++|+.|-||
T Consensus 303 ~~~~~~~~d~~v~VsD~ei~~a~r~La~~~~~~~gi~vepsg-Aa~lAa~~~~~~~~~~~~~~~~~~i~~~~~Vv~iltg 381 (399)
T PRK08206 303 WEILRNCADAFISCPDEVAALGMRILANPLGGDPPIVSGESG-AVGLGALAALMTDPDYQELREKLGLDEDSRVLLISTE 381 (399)
T ss_pred HHHHHHhCCEEEEECHHHHHHHHHHHhcccCCCCCeeecchH-HHHHHHHHHHHhcchhhHHHHhcCCCCCCEEEEEECC
Confidence 3334444555677889999999999996 7899999985 6688888742 2222567778999999999
Q ss_pred Cccc
Q 039995 81 GLLG 84 (118)
Q Consensus 81 Gl~g 84 (118)
|.--
T Consensus 382 G~~d 385 (399)
T PRK08206 382 GDTD 385 (399)
T ss_pred CCCC
Confidence 8753
No 54
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase
Probab=94.57 E-value=0.082 Score=44.45 Aligned_cols=62 Identities=13% Similarity=0.235 Sum_probs=47.8
Q ss_pred cccCCCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCCc
Q 039995 18 LSKGLGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGL 82 (118)
Q Consensus 18 ~~~g~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGGl 82 (118)
++....|..+++|.+++++++++++||+++|-=-+-.++++ . +.+.. ..++++||.|.|+.-
T Consensus 282 ~~~d~~v~Vsd~ea~~a~r~l~~~eGi~vg~ssgA~~~aal-~-~a~~~-~~~~~~IV~v~~d~g 343 (368)
T PLN02556 282 DVMEKVLEVSSEDAVNMARELALKEGLMVGISSGANTVAAL-R-LAKMP-ENKGKLIVTVHPSFG 343 (368)
T ss_pred hhCCeEEEECHHHHHHHHHHHHHHcCCEEecCHHHHHHHHH-H-Hhhhc-cCCcCEEEEEECCCC
Confidence 34567899999999999999999999999998755455554 3 44433 235789999999864
No 55
>TIGR01747 diampropi_NH3ly diaminopropionate ammonia-lyase family. This small subfamily includes diaminopropionate ammonia-lyase from Salmonella typhimurium and a small number of close homologs, about 50 % identical in sequence. The enzyme is a pyridoxal phosphate-binding homodimer homologous to threonine dehydratase (threonine deaminase).
Probab=94.30 E-value=0.099 Score=44.06 Aligned_cols=73 Identities=10% Similarity=-0.051 Sum_probs=56.3
Q ss_pred hhhhhhccccCCCcccCCHHHHHHHHHHHHHh----CCccchhhhHHHHHHHHH--------HHHhCCCCCCCCeEEEEe
Q 039995 11 LMTRQPRLSKGLGYAINTSEELNFVKDIAAAT----GVVLDPVYSGKAAYGMLN--------DMAQNPKKWEGRKVLFVH 78 (118)
Q Consensus 11 ~~~~~l~~~~g~GYG~~t~e~~~~I~~~a~~e----GI~LDPVYTgKa~~gL~~--------~l~~~g~~~~g~rVLfiH 78 (118)
+.|+.+.+..+.....++++..++++.+++.. .|+.||.= |=+++++.. .+++++.+.++++|+.|-
T Consensus 282 ~~~~~~~~~~~~~v~V~D~ei~~A~~~L~~~~g~~~~i~~epag-a~~la~l~~~~~~~~~~~~~~~~~~~~~~~vvvi~ 360 (376)
T TIGR01747 282 ISWEILRNCTSQFISAQDSVAAKGMRVLGAPYGGDPRIISGESG-AVGLGLLAAVMYHPQYQSLMEKLQLDKDAVVLVIS 360 (376)
T ss_pred HHHHHHHhcCCEEEEcCHHHHHHHHHHHhcccCCCCeEeeeCch-HHHHHHHHHHHhCchHHHHHHHcCCCCCCEEEEEe
Confidence 45677888888888889999999999999966 49999975 456666662 233445566689999999
Q ss_pred cCCccc
Q 039995 79 TGGLLG 84 (118)
Q Consensus 79 TGGl~g 84 (118)
|||-..
T Consensus 361 t~gn~d 366 (376)
T TIGR01747 361 TEGDTD 366 (376)
T ss_pred CCCCCC
Confidence 999654
No 56
>PRK07334 threonine dehydratase; Provisional
Probab=94.20 E-value=0.087 Score=44.30 Aligned_cols=66 Identities=17% Similarity=0.116 Sum_probs=51.1
Q ss_pred hhhhhccccCCCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCCc
Q 039995 12 MTRQPRLSKGLGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGL 82 (118)
Q Consensus 12 ~~~~l~~~~g~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGGl 82 (118)
++..+..+.+.-+-.+++|..++++.+++++|++++| =+|=+++++++ +.+ .. ++++||.+-|||-
T Consensus 241 ~~~~~~~~~d~~v~V~d~e~~~a~~~l~~~~gi~v~~-s~a~~~aa~~~-~~~--~~-~~~~vv~i~~ggn 306 (403)
T PRK07334 241 TLEIVRRLVDDILLVSEADIEQAVSLLLEIEKTVVEG-AGAAGLAALLA-YPE--RF-RGRKVGLVLSGGN 306 (403)
T ss_pred HHHHHHHhCCeEEEECHHHHHHHHHHHHHhcCCEEec-hHHHHHHHHHh-Cch--hc-CCCeEEEEECCCC
Confidence 3334445566778889999999999999999999999 55777777764 333 22 5789999999995
No 57
>PRK08813 threonine dehydratase; Provisional
Probab=94.04 E-value=0.095 Score=44.04 Aligned_cols=65 Identities=14% Similarity=0.042 Sum_probs=50.8
Q ss_pred hhhhhccccCCCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCCcccc
Q 039995 12 MTRQPRLSKGLGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGLLGL 85 (118)
Q Consensus 12 ~~~~l~~~~g~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGGl~gl 85 (118)
.+..+.++.+.-+..+++|..++++.+++++|+++|| =+|=++++++. + +++||+.|-|||-..+
T Consensus 248 ~~~i~~~~vd~vv~Vsd~ei~~a~~~l~~~~gl~vE~-aga~alAa~~~-~-------~~~~v~~vlsGgN~d~ 312 (349)
T PRK08813 248 TRRLCSSLLDDVVIVREAELRETLVRLALEEHVIAEG-AGALALAAGRR-V-------SGKRKCAVVSGGNIDA 312 (349)
T ss_pred HHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCcEEEE-cHHHHHHHHHH-h-------CCCCEEEEECCCCCCH
Confidence 3444455666778899999999999999999999999 45777888653 1 3578999999996654
No 58
>PRK06608 threonine dehydratase; Provisional
Probab=93.25 E-value=0.22 Score=41.21 Aligned_cols=59 Identities=15% Similarity=0.207 Sum_probs=47.6
Q ss_pred CCCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCCcc
Q 039995 21 GLGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGLL 83 (118)
Q Consensus 21 g~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGGl~ 83 (118)
.+-+-.+++|..++++.+++.+|+.++|-= |=+++++++ +.+. ..++++||.|-|||.-
T Consensus 252 d~~v~Vsd~e~~~a~~~l~~~~gi~vepss-aa~laa~~~-~~~~--~~~~~~Vv~v~tgg~~ 310 (338)
T PRK06608 252 DDFYLVEEYEIYYWTAWLTHLLKVICEPSS-AINMVAVVN-WLKT--QSKPQKLLVILSGGNI 310 (338)
T ss_pred CCEEEECHHHHHHHHHHHHHHcCcEEchHH-HHHHHHHHh-hchh--hcCCCeEEEEeCCCcc
Confidence 456788899999999999999999999985 668888875 3332 2357899999999864
No 59
>TIGR00263 trpB tryptophan synthase, beta subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. the beta chain contains the functional domain for or the synthesis of tryptophan from indole and serine. The enzyme requires pyridoxal-phosphate as a cofactor. The pyridoxal-P attachment site is contained within the conserved region [LIVM]-x-H-x-G-[STA]-H-K-x-N] [K is the pyridoxal-P attachment site] which is present between residues 90-100 of the model.
Probab=93.25 E-value=0.28 Score=41.27 Aligned_cols=58 Identities=19% Similarity=0.114 Sum_probs=46.4
Q ss_pred CCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecC-Ccc
Q 039995 22 LGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTG-GLL 83 (118)
Q Consensus 22 ~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTG-Gl~ 83 (118)
.-...+++|..++++.++++|||+++|-= |=+++++++ +.+ .+.++++||++-|| |.-
T Consensus 318 ~~v~Vsd~e~~~a~~~la~~egi~~~~ss-aaalaa~~~-~~~--~l~~~~~Vv~i~~g~G~~ 376 (385)
T TIGR00263 318 TYEAITDDEALEAFKLLSRNEGIIPALES-SHALAHLEK-IAP--TLPKDQIVVVNLSGRGDK 376 (385)
T ss_pred EEEEECHHHHHHHHHHHHHhcCCeechHH-HHHHHHHHH-HHH--hCCCCCeEEEEeCCCCcC
Confidence 34778899999999999999999999986 557778775 443 25568899999999 654
No 60
>PRK09225 threonine synthase; Validated
Probab=93.19 E-value=0.19 Score=43.80 Aligned_cols=53 Identities=15% Similarity=0.194 Sum_probs=42.6
Q ss_pred CCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCC
Q 039995 22 LGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGG 81 (118)
Q Consensus 22 ~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGG 81 (118)
.++...++|.+++|+++++++|+++||- ||=+++++.+ .. .++.++|++=||-
T Consensus 358 ~a~~vsD~ei~~ai~~~~~~~G~~~dPh-tAva~aa~~~-~~-----~~~~~~V~l~Ta~ 410 (462)
T PRK09225 358 SAGSVSDEETLATIREVYEEYGYLIDPH-TAVAYKAARE-YL-----DPGEPGVVLSTAH 410 (462)
T ss_pred eEEEECHHHHHHHHHHHHHhCCEEECch-HHHHHHHHHH-hh-----CCCCCEEEEecCC
Confidence 4567788999999999999999999996 6888888864 32 2456788888884
No 61
>TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase. This family consists of D-serine ammonia-lyase (EC 4.3.1.18), a pyridoxal-phosphate enzyme that converts D-serine to pyruvate and NH3. This enzyme is also called D-serine dehydratase and D-serine deaminase and was previously designated EC 4.2.1.14. It is homologous to an enzyme that acts on threonine and may itself act weakly on threonine.
Probab=93.12 E-value=0.24 Score=42.82 Aligned_cols=68 Identities=15% Similarity=0.164 Sum_probs=49.0
Q ss_pred hhhccccCCCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhC--------CC---CCCCCeEEEEecCCc
Q 039995 14 RQPRLSKGLGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQN--------PK---KWEGRKVLFVHTGGL 82 (118)
Q Consensus 14 ~~l~~~~g~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~--------g~---~~~g~rVLfiHTGGl 82 (118)
..+.+....-+-.++++..++++.+++++||+++|-= |=.++++.. +.++ +. +..+.+.+.|-|||.
T Consensus 343 ~~~~~~vd~vv~VsD~ei~~a~~~L~~~egi~vEpSs-aa~laa~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~tg~~ 420 (431)
T TIGR02035 343 RLMEPLLSGIYTVDDYTLYDLLRILAESEGKRLEPSA-LAGMEGPVR-LLKYEDSYRYIEGRIGKNLNNATHVVWATGGG 420 (431)
T ss_pred HHHHHhCCeEEEECHHHHHHHHHHHHHHcCCeEcHHH-HHHHHHHHH-HHhhhhhHHHHcCccccccCCCeEEEEecCCC
Confidence 3344455667788999999999999999999999974 556777664 3332 11 113668899999985
Q ss_pred c
Q 039995 83 L 83 (118)
Q Consensus 83 ~ 83 (118)
.
T Consensus 421 ~ 421 (431)
T TIGR02035 421 M 421 (431)
T ss_pred C
Confidence 3
No 62
>PLN00011 cysteine synthase
Probab=92.88 E-value=0.31 Score=39.84 Aligned_cols=55 Identities=22% Similarity=0.383 Sum_probs=42.6
Q ss_pred cccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCC
Q 039995 24 YAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGG 81 (118)
Q Consensus 24 YG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGG 81 (118)
.+.++++.+++++++++++||++||.= |=++++++. +.+... .++++||.|-|+|
T Consensus 246 v~V~d~e~~~a~~~l~~~~Gi~~~~ss-ga~laaa~~-~~~~~~-~~~~~vv~i~~d~ 300 (323)
T PLN00011 246 IQVTGEEAIETAKLLALKEGLLVGISS-GAAAAAALK-VAKRPE-NAGKLIVVIFPSG 300 (323)
T ss_pred EEECHHHHHHHHHHHHHhcCCeEcccH-HHHHHHHHH-HHHhcc-CCCCeEEEEECCC
Confidence 478899999999999999999999986 567777775 333222 3577899988554
No 63
>PRK06450 threonine synthase; Validated
Probab=91.41 E-value=0.39 Score=39.85 Aligned_cols=59 Identities=15% Similarity=0.174 Sum_probs=46.8
Q ss_pred hhhhhccccCCCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCC
Q 039995 12 MTRQPRLSKGLGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGG 81 (118)
Q Consensus 12 ~~~~l~~~~g~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGG 81 (118)
.++.+++. |.....+++|..++++++++ +||.++|.= |=+++++.+ + ++++||.+-||.
T Consensus 275 ~~~~i~~~-g~~v~V~d~ei~~a~~~La~-~Gi~vepss-aaalAa~~~-l-------~~~~vv~vltG~ 333 (338)
T PRK06450 275 MVKALSEY-GECIVVSDNEIVEAWKELAK-KGLLVEYSS-ATVYAAYKK-Y-------SVNDSVLVLTGS 333 (338)
T ss_pred HHHHHHhc-CcEEEECHHHHHHHHHHHHH-cCCEEChhH-HHHHHHHHH-C-------CCCCEEEEeCCC
Confidence 45556665 77889999999999999987 699999986 568888764 3 236899999995
No 64
>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase. Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate.
Probab=91.27 E-value=0.43 Score=40.50 Aligned_cols=72 Identities=8% Similarity=-0.082 Sum_probs=53.1
Q ss_pred hhhhhccccCCCcccCCHHHHHHHHHHHH----HhCCccchhhhHHHHHHHHH--------HHHhCCCCCCCCeEEEEec
Q 039995 12 MTRQPRLSKGLGYAINTSEELNFVKDIAA----ATGVVLDPVYSGKAAYGMLN--------DMAQNPKKWEGRKVLFVHT 79 (118)
Q Consensus 12 ~~~~l~~~~g~GYG~~t~e~~~~I~~~a~----~eGI~LDPVYTgKa~~gL~~--------~l~~~g~~~~g~rVLfiHT 79 (118)
.+..+.++.+.-.-.+++|..++++.+++ .+++..+|.= |=+++++.. .+.+++.+.++++|+.|-|
T Consensus 302 ~~~~~~~~~d~~v~VsD~ei~~a~r~La~~~~~~~~~~~epsg-a~~~Aalaa~~~~~~~~~~~~~~~~~~~~~vv~i~t 380 (396)
T TIGR03528 302 GWEILRDYASQFISCPDWVAAKGMRILGNPLKGDPRVISGESG-AVGTGLLAAVMTNPDYKELREKLQLDKNSRVLLIST 380 (396)
T ss_pred HHHHHHHhCCeEEEECHHHHHHHHHHHhcccCCCCceeecCcH-HHHHHHHHHHHhCchhHHHHHhcCCCCCCEEEEEEC
Confidence 45556667777788999999999999998 6799999975 445544422 1333344556899999999
Q ss_pred CCccc
Q 039995 80 GGLLG 84 (118)
Q Consensus 80 GGl~g 84 (118)
||-..
T Consensus 381 ggn~d 385 (396)
T TIGR03528 381 EGDTD 385 (396)
T ss_pred CCCCC
Confidence 99764
No 65
>PLN02565 cysteine synthase
Probab=90.74 E-value=0.74 Score=37.82 Aligned_cols=57 Identities=18% Similarity=0.271 Sum_probs=46.0
Q ss_pred CcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCCc
Q 039995 23 GYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGL 82 (118)
Q Consensus 23 GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGGl 82 (118)
-...++++..++++.+++++|+.++|-= |=++++++. +.+.+. .++++||.+-|++-
T Consensus 243 ~v~V~d~ea~~a~~~l~~~~gi~vg~ss-ga~laaa~~-~a~~~~-~~~~~vV~v~~d~G 299 (322)
T PLN02565 243 VVQVSSDEAIETAKLLALKEGLLVGISS-GAAAAAAIK-IAKRPE-NAGKLIVVIFPSFG 299 (322)
T ss_pred EEEECHHHHHHHHHHHHHHhCcEEeccH-HHHHHHHHH-HHHhcC-CCCCeEEEEECCCc
Confidence 4667789999999999999999999985 668888876 554443 46789999999864
No 66
>PRK13028 tryptophan synthase subunit beta; Provisional
Probab=89.89 E-value=0.83 Score=39.16 Aligned_cols=56 Identities=14% Similarity=0.134 Sum_probs=44.7
Q ss_pred cccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecC-Ccc
Q 039995 24 YAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTG-GLL 83 (118)
Q Consensus 24 YG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTG-Gl~ 83 (118)
...+++|.+++++.++++|||+..|-= |=+++++++ +.+ .+.++++||.+-|| |.-
T Consensus 332 v~VtD~eal~a~~~La~~eGIi~~~~s-a~alA~a~~-~a~--~l~~~~~VVv~lsG~G~k 388 (402)
T PRK13028 332 VTATDEEALDAFFLLSRTEGIIPALES-SHAVAYAIK-LAP--ELSKDETILVNLSGRGDK 388 (402)
T ss_pred EEECHHHHHHHHHHHHHhcCCeeccHH-HHHHHHHHH-hhh--hcCCCCeEEEEECCCCcc
Confidence 667889999999999999999988875 557777765 443 35578899999999 543
No 67
>cd01560 Thr-synth_2 Threonine synthase catalyzes the final step of threonine biosynthesis. The conversion of O-phosphohomoserine into threonine and inorganic phosphate is pyridoxal 5'-phosphate dependent. The Thr-synth_1 CD includes members from higher plants, cyanobacteria, archaebacteria and eubacterial groups. This CD, Thr-synth_2, includes enzymes from fungi and eubacterial groups, as well as, metazoan threonine synthase-like proteins.
Probab=89.75 E-value=0.61 Score=40.64 Aligned_cols=55 Identities=15% Similarity=0.243 Sum_probs=44.1
Q ss_pred CCCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCC
Q 039995 21 GLGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGG 81 (118)
Q Consensus 21 g~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGG 81 (118)
..++...++|.+++|+.+++++|+++||- ||=+++++.+ ..+. ++.++|++=||-
T Consensus 360 f~a~~vsD~ei~~~i~~~~~~~G~~vdPh-tAva~aa~~~-~~~~----~~~~~V~l~Ta~ 414 (460)
T cd01560 360 FSSGSVSDEETLETIREVYEETGYLIDPH-TAVGVRAAER-VRKS----PGTPGVVLSTAH 414 (460)
T ss_pred ceEEEECHHHHHHHHHHHHHhcCEEECch-HHHHHHHHHH-HHhc----cCCCEEEEecCC
Confidence 35677899999999999999999999996 6888999865 4432 345788888884
No 68
>PLN02356 phosphateglycerate kinase
Probab=89.00 E-value=0.86 Score=39.51 Aligned_cols=59 Identities=10% Similarity=0.139 Sum_probs=46.8
Q ss_pred cCCCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCCc
Q 039995 20 KGLGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGL 82 (118)
Q Consensus 20 ~g~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGGl 82 (118)
..+-+-.+++|.+++++++++++|++++|.= |=+++++++ +.+. ..++++||.|-||.-
T Consensus 335 vD~~v~Vsd~ea~~a~r~L~~~~Gl~vg~Ss-aa~laaa~~-la~~--~~~g~~VV~Il~d~G 393 (423)
T PLN02356 335 LDGAFRGTDKEAVEMSRYLLKNDGLFVGSSS-AMNCVGAVR-VAQS--LGPGHTIVTILCDSG 393 (423)
T ss_pred CCcEEEECHHHHHHHHHHHHHHCCeeEeECH-HHHHHHHHH-HHHH--hCCCCeEEEEECCCC
Confidence 4444567888999999999999999999985 778888875 4432 446889999999943
No 69
>PRK11761 cysM cysteine synthase B; Provisional
Probab=88.14 E-value=1.7 Score=35.14 Aligned_cols=56 Identities=14% Similarity=0.159 Sum_probs=44.3
Q ss_pred CCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCCc
Q 039995 22 LGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGL 82 (118)
Q Consensus 22 ~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGGl 82 (118)
.-...+++|..++++.+++.+||.++|-= |=++++++. +.+. . ++++||.|-|+.-
T Consensus 230 ~~v~V~d~e~~~a~~~l~~~~gi~ve~ss-ga~laaa~~-~~~~--~-~~~~vV~v~~d~g 285 (296)
T PRK11761 230 RVLDVSQQEAENTMRRLAREEGIFCGVSS-GGAVAAALR-IARE--N-PNAVIVAIICDRG 285 (296)
T ss_pred EEEEECHHHHHHHHHHHHHHhCceEchhH-HHHHHHHHH-HHHH--C-CCCeEEEEECCCC
Confidence 44677889999999999999999999985 567788775 4432 2 4679999998864
No 70
>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia. D-serine dehydratase serves as a detoxifying enzyme in most E. coli strains where D-serine is a competitive antagonist of beta-alanine in the biosynthetic pathway to pentothenate and coenzyme A. D-serine dehydratase is different from other pyridoxal-5'-phosphate-dependent enzymes in that it catalyzes alpha, beta-elimination reactions on amino acids.
Probab=87.06 E-value=1.9 Score=37.01 Aligned_cols=68 Identities=12% Similarity=0.151 Sum_probs=49.7
Q ss_pred hhhhccccCCCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCC---------CCCCCeEEEEecCCc
Q 039995 13 TRQPRLSKGLGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPK---------KWEGRKVLFVHTGGL 82 (118)
Q Consensus 13 ~~~l~~~~g~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~---------~~~g~rVLfiHTGGl 82 (118)
+..+.+..+.-.-.+++|..++++.+++++||+++|-= |=+++++++ +.++.. .-.+.+-+.|-|||.
T Consensus 324 ~~~~~~~vd~~v~Vsd~ei~~a~r~La~~~gi~vepSg-Aa~lAAl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (404)
T cd06447 324 GKLMEPLLSGIYTVEDDELYRLLAMLKDSENIEVEPSA-AAGFTGPAQ-VLSEAEGKRYVRLGYRMENATHIVWATGGS 400 (404)
T ss_pred HHHHHHhCCcEEEECHHHHHHHHHHHHHHcCcEEeHHH-HHHHHHHHH-HHHhhhHHHhcCccccccCceEEEEccCCC
Confidence 44455666778889999999999999999999999985 668888876 433211 112344577888885
No 71
>PRK04346 tryptophan synthase subunit beta; Validated
Probab=86.84 E-value=1.6 Score=37.43 Aligned_cols=56 Identities=16% Similarity=0.146 Sum_probs=41.7
Q ss_pred cccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecC-Ccc
Q 039995 24 YAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTG-GLL 83 (118)
Q Consensus 24 YG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTG-Gl~ 83 (118)
...+++|.+++++.++++|||+.-+-= |-+++++++ +.+ .+.++++||.+-|| |.-
T Consensus 328 v~VtD~eal~a~~~L~~~eGIi~~~es-a~AlA~a~k-la~--~l~~~~~Vvv~lsGrG~k 384 (397)
T PRK04346 328 VSITDDEALEAFQLLSRLEGIIPALES-SHALAYALK-LAP--TLGKDQIIVVNLSGRGDK 384 (397)
T ss_pred EEECHHHHHHHHHHHHHHcCCEeccHH-HHHHHHHHH-hhh--hcCCCCeEEEEeCCCCcc
Confidence 467889999999999999999933332 446777764 443 35568899999999 643
No 72
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=85.61 E-value=1.9 Score=38.70 Aligned_cols=58 Identities=17% Similarity=0.083 Sum_probs=46.0
Q ss_pred CCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecC-Ccc
Q 039995 22 LGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTG-GLL 83 (118)
Q Consensus 22 ~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTG-Gl~ 83 (118)
.-...+++|.+++++.+++.|||...|-= |=+++++++ +. +.+.++++||.+-|| |.-
T Consensus 538 ~~v~Vtd~ea~~a~~~La~~eGi~~~~ss-a~alA~~~~-~~--~~~~~~~~Vvv~lsG~G~k 596 (610)
T PRK13803 538 IYTSVTDEEALDAFKLLAKLEGIIPALES-SHALAYLKE-GR--KKFKKKDIVIVNLSGRGDK 596 (610)
T ss_pred EEEEECHHHHHHHHHHHHHHcCCccCcHH-HHHHHHHHH-hc--hhcCCCCeEEEEeCCCCcC
Confidence 34678889999999999999999999875 557888765 33 246668899999999 644
No 73
>PLN02618 tryptophan synthase, beta chain
Probab=84.65 E-value=2.6 Score=36.33 Aligned_cols=54 Identities=17% Similarity=0.251 Sum_probs=43.6
Q ss_pred cccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCC
Q 039995 24 YAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGG 81 (118)
Q Consensus 24 YG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGG 81 (118)
...+++|.++++++++++|||+..+-= |-+++++.+ +.+ .+.++++||.+-||.
T Consensus 341 v~VtD~Eal~a~~~La~~eGIi~~~sS-a~a~a~a~~-~a~--~l~~~~~iVv~lsgr 394 (410)
T PLN02618 341 YSVTDEEALEAFQRLSRLEGIIPALET-SHALAYLEK-LCP--TLPDGTKVVVNCSGR 394 (410)
T ss_pred EEECHHHHHHHHHHHHHHcCceEchhH-HHHHHHHHH-HhH--hcCCCCEEEEEeCCC
Confidence 457889999999999999999988875 568888775 544 366788999998884
No 74
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=83.15 E-value=4 Score=32.81 Aligned_cols=54 Identities=17% Similarity=0.207 Sum_probs=42.9
Q ss_pred CcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCC
Q 039995 23 GYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGG 81 (118)
Q Consensus 23 GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGG 81 (118)
-+..+++|..++++.+++++||+.+|-= |=+++++++ +.+. + ++++||.|-++.
T Consensus 227 ~v~V~d~e~~~a~~~l~~~~gi~~g~ss-ga~laa~~~-~~~~--~-~~~~vv~v~~d~ 280 (290)
T TIGR01138 227 VLDIHQRDAENTMRELAVREGIFCGVSS-GGAVAAALR-LARE--L-PDAVVVAIICDR 280 (290)
T ss_pred EEEECHHHHHHHHHHHHHHhCceEcHhH-HHHHHHHHH-HHHH--C-CCCeEEEEECCC
Confidence 4567789999999999999999999985 668888875 4432 4 467899888874
No 75
>PLN03013 cysteine synthase
Probab=81.37 E-value=3.5 Score=35.91 Aligned_cols=57 Identities=21% Similarity=0.281 Sum_probs=41.9
Q ss_pred ccCCCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEe
Q 039995 19 SKGLGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVH 78 (118)
Q Consensus 19 ~~g~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiH 78 (118)
+...-+..+++|..++++++++++||+++|-= |-++++.++ +.+.. ..++++||.+.
T Consensus 347 ~vD~vv~VsD~ea~~a~r~La~~eGi~vG~SS-GAalaAalk-la~~~-~~~g~~IVv~i 403 (429)
T PLN03013 347 IMDEVIAISSEEAIETAKQLALKEGLMVGISS-GAAAAAAIK-VAKRP-ENAGKLIAVSL 403 (429)
T ss_pred hccEEEEECHHHHHHHHHHHHHHcCCEEecCH-HHHHHHHHH-Hhhhc-cCCCCEEEEEE
Confidence 34455778889999999999999999999975 667777775 44322 22577775555
No 76
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=80.92 E-value=4.2 Score=34.66 Aligned_cols=70 Identities=16% Similarity=0.200 Sum_probs=54.7
Q ss_pred hhhhhccccCCCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCCcccc
Q 039995 12 MTRQPRLSKGLGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGLLGL 85 (118)
Q Consensus 12 ~~~~l~~~~g~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGGl~gl 85 (118)
.+..+.++...-.-..+.+..++|+.+.+.+.|..||.= +=++++++....+. .+|++|+.|-+||-..+
T Consensus 248 tf~i~~~~vd~~v~V~e~ei~~am~~l~~~~~iI~EpaG-AlalAal~~~~~~~---~~g~~v~~ilSGgN~d~ 317 (347)
T COG1171 248 TFEILRELVDDIVLVDEDEICAAMRDLFERTKIIAEPAG-ALALAALLAGKIEP---LQGKTVVVILSGGNIDF 317 (347)
T ss_pred HHHHHHHcCCcEEEECHHHHHHHHHHHHhcCCeeccccH-HHHHHHHHhhhhhh---cCCCeEEEEecCCCCCH
Confidence 445555666677888899999999999999999999975 56888887644432 35777999999997654
No 77
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=79.43 E-value=5.1 Score=32.69 Aligned_cols=52 Identities=25% Similarity=0.294 Sum_probs=32.5
Q ss_pred CCHHHHHHHHHHHHHhC------------------------CccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEec
Q 039995 27 NTSEELNFVKDIAAATG------------------------VVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHT 79 (118)
Q Consensus 27 ~t~e~~~~I~~~a~~eG------------------------I~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHT 79 (118)
.++.++++|+.+|+++| +..||.||...+..++..-++. -..+|..+.|-.|
T Consensus 75 iDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDPPyT~~G~~LFlsRgi~~-Lk~~g~~gy~~~~ 150 (243)
T PF01861_consen 75 IDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDPPYTPEGLKLFLSRGIEA-LKGEGCAGYFGFT 150 (243)
T ss_dssp S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE---SSHHHHHHHHHHHHHT-B-STT-EEEEEE-
T ss_pred cCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCCCCCHHHHHHHHHHHHHH-hCCCCceEEEEEe
Confidence 58899999999999988 5689999998888877644442 2224545544443
No 78
>COG1350 Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) [General function prediction only]
Probab=79.36 E-value=6.9 Score=34.12 Aligned_cols=65 Identities=23% Similarity=0.308 Sum_probs=47.3
Q ss_pred CCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecC-CcccccccHHHh
Q 039995 27 NTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTG-GLLGLFDKVDQM 92 (118)
Q Consensus 27 ~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTG-Gl~glf~~~~~~ 92 (118)
.-.|..++...||+.|||.--|- |+-|+.+.++...+..+-.....|+|=-+| |++-+-+|.+-+
T Consensus 361 ~Q~Evfeaa~lFa~~EGiVPAPE-saHAi~~aid~A~~a~~~geekvI~fnlSGHGllDL~~Y~~yl 426 (432)
T COG1350 361 DQEEVFEAAVLFARTEGIVPAPE-SAHAIKAAIDEALKAREEGEEKVILFNLSGHGLLDLSAYDKYL 426 (432)
T ss_pred ChHHHHHHHHHHHHhcCCccCCc-chhhHHHHHHHHHhccccCceeEEEEeccCccccchhhHHHHh
Confidence 46789999999999999999986 578888888766554332223456777788 677776665544
No 79
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=77.70 E-value=7.8 Score=35.79 Aligned_cols=57 Identities=19% Similarity=0.179 Sum_probs=42.5
Q ss_pred cccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCC-CCCeEEEEecCC
Q 039995 24 YAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKW-EGRKVLFVHTGG 81 (118)
Q Consensus 24 YG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~-~g~rVLfiHTGG 81 (118)
...+++|.+++.+.++++|||+.-|-- |-++++.++...+-+.-. ++++||++-||-
T Consensus 604 ~~vtD~eal~a~~~La~~EGIipa~eS-~hAva~a~~~a~~~~~~~~~~~~Vv~~lsg~ 661 (695)
T PRK13802 604 SWATDEEAMNAFKDLCETEGIIPAIES-SHAVAGAYKAAADLKAKGYEHPVMIVNISGR 661 (695)
T ss_pred EEECHHHHHHHHHHHHHHcCccccchH-HHHHHHHHHHHHhcccccCCCCEEEEEECCC
Confidence 456789999999999999999999975 668888886433211100 145899999994
No 80
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=76.45 E-value=7 Score=32.69 Aligned_cols=53 Identities=17% Similarity=0.278 Sum_probs=40.9
Q ss_pred CCCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEE
Q 039995 21 GLGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFV 77 (118)
Q Consensus 21 g~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfi 77 (118)
-.=+-.++++..+.++.++++|||+.-+- ||-++++.++ +.+. .+++++||.|
T Consensus 237 D~v~~V~d~~A~~~~r~La~~eGilvG~S-sGA~~~aa~~-~a~~--~~~g~~IVti 289 (300)
T COG0031 237 DEVIRVSDEEAIATARRLAREEGLLVGIS-SGAALAAALK-LAKE--LPAGKTIVTI 289 (300)
T ss_pred ceEEEECHHHHHHHHHHHHHHhCeeeccc-HHHHHHHHHH-HHHh--cCCCCeEEEE
Confidence 33466789999999999999999999886 5778888775 5542 4457788765
No 81
>PF01471 PG_binding_1: Putative peptidoglycan binding domain; InterPro: IPR002477 This entry represents peptidoglycan binding domain (PGBD), as well as related domains that share the same structure. PGBD may have a general peptidoglycan binding function, has a core structure consisting of a closed, three-helical bundle with a left-handed twist. It is found at the N or C terminus of a variety of enzymes involved in bacterial cell wall degradation [, , ]. Examples are: Muramoyl-pentapeptide carboxypeptidase (3.4.17.8 from EC) N-acetylmuramoyl-L-alanine amidase cwlA precursor (cell wall hydrolase, autolysin, 3.5.1.28 from EC) Autolytic lysozyme (1,4-beta-N-acetylmuramidase, autolysin, 3.2.1.17 from EC) Membrane-bound lytic murein transglycosylase B Zinc-containing D-alanyl-D-alanine-cleaving carboxypeptidase, VanX []. Many of the proteins having this domain are as yet uncharacterised. However, some are known to belong to MEROPS peptidase family M15 (clan MD), subfamily M15A metallopeptidases. A number of the proteins belonging to subfamily M15A are non-peptidase homologues as they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. Eukaryotic enzymes can contain structurally similar PGBD-like domains. Matrix metalloproteinases (MMP), which catalyse extracellular matrix degradation, have N-terminal domains that resemble PGBD. Examples are gelatinase A (MMP-2), which degrades type IV collagen [], stromelysin-1 (MMP-3), which plays a role in arthritis and tumour invasion [, ], and gelatinase B (MMP-9) secreted by neutrophils as part of the innate immune defence mechanism []. Several MMPs are implicated in cancer progression, since degradation of the extracellular matrix is an essential step in the cascade of metastasis [].; GO: 0008152 metabolic process; PDB: 1L6J_A 3BKH_A 3BKV_A 1GXD_A 1EAK_D 1CK7_A 1SLM_A 1LBU_A 1SU3_B.
Probab=67.97 E-value=9.7 Score=22.87 Aligned_cols=35 Identities=20% Similarity=0.148 Sum_probs=28.4
Q ss_pred cccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHH
Q 039995 24 YAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGM 58 (118)
Q Consensus 24 YG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL 58 (118)
=|..++++.++|+.|-+..|+..|=+...+.+.+|
T Consensus 23 ~g~~~~~t~~Av~~fQ~~~gL~~tG~~d~~T~~~L 57 (57)
T PF01471_consen 23 DGIFDPETREAVKAFQKANGLPVTGVVDPETWEAL 57 (57)
T ss_dssp TSBSHHHHHHHHHHHHHHTTS-SSSSBCHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHcCcCCCCccCHHHHhcC
Confidence 37788999999999999999999988877766553
No 82
>PF08541 ACP_syn_III_C: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ; InterPro: IPR013747 This domain is found on 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 2.3.1.41 from EC, the enzyme responsible for initiating the chain of reactions of the fatty acid synthase in plants and bacteria. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008610 lipid biosynthetic process; PDB: 3IL3_A 1ZOW_C 3GWE_B 3GWA_B 1UB7_B 3LED_B 2EBD_A 1HNJ_A 2EFT_B 1HN9_B ....
Probab=61.34 E-value=42 Score=21.73 Aligned_cols=48 Identities=19% Similarity=0.279 Sum_probs=34.7
Q ss_pred HHHHHHHHHhCCccchhh----------hHHHHHHHHHHHHhCCCCCCCCeEEEEecCC
Q 039995 33 NFVKDIAAATGVVLDPVY----------SGKAAYGMLNDMAQNPKKWEGRKVLFVHTGG 81 (118)
Q Consensus 33 ~~I~~~a~~eGI~LDPVY----------TgKa~~gL~~~l~~~g~~~~g~rVLfiHTGG 81 (118)
..++.+++.-||+-|.++ ++-.+..|.+ ..+.+.+.+|.+|+++=.|.
T Consensus 22 ~~~~~~~~~lgi~~~~~~~~~~~~Gn~~sa~~~~~L~~-~~~~g~~~~Gd~vl~~~~G~ 79 (90)
T PF08541_consen 22 KILDSIAKRLGIPPERFPDNLAEYGNTGSASIPINLAD-ALEEGRIKPGDRVLLVGFGA 79 (90)
T ss_dssp HHHHHHHHHHTS-GGGBE-THHHH-B-GGGHHHHHHHH-HHHTTSSCTTEEEEEEEEET
T ss_pred HHHHHHHHHcCCcHHHHHHHHhccCcchhhhHHHHHHH-HHHcCCCCCCCEEEEEEEEh
Confidence 455667777888888764 4556777764 66667899999999997774
No 83
>PRK02308 uvsE putative UV damage endonuclease; Provisional
Probab=57.59 E-value=38 Score=27.92 Aligned_cols=61 Identities=15% Similarity=0.155 Sum_probs=42.4
Q ss_pred CcccCCHHHHHHHHHHHHHhCCcc-------------chhhhHHHHHHHHHHHHhCCCCC-CCCeEEEEecCCcc
Q 039995 23 GYAINTSEELNFVKDIAAATGVVL-------------DPVYSGKAAYGMLNDMAQNPKKW-EGRKVLFVHTGGLL 83 (118)
Q Consensus 23 GYG~~t~e~~~~I~~~a~~eGI~L-------------DPVYTgKa~~gL~~~l~~~g~~~-~g~rVLfiHTGGl~ 83 (118)
.+-...++.++.+.+++++.||.+ +|-=.-|++..|...+....... +.+..|.+|.||..
T Consensus 84 ~~~~~~~~~~~~~g~~~~~~~irls~Hp~y~inL~S~~~ev~e~Si~~L~~~~~~~~~lG~~~~~~vViHpG~~~ 158 (303)
T PRK02308 84 DYIEPFKEELREIGEFIKEHNIRLSFHPDQFVVLNSPKPEVVENSIKDLEYHAKLLDLMGIDDSSKINIHVGGAY 158 (303)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCeeccChhhhcCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCccC
Confidence 455677889999999999999987 55545677777776554322231 11248999999964
No 84
>TIGR00629 uvde UV damage endonuclease UvdE. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=57.21 E-value=29 Score=29.10 Aligned_cols=73 Identities=19% Similarity=0.221 Sum_probs=43.1
Q ss_pred CCHHHHHHHHHHHHHhCCcc-------------chhhhHHHHHHHHHHHHh---CCCCC-CC-CeEEEEecCCccccccc
Q 039995 27 NTSEELNFVKDIAAATGVVL-------------DPVYSGKAAYGMLNDMAQ---NPKKW-EG-RKVLFVHTGGLLGLFDK 88 (118)
Q Consensus 27 ~t~e~~~~I~~~a~~eGI~L-------------DPVYTgKa~~gL~~~l~~---~g~~~-~g-~rVLfiHTGGl~glf~~ 88 (118)
.-.+.++.|.+++++.||.| +|--..+++.-|....+- =|.-+ -| ..++.+|.||..| +.
T Consensus 91 ~~~~~l~~iG~~a~~~~iRLS~Hp~qfi~LnS~~~evv~~Si~~L~~ha~~l~~mg~~~~~~~~~~iviH~Gg~~g--dk 168 (312)
T TIGR00629 91 FAQKELREIGELAKTHQHRLTFHPGQFTQFTSPRESVVKSAIRDLAYHDEMLSAMKLAEQLNKDAVIIIHIGGAFG--NK 168 (312)
T ss_pred HHHHHHHHHHHHHHHcCeEEEECCCccccCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccCCCceEEEccCcCCC--CH
Confidence 34467888999999999876 455556666655432211 01000 01 2689999999864 44
Q ss_pred HHHhhHhhccccc
Q 039995 89 VDQMAPLLKNWSR 101 (118)
Q Consensus 89 ~~~~~~~~~~~~~ 101 (118)
.+.++...++|++
T Consensus 169 ~~alerf~~n~~~ 181 (312)
T TIGR00629 169 DTTLARFHQNYKR 181 (312)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444455554
No 85
>KOG1251 consensus Serine racemase [Signal transduction mechanisms; Amino acid transport and metabolism]
Probab=57.17 E-value=21 Score=30.09 Aligned_cols=68 Identities=16% Similarity=0.066 Sum_probs=50.5
Q ss_pred hhhhccccCCCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCCcccc
Q 039995 13 TRQPRLSKGLGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGLLGL 85 (118)
Q Consensus 13 ~~~l~~~~g~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGGl~gl 85 (118)
|-+|.|+...=.-...+|+.++++.+++.--+.+||+= +=.|+|.+-.-.+. ..+||..|-+||---+
T Consensus 246 ~pIir~~vddi~Tv~e~Ei~~~lk~~~ermK~~vEPTa-~lgfAavl~~k~~~----~~K~igIiLsGGNVD~ 313 (323)
T KOG1251|consen 246 WPIIRDLVDDILTVSEDEIKEALKLIWERMKVVVEPTA-ALGFAAVLSHKFAL----NIKRIGIILSGGNVDL 313 (323)
T ss_pred hHHHHHHhhhheeecHHHHHHHHHHHHHHHheeeccch-hHHHHHHHhhhHHh----ccCceEEEEeCCcccc
Confidence 44555555555677889999999999999999999986 56777766322221 3789999999996554
No 86
>cd01469 vWA_integrins_alpha_subunit Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration. Integrins consist of an alpha and a beta sub-unit. Each sub-unit has a large extracellular portion, a single transmembrane segment and a short cytoplasmic domain. The N-terminal domains of the alpha and beta subunits associate to form the integrin headpiece, which contains the ligand binding site, whereas the C-terminal segments traverse the plasma membrane and mediate interaction with the cytoskeleton and with signalling proteins.The VWA domains present in the alpha subunits of integrins seem to be a chordate specific radiation of the gene family being found only in vertebrates. They mediate protein-protein interactions.
Probab=51.68 E-value=37 Score=24.82 Aligned_cols=52 Identities=27% Similarity=0.325 Sum_probs=34.9
Q ss_pred CHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHH--HhCCCCCCCCeEEEEecCCcc
Q 039995 28 TSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDM--AQNPKKWEGRKVLFVHTGGLL 83 (118)
Q Consensus 28 t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l--~~~g~~~~g~rVLfiHTGGl~ 83 (118)
.+++.++++.+.+..| .++|++++....+.+ .+.|..+...+|+++-|-|..
T Consensus 62 ~~~~~~~i~~~~~~~g----~T~~~~AL~~a~~~l~~~~~g~R~~~~kv~illTDG~~ 115 (177)
T cd01469 62 KEEPLSLVKHISQLLG----LTNTATAIQYVVTELFSESNGARKDATKVLVVITDGES 115 (177)
T ss_pred HHHHHHHHHhCccCCC----CccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEeCCCC
Confidence 4566777776555444 389999998777655 233444456788888898864
No 87
>TIGR00334 5S_RNA_mat_M5 ribonuclease M5. This family of orthologous proteins shows a weak but significant similarity to the central region of the DnaG-type DNA primase. The region of similarity is termed the Toprim (topoisomerase-primase) domain and is also shared by RecR, OLD family nucleases, and type IA and II topoisomerases.
Probab=49.94 E-value=23 Score=27.55 Aligned_cols=71 Identities=21% Similarity=0.395 Sum_probs=49.5
Q ss_pred CCCcccCCHHHHHHHHHHHHHhC--CccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEe------cCCccccc-ccHHH
Q 039995 21 GLGYAINTSEELNFVKDIAAATG--VVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVH------TGGLLGLF-DKVDQ 91 (118)
Q Consensus 21 g~GYG~~t~e~~~~I~~~a~~eG--I~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiH------TGGl~glf-~~~~~ 91 (118)
=.|++. +++.++.|+..++..| |++||=|.|+-....+.+ .+ |+.+=.|+. .+|-.|+= +..+.
T Consensus 28 T~Gs~i-~~~~i~~i~~~~~~rgVIIfTDpD~~GekIRk~i~~-----~v-p~~khafi~~~~a~~~~~~iGVE~As~e~ 100 (174)
T TIGR00334 28 TNGSAL-KDETINLIKKAQKKQGVIILTDPDFPGEKIRKKIEQ-----HL-PGYENCFIPKHLAKPNKKKIGVEEASVEA 100 (174)
T ss_pred ECCCcc-CHHHHHHHHHHhhcCCEEEEeCCCCchHHHHHHHHH-----HC-CCCeEEeeeHHhcCcCCCCcccCCCCHHH
Confidence 356663 9999999999999999 578999999998886642 24 455667777 23445552 34556
Q ss_pred hhHhhcc
Q 039995 92 MAPLLKN 98 (118)
Q Consensus 92 ~~~~~~~ 98 (118)
+..++.+
T Consensus 101 I~~AL~~ 107 (174)
T TIGR00334 101 IIAALEN 107 (174)
T ss_pred HHHHHHH
Confidence 6666644
No 88
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=48.66 E-value=27 Score=29.96 Aligned_cols=34 Identities=24% Similarity=0.250 Sum_probs=29.0
Q ss_pred CCHHHHHHHHHHHHHhCCc-------------------------cchhhhHHHHHHHHH
Q 039995 27 NTSEELNFVKDIAAATGVV-------------------------LDPVYSGKAAYGMLN 60 (118)
Q Consensus 27 ~t~e~~~~I~~~a~~eGI~-------------------------LDPVYTgKa~~gL~~ 60 (118)
.++.+++||..++++.|+- +||.||-+++..++-
T Consensus 183 IDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~~~kFDvfiTDPpeTi~alk~Flg 241 (354)
T COG1568 183 IDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDLKRKFDVFITDPPETIKALKLFLG 241 (354)
T ss_pred chHHHHHHHHHHHHHhCccchhheeehhcccChHHHHhhCCeeecCchhhHHHHHHHHh
Confidence 4788999999999998854 899999998888764
No 89
>PF12967 DUF3855: Domain of Unknown Function with PDB structure (DUF3855); InterPro: IPR024482 This domain forms an unusual alpha/beta fold where a six-stranded antiparallel beta-sheet is wrapped around a central alpha-helix, flanked by an additional alpha-helix and a small sub-domain consisting of a single beta-strand and a two-stranded antiparallel beta-sheet []. It shows weak structural similarities to phosphoribosylformylglycinamidine synthases and some thioesterase superfamily members, but its function is unknown.; PDB: 1O22_A.
Probab=47.53 E-value=18 Score=27.39 Aligned_cols=27 Identities=26% Similarity=0.284 Sum_probs=14.0
Q ss_pred ccCCHHHHHHHHHHHHHhCCccchhhh
Q 039995 25 AINTSEELNFVKDIAAATGVVLDPVYS 51 (118)
Q Consensus 25 G~~t~e~~~~I~~~a~~eGI~LDPVYT 51 (118)
|+-+..+.+-|+++-+++||.||||-+
T Consensus 15 ~k~~~~le~k~~ei~~etgisl~~vns 41 (158)
T PF12967_consen 15 DKEFRILERKMREIFNETGISLEPVNS 41 (158)
T ss_dssp T---HHHHHHHHHHHHHHS--------
T ss_pred CchhhHHHHHHHHHHHhcCceeeecch
Confidence 445567888999999999999999975
No 90
>PTZ00424 helicase 45; Provisional
Probab=45.58 E-value=45 Score=27.06 Aligned_cols=39 Identities=15% Similarity=0.133 Sum_probs=31.2
Q ss_pred CCcccCCHHHHHHHHHHHHH-hCCccchhhhHHHHHHHHH
Q 039995 22 LGYAINTSEELNFVKDIAAA-TGVVLDPVYSGKAAYGMLN 60 (118)
Q Consensus 22 ~GYG~~t~e~~~~I~~~a~~-eGI~LDPVYTgKa~~gL~~ 60 (118)
.||..+++--.++|..+.+. .-|..-|+=|||++..++.
T Consensus 46 ~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~ 85 (401)
T PTZ00424 46 YGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIA 85 (401)
T ss_pred cCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHH
Confidence 48889999999999988764 4466789999999877654
No 91
>PRK08360 4-aminobutyrate aminotransferase; Provisional
Probab=43.11 E-value=71 Score=27.26 Aligned_cols=57 Identities=11% Similarity=-0.046 Sum_probs=32.3
Q ss_pred CcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCC-CeEEEEecCC
Q 039995 23 GYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEG-RKVLFVHTGG 81 (118)
Q Consensus 23 GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g-~rVLfiHTGG 81 (118)
.+|...|++.++|++...+-....-+.++-.....+.+.+.+ ..+.+ .+|.|..||.
T Consensus 54 ~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~la~~L~~--~~p~~~~~v~f~~sGs 111 (443)
T PRK08360 54 NVGHNNPRVVKAIKEQTDKLIHYTPIYGFPVEPLLLAEKLIE--IAPGDNPKVSFGLSGS 111 (443)
T ss_pred ccCCCCHHHHHHHHHHHHhccCccccccCcHHHHHHHHHHHH--hCCCCCCEEEEcCCHH
Confidence 577889999999988776533322333333333444444443 12222 5777777764
No 92
>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase. All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.
Probab=42.86 E-value=76 Score=26.87 Aligned_cols=57 Identities=11% Similarity=0.044 Sum_probs=31.6
Q ss_pred CcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCC-CeEEEEecCC
Q 039995 23 GYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEG-RKVLFVHTGG 81 (118)
Q Consensus 23 GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g-~rVLfiHTGG 81 (118)
-.|...|++.+++++..++-+...-+.++......+.+.+.+ ..+.+ .+|.|..||.
T Consensus 58 ~lGh~~p~v~~ai~~~~~~~~~~~~~~~~~~~~~~la~~l~~--~~~~~~~~v~f~~sGs 115 (427)
T TIGR00508 58 IHGYNHPRLNAAAQKQIDKMSHVMFGGFTHKPAIELCQKLVK--MTPNALDCVFLADSGS 115 (427)
T ss_pred cCCCCCHHHHHHHHHHHHhcCCccccccCCHHHHHHHHHHHh--hCCCCCCEEEEeCCcH
Confidence 456778999999998777644333222333444444443433 12222 4666666665
No 93
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=42.85 E-value=85 Score=24.14 Aligned_cols=51 Identities=20% Similarity=0.395 Sum_probs=37.2
Q ss_pred ccCCHHHHHHHHHHHHHhCCccchhh------hHHH--HHHHHHHHHhCCCCCCCCeEEEEe
Q 039995 25 AINTSEELNFVKDIAAATGVVLDPVY------SGKA--AYGMLNDMAQNPKKWEGRKVLFVH 78 (118)
Q Consensus 25 G~~t~e~~~~I~~~a~~eGI~LDPVY------TgKa--~~gL~~~l~~~g~~~~g~rVLfiH 78 (118)
|..+....++++.+++..+-...|+| +||+ +.++.+.+.+. .++.+|++++
T Consensus 13 g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~---~~~~~v~y~~ 71 (219)
T PF00308_consen 13 GESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQ---HPGKRVVYLS 71 (219)
T ss_dssp TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHH---CTTS-EEEEE
T ss_pred CCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhc---cccccceeec
Confidence 45688999999999999888888888 6886 45555544432 1467899996
No 94
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.
Probab=40.63 E-value=1.2e+02 Score=22.77 Aligned_cols=54 Identities=19% Similarity=0.163 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhC-CCCCCCCeEEEEecCCcc
Q 039995 29 SEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQN-PKKWEGRKVLFVHTGGLL 83 (118)
Q Consensus 29 ~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~-g~~~~g~rVLfiHTGGl~ 83 (118)
++++++|+.+-.... .-.-++|++|+.-..+.+... +..+...+|+++-|-|-.
T Consensus 66 ~~l~~~i~~l~~~~~-~~g~T~~~~AL~~a~~~~~~~~~~r~~~~kv~IllTDG~s 120 (192)
T cd01473 66 NELLKKINDLKNSYR-SGGETYIVEALKYGLKNYTKHGNRRKDAPKVTMLFTDGND 120 (192)
T ss_pred HHHHHHHHHHHhccC-CCCcCcHHHHHHHHHHHhccCCCCcccCCeEEEEEecCCC
Confidence 567777776654322 235789999997766555432 233334789999998854
No 95
>cd06808 PLPDE_III Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes. The fold type III PLP-dependent enzyme family is predominantly composed of two-domain proteins with similarity to bacterial alanine racemases (AR) including eukaryotic ornithine decarboxylases (ODC), prokaryotic diaminopimelate decarboxylases (DapDC), biosynthetic arginine decarboxylases (ADC), carboxynorspermidine decarboxylases (CANSDC), and similar proteins. AR-like proteins contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. These proteins play important roles in the biosynthesis of amino acids and polyamine. The family also includes the single-domain YBL036c-like proteins, which contain a single PLP-binding TIM-barrel domain without any N- or C-terminal extensions. Due to the lack of a second domain, these p
Probab=40.36 E-value=52 Score=23.99 Aligned_cols=60 Identities=12% Similarity=0.139 Sum_probs=37.4
Q ss_pred CCcccCCHHHHHHHHHHHHHhCCcc------------chhhhHHHHHHHHH---HHHhCCCCCCCCeEEEEecCCccccc
Q 039995 22 LGYAINTSEELNFVKDIAAATGVVL------------DPVYSGKAAYGMLN---DMAQNPKKWEGRKVLFVHTGGLLGLF 86 (118)
Q Consensus 22 ~GYG~~t~e~~~~I~~~a~~eGI~L------------DPVYTgKa~~gL~~---~l~~~g~~~~g~rVLfiHTGGl~glf 86 (118)
.-+|.+.++..++++.+.+..++.+ |+-++.+.+..+.+ .+.+ .+-++-++|.||.++..
T Consensus 120 ~R~G~~~~e~~~~~~~i~~~~~l~l~Gl~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~i~~Ggg~~~~ 194 (211)
T cd06808 120 GKFGVRPEELKALLERAKELPHLRLVGLHTHFGSADEDYSPFVEALSRFVAALDQLGE-----LGIDLEQLSIGGSFAIL 194 (211)
T ss_pred CCCCCCHHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHh-----cCCCCCEEEECCCCCcC
Confidence 4478777888888888766555544 44455555555543 2222 23456689999988863
No 96
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=39.41 E-value=40 Score=25.67 Aligned_cols=68 Identities=26% Similarity=0.429 Sum_probs=44.6
Q ss_pred CHHHHHHHHHHHHHhCCc-cchhhhHH---HHHHHHHHHHhCCCCCCCCeEEEEecCCcccccccH-HHhhHhhc
Q 039995 28 TSEELNFVKDIAAATGVV-LDPVYSGK---AAYGMLNDMAQNPKKWEGRKVLFVHTGGLLGLFDKV-DQMAPLLK 97 (118)
Q Consensus 28 t~e~~~~I~~~a~~eGI~-LDPVYTgK---a~~gL~~~l~~~g~~~~g~rVLfiHTGGl~glf~~~-~~~~~~~~ 97 (118)
+++..+.++.+.+..||+ .=|+|.+- .+-.+++.+ .. ....++.++.+-|||.++-.-.. ..+++.+.
T Consensus 54 ~~~~~~~~~~i~~AD~iIi~tP~Y~~s~pg~LKn~iD~l-~~-~~l~~K~v~iiat~G~~~~~~~~~~~lr~~l~ 126 (191)
T PRK10569 54 SPALKTFTEQLAQADGLIVATPVYKASFSGALKTLLDLL-PE-RALEHKVVLPLATGGSVAHMLAVDYALKPVLS 126 (191)
T ss_pred CHHHHHHHHHHHHCCEEEEECCccCCCCCHHHHHHHHhC-Ch-hhhCCCEEEEEEecCCchhHHHHHHHHHHHHH
Confidence 678999999999999865 57999762 223333322 22 22357889999999988754333 45565553
No 97
>PRK01060 endonuclease IV; Provisional
Probab=37.86 E-value=1.1e+02 Score=23.55 Aligned_cols=54 Identities=15% Similarity=0.191 Sum_probs=34.1
Q ss_pred CCHHHHHHHHHHHHHhCCcc----------------chhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCCc
Q 039995 27 NTSEELNFVKDIAAATGVVL----------------DPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGL 82 (118)
Q Consensus 27 ~t~e~~~~I~~~a~~eGI~L----------------DPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGGl 82 (118)
.+++..+.++...++.|+.+ ||-+--+++..+.+.+.....+ |.++|.+|+|..
T Consensus 44 ~~~~~~~~lk~~~~~~gl~~~~~~~h~~~~~nl~~~d~~~r~~s~~~~~~~i~~A~~l--ga~~vv~h~G~~ 113 (281)
T PRK01060 44 LEELNIEAFKAACEKYGISPEDILVHAPYLINLGNPNKEILEKSRDFLIQEIERCAAL--GAKLLVFHPGSH 113 (281)
T ss_pred CCHHHHHHHHHHHHHcCCCCCceEEecceEecCCCCCHHHHHHHHHHHHHHHHHHHHc--CCCEEEEcCCcC
Confidence 47888899999999999863 2222234444444433322234 667888899974
No 98
>PRK09352 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=36.42 E-value=1.3e+02 Score=23.71 Aligned_cols=48 Identities=15% Similarity=0.249 Sum_probs=32.0
Q ss_pred HHHHHHHHHhCCccch----------hhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCC
Q 039995 33 NFVKDIAAATGVVLDP----------VYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGG 81 (118)
Q Consensus 33 ~~I~~~a~~eGI~LDP----------VYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGG 81 (118)
..++.+++.-|++.|. ++++-.+..|.+ +.+.+.+.+|++|+++-.|.
T Consensus 250 ~~~~~~~~~lg~~~~~~~~~~~~~Gn~~~a~~~~~L~~-~~~~g~~~~Gd~vll~s~G~ 307 (319)
T PRK09352 250 RIIDATAKKLGLPMEKVVVTVDKYGNTSAASIPLALDE-AVRDGRIKRGDLVLLEGFGG 307 (319)
T ss_pred HHHHHHHHHhCCCHHHhhhhHHhhCCHHHHHHHHHHHH-HHHcCCCCCCCEEEEEEEch
Confidence 3444555555665544 445666777765 55556788899999999884
No 99
>PRK06840 hypothetical protein; Validated
Probab=34.32 E-value=1.3e+02 Score=24.14 Aligned_cols=50 Identities=12% Similarity=0.058 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhCCccchhh---------hHHHHHHHHHHHHhCCCCCCCCeEEEEecCCc
Q 039995 32 LNFVKDIAAATGVVLDPVY---------SGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGL 82 (118)
Q Consensus 32 ~~~I~~~a~~eGI~LDPVY---------TgKa~~gL~~~l~~~g~~~~g~rVLfiHTGGl 82 (118)
...++.+++.-||+.|.++ ++=.+..|. ++.+.+++.+|++|+++-.|.-
T Consensus 267 ~~~~~~~~~~Lgl~~~~~~~~~~~Gn~~sas~~~~L~-~~~~~~~~~~Gd~ill~~~G~G 325 (339)
T PRK06840 267 RSAHIALLEGLGLTEEQAIYLDEYGHLGQLDQILSLH-LALEQGKLKDGDLVVLVSAGTG 325 (339)
T ss_pred HHHHHHHHHHcCCCHHHeEeHHhccchhhhhHHHHHH-HHHHcCCCCCCCEEEEEEEehh
Confidence 3445556666677766643 344455554 4555667778999999988753
No 100
>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=34.05 E-value=1.2e+02 Score=25.97 Aligned_cols=57 Identities=11% Similarity=0.046 Sum_probs=28.2
Q ss_pred CcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCC-CeEEEEecCC
Q 039995 23 GYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEG-RKVLFVHTGG 81 (118)
Q Consensus 23 GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g-~rVLfiHTGG 81 (118)
..|...|++.+++++..++-....-..++-+....+.+.+.+ ..+.. .+|.|..||.
T Consensus 67 ~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~lAe~L~~--~~p~~~~~v~f~~sGs 124 (453)
T PRK06943 67 LFGHANPRINAALKDQLDTLEHAMLAGCTHEPAIELAERLAA--LTGGTLGHAFFASDGA 124 (453)
T ss_pred cCCCCCHHHHHHHHHHHHhcCCccccccCCHHHHHHHHHHHH--hCCCCCCEEEEeCCCH
Confidence 356677888888887666532222222333333344433333 12211 3666665554
No 101
>PF09863 DUF2090: Uncharacterized protein conserved in bacteria (DUF2090); InterPro: IPR018659 This domain, found in various prokaryotic carbohydrate kinases, has no known function.
Probab=33.66 E-value=40 Score=28.59 Aligned_cols=62 Identities=21% Similarity=0.299 Sum_probs=35.1
Q ss_pred HHHHHHHHHH-------HhCCccchhhhHHHHHHHHHHHHhCCCC------CCCCeEEEEecCCcccccccHHHhhHhhc
Q 039995 31 ELNFVKDIAA-------ATGVVLDPVYSGKAAYGMLNDMAQNPKK------WEGRKVLFVHTGGLLGLFDKVDQMAPLLK 97 (118)
Q Consensus 31 ~~~~I~~~a~-------~eGI~LDPVYTgKa~~gL~~~l~~~g~~------~~g~rVLfiHTGGl~glf~~~~~~~~~~~ 97 (118)
++++.++.++ ..||++|..|-.-++...-. .|.+ .+|+|-|= |.+.+++.+.+.
T Consensus 69 ~~~A~~~va~~~G~~~g~~GiL~D~~~GqdaL~~atg----~G~WIgRPvE~pgSrPL~---------fE~G~digs~L~ 135 (311)
T PF09863_consen 69 ILQAAQQVAAEAGLPQGGAGILCDGRYGQDALNAATG----RGWWIGRPVELPGSRPLR---------FEHGRDIGSQLI 135 (311)
T ss_pred HHHHHHHHHHhcCCCCCCeeEEeecchhHHHHHHHhc----CCCeEEeecccCCCCcee---------eecCcCHHHHHH
Confidence 4556666666 46789999997666655432 2211 14555332 333444555666
Q ss_pred cccccccc
Q 039995 98 NWSRMDVH 105 (118)
Q Consensus 98 ~~~~~~~~ 105 (118)
.|++++|-
T Consensus 136 ~WP~ehvV 143 (311)
T PF09863_consen 136 EWPQEHVV 143 (311)
T ss_pred hCCcccEE
Confidence 67776653
No 102
>PRK05963 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=32.76 E-value=1.5e+02 Score=23.55 Aligned_cols=50 Identities=14% Similarity=0.215 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhCCccchh----------hhHHHHHHHHHHHHhCCCCCCCCeEEEEecCCc
Q 039995 32 LNFVKDIAAATGVVLDPV----------YSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGL 82 (118)
Q Consensus 32 ~~~I~~~a~~eGI~LDPV----------YTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGGl 82 (118)
...++.+.+.-||+-|.+ +++-.+..|- ++.+.+.+.+|.+||++-.|+-
T Consensus 257 ~~~~~~~~~~l~l~~~k~~~~l~~~Gn~~sas~~~~L~-~~~~~~~~~~Gd~vll~~~G~G 316 (326)
T PRK05963 257 ARIVDKVCETIGIPRAKAASTLETYGNSSAATIPLSLS-LANLEQPLREGERLLFAAAGAG 316 (326)
T ss_pred HHHHHHHHHHcCCCHHHhhhhHHhhCcHHHHHHHHHHH-HHHHhCCCCCCCEEEEEEEehh
Confidence 345556666667877754 4567777775 4555667888999999988853
No 103
>PRK08593 4-aminobutyrate aminotransferase; Provisional
Probab=32.70 E-value=1.3e+02 Score=25.62 Aligned_cols=57 Identities=9% Similarity=0.015 Sum_probs=31.1
Q ss_pred CcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCC--CeEEEEecCC
Q 039995 23 GYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEG--RKVLFVHTGG 81 (118)
Q Consensus 23 GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g--~rVLfiHTGG 81 (118)
..|...|++.++|++..++-....-..++-.....+.+.+.+ ..+.+ .+|.|..||.
T Consensus 55 ~lGH~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~lae~L~~--~~p~~~~~~v~f~~SGs 113 (445)
T PRK08593 55 NVGHAPPRVVEAIKAQADKFIHYTPAYMYHEPLVRLAKKLCE--LAPGDFEKRVTFGLSGS 113 (445)
T ss_pred cCCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHH--hCCCCCCCEEEECCchH
Confidence 367789999999998776533222222333333444443433 22222 4777766654
No 104
>COG3048 DsdA D-serine dehydratase [Amino acid transport and metabolism]
Probab=32.66 E-value=46 Score=29.08 Aligned_cols=36 Identities=19% Similarity=0.275 Sum_probs=28.5
Q ss_pred hhhhhhccccCCCcccCCHHHHHHHHHHHHHhCCccchhh
Q 039995 11 LMTRQPRLSKGLGYAINTSEELNFVKDIAAATGVVLDPVY 50 (118)
Q Consensus 11 ~~~~~l~~~~g~GYG~~t~e~~~~I~~~a~~eGI~LDPVY 50 (118)
+|-+.|+. =|-..++.+.+.+..+++.|||.|||-=
T Consensus 352 ~me~lL~G----~~TvdD~~ly~lL~~L~~~e~~rlEPSa 387 (443)
T COG3048 352 AMERLLDG----YYTVDDQTLYDLLGWLAQEEGIRLEPSA 387 (443)
T ss_pred HHHHHhCC----cEEechHHHHHHHHHHHHhcCcccCchh
Confidence 34455544 3777888999999999999999999964
No 105
>PF03460 NIR_SIR_ferr: Nitrite/Sulfite reductase ferredoxin-like half domain; InterPro: IPR005117 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively. The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a sirohaem through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. This entry describes the ferrodoxin-like (alpha/beta sandwich) domain, which consists of a duplication containing two subdomains of this fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3B0H_A 4GEP_A 2GEP_A 2AOP_A 5AOP_A 6GEP_A 4AOP_A 1AOP_A 3AOP_A 8GEP_A ....
Probab=31.20 E-value=48 Score=20.56 Aligned_cols=19 Identities=26% Similarity=0.352 Sum_probs=15.3
Q ss_pred ccCCHHHHHHHHHHHHHhC
Q 039995 25 AINTSEELNFVKDIAAATG 43 (118)
Q Consensus 25 G~~t~e~~~~I~~~a~~eG 43 (118)
|..+++.++.+.+++++.|
T Consensus 19 G~i~~~~l~~la~ia~~yg 37 (69)
T PF03460_consen 19 GRISAEQLRALAEIAEKYG 37 (69)
T ss_dssp GEEEHHHHHHHHHHHHHHS
T ss_pred EEECHHHHHHHHHHHHHhC
Confidence 7778888888888888776
No 106
>PRK07204 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=31.17 E-value=1.7e+02 Score=23.25 Aligned_cols=48 Identities=17% Similarity=0.203 Sum_probs=31.5
Q ss_pred HHHHHHHHhCCccchh----------hhHHHHHHHHHHHHhCCCCCCCCeEEEEecCCc
Q 039995 34 FVKDIAAATGVVLDPV----------YSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGL 82 (118)
Q Consensus 34 ~I~~~a~~eGI~LDPV----------YTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGGl 82 (118)
.++.+++.-|++.|.+ +++-.+..|.+ +.+.+.+.+|.+|+++--|+-
T Consensus 262 ~~~~i~~~l~l~~e~~~~~~~~~Gn~~sas~~~~L~~-~~~~g~~~~Gd~vll~~~G~G 319 (329)
T PRK07204 262 AMRLIRKKLGVDEERFVTIFEDHGNMIAASIPVALFE-AIKQKKVQRGNKILLLGTSAG 319 (329)
T ss_pred HHHHHHHHcCCCHHHhhhhHhhhCcHHHHHHHHHHHH-HHHcCCCCCCCEEEEEEEchh
Confidence 4445555566666644 35556667654 555677888999999887753
No 107
>TIGR01090 apt adenine phosphoribosyltransferase. A phylogenetic analysis suggested omitting the bi-directional best hit homologs from the spirochetes from the seed for this model and making only tentative predictions of adenine phosphoribosyltransferase function for this lineage.
Probab=31.16 E-value=58 Score=23.99 Aligned_cols=24 Identities=13% Similarity=0.109 Sum_probs=19.4
Q ss_pred CCccchhhh-HHHHHHHHHHHHhCC
Q 039995 43 GVVLDPVYS-GKAAYGMLNDMAQNP 66 (118)
Q Consensus 43 GI~LDPVYT-gKa~~gL~~~l~~~g 66 (118)
=+++|.|+| |.++.++.+.+.+.|
T Consensus 112 VLIVDDIitTG~Tl~~a~~~L~~~G 136 (169)
T TIGR01090 112 VLIVDDLLATGGTAEATDELIRKLG 136 (169)
T ss_pred EEEEeccccchHHHHHHHHHHHHcC
Confidence 377888877 999999998777754
No 108
>COG4990 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.02 E-value=78 Score=25.23 Aligned_cols=49 Identities=20% Similarity=0.252 Sum_probs=34.3
Q ss_pred CCCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecC
Q 039995 21 GLGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTG 80 (118)
Q Consensus 21 g~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTG 80 (118)
++|++...+.+..|.+. .-.-. --=|||.+.++..++.+ |..|+.|||-
T Consensus 94 n~g~tI~p~al~~fakk----Y~~~a-~d~tGksl~~ik~ql~k------g~PV~iw~T~ 142 (195)
T COG4990 94 NYGLTIWPTALVSFAKK----YNGNA-VDLTGKSLSDIKGQLLK------GRPVVIWVTN 142 (195)
T ss_pred CCCceechHHHHHHHHH----hCCcc-ccCcCCcHHHHHHHHhc------CCcEEEEEec
Confidence 45888888776666554 33322 33589999999875543 5679999998
No 109
>KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=30.82 E-value=1.7e+02 Score=25.97 Aligned_cols=60 Identities=13% Similarity=0.028 Sum_probs=44.9
Q ss_pred CCCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCC
Q 039995 21 GLGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGG 81 (118)
Q Consensus 21 g~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGG 81 (118)
..++|..+||+.+++.+-+.+-|..+-+-||-+++..-. .+.+.-.-+.-+||-|..+|=
T Consensus 67 ~~~~Ghanpev~ral~~q~~k~~hs~~~~~t~eav~l~~-~l~~~~~~~~~~rvff~nsGT 126 (433)
T KOG1401|consen 67 VTILGHANPEVARALAEQAKKLGHSSNGYFTLEAVELEE-VLSAVLGKGSAERVFFCNSGT 126 (433)
T ss_pred ccccCCCCHHHHHHHHHHHhhheeccCccccHHHHHHHH-HHHhcccCCCccEEEEecCCc
Confidence 567888899999999999999999999999999776643 233221111347899988874
No 110
>PRK09258 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=30.30 E-value=1.6e+02 Score=23.39 Aligned_cols=50 Identities=16% Similarity=0.199 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHhCCccchhh----------hHHHHHHHHHHHHhCCCCCCCCeEEEEecCC
Q 039995 31 ELNFVKDIAAATGVVLDPVY----------SGKAAYGMLNDMAQNPKKWEGRKVLFVHTGG 81 (118)
Q Consensus 31 ~~~~I~~~a~~eGI~LDPVY----------TgKa~~gL~~~l~~~g~~~~g~rVLfiHTGG 81 (118)
...+++.+++.-|++.|-++ ++-.+..|.+ +.+.+.+.+|++||++-.|.
T Consensus 268 ~~~~~~~~~~~lgl~~~k~~~~~~~~GN~~sas~~~~L~~-~~~~g~~~~Gd~vll~~~G~ 327 (338)
T PRK09258 268 GAAHTRAILKALGIDPEKVFTTFPTLGNMGPASLPITLAM-AAEEGFLKPGDRVALLGIGS 327 (338)
T ss_pred CHHHHHHHHHHhCCCHHHceehHhhhCCcHHhHHHHHHHH-HHHhCCCCCCCEEEEEEech
Confidence 34566666777788777665 5566677654 55556787899999998874
No 111
>TIGR00747 fabH 3-oxoacyl-(acyl-carrier-protein) synthase III. Active site residues include Cys112, His244 and Asn274 of E. coli FabH. Cys-112 is the site of acyl group attachment.
Probab=29.68 E-value=1.9e+02 Score=22.79 Aligned_cols=49 Identities=14% Similarity=0.238 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHhCCccchh----------hhHHHHHHHHHHHHhCCCCCCCCeEEEEecC
Q 039995 31 ELNFVKDIAAATGVVLDPV----------YSGKAAYGMLNDMAQNPKKWEGRKVLFVHTG 80 (118)
Q Consensus 31 ~~~~I~~~a~~eGI~LDPV----------YTgKa~~gL~~~l~~~g~~~~g~rVLfiHTG 80 (118)
...+++.+++.-||+.|.+ +++-.+..|.+ +.+.+.+.+|.+|+++=.|
T Consensus 248 ~~~~~~~~~~~lgi~~~k~~~~~~~~Gn~~sas~~~~L~~-~~~~~~~~~Gd~vll~~~G 306 (318)
T TIGR00747 248 NLRIIEALAKRLELDMSQVVKTVHKYGNTSAASIPLALDE-LLRTGRIKPGDLLLLVAFG 306 (318)
T ss_pred CHHHHHHHHHHcCCCHHHeeehHhhhCCHHHHHHHHHHHH-HHHcCCCCCCCEEEEEEEe
Confidence 3445666677777777643 44566677754 5556677788898888766
No 112
>TIGR02869 spore_SleB spore cortex-lytic enzyme. Members of this protein family are the spore cortex-lytic enzyme SleB from Bacillus subtilis and other Gram-positive, endospore-forming bacterial species. This protein is stored in an inactive form in the spore and activated during germination.
Probab=29.67 E-value=94 Score=24.06 Aligned_cols=34 Identities=12% Similarity=0.144 Sum_probs=30.3
Q ss_pred ccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHH
Q 039995 25 AINTSEELNFVKDIAAATGVVLDPVYSGKAAYGM 58 (118)
Q Consensus 25 G~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL 58 (118)
|..++.+.++++.|-+..|+..|-+-+.+.+..|
T Consensus 35 G~fg~~T~~AV~~FQ~~~GL~~dG~vg~~T~~~L 68 (201)
T TIGR02869 35 GVFGWLTYWAVRKFQSKNGLTVDGIVGPKTKAAL 68 (201)
T ss_pred CccCHHHHHHHHHHHHHhCCCCCCCcCHHHHHHh
Confidence 5688999999999999999999999988777776
No 113
>PRK05769 4-aminobutyrate aminotransferase; Provisional
Probab=29.43 E-value=1.7e+02 Score=24.94 Aligned_cols=57 Identities=14% Similarity=0.079 Sum_probs=31.0
Q ss_pred CcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCC--CCeEEEEecCC
Q 039995 23 GYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWE--GRKVLFVHTGG 81 (118)
Q Consensus 23 GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~--g~rVLfiHTGG 81 (118)
.+|...|++.+++++..++-....-+.|+-.....+.+.+.+ ..+. -.+|.|..||-
T Consensus 67 ~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~lAe~L~~--~~p~~~~~~v~f~~SGs 125 (441)
T PRK05769 67 NVGHAHPKVVKAVKEQAEKFLHYSLTDFYYEPAVELAERLVE--IAPGGFEKKVFFTNSGT 125 (441)
T ss_pred ccCCCCHHHHHHHHHHHHhccCccCcccCCHHHHHHHHHHHH--hCCCCCCCEEEECCchH
Confidence 377778999999988777533322222333333344433433 1221 24777776664
No 114
>COG2240 PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme metabolism]
Probab=29.21 E-value=1.2e+02 Score=25.31 Aligned_cols=58 Identities=21% Similarity=0.372 Sum_probs=39.1
Q ss_pred CCCccc------CCHHHHHHHHHHHH-HhCCccchhhhH--------HHHHHHHHHHHhCCCCCCCCeEEE------Eec
Q 039995 21 GLGYAI------NTSEELNFVKDIAA-ATGVVLDPVYSG--------KAAYGMLNDMAQNPKKWEGRKVLF------VHT 79 (118)
Q Consensus 21 g~GYG~------~t~e~~~~I~~~a~-~eGI~LDPVYTg--------Ka~~gL~~~l~~~g~~~~g~rVLf------iHT 79 (118)
-+|||+ ++++..++++.+.. ......|-|+|| +++.+.+..+++. ..++++ =|.
T Consensus 42 Htgyg~~~g~v~~~e~l~~~l~~l~~~~~~~~~davltGYlgs~~qv~~i~~~v~~vk~~-----~P~~~~l~DPVMGD~ 116 (281)
T COG2240 42 HTGYGKWTGIVMPPEQLADLLNGLEAIDKLGECDAVLTGYLGSAEQVRAIAGIVKAVKEA-----NPNALYLCDPVMGDP 116 (281)
T ss_pred CCCCCCCCCcCCCHHHHHHHHHHHHhcccccccCEEEEccCCCHHHHHHHHHHHHHHhcc-----CCCeEEEeCCcccCC
Confidence 456665 67788899998887 567889999985 6666666555442 344443 377
Q ss_pred CCcc
Q 039995 80 GGLL 83 (118)
Q Consensus 80 GGl~ 83 (118)
||+.
T Consensus 117 gglY 120 (281)
T COG2240 117 GGLY 120 (281)
T ss_pred Ccee
Confidence 7754
No 115
>PRK07738 flagellar protein FlaG; Provisional
Probab=29.05 E-value=58 Score=23.75 Aligned_cols=22 Identities=18% Similarity=0.363 Sum_probs=20.4
Q ss_pred cCCHHHHHHHHHHHHHhCCccc
Q 039995 26 INTSEELNFVKDIAAATGVVLD 47 (118)
Q Consensus 26 ~~t~e~~~~I~~~a~~eGI~LD 47 (118)
.|+++.++.+..+.+.-|+++|
T Consensus 93 IPpEe~L~l~~~m~e~~GlLvD 114 (117)
T PRK07738 93 IPPKKLLDMYAAMMEFVGLLVD 114 (117)
T ss_pred CCCHHHHHHHHHHHHHhcceee
Confidence 4899999999999999999998
No 116
>PHA02558 uvsW UvsW helicase; Provisional
Probab=29.05 E-value=88 Score=27.07 Aligned_cols=36 Identities=11% Similarity=-0.041 Sum_probs=28.4
Q ss_pred CcccCCHHHHHHHHHHHH-HhCCccchhhhHHHHHHH
Q 039995 23 GYAINTSEELNFVKDIAA-ATGVVLDPVYSGKAAYGM 58 (118)
Q Consensus 23 GYG~~t~e~~~~I~~~a~-~eGI~LDPVYTgKa~~gL 58 (118)
+.+.+.+.-.+++..+.+ ..||+.-|+-+||++.+.
T Consensus 111 ~~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~ 147 (501)
T PHA02558 111 KKIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQY 147 (501)
T ss_pred CcCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHH
Confidence 467888888887766554 568999999999999765
No 117
>PRK06917 hypothetical protein; Provisional
Probab=28.90 E-value=1.8e+02 Score=24.82 Aligned_cols=56 Identities=14% Similarity=0.208 Sum_probs=29.5
Q ss_pred cccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCC-CeEEEEecCC
Q 039995 24 YAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEG-RKVLFVHTGG 81 (118)
Q Consensus 24 YG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g-~rVLfiHTGG 81 (118)
+|...|++.++|++..++-.....+.|+-.....+.+.+.+ ..+.+ .+|.|..||.
T Consensus 45 lGh~hp~v~~Ai~~ql~~~~~~~~~~~~~~~~~~lae~L~~--~~p~~~~~v~f~~sGs 101 (447)
T PRK06917 45 IGHGVKEIADAIKEQAEEVSFVYRSQFTSEPAEKLAKKLSD--LSPGDLNWSFFVNSGS 101 (447)
T ss_pred CCCCCHHHHHHHHHHHhhCcCccccccCCHHHHHHHHHHHH--hCCCCCCEEEEeCChH
Confidence 56678899888888777532222222333333444443433 22222 4666666664
No 118
>PF14681 UPRTase: Uracil phosphoribosyltransferase; PDB: 1V9S_B 1UPF_A 1UPU_D 1JLR_B 1BD4_A 1BD3_C 1JLS_D 1XTV_C 1XTU_H 3G6W_C ....
Probab=28.87 E-value=53 Score=25.25 Aligned_cols=56 Identities=16% Similarity=0.383 Sum_probs=40.4
Q ss_pred HhCCccchhhh-HHHHHHHHHHHHhCCCCCCCCeEEEEecCCcccccccHHHhhHhhcccccccc
Q 039995 41 ATGVVLDPVYS-GKAAYGMLNDMAQNPKKWEGRKVLFVHTGGLLGLFDKVDQMAPLLKNWSRMDV 104 (118)
Q Consensus 41 ~eGI~LDPVYT-gKa~~gL~~~l~~~g~~~~g~rVLfiHTGGl~glf~~~~~~~~~~~~~~~~~~ 104 (118)
..=|++||+=. |.++...++.+.+.|. +.++|+++ .+....+-++.+.++++...+
T Consensus 122 ~~VillDpmlaTG~s~~~ai~~L~~~G~--~~~~I~~v------~~ias~~Gl~~l~~~~P~v~I 178 (207)
T PF14681_consen 122 RKVILLDPMLATGGSAIAAIEILKEHGV--PEENIIIV------SVIASPEGLERLLKAFPDVRI 178 (207)
T ss_dssp SEEEEEESEESSSHHHHHHHHHHHHTTG---GGEEEEE------EEEEEHHHHHHHHHHSTTSEE
T ss_pred CEEEEEeccccchhhHHHHHHHHHHcCC--CcceEEEE------EEEecHHHHHHHHHhCCCeEE
Confidence 44588999864 8888888888877643 35789988 466667777777777776443
No 119
>PRK06082 4-aminobutyrate aminotransferase; Provisional
Probab=28.79 E-value=1.4e+02 Score=25.73 Aligned_cols=55 Identities=15% Similarity=0.158 Sum_probs=30.0
Q ss_pred cccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCC-CeEEEEecCC
Q 039995 24 YAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEG-RKVLFVHTGG 81 (118)
Q Consensus 24 YG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g-~rVLfiHTGG 81 (118)
+|...|++.+++++..++..... ..|+-.....+.+.+.+ ..+.+ .+|.|..||.
T Consensus 85 lGh~~p~v~~Ai~~ql~~~~~~~-~~~~~~~~~~lae~L~~--~~p~~~~~v~f~~sGs 140 (459)
T PRK06082 85 LGYGHPHVIEKVKEQMAKLPFSP-RRFTNETAIECAEKLTE--IAGGELNRVLFAPGGT 140 (459)
T ss_pred cCCCCHHHHHHHHHHHHhCCCcc-CccCCHHHHHHHHHHHH--hCCCCCCEEEECCCcH
Confidence 47788999999998887654322 12333333344433433 22222 4666665554
No 120
>PF03646 FlaG: FlaG protein; InterPro: IPR005186 Although these proteins are known to be important for flagellar their exact function is unknown.; PDB: 2HC5_A.
Probab=28.71 E-value=22 Score=24.42 Aligned_cols=22 Identities=27% Similarity=0.502 Sum_probs=17.9
Q ss_pred cCCHHHHHHHHHHHHHhCCccc
Q 039995 26 INTSEELNFVKDIAAATGVVLD 47 (118)
Q Consensus 26 ~~t~e~~~~I~~~a~~eGI~LD 47 (118)
.|+++.+++.+.+.+..|+++|
T Consensus 84 IP~Ee~l~l~~~l~e~~Gll~D 105 (107)
T PF03646_consen 84 IPPEELLDLAKRLRELVGLLVD 105 (107)
T ss_dssp E-HHHHHHHHHHHHHHHHHHS-
T ss_pred CCcHHHHHHHHHHHHHhceeec
Confidence 4788899999999999999887
No 121
>PRK12879 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=28.69 E-value=2e+02 Score=22.61 Aligned_cols=48 Identities=10% Similarity=0.214 Sum_probs=31.8
Q ss_pred HHHHHHHHHhCCccchhh----------hHHHHHHHHHHHHhCCCCCCCCeEEEEecCC
Q 039995 33 NFVKDIAAATGVVLDPVY----------SGKAAYGMLNDMAQNPKKWEGRKVLFVHTGG 81 (118)
Q Consensus 33 ~~I~~~a~~eGI~LDPVY----------TgKa~~gL~~~l~~~g~~~~g~rVLfiHTGG 81 (118)
..++.+++.-|++.|.++ ++-.+..|.+ +.+.+.+.+|++|+++=.|.
T Consensus 256 ~~~~~~~~~lg~~~~~~~~~~~~~Gn~~sas~~~~L~~-~~~~g~~~~Gd~vll~~~G~ 313 (325)
T PRK12879 256 RIIESLCEKLGIPMEKTLVSVEYYGNTSAATIPLALDL-ALEQGKIKPGDTLLLYGFGA 313 (325)
T ss_pred HHHHHHHHHcCCCHHHhhhhHhhhCchHHHHHHHHHHH-HHHcCCCCCCCEEEEEEEch
Confidence 344555666677777664 4556677754 55556777889998887764
No 122
>cd01732 LSm5 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm4 is one of at least seven subunits that assemble onto U6 snRNA to form a seven-membered ring structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=28.20 E-value=43 Score=22.23 Aligned_cols=12 Identities=25% Similarity=0.692 Sum_probs=10.8
Q ss_pred CCCeEEEEecCC
Q 039995 70 EGRKVLFVHTGG 81 (118)
Q Consensus 70 ~g~rVLfiHTGG 81 (118)
+|.+|++||.||
T Consensus 65 RG~nV~~i~p~~ 76 (76)
T cd01732 65 NGNNICMLVPGG 76 (76)
T ss_pred eCCeEEEEECCC
Confidence 688999999998
No 123
>PRK00129 upp uracil phosphoribosyltransferase; Reviewed
Probab=27.75 E-value=1.2e+02 Score=23.31 Aligned_cols=55 Identities=13% Similarity=0.284 Sum_probs=38.7
Q ss_pred HHhCCccchh-hhHHHHHHHHHHHHhCCCCCCCCeEEEEecCCcccccccHHHhhHhhcccccccc
Q 039995 40 AATGVVLDPV-YSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGLLGLFDKVDQMAPLLKNWSRMDV 104 (118)
Q Consensus 40 ~~eGI~LDPV-YTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGGl~glf~~~~~~~~~~~~~~~~~~ 104 (118)
.+.=|++||+ .||.++...++.+.+.| .++|.++.+ ....+.++.+.++++...+
T Consensus 124 ~~~VllvDd~laTG~Tl~~ai~~L~~~G----~~~I~~~~l------l~~~~gl~~l~~~~p~v~i 179 (209)
T PRK00129 124 ERTVIVVDPMLATGGSAIAAIDLLKKRG----AKNIKVLCL------VAAPEGIKALEEAHPDVEI 179 (209)
T ss_pred CCEEEEECCcccchHHHHHHHHHHHHcC----CCEEEEEEE------ecCHHHHHHHHHHCCCcEE
Confidence 3456888976 56999999998887765 256777653 4456667777788877444
No 124
>PF01878 EVE: EVE domain; InterPro: IPR002740 The EVE domain is part of the wider PUA domain superfamily. The function of this domain is not known but, given the structural similarities to PUA, is likely to involve RNA binding []. ; PDB: 2G2X_B 2AR1_A 3EOP_A 2EVE_A 2HD9_A 2ZBN_A 1WMM_A 2P5D_A 2GBS_A 1ZCE_A.
Probab=27.53 E-value=50 Score=23.49 Aligned_cols=20 Identities=35% Similarity=0.557 Sum_probs=12.1
Q ss_pred CCCCCeEEEEecC-Ccccccc
Q 039995 68 KWEGRKVLFVHTG-GLLGLFD 87 (118)
Q Consensus 68 ~~~g~rVLfiHTG-Gl~glf~ 87 (118)
+.+|.+|+|.||| ..+++.+
T Consensus 40 mk~GD~vifY~s~~~~~~iva 60 (143)
T PF01878_consen 40 MKPGDKVIFYHSGCKERGIVA 60 (143)
T ss_dssp --TT-EEEEEETSSSS-EEEE
T ss_pred CCCCCEEEEEEcCCCCCEEEE
Confidence 4468899999999 3455444
No 125
>PF00710 Asparaginase: Asparaginase; InterPro: IPR006034 Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma []. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma [, ] - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die. Glutaminase, a similar enzyme, catalyses the deaminination of glutamine to glutamic acid and an ammonium ion []. Both enzymes are homotetramers []: two threonine residues in the N-terminal half of the proteins are involved in the catalytic activity.; GO: 0006520 cellular amino acid metabolic process; PDB: 1HFW_C 1HG1_B 1JSL_C 1HFK_A 1JSR_C 1HFJ_C 1HG0_D 1O7J_A 1ZQ1_A 1JJA_D ....
Probab=27.49 E-value=36 Score=27.87 Aligned_cols=13 Identities=38% Similarity=0.815 Sum_probs=11.2
Q ss_pred eEEEEecCCcccc
Q 039995 73 KVLFVHTGGLLGL 85 (118)
Q Consensus 73 rVLfiHTGGl~gl 85 (118)
||++|+|||..+.
T Consensus 1 kI~vi~TGGTI~~ 13 (313)
T PF00710_consen 1 KILVIYTGGTIAM 13 (313)
T ss_dssp EEEEEEEESGGGE
T ss_pred CEEEEEeCchhhc
Confidence 7999999998764
No 126
>PRK06105 aminotransferase; Provisional
Probab=27.15 E-value=1.9e+02 Score=24.80 Aligned_cols=20 Identities=0% Similarity=-0.069 Sum_probs=13.3
Q ss_pred CcccCCHHHHHHHHHHHHHh
Q 039995 23 GYAINTSEELNFVKDIAAAT 42 (118)
Q Consensus 23 GYG~~t~e~~~~I~~~a~~e 42 (118)
.+|...|++.+++++..++-
T Consensus 61 ~lGh~~p~i~~Ai~~q~~~~ 80 (460)
T PRK06105 61 ALGFSEQRLVEAAARQMKKL 80 (460)
T ss_pred cCCCCCHHHHHHHHHHHHhC
Confidence 45666777777777766553
No 127
>PF05534 HicB: HicB family; InterPro: IPR008651 This family consists of several bacterial HicB related proteins. The function of HicB is unknown although it is thought to be involved in pilus formation. It has been speculated that HicB performs a function antagonistic to that of pili and yet is necessary for invasion of certain niches [].
Probab=27.11 E-value=75 Score=19.54 Aligned_cols=22 Identities=32% Similarity=0.271 Sum_probs=19.4
Q ss_pred cCCHHHHHHHHHHHHHhCCccc
Q 039995 26 INTSEELNFVKDIAAATGVVLD 47 (118)
Q Consensus 26 ~~t~e~~~~I~~~a~~eGI~LD 47 (118)
+.++++.+.+...|..+|+-|.
T Consensus 23 Ri~~~Lh~~l~~~A~~~gvSlN 44 (51)
T PF05534_consen 23 RIPPELHRALAEAAAAEGVSLN 44 (51)
T ss_pred eCCHHHHHHHHHHHHHhCCCHH
Confidence 4689999999999999999764
No 128
>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed
Probab=27.05 E-value=2.1e+02 Score=23.49 Aligned_cols=55 Identities=11% Similarity=0.225 Sum_probs=31.6
Q ss_pred CcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCC
Q 039995 23 GYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGG 81 (118)
Q Consensus 23 GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGG 81 (118)
-.|...|++.+++.+..++-... -.+++-+....+.+.+.+- . ...+++|.-||.
T Consensus 53 ~lGh~~p~v~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~--~-~~~~~~~~~sGs 107 (403)
T PRK05093 53 ALGHCHPALVKALKEQGEKLWHI-SNVFTNEPALRLAKKLIDA--T-FAERVFFANSGA 107 (403)
T ss_pred cCCCCCHHHHHHHHHHHHhcCcc-cCccCCHHHHHHHHHHHhh--C-CCCEEEEeCchH
Confidence 47778999999998877653221 1233333333444444431 2 235788877765
No 129
>PLN02326 3-oxoacyl-[acyl-carrier-protein] synthase III
Probab=26.84 E-value=1.9e+02 Score=23.97 Aligned_cols=51 Identities=12% Similarity=0.146 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhCCccchhh----------hHHHHHHHHHHHHhCCCCCCCCeEEEEecCCc
Q 039995 31 ELNFVKDIAAATGVVLDPVY----------SGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGL 82 (118)
Q Consensus 31 ~~~~I~~~a~~eGI~LDPVY----------TgKa~~gL~~~l~~~g~~~~g~rVLfiHTGGl 82 (118)
....++.+++.-||+.|.+. ++-.+.+|.+ +.+.+.+.+|.+||++-.|+-
T Consensus 309 n~~~~~~~~~~Lgl~~ek~~~~l~~~GNt~sAsi~~~L~~-~~~~g~~~~Gd~vll~~~G~G 369 (379)
T PLN02326 309 NQRIIDAVAQRLGIPPEKVISNLANYGNTSAASIPLALDE-AVRSGKVKKGDVIATAGFGAG 369 (379)
T ss_pred CHHHHHHHHHHcCCCHHHeeecHhhcCcHHHHHHHHHHHH-HHHcCCCCCCCEEEEEEEChh
Confidence 34456666777778777653 3455666654 556677878999999887753
No 130
>PRK07678 aminotransferase; Validated
Probab=26.71 E-value=2.2e+02 Score=24.38 Aligned_cols=56 Identities=9% Similarity=0.043 Sum_probs=30.5
Q ss_pred CcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCC
Q 039995 23 GYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGG 81 (118)
Q Consensus 23 GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGG 81 (118)
.+|...|++.+++++..++-. ..-+.|+-.....+.+.+.+ ..+...+|.|..||.
T Consensus 60 ~lGh~~p~v~~ai~~q~~~~~-~~~~~~~~~~~~~lae~l~~--~~~~~~~v~f~~sGs 115 (451)
T PRK07678 60 NVGYGRKELAEAAYEQLKTLS-YFPLTQSHEPAIKLAEKLNE--WLGGEYVIFFSNSGS 115 (451)
T ss_pred cCCCCCHHHHHHHHHHHHhcC-ccccccCCHHHHHHHHHHHH--hCCCCCEEEEeCCcH
Confidence 457778999999988766432 11223333333444443433 122234777776664
No 131
>PRK06242 flavodoxin; Provisional
Probab=26.61 E-value=87 Score=21.85 Aligned_cols=50 Identities=26% Similarity=0.292 Sum_probs=28.2
Q ss_pred hhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCCcccccccHHHhhHhhccc
Q 039995 48 PVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGLLGLFDKVDQMAPLLKNW 99 (118)
Q Consensus 48 PVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGGl~glf~~~~~~~~~~~~~ 99 (118)
|||.+...-.+.+-+.+-... .++++.++=|+|..+--. .+.+...++.+
T Consensus 52 pvy~~~~~~~~~~fl~~~~~~-~~k~~~~f~t~g~~~~~~-~~~l~~~l~~~ 101 (150)
T PRK06242 52 GIYFGKFHKSLLKLIEKLPPV-SGKKAFIFSTSGLPFLKY-HKALKKKLKEK 101 (150)
T ss_pred chhcCCcCHHHHHHHHhhhhh-cCCeEEEEECCCCCcchH-HHHHHHHHHHC
Confidence 788775555444322221112 578899998988765321 45556565443
No 132
>KOG1317 consensus Fumarase [Energy production and conversion]
Probab=26.35 E-value=2e+02 Score=25.38 Aligned_cols=50 Identities=22% Similarity=0.272 Sum_probs=34.2
Q ss_pred HHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecC-Ccccccc
Q 039995 34 FVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTG-GLLGLFD 87 (118)
Q Consensus 34 ~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTG-Gl~glf~ 87 (118)
+..++-+..| |||-- +++..--.++++. |.+...=..+.|.|| |.|.-..
T Consensus 80 aaA~vN~~~G--LDpki-s~Ai~~AadeV~~-GKL~dhFPLvvwQTGSGTQsNMN 130 (487)
T KOG1317|consen 80 AAAEVNQEYG--LDPKI-SKAISQAADEVAS-GKLNDHFPLVVWQTGSGTQSNMN 130 (487)
T ss_pred HHHHHhHhhC--CChHH-HHHHHHHHHHHhc-CcccccCceeEEecCCCccccCc
Confidence 3444555666 99987 5666666667776 566555678999999 7776543
No 133
>PRK00441 argR arginine repressor; Provisional
Probab=25.87 E-value=39 Score=25.19 Aligned_cols=40 Identities=13% Similarity=0.052 Sum_probs=26.2
Q ss_pred CCCCCeEEEEec--CCcccccccHHHhhHhhcccccccccccccCCCCCC
Q 039995 68 KWEGRKVLFVHT--GGLLGLFDKVDQMAPLLKNWSRMDVHESVPRKDGTG 115 (118)
Q Consensus 68 ~~~g~rVLfiHT--GGl~glf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (118)
+...++.+.||| |..+++ +.++++.+-..+- ....+|||+
T Consensus 86 v~~~~~lvvIkT~pG~A~~v-------a~~iD~~~~~eI~-GTiAGdDTi 127 (149)
T PRK00441 86 VENVDNMIVIKTISGSASAA-------AEAIDTLNFDGIA-GTIAGDNTI 127 (149)
T ss_pred EeecCCEEEEEeCCCcHHHH-------HHHHHhCCCCCeE-EEEecCCEE
Confidence 335678999999 666664 5566655444455 566777764
No 134
>PF14577 SEO_C: Sieve element occlusion C-terminus
Probab=25.83 E-value=46 Score=27.11 Aligned_cols=30 Identities=30% Similarity=0.415 Sum_probs=22.3
Q ss_pred cccCCHHH----HHHHHHHHHHhCCccchhhhHH
Q 039995 24 YAINTSEE----LNFVKDIAAATGVVLDPVYSGK 53 (118)
Q Consensus 24 YG~~t~e~----~~~I~~~a~~eGI~LDPVYTgK 53 (118)
||-.+.+= ..+++.+|+..+|.||.+|-||
T Consensus 39 YGG~D~eWIq~Ft~~a~~va~~a~i~LEm~yvGK 72 (235)
T PF14577_consen 39 YGGEDMEWIQEFTKAARKVAKAADIQLEMVYVGK 72 (235)
T ss_pred ECCCCHHHHHHHHHHHHHHHHhcCCceEEEEecC
Confidence 45455442 2356777889999999999999
No 135
>KOG1395 consensus Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=25.40 E-value=2.1e+02 Score=25.52 Aligned_cols=53 Identities=17% Similarity=0.218 Sum_probs=40.7
Q ss_pred cccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecC
Q 039995 24 YAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTG 80 (118)
Q Consensus 24 YG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTG 80 (118)
...++.|.++..+++++.|||.--|-- .-|+++... +.+ ..++++.||.--+|
T Consensus 393 isitd~eclegfk~~srlEGIIPAlEs-sHAva~~~~-lck--~l~~~k~ivi~~sG 445 (477)
T KOG1395|consen 393 ISITDAECLEGFKQLSRLEGIIPALES-SHAVAGEAE-LCK--TLPEDKVIVINISG 445 (477)
T ss_pred EecChHHHHHHHHHHHHhcccccCCch-hhHHHHHHH-hcc--ccCCCcEEEEEecC
Confidence 567899999999999999999865544 357888653 433 57788888888887
No 136
>cd00830 KAS_III Ketoacyl-acyl carrier protein synthase III (KASIII) initiates the elongation in type II fatty acid synthase systems. It is found in bacteria and plants. Elongation of fatty acids in the type II systems occurs by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP. KASIII initiates this process by specifically using acetyl-CoA over acyl-CoA.
Probab=25.36 E-value=2.7e+02 Score=21.70 Aligned_cols=48 Identities=17% Similarity=0.241 Sum_probs=31.2
Q ss_pred HHHHHHHHHhCCccchh----------hhHHHHHHHHHHHHhCCCCCCCCeEEEEecCC
Q 039995 33 NFVKDIAAATGVVLDPV----------YSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGG 81 (118)
Q Consensus 33 ~~I~~~a~~eGI~LDPV----------YTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGG 81 (118)
..++.+++.-|++-|.+ +++-.+..|.+ +.+.+.+.+|++||++=.|.
T Consensus 254 ~~~~~~~~~lgl~~~~~~~~~~~~Gn~~sas~~~~L~~-~~~~~~~~~G~~vll~~~G~ 311 (320)
T cd00830 254 RIIEAVAKRLGLPEEKVVVNLDRYGNTSAASIPLALDE-AIEEGKLKKGDLVLLLGFGA 311 (320)
T ss_pred HHHHHHHHHhCCCHHHhhhhHHhhCcHHHHHHHHHHHH-HHHcCCCCCCCEEEEEEEch
Confidence 34444555566665554 35566777765 55556777899999987763
No 137
>COG3077 RelB DNA-damage-inducible protein J [DNA replication, recombination, and repair]
Probab=25.20 E-value=1.2e+02 Score=21.24 Aligned_cols=40 Identities=8% Similarity=0.151 Sum_probs=29.2
Q ss_pred CcccC-CHHHHHHHHHHHHHhCCccchhhh--HHHHHHHHHHHH
Q 039995 23 GYAIN-TSEELNFVKDIAAATGVVLDPVYS--GKAAYGMLNDMA 63 (118)
Q Consensus 23 GYG~~-t~e~~~~I~~~a~~eGI~LDPVYT--gKa~~gL~~~l~ 63 (118)
.+|.+ |+...-|.+.++++.+||.|+.+. .+.+.++.+ ..
T Consensus 25 ~mGlt~S~airm~L~~va~~~~lPfdl~~p~N~~tl~ai~e-~~ 67 (88)
T COG3077 25 EMGLTISDAIRMFLTKVAREGALPFDLRLPSNAETLQAIKE-LD 67 (88)
T ss_pred HhCCCHHHHHHHHHHHHHHcCCCCccccCcccHHHHHHHHH-HH
Confidence 34544 445667889999999999999997 666666653 44
No 138
>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated
Probab=25.07 E-value=2.1e+02 Score=24.38 Aligned_cols=57 Identities=12% Similarity=-0.001 Sum_probs=27.2
Q ss_pred CcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCC-CCeEEEEecCC
Q 039995 23 GYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWE-GRKVLFVHTGG 81 (118)
Q Consensus 23 GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~-g~rVLfiHTGG 81 (118)
..|...|++.++|++..++-....-..++-.....+.+.+.+ ..+. -.+|.|..||.
T Consensus 56 ~lGh~~p~i~~Ai~~q~~~~~~~~~~~~~~~~~~~la~~L~~--~~p~~~~~v~f~~SGs 113 (428)
T PRK07986 56 IHGYNHPQLNAAMKSQIDAMSHVMFGGITHPPAIELCRKLVA--MTPQPLECVFLADSGS 113 (428)
T ss_pred cCCCCCHHHHHHHHHHHhhcCCccccccCCHHHHHHHHHHHh--hCCCCcCEEEEeCCcH
Confidence 346667888888877665422111111223333344433433 1222 24666666554
No 139
>COG1334 FlaG Uncharacterized flagellar protein FlaG [Cell motility and secretion]
Probab=24.41 E-value=69 Score=23.61 Aligned_cols=22 Identities=23% Similarity=0.495 Sum_probs=20.2
Q ss_pred cCCHHHHHHHHHHHHHhCCccc
Q 039995 26 INTSEELNFVKDIAAATGVVLD 47 (118)
Q Consensus 26 ~~t~e~~~~I~~~a~~eGI~LD 47 (118)
.|+++.++..+.+...-||++|
T Consensus 96 IPpee~L~l~~r~~d~~gil~d 117 (120)
T COG1334 96 IPPEEALELAARMRDVIGILFD 117 (120)
T ss_pred CChHHHHHHHHHHHHhhhheee
Confidence 4888999999999999999988
No 140
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=24.06 E-value=1.4e+02 Score=20.21 Aligned_cols=37 Identities=16% Similarity=0.255 Sum_probs=28.5
Q ss_pred CcccCCHHHHHHHHHHHH--HhCCccchhhhHHHHHHHH
Q 039995 23 GYAINTSEELNFVKDIAA--ATGVVLDPVYSGKAAYGML 59 (118)
Q Consensus 23 GYG~~t~e~~~~I~~~a~--~eGI~LDPVYTgKa~~gL~ 59 (118)
++..+++.-.+++..+.. ...++.-|+=|||+...+.
T Consensus 5 ~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~ 43 (201)
T smart00487 5 GFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALL 43 (201)
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHH
Confidence 456678888888888776 5778889999999985544
No 141
>PRK08452 flagellar protein FlaG; Provisional
Probab=23.91 E-value=76 Score=23.30 Aligned_cols=22 Identities=18% Similarity=0.525 Sum_probs=20.2
Q ss_pred cCCHHHHHHHHHHHHHhCCccc
Q 039995 26 INTSEELNFVKDIAAATGVVLD 47 (118)
Q Consensus 26 ~~t~e~~~~I~~~a~~eGI~LD 47 (118)
.|+++.++.++.+.+.-|+++|
T Consensus 100 IP~Ee~L~l~~~m~e~~GlL~D 121 (124)
T PRK08452 100 IPSKEAIELMEYMRDVIGIIFD 121 (124)
T ss_pred CCCHHHHHHHHHHHHhhhheec
Confidence 4899999999999999999988
No 142
>TIGR01835 HMG-CoA-S_prok 3-hydroxy-3-methylglutaryl CoA synthase, prokaryotic clade. This clade of hydroxymethylglutaryl-CoA (HMG-CoA) synthases is found in a limited spectrum of mostly gram-positive bacteria which make isopentenyl pyrophosphate (IPP) via the mevalonate pathway. This pathway is found primarily in eukaryotes and archaea, but the bacterial homologs are distinct, having aparrently diverged after being laterally transferred from an early eukaryote. HMG-CoA synthase is the first step in the pathway and joins acetyl-CoA with acetoacetyl-CoA with the release of one molecule of CoA. The Borellia sequence may have resulted from a separate lateral transfer event.
Probab=23.65 E-value=1.5e+02 Score=24.74 Aligned_cols=34 Identities=18% Similarity=0.308 Sum_probs=25.8
Q ss_pred hhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCC
Q 039995 48 PVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGG 81 (118)
Q Consensus 48 PVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGG 81 (118)
-+|||=.+.+|...+..++.+.+|++|+++--|.
T Consensus 273 N~~sas~~l~L~~~l~~~~~~~~Gd~ill~s~Gs 306 (379)
T TIGR01835 273 NLYTGSLYLGLASLLENAFEDTTGDKIGLFSYGS 306 (379)
T ss_pred chHhHHHHHHHHHHHHhcccCCCCCEEEEEEecC
Confidence 5789989999886444323567899999998883
No 143
>PRK08088 4-aminobutyrate aminotransferase; Validated
Probab=23.44 E-value=3.1e+02 Score=22.92 Aligned_cols=59 Identities=17% Similarity=0.073 Sum_probs=31.1
Q ss_pred CcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhC-CCCCCCCeEEEEecCCc
Q 039995 23 GYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQN-PKKWEGRKVLFVHTGGL 82 (118)
Q Consensus 23 GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~-g~~~~g~rVLfiHTGGl 82 (118)
.+|...|++.+++++.+++.+...=+.++-.....+.+.+.+- + .....+++|+.||.-
T Consensus 54 ~lGh~~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-~~~~~~~~f~~sGse 113 (425)
T PRK08088 54 NTGHLHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEKMNQKVP-GDFAKKTLLVTTGSE 113 (425)
T ss_pred CCCCCCHHHHHHHHHHHhhCCCccccccCCHHHHHHHHHHHHhCC-CCCCCEEEEeCCcHH
Confidence 3566699999999988876442211222122333444444431 1 111247777777653
No 144
>cd00411 Asparaginase Asparaginase (amidohydrolase): Asparaginases are tetrameric enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases, one highly specific for asparagine and localised to the periplasm, and a second (asparaginase- glutaminase) present in the cytosol that hydrolyzises both asparagine and glutamine with similar specificities.
Probab=23.19 E-value=50 Score=27.25 Aligned_cols=15 Identities=27% Similarity=0.707 Sum_probs=12.3
Q ss_pred CeEEEEecCCccccc
Q 039995 72 RKVLFVHTGGLLGLF 86 (118)
Q Consensus 72 ~rVLfiHTGGl~glf 86 (118)
+||+.|+|||..+.-
T Consensus 1 ~~I~vi~TGGTIa~~ 15 (323)
T cd00411 1 KNILILYTGGTIAMV 15 (323)
T ss_pred CEEEEEECCchhhcc
Confidence 379999999987653
No 145
>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=23.17 E-value=2.8e+02 Score=23.17 Aligned_cols=57 Identities=11% Similarity=0.040 Sum_probs=28.0
Q ss_pred CcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCC-CCeEEEEecCC
Q 039995 23 GYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWE-GRKVLFVHTGG 81 (118)
Q Consensus 23 GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~-g~rVLfiHTGG 81 (118)
..|...|++.+++++..++-....-..|+-.....+.+.+.+ ..+. -.+|.|..||.
T Consensus 55 ~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~la~~l~~--~~p~~~~~v~f~~sGs 112 (423)
T PRK05964 55 THGHNHPYIDQAIREQLDRLDHVIFAGFTHEPAERLAQRLVA--LTPGGLDHVFFSDSGS 112 (423)
T ss_pred cCCCCCHHHHHHHHHHHhhCCCccccccCCHHHHHHHHHHHH--hCCCCCCEEEEeCCcH
Confidence 356678888888887665422111112333333333333333 1221 24666666654
No 146
>PRK00358 pyrH uridylate kinase; Provisional
Probab=23.14 E-value=1.1e+02 Score=23.44 Aligned_cols=14 Identities=36% Similarity=0.408 Sum_probs=11.1
Q ss_pred CCeEEEEecCCccc
Q 039995 71 GRKVLFVHTGGLLG 84 (118)
Q Consensus 71 g~rVLfiHTGGl~g 84 (118)
|.+++.+|.||..+
T Consensus 39 g~~vvlV~gGG~~a 52 (231)
T PRK00358 39 GVEVAIVVGGGNIF 52 (231)
T ss_pred CCeEEEEECCCHHH
Confidence 56899999998543
No 147
>PRK06777 4-aminobutyrate aminotransferase; Provisional
Probab=22.96 E-value=80 Score=26.58 Aligned_cols=31 Identities=19% Similarity=0.462 Sum_probs=26.0
Q ss_pred CCcccCCHHHHHHHHHHHHHhCCc--cchhhhH
Q 039995 22 LGYAINTSEELNFVKDIAAATGVV--LDPVYSG 52 (118)
Q Consensus 22 ~GYG~~t~e~~~~I~~~a~~eGI~--LDPVYTg 52 (118)
+|.-.++++-++.++++++++|++ .|-||||
T Consensus 211 ~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg 243 (421)
T PRK06777 211 GGFNVAPPEFMSALRTLCDEHGILLIADEVQTG 243 (421)
T ss_pred CCCccCCHHHHHHHHHHHHHcCCEEEEechhhC
Confidence 456678999999999999999974 6999875
No 148
>PF11657 Activator-TraM: Transcriptional activator TraM
Probab=22.68 E-value=79 Score=23.85 Aligned_cols=24 Identities=25% Similarity=0.522 Sum_probs=19.2
Q ss_pred CHHHHHHHHHHHHHhCCcc---chhhh
Q 039995 28 TSEELNFVKDIAAATGVVL---DPVYS 51 (118)
Q Consensus 28 t~e~~~~I~~~a~~eGI~L---DPVYT 51 (118)
++...+.|+++++++||.| ||+--
T Consensus 2 ~dk~~eiI~~IA~khgI~L~~DDPILi 28 (144)
T PF11657_consen 2 SDKIEEIIAEIARKHGIALSRDDPILI 28 (144)
T ss_pred CcHHHHHHHHHHHHcCCccCCCCchHH
Confidence 3456788999999999999 57753
No 149
>PRK04612 argD acetylornithine transaminase protein; Provisional
Probab=22.64 E-value=2.8e+02 Score=23.38 Aligned_cols=56 Identities=13% Similarity=0.204 Sum_probs=30.7
Q ss_pred CcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCC
Q 039995 23 GYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGG 81 (118)
Q Consensus 23 GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGG 81 (118)
..|...|++.+++++-.++- ...=+.+.-.....+.+.+.+- .+...+|.|..||.
T Consensus 53 ~lGh~~p~v~~ai~~q~~~~-~~~~~~~~~~~~~~la~~L~~~--~~~~~~v~f~~sGs 108 (408)
T PRK04612 53 GLGHNDPDLVAALTEQAGKL-WHTSNVFYSAPPLKLAEELVTA--SRFAEKVFLCNSGT 108 (408)
T ss_pred cCCCCCHHHHHHHHHHHHhc-cccccccCCHHHHHHHHHHHhh--CCCCCEEEEcCchH
Confidence 36777999999998866642 1111222233344444444431 22235777777765
No 150
>PRK07539 NADH dehydrogenase subunit E; Validated
Probab=22.18 E-value=2.4e+02 Score=20.66 Aligned_cols=50 Identities=22% Similarity=0.169 Sum_probs=36.8
Q ss_pred cccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCCc
Q 039995 24 YAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGL 82 (118)
Q Consensus 24 YG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGGl 82 (118)
||-.+++ +++.+|+..|++.--||.-=+|+.++. .-|+|+.+|.|-+|..
T Consensus 35 ~g~ip~~---~~~~iA~~l~v~~~~v~~v~tFY~~f~------~~p~gk~~I~VC~g~~ 84 (154)
T PRK07539 35 RGWVPDE---AIEAVADYLGMPAIDVEEVATFYSMIF------RQPVGRHVIQVCTSTP 84 (154)
T ss_pred hCCCCHH---HHHHHHHHhCcCHHHHHHHHHHHhhhC------cCCCCCEEEEEcCCch
Confidence 3446665 455667889999999998888888774 1346888888888753
No 151
>PRK07495 4-aminobutyrate aminotransferase; Provisional
Probab=22.11 E-value=2.6e+02 Score=23.70 Aligned_cols=57 Identities=14% Similarity=0.063 Sum_probs=30.2
Q ss_pred CcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCC--CeEEEEecCC
Q 039995 23 GYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEG--RKVLFVHTGG 81 (118)
Q Consensus 23 GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g--~rVLfiHTGG 81 (118)
-+|...|++.+++++..++-....-..++-.....+.+.+.+ ..+.+ .+|.|..||.
T Consensus 53 ~lGh~~p~v~~ai~~ql~~l~~~~~~~~~~~~~~~la~~l~~--~~p~~~~~~v~f~~SGs 111 (425)
T PRK07495 53 NTGHRHPRVIAAVKAQLDRFTHTCHQVVPYENYVRLAERLNA--LVPGDFAKKTIFVTTGA 111 (425)
T ss_pred ccCCCCHHHHHHHHHHHhhccCcccCccCCHHHHHHHHHHHH--hCCCCCCCEEEECCchH
Confidence 357779999999988766532221112222333333333433 12222 4788777775
No 152
>COG0351 ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism]
Probab=22.00 E-value=42 Score=27.65 Aligned_cols=32 Identities=31% Similarity=0.449 Sum_probs=25.3
Q ss_pred CCHHHHHHHHHHHHHhC---CccchhhhHHHHHHH
Q 039995 27 NTSEELNFVKDIAAATG---VVLDPVYSGKAAYGM 58 (118)
Q Consensus 27 ~t~e~~~~I~~~a~~eG---I~LDPVYTgKa~~gL 58 (118)
+++|..+.+.+.-++.+ +.+|||--+|.=..|
T Consensus 82 ~~~eiie~va~~l~~~~~~~vV~DPVmvaksG~~L 116 (263)
T COG0351 82 GSAEIIEVVAEKLKKYGIGPVVLDPVMVAKSGDPL 116 (263)
T ss_pred CCHHHHHHHHHHHHhcCCCcEEECceEEEcCCCcc
Confidence 47889999998888888 899999877754443
No 153
>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=21.95 E-value=3.1e+02 Score=23.52 Aligned_cols=56 Identities=11% Similarity=0.076 Sum_probs=29.7
Q ss_pred cccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCC-CeEEEEecCC
Q 039995 24 YAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEG-RKVLFVHTGG 81 (118)
Q Consensus 24 YG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g-~rVLfiHTGG 81 (118)
.|...|++.++|++-.++-....-..++-+....+.+.+.+ ..+.+ .+|.|..||.
T Consensus 70 lGh~~p~v~~Ai~~ql~~l~~~~~~~~~~~~~~~lae~L~~--~~p~~~~~v~f~~SGs 126 (460)
T PRK06916 70 HGHQVPELDEAIREQLNKIAHSTLLGLANVPSILLAEKLIE--VVPEGLKKVFYSDSGA 126 (460)
T ss_pred cCCCCHHHHHHHHHHHHhCCCccccccCCHHHHHHHHHHHH--hCCCCCCEEEEeCCcH
Confidence 46778999999988766522111112233334444444443 23222 4777777664
No 154
>PRK04280 arginine repressor; Provisional
Probab=21.91 E-value=49 Score=24.67 Aligned_cols=38 Identities=18% Similarity=0.240 Sum_probs=25.3
Q ss_pred CCCeEEEEec--CCcccccccHHHhhHhhcccccccccccccCCCCCC
Q 039995 70 EGRKVLFVHT--GGLLGLFDKVDQMAPLLKNWSRMDVHESVPRKDGTG 115 (118)
Q Consensus 70 ~g~rVLfiHT--GGl~glf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (118)
..++.+.||| |..+++ +.++++.+-..+- +...+|||+
T Consensus 88 ~~~~~vvikT~pG~A~~v-------a~~iD~~~~~eI~-GTIAGdDTi 127 (148)
T PRK04280 88 GAGNLLVLKTLPGNANSI-------GALIDNLDWDEIL-GTICGDDTC 127 (148)
T ss_pred eeCCEEEEEcCCChHHHH-------HHHHHhCCCCCeE-EEEecCCEE
Confidence 4678999999 666654 5566665544455 566777764
No 155
>TIGR00519 asnASE_I L-asparaginases, type I. Two related families of asparaginase are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity secreted enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type I of E. coli. Archaeal putative asparaginases are of this type but contain an extra ~ 80 residues in a conserved N-terminal region. These archaeal homologs are included in this model.
Probab=21.39 E-value=60 Score=27.04 Aligned_cols=15 Identities=20% Similarity=0.454 Sum_probs=12.5
Q ss_pred CeEEEEecCCccccc
Q 039995 72 RKVLFVHTGGLLGLF 86 (118)
Q Consensus 72 ~rVLfiHTGGl~glf 86 (118)
+||+.|+|||..+.-
T Consensus 2 ~~I~vi~TGGTIa~~ 16 (336)
T TIGR00519 2 KDISIISTGGTIASK 16 (336)
T ss_pred CEEEEEECCCccccc
Confidence 479999999987754
No 156
>PRK06918 4-aminobutyrate aminotransferase; Reviewed
Probab=21.13 E-value=3e+02 Score=23.32 Aligned_cols=57 Identities=12% Similarity=0.028 Sum_probs=29.9
Q ss_pred CcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCC--CeEEEEecCC
Q 039995 23 GYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEG--RKVLFVHTGG 81 (118)
Q Consensus 23 GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g--~rVLfiHTGG 81 (118)
..|...|++.++|++..++-....=+.++-.....+.+.+.+ ..+.+ .+|.|..||.
T Consensus 67 ~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~la~~L~~--~~p~~~~~~v~f~~sGs 125 (451)
T PRK06918 67 NVGHSHPKVKEALHKQVDQYIHTGFNVMMYEPYIELAEKLAA--LAPGSFDKKVLFLNSGA 125 (451)
T ss_pred CCCCCCHHHHHHHHHHHHhccCccccccccHHHHHHHHHHHH--hCCCCCCCEEEEcCCcH
Confidence 357779999999988776522111112222333344433433 22222 4777777764
No 157
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=21.08 E-value=3.2e+02 Score=23.92 Aligned_cols=56 Identities=20% Similarity=0.230 Sum_probs=40.0
Q ss_pred CCHHHHHHHHHHHHHhCCcc----------------chhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCCccc
Q 039995 27 NTSEELNFVKDIAAATGVVL----------------DPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGLLG 84 (118)
Q Consensus 27 ~t~e~~~~I~~~a~~eGI~L----------------DPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGGl~g 84 (118)
.+++..+.++...++.||.+ ||----|++..+.+.+.....+ |.+.|.+|+|-..+
T Consensus 173 ~~~~~~~~f~~~~~~~gi~~~~i~~HapYlINLASpd~e~rekSv~~~~~eL~rA~~L--Ga~~VV~HPGs~~~ 244 (413)
T PTZ00372 173 LSDETIDKFKENCKKYNYDPKFILPHGSYLINLANPDKEKREKSYDAFLDDLQRCEQL--GIKLYNFHPGSTVG 244 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCcceEEeecCceecCCCCCHHHHHHHHHHHHHHHHHHHHc--CCCEEEECCCcCCC
Confidence 57788888888888888753 3333357788888777665444 77899999997543
No 158
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=21.05 E-value=3.3e+02 Score=20.84 Aligned_cols=55 Identities=16% Similarity=0.252 Sum_probs=31.7
Q ss_pred cCCHHHHHHHHHHHHHhCCccc---hh----------hhHHHHHHHHHHHHhCCCCCCCCeEEEEecCCc
Q 039995 26 INTSEELNFVKDIAAATGVVLD---PV----------YSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGL 82 (118)
Q Consensus 26 ~~t~e~~~~I~~~a~~eGI~LD---PV----------YTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGGl 82 (118)
..+++..+.+++..++.||.+= |. .--+++.-+.+.+.....+ |.++|-+|+|..
T Consensus 41 ~~~~~~~~~l~~~~~~~gl~ls~h~p~~~nl~s~d~~~r~~~~~~l~~~i~~A~~l--Ga~~vv~h~g~~ 108 (273)
T smart00518 41 RLSEETAEKFKEALKENNIDVSVHAPYLINLASPDKEKVEKSIERLIDEIKRCEEL--GIKALVFHPGSY 108 (273)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECCceecCCCCCHHHHHHHHHHHHHHHHHHHHc--CCCEEEEccccc
Confidence 4678889999999998887541 21 1123333333322222123 556777899864
No 159
>PRK02362 ski2-like helicase; Provisional
Probab=20.98 E-value=1.1e+02 Score=27.78 Aligned_cols=64 Identities=17% Similarity=0.130 Sum_probs=40.8
Q ss_pred hhhhhhccccCCCcccCCHHHHHHHHH-HHH-HhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEE
Q 039995 11 LMTRQPRLSKGLGYAINTSEELNFVKD-IAA-ATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFV 77 (118)
Q Consensus 11 ~~~~~l~~~~g~GYG~~t~e~~~~I~~-~a~-~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfi 77 (118)
|+-..+..+...||-.++|--.+++.. +.. +.-+..=|+=+||++.+.+..+.. +.++.++|++
T Consensus 8 lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~---l~~~~kal~i 73 (737)
T PRK02362 8 LPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKA---IARGGKALYI 73 (737)
T ss_pred CCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHH---HhcCCcEEEE
Confidence 344444455567888999988888876 222 333555699999999997753322 2234566665
No 160
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=20.62 E-value=75 Score=19.81 Aligned_cols=27 Identities=15% Similarity=0.190 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHhCCc---cchhhhHHHHH
Q 039995 30 EELNFVKDIAAATGVV---LDPVYSGKAAY 56 (118)
Q Consensus 30 e~~~~I~~~a~~eGI~---LDPVYTgKa~~ 56 (118)
++.+.++.-++..|+. +||-||.|.-.
T Consensus 3 ~~~~~L~yka~~~G~~v~~v~~~~TSq~C~ 32 (69)
T PF07282_consen 3 QFRQRLEYKAEEYGIQVVEVDEAYTSQTCP 32 (69)
T ss_pred HHHHHHHHHHHHhCCEEEEECCCCCccCcc
Confidence 4567888888888976 58999988654
No 161
>TIGR02384 RelB_DinJ addiction module antitoxin, RelB/DinJ family. Plasmids may be maintained stably in bacterial populations through the action of addiction modules, in which a toxin and antidote are encoded in a cassette on the plasmid. In any daughter cell that lacks the plasmid, the toxin persists and is lethal after the antidote protein is depleted. Toxin/antitoxin pairs are also found on main chromosomes, and likely represent selfish DNA. Sequences in the seed for this alignment all were found adjacent to toxin genes. The resulting model appears to describe a narrower set of proteins than Pfam model pfam04221, although many in the scope of this model are not obviously paired with toxin proteins. Several toxin/antitoxin pairs may occur in a single species.
Probab=20.42 E-value=1.8e+02 Score=19.51 Aligned_cols=25 Identities=16% Similarity=0.255 Sum_probs=19.7
Q ss_pred CCHHHHHHHHHHHHHhCCccchhhh
Q 039995 27 NTSEELNFVKDIAAATGVVLDPVYS 51 (118)
Q Consensus 27 ~t~e~~~~I~~~a~~eGI~LDPVYT 51 (118)
+++...-|++++.++.|||.++...
T Consensus 28 ~s~ai~~fl~qvv~~~~lPF~~~~~ 52 (83)
T TIGR02384 28 PSTAIRMFLKQVIREQGLPFDLRLP 52 (83)
T ss_pred HHHHHHHHHHHHHHhCCCCCCcCCC
Confidence 3455778889999999999888765
No 162
>COG3695 Predicted methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair]
Probab=20.40 E-value=91 Score=22.54 Aligned_cols=39 Identities=15% Similarity=0.115 Sum_probs=27.6
Q ss_pred hhhhhhhhccccCCCcccCCHHHHHHHHHHHHHhCCccchh
Q 039995 9 YYLMTRQPRLSKGLGYAINTSEELNFVKDIAAATGVVLDPV 49 (118)
Q Consensus 9 ~~~~~~~l~~~~g~GYG~~t~e~~~~I~~~a~~eGI~LDPV 49 (118)
+-|||+.+.+..| .-+.+.+ .....+++.+.|||.++-.
T Consensus 53 s~lPWhRVvns~G-~isl~~~-~~~~Q~~lL~aEGv~~~~~ 91 (103)
T COG3695 53 SDLPWHRVVNSDG-RISLPGP-DKQRQRELLLAEGVEFSDT 91 (103)
T ss_pred CCCChhheecCCC-cccCCCc-cHHHHHHHHHHcCceeccC
Confidence 4689999988643 3444433 6677788889999988754
No 163
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=20.33 E-value=2.2e+02 Score=22.46 Aligned_cols=54 Identities=17% Similarity=0.200 Sum_probs=33.6
Q ss_pred CHHHHHHHHHHHHHhCCccchh-----h-----------hHHHHHHHHHHHHhCCCCCCCCeEEEEecCCcc
Q 039995 28 TSEELNFVKDIAAATGVVLDPV-----Y-----------SGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGLL 83 (118)
Q Consensus 28 t~e~~~~I~~~a~~eGI~LDPV-----Y-----------TgKa~~gL~~~l~~~g~~~~g~rVLfiHTGGl~ 83 (118)
++...+.++...++.++.+-++ | --|++..+.+.+.....+ |.+.|.+|+|-..
T Consensus 44 ~~~~~~~~~~~~~~~~~~~~~i~~Hapy~iNlas~~~~~r~~sv~~~~~~i~~A~~l--ga~~vv~H~G~~~ 113 (274)
T TIGR00587 44 EEEVIDWFKAALETNKNLSQIVLVHAPYLINLASPDEEKEEKSLDVLDEELKRCELL--GIMLYNFHPGSAL 113 (274)
T ss_pred CHHHHHHHHHHHHHcCCCCcceeccCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHc--CCCEEEECCCCCC
Confidence 4777888887777777653332 2 125555565555433334 6679999999653
No 164
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=20.33 E-value=83 Score=22.76 Aligned_cols=55 Identities=20% Similarity=0.296 Sum_probs=34.4
Q ss_pred CCcccCCHHHHHHHHHHHHHh-CCccchhhhHHHHHHHH---HHHHhCCCCCCCCeEEEE
Q 039995 22 LGYAINTSEELNFVKDIAAAT-GVVLDPVYSGKAAYGML---NDMAQNPKKWEGRKVLFV 77 (118)
Q Consensus 22 ~GYG~~t~e~~~~I~~~a~~e-GI~LDPVYTgKa~~gL~---~~l~~~g~~~~g~rVLfi 77 (118)
-|+-.+++--.+++..+.+.. -+..=|+-+||++..++ ..+.+.. ...+.+++++
T Consensus 17 ~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~-~~~~~~viii 75 (203)
T cd00268 17 LGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSP-KKDGPQALIL 75 (203)
T ss_pred cCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhc-ccCCceEEEE
Confidence 467778888888888877644 45566899999865433 3333321 1134566665
No 165
>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=20.32 E-value=3.5e+02 Score=22.54 Aligned_cols=56 Identities=11% Similarity=0.058 Sum_probs=28.9
Q ss_pred cccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCC--CCeEEEEecCC
Q 039995 24 YAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWE--GRKVLFVHTGG 81 (118)
Q Consensus 24 YG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~--g~rVLfiHTGG 81 (118)
.|...|++.+++++..++-....-+.++-.....+.+.+.+ ..+. ..+|.|..||.
T Consensus 47 lGh~~p~v~~a~~~ql~~~~~~~~~~~~~~~~~~la~~l~~--~~p~~~~~~v~f~~sGs 104 (420)
T TIGR00700 47 IGHSHPRVVDAVRTQVAEFTHTCFMVTPYEGYVALAEKLNR--IAPGSGPKKSVFFNSGA 104 (420)
T ss_pred CCCCCHHHHHHHHHHHHhccCccccccCChHHHHHHHHHHH--hCCCCCCCEEEEeCCcH
Confidence 56668999999988776532211112222333333333333 1221 14777777764
No 166
>PRK03341 arginine repressor; Provisional
Probab=20.07 E-value=57 Score=24.98 Aligned_cols=38 Identities=18% Similarity=0.114 Sum_probs=24.8
Q ss_pred CCCeEEEEec--CCcccccccHHHhhHhhcccccccccccccCCCCCC
Q 039995 70 EGRKVLFVHT--GGLLGLFDKVDQMAPLLKNWSRMDVHESVPRKDGTG 115 (118)
Q Consensus 70 ~g~rVLfiHT--GGl~glf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (118)
..++++.||| |-.+++ +.++++-+-..+- ....+|||+
T Consensus 105 ~~~~lvVIkT~pG~A~~v-------a~~iD~~~~~eIl-GTIAGDDTI 144 (168)
T PRK03341 105 ASANLAVLRTPPGAAQYL-------ASAIDRAALPEVV-GTIAGDDTV 144 (168)
T ss_pred eeCCEEEEEcCCChHHHH-------HHHHHhCCCCCeE-EEeecCCEE
Confidence 4678999999 655554 5566554444455 567778775
No 167
>PLN02541 uracil phosphoribosyltransferase
Probab=20.07 E-value=1.8e+02 Score=23.43 Aligned_cols=55 Identities=13% Similarity=0.273 Sum_probs=38.8
Q ss_pred hCCccchhh-hHHHHHHHHHHHHhCCCCCCCCeEEEEecCCcccccccHHHhhHhhcccccccc
Q 039995 42 TGVVLDPVY-SGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGLLGLFDKVDQMAPLLKNWSRMDV 104 (118)
Q Consensus 42 eGI~LDPVY-TgKa~~gL~~~l~~~g~~~~g~rVLfiHTGGl~glf~~~~~~~~~~~~~~~~~~ 104 (118)
.=|++||+= ||.++...++.+.+.|. +.++|.|+. +.+..+-++.+.++|++..+
T Consensus 159 ~VlllDpmLATGgS~~~ai~~L~~~Gv--~~~~I~~v~------~ias~~Gl~~i~~~fP~v~I 214 (244)
T PLN02541 159 RVLVVDPMLATGGTIVAAIDELVSRGA--SVEQIRVVC------AVAAPPALKKLSEKFPGLHV 214 (244)
T ss_pred EEEEECcchhhhHHHHHHHHHHHHcCC--CcccEEEEE------EEECHHHHHHHHHHCcCCEE
Confidence 357889976 48888888887777653 345788884 55666667777788887443
No 168
>PF12651 RHH_3: Ribbon-helix-helix domain
Probab=20.03 E-value=1.4e+02 Score=17.72 Aligned_cols=21 Identities=19% Similarity=0.254 Sum_probs=18.3
Q ss_pred CCHHHHHHHHHHHHHhCCccc
Q 039995 27 NTSEELNFVKDIAAATGVVLD 47 (118)
Q Consensus 27 ~t~e~~~~I~~~a~~eGI~LD 47 (118)
.++++.+-+..+++++||+.-
T Consensus 9 l~~el~~~L~~ls~~t~i~~S 29 (44)
T PF12651_consen 9 LDKELYEKLKELSEETGIPKS 29 (44)
T ss_pred cCHHHHHHHHHHHHHHCCCHH
Confidence 578999999999999999863
No 169
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=20.03 E-value=99 Score=30.01 Aligned_cols=13 Identities=31% Similarity=0.629 Sum_probs=11.4
Q ss_pred CCCeEEEEecCCc
Q 039995 70 EGRKVLFVHTGGL 82 (118)
Q Consensus 70 ~g~rVLfiHTGGl 82 (118)
...|||.||.||.
T Consensus 90 ~~~~~lllHaGG~ 102 (974)
T PRK13412 90 GKEKRILLHAGGQ 102 (974)
T ss_pred ccccEEEEecCCc
Confidence 5689999999995
Done!