Query 039995
Match_columns 118
No_of_seqs 132 out of 686
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 05:59:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039995.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039995hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1f2d_A 1-aminocyclopropane-1-c 99.5 9.5E-15 3.3E-19 116.7 8.2 80 12-92 257-336 (341)
2 4d9b_A D-cysteine desulfhydras 99.5 3.2E-15 1.1E-19 120.1 5.2 78 11-89 262-339 (342)
3 1tzj_A ACC deaminase, 1-aminoc 99.5 6.6E-14 2.2E-18 111.1 8.9 79 12-91 256-334 (338)
4 1j0a_A 1-aminocyclopropane-1-c 99.4 1.1E-13 3.7E-18 109.9 7.0 80 12-95 245-324 (325)
5 4d9i_A Diaminopropionate ammon 99.0 1.4E-10 4.8E-15 94.8 5.3 77 11-88 297-385 (398)
6 1v71_A Serine racemase, hypoth 99.0 2.1E-10 7.1E-15 90.9 5.1 73 11-88 245-317 (323)
7 3iau_A Threonine deaminase; py 99.0 4.6E-10 1.6E-14 90.9 6.8 71 12-85 280-350 (366)
8 3aey_A Threonine synthase; PLP 99.0 4.5E-10 1.5E-14 90.0 6.0 67 14-82 254-320 (351)
9 2zsj_A Threonine synthase; PLP 99.0 5E-10 1.7E-14 89.8 6.1 67 14-82 256-322 (352)
10 1ve5_A Threonine deaminase; ri 98.9 8.3E-10 2.8E-14 86.7 5.3 68 12-85 242-309 (311)
11 2gn0_A Threonine dehydratase c 98.9 2.8E-10 9.7E-15 91.2 2.6 75 11-88 259-333 (342)
12 2d1f_A Threonine synthase; ami 98.9 8.3E-10 2.8E-14 89.1 5.2 68 13-82 262-329 (360)
13 3l6b_A Serine racemase; pyrido 98.9 4.8E-10 1.6E-14 90.3 3.8 73 12-86 248-320 (346)
14 3ss7_X D-serine dehydratase; t 98.8 1.2E-09 4.2E-14 91.0 1.1 72 12-84 349-429 (442)
15 3tbh_A O-acetyl serine sulfhyd 98.8 6.5E-09 2.2E-13 83.3 5.0 68 12-82 237-304 (334)
16 4h27_A L-serine dehydratase/L- 98.7 1.1E-08 3.9E-13 82.9 5.7 65 13-82 269-342 (364)
17 1ve1_A O-acetylserine sulfhydr 98.7 1.1E-08 3.6E-13 80.3 5.2 64 16-83 230-293 (304)
18 1p5j_A L-serine dehydratase; l 98.7 1.5E-08 5.1E-13 82.5 5.5 70 12-82 268-342 (372)
19 1o58_A O-acetylserine sulfhydr 98.7 1.9E-08 6.5E-13 79.1 5.6 63 17-83 235-297 (303)
20 2egu_A Cysteine synthase; O-ac 98.7 1.7E-08 5.8E-13 79.2 5.3 62 17-82 234-295 (308)
21 2v03_A Cysteine synthase B; py 98.6 3.9E-08 1.3E-12 77.3 6.4 62 18-84 224-285 (303)
22 2pqm_A Cysteine synthase; OASS 98.6 2.5E-08 8.7E-13 80.0 4.9 70 13-85 244-313 (343)
23 1z7w_A Cysteine synthase; tran 98.6 3.1E-08 1.1E-12 78.3 4.9 68 12-82 232-299 (322)
24 1y7l_A O-acetylserine sulfhydr 98.6 3.3E-08 1.1E-12 77.9 4.9 65 17-84 240-304 (316)
25 3dwg_A Cysteine synthase B; su 98.6 1.8E-08 6E-13 80.4 2.6 68 13-83 231-300 (325)
26 2q3b_A Cysteine synthase A; py 98.5 1.1E-07 3.7E-12 74.8 5.0 63 18-83 238-301 (313)
27 2rkb_A Serine dehydratase-like 98.5 1.1E-07 3.9E-12 74.8 4.7 70 12-82 228-302 (318)
28 1e5x_A Threonine synthase; thr 98.4 2.9E-07 1E-11 77.7 5.9 67 16-85 372-438 (486)
29 1tdj_A Biosynthetic threonine 98.3 6.2E-07 2.1E-11 77.0 6.1 69 13-84 252-320 (514)
30 4aec_A Cysteine synthase, mito 98.3 3.8E-07 1.3E-11 76.6 4.7 67 13-82 341-407 (430)
31 1v8z_A Tryptophan synthase bet 98.2 1.4E-06 4.8E-11 70.1 5.6 65 13-82 309-374 (388)
32 1wkv_A Cysteine synthase; homo 98.1 2.5E-06 8.7E-11 70.3 5.1 59 21-82 313-371 (389)
33 2o2e_A Tryptophan synthase bet 98.1 3.1E-06 1.1E-10 70.1 5.3 63 16-82 343-405 (422)
34 1jbq_A B, cystathionine beta-s 98.1 4.3E-06 1.5E-10 70.0 6.0 60 20-83 342-401 (435)
35 1x1q_A Tryptophan synthase bet 98.0 5.6E-06 1.9E-10 68.2 5.5 62 16-81 341-402 (418)
36 1qop_B Tryptophan synthase bet 98.0 9.5E-06 3.2E-10 65.9 5.6 63 15-82 315-379 (396)
37 1vb3_A Threonine synthase; PLP 97.7 1.9E-05 6.4E-10 65.4 4.1 55 20-82 325-379 (428)
38 3pc3_A CG1753, isoform A; CBS, 97.7 3.6E-05 1.2E-09 64.7 4.9 62 18-83 292-353 (527)
39 1kl7_A Threonine synthase; thr 94.2 0.059 2E-06 46.0 5.3 57 23-82 392-452 (514)
40 3vc3_A Beta-cyanoalnine syntha 91.6 0.3 1E-05 38.9 5.6 55 24-81 264-318 (344)
41 3v7n_A Threonine synthase; ssg 86.3 0.81 2.8E-05 38.9 4.7 53 22-81 383-435 (487)
42 4f4f_A Threonine synthase; str 84.1 1.6 5.6E-05 36.7 5.6 53 23-82 365-417 (468)
43 3dmp_A Uracil phosphoribosyltr 73.0 2.5 8.6E-05 32.2 3.1 56 40-103 129-185 (217)
44 1vec_A ATP-dependent RNA helic 67.9 4.7 0.00016 27.9 3.4 62 16-77 15-77 (206)
45 3bor_A Human initiation factor 66.0 12 0.0004 27.0 5.3 56 22-77 48-104 (237)
46 1qde_A EIF4A, translation init 63.4 11 0.00039 26.4 4.7 57 21-77 31-88 (224)
47 3pey_A ATP-dependent RNA helic 62.7 8.9 0.0003 28.7 4.2 57 21-77 22-81 (395)
48 1fuu_A Yeast initiation factor 61.5 17 0.00059 27.2 5.7 57 21-77 38-95 (394)
49 1q0u_A Bstdead; DEAD protein, 60.4 9.4 0.00032 26.9 3.8 58 20-77 20-78 (219)
50 1qtw_A Endonuclease IV; DNA re 60.0 19 0.00065 26.0 5.5 72 27-100 44-131 (285)
51 3fht_A ATP-dependent RNA helic 58.6 11 0.00039 28.4 4.2 58 20-77 41-101 (412)
52 1t6n_A Probable ATP-dependent 57.9 15 0.00051 25.7 4.5 42 21-62 31-73 (220)
53 1xti_A Probable ATP-dependent 52.8 19 0.00065 27.0 4.6 56 22-77 26-82 (391)
54 1o22_A Orphan protein TM0875; 52.5 11 0.00039 27.6 3.2 27 25-51 27-53 (170)
55 1s2m_A Putative ATP-dependent 51.9 14 0.00049 28.0 3.8 58 20-77 37-95 (400)
56 3k1y_A Oxidoreductase; structu 48.0 20 0.00069 26.0 4.0 71 25-97 70-145 (191)
57 2oxc_A Probable ATP-dependent 47.7 26 0.00088 24.9 4.5 41 20-60 40-81 (230)
58 2j0s_A ATP-dependent RNA helic 46.9 24 0.00084 26.8 4.4 55 22-77 55-111 (410)
59 1lbu_A Muramoyl-pentapeptide c 45.9 25 0.00085 25.6 4.2 36 25-60 40-75 (213)
60 1hv8_A Putative ATP-dependent 44.2 11 0.00037 27.9 2.0 57 20-77 22-80 (367)
61 3lma_A Stage V sporulation pro 43.4 41 0.0014 27.4 5.5 55 27-85 235-313 (347)
62 2gxq_A Heat resistant RNA depe 39.5 25 0.00084 24.1 3.2 41 20-60 17-58 (207)
63 3u7r_A NADPH-dependent FMN red 38.5 27 0.00092 25.4 3.4 73 25-97 52-131 (190)
64 1xtt_A Probable uracil phospho 38.4 26 0.00088 26.5 3.3 52 42-103 135-187 (216)
65 3cf4_G Acetyl-COA decarboxylas 38.3 31 0.0011 24.3 3.6 33 23-55 42-74 (170)
66 1hnj_A Beta-ketoacyl-acyl carr 38.0 83 0.0028 23.5 6.2 45 36-81 252-306 (317)
67 3il3_A 3-oxoacyl-[acyl-carrier 36.3 95 0.0032 23.8 6.4 50 31-81 253-312 (323)
68 3hpw_C Protein CCDA; alpha+bet 35.3 15 0.00052 20.7 1.2 21 28-48 12-32 (36)
69 2x7v_A Probable endonuclease 4 33.4 50 0.0017 23.7 4.1 57 26-84 43-115 (287)
70 3fmo_B ATP-dependent RNA helic 33.2 41 0.0014 25.4 3.8 57 21-77 109-168 (300)
71 3bkh_A Phikz144, lytic transgl 32.8 57 0.002 25.0 4.6 36 25-60 40-75 (268)
72 3erv_A Putative C39-like pepti 32.6 20 0.00069 27.5 1.9 52 21-82 102-153 (236)
73 3d2y_A N-acetylmuramoyl-L-alan 31.8 62 0.0021 24.8 4.6 36 25-60 217-253 (261)
74 4dfe_A 3-oxoacyl-[acyl-carrier 31.8 1.3E+02 0.0044 22.9 6.4 48 33-81 265-322 (333)
75 3gwa_A 3-oxoacyl-(acyl-carrier 31.3 1.3E+02 0.0044 23.5 6.5 49 32-81 296-354 (365)
76 3svl_A Protein YIEF; E. coli C 30.8 67 0.0023 22.9 4.4 72 27-98 59-136 (193)
77 3eiq_A Eukaryotic initiation f 30.1 56 0.0019 24.6 4.0 56 22-77 58-114 (414)
78 2z0m_A 337AA long hypothetical 29.8 52 0.0018 23.9 3.7 39 22-60 12-51 (337)
79 3ber_A Probable ATP-dependent 29.6 29 0.001 25.2 2.3 39 21-59 60-99 (249)
80 3fmp_B ATP-dependent RNA helic 29.1 43 0.0015 26.5 3.3 40 21-60 109-151 (479)
81 2vzf_A NADH-dependent FMN redu 28.7 57 0.0019 22.9 3.7 72 27-99 56-131 (197)
82 3mfq_A TROA, high-affinity zin 28.3 1.2E+02 0.0039 23.2 5.6 50 25-79 194-246 (282)
83 4fxe_A Antitoxin RELB; toxin/a 28.3 75 0.0026 20.4 3.9 33 28-60 28-64 (79)
84 4hqf_A Thrombospondin-related 27.6 1.8E+02 0.0061 21.4 6.4 55 29-84 87-141 (281)
85 4hs4_A Chromate reductase; tri 27.1 78 0.0027 22.7 4.2 71 27-97 60-136 (199)
86 3s21_A 3-oxoacyl-[ACP] synthas 26.5 1.4E+02 0.0047 22.9 5.8 49 32-81 276-334 (345)
87 2j6v_A UV endonuclease, UVDE; 26.3 1.1E+02 0.0038 23.6 5.3 70 29-101 102-185 (301)
88 4hqo_A Sporozoite surface prot 25.5 1.3E+02 0.0044 22.1 5.3 55 29-84 84-138 (266)
89 3gju_A Putative aminotransfera 25.0 33 0.0011 27.0 2.0 31 22-52 234-266 (460)
90 1nla_A Transcriptional repress 24.9 51 0.0017 20.6 2.5 23 26-48 13-35 (64)
91 1baz_A ARC repressor; transcri 24.6 58 0.002 19.1 2.6 22 26-47 13-34 (53)
92 1i5e_A Uracil phosphoribosyltr 24.5 62 0.0021 23.8 3.3 38 38-79 122-160 (209)
93 4pga_A Glutaminase-asparaginas 24.4 29 0.001 27.8 1.6 15 71-85 9-23 (337)
94 3fvw_A Putative NAD(P)H-depend 24.2 97 0.0033 21.8 4.2 72 27-98 54-137 (192)
95 1wsa_A Asparaginase, asparagin 23.6 35 0.0012 27.2 1.9 14 72-85 4-17 (330)
96 1agx_A Glutaminase-asparaginas 23.5 33 0.0011 27.3 1.7 14 72-85 2-15 (331)
97 3aam_A Endonuclease IV, endoiv 22.7 1E+02 0.0035 22.1 4.2 54 27-82 46-112 (270)
98 1nns_A L-asparaginase II; amid 22.7 33 0.0011 27.2 1.6 14 72-85 2-15 (326)
99 3ll5_A Gamma-glutamyl kinase r 22.7 70 0.0024 23.9 3.4 25 54-84 28-53 (249)
100 3i5t_A Aminotransferase; pyrid 22.7 39 0.0013 27.1 2.0 31 22-52 234-266 (476)
101 1rif_A DAR protein, DNA helica 22.6 48 0.0016 24.3 2.3 35 25-59 112-147 (282)
102 1o7j_A L-asparaginase; atomic 22.2 34 0.0012 27.1 1.6 14 72-85 5-18 (327)
103 2wlt_A L-asparaginase; hydrola 21.9 35 0.0012 27.1 1.6 15 72-86 6-20 (332)
104 4a7w_A Uridylate kinase; trans 21.7 98 0.0033 23.0 4.0 14 71-84 46-59 (240)
105 3txv_A Probable tagatose 6-pho 21.4 56 0.0019 27.7 2.8 21 23-43 25-45 (450)
106 3tfu_A Adenosylmethionine-8-am 21.1 48 0.0017 26.4 2.2 31 22-52 247-279 (457)
107 3nxk_A Cytoplasmic L-asparagin 21.0 37 0.0013 27.2 1.6 14 72-85 9-22 (334)
108 1zow_A 3-oxoacyl-[acyl-carrier 21.0 2.3E+02 0.0077 20.9 5.9 44 38-82 248-301 (313)
109 3p9n_A Possible methyltransfer 20.7 93 0.0032 21.0 3.4 36 44-79 117-154 (189)
110 1ub0_A THID, phosphomethylpyri 20.5 55 0.0019 23.6 2.3 30 22-52 76-108 (258)
111 2ba3_A NIKA; dimer, bacterial 20.3 67 0.0023 18.1 2.2 20 26-45 21-40 (51)
No 1
>1f2d_A 1-aminocyclopropane-1-carboxylate deaminase; carbon-carbon L open twisted alpha/beta, lyase; HET: PLP; 2.00A {Williopsis saturnus} SCOP: c.79.1.1 PDB: 1j0e_A* 1j0d_A* 1j0c_A*
Probab=99.55 E-value=9.5e-15 Score=116.67 Aligned_cols=80 Identities=24% Similarity=0.338 Sum_probs=70.3
Q ss_pred hhhhhccccCCCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCCcccccccHHH
Q 039995 12 MTRQPRLSKGLGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGLLGLFDKVDQ 91 (118)
Q Consensus 12 ~~~~l~~~~g~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGGl~glf~~~~~ 91 (118)
.|..++++.+++|+++++|..++++.+++++||++||+|||++++++++ +.+.+.+.++++||+|||||.++++++.+.
T Consensus 257 ~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~egi~~ep~~sa~alaa~~~-~~~~~~~~~~~~Vv~i~tGG~~~~~~~~~~ 335 (341)
T 1f2d_A 257 DFTLDTRFAYPCYGVPNEGTIEAIRTCAEQEGVLTDPVYEGKSMQGLIA-LIKEDYFKPGANVLYVHLGGAPALSAYSSF 335 (341)
T ss_dssp CCCEECTTSTTBTTBCCHHHHHHHHHHHHHHSCCCCTTTHHHHHHHHHH-HHHTTCSCTTCEEEEEECCCGGGGGGGGGG
T ss_pred eEEEecCcccceEecCCHHHHHHHHHHHHHcCCccccchHHHHHHHHHH-HHHhCCCCCCCeEEEEECCchHHhhhhHHH
Confidence 3456678899999999999999999999999999999999999999997 555556777899999999999999887665
Q ss_pred h
Q 039995 92 M 92 (118)
Q Consensus 92 ~ 92 (118)
+
T Consensus 336 ~ 336 (341)
T 1f2d_A 336 F 336 (341)
T ss_dssp C
T ss_pred h
Confidence 4
No 2
>4d9b_A D-cysteine desulfhydrase; fold type II PLP-dependent enzyme or tryptophan synthase BET like family, PLP dependent enzyme, lyase; HET: PMP; 1.67A {Salmonella typhimurium} PDB: 4d96_A* 4d9c_A* 4d9e_A* 4d9f_A* 4d97_A* 4d8w_A* 4d8u_A* 4d8t_A* 4d92_A* 4d99_A*
Probab=99.55 E-value=3.2e-15 Score=120.09 Aligned_cols=78 Identities=32% Similarity=0.488 Sum_probs=69.3
Q ss_pred hhhhhhccccCCCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCCcccccccH
Q 039995 11 LMTRQPRLSKGLGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGLLGLFDKV 89 (118)
Q Consensus 11 ~~~~~l~~~~g~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGGl~glf~~~ 89 (118)
.+|..+.++.+.+|+++++|..++++.+++++||++||+|||++++++++.+.+ +.++++++||+|||||.++++++.
T Consensus 262 ~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~~epsYsa~a~aa~~~~~~~-~~~~~~~~Vv~i~tGGn~~~~~~~ 339 (342)
T 4d9b_A 262 ADIHLWDDYFAPGYGVPNDAGMEAVKLLASLEGVLLDPVYTGKAMAGLIDGISQ-KRFNDDGPILFIHTGGAPALFAYH 339 (342)
T ss_dssp CCCEEECTTSTTCTTCCCHHHHHHHHHHHHHHSCCCCTTTHHHHHHHHHHHHHH-TCSSSSSCEEEEECCCTTHHHHHS
T ss_pred cceEEEecCCCceEecCCHHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHc-CCCCCCCeEEEEECCCccchhhcc
Confidence 456667788999999999999999999999999999999999999999975544 567789999999999999998764
No 3
>1tzj_A ACC deaminase, 1-aminocyclopropane-1-carboxylate deaminase; substrate, PLP, crystal, complex, hydrolase; HET: PLP; 1.99A {Pseudomonas SP} SCOP: c.79.1.1 PDB: 1rqx_A* 1tz2_A* 1tyz_A* 1tzk_A* 1tzm_A*
Probab=99.50 E-value=6.6e-14 Score=111.09 Aligned_cols=79 Identities=29% Similarity=0.413 Sum_probs=68.9
Q ss_pred hhhhhccccCCCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCCcccccccHHH
Q 039995 12 MTRQPRLSKGLGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGLLGLFDKVDQ 91 (118)
Q Consensus 12 ~~~~l~~~~g~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGGl~glf~~~~~ 91 (118)
.|..++++.+.+|+++++|..++++.+++++||++||+|||++++++++ +.+.+.++++++||+|||||.++++.+.+.
T Consensus 256 ~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~ep~ysa~alaa~~~-~~~~~~~~~~~~Vv~i~tGG~~~~~~~~~~ 334 (338)
T 1tzj_A 256 DVVLDERFAGPEYGLPNEGTLEAIRLCARTEGMLTDPVYEGKSMHGMIE-MVRNGEFPEGSRVLYAHLGGVPALNGYSFI 334 (338)
T ss_dssp GCEEECTTSCSBTTBCCHHHHHHHHHHHHHHSCCCCTTTHHHHHHHHHH-HHHTTCSCTTCEEEEEECCCGGGGGGGTGG
T ss_pred cEEEecCcccceeecCCHHHHHHHHHHHHhcCCccccchHHHHHHHHHH-HHHcCCCCCCCeEEEEECCCcccccchHHH
Confidence 4556778899999999999999999999999999999999999999997 444456767899999999999998876443
No 4
>1j0a_A 1-aminocyclopropane-1-carboxylate deaminase; PLP dependent, lyase; HET: PLP; 2.50A {Pyrococcus horikoshii} SCOP: c.79.1.1 PDB: 1j0b_A*
Probab=99.45 E-value=1.1e-13 Score=109.94 Aligned_cols=80 Identities=35% Similarity=0.634 Sum_probs=68.8
Q ss_pred hhhhhccccCCCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCCcccccccHHH
Q 039995 12 MTRQPRLSKGLGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGLLGLFDKVDQ 91 (118)
Q Consensus 12 ~~~~l~~~~g~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGGl~glf~~~~~ 91 (118)
++..+.++.+. |+++++|..++++.+++++||++||+|||++++++++.+ +.+.+ +++||+|||||.++++++.+.
T Consensus 245 ~~~~~~~~~~~-~~v~d~e~~~a~~~l~~~~gi~~ep~ssa~a~aa~~~~~-~~~~~--~~~Vv~i~tGG~~~~~~~~~~ 320 (325)
T 1j0a_A 245 RPELYDYSFGE-YGKITGEVAQIIRKVGTREGIILDPVYTGKAFYGLVDLA-RKGEL--GEKILFIHTGGISGTFHYGDK 320 (325)
T ss_dssp CCEEEECSTTS-TTCCCHHHHHHHHHHHHHHSCCCCTTTHHHHHHHHHHHH-HTTCS--CSEEEEEECCCHHHHHHTHHH
T ss_pred CcEEecCcccC-CCCCCHHHHHHHHHHHHhhCcccccchHHHHHHHHHHHH-HcCCC--CCcEEEEECCCchhhhchHHH
Confidence 44556677888 999999999999999999999999999999999998744 44444 889999999999999988887
Q ss_pred hhHh
Q 039995 92 MAPL 95 (118)
Q Consensus 92 ~~~~ 95 (118)
+.++
T Consensus 321 ~~~~ 324 (325)
T 1j0a_A 321 LLSL 324 (325)
T ss_dssp HHTT
T ss_pred Hhhc
Confidence 7654
No 5
>4d9i_A Diaminopropionate ammonia-lyase; fold type II PLP-dependent enzyme, tryptophan synthase beta like PLP-dependent enzymes superfamily; HET: IT1; 2.00A {Escherichia coli} PDB: 4d9g_A* 4d9n_A* 4d9k_A* 4d9m_A*
Probab=99.05 E-value=1.4e-10 Score=94.85 Aligned_cols=77 Identities=10% Similarity=-0.081 Sum_probs=65.2
Q ss_pred hhhhhhccccCCCcccCCHHHHHHHHHHHHHhC----CccchhhhHHHHHHHHHHH--------HhCCCCCCCCeEEEEe
Q 039995 11 LMTRQPRLSKGLGYAINTSEELNFVKDIAAATG----VVLDPVYSGKAAYGMLNDM--------AQNPKKWEGRKVLFVH 78 (118)
Q Consensus 11 ~~~~~l~~~~g~GYG~~t~e~~~~I~~~a~~eG----I~LDPVYTgKa~~gL~~~l--------~~~g~~~~g~rVLfiH 78 (118)
+.|..+.++.+.+|..+++|..++++.++++|| |++||. ||++++++++.+ ++.+.+.++++||+||
T Consensus 297 ~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~eG~~~~i~~eps-sa~alaa~~~~~~~~~~~~l~~~~~~~~~~~Vv~i~ 375 (398)
T 4d9i_A 297 LGWEILRNCATQFISCQDSVAALGMRVLGNPYGNDPRIISGES-GAVGLGVLAAVHYHPQRQSLMEKLALNKDAVVLVIS 375 (398)
T ss_dssp HHHHHHHHHCCEEEEECTHHHHHHHHHHHSCSTTCCCCCCCHH-HHHHHHHHHHHHHSTTHHHHHHHTTCCTTCEEEEEE
T ss_pred HHHHHHHHcCCeEEEECHHHHHHHHHHHHHhhCCCCcEEECch-HHHHHHHHHHhhhhhhhHHHHHhcCCCCCCEEEEEe
Confidence 346677888999999999999999999999999 999999 999999998743 3445677899999999
Q ss_pred cCCccccccc
Q 039995 79 TGGLLGLFDK 88 (118)
Q Consensus 79 TGGl~glf~~ 88 (118)
|||...+..+
T Consensus 376 tGG~~d~~~~ 385 (398)
T 4d9i_A 376 TEGDTDVKHY 385 (398)
T ss_dssp CBCCSSHHHH
T ss_pred CCCCCCHHHH
Confidence 9997665433
No 6
>1v71_A Serine racemase, hypothetical protein C320.14 in chromosome III; dimer, PLP, isomerase; HET: PLP; 1.70A {Schizosaccharomyces pombe} SCOP: c.79.1.1 PDB: 1wtc_A* 2zpu_A* 2zr8_A*
Probab=99.02 E-value=2.1e-10 Score=90.88 Aligned_cols=73 Identities=14% Similarity=0.109 Sum_probs=62.5
Q ss_pred hhhhhhccccCCCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCCccccccc
Q 039995 11 LMTRQPRLSKGLGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGLLGLFDK 88 (118)
Q Consensus 11 ~~~~~l~~~~g~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGGl~glf~~ 88 (118)
..|..++++.+++|..+++|..++++.+++++||++||.| |++++++++ +.+ .+ ++++||+|||||..++..+
T Consensus 245 ~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~eps~-a~alaa~~~-~~~--~~-~~~~vv~i~tGg~~~~~~~ 317 (323)
T 1v71_A 245 YTFSIIKEKVDDILTVSDEELIDCLKFYAARMKIVVEPTG-CLSFAAARA-MKE--KL-KNKRIGIIISGGNVDIERY 317 (323)
T ss_dssp HHHHHHHHHCCEEEEECHHHHHHHHHHHHHHTCCCCCGGG-GHHHHHHHH-TGG--GG-TTCEEEEEECBCCCCHHHH
T ss_pred HHHHHHHHhCCEEEEECHHHHHHHHHHHHHhcCeEEcHHH-HHHHHHHHH-hHH--hc-CCCeEEEEeCCCCCCHHHH
Confidence 3456777889999999999999999999999999999997 799999986 443 24 6899999999999887654
No 7
>3iau_A Threonine deaminase; pyridoxal phosphate, amino-acid biosynthesis, defensive PROT jasmonic acid pathway, jasmonic acid,structural genomics; HET: LLP 15P; 2.35A {Solanum lycopersicum}
Probab=99.01 E-value=4.6e-10 Score=90.90 Aligned_cols=71 Identities=10% Similarity=0.022 Sum_probs=61.9
Q ss_pred hhhhhccccCCCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCCcccc
Q 039995 12 MTRQPRLSKGLGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGLLGL 85 (118)
Q Consensus 12 ~~~~l~~~~g~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGGl~gl 85 (118)
.|..+.++.+.+|..+++|..++|+.+++++||++||. ||++++++++.+.+ +.+ ++++||+|||||-..+
T Consensus 280 ~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~ep~-sa~alaa~~~~~~~-~~~-~g~~Vv~i~tGgn~d~ 350 (366)
T 3iau_A 280 TFAKCQELIDGMVLVANDGISAAIKDVYDEGRNILETS-GAVAIAGAAAYCEF-YKI-KNENIVAIASGANMDF 350 (366)
T ss_dssp HHHHHHHHCCEEEEECHHHHHHHHHHHHHHHSCCCCHH-HHHHHHHHHHHHHH-TTC-CSCEEEEEECBCCCCG
T ss_pred HHHHHHhcCCCceeECHHHHHHHHHHHHHHcCcEEcHH-HHHHHHHHHHHHHh-cCC-CCCeEEEEeCCCCCCH
Confidence 46667788899999999999999999999999999999 99999999875444 455 4899999999997665
No 8
>3aey_A Threonine synthase; PLP, pyridoxal phosphate, lyase; 1.92A {Thermus thermophilus} PDB: 1uin_A* 1uim_A* 3aex_A* 1v7c_A
Probab=98.99 E-value=4.5e-10 Score=90.03 Aligned_cols=67 Identities=22% Similarity=0.251 Sum_probs=59.4
Q ss_pred hhhccccCCCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCCc
Q 039995 14 RQPRLSKGLGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGL 82 (118)
Q Consensus 14 ~~l~~~~g~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGGl 82 (118)
..++++.+.+|..+++|..++++.+++++||++||. ||++++++++ +.+.+.+.++++||+|||||.
T Consensus 254 ~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~eps-sa~alaa~~~-~~~~~~~~~~~~vv~i~tg~~ 320 (351)
T 3aey_A 254 RAKEESGGVIEAVTDEEILFAYRYLAREEGIFCEPA-SAAAMAGVFK-LLREGRLEPESTVVLTLTGHG 320 (351)
T ss_dssp HHHHHHTCEEEEECHHHHHHHHHHHHHHTCCCBCHH-HHHHHHHHHH-HHHTTCSCTTCEEEEEECBBG
T ss_pred HHHHHhCCeEEEECHHHHHHHHHHHHHhCCEEECch-HHHHHHHHHH-HHHhcCCCCCCeEEEEECCCC
Confidence 346778889999999999999999999999999999 9999999986 555566777899999999985
No 9
>2zsj_A Threonine synthase; PLP dependent enzyme, lyase; HET: PLP; 1.80A {Aquifex aeolicus}
Probab=98.99 E-value=5e-10 Score=89.81 Aligned_cols=67 Identities=27% Similarity=0.258 Sum_probs=59.6
Q ss_pred hhhccccCCCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCCc
Q 039995 14 RQPRLSKGLGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGL 82 (118)
Q Consensus 14 ~~l~~~~g~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGGl 82 (118)
..++++.+.+|..+++|..++++.+++++||++||. ||++++++++ +.+.+.+.++++||+|||||.
T Consensus 256 ~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~eps-sa~alaa~~~-~~~~~~~~~~~~vv~i~tg~~ 322 (352)
T 2zsj_A 256 KAAQESGGKIDAVSDSEILYAYKLIASTEGVFCEPA-SAASVAGLIK-LVREGFFKGGEVVTCTLTGNG 322 (352)
T ss_dssp HHHHHHTCEEEEECHHHHHHHHHHHHHHHCCCBCHH-HHHHHHHHHH-HHHTTCCCSCCEEEEEECBBG
T ss_pred HHHHHhCCeEEEECHHHHHHHHHHHHHhCCeeECch-HHHHHHHHHH-HHHhCCCCCCCeEEEEeCCCC
Confidence 446778889999999999999999999999999999 9999999986 555566777899999999985
No 10
>1ve5_A Threonine deaminase; riken structural genomics/Pro initiative, RSGI, structural genomics, lyase; HET: PLP; 2.15A {Thermus thermophilus} SCOP: c.79.1.1
Probab=98.93 E-value=8.3e-10 Score=86.69 Aligned_cols=68 Identities=12% Similarity=0.080 Sum_probs=58.6
Q ss_pred hhhhhccccCCCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCCcccc
Q 039995 12 MTRQPRLSKGLGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGLLGL 85 (118)
Q Consensus 12 ~~~~l~~~~g~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGGl~gl 85 (118)
.|..+.++.+.+|..+++|..++++.+++++||++||. ||++++++++ +.+. . +++||+|||||...+
T Consensus 242 ~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~eps-sa~alaa~~~-~~~~---~-~~~vv~i~tgg~~d~ 309 (311)
T 1ve5_A 242 TFPILRERVDGILTVSEEALLEAERLLFTRTKQVVEPT-GALPLAAVLE-HGAR---L-PQTLALLLSGGNRDF 309 (311)
T ss_dssp THHHHHHHCCEEEEECHHHHHHHHHHHHHHTCBCCCGG-GGHHHHHHHH-HGGG---S-CSEEEEEECBCCCCC
T ss_pred HHHHHHhcCCEEEEECHHHHHHHHHHHHHhcCceEchH-HHHHHHHHHh-hhhc---c-CCEEEEEECCCCCCC
Confidence 44556677899999999999999999999999999999 9999999986 4443 3 789999999997653
No 11
>2gn0_A Threonine dehydratase catabolic; TDCB, biodegradative threonine deaminase, PLP, threonine DEH L-threonine metabolism; HET: LLP; 1.70A {Salmonella typhimurium} PDB: 2gn1_A* 2gn2_A*
Probab=98.93 E-value=2.8e-10 Score=91.21 Aligned_cols=75 Identities=16% Similarity=0.104 Sum_probs=62.4
Q ss_pred hhhhhhccccCCCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCCccccccc
Q 039995 11 LMTRQPRLSKGLGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGLLGLFDK 88 (118)
Q Consensus 11 ~~~~~l~~~~g~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGGl~glf~~ 88 (118)
+.+..+.++.+.+|..+++|..++++.+++++||++||. ||++++++++ +.+.+.+ ++++||+|||||...+..+
T Consensus 259 ~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~~eps-sa~alaa~~~-~~~~~~~-~~~~Vv~i~tGg~~d~~~~ 333 (342)
T 2gn0_A 259 LTYEIVRELVDDIVLVSEDEIRNSMIALIQRNKVITEGA-GALACAALLS-GKLDSHI-QNRKTVSIISGGNIDLSRV 333 (342)
T ss_dssp HHHHHHHHHCCEEEEECHHHHHHHHHHHHHHHCBCCCTG-GGHHHHHHHH-TTTHHHH-TTSEEEEEECBCCCCHHHH
T ss_pred HHHHHHHHcCCEEEEECHHHHHHHHHHHHHHcCeEEcHH-HHHHHHHHHH-hhhhccC-CCCEEEEEECCCCCCHHHH
Confidence 455666778899999999999999999999999999999 9999999985 3321223 5899999999998876544
No 12
>2d1f_A Threonine synthase; amino acid synthesis, pyridoxal-5'-phosphate, PLP, lyase; HET: PLP; 2.50A {Mycobacterium tuberculosis}
Probab=98.93 E-value=8.3e-10 Score=89.07 Aligned_cols=68 Identities=25% Similarity=0.271 Sum_probs=59.4
Q ss_pred hhhhccccCCCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCCc
Q 039995 13 TRQPRLSKGLGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGL 82 (118)
Q Consensus 13 ~~~l~~~~g~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGGl 82 (118)
...++++.+.+|..+++|..++++.+++++||++||. ||++++++++... .+.+.++++||+|||||.
T Consensus 262 ~~~~~~~~~~~~~V~d~e~~~a~~~l~~~eGi~~eps-sa~alaa~~~~~~-~~~~~~~~~vv~i~tg~~ 329 (360)
T 2d1f_A 262 VEAQQQSKGRFLAASDEEILAAYHLVARVEGVFVEPA-SAASIAGLLKAID-DGWVARGSTVVCTVTGNG 329 (360)
T ss_dssp HHHHHHHTCEEEEECHHHHHHHHHHHHHHHCCCBCHH-HHHHHHHHHHHHH-HTSSCTTCEEEEEECBBG
T ss_pred HHHHHHhCCeEEEECHHHHHHHHHHHHHhcCeeECch-HHHHHHHHHHHHH-hCCCCCCCeEEEEeCCCC
Confidence 3456778889999999999999999999999999999 9999999987444 356667899999999985
No 13
>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP; 1.50A {Homo sapiens} SCOP: c.79.1.0 PDB: 3l6r_A* 3hmk_A* 3l6c_A*
Probab=98.92 E-value=4.8e-10 Score=90.30 Aligned_cols=73 Identities=15% Similarity=0.107 Sum_probs=61.2
Q ss_pred hhhhhccccCCCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCCccccc
Q 039995 12 MTRQPRLSKGLGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGLLGLF 86 (118)
Q Consensus 12 ~~~~l~~~~g~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGGl~glf 86 (118)
.|..+.++.+..|..+++|..++++.+++++||++||. ||++++++++...+ +.++++++|+++||||...+.
T Consensus 248 ~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~~eps-sa~alaa~~~~~~~-~~~~~~~~Vv~i~sGG~~d~~ 320 (346)
T 3l6b_A 248 TWPIIRDLVDDIFTVTEDEIKCATQLVWERMKLLIEPT-AGVGVAAVLSQHFQ-TVSPEVKNICIVLSGGNVDLT 320 (346)
T ss_dssp HHHHHHHHCCEEEEECHHHHHHHHHHHHHHHCCCCCHH-HHHHHHHHHSGGGG-GSCTTCCEEEEEECBCCCCTT
T ss_pred HHHHHHHcCCeEEEECHHHHHHHHHHHHHHCCcEEcHH-HHHHHHHHHHhhhh-hccCCCCeEEEEcCCCCCCHH
Confidence 34556778889999999999999999999999999999 99999999853333 344578999999999977653
No 14
>3ss7_X D-serine dehydratase; type II fold, ALFA,beta-elimination, P 5'-phosphate, lyase; HET: PLP; 1.55A {Escherichia coli} PDB: 3ss9_X* 3r0x_A* 3r0z_A
Probab=98.76 E-value=1.2e-09 Score=90.99 Aligned_cols=72 Identities=17% Similarity=0.083 Sum_probs=58.8
Q ss_pred hhhhhccccCCCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCC-----CCC----CCeEEEEecCCc
Q 039995 12 MTRQPRLSKGLGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPK-----KWE----GRKVLFVHTGGL 82 (118)
Q Consensus 12 ~~~~l~~~~g~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~-----~~~----g~rVLfiHTGGl 82 (118)
.+..++++.+..|..+++|..++++.++++|||++||. +|++++++++.+.+.+. +.+ +++||+|||||.
T Consensus 349 ~~~~~~~~~d~~~~Vsd~e~~~a~~~L~~~eGi~~eps-saaalAa~~~l~~~~~~~~~~~l~~~~~~~~~vv~i~TGG~ 427 (442)
T 3ss7_X 349 VGRAMERLLDGFYTLSDQTMYDMLGWLAQEEGIRLEPS-ALAGMAGPQRVCASVSYQQMHGFSAEQLRNTTHLVWATGGG 427 (442)
T ss_dssp HHHHHGGGCCEEEEECHHHHHHHHHHHHHHHCCCCCGG-GGGGGGHHHHHHHCHHHHHHHTCCHHHHHTCEEEEEECBCT
T ss_pred HHHHHHhhCCeEEEECHHHHHHHHHHHHHHCCCeEcHH-HHHHHHHHHHHHhchhhHHhcCCCcccCCCCeEEEEECCCC
Confidence 35667788899999999999999999999999999999 89999999864432111 222 789999999996
Q ss_pred cc
Q 039995 83 LG 84 (118)
Q Consensus 83 ~g 84 (118)
.-
T Consensus 428 ~~ 429 (442)
T 3ss7_X 428 MV 429 (442)
T ss_dssp TC
T ss_pred CC
Confidence 43
No 15
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=98.75 E-value=6.5e-09 Score=83.33 Aligned_cols=68 Identities=16% Similarity=0.199 Sum_probs=57.3
Q ss_pred hhhhhccccCCCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCCc
Q 039995 12 MTRQPRLSKGLGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGL 82 (118)
Q Consensus 12 ~~~~l~~~~g~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGGl 82 (118)
++....++.+.+|..+++|..++++.+++++||++||. ||++++++++ +.+.+ +.++++||+|||||-
T Consensus 237 ~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~egi~~eps-sgaa~aa~~~-~~~~~-~~~g~~Vv~v~t~~g 304 (334)
T 3tbh_A 237 PDVLDRSLIDEVLCVAGDDAIETALKLTRSDGVFCGFS-GGANVYAALK-IAERP-EMEGKTIVTVIPSFG 304 (334)
T ss_dssp CTTCCGGGCSEEEEECHHHHHHHHHHHHHHHCCCBCHH-HHHHHHHHHH-HHHSG-GGTTCEEEEEECBBG
T ss_pred CHHHHHHhCCEEEEECHHHHHHHHHHHHHHcCeEEcHH-HHHHHHHHHH-HHHhc-cCCcCeEEEEECCCC
Confidence 33344567889999999999999999999999999999 9999999986 44433 457899999999874
No 16
>4h27_A L-serine dehydratase/L-threonine deaminase; PLP dependent typeii, PLP binding, liver, lyase; HET: LLP; 1.30A {Homo sapiens} PDB: 1p5j_A* 1pwh_A* 1pwe_A*
Probab=98.73 E-value=1.1e-08 Score=82.89 Aligned_cols=65 Identities=12% Similarity=0.194 Sum_probs=53.6
Q ss_pred hhhhccccCCCcccCCHHHHHHHHHHHHHhCCccch--------hhhHHHHHHHHHHHHhCCCCCC-CCeEEEEecCCc
Q 039995 13 TRQPRLSKGLGYAINTSEELNFVKDIAAATGVVLDP--------VYSGKAAYGMLNDMAQNPKKWE-GRKVLFVHTGGL 82 (118)
Q Consensus 13 ~~~l~~~~g~GYG~~t~e~~~~I~~~a~~eGI~LDP--------VYTgKa~~gL~~~l~~~g~~~~-g~rVLfiHTGGl 82 (118)
+..+.++.+.++..+++|..++|+.++++|||++|| +||+| +. .+.+.|.+++ +++|++|||||.
T Consensus 269 ~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~eps~aaalaa~~~~k----~~-~l~~~g~~~~~~~~Vv~v~tGG~ 342 (364)
T 4h27_A 269 LKLFQEHPIFSEVISDQEAVAAIEKFVDDEKILVEPACGAALAAVYSHV----IQ-KLQLEGNLRTPLPSLVVIVCGGS 342 (364)
T ss_dssp HHHHTTSCEEEEEECHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTTH----HH-HHHHTTSSCSSCCEEEEEECBCS
T ss_pred HHHHHhcCCEEEEECHHHHHHHHHHHHHHCCCeEcccHHHHHHHHHhhh----hH-HhhhccCcCCCCCeEEEEECCCC
Confidence 455566667778899999999999999999999999 99998 33 3455577764 689999999996
No 17
>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 2eco_A* 2ecq_A* 2efy_A*
Probab=98.72 E-value=1.1e-08 Score=80.28 Aligned_cols=64 Identities=14% Similarity=0.150 Sum_probs=54.8
Q ss_pred hccccCCCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCCcc
Q 039995 16 PRLSKGLGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGLL 83 (118)
Q Consensus 16 l~~~~g~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGGl~ 83 (118)
..++...+|..+++|..++++++++++||++||. ||++++++++...+ +.++++||+|||||..
T Consensus 230 ~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~~eps-sa~a~aa~~~~~~~---~~~~~~vv~i~tg~g~ 293 (304)
T 1ve1_A 230 DLSLLDGVIQVWEEDAFPLARRLAREEGLFLGMS-SGGIVWAALQVARE---LGPGKRVACISPDGGW 293 (304)
T ss_dssp CGGGCSEEEEECHHHHHHHHHHHHHHHCCCBCHH-HHHHHHHHHHHHHH---HCTTCEEEEEECBBSG
T ss_pred hhhhCCEEEEECHHHHHHHHHHHHHHhCcEEcHH-HHHHHHHHHHHHHh---cCCCCeEEEEECCCCc
Confidence 3456778999999999999999999999999999 99999999874443 3357899999999863
No 18
>1p5j_A L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo sapiens} SCOP: c.79.1.1 PDB: 1pwh_A* 1pwe_A*
Probab=98.70 E-value=1.5e-08 Score=82.53 Aligned_cols=70 Identities=10% Similarity=0.175 Sum_probs=58.4
Q ss_pred hhhhhccccCCCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHH----HHHhCCC-CCCCCeEEEEecCCc
Q 039995 12 MTRQPRLSKGLGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLN----DMAQNPK-KWEGRKVLFVHTGGL 82 (118)
Q Consensus 12 ~~~~l~~~~g~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~----~l~~~g~-~~~g~rVLfiHTGGl 82 (118)
.+..+.++.+.+|..+++|..++++.+++++||++||. +|.+++++++ .+++.|. +.++++||+|||||.
T Consensus 268 ~~~~~~~~~~~~~~Vsd~e~~~a~~~l~~~eGi~~eps-sa~alaa~~~~~~~~l~~~g~~~~~~~~Vv~i~tgg~ 342 (372)
T 1p5j_A 268 ALKLFQEHPIFSEVISDQEAVAAIEKFVDDEKILVEPA-CGAALAAVYSHVIQKLQLEGNLRTPLPSLVVIVCGGS 342 (372)
T ss_dssp HHHHHHHSCEEEEEECHHHHHHHHHHHHHHTCCCCCHH-HHHHHHHHHTTHHHHHHHTTSSCSSCSCEEEECCBCS
T ss_pred HHHHHhhcCCEEEEECHHHHHHHHHHHHHHcCCeechh-HHHHHHHHHHhhHHHHhhccccCCCCCeEEEEECCCC
Confidence 34556667788999999999999999999999999999 9999999873 2444454 557899999999995
No 19
>1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, J protein structure initiative, joint center for structural G transferase; 1.80A {Thermotoga maritima} SCOP: c.79.1.1 PDB: 3fca_A*
Probab=98.69 E-value=1.9e-08 Score=79.10 Aligned_cols=63 Identities=17% Similarity=0.164 Sum_probs=54.4
Q ss_pred ccccCCCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCCcc
Q 039995 17 RLSKGLGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGLL 83 (118)
Q Consensus 17 ~~~~g~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGGl~ 83 (118)
.++...+|..+++|..++++.+++++||++||. ||++++++++ +.+. ++++++||+|||||..
T Consensus 235 ~~~~d~~~~V~d~e~~~a~~~l~~~~gi~~eps-sa~alaa~~~-~~~~--~~~~~~vv~i~tg~g~ 297 (303)
T 1o58_A 235 RSVIDEVITVEDEEAYEMARYLAKKEGLLVGIS-SGANVAAALK-VAQK--LGPDARVVTVAPDHAE 297 (303)
T ss_dssp GGGCCEEEEECHHHHHHHHHHHHHHHCCCBCHH-HHHHHHHHHH-HHHT--SCTTCCEEEEECBBGG
T ss_pred HHhCCeEEEECHHHHHHHHHHHHHHcCceEcHH-HHHHHHHHHH-HHHH--cCCCCEEEEEECCCCc
Confidence 345678899999999999999999999999999 9999999986 4442 4468899999999863
No 20
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus}
Probab=98.68 E-value=1.7e-08 Score=79.24 Aligned_cols=62 Identities=19% Similarity=0.118 Sum_probs=53.2
Q ss_pred ccccCCCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCCc
Q 039995 17 RLSKGLGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGL 82 (118)
Q Consensus 17 ~~~~g~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGGl 82 (118)
.+.....|..+++|..++++.+++++||++|| |||++++++++...+ + .++++||+||||+.
T Consensus 234 ~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~ep-ssa~a~aa~~~~~~~-~--~~~~~vv~i~tg~g 295 (308)
T 2egu_A 234 TSIYDGVITVTTEEAFAAARRAAREEGILGGI-SSGAAIHAALKVAKE-L--GKGKKVLAIIPSNG 295 (308)
T ss_dssp CCSCSEEEEECHHHHHHHHHHHHHHHCCCBCH-HHHHHHHHHHHHHHH-H--CTTCEEEEEECBBG
T ss_pred HHhcCeEEEECHHHHHHHHHHHHHHhCceEcH-HHHHHHHHHHHHHHh-c--CCCCeEEEEECCCC
Confidence 34566789999999999999999999999999 999999999874444 2 35889999999975
No 21
>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis, transferase, ENZ kinetics, enzymatic sythesis of novel compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB: 2bhs_A* 2bht_A* 2jc3_A*
Probab=98.65 E-value=3.9e-08 Score=77.32 Aligned_cols=62 Identities=18% Similarity=0.097 Sum_probs=53.7
Q ss_pred cccCCCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCCccc
Q 039995 18 LSKGLGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGLLG 84 (118)
Q Consensus 18 ~~~g~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGGl~g 84 (118)
++....|..+++|..++++.+++++||++||. ||++++++++...+ + ++++||+|||||..-
T Consensus 224 ~~~d~~~~V~d~e~~~a~~~l~~~~gi~~~ps-sa~alaa~~~~~~~-~---~~~~vv~i~tg~~~k 285 (303)
T 2v03_A 224 SLVDEVLDIHQRDAENTMRELAVREGIFCGVS-SGGAVAGALRVAAA-N---PDAVVVAIICDRGDR 285 (303)
T ss_dssp GGCSEEEEECHHHHHHHHHHHHHHHCCCBCHH-HHHHHHHHHHHHHH-S---TTCEEEEEECBBSGG
T ss_pred HHCCEEEEECHHHHHHHHHHHHHHcCceEcHH-HHHHHHHHHHHHHH-C---CCCeEEEEECCCCcc
Confidence 45667899999999999999999999999999 99999999874443 2 578999999998754
No 22
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A*
Probab=98.63 E-value=2.5e-08 Score=80.01 Aligned_cols=70 Identities=16% Similarity=0.168 Sum_probs=57.4
Q ss_pred hhhhccccCCCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCCcccc
Q 039995 13 TRQPRLSKGLGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGLLGL 85 (118)
Q Consensus 13 ~~~l~~~~g~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGGl~gl 85 (118)
+....++....|..+++|..++++.+++++||++||. ||++++++++ +.+.+ ..++++||+|||||..--
T Consensus 244 ~~~~~~~~d~~~~Vsd~e~~~a~~~l~~~~gi~~eps-sa~alaa~~~-~~~~~-~~~~~~vv~i~tg~g~ky 313 (343)
T 2pqm_A 244 DIYKKEFVDEIIPIKTQDAWKMARAVVKYDGIMCGMS-SGAAILAGLK-EAEKP-ENEGKTIVIIVPSCGERY 313 (343)
T ss_dssp TTCCGGGCCEEEEECHHHHHHHHHHHHHHHCCCBCHH-HHHHHHHHHH-HHTSG-GGTTCEEEEEECBBGGGG
T ss_pred HHHHHHhCCeEEEECHHHHHHHHHHHHHHhCCeEchh-HHHHHHHHHH-HHHhc-CCCCCeEEEEEcCCCccc
Confidence 3334456778899999999999999999999999999 9999999986 44433 336889999999986543
No 23
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*
Probab=98.61 E-value=3.1e-08 Score=78.30 Aligned_cols=68 Identities=16% Similarity=0.187 Sum_probs=56.1
Q ss_pred hhhhhccccCCCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCCc
Q 039995 12 MTRQPRLSKGLGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGL 82 (118)
Q Consensus 12 ~~~~l~~~~g~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGGl 82 (118)
++....++....|..+++|..++++.+++++||++||. ||++++++++ +.+.+. .++++||+|||||-
T Consensus 232 ~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~ps-sga~~aaa~~-~~~~~~-~~~~~vv~i~tg~g 299 (322)
T 1z7w_A 232 PSVLNVDLIDEVVQVSSDESIDMARQLALKEGLLVGIS-SGAAAAAAIK-LAQRPE-NAGKLFVAIFPSFG 299 (322)
T ss_dssp CTTCCGGGCSEEEEECHHHHHHHHHHHHHHHSCCBCHH-HHHHHHHHHH-HHTSGG-GTTCEEEEEECBBG
T ss_pred ChhhhHHhCCEEEEECHHHHHHHHHHHHHHcCceEchh-HHHHHHHHHH-HHHhcC-CCCCeEEEEECCCC
Confidence 34444566788999999999999999999999999999 8999999986 444332 35789999999984
No 24
>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY crystallography, sulfhydrylase; HET: LLP; 1.55A {Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X* 3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A*
Probab=98.61 E-value=3.3e-08 Score=77.87 Aligned_cols=65 Identities=12% Similarity=0.154 Sum_probs=54.2
Q ss_pred ccccCCCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCCccc
Q 039995 17 RLSKGLGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGLLG 84 (118)
Q Consensus 17 ~~~~g~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGGl~g 84 (118)
.++.+..+..+++|..++++.+++++||++||. ||++++++++ +.+.+ ..++++||+|||||..-
T Consensus 240 ~~~~d~~~~V~d~e~~~a~~~l~~~~gi~~eps-sa~~laa~~~-~~~~~-~~~~~~vv~i~tg~g~k 304 (316)
T 1y7l_A 240 LSIIDRVETVDSDTALATARRLMAEEGILAGIS-SGAAVAAADR-LAKLP-EFADKLIVVILPSASER 304 (316)
T ss_dssp GGGCCEEEEECHHHHHHHHHHHHHHHCCCBCHH-HHHHHHHHHH-HHTSG-GGTTCEEEEEECBBCSS
T ss_pred HhhCCEEEEECHHHHHHHHHHHHHhhCCeEcHH-HHHHHHHHHH-HHHhc-CCCCCeEEEEECCCCcc
Confidence 345667788888899999999999999999999 9999999986 44433 33578999999998754
No 25
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} SCOP: c.79.1.0 PDB: 3fgp_A* 3dki_A* 3dwi_A*
Probab=98.58 E-value=1.8e-08 Score=80.39 Aligned_cols=68 Identities=10% Similarity=0.102 Sum_probs=55.8
Q ss_pred hhhhccccCCCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCe--EEEEecCCcc
Q 039995 13 TRQPRLSKGLGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRK--VLFVHTGGLL 83 (118)
Q Consensus 13 ~~~l~~~~g~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~r--VLfiHTGGl~ 83 (118)
+....++...+|..+++|..++++.+++++||++||. ||++++++++...+ + ..++++ ||+|||||-.
T Consensus 231 ~~~~~~~~d~~~~V~d~e~~~a~~~l~~~egi~~eps-sa~a~aa~~~~~~~-~-~~~g~~~~Vv~i~~g~g~ 300 (325)
T 3dwg_A 231 ELYDPEILTARYSVGAVDAVRRTRELVHTEGIFAGIS-TGAVLHAALGVGAG-A-LAAGERADIALVVADAGW 300 (325)
T ss_dssp TTCCGGGCSEEEEEEHHHHHHHHHHHHHHHCCCBCHH-HHHHHHHHHHHHHH-H-HHHTCCEEEEEEECBBGG
T ss_pred ccccHhhCCeEEEECHHHHHHHHHHHHHHcCceechh-HHHHHHHHHHHHHH-h-ccCCCCCeEEEEECCCCc
Confidence 3334567788999999999999999999999999999 99999999874443 2 234677 9999999753
No 26
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A
Probab=98.49 E-value=1.1e-07 Score=74.77 Aligned_cols=63 Identities=19% Similarity=0.286 Sum_probs=51.1
Q ss_pred cccCCCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEE-EEecCCcc
Q 039995 18 LSKGLGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVL-FVHTGGLL 83 (118)
Q Consensus 18 ~~~g~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVL-fiHTGGl~ 83 (118)
+.....|..+++|..++++.+++++||++|| |||++++++++ +.+.+.+ ++++|| ++|+||.-
T Consensus 238 ~~~d~~~~v~d~e~~~a~~~l~~~~gi~~ep-ssa~alaa~~~-~~~~~~~-~~~~vv~v~~~~g~k 301 (313)
T 2q3b_A 238 DLVDEIITVGNEDALNVARRLAREEGLLVGI-SSGAATVAALQ-VARRPEN-AGKLIVVVLPDFGER 301 (313)
T ss_dssp GGCCEEEEECHHHHHHHHHHHHHHHSCCBCH-HHHHHHHHHHH-HHTCGGG-TTCEEEEEECBBSGG
T ss_pred hhccEEEEECHHHHHHHHHHHHHHcCceEch-HHHHHHHHHHH-HHHhcCC-CCCEEEEEECCCCcc
Confidence 3455679999999999999999999999999 99999999986 4443323 577876 78888854
No 27
>2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo sapiens}
Probab=98.47 E-value=1.1e-07 Score=74.80 Aligned_cols=70 Identities=13% Similarity=0.172 Sum_probs=53.7
Q ss_pred hhhhhccccCCCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHH----HHHHhCCC-CCCCCeEEEEecCCc
Q 039995 12 MTRQPRLSKGLGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGML----NDMAQNPK-KWEGRKVLFVHTGGL 82 (118)
Q Consensus 12 ~~~~l~~~~g~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~----~~l~~~g~-~~~g~rVLfiHTGGl 82 (118)
.+..+.++.+.+|..+++|..++++.+++++||++||- +|-++++++ +.+.+.|. +.++++||+|||||.
T Consensus 228 ~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~eps-~a~a~aa~~~~~~~~~~~~g~~~~~~~~vv~i~tgg~ 302 (318)
T 2rkb_A 228 ALECMQVCKIHSEVVEDTEAVSAVQQLLDDERMLVEPA-CGAALAAIYSGLLRRLQAEGCLPPSLTSVVVIVCGGN 302 (318)
T ss_dssp HHHHHHHSCEEEEEECHHHHHHHHHHHHHHHCBCCCHH-HHHHHHHHHTSHHHHHHHTTSSCSSCSCEEEEECBCS
T ss_pred HHHHHHHcCCEEEEECHHHHHHHHHHHHHhcCcEEchh-HHHHHHHHHHhhHHHHhhccccCCCCCeEEEEECCCC
Confidence 34556667788999999999999999999999999994 344444433 23434455 567899999999997
No 28
>1e5x_A Threonine synthase; threonine biosynthesis, PLP enzyme, S-adenosyl-methionine, allostery; 2.25A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 2c2b_A* 2c2g_A*
Probab=98.41 E-value=2.9e-07 Score=77.69 Aligned_cols=67 Identities=16% Similarity=0.195 Sum_probs=55.6
Q ss_pred hccccCCCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCCcccc
Q 039995 16 PRLSKGLGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGLLGL 85 (118)
Q Consensus 16 l~~~~g~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGGl~gl 85 (118)
++++.|..+..+++|..++|+ +++++||++||. ||++++++++ +.+.+.+.++++||++||||..-.
T Consensus 372 ~~~~~g~~~~Vsd~e~~~ai~-l~~~eGi~~ePs-sA~alaa~~~-~~~~g~~~~~~~vV~i~Tg~~~k~ 438 (486)
T 1e5x_A 372 LKKCNGIVEEATEEELMDAMA-QADSTGMFICPH-TGVALTALFK-LRNQGVIAPTDRTVVVSTAHGLKF 438 (486)
T ss_dssp HHHTTCEEEEECHHHHHHHHH-HHHHTTCCCCHH-HHHHHHHHHH-HHHTTSSCTTCCEEEEECBCGGGG
T ss_pred HhccCCeEEEECHHHHHHHHH-HHHHCCeEEChh-HHHHHHHHHH-HHHhcCCCCCCeEEEEeCCCCccC
Confidence 445555578899999999999 678899999999 9999999986 555566777899999999997643
No 29
>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer, regulation, pyridoxal PHOS isoleucine biosynthesis; HET: PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2 d.58.18.2
Probab=98.33 E-value=6.2e-07 Score=76.95 Aligned_cols=69 Identities=16% Similarity=0.146 Sum_probs=58.4
Q ss_pred hhhhccccCCCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCCccc
Q 039995 13 TRQPRLSKGLGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGLLG 84 (118)
Q Consensus 13 ~~~l~~~~g~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGGl~g 84 (118)
+..+.++.+..+..+++|..++|+++++++|+++||. +|++++++++...+ +.+ ++++||+|||||-.-
T Consensus 252 ~~l~~~~vd~~v~Vsd~ei~~ai~~L~~~~givvEPs-gA~alAal~~~~~~-~~~-~g~~VV~I~tGgn~d 320 (514)
T 1tdj_A 252 FRLCQEYLDDIITVDSDAICAAMKDLFEDVRAVAEPS-GALALAGMKKYIAL-HNI-RGERLAHILSGANVN 320 (514)
T ss_dssp HHHHTTSCCEEEEECHHHHHHHHHHHHHHTCCCCCHH-HHHHHHHHHHHHHH-HTC-CSCEEEEECCCCCCC
T ss_pred HHHHHHhCCeEEEECHHHHHHHHHHHHHHcCeEEcHH-HHHHHHHHHHHHHh-cCC-CCCeEEEEEeCCCCC
Confidence 4456678889999999999999999999999999999 99999999874444 233 588999999998643
No 30
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana}
Probab=98.33 E-value=3.8e-07 Score=76.65 Aligned_cols=67 Identities=21% Similarity=0.255 Sum_probs=55.7
Q ss_pred hhhhccccCCCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCCc
Q 039995 13 TRQPRLSKGLGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGL 82 (118)
Q Consensus 13 ~~~l~~~~g~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGGl 82 (118)
+....++..++|..+++|..++++.++++|||++||. +|++++++++ +.+.+.. ++++||+|||++-
T Consensus 341 ~~l~~~~vd~~v~Vsd~ea~~a~r~La~~eGi~veps-sGaa~aAal~-la~~~~~-~g~~VV~Il~d~G 407 (430)
T 4aec_A 341 KNLDQKIMDEVIAISSEEAIETAKQLALKEGLMVGIS-SGAAAAAAIK-VAKRPEN-AGKLIAVVFPSFG 407 (430)
T ss_dssp TTCCTTTCSEEEEECHHHHHHHHHHHHHHHCCCBCHH-HHHHHHHHHH-HTTSGGG-TTCEEEEEECBBG
T ss_pred HHHHHHhCCeEEEECHHHHHHHHHHHHHHCCCEEehH-HHHHHHHHHH-HHHhcCC-CcCeEEEEECCCC
Confidence 3334466788999999999999999999999999999 9999999986 5544433 6899999998764
No 31
>1v8z_A Tryptophan synthase beta chain 1; beta+alpha, riken structural genomics/proteomics initiative, structural genomics, lyase; HET: PLP; 2.21A {Pyrococcus furiosus} SCOP: c.79.1.1 PDB: 1wdw_B*
Probab=98.22 E-value=1.4e-06 Score=70.13 Aligned_cols=65 Identities=12% Similarity=0.225 Sum_probs=54.1
Q ss_pred hhhhccccCCCcccCCHHHHHHHHHHHHHhCCccch-hhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCCc
Q 039995 13 TRQPRLSKGLGYAINTSEELNFVKDIAAATGVVLDP-VYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGL 82 (118)
Q Consensus 13 ~~~l~~~~g~GYG~~t~e~~~~I~~~a~~eGI~LDP-VYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGGl 82 (118)
+...+++.+..|..+++|..++++.++++|||+ | +|||++++++.+ +.+. +.++++||+|+|||-
T Consensus 309 ~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~--~~~~sa~a~a~a~~-l~~~--~~~~~~vv~i~tg~g 374 (388)
T 1v8z_A 309 AYLKKIQRAEYVTVTDEEALKAFHELSRTEGII--PALESAHAVAYAMK-LAKE--MSRDEIIIVNLSGRG 374 (388)
T ss_dssp HHHHHTTSEEEEEEEHHHHHHHHHHHHHHHSCC--BCHHHHHHHHHHHH-HHHT--SCTTCEEEEEECBBS
T ss_pred HHHHhcCCcEEEEECHHHHHHHHHHHHHhcCCe--ecccHHHHHHHHHH-HHHh--cCCCCEEEEEECCCC
Confidence 344456678889999999999999999999999 6 499999999986 4443 456899999999974
No 32
>1wkv_A Cysteine synthase; homodimer, open alpha/beta folding, transferase; HET: PLP; 2.00A {Aeropyrum pernix} SCOP: c.79.1.1
Probab=98.11 E-value=2.5e-06 Score=70.30 Aligned_cols=59 Identities=19% Similarity=0.199 Sum_probs=50.1
Q ss_pred CCCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCCc
Q 039995 21 GLGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGL 82 (118)
Q Consensus 21 g~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGGl 82 (118)
|..|..+++|..++++.++++|||++||. ||++++++++ +.+.+.++++ ++|.++||+-
T Consensus 313 g~~~~Vsd~ea~~a~~~l~~~eGi~~~ps-sa~alaa~~~-l~~~g~~~~~-~vVviltg~G 371 (389)
T 1wkv_A 313 YTLAEVTLEEAMEAVVEVARSDGLVIGPS-GGAAVKALAK-KAAEGDLEPG-DYVVVVPDTG 371 (389)
T ss_dssp CEEEEECHHHHHHHHHHHHHHHSCCBCHH-HHHHHHHHHH-HHHTTCSCSE-EEEEEECBBG
T ss_pred cEEEEECHHHHHHHHHHHHHHcCCeEChH-HHHHHHHHHH-HHHhcCCCCC-CEEEEEcCCC
Confidence 46799999999999999999999999999 9999999986 5555566554 4778999864
No 33
>2o2e_A Tryptophan synthase beta chain; amino-acid biosynthesis, tryptophan biosynthesis, structural genomics; 2.20A {Mycobacterium tuberculosis} PDB: 2o2j_A
Probab=98.09 E-value=3.1e-06 Score=70.06 Aligned_cols=63 Identities=16% Similarity=0.112 Sum_probs=51.0
Q ss_pred hccccCCCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCCc
Q 039995 16 PRLSKGLGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGL 82 (118)
Q Consensus 16 l~~~~g~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGGl 82 (118)
.+.+.+..|..+++|..++++.++++|||++ +++||++++++++...+ +.++++||+++||+-
T Consensus 343 ~~~~~~~~~~Vsd~e~~~a~~~l~~~eGi~~-~~esa~A~a~a~~l~~~---~~~~~~vvvilsG~g 405 (422)
T 2o2e_A 343 KEAGRVDYRPITDSEAMDAFGLLCRMEGIIP-AIESAHAVAGALKLGVE---LGRGAVIVVNLSGRG 405 (422)
T ss_dssp ----CCEEEEECHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHH---HCTTCEEEEECCSCS
T ss_pred HHhCCeeEEEECHHHHHHHHHHHHHHcCCcc-CchHHHHHHHHHHHHHh---cCCCCEEEEEeCCCC
Confidence 3345677899999999999999999999998 89999999999864332 346889999999964
No 34
>1jbq_A B, cystathionine beta-synthase, serine sulfhydrase; fold type II of PLP enzymes, lyase; HET: HEM PLP; 2.60A {Homo sapiens} SCOP: c.79.1.1 PDB: 1m54_A*
Probab=98.08 E-value=4.3e-06 Score=70.01 Aligned_cols=60 Identities=17% Similarity=0.240 Sum_probs=51.3
Q ss_pred cCCCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCCcc
Q 039995 20 KGLGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGLL 83 (118)
Q Consensus 20 ~g~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGGl~ 83 (118)
....|..+++|..++++.+++++||++| .|||++++++++ +.+. +.++++||+|+||+..
T Consensus 342 vd~~~~Vsd~ea~~a~r~La~~eGilve-~ssgaalaaa~~-~~~~--~~~g~~VV~iltd~g~ 401 (435)
T 1jbq_A 342 VDKWFKSNDEEAFTFARMLIAQEGLLCG-GSAGSTVAVAVK-AAQE--LQEGQRCVVILPDSVR 401 (435)
T ss_dssp CCEEEEECHHHHHHHHHHHHHHSCCCBC-HHHHHHHHHHHH-HGGG--CCTTCEEEEEECBBGG
T ss_pred ccceEEeCHHHHHHHHHHHHHHcCCEEc-HHHHHHHHHHHH-HHHH--cCCCCeEEEEEcCCcc
Confidence 3456899999999999999999999999 899999999986 4432 5568999999999864
No 35
>1x1q_A Tryptophan synthase beta chain; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.50A {Thermus thermophilus}
Probab=98.02 E-value=5.6e-06 Score=68.16 Aligned_cols=62 Identities=15% Similarity=0.076 Sum_probs=52.7
Q ss_pred hccccCCCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCC
Q 039995 16 PRLSKGLGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGG 81 (118)
Q Consensus 16 l~~~~g~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGG 81 (118)
.+......|..+++|..++++.++++|||++ ++++|++++++.+ +.+ .+.++++||+|+|||
T Consensus 341 ~~~~~~~~~~Vsd~e~~~a~~~l~~~egi~~-~~~sa~a~a~a~~-~~~--~~~~~~~Vv~vlsG~ 402 (418)
T 1x1q_A 341 ADAGVAEYASVTDEEALEGFKLLARLEGIIP-ALESAHAIAYAAK-VVP--EMDKDQVVVINLSGR 402 (418)
T ss_dssp HHHTSEEEEEECHHHHHHHHHHHHHHHSCCB-CHHHHHHHHHHHH-HTT--TSCTTCEEEEEECBB
T ss_pred HhccCeEEEEECHHHHHHHHHHHHHhcCCcc-cchHHHHHHHHHH-HHH--hcCCCCeEEEEECCC
Confidence 3445567899999999999999999999999 8999999999975 443 245689999999995
No 36
>1qop_B Tryptophan synthase beta chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.79.1.1 PDB: 1k7e_B* 1k7f_B* 1kfb_B* 1k3u_B* 1tjp_B* 1wbj_B* 2cli_B* 2clk_B* 2cll_B* 2j9x_B* 3cep_B* 1kfc_B* 1k8x_B* 1kfj_B* 1kfk_B* 2rh9_B* 2rhg_B* 2j9y_B* 1cw2_B* 1a5s_B* ...
Probab=97.96 E-value=9.5e-06 Score=65.93 Aligned_cols=63 Identities=17% Similarity=0.200 Sum_probs=52.1
Q ss_pred hhccccCCCcccCCHHHHHHHHHHHHHhCCccch-hhhHHHHHHHHHHHHhCCCCC-CCCeEEEEecCCc
Q 039995 15 QPRLSKGLGYAINTSEELNFVKDIAAATGVVLDP-VYSGKAAYGMLNDMAQNPKKW-EGRKVLFVHTGGL 82 (118)
Q Consensus 15 ~l~~~~g~GYG~~t~e~~~~I~~~a~~eGI~LDP-VYTgKa~~gL~~~l~~~g~~~-~g~rVLfiHTGGl 82 (118)
..+.+.+..|..+++|..++++.++++|||+ | ++||++++++.+...+ ++ ++++||+|+|||-
T Consensus 315 l~~~~~~~~~~V~d~e~~~a~~~l~~~egi~--~~~~sa~a~a~a~~l~~~---~~~~~~~vv~i~tg~g 379 (396)
T 1qop_B 315 LNSIGRADYVSITDDEALEAFKTLCRHEGII--PALESSHALAHALKMMRE---QPEKEQLLVVNLSGRG 379 (396)
T ss_dssp HHHTTSSEEEEEEHHHHHHHHHHHHHHHSCC--BCHHHHHHHHHHHHHHHH---STTSCEEEEEEECBBC
T ss_pred HHhcCCeEEEEECHHHHHHHHHHHHHhcCCc--cccchHHHHHHHHHHHHh---cCCCCCeEEEEECCCC
Confidence 3345668889999999999999999999999 6 4999999999863333 44 6889999999974
No 37
>1vb3_A Threonine synthase; PLP-dependent enzyme, lyase; HET: KPA; 2.20A {Escherichia coli} SCOP: c.79.1.1
Probab=97.75 E-value=1.9e-05 Score=65.40 Aligned_cols=55 Identities=15% Similarity=0.138 Sum_probs=48.1
Q ss_pred cCCCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCCc
Q 039995 20 KGLGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGL 82 (118)
Q Consensus 20 ~g~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGGl 82 (118)
.+..+..+++|..++|+.+ +++||++||. ||.+++++++ +.+ ++++||+++||+-
T Consensus 325 ~~~~~~Vsd~e~~~a~~~l-~~eGi~~~p~-sa~a~aa~~~-~~~-----~~~~vV~i~tg~~ 379 (428)
T 1vb3_A 325 ELGYAAVDDETTQQTMREL-KELGYTSEPH-AAVAYRALRD-QLN-----PGEYGLFLGTAHP 379 (428)
T ss_dssp GSEEEECCHHHHHHHHHHH-HHTTCCCCHH-HHHHHHHHHT-TCC-----TTCEEEEEECBCG
T ss_pred CcEEEEECHHHHHHHHHHH-HHCCeEECch-HHHHHHHHHH-HhC-----CCCcEEEEeCCCC
Confidence 5678899999999999999 9999999999 9999999874 332 4789999999983
No 38
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*
Probab=97.68 E-value=3.6e-05 Score=64.68 Aligned_cols=62 Identities=19% Similarity=0.258 Sum_probs=53.1
Q ss_pred cccCCCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCCcc
Q 039995 18 LSKGLGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGLL 83 (118)
Q Consensus 18 ~~~g~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGGl~ 83 (118)
++....|..+++|..++++.++++|||++||. +|++++++++ +.+ .+.++++|++|++++..
T Consensus 292 ~~~d~~~~V~d~e~~~a~r~l~~~eGi~~~ps-sa~alaaal~-~~~--~~~~~~~vv~i~~d~g~ 353 (527)
T 3pc3_A 292 TVVDVWTKIGDSDCFPMSRRLNAEEGLLCGGS-SGGAMHAALE-HAR--KLKKGQRCVVILPDGIR 353 (527)
T ss_dssp GGCCEEEEECGGGTHHHHHHHHHHHCCCBCHH-HHHHHHHHHH-HHT--TCCTTCEEEEEECBBGG
T ss_pred hhCcEEEEECHHHHHHHHHHHHHHcCceEcHH-HHHHHHHHHH-HHH--HcCCCCeEEEEEcCcch
Confidence 45667899999999999999999999999999 9999999986 443 35578999999998644
No 39
>1kl7_A Threonine synthase; threonine synthesis, pyridoxal 5-phosphate, beta-family, MON lyase; HET: PLP; 2.70A {Saccharomyces cerevisiae} SCOP: c.79.1.1
Probab=94.20 E-value=0.059 Score=46.00 Aligned_cols=57 Identities=14% Similarity=0.140 Sum_probs=46.2
Q ss_pred CcccCCHHHHHHHHHHHHHh----CCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCCc
Q 039995 23 GYAINTSEELNFVKDIAAAT----GVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGL 82 (118)
Q Consensus 23 GYG~~t~e~~~~I~~~a~~e----GI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGGl 82 (118)
.+..+++|..++|+++++++ |+++||- ||=+++++.+...+ + +.++.+||.+-||.-
T Consensus 392 ~~~Vsd~e~~~ai~~l~~~~~~~~G~~~ep~-tAv~~aa~~~~~~~-g-~~~~~~vV~l~Ta~~ 452 (514)
T 1kl7_A 392 SERVSNEETSETIKKIYESSVNPKHYILDPH-TAVGVCATERLIAK-D-NDKSIQYISLSTAHP 452 (514)
T ss_dssp EEECCHHHHHHHHHHHHHHCCSSTTCCCCHH-HHHHHHHHHHHHHH-H-CCTTSEEEEEECBCG
T ss_pred EEEECHHHHHHHHHHHHHhCCCCCCEEEccc-HHHHHHHHHHHHHh-c-cCCCCcEEEEECCch
Confidence 45677889999999999999 9999998 78899998864433 3 446788999988864
No 40
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=91.63 E-value=0.3 Score=38.91 Aligned_cols=55 Identities=22% Similarity=0.395 Sum_probs=41.4
Q ss_pred cccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCC
Q 039995 24 YAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGG 81 (118)
Q Consensus 24 YG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGG 81 (118)
+-.+++|.+++++.++++|||++.|- +|-++++.++ +.+.. ..+|++||.|-+++
T Consensus 264 v~v~d~eai~a~~~L~~~eGi~v~~s-sga~~~aAl~-~a~~~-~~~g~~VV~il~d~ 318 (344)
T 3vc3_A 264 LEVSSEDAVNMARVLALKEGLMVGIS-SGANTVAALR-LAQLP-ENKGKLIVTVHPSF 318 (344)
T ss_dssp EEECHHHHHHHHHHHHHHHCCCBCHH-HHHHHHHHHH-HHTSG-GGTTCEEEEEECBB
T ss_pred EEECHHHHHHHHHHHHHHCCCEEehh-HHHHHHHHHH-Hhccc-cCCCCEEEEEECCC
Confidence 34567889999999999999999986 4667777664 44432 34689999998764
No 41
>3v7n_A Threonine synthase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, lyase; 1.40A {Burkholderia thailandensis}
Probab=86.30 E-value=0.81 Score=38.93 Aligned_cols=53 Identities=8% Similarity=0.127 Sum_probs=41.6
Q ss_pred CCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCC
Q 039995 22 LGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGG 81 (118)
Q Consensus 22 ~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGG 81 (118)
.+...+++|..+.|+++++++|+++|| -||=+++++.+ +.+ ++.++|++-||-
T Consensus 383 ~~~~VsDee~~~air~l~~~~G~l~dP-htAva~aaa~~-~~~-----~~~~~V~l~Ta~ 435 (487)
T 3v7n_A 383 VSGRSTHADRIATIRDVFERYRTMIDT-HTADGLKVARE-HLR-----PGVPMVVLETAQ 435 (487)
T ss_dssp EEECCCHHHHHHHHHHHHHHSCCCCCH-HHHHHHHHHTT-SCC-----TTSCEEEEECBC
T ss_pred eEEEECHHHHHHHHHHHHHHcCEEECh-hHHHHHHHHHH-hhC-----CCCcEEEEecCC
Confidence 345677889999999999999999999 56778888753 322 367889998885
No 42
>4f4f_A Threonine synthase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.90A {Brucella melitensis BV}
Probab=84.13 E-value=1.6 Score=36.72 Aligned_cols=53 Identities=15% Similarity=0.125 Sum_probs=42.7
Q ss_pred CcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCCc
Q 039995 23 GYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGL 82 (118)
Q Consensus 23 GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGGl 82 (118)
..-.+++|..++|+++.+++|+++||- ||=+++++.+ +.+ ++.++|++=||.-
T Consensus 365 ~~~VsD~ei~~ai~~l~~~~g~~vEP~-~Ava~aa~~~-~~~-----~~~~~V~l~Ta~~ 417 (468)
T 4f4f_A 365 AGRSTVDETAATIESVLSKDGYLLDPH-SAIGVKVARE-KAS-----GTAPMVVLATAHP 417 (468)
T ss_dssp EEECCHHHHHHHHHHHHHHHSCCCCHH-HHHHHHHHHH-HCC-----SSSCEEEEECBCG
T ss_pred EEEECHHHHHHHHHHHHHHCCEEECHh-HHHHHHHHHH-HhC-----CCCeEEEEecCCc
Confidence 456788899999999999999999995 5778888765 432 4678999988864
No 43
>3dmp_A Uracil phosphoribosyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.60A {Burkholderia pseudomallei} SCOP: c.61.1.1
Probab=72.95 E-value=2.5 Score=32.23 Aligned_cols=56 Identities=14% Similarity=0.270 Sum_probs=38.5
Q ss_pred HHhCCccch-hhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCCcccccccHHHhhHhhccccccc
Q 039995 40 AATGVVLDP-VYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGLLGLFDKVDQMAPLLKNWSRMD 103 (118)
Q Consensus 40 ~~eGI~LDP-VYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGGl~glf~~~~~~~~~~~~~~~~~ 103 (118)
.+.=|++|| ++||.++.+.++.+.+.|. +.++|.++- +.+..+.++.+.+.++..+
T Consensus 129 ~~~VilvD~~laTG~T~~~ai~~L~~~G~--pe~~I~~~~------~vaa~egl~~l~~~~P~v~ 185 (217)
T 3dmp_A 129 DRIFILCDPMVATGYSAAHAIDVLKRRGV--PGERLMFLA------LVAAPEGVQVFQDAHPDVK 185 (217)
T ss_dssp TCEEEEECSEESSSHHHHHHHHHHHTTTC--CGGGEEEEC------SEECHHHHHHHHHHCTTCE
T ss_pred CCEEEEEcCcccccHHHHHHHHHHHHcCC--CcCeEEEEE------EEeCHHHHHHHHHHCCCCE
Confidence 356689999 8899999999987877652 236787774 3344555666666666533
No 44
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=67.88 E-value=4.7 Score=27.94 Aligned_cols=62 Identities=6% Similarity=-0.037 Sum_probs=40.8
Q ss_pred hccccCCCcccCCHHHHHHHHHHHHH-hCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEE
Q 039995 16 PRLSKGLGYAINTSEELNFVKDIAAA-TGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFV 77 (118)
Q Consensus 16 l~~~~g~GYG~~t~e~~~~I~~~a~~-eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfi 77 (118)
+.....-||-.+++.-.+++..+.+. ..+...|+=+||++..++-.+..-..-..+.++|++
T Consensus 15 ~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil 77 (206)
T 1vec_A 15 LMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVI 77 (206)
T ss_dssp HHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEE
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEE
Confidence 33334568889999999999887654 447779999999988776433321111234456555
No 45
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=66.04 E-value=12 Score=27.01 Aligned_cols=56 Identities=11% Similarity=0.101 Sum_probs=38.3
Q ss_pred CCcccCCHHHHHHHHHHHHH-hCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEE
Q 039995 22 LGYAINTSEELNFVKDIAAA-TGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFV 77 (118)
Q Consensus 22 ~GYG~~t~e~~~~I~~~a~~-eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfi 77 (118)
-||..+++--.+++..+.+. ..+..-|+=|||++..++-.+..-..-..+.++|++
T Consensus 48 ~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil 104 (237)
T 3bor_A 48 YGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVL 104 (237)
T ss_dssp HTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEE
T ss_pred CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEE
Confidence 47888999999998877653 567889999999988776433321111134566666
No 46
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=63.42 E-value=11 Score=26.38 Aligned_cols=57 Identities=11% Similarity=0.129 Sum_probs=38.0
Q ss_pred CCCcccCCHHHHHHHHHHHH-HhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEE
Q 039995 21 GLGYAINTSEELNFVKDIAA-ATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFV 77 (118)
Q Consensus 21 g~GYG~~t~e~~~~I~~~a~-~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfi 77 (118)
.-||-.+++.-.+++..+.+ ...+...|+=+||++..++..+..-.....+.++|++
T Consensus 31 ~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil 88 (224)
T 1qde_A 31 GYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALML 88 (224)
T ss_dssp HHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEE
T ss_pred HCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEE
Confidence 34788899999999887665 3567889999999988655433221111234466655
No 47
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=62.69 E-value=8.9 Score=28.69 Aligned_cols=57 Identities=7% Similarity=0.004 Sum_probs=39.5
Q ss_pred CCCcccCCHHHHHHHHHHHH---HhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEE
Q 039995 21 GLGYAINTSEELNFVKDIAA---ATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFV 77 (118)
Q Consensus 21 g~GYG~~t~e~~~~I~~~a~---~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfi 77 (118)
.-||-.+++.-.+++..+.+ ...|...|+=+||++..++-.+..-..-..+.++|++
T Consensus 22 ~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil 81 (395)
T 3pey_A 22 AMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICL 81 (395)
T ss_dssp HTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEE
T ss_pred HCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEE
Confidence 35788999999999998876 4557889999999998766433221111134566666
No 48
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=61.51 E-value=17 Score=27.24 Aligned_cols=57 Identities=11% Similarity=0.129 Sum_probs=38.3
Q ss_pred CCCcccCCHHHHHHHHHHHH-HhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEE
Q 039995 21 GLGYAINTSEELNFVKDIAA-ATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFV 77 (118)
Q Consensus 21 g~GYG~~t~e~~~~I~~~a~-~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfi 77 (118)
.-||..+++.-.+++..+.+ ...+...|+=+||++..++-.+..-.....+.++|++
T Consensus 38 ~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil 95 (394)
T 1fuu_A 38 GYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALML 95 (394)
T ss_dssp HHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEE
T ss_pred HcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEE
Confidence 34788899999999888766 4567889999999988765423221111234566665
No 49
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=60.38 E-value=9.4 Score=26.94 Aligned_cols=58 Identities=14% Similarity=0.048 Sum_probs=39.3
Q ss_pred cCCCcccCCHHHHHHHHHHHH-HhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEE
Q 039995 20 KGLGYAINTSEELNFVKDIAA-ATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFV 77 (118)
Q Consensus 20 ~g~GYG~~t~e~~~~I~~~a~-~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfi 77 (118)
..-||-.+++--.+++..+.+ ...+...|+=+||++..++-.+..-..-..+.++|++
T Consensus 20 ~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil 78 (219)
T 1q0u_A 20 KTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVIT 78 (219)
T ss_dssp HHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEE
T ss_pred HHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEE
Confidence 346788899999999988766 4556789999999998776433321111134566665
No 50
>1qtw_A Endonuclease IV; DNA repair enzyme, TIM barrel, trinuclear Zn cluster, hydrolase; 1.02A {Escherichia coli} SCOP: c.1.15.1 PDB: 1qum_A* 2nqh_A 2nqj_A* 2nq9_A*
Probab=60.03 E-value=19 Score=26.02 Aligned_cols=72 Identities=15% Similarity=0.144 Sum_probs=38.8
Q ss_pred CCHHHHHHHHHHHHHhCCcc----------------chhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCCcccccccHH
Q 039995 27 NTSEELNFVKDIAAATGVVL----------------DPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGLLGLFDKVD 90 (118)
Q Consensus 27 ~t~e~~~~I~~~a~~eGI~L----------------DPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGGl~glf~~~~ 90 (118)
.+++..+.++...+..||.+ ||---.+++..+.+.+.....+ |.+.+.+|+|...+-....+
T Consensus 44 ~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~l~~~~~~~r~~~~~~~~~~i~~A~~l--Ga~~v~~~~g~~~~~~~~~~ 121 (285)
T 1qtw_A 44 LTTQTIDEFKAACEKYHYTSAQILPHDSYLINLGHPVTEALEKSRDAFIDEMQRCEQL--GLSLLNFHPGSHLMQISEED 121 (285)
T ss_dssp CCHHHHHHHHHHHHHTTCCGGGBCCBCCTTCCTTCSSHHHHHHHHHHHHHHHHHHHHT--TCCEEEECCCBCTTTSCHHH
T ss_pred CCHHHHHHHHHHHHHcCCCceeEEecCCcccccCCCCHHHHHHHHHHHHHHHHHHHHc--CCCEEEECcCCCCCCCCHHH
Confidence 46688888999999999862 1111123333333322222123 56788899997654333333
Q ss_pred HhhHhhcccc
Q 039995 91 QMAPLLKNWS 100 (118)
Q Consensus 91 ~~~~~~~~~~ 100 (118)
.++.+.++++
T Consensus 122 ~~~~~~~~l~ 131 (285)
T 1qtw_A 122 CLARIAESIN 131 (285)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 51
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=58.62 E-value=11 Score=28.42 Aligned_cols=58 Identities=16% Similarity=0.080 Sum_probs=39.9
Q ss_pred cCCCcccCCHHHHHHHHHHHH---HhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEE
Q 039995 20 KGLGYAINTSEELNFVKDIAA---ATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFV 77 (118)
Q Consensus 20 ~g~GYG~~t~e~~~~I~~~a~---~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfi 77 (118)
..-||-.+++.-.+++..+.+ ...|...|+=+||++..++-.+..-.....+.++|++
T Consensus 41 ~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil 101 (412)
T 3fht_A 41 YAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCL 101 (412)
T ss_dssp HHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEE
T ss_pred HHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEE
Confidence 346899999999999998876 4557789999999998765433221111233466665
No 52
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=57.86 E-value=15 Score=25.71 Aligned_cols=42 Identities=12% Similarity=0.090 Sum_probs=33.3
Q ss_pred CCCcccCCHHHHHHHHHHHH-HhCCccchhhhHHHHHHHHHHH
Q 039995 21 GLGYAINTSEELNFVKDIAA-ATGVVLDPVYSGKAAYGMLNDM 62 (118)
Q Consensus 21 g~GYG~~t~e~~~~I~~~a~-~eGI~LDPVYTgKa~~gL~~~l 62 (118)
.-||-.+++.-.+++..+.+ ...+...|+=+||++..++-.+
T Consensus 31 ~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~ 73 (220)
T 1t6n_A 31 DCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL 73 (220)
T ss_dssp HTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHH
T ss_pred HCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHH
Confidence 35788899999999887665 4567789999999998877533
No 53
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=52.85 E-value=19 Score=27.01 Aligned_cols=56 Identities=14% Similarity=0.059 Sum_probs=38.0
Q ss_pred CCcccCCHHHHHHHHHHHH-HhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEE
Q 039995 22 LGYAINTSEELNFVKDIAA-ATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFV 77 (118)
Q Consensus 22 ~GYG~~t~e~~~~I~~~a~-~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfi 77 (118)
-||-.+++.-.+++..+.+ ...++..|+=+||++..++-.+..-.....+.++|++
T Consensus 26 ~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil 82 (391)
T 1xti_A 26 CGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVM 82 (391)
T ss_dssp HSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEE
T ss_pred CCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEE
Confidence 4788899999999987765 3457779999999998876533321111224456655
No 54
>1o22_A Orphan protein TM0875; structural genomics, joint center for struct genomics, JCSG, protein structure initiative, PSI, unknown; 2.00A {Thermotoga maritima} SCOP: d.238.1.1
Probab=52.53 E-value=11 Score=27.63 Aligned_cols=27 Identities=33% Similarity=0.318 Sum_probs=23.7
Q ss_pred ccCCHHHHHHHHHHHHHhCCccchhhh
Q 039995 25 AINTSEELNFVKDIAAATGVVLDPVYS 51 (118)
Q Consensus 25 G~~t~e~~~~I~~~a~~eGI~LDPVYT 51 (118)
|+-+..+.+-|+++-+++||.||||-+
T Consensus 27 ~k~~~~le~k~~ei~~etgisl~~vns 53 (170)
T 1o22_A 27 GKEFGILEKKMKEIFNETGVSLEPVNS 53 (170)
T ss_dssp TCCCHHHHHHHHHHHHHHSCCCCCCCC
T ss_pred CcchhHHHHHHHHHHHhcCceeeecch
Confidence 456677889999999999999999976
No 55
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=51.91 E-value=14 Score=27.99 Aligned_cols=58 Identities=10% Similarity=0.041 Sum_probs=39.2
Q ss_pred cCCCcccCCHHHHHHHHHHHHH-hCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEE
Q 039995 20 KGLGYAINTSEELNFVKDIAAA-TGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFV 77 (118)
Q Consensus 20 ~g~GYG~~t~e~~~~I~~~a~~-eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfi 77 (118)
...||-.+++.-.+++..+.+. ..+...|+=+||++..++-.+..-.....+.++|++
T Consensus 37 ~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil 95 (400)
T 1s2m_A 37 FEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIM 95 (400)
T ss_dssp HHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEE
T ss_pred HHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEE
Confidence 3468999999999999987664 457789999999988776433321111124456555
No 56
>3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A
Probab=47.96 E-value=20 Score=26.00 Aligned_cols=71 Identities=18% Similarity=0.289 Sum_probs=47.5
Q ss_pred ccCCHHHHHHHHHHHHHhCCcc-chhhhHH---HHHHHHHHHHhCCCCCCCCeEEEEecCCcccccccHHH-hhHhhc
Q 039995 25 AINTSEELNFVKDIAAATGVVL-DPVYSGK---AAYGMLNDMAQNPKKWEGRKVLFVHTGGLLGLFDKVDQ-MAPLLK 97 (118)
Q Consensus 25 G~~t~e~~~~I~~~a~~eGI~L-DPVYTgK---a~~gL~~~l~~~g~~~~g~rVLfiHTGGl~glf~~~~~-~~~~~~ 97 (118)
+.++++..+.+.++.+..+|++ =|+|.+- .|-.+++.+.. +. ..|++++++-|||..+-....+. +++.+.
T Consensus 70 ~~~~~~~~~~~~~i~~AD~ivi~sP~Y~~~~~~~lK~~iD~~~~-~~-l~gK~~~~v~t~G~~~~~~~~~~~L~~il~ 145 (191)
T 3k1y_A 70 RVHTTKLEEITSALSASDGLVVATPVFKASYTGLFKMFFDILDT-DA-LTGMPTIIAATAGSARHSLVLDYALRPLLS 145 (191)
T ss_dssp SCCCHHHHHHHHHHHHCSEEEEEEECBTTBSCHHHHHHHHHSCT-TT-TTTCEEEEEEEESSSTTTTHHHHTHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCEEEEEcCccCCcCcHHHHHHHHHhhh-hh-cCCCEEEEEEeCCCcchhhHHHHHHHHHHH
Confidence 4467899999999999999876 5999753 34444443322 23 36899999999987765432222 555554
No 57
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=47.66 E-value=26 Score=24.92 Aligned_cols=41 Identities=12% Similarity=0.037 Sum_probs=31.6
Q ss_pred cCCCcccCCHHHHHHHHHHHHH-hCCccchhhhHHHHHHHHH
Q 039995 20 KGLGYAINTSEELNFVKDIAAA-TGVVLDPVYSGKAAYGMLN 60 (118)
Q Consensus 20 ~g~GYG~~t~e~~~~I~~~a~~-eGI~LDPVYTgKa~~gL~~ 60 (118)
..-||-.+++.-.+++..+.+. ..|...|+=+||++..++-
T Consensus 40 ~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~ 81 (230)
T 2oxc_A 40 RAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTI 81 (230)
T ss_dssp HHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHH
T ss_pred HHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHH
Confidence 3468888999999998876553 3477899999999886553
No 58
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=46.90 E-value=24 Score=26.83 Aligned_cols=55 Identities=15% Similarity=0.156 Sum_probs=38.1
Q ss_pred CCcccCCHHHHHHHHHHHH-HhCCccchhhhHHHHHHHHHHHHhCCC-CCCCCeEEEE
Q 039995 22 LGYAINTSEELNFVKDIAA-ATGVVLDPVYSGKAAYGMLNDMAQNPK-KWEGRKVLFV 77 (118)
Q Consensus 22 ~GYG~~t~e~~~~I~~~a~-~eGI~LDPVYTgKa~~gL~~~l~~~g~-~~~g~rVLfi 77 (118)
-||.++++.-.+++..+.+ ...|...|+=|||++..++- +.+.-. -..+.++|++
T Consensus 55 ~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~-~~~~l~~~~~~~~~lil 111 (410)
T 2j0s_A 55 YGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSIS-VLQCLDIQVRETQALIL 111 (410)
T ss_dssp HTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHH-HHHTCCTTSCSCCEEEE
T ss_pred cCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHH-HHHHHhhccCCceEEEE
Confidence 4788899999999988765 45677899999999988764 332111 1134566655
No 59
>1lbu_A Muramoyl-pentapeptide carboxypeptidase; hydrolase, nuclear receptor; 1.80A {Streptomyces albus} SCOP: a.20.1.1 d.65.1.1
Probab=45.94 E-value=25 Score=25.63 Aligned_cols=36 Identities=11% Similarity=0.055 Sum_probs=32.2
Q ss_pred ccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHH
Q 039995 25 AINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLN 60 (118)
Q Consensus 25 G~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~ 60 (118)
|...+.+.++++.|-+..|+..|-+...+.+..|..
T Consensus 40 G~fg~~t~~AV~~FQ~~~gL~~dG~vg~~T~~~L~~ 75 (213)
T 1lbu_A 40 GQFGPATKAAVQRFQSAYGLAADGIAGPATFNKIYQ 75 (213)
T ss_dssp SBCCHHHHHHHHHHHHHTTSCCSSCBCHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHH
Confidence 457899999999999999999999998888888864
No 60
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=44.18 E-value=11 Score=27.86 Aligned_cols=57 Identities=14% Similarity=0.119 Sum_probs=38.7
Q ss_pred cCCCcccCCHHHHHHHHHHHHH--hCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEE
Q 039995 20 KGLGYAINTSEELNFVKDIAAA--TGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFV 77 (118)
Q Consensus 20 ~g~GYG~~t~e~~~~I~~~a~~--eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfi 77 (118)
..-||..+++.-.+++..+.+. ..+...|+=+||++..+.-.+..- .-.++.++|++
T Consensus 22 ~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~-~~~~~~~~lil 80 (367)
T 1hv8_A 22 RNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELV-NENNGIEAIIL 80 (367)
T ss_dssp HHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHS-CSSSSCCEEEE
T ss_pred HHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHh-cccCCCcEEEE
Confidence 3458889999999999987765 346669999999998765422221 11134566665
No 61
>3lma_A Stage V sporulation protein AD (spovad); NESG, structural genomics, PSI-2, protein structure initiative; 1.99A {Bacillus licheniformis} PDB: 3lm6_A
Probab=43.39 E-value=41 Score=27.44 Aligned_cols=55 Identities=22% Similarity=0.361 Sum_probs=39.0
Q ss_pred CCHHHHHHHHHHHHHhCCccchhhh--HHHHHH----------------------HHHHHHhCCCCCCCCeEEEEecCCc
Q 039995 27 NTSEELNFVKDIAAATGVVLDPVYS--GKAAYG----------------------MLNDMAQNPKKWEGRKVLFVHTGGL 82 (118)
Q Consensus 27 ~t~e~~~~I~~~a~~eGI~LDPVYT--gKa~~g----------------------L~~~l~~~g~~~~g~rVLfiHTGGl 82 (118)
..+.-.+.++++.++.|+.++.+|+ |-+++. ++..+++ |++ +||||+=||.+
T Consensus 235 L~q~g~~il~~l~~~~g~~~~~~~~dcg~~iy~~~~~~~~ggsg~~csa~v~~~~~~~~~~~-g~~---~ril~~~tGal 310 (347)
T 3lma_A 235 LSGVGSPILKDLLKEEGINVGTKHNDCGLMIYTPDQQVFAGGSGCACSAVVTFAHIFKEIEA-GRL---NRVLVVATGAL 310 (347)
T ss_dssp CHHHHHHHHHHHHHHTTCCCGGGEEEGGGTSSCC---------CCCCHHHHHHHTHHHHHHT-TSC---SEEEEEEEEEC
T ss_pred hHHHHHHHHHHHHHHcCCChhHCccccceEEecCCCcccCCCCccccHHHHHHHHHHHHHhc-Ccc---cEEEEEecccc
Confidence 3456677789999999999999998 444332 3333443 444 69999999987
Q ss_pred ccc
Q 039995 83 LGL 85 (118)
Q Consensus 83 ~gl 85 (118)
..-
T Consensus 311 ls~ 313 (347)
T 3lma_A 311 LSP 313 (347)
T ss_dssp CCH
T ss_pred cCc
Confidence 653
No 62
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=39.50 E-value=25 Score=24.09 Aligned_cols=41 Identities=15% Similarity=-0.007 Sum_probs=32.3
Q ss_pred cCCCcccCCHHHHHHHHHHHHH-hCCccchhhhHHHHHHHHH
Q 039995 20 KGLGYAINTSEELNFVKDIAAA-TGVVLDPVYSGKAAYGMLN 60 (118)
Q Consensus 20 ~g~GYG~~t~e~~~~I~~~a~~-eGI~LDPVYTgKa~~gL~~ 60 (118)
..-||-.+++.-.+++..+.+. ..+...|+=|||++..++-
T Consensus 17 ~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~ 58 (207)
T 2gxq_A 17 HGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALP 58 (207)
T ss_dssp HHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHH
T ss_pred HHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHH
Confidence 3468889999999999887663 4566799999999887664
No 63
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=38.48 E-value=27 Score=25.41 Aligned_cols=73 Identities=16% Similarity=0.262 Sum_probs=44.8
Q ss_pred ccCCHHHHHHHHHHHHHhCCcc-chhhhHH---HHHHHHHHHHh--CCCCCCCCeEEEEec-CCcccccccHHHhhHhhc
Q 039995 25 AINTSEELNFVKDIAAATGVVL-DPVYSGK---AAYGMLNDMAQ--NPKKWEGRKVLFVHT-GGLLGLFDKVDQMAPLLK 97 (118)
Q Consensus 25 G~~t~e~~~~I~~~a~~eGI~L-DPVYTgK---a~~gL~~~l~~--~g~~~~g~rVLfiHT-GGl~glf~~~~~~~~~~~ 97 (118)
+..++...++.+.+.+..|+++ =|.|.+= ++--+++.+-+ ......++.|.++-| ||..|-..-..++++.+.
T Consensus 52 ~~~p~~~~~l~~~i~~aD~~ii~tPeYn~s~pg~LKn~iDwlsr~~~~~~~~gKpv~~v~~S~G~~Gg~~a~~~Lr~vl~ 131 (190)
T 3u7r_A 52 ADAPESVLRLKDRIEHSDAVLAITPEYNRSYPGMIKNAIDWATRPYGQNSWKGKPAAVIGTSPGVIGAALAQARLKNDLL 131 (190)
T ss_dssp GGCCHHHHHHHHHHHTSSEEEEECCCBTTBCCHHHHHHHHHHHCSTTCCTTTTCEEEEEEEESSTTTTHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHhCCcEEEechhhcccCCHHHHHHHHHhcccccCCccCCCEEEEEEeCCchhhHHHHHHHHHHHHH
Confidence 3456778888889999998654 7999752 23333433321 112336888877754 676665444556666654
No 64
>1xtt_A Probable uracil phosphoribosyltransferase; tetramer, type 1 phosphoribosyltransferase, UMP complex; HET: U5P; 1.80A {Sulfolobus solfataricus} SCOP: c.61.1.1 PDB: 1vst_A* 1xtu_A* 1xtv_A* 3g6w_A*
Probab=38.39 E-value=26 Score=26.46 Aligned_cols=52 Identities=10% Similarity=0.313 Sum_probs=34.6
Q ss_pred hCCccchh-hhHHHHHHHHHHHHhCCCCCCCCeEEEEecCCcccccccHHHhhHhhccccccc
Q 039995 42 TGVVLDPV-YSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGLLGLFDKVDQMAPLLKNWSRMD 103 (118)
Q Consensus 42 eGI~LDPV-YTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGGl~glf~~~~~~~~~~~~~~~~~ 103 (118)
.=|++||+ .||.++.+.++.+++ |. + ++|.++. +.+..+.++.+.+.++...
T Consensus 135 ~VilvDp~laTG~T~~~ai~~L~~-G~--p-~~I~~~~------~vaa~~gl~~l~~~~P~v~ 187 (216)
T 1xtt_A 135 NVIIADPMIATASTMLKVLEEVVK-AN--P-KRIYIVS------IISSEYGVNKILSKYPFIY 187 (216)
T ss_dssp EEEEECSEESSSHHHHHHHHHHGG-GC--C-SEEEEEC------SEEEHHHHHHHHHHCTTSE
T ss_pred eEEEEcCCccchHHHHHHHHHHHh-CC--C-CeEEEEE------EecCHHHHHHHHHHCCCcE
Confidence 56888885 789999999988887 62 2 6888874 2333455555555565533
No 65
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=38.32 E-value=31 Score=24.26 Aligned_cols=33 Identities=24% Similarity=0.177 Sum_probs=26.6
Q ss_pred CcccCCHHHHHHHHHHHHHhCCccchhhhHHHH
Q 039995 23 GYAINTSEELNFVKDIAAATGVVLDPVYSGKAA 55 (118)
Q Consensus 23 GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~ 55 (118)
|.|....+..+.+++++++.|+++-.++.||..
T Consensus 42 G~g~~~~~a~~~l~~lae~~~iPV~~t~~gkg~ 74 (170)
T 3cf4_G 42 GTLALDPELLDRVVKISKAANIPIAATGSSLAV 74 (170)
T ss_dssp CSTTCCHHHHHHHHHHHHHHTCCEEECTTTHHH
T ss_pred CCCccchhHHHHHHHHHHHhCCCEEECcccCcc
Confidence 455667788889999999999999887777754
No 66
>1hnj_A Beta-ketoacyl-acyl carrier protein synthase III; FABH, transferase; HET: MLC; 1.46A {Escherichia coli} SCOP: c.95.1.2 c.95.1.2 PDB: 1hn9_A* 1hnh_A* 1hnd_A* 1hnk_A 1mzs_A* 2eft_A* 2gyo_A* 3il9_A 1ebl_A*
Probab=38.01 E-value=83 Score=23.48 Aligned_cols=45 Identities=20% Similarity=0.248 Sum_probs=30.8
Q ss_pred HHHHHHhCCccchhhhHH----------HHHHHHHHHHhCCCCCCCCeEEEEecCC
Q 039995 36 KDIAAATGVVLDPVYSGK----------AAYGMLNDMAQNPKKWEGRKVLFVHTGG 81 (118)
Q Consensus 36 ~~~a~~eGI~LDPVYTgK----------a~~gL~~~l~~~g~~~~g~rVLfiHTGG 81 (118)
+.+++.-|+..|++++-| .+.+|.+ +.+.+++.+|.+||++=.|.
T Consensus 252 d~i~~~lg~~~~~~~~~~~~~Gn~~~As~~~~L~~-~~~~~~~~~G~~vll~~~G~ 306 (317)
T 1hnj_A 252 SATAKKLGMSMDNVVVTLDRHGNTSAASVPCALDE-AVRDGRIKPGQLVLLEAFGG 306 (317)
T ss_dssp HHHHHHTTCCGGGBCCCHHHHCBCGGGHHHHHHHH-HHHTTCSCTTCEEEEEEEET
T ss_pred HHHHHHcCCCHHHhHhhHhhhCcHHHHHHHHHHHH-HHHhCCCCCCCEEEEEEEch
Confidence 345566788777777544 3556654 55557788899999988774
No 67
>3il3_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid biosynthesis, antibiotic, acyltransferase, cytoplasm, lipid synthesis; 2.70A {Haemophilus influenzae}
Probab=36.26 E-value=95 Score=23.84 Aligned_cols=50 Identities=14% Similarity=0.230 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHhCCccchhh----------hHHHHHHHHHHHHhCCCCCCCCeEEEEecCC
Q 039995 31 ELNFVKDIAAATGVVLDPVY----------SGKAAYGMLNDMAQNPKKWEGRKVLFVHTGG 81 (118)
Q Consensus 31 ~~~~I~~~a~~eGI~LDPVY----------TgKa~~gL~~~l~~~g~~~~g~rVLfiHTGG 81 (118)
-...++.+++.-|++.|.++ ++-.+..|.+ +.+++++.+|.+||++=.|+
T Consensus 253 ~~~i~~~~~~~lgl~~ek~~~~l~~~GNt~sasi~~~L~~-~~~~g~~~~Gd~vll~~~G~ 312 (323)
T 3il3_A 253 NLRIITATAKKLEMDMSQVVVTLDKYANNSAATVPVALDE-AIRDGRIQRGQLLLLEAFGG 312 (323)
T ss_dssp CHHHHHHHHHHTTCCGGGBCCCHHHHCBCGGGHHHHHHHH-HHHTTSSCTTCEEEEEEEET
T ss_pred CHHHHHHHHHHcCcCHHHhhccHhhcCchHHHHHHHHHHH-HHHcCCCCCCCEEEEEEEeh
Confidence 34566777788888888765 5666777764 66667888999999997774
No 68
>3hpw_C Protein CCDA; alpha+beta, SH3 domain, intrinsically disordered, toxin/toxin repressor complex; 1.45A {Escherichia coli} PDB: 3g7z_C 3tcj_T
Probab=35.32 E-value=15 Score=20.71 Aligned_cols=21 Identities=19% Similarity=0.216 Sum_probs=17.1
Q ss_pred CHHHHHHHHHHHHHhCCccch
Q 039995 28 TSEELNFVKDIAAATGVVLDP 48 (118)
Q Consensus 28 t~e~~~~I~~~a~~eGI~LDP 48 (118)
+.+.++++..+..++|+++|-
T Consensus 12 N~~ai~~~N~~ve~~Gl~~d~ 32 (36)
T 3hpw_C 12 NQEGMAEVARFIEMNGSFADE 32 (36)
T ss_dssp HHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHH
Confidence 456788888899999999873
No 69
>2x7v_A Probable endonuclease 4; DNA repair protein, metal-binding, hydrolase, DNA damage, DN; 2.30A {Thermotoga maritima MSB8} PDB: 2x7w_A*
Probab=33.42 E-value=50 Score=23.73 Aligned_cols=57 Identities=19% Similarity=0.184 Sum_probs=33.0
Q ss_pred cCCHHHHHHHHHHHHHhCCcc----------------chhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCCccc
Q 039995 26 INTSEELNFVKDIAAATGVVL----------------DPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGLLG 84 (118)
Q Consensus 26 ~~t~e~~~~I~~~a~~eGI~L----------------DPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGGl~g 84 (118)
..+++..+.++...++.||.+ ||---.+++..+.+.+.....+ |.+.+.+|+|...+
T Consensus 43 ~~~~~~~~~~~~~l~~~gl~~~~~~~h~~~~~~~~~~~~~~r~~~~~~~~~~i~~A~~l--G~~~v~~~~g~~~~ 115 (287)
T 2x7v_A 43 LPSDEAATKFKREMKKHGIDWENAFCHSGYLINLASPKDDIWQKSVELLKKEVEICRKL--GIRYLNIHPGSHLG 115 (287)
T ss_dssp CCCHHHHHHHHHHHHHHTCCGGGEEEECCTTCCTTCSSHHHHHHHHHHHHHHHHHHHHH--TCCEEEECCEECTT
T ss_pred CCCHHHHHHHHHHHHHcCCCcceeEEecccccccCCCCHHHHHHHHHHHHHHHHHHHHc--CCCEEEEecCCCCC
Confidence 346788889999999999863 1111123333333322222123 56778889986543
No 70
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=33.24 E-value=41 Score=25.44 Aligned_cols=57 Identities=16% Similarity=0.094 Sum_probs=37.1
Q ss_pred CCCcccCCHHHHHHHHHHHH---HhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEE
Q 039995 21 GLGYAINTSEELNFVKDIAA---ATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFV 77 (118)
Q Consensus 21 g~GYG~~t~e~~~~I~~~a~---~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfi 77 (118)
--||-.+++--.++|..+.+ +.-|..=|+=|||++..++-.+..-..-..+.++|++
T Consensus 109 ~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil 168 (300)
T 3fmo_B 109 AMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCL 168 (300)
T ss_dssp HTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEE
T ss_pred HcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEE
Confidence 35899999998888888765 3446667999999988766433321111123356665
No 71
>3bkh_A Phikz144, lytic transglycosylase; bacteriophage, endolysin, peptidoglycan, cell WALL degradation, lysozyme, hydrolase; 2.50A {Pseudomonas phage phikz} PDB: 3bkv_A*
Probab=32.77 E-value=57 Score=25.00 Aligned_cols=36 Identities=11% Similarity=0.074 Sum_probs=32.3
Q ss_pred ccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHH
Q 039995 25 AINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLN 60 (118)
Q Consensus 25 G~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~ 60 (118)
|...+.+.++++.|-+..|+..|-+-..+.+..|..
T Consensus 40 G~fg~~T~~AV~~FQ~~~gL~~dGivg~~T~~~L~~ 75 (268)
T 3bkh_A 40 GIFGNNTFNQVVKFQKDNCLDSDGIVGKNTWAELFS 75 (268)
T ss_dssp SBCCHHHHHHHHHHHHHTTSCCSSCBCHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHhCCCCCCcCCHHHHHHHHH
Confidence 457899999999999999999999998888888864
No 72
>3erv_A Putative C39-like peptidase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.10A {Bacillus anthracis}
Probab=32.58 E-value=20 Score=27.49 Aligned_cols=52 Identities=15% Similarity=0.345 Sum_probs=34.5
Q ss_pred CCCcccCCHHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCCc
Q 039995 21 GLGYAINTSEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGL 82 (118)
Q Consensus 21 g~GYG~~t~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGGl 82 (118)
.+|||...+.+.++.+..... -..| .||+.+-.|++.+.+ |..|+.|.|.+.
T Consensus 102 ~~g~giy~~~i~~~a~~y~~~--~~~d--ltG~sl~~L~~~I~~------G~PVIv~~t~~~ 153 (236)
T 3erv_A 102 ESGYGVYHGPLFQLAKKYLPN--KAVD--LTGKSIEELYKSVKA------GQPVVIITNATF 153 (236)
T ss_dssp SCBCCCCHHHHHHHHHHHCTT--TEEE--CTTSCHHHHHHHHHT------TCCEEEEEETTS
T ss_pred CCcceeecHHHHHHHHHHhhc--ceee--cCCCCHHHHHHHHHC------CCeEEEEEeCCc
Confidence 357887777777666665321 1222 478899999876543 567999988764
No 73
>3d2y_A N-acetylmuramoyl-L-alanine amidase AMID; zinc amidase, PGRP, peptidoglycan recognizing protein, AMPD, acetylmuramyl-L-alanine amidase; HET: AH0; 1.75A {Escherichia coli} PDB: 2bh7_A 2wkx_A 2bgx_A* 3d2z_A
Probab=31.77 E-value=62 Score=24.76 Aligned_cols=36 Identities=3% Similarity=-0.058 Sum_probs=24.3
Q ss_pred ccCCHHHHHHHHHHHHHh-CCccchhhhHHHHHHHHH
Q 039995 25 AINTSEELNFVKDIAAAT-GVVLDPVYSGKAAYGMLN 60 (118)
Q Consensus 25 G~~t~e~~~~I~~~a~~e-GI~LDPVYTgKa~~gL~~ 60 (118)
|..+++..++++.|-++. |...|-+-..+.+..|..
T Consensus 217 g~~~~~t~~aV~aFQ~~~r~l~~dGi~d~~T~~~L~~ 253 (261)
T 3d2y_A 217 DMTPREQRRVIMAFQMHFRPTLYNGEADAETQAIAEA 253 (261)
T ss_dssp SCCHHHHHHHHHHHHHHHCTTCCSCCCBHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHH
Confidence 344566677777777776 777777777777666654
No 74
>4dfe_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; ssgcid, seattle structural genomics center for infectious DI transferase; 2.35A {Burkholderia xenovorans}
Probab=31.77 E-value=1.3e+02 Score=22.92 Aligned_cols=48 Identities=13% Similarity=0.243 Sum_probs=34.8
Q ss_pred HHHHHHHHHhCCccchhh----------hHHHHHHHHHHHHhCCCCCCCCeEEEEecCC
Q 039995 33 NFVKDIAAATGVVLDPVY----------SGKAAYGMLNDMAQNPKKWEGRKVLFVHTGG 81 (118)
Q Consensus 33 ~~I~~~a~~eGI~LDPVY----------TgKa~~gL~~~l~~~g~~~~g~rVLfiHTGG 81 (118)
..++.+++.-|++.|.++ ++-.+..|.+ +.+++++.+|.+||++=.|+
T Consensus 265 ~i~~~~~~~lgl~~~~~~~~l~~~GNt~sasi~~~L~~-~~~~g~~~~Gd~vll~~~G~ 322 (333)
T 4dfe_A 265 RIMQSTCRKLGLPQERMIVTVGEHGNTSAASIPLALDV-AVRDGRIKRGQNVLIEGVGG 322 (333)
T ss_dssp HHHHHHHHHTTCCGGGBCCCHHHHCBCGGGHHHHHHHH-HHHTTCSCTTCEEEEEEEET
T ss_pred HHHHHHHHHhCCCHHHhhhhHHhcCchHHHHHHHHHHH-HHHcCCCCCCCEEEEEEEch
Confidence 456667777788888764 4556667654 66667888899999987775
No 75
>3gwa_A 3-oxoacyl-(acyl-carrier-protein) synthase III; structural genomics, synthetase; 1.60A {Burkholderia pseudomallei} PDB: 3gwe_A
Probab=31.29 E-value=1.3e+02 Score=23.52 Aligned_cols=49 Identities=10% Similarity=0.083 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhCCccchhh----------hHHHHHHHHHHHHhCCCCCCCCeEEEEecCC
Q 039995 32 LNFVKDIAAATGVVLDPVY----------SGKAAYGMLNDMAQNPKKWEGRKVLFVHTGG 81 (118)
Q Consensus 32 ~~~I~~~a~~eGI~LDPVY----------TgKa~~gL~~~l~~~g~~~~g~rVLfiHTGG 81 (118)
...++.+++.-||+.|.++ ++-.+..|. ++.+.+++.+|.+||++=.|+
T Consensus 296 ~~i~~~~~~~Lgl~~ek~~~~l~~~GNtssAsipl~L~-~~~~~g~~~~Gd~vll~~fG~ 354 (365)
T 3gwa_A 296 RFMLDALRKKMKIPEHKFPVLMEHCGNTVSSTLPLALE-TMRANGTLARGMRLMLLGFGV 354 (365)
T ss_dssp HHHHHHHHHHHTCCGGGSCCCCTTTCBCGGGHHHHHHH-HHHHTTCCCTTCEEEEEEEET
T ss_pred HHHHHHHHHHhCCCHHHHHHHHhcccchHHHHHHHHHH-HHHHcCCCCCCCEEEEEEEeh
Confidence 4456666777788877765 466677765 466667888899999987775
No 76
>3svl_A Protein YIEF; E. coli CHRR enzyme, chromate bioremediation, tetramer role, mutant enzymes, oxidoreductase; HET: FMN; 2.20A {Escherichia coli}
Probab=30.83 E-value=67 Score=22.93 Aligned_cols=72 Identities=18% Similarity=0.235 Sum_probs=45.8
Q ss_pred CCHHHHHHHHHHHHHhCCcc-chhhhHH---HHHHHHHHHHhC-CCCCCCCeEEEEec-CCcccccccHHHhhHhhcc
Q 039995 27 NTSEELNFVKDIAAATGVVL-DPVYSGK---AAYGMLNDMAQN-PKKWEGRKVLFVHT-GGLLGLFDKVDQMAPLLKN 98 (118)
Q Consensus 27 ~t~e~~~~I~~~a~~eGI~L-DPVYTgK---a~~gL~~~l~~~-g~~~~g~rVLfiHT-GGl~glf~~~~~~~~~~~~ 98 (118)
.+++..++++.+.+..+|++ =|+|.+- .+-.+++.+... .....|+++.++-| ||..|-..-.+.+++.+..
T Consensus 59 ~~~~~~~l~~~i~~AD~iv~~sP~y~~~~~~~lK~~iD~~~~~~~~~~~gK~~~~~~~s~g~~gg~~a~~~Lr~~l~~ 136 (193)
T 3svl_A 59 FPATVEALAEQIRQADGVVIVTPEYNYSVPGGLKNAIDWLSRLPDQPLAGKPVLIQTSSMGVIGGARCQYHLRQILVF 136 (193)
T ss_dssp SCHHHHHHHHHHHHSSEEEEEECCBTTBCCHHHHHHHHHHHTSTTCTTTTCEEEEEEECSSTTTTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCEEEEEecccCCCCCHHHHHHHHHHhhcCccccCCCeEEEEEeCCCCcchHHHHHHHHHHHHH
Confidence 36788889999999999877 5999753 355555544331 12236888888876 6655532234556655543
No 77
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=30.08 E-value=56 Score=24.61 Aligned_cols=56 Identities=11% Similarity=0.064 Sum_probs=37.7
Q ss_pred CCcccCCHHHHHHHHHHHH-HhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEE
Q 039995 22 LGYAINTSEELNFVKDIAA-ATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFV 77 (118)
Q Consensus 22 ~GYG~~t~e~~~~I~~~a~-~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfi 77 (118)
-||-.+++.-.++|..+.+ ...|...|+=+||++..++-.+..-..-..+.++|++
T Consensus 58 ~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil 114 (414)
T 3eiq_A 58 YGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVL 114 (414)
T ss_dssp TTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEE
T ss_pred cCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEE
Confidence 4788899999999877665 3568889999999988765433221111134556555
No 78
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=29.80 E-value=52 Score=23.86 Aligned_cols=39 Identities=21% Similarity=0.116 Sum_probs=32.2
Q ss_pred CCcccCCHHHHHHHHHHHH-HhCCccchhhhHHHHHHHHH
Q 039995 22 LGYAINTSEELNFVKDIAA-ATGVVLDPVYSGKAAYGMLN 60 (118)
Q Consensus 22 ~GYG~~t~e~~~~I~~~a~-~eGI~LDPVYTgKa~~gL~~ 60 (118)
-||-.+++.-.+++..+.+ ...++..|+=+||++..+.-
T Consensus 12 ~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~ 51 (337)
T 2z0m_A 12 MGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIP 51 (337)
T ss_dssp TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHH
Confidence 5788899999999888765 45688899999999988774
No 79
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=29.57 E-value=29 Score=25.25 Aligned_cols=39 Identities=21% Similarity=0.127 Sum_probs=30.7
Q ss_pred CCCcccCCHHHHHHHHHHHHH-hCCccchhhhHHHHHHHH
Q 039995 21 GLGYAINTSEELNFVKDIAAA-TGVVLDPVYSGKAAYGML 59 (118)
Q Consensus 21 g~GYG~~t~e~~~~I~~~a~~-eGI~LDPVYTgKa~~gL~ 59 (118)
.-||..+++.-.+++..+.+. ..|..-|+=|||++..++
T Consensus 60 ~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~ 99 (249)
T 3ber_A 60 QLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFAL 99 (249)
T ss_dssp HTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHH
T ss_pred HcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHH
Confidence 457888999999999887663 446678999999987654
No 80
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=29.07 E-value=43 Score=26.46 Aligned_cols=40 Identities=18% Similarity=0.140 Sum_probs=32.3
Q ss_pred CCCcccCCHHHHHHHHHHHH---HhCCccchhhhHHHHHHHHH
Q 039995 21 GLGYAINTSEELNFVKDIAA---ATGVVLDPVYSGKAAYGMLN 60 (118)
Q Consensus 21 g~GYG~~t~e~~~~I~~~a~---~eGI~LDPVYTgKa~~gL~~ 60 (118)
.-||-.+++--.+++..+.+ ..-|..-|+=|||++..++.
T Consensus 109 ~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~ 151 (479)
T 3fmp_B 109 AMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLA 151 (479)
T ss_dssp HTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHH
T ss_pred HcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHH
Confidence 35888899988889888765 34577889999999987764
No 81
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=28.69 E-value=57 Score=22.89 Aligned_cols=72 Identities=18% Similarity=0.266 Sum_probs=43.9
Q ss_pred CCHHHHHHHHHHHHHhCCcc-chhhhHHHHHHHHHHHHhC--CCCCCCCeEEEEecCCcccccccHH-HhhHhhccc
Q 039995 27 NTSEELNFVKDIAAATGVVL-DPVYSGKAAYGMLNDMAQN--PKKWEGRKVLFVHTGGLLGLFDKVD-QMAPLLKNW 99 (118)
Q Consensus 27 ~t~e~~~~I~~~a~~eGI~L-DPVYTgKa~~gL~~~l~~~--g~~~~g~rVLfiHTGGl~glf~~~~-~~~~~~~~~ 99 (118)
.+++..+.+..+.+..+|.+ =|+|.+..-..+. ...+. .....+++++++-|||..+-..-.+ .+...+..+
T Consensus 56 ~~~~~~~~~~~i~~aD~ii~~sP~y~~~~p~~lK-~~ld~l~~~~~~gK~~~~~~tgg~~~~~~a~~~~l~~~l~~~ 131 (197)
T 2vzf_A 56 SNAKLKEAVDATCNADGLIVATPIYKASYTGLLK-AFLDILPQFALAGKAALPLATGGSPAHVLALDYGLRPVLHSM 131 (197)
T ss_dssp TSHHHHHHHHHHHHCSEEEEEEECBTTBCCHHHH-HHHTTSCTTTTTTCEEEEEEEESSGGGGGHHHHTHHHHHHTT
T ss_pred CcHHHHHHHHHHHHCCEEEEEeCccCCCCCHHHH-HHHHhccccccCCCEEEEEEECCCcchhhHHHHHHHHHHHHc
Confidence 35677777888888888766 4999865333322 23221 1123588999999998876432232 456566543
No 82
>3mfq_A TROA, high-affinity zinc uptake system protein ZNUA; metal binding protein; 2.60A {Streptococcus suis} SCOP: c.92.2.0
Probab=28.34 E-value=1.2e+02 Score=23.16 Aligned_cols=50 Identities=6% Similarity=0.076 Sum_probs=38.1
Q ss_pred ccCCHHHHHHHHHHHHHhCC---ccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEec
Q 039995 25 AINTSEELNFVKDIAAATGV---VLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHT 79 (118)
Q Consensus 25 G~~t~e~~~~I~~~a~~eGI---~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHT 79 (118)
..|++..++.+.+..++++| +.||..+-|..-.+.+ +.+. .|-+|+.+++
T Consensus 194 ~eps~~~l~~l~~~ik~~~v~~if~e~~~~~~~~~~l~~-~a~~----~g~~v~~l~~ 246 (282)
T 3mfq_A 194 SEVANSDMIETVNLIIDHNIKAIFTESTTNPERMKKLQE-AVKA----KGGQVEVVTG 246 (282)
T ss_dssp SCCCHHHHHHHHHHHHHHTCCEEECBTTSCTHHHHHHHH-HHHT----TSCCCEEETT
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHH-HHHh----cCCceEEecc
Confidence 35789999999999998885 6899999998888764 3332 2557777765
No 83
>4fxe_A Antitoxin RELB; toxin/antitoxin system, toxin, nuclease, translational contr response, RELB, ribosome, toxin-toxin inhibitor compl; 2.75A {Escherichia coli} PDB: 2k29_A 2kc8_B
Probab=28.32 E-value=75 Score=20.38 Aligned_cols=33 Identities=6% Similarity=-0.030 Sum_probs=23.9
Q ss_pred CHHHHHHHHHHHHHhCCccchhh----hHHHHHHHHH
Q 039995 28 TSEELNFVKDIAAATGVVLDPVY----SGKAAYGMLN 60 (118)
Q Consensus 28 t~e~~~~I~~~a~~eGI~LDPVY----TgKa~~gL~~ 60 (118)
|....-|+++++++.|||.++.- +..++..+.+
T Consensus 28 s~Ai~~fl~~v~~~~~iPF~~~~~~~~~~~~l~~~~e 64 (79)
T 4fxe_A 28 SEALRLMLEYIADNERLPFKQTLLSDEDAELVEIVKE 64 (79)
T ss_dssp HHHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCcccCCCHhHHHHHHHHHH
Confidence 45677889999999999998764 4555555443
No 84
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A
Probab=27.65 E-value=1.8e+02 Score=21.35 Aligned_cols=55 Identities=11% Similarity=0.183 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCCccc
Q 039995 29 SEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGLLG 84 (118)
Q Consensus 29 ~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGGl~g 84 (118)
+++.++|..+.. .-..-.-+.+++++......+...+..+...++|++-|-|...
T Consensus 87 ~~l~~~i~~l~~-~~~~~G~T~~~~aL~~a~~~l~~~~~r~~~~~~iillTDG~~~ 141 (281)
T 4hqf_A 87 EKALIIIKSLLS-TNLPYGKTSLTDALLQVRKHLNDRINRENANQLVVILTDGIPD 141 (281)
T ss_dssp HHHHHHHHHHHH-TTGGGCSCCHHHHHHHHHHHHHTSCCCTTCEEEEEEEESSCCS
T ss_pred HHHHHHHHHHhh-ccCCCCCccHHHHHHHHHHHHHhccCCCCCCEEEEEEecCCCC
Confidence 467777877653 1111225788999988877666544333457888888988654
No 85
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=27.12 E-value=78 Score=22.73 Aligned_cols=71 Identities=20% Similarity=0.302 Sum_probs=45.7
Q ss_pred CCHHHHHHHHHHHHHhCCccc-hhhhHHH---HHHHHHHHHhCC-CCCCCCeEEEEecC-CcccccccHHHhhHhhc
Q 039995 27 NTSEELNFVKDIAAATGVVLD-PVYSGKA---AYGMLNDMAQNP-KKWEGRKVLFVHTG-GLLGLFDKVDQMAPLLK 97 (118)
Q Consensus 27 ~t~e~~~~I~~~a~~eGI~LD-PVYTgKa---~~gL~~~l~~~g-~~~~g~rVLfiHTG-Gl~glf~~~~~~~~~~~ 97 (118)
.+++..+.++++.+..+|++= |+|.+-. +-.+++.+...+ ....|++++++-|+ |..|-..-.+.+++.+.
T Consensus 60 ~~~~~~~~~~~i~~AD~iVi~tP~Y~~s~p~~LK~~iD~~~~~~~~~l~gK~v~~v~tsgg~~g~~~a~~~Lr~il~ 136 (199)
T 4hs4_A 60 FPAPVLTMAQQIATADAVVIVTPEYNYSVPGVLKNAIDWLSRVSPQPLAGKPVALVTASPGMIGGARAQNHLRQSLV 136 (199)
T ss_dssp CCHHHHHHHHHHHHSSEEEEEECCBTTBCCHHHHHHHHHHTTSSSCTTTTCEEEEEEECSSSSCSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCEEEEEcCccCCCcCHHHHHHHHHhcccCCcccCCCEEEEEEeCCCCcccHHHHHHHHHHHH
Confidence 467788899999999997764 9997533 555555444311 23368999888885 44553333445665554
No 86
>3s21_A 3-oxoacyl-[ACP] synthase III; non-decarboxylative claisen condensation reaction, transfera; HET: CER; 1.70A {Xanthomonas campestris PV} PDB: 3s23_A* 3row_A 3s1z_A 3s20_A* 3fk5_A
Probab=26.54 E-value=1.4e+02 Score=22.94 Aligned_cols=49 Identities=8% Similarity=0.131 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhCCccchhh----------hHHHHHHHHHHHHhCCCCCCCCeEEEEecCC
Q 039995 32 LNFVKDIAAATGVVLDPVY----------SGKAAYGMLNDMAQNPKKWEGRKVLFVHTGG 81 (118)
Q Consensus 32 ~~~I~~~a~~eGI~LDPVY----------TgKa~~gL~~~l~~~g~~~~g~rVLfiHTGG 81 (118)
...++.+++.-||+.|.++ ++=.+..|.+ +.++|++.+|.+||++=.|.
T Consensus 276 ~~i~~~~~~~lgl~~ek~~~~l~~~GNt~sasi~~~L~~-~~~~g~~~~Gd~vll~~~G~ 334 (345)
T 3s21_A 276 RPHTAAFVKSFGIDPAKVMTIFGEHGNIGPASVPIVLSK-LKELGRLKKGDRIALLGIGS 334 (345)
T ss_dssp HHHHHHHHHHHTCCGGGBCCCHHHHCBCGGGHHHHHHHH-HHHHTCCCTTCEEEEEEEET
T ss_pred HHHHHHHHHHcCcCHHHceeeHhhcCchHHHHHHHHHHH-HHHcCCCCCCCEEEEEEECh
Confidence 3456667777788888754 4666777764 55557888899999988775
No 87
>2j6v_A UV endonuclease, UVDE; plasmid, TIM barrel, DNA repair, DNA binding protein, lyase; HET: KCX ALY; 1.55A {Thermus thermophilus} PDB: 3bzg_A 3c0s_A* 3c0l_A 3c0q_A* 3bzj_A
Probab=26.34 E-value=1.1e+02 Score=23.56 Aligned_cols=70 Identities=24% Similarity=0.238 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHhCCcc-------------chhhhHHHHHHHHHHHHhCCCCCCC-CeEEEEecCCcccccccHHHhhH
Q 039995 29 SEELNFVKDIAAATGVVL-------------DPVYSGKAAYGMLNDMAQNPKKWEG-RKVLFVHTGGLLGLFDKVDQMAP 94 (118)
Q Consensus 29 ~e~~~~I~~~a~~eGI~L-------------DPVYTgKa~~gL~~~l~~~g~~~~g-~rVLfiHTGGl~glf~~~~~~~~ 94 (118)
++..+.+++.+++.||.+ ||----|++..+.+.+.....+.-. . .+.+|.|+..+- ..+.++.
T Consensus 102 ~~~~~~~~~~~~~~gi~i~~H~py~iNL~S~~~e~re~Si~~l~~~l~~a~~lG~~~a-~~v~HpG~~~~~--~e~~~~r 178 (301)
T 2j6v_A 102 EEELARLGALARAFGQRLSMHPGQYVNPGSPDPEVVERSLAELRYSARLLSLLGAEDG-VLVLHLGGAYGE--KGKALRR 178 (301)
T ss_dssp HHHHHHHHHHHHHTTCEEEECCCTTCCTTCSCHHHHHHHHHHHHHHHHHHHHTTCTTC-EEEEECCCCTTC--HHHHHHH
T ss_pred HHHHHHHHHHHHHcCCeEEEeCchhhcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCC-EEEECCCcCCCC--HHHHHHH
Confidence 467778888888888733 3322356666666554433233111 3 788999986543 2334444
Q ss_pred hhccccc
Q 039995 95 LLKNWSR 101 (118)
Q Consensus 95 ~~~~~~~ 101 (118)
..+++++
T Consensus 179 ~~e~l~~ 185 (301)
T 2j6v_A 179 FVENLRG 185 (301)
T ss_dssp HHHHHTT
T ss_pred HHHHHhH
Confidence 4444443
No 88
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A*
Probab=25.52 E-value=1.3e+02 Score=22.09 Aligned_cols=55 Identities=11% Similarity=0.112 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHhCCccchhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCCccc
Q 039995 29 SEELNFVKDIAAATGVVLDPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGLLG 84 (118)
Q Consensus 29 ~e~~~~I~~~a~~eGI~LDPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGGl~g 84 (118)
+++.++|+.+.. ....-.-+.+++++....+.+...+..+...++|++-|-|.+.
T Consensus 84 ~~~~~~i~~l~~-~~~~~G~T~~~~AL~~a~~~l~~~~~r~~~~~~iIllTDG~~~ 138 (266)
T 4hqo_A 84 RQALSKVTELRK-TYTPYGTTSMTAALDEVQKHLNDRVNREKAIQLVILMTDGVPN 138 (266)
T ss_dssp HHHHHHHHHHHH-HCCCCSCCCHHHHHHHHHHHHHTTCSCTTSEEEEEEEECSCCS
T ss_pred HHHHHHHHHhhh-ccCCCCCCCHHHHHHHHHHHHhhccccCCCCeEEEEEccCCCC
Confidence 445566665541 1122336788999988876555543334456889999988764
No 89
>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*
Probab=25.02 E-value=33 Score=27.01 Aligned_cols=31 Identities=16% Similarity=0.162 Sum_probs=25.2
Q ss_pred CCcccCCHHHHHHHHHHHHHhCCc--cchhhhH
Q 039995 22 LGYAINTSEELNFVKDIAAATGVV--LDPVYSG 52 (118)
Q Consensus 22 ~GYG~~t~e~~~~I~~~a~~eGI~--LDPVYTg 52 (118)
+|.-.++++.++.|+++++++|++ +|-|||+
T Consensus 234 ~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g 266 (460)
T 3gju_A 234 GGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTG 266 (460)
T ss_dssp TTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTT
T ss_pred CCCccCCHHHHHHHHHHHHHcCCEEEEeccccC
Confidence 345577888999999999999975 4988884
No 90
>1nla_A Transcriptional repressor ARC; 3(10) helix, beta-ribbon, beta-sheet, structural switching; NMR {Enterobacteria phage P22} SCOP: a.43.1.1
Probab=24.86 E-value=51 Score=20.59 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=20.5
Q ss_pred cCCHHHHHHHHHHHHHhCCccch
Q 039995 26 INTSEELNFVKDIAAATGVVLDP 48 (118)
Q Consensus 26 ~~t~e~~~~I~~~a~~eGI~LDP 48 (118)
+.++++.+.|...|+.+|+-+.-
T Consensus 13 Rlp~eLh~~l~~~A~~~GrSlN~ 35 (64)
T 1nla_A 13 RWPREVLDLVRKVAEENGRSVNS 35 (64)
T ss_dssp SSCHHHHHHHHHHHHHHTSCHHH
T ss_pred eCCHHHHHHHHHHHHHhCCCHHH
Confidence 46899999999999999998864
No 91
>1baz_A ARC repressor; transcription regulation; 1.90A {Enterobacteria phage P22} SCOP: a.43.1.1 PDB: 1bdv_A* 1arq_A 1arr_A 1bdt_A* 1par_A* 1myk_A 1qtg_A 1b28_A 1myl_A
Probab=24.58 E-value=58 Score=19.11 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=19.7
Q ss_pred cCCHHHHHHHHHHHHHhCCccc
Q 039995 26 INTSEELNFVKDIAAATGVVLD 47 (118)
Q Consensus 26 ~~t~e~~~~I~~~a~~eGI~LD 47 (118)
+.++++.+.++..|+.+|.-+.
T Consensus 13 Rlp~eL~~~l~~~A~~~grS~N 34 (53)
T 1baz_A 13 RWPREVLDLVRKVAEENGRSVN 34 (53)
T ss_dssp ECCHHHHHHHHHHHHHTTCCHH
T ss_pred ECCHHHHHHHHHHHHHcCCCHH
Confidence 4689999999999999999875
No 92
>1i5e_A Uracil phosphoribosyltransferase; salvage pathway; HET: U5P; 3.00A {Bacillus caldolyticus} SCOP: c.61.1.1
Probab=24.47 E-value=62 Score=23.78 Aligned_cols=38 Identities=13% Similarity=0.393 Sum_probs=27.7
Q ss_pred HHHHhCCccchhhh-HHHHHHHHHHHHhCCCCCCCCeEEEEec
Q 039995 38 IAAATGVVLDPVYS-GKAAYGMLNDMAQNPKKWEGRKVLFVHT 79 (118)
Q Consensus 38 ~a~~eGI~LDPVYT-gKa~~gL~~~l~~~g~~~~g~rVLfiHT 79 (118)
+..+.=|++||+.+ |.++.+.++.+.+.|. ++|.++-.
T Consensus 122 i~~~~VllvDd~l~TG~T~~~a~~~L~~~G~----~~I~~~~l 160 (209)
T 1i5e_A 122 VEERDFIIVDPMLATGGSAVAAIDALKKRGA----KSIKFMCL 160 (209)
T ss_dssp TTTSEEEEECSEESSSHHHHHHHHHHHHTTC----CCEEEECS
T ss_pred cCCCEEEEEcCCCcCHHHHHHHHHHHHHcCC----CEEEEEEE
Confidence 44556789999886 9999999988887652 46766643
No 93
>4pga_A Glutaminase-asparaginase; bacterial amidohydrolase; 1.70A {Pseudomonas SP} SCOP: c.88.1.1 PDB: 1djp_A* 1djo_A* 3pga_1
Probab=24.37 E-value=29 Score=27.84 Aligned_cols=15 Identities=27% Similarity=0.364 Sum_probs=12.5
Q ss_pred CCeEEEEecCCcccc
Q 039995 71 GRKVLFVHTGGLLGL 85 (118)
Q Consensus 71 g~rVLfiHTGGl~gl 85 (118)
-+||+.|+|||..+.
T Consensus 9 ~~~I~ii~TGGTIa~ 23 (337)
T 4pga_A 9 LANVVILATGGTIAG 23 (337)
T ss_dssp CCEEEEEEEESGGGC
T ss_pred CCeEEEEECCChhcc
Confidence 368999999998764
No 94
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=24.21 E-value=97 Score=21.82 Aligned_cols=72 Identities=13% Similarity=0.117 Sum_probs=44.9
Q ss_pred CCHHHHHHHHHHHHHhCCccc-hhhhHH---HHHHHHHHHHhCC--------CCCCCCeEEEEecCCcccccccHHHhhH
Q 039995 27 NTSEELNFVKDIAAATGVVLD-PVYSGK---AAYGMLNDMAQNP--------KKWEGRKVLFVHTGGLLGLFDKVDQMAP 94 (118)
Q Consensus 27 ~t~e~~~~I~~~a~~eGI~LD-PVYTgK---a~~gL~~~l~~~g--------~~~~g~rVLfiHTGGl~glf~~~~~~~~ 94 (118)
.+++..+.++++.+..+|++= |+|-+- .+-.+++.+...+ ....|++++++-|+|..|.-.-...++.
T Consensus 54 ~~~~~~~~~~~i~~AD~iV~~sP~y~~~~p~~lK~~iD~~~~~~~~~~~~g~~~l~gK~~~i~~t~gg~g~~~~~~~l~~ 133 (192)
T 3fvw_A 54 VHPEVAHAREEVQEADAIWIFSPVYNYAIPGPVKNLLDWLSRSLDLSDPTGPSVLQDKIVTVSSVANGASPEEVFEDYRS 133 (192)
T ss_dssp CCHHHHHHHHHHHHCSEEEEECCCBTTBCCHHHHHHHHHHTSCSCSSCTTSCCTTTTCEEEEEEESCCC---CCSHHHHH
T ss_pred CcHHHHHHHHHHHhCCEEEEECcccccCCCHHHHHHHHHhhccccccCCCCCccCCCCEEEEEEeCCCcchhHHHHHHHH
Confidence 567788899999999998765 999752 3555555554311 2346889988888776443222344555
Q ss_pred hhcc
Q 039995 95 LLKN 98 (118)
Q Consensus 95 ~~~~ 98 (118)
.+..
T Consensus 134 ~l~~ 137 (192)
T 3fvw_A 134 LLPF 137 (192)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 95
>1wsa_A Asparaginase, asparagine amidohydrolase; periplasmic; 2.20A {Wolinella succinogenes} SCOP: c.88.1.1
Probab=23.64 E-value=35 Score=27.15 Aligned_cols=14 Identities=29% Similarity=0.430 Sum_probs=12.0
Q ss_pred CeEEEEecCCcccc
Q 039995 72 RKVLFVHTGGLLGL 85 (118)
Q Consensus 72 ~rVLfiHTGGl~gl 85 (118)
+||+.|+|||..+.
T Consensus 4 ~~I~vi~TGGTIa~ 17 (330)
T 1wsa_A 4 PQVTILATGGTIAG 17 (330)
T ss_dssp CEEEEEESSSCSCC
T ss_pred CEEEEEECCCcccc
Confidence 48999999998765
No 96
>1agx_A Glutaminase-asparaginase; bacterial amidohydrolase; 2.90A {Acinetobacter glutaminasificans} SCOP: c.88.1.1
Probab=23.55 E-value=33 Score=27.29 Aligned_cols=14 Identities=36% Similarity=0.553 Sum_probs=11.7
Q ss_pred CeEEEEecCCcccc
Q 039995 72 RKVLFVHTGGLLGL 85 (118)
Q Consensus 72 ~rVLfiHTGGl~gl 85 (118)
+||+.|+|||..+.
T Consensus 2 ~~I~ii~TGGTIa~ 15 (331)
T 1agx_A 2 NNVVIVATGGTIAG 15 (331)
T ss_dssp CEEEEEECBTTTSC
T ss_pred CEEEEEECCcccce
Confidence 47999999998664
No 97
>3aam_A Endonuclease IV, endoiv; DNA repair, base excision repair, BER, TIM barrel, endonucle hydrolase, structural genomics, NPPSFA; 1.58A {Thermus thermophilus}
Probab=22.75 E-value=1e+02 Score=22.08 Aligned_cols=54 Identities=17% Similarity=0.229 Sum_probs=32.5
Q ss_pred CCHHHHHHHHHHHHHhCC-cc------------chhhhHHHHHHHHHHHHhCCCCCCCCeEEEEecCCc
Q 039995 27 NTSEELNFVKDIAAATGV-VL------------DPVYSGKAAYGMLNDMAQNPKKWEGRKVLFVHTGGL 82 (118)
Q Consensus 27 ~t~e~~~~I~~~a~~eGI-~L------------DPVYTgKa~~gL~~~l~~~g~~~~g~rVLfiHTGGl 82 (118)
.+++..+.++...++.|| .+ ||---.+++..+.+.+.....+ |.+++.+|+|..
T Consensus 46 ~~~~~~~~~~~~~~~~gl~~~~~h~~~~~~l~s~~~~r~~~~~~~~~~i~~a~~l--Ga~~vv~h~g~~ 112 (270)
T 3aam_A 46 LSPAEVEAFRALREASGGLPAVIHASYLVNLGAEGELWEKSVASLADDLEKAALL--GVEYVVVHPGSG 112 (270)
T ss_dssp CCHHHHHHHHHHHHHTTCCCEEEECCTTCCTTCSSTHHHHHHHHHHHHHHHHHHH--TCCEEEECCCBS
T ss_pred CCHHHHHHHHHHHHHcCCceEEEecCcccCCCCCHHHHHHHHHHHHHHHHHHHHc--CCCEEEECCCCC
Confidence 457888899999999998 22 2222233444444333222123 567888999875
No 98
>1nns_A L-asparaginase II; amidrohydrolase, crystallographic comparison hydrolase; 1.95A {Escherichia coli} SCOP: c.88.1.1 PDB: 3eca_A 1ho3_A 1jaz_A 1ihd_A 1jja_A 4eca_A*
Probab=22.73 E-value=33 Score=27.23 Aligned_cols=14 Identities=21% Similarity=0.406 Sum_probs=11.7
Q ss_pred CeEEEEecCCcccc
Q 039995 72 RKVLFVHTGGLLGL 85 (118)
Q Consensus 72 ~rVLfiHTGGl~gl 85 (118)
+||+.|+|||..+.
T Consensus 2 ~~I~ii~TGGTIa~ 15 (326)
T 1nns_A 2 PNITILATGGTIAG 15 (326)
T ss_dssp CEEEEEEEESGGGC
T ss_pred CEEEEEeCCcccce
Confidence 47999999998764
No 99
>3ll5_A Gamma-glutamyl kinase related protein; alternate mevalonate pathway, isopentenyl phsophate kinase, beta-alpha sandwich fold; HET: MSE ADP IPE ATP IP8; 1.99A {Thermoplasma acidophilum} PDB: 3lkk_A*
Probab=22.70 E-value=70 Score=23.88 Aligned_cols=25 Identities=24% Similarity=0.446 Sum_probs=17.4
Q ss_pred HHHHHHHHHHhCCCCCCCCeEE-EEecCCccc
Q 039995 54 AAYGMLNDMAQNPKKWEGRKVL-FVHTGGLLG 84 (118)
Q Consensus 54 a~~gL~~~l~~~g~~~~g~rVL-fiHTGGl~g 84 (118)
.+..+.+++.+ |.+++ .+|.||.++
T Consensus 28 ~l~~l~~~i~~------G~~vv~lVhGGG~~~ 53 (249)
T 3ll5_A 28 AIRSIVKVLSG------IEDLVCVVHGGGSFG 53 (249)
T ss_dssp HHHHHHHHHHT------CTTEEEEEECCGGGT
T ss_pred HHHHHHHHHhc------CCceEEEEECccHHH
Confidence 45556555543 56899 999998775
No 100
>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}
Probab=22.69 E-value=39 Score=27.13 Aligned_cols=31 Identities=23% Similarity=0.217 Sum_probs=25.3
Q ss_pred CCcccCCHHHHHHHHHHHHHhCCc--cchhhhH
Q 039995 22 LGYAINTSEELNFVKDIAAATGVV--LDPVYSG 52 (118)
Q Consensus 22 ~GYG~~t~e~~~~I~~~a~~eGI~--LDPVYTg 52 (118)
+|.-.++++.++.|+++++++|++ +|-||||
T Consensus 234 ~G~~~~~~~~L~~l~~lc~~~gillI~DEv~~g 266 (476)
T 3i5t_A 234 GGVIIPPAGYHARFKAICEKHDILYISDEVVTG 266 (476)
T ss_dssp TTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTT
T ss_pred CCcccCCHHHHHHHHHHHHHcCCEEEEEecccC
Confidence 344478889999999999999975 4988875
No 101
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=22.56 E-value=48 Score=24.32 Aligned_cols=35 Identities=11% Similarity=-0.000 Sum_probs=28.2
Q ss_pred ccCCHHHHHHHHHHHH-HhCCccchhhhHHHHHHHH
Q 039995 25 AINTSEELNFVKDIAA-ATGVVLDPVYSGKAAYGML 59 (118)
Q Consensus 25 G~~t~e~~~~I~~~a~-~eGI~LDPVYTgKa~~gL~ 59 (118)
..+.+.-.+++..+.+ ..+|+.+|+=+||++.++.
T Consensus 112 ~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~ 147 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQAL 147 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHH
T ss_pred cCccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHH
Confidence 3678888888886554 4789999999999998865
No 102
>1o7j_A L-asparaginase; atomic resolution, hydrolase; 1.0A {Erwinia chrysanthemi} SCOP: c.88.1.1 PDB: 1hfj_A 1hfk_A* 1hg0_A 1hg1_A 1hfw_A* 1jsr_A* 1jsl_A 2gvn_A 1zcf_A 2hln_A* 2jk0_A
Probab=22.22 E-value=34 Score=27.14 Aligned_cols=14 Identities=21% Similarity=0.479 Sum_probs=12.0
Q ss_pred CeEEEEecCCcccc
Q 039995 72 RKVLFVHTGGLLGL 85 (118)
Q Consensus 72 ~rVLfiHTGGl~gl 85 (118)
+||+.|+|||..+.
T Consensus 5 ~~I~ii~TGGTIa~ 18 (327)
T 1o7j_A 5 PNIVILATGGTIAG 18 (327)
T ss_dssp CEEEEEEEESGGGC
T ss_pred CEEEEEECCccccc
Confidence 58999999998765
No 103
>2wlt_A L-asparaginase; hydrolase; 1.40A {Helicobacter pylori} PDB: 2wt4_A
Probab=21.87 E-value=35 Score=27.14 Aligned_cols=15 Identities=20% Similarity=0.326 Sum_probs=12.6
Q ss_pred CeEEEEecCCccccc
Q 039995 72 RKVLFVHTGGLLGLF 86 (118)
Q Consensus 72 ~rVLfiHTGGl~glf 86 (118)
+||+.|+|||..+.-
T Consensus 6 ~~I~vi~TGGTIa~~ 20 (332)
T 2wlt_A 6 PTIALLATGGTIAGS 20 (332)
T ss_dssp CEEEEEEEESGGGCB
T ss_pred CEEEEEECCcccccc
Confidence 589999999987753
No 104
>4a7w_A Uridylate kinase; transferase; HET: GTP; 1.80A {Helicobacter pylori} PDB: 4a7x_A*
Probab=21.73 E-value=98 Score=22.98 Aligned_cols=14 Identities=29% Similarity=0.181 Sum_probs=11.5
Q ss_pred CCeEEEEecCCccc
Q 039995 71 GRKVLFVHTGGLLG 84 (118)
Q Consensus 71 g~rVLfiHTGGl~g 84 (118)
|.+|+.+|.||.+.
T Consensus 46 G~~vvlV~gGG~~~ 59 (240)
T 4a7w_A 46 DIEVGIVIGGGNII 59 (240)
T ss_dssp TCEEEEEECCTTTC
T ss_pred CCcEEEEECCcHHH
Confidence 67899999998654
No 105
>3txv_A Probable tagatose 6-phosphate kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.80A {Sinorhizobium meliloti}
Probab=21.35 E-value=56 Score=27.68 Aligned_cols=21 Identities=5% Similarity=-0.203 Sum_probs=11.7
Q ss_pred CcccCCHHHHHHHHHHHHHhC
Q 039995 23 GYAINTSEELNFVKDIAAATG 43 (118)
Q Consensus 23 GYG~~t~e~~~~I~~~a~~eG 43 (118)
.++..+++.++++-+.|++.+
T Consensus 25 av~~~n~e~i~Ail~aAee~~ 45 (450)
T 3txv_A 25 SICSAHPLVIEAAMLRAHREK 45 (450)
T ss_dssp EECCCCHHHHHHHHHHHHHSC
T ss_pred EeCcCCHHHHHHHHHHHHHhC
Confidence 344446666666666666544
No 106
>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*
Probab=21.07 E-value=48 Score=26.39 Aligned_cols=31 Identities=23% Similarity=0.352 Sum_probs=24.8
Q ss_pred CCcccCCHHHHHHHHHHHHHhCCc--cchhhhH
Q 039995 22 LGYAINTSEELNFVKDIAAATGVV--LDPVYSG 52 (118)
Q Consensus 22 ~GYG~~t~e~~~~I~~~a~~eGI~--LDPVYTg 52 (118)
+|.-.++++.++.|++++++.|++ +|-||||
T Consensus 247 ~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g 279 (457)
T 3tfu_A 247 GGMRFHDPRYLHDLRDICRRYEVLLIFDEIATG 279 (457)
T ss_dssp TTCEECCTHHHHHHHHHHHHHTCEEEEECTTTT
T ss_pred CCcccCCHHHHHHHHHHHHHcCCEEEEEcCccC
Confidence 345556889999999999999975 4999884
No 107
>3nxk_A Cytoplasmic L-asparaginase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; 2.40A {Campylobacter jejuni subsp}
Probab=21.04 E-value=37 Score=27.24 Aligned_cols=14 Identities=21% Similarity=0.456 Sum_probs=12.0
Q ss_pred CeEEEEecCCcccc
Q 039995 72 RKVLFVHTGGLLGL 85 (118)
Q Consensus 72 ~rVLfiHTGGl~gl 85 (118)
+||+.|+|||..+.
T Consensus 9 ~~I~ii~TGGTIa~ 22 (334)
T 3nxk_A 9 SRIAILGTGGTIAG 22 (334)
T ss_dssp CEEEEEEEECGGGC
T ss_pred CEEEEEECCchhcc
Confidence 58999999998764
No 108
>1zow_A 3-oxoacyl-[acyl-carrier-protein] synthase III; FABH, fatty acid biosynthesis, transferase; 2.00A {Staphylococcus aureus subsp} PDB: 3il7_A
Probab=20.96 E-value=2.3e+02 Score=20.91 Aligned_cols=44 Identities=16% Similarity=0.154 Sum_probs=27.8
Q ss_pred HHHHhCCccchhhhHH----------HHHHHHHHHHhCCCCCCCCeEEEEecCCc
Q 039995 38 IAAATGVVLDPVYSGK----------AAYGMLNDMAQNPKKWEGRKVLFVHTGGL 82 (118)
Q Consensus 38 ~a~~eGI~LDPVYTgK----------a~~gL~~~l~~~g~~~~g~rVLfiHTGGl 82 (118)
+.+.-|+..|.+++-| .+..|.+ +.+++++.+|.+||++=.|+-
T Consensus 248 ~~~~lg~~~~~~~~~~~~~Gh~~~as~~~~L~~-~~~~~~~~~g~~vl~~~~G~G 301 (313)
T 1zow_A 248 ARERLGISKDKMSVSVNKYGNTSAASIPLSIDQ-ELKNGKLKDDDTIVLVGFGGG 301 (313)
T ss_dssp HHHHHTCCGGGBCCCHHHHCBCGGGHHHHHHHH-HHHTTCCCTTCEEEEEEEETT
T ss_pred HHHHhCCCHHHHHHhHhhhCchHHHHHHHHHHH-HHHcCCCCCCCEEEEEEEchh
Confidence 3445577776666434 4455554 445567778888888877753
No 109
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=20.74 E-value=93 Score=21.04 Aligned_cols=36 Identities=22% Similarity=0.307 Sum_probs=20.6
Q ss_pred CccchhhhH--HHHHHHHHHHHhCCCCCCCCeEEEEec
Q 039995 44 VVLDPVYSG--KAAYGMLNDMAQNPKKWEGRKVLFVHT 79 (118)
Q Consensus 44 I~LDPVYTg--Ka~~gL~~~l~~~g~~~~g~rVLfiHT 79 (118)
|..||.|.. .....++..+.+.+.+.+|..+++-|.
T Consensus 117 i~~~~p~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~ 154 (189)
T 3p9n_A 117 VLADPPYNVDSADVDAILAALGTNGWTREGTVAVVERA 154 (189)
T ss_dssp EEECCCTTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEE
T ss_pred EEECCCCCcchhhHHHHHHHHHhcCccCCCeEEEEEec
Confidence 456666764 445555555555445666766666554
No 110
>1ub0_A THID, phosphomethylpyrimidine kinase; thiamin biosynthesis, ribokinase family, phosphorylati structural genomics; 2.05A {Thermus thermophilus} SCOP: c.72.1.2
Probab=20.55 E-value=55 Score=23.58 Aligned_cols=30 Identities=23% Similarity=0.393 Sum_probs=20.6
Q ss_pred CCcccCCHHHHHHHHHHHHHhC---CccchhhhH
Q 039995 22 LGYAINTSEELNFVKDIAAATG---VVLDPVYSG 52 (118)
Q Consensus 22 ~GYG~~t~e~~~~I~~~a~~eG---I~LDPVYTg 52 (118)
-|+ ..+++..+.+.+.+++.| +.+||++..
T Consensus 76 ~G~-l~~~~~~~~~~~~~~~~~~~~vv~Dp~~~~ 108 (258)
T 1ub0_A 76 TGA-LGDAAIVEAVAEAVRRFGVRPLVVDPVMVA 108 (258)
T ss_dssp ECC-CCSHHHHHHHHHHHHHTTCCSEEECCCC--
T ss_pred ECC-cCCHHHHHHHHHHHHhCCCCcEEECCeeec
Confidence 345 447777777777777766 789999843
No 111
>2ba3_A NIKA; dimer, bacterial conjugation, relaxase, DNA binding, ribbon- helix-helix, DNA binding protein; NMR {Plasmid R64}
Probab=20.25 E-value=67 Score=18.13 Aligned_cols=20 Identities=15% Similarity=0.152 Sum_probs=17.6
Q ss_pred cCCHHHHHHHHHHHHHhCCc
Q 039995 26 INTSEELNFVKDIAAATGVV 45 (118)
Q Consensus 26 ~~t~e~~~~I~~~a~~eGI~ 45 (118)
+.|++..+.|+..|+..|+.
T Consensus 21 Rlt~eE~~~l~~~A~~~g~s 40 (51)
T 2ba3_A 21 RFSPVEDETIRKKAEDSGLT 40 (51)
T ss_dssp EECHHHHHHHHHHHHHHTCC
T ss_pred EECHHHHHHHHHHHHHhCCC
Confidence 35899999999999999975
Done!