Query 039996
Match_columns 241
No_of_seqs 106 out of 257
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 06:00:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039996.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039996hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qd1_A Formiminotransferase-cy 100.0 3.5E-93 1.2E-97 655.2 23.4 224 4-236 1-283 (325)
2 1tt9_A Formimidoyltransferase- 100.0 5.9E-88 2E-92 655.3 24.8 219 5-232 3-279 (541)
3 4h3d_A 3-dehydroquinate dehydr 69.3 14 0.00048 32.2 7.5 122 103-237 23-165 (258)
4 3o1n_A 3-dehydroquinate dehydr 56.5 42 0.0015 29.5 8.2 124 102-237 42-185 (276)
5 1b4u_B LIGA, LIGB, protocatech 46.4 24 0.00082 31.2 5.0 69 152-220 99-190 (302)
6 2bx2_L Ribonuclease E, RNAse E 40.5 8.8 0.0003 37.3 1.2 54 117-170 282-349 (517)
7 1sfl_A 3-dehydroquinate dehydr 39.3 1E+02 0.0034 26.2 7.7 123 103-238 7-152 (238)
8 2yr1_A 3-dehydroquinate dehydr 32.7 1.4E+02 0.0046 25.8 7.5 46 191-237 117-165 (257)
9 3iix_A Biotin synthetase, puta 26.3 3E+02 0.01 23.4 8.9 116 109-237 84-217 (348)
10 2pw6_A Uncharacterized protein 24.0 93 0.0032 27.1 4.9 65 150-220 92-172 (271)
11 2i0f_A 6,7-dimethyl-8-ribityll 23.9 2.9E+02 0.01 22.4 8.1 71 156-234 60-130 (157)
12 3txv_A Probable tagatose 6-pho 22.9 1.2E+02 0.0041 29.0 5.7 75 151-238 29-117 (450)
13 3no5_A Uncharacterized protein 22.8 1.2E+02 0.0043 26.7 5.5 64 1-80 2-76 (275)
14 2qnd_A FMR1 protein; KH domain 22.3 37 0.0013 26.8 1.8 39 16-58 83-127 (144)
15 3kp1_A D-ornithine aminomutase 22.1 1E+02 0.0036 31.3 5.3 68 141-215 479-546 (763)
16 2nqt_A N-acetyl-gamma-glutamyl 21.8 1.4E+02 0.0049 26.9 5.8 24 68-91 322-345 (352)
17 4exr_A Putative lipoprotein; Y 20.9 45 0.0015 27.4 2.1 35 23-57 36-70 (174)
18 1oi2_A Hypothetical protein YC 20.0 2E+02 0.0068 26.8 6.4 127 91-222 154-326 (366)
No 1
>1qd1_A Formiminotransferase-cyclodeaminase; functional dimer, alpha-beta-BETA-alpha sandwich, electrosta charged substrate tunnel; HET: FON; 1.70A {Sus scrofa} SCOP: d.58.34.1 d.58.34.1
Probab=100.00 E-value=3.5e-93 Score=655.24 Aligned_cols=224 Identities=23% Similarity=0.325 Sum_probs=216.8
Q ss_pred cceeeEecccccCCCHHHHHHHHHHHhhCCCcEEEecCCCCCCCcceEEEeecCCCCCCCCcccHHHHHHHHHHHHHHcC
Q 039996 4 LMLTCCKVYISESQNKAALESIEQAARLFSAAIIVNKFEDVTYNRVGYTVVSKLAPTLSSDSCPLKSTVFAMIKAAFENI 83 (241)
Q Consensus 4 ~~lveCvpN~SEGR~~~~ie~I~~a~~~~~gv~lld~~~D~dyNRsv~T~vg~~~~~~~~~~~~v~~aa~~~~~~A~~~I 83 (241)
++|+|||||||||||+++||+|++++++++||+|||+|+|+|||||||||+|+|+ +|.+|+|+|+++|+++|
T Consensus 1 ~klveCvpNfSEGR~~~vIe~I~~a~~~~~gv~LLd~~~D~~~NRsv~T~vg~pe--------~v~eaa~~~~~~A~elI 72 (325)
T 1qd1_A 1 SQLVECVPNFSEGKNQEVIDAISRAVAQTPGCVLLDVDSGPSTNRTVYTFVGRPE--------DVVEGALNAARAAYQLI 72 (325)
T ss_dssp CCEEEECCEESCSSCHHHHHHHHHHHHTSTTCEEEEEEEETTTTEEEEEEEECHH--------HHHHHHHHHHHHHHHHC
T ss_pred CceEEEeeeecccCCHHHHHHHHHHHhcCCCcEEEeCCCCCCCCCceEEEccChH--------HHHHHHHHHHHHHHHhc
Confidence 4799999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred CCCCCccCCCCCccccceeeeeCCCCCHHHHHHHHHHHHHhhccCCC---------------------------------
Q 039996 84 EPGMHSGSHPRLGVVDHICFHPLASAPLDQVAGIAKSVVGDIGSGLQ--------------------------------- 130 (241)
Q Consensus 84 Dm~~H~G~HPR~GavDvipf~Pl~~~t~~ec~~lA~~~a~~ig~~l~--------------------------------- 130 (241)
||++|+|+|||||||||||||||+++|||||+++|+++|++||++|+
T Consensus 73 Dm~~H~G~HPRmGavDviPf~Pl~~~tmeec~~lA~~~g~~i~~~l~VPVyLYg~Aa~~p~rr~L~~iRrG~yegl~e~~ 152 (325)
T 1qd1_A 73 DMSRHHGEHPRMGALDVCPFIPVRGVTMDECVRCAQAFGQRLAEELGVPVYLYGEAARTAGRQSLPALRAGEYEALPEKL 152 (325)
T ss_dssp CGGGCCCSSCCSBSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHTCCEEEEETTCSSGGGSCHHHHHTTHHHHHHHHT
T ss_pred cccccCCCCCCCCccceeeeeeCCCCCHHHHHHHHHHHHHHHhhhcCCcEEeehhhcCCCccCcHHHhcccccccchhhc
Confidence 99999999999999999999999999999999999999999999888
Q ss_pred ------------------CeEEeccCCCeeeeeeeccCCCHHHHHHHHHHhhccC------CCcccceEEeeEec-CCeE
Q 039996 131 ------------------GVIVIGSTRWVDNYNIPVFSTNIAAVRRIAKQVSERG------GGLASVQAMVLIRG-EDIT 185 (241)
Q Consensus 131 ------------------Gat~vGAr~~liayNV~L~t~dl~~Ar~IA~~vR~~~------GGL~~VqAmgl~~~-~g~~ 185 (241)
|+|+||||+||+|||||| |+|+++||+||++||++| |||++||||||+|+ +|++
T Consensus 153 ~~~~~~PD~Gp~~~~p~~Gat~vGAr~~liayNVnL-t~~~~~A~~IA~~vR~~gr~~~~pGGL~~VqAmg~~~~e~~~~ 231 (325)
T 1qd1_A 153 KQAEWAPDFGPSAFVPSWGATVAGARKFLLAFNINL-LSTREQAHRIALDLREQGRGKDQPGRLKKVQAIGWYLDEKNLA 231 (325)
T ss_dssp TSGGGCCSBSCCCCCTTTBCEEEEECSCCEEEEEEE-SSCHHHHHHHHHHHSTTC------CCSTTEEEEEEEETTTTEE
T ss_pred cCCCCCCCCCCCCCCCCcceEEEecCCceeeEeeec-cCcHHHHHHHHHHhhhcCCCCCCCCCccceEEeeEEecCCCeE
Confidence 999999999999999999 777999999999999999 99999999999995 8999
Q ss_pred EEEeecCCCCCCchHHHHHHHHHHHHhcCCeecceeeecCCHHHH-HHHHHH
Q 039996 186 EVECNLLKPSKIGGDKVQVEVDELAAVEGMAVGKGYYTDLSQEEI-IERYMK 236 (241)
Q Consensus 186 qVs~NL~d~~~t~~~~V~e~V~~~A~~~Gv~V~g~y~~g~~pe~i-le~~~~ 236 (241)
||||||+||++||+|+||++|+++|++||++|+|||++||+|.++ ++.+++
T Consensus 232 qVS~Nl~d~~~t~~~~V~e~V~~~A~~~Gv~V~gse~vGl~P~~al~~~a~y 283 (325)
T 1qd1_A 232 QVSTNLLDFEVTGLHTVFEETCREAQELSLPVVGSQLVGLVPLKALLDAAAF 283 (325)
T ss_dssp EEEEEESCTTTSCHHHHHHHHHHHHHHTTCCEEEEEEESCBCHHHHHHHHHH
T ss_pred EEEecccCCccCCHHHHHHHHHHHHHHcCCceeceEEeCcchHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999988 444433
No 2
>1tt9_A Formimidoyltransferase-cyclodeaminase (formiminotransferase- cyclodeaminase) (FTCD)...; hepatitis autoantigen, intermediate channeling; 3.42A {Rattus norvegicus} PDB: 2pfd_A
Probab=100.00 E-value=5.9e-88 Score=655.26 Aligned_cols=219 Identities=23% Similarity=0.311 Sum_probs=215.1
Q ss_pred ceeeEecccccCCCHHHHHHHHHHHhhCCCcEEEecCCCCCCCcceEEEeecCCCCCCCCcccHHHHHHHHHHHHHHcCC
Q 039996 5 MLTCCKVYISESQNKAALESIEQAARLFSAAIIVNKFEDVTYNRVGYTVVSKLAPTLSSDSCPLKSTVFAMIKAAFENIE 84 (241)
Q Consensus 5 ~lveCvpN~SEGR~~~~ie~I~~a~~~~~gv~lld~~~D~dyNRsv~T~vg~~~~~~~~~~~~v~~aa~~~~~~A~~~ID 84 (241)
+|+|||||||||||+++||+|+++++++|||+|||+|+|+|||||||||+|+|+ +|.+|+|+++++|+++||
T Consensus 3 ~lvecvpn~SEgR~~~~i~~I~~a~~~~~gv~lld~~~d~~~NRtv~T~vg~p~--------~v~~a~~~~~~~A~~~ID 74 (541)
T 1tt9_A 3 QLVECVPNFSEGNNQEVIDAISQAISQTPGCVLLDVDAGPSTNRTVYTFVGQPE--------CVVEGALSAARTASQLID 74 (541)
T ss_pred ceEEEeeeecccCCHHHHHHHHHHHhcCCCcEEEeCCCCCCCCCCeeEEcCCcH--------HHHHHHHHHHHHHHHhcC
Confidence 799999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred CCCCccCCCCCccccceeeeeCCCCCHHHHHHHHHHHHHhhccCCC----------------------------------
Q 039996 85 PGMHSGSHPRLGVVDHICFHPLASAPLDQVAGIAKSVVGDIGSGLQ---------------------------------- 130 (241)
Q Consensus 85 m~~H~G~HPR~GavDvipf~Pl~~~t~~ec~~lA~~~a~~ig~~l~---------------------------------- 130 (241)
|++|+|+|||||||||||||||+++|||||+++|+++|++||++|+
T Consensus 75 m~~H~G~HPR~GavDvipf~Pl~~~t~eec~~~A~~~~~~i~~~l~vPvylYg~Aa~~p~r~~L~~iRrG~ye~~~~~~~ 154 (541)
T 1tt9_A 75 MRKHKGEHPRMGALDVCPFIPVRGVSMDECVLCAKAFGQRLAEELNVPVYLYGEAAQMPSRQTLPAIRAGEYEALPEKLK 154 (541)
T ss_pred ccccCCCCCCCCCcCccccccCCCCCHHHHHHHHHHHHHHHhhhcCCcEEeeHhhcCCCCcCcHHHhhccccccchhhcc
Confidence 9999999999999999999999999999999999999999999888
Q ss_pred -----------------CeEEeccCCCeeeeeeeccCCCHHHHHHHHHHhhccC------CCcccceEEeeEec-CCeEE
Q 039996 131 -----------------GVIVIGSTRWVDNYNIPVFSTNIAAVRRIAKQVSERG------GGLASVQAMVLIRG-EDITE 186 (241)
Q Consensus 131 -----------------Gat~vGAr~~liayNV~L~t~dl~~Ar~IA~~vR~~~------GGL~~VqAmgl~~~-~g~~q 186 (241)
|+|+||||+||+|||||| |+|+++||+||++||++| |||++||||||+|+ +|++|
T Consensus 155 ~~~~~PD~Gp~~~~~~~G~t~vGAr~~liayNV~L-t~~~~~a~~IA~~vr~~gr~~~~~Ggl~~Vqamg~~~~~~~~~q 233 (541)
T 1tt9_A 155 QAEWVPDFGPSSFVPSWGATVTGARKFLIAFNINL-LSTKEQAHRIALNLREQGRGKDQPGRLKKVQGIGWYLEEKNLAQ 233 (541)
T ss_pred CCCCCCCCCCCCCCCCCceEEEecCcceeeeeeec-cccHHHHHHHHHHhhhcCCCCCCCCCccceeEeeEeecCCCeEE
Confidence 999999999999999999 889999999999999999 99999999999995 89999
Q ss_pred EEeecCCCCCCchHHHHHHHHHHHHhcCCeecceeeecCCHHHHHH
Q 039996 187 VECNLLKPSKIGGDKVQVEVDELAAVEGMAVGKGYYTDLSQEEIIE 232 (241)
Q Consensus 187 Vs~NL~d~~~t~~~~V~e~V~~~A~~~Gv~V~g~y~~g~~pe~ile 232 (241)
|||||+||++||+|+||++|+++|++|||+|+|||++||+|.++|-
T Consensus 234 Vs~Nl~d~~~t~~~~v~e~v~~~A~~~gv~v~gse~vGl~P~~al~ 279 (541)
T 1tt9_A 234 VSTNLLDFEVTALHTVYEEARREAQELNLPVVGSQLVGLVPLKALL 279 (541)
T ss_pred EEecccCCccCCHHHHHHHHHHHHHHcCCccccceEeccchHHHHH
Confidence 9999999999999999999999999999999999999999997663
No 3
>4h3d_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, aldolase class I; HET: PGE SHL; 1.95A {Clostridium difficile} PDB: 3js3_A*
Probab=69.29 E-value=14 Score=32.17 Aligned_cols=122 Identities=15% Similarity=0.145 Sum_probs=70.8
Q ss_pred eeeCCCCCHHHHHHHHHHHHHhhccCCCCeEEeccCCCeeeeeeec--cCCCHHHHHHHHHHhhccCCCcccceEEeeEe
Q 039996 103 FHPLASAPLDQVAGIAKSVVGDIGSGLQGVIVIGSTRWVDNYNIPV--FSTNIAAVRRIAKQVSERGGGLASVQAMVLIR 180 (241)
Q Consensus 103 f~Pl~~~t~~ec~~lA~~~a~~ig~~l~Gat~vGAr~~liayNV~L--~t~dl~~Ar~IA~~vR~~~GGL~~VqAmgl~~ 180 (241)
++||.+.|.+|..+-|+.+... |+= ++=+=+-+ +..|++......+.+|..-+++|-+=..=-..
T Consensus 23 cvpl~~~t~~e~l~~a~~~~~~------~aD-------~vElR~D~l~~~~~~~~v~~~l~~lr~~~~~lPiI~T~Rt~~ 89 (258)
T 4h3d_A 23 CVPIIGKNKKDIIKEAKELKDA------CLD-------IIEWRVDFFENVENIKEVKEVLYELRSYIHDIPLLFTFRSVV 89 (258)
T ss_dssp EEEECCSSHHHHHHHHHHHTTS------SCS-------EEEEEGGGCTTTTCHHHHHHHHHHHHHHCTTSCEEEECCCGG
T ss_pred EEEeCCCCHHHHHHHHHHHhhc------CCC-------EEEEeeccccccCCHHHHHHHHHHHHHhcCCCCEEEEEechh
Confidence 5899999999998877765331 221 22222222 12467777777788877555544221110000
Q ss_pred cCCeEE------------E----EeecCCCCCCchHHHHHHHHHHHHhcCCeecceeee-cCCH--HHHHHHHHHH
Q 039996 181 GEDITE------------V----ECNLLKPSKIGGDKVQVEVDELAAVEGMAVGKGYYT-DLSQ--EEIIERYMKL 237 (241)
Q Consensus 181 ~~g~~q------------V----s~NL~d~~~t~~~~V~e~V~~~A~~~Gv~V~g~y~~-g~~p--e~ile~~~~~ 237 (241)
+.|..+ + .+.+.|.+..-..+.+..+...|++.|+.|+.||.. .-|| +++.+.+.+.
T Consensus 90 EGG~~~~~~~~~~~ll~~~~~~~~~d~iDvEl~~~~~~~~~l~~~a~~~~~kiI~S~Hdf~~TP~~~el~~~~~~~ 165 (258)
T 4h3d_A 90 EGGEKLISRDYYTTLNKEISNTGLVDLIDVELFMGDEVIDEVVNFAHKKEVKVIISNHDFNKTPKKEEIVSRLCRM 165 (258)
T ss_dssp GTCSCCCCHHHHHHHHHHHHHTTCCSEEEEEGGGCHHHHHHHHHHHHHTTCEEEEEEEESSCCCCHHHHHHHHHHH
T ss_pred hCCCCCCCHHHHHHHHHHHHhcCCchhhHHhhhccHHHHHHHHHHHHhCCCEEEEEEecCCCCCCHHHHHHHHHHH
Confidence 111100 0 134556666666778888888899999999999862 3344 5666655443
No 4
>3o1n_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, lyase; 1.03A {Salmonella enterica subsp} PDB: 3s42_A 3l2i_A* 3lb0_A 4guf_A 4gug_A* 4guh_A* 3nnt_A* 4guj_A* 3m7w_A 3oex_A 4gfs_A* 4gui_A* 1gqn_A 1l9w_A* 1qfe_A*
Probab=56.47 E-value=42 Score=29.50 Aligned_cols=124 Identities=14% Similarity=0.063 Sum_probs=68.2
Q ss_pred eeeeCCCCCHHHHHHHHHHHHHhhccCCCCeEEeccC-CCeeeeeeeccCCCHHHHHHHHHHhhccCCCcccceEEeeEe
Q 039996 102 CFHPLASAPLDQVAGIAKSVVGDIGSGLQGVIVIGST-RWVDNYNIPVFSTNIAAVRRIAKQVSERGGGLASVQAMVLIR 180 (241)
Q Consensus 102 pf~Pl~~~t~~ec~~lA~~~a~~ig~~l~Gat~vGAr-~~liayNV~L~t~dl~~Ar~IA~~vR~~~GGL~~VqAmgl~~ 180 (241)
=|+||.+-|.+|..+.++.+... |+=+|=-| .|+- +..+.+.-.+..+.+|..-+++|-+=..=-..
T Consensus 42 i~v~l~~~~~~e~~~~~~~~~~~------gaD~VElRvD~l~------~~~~~~~v~~~l~~lr~~~~~~PiI~T~Rt~~ 109 (276)
T 3o1n_A 42 IIVSLMGKTITDVKSEALAYREA------DFDILEWRVDHFA------NVTTAESVLEAAGAIREIITDKPLLFTFRSAK 109 (276)
T ss_dssp EEEEECCSSHHHHHHHHHHHTTS------CCSEEEEEGGGCT------TTTCHHHHHHHHHHHHHHCCSSCEEEECCBGG
T ss_pred EEEEeCCCCHHHHHHHHHHHhhC------CCCEEEEEecccc------ccCcHHHHHHHHHHHHHhcCCCCEEEEEEEhh
Confidence 48899999999998877765421 21112111 1111 11233444455567776655555221110000
Q ss_pred cCCe---------------EEEE-eecCCCCCCchHHHHHHHHHHHHhcCCeecceeee-cCC--HHHHHHHHHHH
Q 039996 181 GEDI---------------TEVE-CNLLKPSKIGGDKVQVEVDELAAVEGMAVGKGYYT-DLS--QEEIIERYMKL 237 (241)
Q Consensus 181 ~~g~---------------~qVs-~NL~d~~~t~~~~V~e~V~~~A~~~Gv~V~g~y~~-g~~--pe~ile~~~~~ 237 (241)
+.|. ++.- +.+.|.+.......+..+.+.|++.|+.|+.||.. +-| .+++.+.+.++
T Consensus 110 eGG~~~~~~~~~~~ll~~~l~~g~~dyIDvEl~~~~~~~~~l~~~a~~~~~kvI~S~Hdf~~tP~~~el~~~~~~~ 185 (276)
T 3o1n_A 110 EGGEQALTTGQYIDLNRAAVDSGLVDMIDLELFTGDDEVKATVGYAHQHNVAVIMSNHDFHKTPAAEEIVQRLRKM 185 (276)
T ss_dssp GTCSBCCCHHHHHHHHHHHHHHTCCSEEEEEGGGCHHHHHHHHHHHHHTTCEEEEEEEESSCCCCHHHHHHHHHHH
T ss_pred hCCCCCCCHHHHHHHHHHHHhcCCCCEEEEECcCCHHHHHHHHHHHHhCCCEEEEEeecCCCCcCHHHHHHHHHHH
Confidence 0111 1111 34555666666778888888899999999999862 223 45777766654
No 5
>1b4u_B LIGA, LIGB, protocatechuate 4,5-dioxygenase; extradiol type dioxygenase, non-heme iron protein; HET: DHB; 2.20A {Sphingomonas paucimobilis} SCOP: c.56.6.1 PDB: 1bou_B
Probab=46.44 E-value=24 Score=31.25 Aligned_cols=69 Identities=12% Similarity=0.062 Sum_probs=44.3
Q ss_pred CHHHHHHHHHHhhccCCCcccceEEeeEec-----------CC-----eEEEEeecCCCCCCchHHHHHHHHHHH-----
Q 039996 152 NIAAVRRIAKQVSERGGGLASVQAMVLIRG-----------ED-----ITEVECNLLKPSKIGGDKVQVEVDELA----- 210 (241)
Q Consensus 152 dl~~Ar~IA~~vR~~~GGL~~VqAmgl~~~-----------~g-----~~qVs~NL~d~~~t~~~~V~e~V~~~A----- 210 (241)
|-++|++|++.+...+=-......+++.|+ .+ .+|||+|...+-.-++.+.++.=+.++
T Consensus 99 ~peLA~~i~~~l~~~g~~~~~~~~~~lDHG~~vpL~~l~p~~d~~~ipVVpisv~~~~~p~~~~~~~~~lG~aL~~~~~~ 178 (302)
T 1b4u_B 99 HPDLAWHIAQSLILDEFDMTIMNQMDVDHGCTVPLSMIFGEPEEWPCKVIPFPVNVVTYPPPSGKRCFALGDSIRAAVES 178 (302)
T ss_dssp CHHHHHHHHHHHHHTTCCCEEESSCCBCHHHHHHHHHHHCSCSSCSSEEEEEEBCCSSSCCCCHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHhcCCCeeccCCcCCCceeeehHHHhcCcccCCcCcEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 479999999998875422222233566653 12 699999988766555665555544444
Q ss_pred --HhcCCeecce
Q 039996 211 --AVEGMAVGKG 220 (241)
Q Consensus 211 --~~~Gv~V~g~ 220 (241)
...||-|.+|
T Consensus 179 ~~~d~~VlIIgS 190 (302)
T 1b4u_B 179 FPEDLNVHVWGT 190 (302)
T ss_dssp SSSCCEEEEEEE
T ss_pred cCCCCCEEEEEe
Confidence 2466888886
No 6
>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonu nuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A
Probab=40.50 E-value=8.8 Score=37.31 Aligned_cols=54 Identities=33% Similarity=0.410 Sum_probs=42.4
Q ss_pred HHHHHHHhhccCCCCeEEeccCCCeeeeeeeccC-------------CCHHHHHHHHHHhhccC-CCc
Q 039996 117 IAKSVVGDIGSGLQGVIVIGSTRWVDNYNIPVFS-------------TNIAAVRRIAKQVSERG-GGL 170 (241)
Q Consensus 117 lA~~~a~~ig~~l~Gat~vGAr~~liayNV~L~t-------------~dl~~Ar~IA~~vR~~~-GGL 170 (241)
+.+.+.++++-.-+|-.+|=-+.-|++.-||-.. ++++.|+.|||.+|=|+ ||+
T Consensus 282 i~~al~~~V~L~sGGylvIe~TEALt~IDVNsG~~~~~~~~eet~~~tNleAA~EIaRQLRLRnlgGi 349 (517)
T 2bx2_L 282 IESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGL 349 (517)
T ss_dssp HHHTTCSEEECTTSCEEEEEECSSCEEEEEECCC----CCHHHHHHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHhCCeEEcCCCeEEEEecCcceEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCcE
Confidence 4555666776555688999999889998888722 45999999999999998 664
No 7
>1sfl_A 3-dehydroquinate dehydratase; 3-dehydroquinase, enzyme turnover, shikimate pathway, lyase; 1.90A {Staphylococcus aureus subsp} SCOP: c.1.10.1 PDB: 1sfj_A*
Probab=39.33 E-value=1e+02 Score=26.24 Aligned_cols=123 Identities=6% Similarity=0.004 Sum_probs=61.7
Q ss_pred eeeCCC-CCHHHHHHHHHHHHHhhccCCCCeEEeccC-CCeeeeeeeccCCCHHHHHHHHHHhhccCCCcccceEEeeEe
Q 039996 103 FHPLAS-APLDQVAGIAKSVVGDIGSGLQGVIVIGST-RWVDNYNIPVFSTNIAAVRRIAKQVSERGGGLASVQAMVLIR 180 (241)
Q Consensus 103 f~Pl~~-~t~~ec~~lA~~~a~~ig~~l~Gat~vGAr-~~liayNV~L~t~dl~~Ar~IA~~vR~~~GGL~~VqAmgl~~ 180 (241)
++||.+ .|.+|..+-++.+.+. |+=+|=-| .|+-. .|.+...+..+.+|..-|.+|-+=..=-..
T Consensus 7 cvpi~~~~~~~e~~~~~~~~~~~------~~D~vElRvD~l~~-------~~~~~v~~~~~~lr~~~~~~PiI~T~R~~~ 73 (238)
T 1sfl_A 7 VATITPQLSIEETLIQKINHRID------AIDVLELRIDQFEN-------VTVDQVAEMITKLKVMQDSFKLLVTYRTKL 73 (238)
T ss_dssp EEEECCCC---CHHHHHHHHTTT------TCSEEEEECTTSTT-------CCHHHHHHHHHHHC---CCSEEEEECCBGG
T ss_pred EEEecCCCCHHHHHHHHHHhhhc------CCCEEEEEeccccc-------CCHHHHHHHHHHHHHhccCCCEEEEeeccc
Confidence 688988 9999888766654331 21122222 22211 244545556667777655555321110000
Q ss_pred cCCe---------------EEE-EeecCCCCCCc--hHHHHHHHHHHHHhcCCeecceeee-cCCH--HHHHHHHHHHh
Q 039996 181 GEDI---------------TEV-ECNLLKPSKIG--GDKVQVEVDELAAVEGMAVGKGYYT-DLSQ--EEIIERYMKLN 238 (241)
Q Consensus 181 ~~g~---------------~qV-s~NL~d~~~t~--~~~V~e~V~~~A~~~Gv~V~g~y~~-g~~p--e~ile~~~~~~ 238 (241)
+.|. ++- .+.+.|.+... .......+-+.|++.|+.|+.||.. +-|| +++.+.+.+..
T Consensus 74 eGG~~~~~~~~~~~ll~~~~~~~~~d~iDvEl~~~~~~~~~~~l~~~~~~~~~kvI~S~Hdf~~tp~~~el~~~~~~~~ 152 (238)
T 1sfl_A 74 QGGYGQFTNDSYLNLISDLANINGIDMIDIEWQADIDIEKHQRIITHLQQYNKEVIISHHNFESTPPLDELQFIFFKMQ 152 (238)
T ss_dssp GTSCBCCCHHHHHHHHHHGGGCTTCCEEEEECCTTSCHHHHHHHHHHHHHTTCEEEEEEEESSCCCCHHHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHHhCCCCEEEEEccCCCChHHHHHHHHHHHhcCCEEEEEecCCCCCcCHHHHHHHHHHHH
Confidence 0010 011 12344444444 5666667777888999999999873 4445 77877766543
No 8
>2yr1_A 3-dehydroquinate dehydratase; amino acid biosynthesis, 3-dehydroquinase, structural genomi NPPSFA; 2.00A {Geobacillus kaustophilus}
Probab=32.70 E-value=1.4e+02 Score=25.80 Aligned_cols=46 Identities=11% Similarity=0.040 Sum_probs=30.0
Q ss_pred cCCCCCCchHHHHHHHHHHHHhcCCeecceeee-cCCH--HHHHHHHHHH
Q 039996 191 LLKPSKIGGDKVQVEVDELAAVEGMAVGKGYYT-DLSQ--EEIIERYMKL 237 (241)
Q Consensus 191 L~d~~~t~~~~V~e~V~~~A~~~Gv~V~g~y~~-g~~p--e~ile~~~~~ 237 (241)
+.|.+..-.. .+..+-+.|.+.|+.|+.||.. +-|| +++.+.+.+.
T Consensus 117 ~iDvEl~~~~-~~~~l~~~~~~~~~kvI~S~Hdf~~tP~~~el~~~~~~~ 165 (257)
T 2yr1_A 117 LVDYELAYGE-RIADVRRMTEECSVWLVVSRHYFDGTPRKETLLADMRQA 165 (257)
T ss_dssp EEEEEGGGTT-HHHHHHHHHHHTTCEEEEEEEESSCCCCHHHHHHHHHHH
T ss_pred EEEEECCCCh-hHHHHHHHHHhCCCEEEEEecCCCCCcCHHHHHHHHHHH
Confidence 4444444334 5556667788999999999873 3444 7777766554
No 9
>3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A*
Probab=26.30 E-value=3e+02 Score=23.43 Aligned_cols=116 Identities=10% Similarity=0.090 Sum_probs=65.1
Q ss_pred CCHHHHHHHHHHHHHhhccCCCCeEEeccCCCeeeeeeeccCCCHHHHHHHHHHhhccC------CCcccceEEeeEecC
Q 039996 109 APLDQVAGIAKSVVGDIGSGLQGVIVIGSTRWVDNYNIPVFSTNIAAVRRIAKQVSERG------GGLASVQAMVLIRGE 182 (241)
Q Consensus 109 ~t~~ec~~lA~~~a~~ig~~l~Gat~vGAr~~liayNV~L~t~dl~~Ar~IA~~vR~~~------GGL~~VqAmgl~~~~ 182 (241)
.|.+|..+.++.+.+ .| ...+...|-.+++. +.+.-.+|.+.+++.+ +|+..-+-+-...+.
T Consensus 84 ls~eei~~~i~~~~~-~g--~~~i~~~gGe~p~~---------~~~~~~~li~~i~~~~~~i~~s~g~l~~e~l~~L~~a 151 (348)
T 3iix_A 84 MTPEEIVERARLAVQ-FG--AKTIVLQSGEDPYX---------MPDVISDIVKEIKKMGVAVTLSLGEWPREYYEKWKEA 151 (348)
T ss_dssp CCHHHHHHHHHHHHH-TT--CSEEEEEESCCGGG---------TTHHHHHHHHHHHTTSCEEEEECCCCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH-CC--CCEEEEEeCCCCCc---------cHHHHHHHHHHHHhcCceEEEecCCCCHHHHHHHHHh
Confidence 578888888877544 22 33566666653332 1244555666666651 111111111111111
Q ss_pred CeEEEEeecCCCC---------CCchHHHHHHHHHHHHhcCCeecceeeecC---CHHHHHHHHHHH
Q 039996 183 DITEVECNLLKPS---------KIGGDKVQVEVDELAAVEGMAVGKGYYTDL---SQEEIIERYMKL 237 (241)
Q Consensus 183 g~~qVs~NL~d~~---------~t~~~~V~e~V~~~A~~~Gv~V~g~y~~g~---~pe~ile~~~~~ 237 (241)
|.-.+.+++..++ ..+..++.+.++. +.+.|+.+.-+.+.|+ +++++.+....+
T Consensus 152 g~~~v~i~let~~~~~~~~i~~~~~~~~~~~~i~~-~~~~Gi~v~~~~i~G~p~et~e~~~~~~~~l 217 (348)
T 3iix_A 152 GADRYLLRHETANPVLHRKLRPDTSFENRLNCLLT-LKELGYETGAGSMVGLPGQTIDDLVDDLLFL 217 (348)
T ss_dssp TCCEEECCCBCSCHHHHHHHSTTSCHHHHHHHHHH-HHHTTCEEEECBEESCTTCCHHHHHHHHHHH
T ss_pred CCCEEeeeeeeCCHHHHHHhCCCcCHHHHHHHHHH-HHHhCCeeccceEEeCCCCCHHHHHHHHHHH
Confidence 4444555554432 3377888888876 7788999877777776 688877665543
No 10
>2pw6_A Uncharacterized protein YGID; JW3007, escherichia coli structural genomics, protein structure, riken and PSI, protein structu initiative; 2.27A {Escherichia coli} SCOP: c.56.6.1
Probab=23.96 E-value=93 Score=27.13 Aligned_cols=65 Identities=12% Similarity=0.031 Sum_probs=42.5
Q ss_pred CCCHHHHHHHHHHhhccCCCcccc-eEEeeEec-------------CCeEEEEeecCCCCCCchHHHHHHHHHH--HHhc
Q 039996 150 STNIAAVRRIAKQVSERGGGLASV-QAMVLIRG-------------EDITEVECNLLKPSKIGGDKVQVEVDEL--AAVE 213 (241)
Q Consensus 150 t~dl~~Ar~IA~~vR~~~GGL~~V-qAmgl~~~-------------~g~~qVs~NL~d~~~t~~~~V~e~V~~~--A~~~ 213 (241)
..|-++|++|++.+++.| ++-- ..++|.|+ --.+|||+|... ++.+-++.=+.+ +++.
T Consensus 92 ~g~peLA~~i~~~l~~~g--~~~~~~~~glDHG~~vPL~~m~p~adiPVVqlSi~~~~----~p~~~~~lG~aL~~lrd~ 165 (271)
T 2pw6_A 92 PGSPALAQRLVELLAPIP--VTLDKEAWGFDHGSWGVLIKMYPDADIPMVQLSIDSSK----PAAWHFEMGRKLAALRDE 165 (271)
T ss_dssp CBCHHHHHHHHHHHTTSC--EEEESSCCCCCHHHHHHHHHHSTTCCSCEEEEEEETTS----CHHHHHHHHHHHGGGGGG
T ss_pred CCCHHHHHHHHHHHHhcC--CcccccccCCCcchhhhHHHhcCCCCCCEEEEeCCCCC----CHHHHHHHHHHHHHHHHc
Confidence 357899999999998754 4322 55777664 136899998532 344444433333 3467
Q ss_pred CCeecce
Q 039996 214 GMAVGKG 220 (241)
Q Consensus 214 Gv~V~g~ 220 (241)
||-|.||
T Consensus 166 ~VlIigS 172 (271)
T 2pw6_A 166 GIMLVAS 172 (271)
T ss_dssp TEEEEEE
T ss_pred CcEEEEe
Confidence 9999886
No 11
>2i0f_A 6,7-dimethyl-8-ribityllumazine synthase 1; lumazine synthase RIBH1, transferase; 2.22A {Brucella abortus} PDB: 2f59_A 2o6h_A*
Probab=23.95 E-value=2.9e+02 Score=22.45 Aligned_cols=71 Identities=14% Similarity=0.109 Sum_probs=51.8
Q ss_pred HHHHHHHhhccCCCcccceEEeeEecCCeEEEEeecCCCCCCchHHHHHHHHHHHHhcCCeecceeeecCCHHHHHHHH
Q 039996 156 VRRIAKQVSERGGGLASVQAMVLIRGEDITEVECNLLKPSKIGGDKVQVEVDELAAVEGMAVGKGYYTDLSQEEIIERY 234 (241)
Q Consensus 156 Ar~IA~~vR~~~GGL~~VqAmgl~~~~g~~qVs~NL~d~~~t~~~~V~e~V~~~A~~~Gv~V~g~y~~g~~pe~ile~~ 234 (241)
++++|+.-..++|.+-.|=++|+-.. |. |..-..=-..+-.-+-++.-++|++|.-+-+|--+.+|.++++
T Consensus 60 a~~la~~~~~~~~~yDavIaLG~VIr-G~-------T~Hfd~Va~~v~~gl~~vsl~~~vPV~~GVLT~~~~eQA~~Ra 130 (157)
T 2i0f_A 60 ISFALDGADNGGTEYDGFVALGTVIR-GE-------TYHFDIVSNESCRALTDLSVEESIAIGNGILTVENEEQAWVHA 130 (157)
T ss_dssp HHHHHHHHHTTCCCCSEEEEEEEEEC-CS-------SSTTHHHHHHHHHHHHHHHHHTTCCEEEEEEEESSHHHHHHHH
T ss_pred HHHHHhhccccCCCCCEEEEeeeeec-CC-------chHHHHHHHHHHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHHh
Confidence 47777766667899999999999983 31 1111111234455566788899999999999888999999987
No 12
>3txv_A Probable tagatose 6-phosphate kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.80A {Sinorhizobium meliloti}
Probab=22.85 E-value=1.2e+02 Score=28.98 Aligned_cols=75 Identities=12% Similarity=0.119 Sum_probs=52.3
Q ss_pred CCHHHHHHHHHHhhccCCCcccceEEeeEecCCeEEEEeecCCC--CCCc--hHHHHHHHHHHHHhcCCee----cce-e
Q 039996 151 TNIAAVRRIAKQVSERGGGLASVQAMVLIRGEDITEVECNLLKP--SKIG--GDKVQVEVDELAAVEGMAV----GKG-Y 221 (241)
Q Consensus 151 ~dl~~Ar~IA~~vR~~~GGL~~VqAmgl~~~~g~~qVs~NL~d~--~~t~--~~~V~e~V~~~A~~~Gv~V----~g~-y 221 (241)
.+++..+.|-+.-.+.+ -| =++|+++|-.|+ ..|+ +..+...|+.+|.+.|++| .+. .
T Consensus 29 ~n~e~i~Ail~aAee~~----------sP---VIIe~t~~qv~~~gGYtG~~p~~f~~~V~~~A~~~~vPv~pV~LhlDH 95 (450)
T 3txv_A 29 AHPLVIEAAMLRAHREK----------AP---VLIEATCNQVNQDGGYTGMTPEDFTRFVGAIADRIEFPREKILLGGDH 95 (450)
T ss_dssp CCHHHHHHHHHHHHHSC----------SC---EEEEEETTTSCTTCTTTTCCHHHHHHHHHHHHHHTTCCGGGEEEEEEE
T ss_pred CCHHHHHHHHHHHHHhC----------CC---EEEEcChhhHhhcCCCCCCCHHHHHHHHHHHHHHcCcCcccEEEECCC
Confidence 57888888877665532 11 257999998886 3555 4789999999999999995 222 2
Q ss_pred e-----ecCCHHHHHHHHHHHh
Q 039996 222 Y-----TDLSQEEIIERYMKLN 238 (241)
Q Consensus 222 ~-----~g~~pe~ile~~~~~~ 238 (241)
. .++.+++.+++..+.+
T Consensus 96 g~~~~w~~~~~~~am~~a~e~i 117 (450)
T 3txv_A 96 LGPNPWKHLPADEAMAKAEAMI 117 (450)
T ss_dssp ESSGGGTTSCHHHHHHHHHHHH
T ss_pred CCCcccccccHHHHHHHHHHHH
Confidence 2 3467787777766554
No 13
>3no5_A Uncharacterized protein; PFAM DUF849 domain containing protein, structural genomics, center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha}
Probab=22.83 E-value=1.2e+02 Score=26.67 Aligned_cols=64 Identities=17% Similarity=0.076 Sum_probs=44.5
Q ss_pred CcccceeeEecccccC-CC---------HHHHHHHHHHHhhCCCcEEEecC-CCCCCCcceEEEeecCCCCCCCCcccHH
Q 039996 1 MLKLMLTCCKVYISES-QN---------KAALESIEQAARLFSAAIIVNKF-EDVTYNRVGYTVVSKLAPTLSSDSCPLK 69 (241)
Q Consensus 1 ~~~~~lveCvpN~SEG-R~---------~~~ie~I~~a~~~~~gv~lld~~-~D~dyNRsv~T~vg~~~~~~~~~~~~v~ 69 (241)
|.++.+|.|-||=+.- ++ .|++++-.++.+. |+.+++++ +|++ -|.+ -+| .+.
T Consensus 2 M~~~~iIt~A~tGa~~t~~~~P~lPvTpeEia~~A~~~~~A--GAaivHlHvRd~~-G~~s----~d~---------~~~ 65 (275)
T 3no5_A 2 MNKPCIISVAITGSLPRKKDNPAVPITVSEQVESTQAAFEA--GATLVHLHVRNDD-ETPT----SNP---------DRF 65 (275)
T ss_dssp -CCCBCEEEECCCSSCCTTTCTTSCCSHHHHHHHHHHHHHH--TCCEEEECEECTT-SCEE----CCH---------HHH
T ss_pred CCCCeEEEEccCCCcCCccCCCCCCCCHHHHHHHHHHHHHc--cCcEEEEeecCCC-CCcC----CCH---------HHH
Confidence 5667799999998876 33 4555555555554 89999998 5555 5532 133 378
Q ss_pred HHHHHHHHHHH
Q 039996 70 STVFAMIKAAF 80 (241)
Q Consensus 70 ~aa~~~~~~A~ 80 (241)
..++..+|+++
T Consensus 66 ~e~~~~IR~~~ 76 (275)
T 3no5_A 66 ALVLEGIRKHA 76 (275)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHHHHhC
Confidence 88889999987
No 14
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=22.32 E-value=37 Score=26.75 Aligned_cols=39 Identities=13% Similarity=0.123 Sum_probs=23.4
Q ss_pred CCCHHHHHHHHHHHhhCCCcEEEecCCCCC-----CCcce-EEEeecCC
Q 039996 16 SQNKAALESIEQAARLFSAAIIVNKFEDVT-----YNRVG-YTVVSKLA 58 (241)
Q Consensus 16 GR~~~~ie~I~~a~~~~~gv~lld~~~D~d-----yNRsv-~T~vg~~~ 58 (241)
||+-..|..|.+. .|++-+++.++.+ .+|.+ ||+.|+++
T Consensus 83 GK~G~nIr~i~~~----tG~~~I~i~~~~~~~~~~~~~~~~vtI~G~~~ 127 (144)
T 2qnd_A 83 GKNGKLIQEIVDK----SGVVRVRIEAENEKNVPQEEGMVPFVFVGTKD 127 (144)
T ss_dssp CGGGHHHHHHHHH----HTCSEEEEEEECTTCCCCCTTEEEEEEEEEHH
T ss_pred CCCCHHHHHHHHH----HCCEEEEEcCCCCCCccccCCeeEEEEEeCHH
Confidence 5555555555543 4653445665433 34644 99999998
No 15
>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A*
Probab=22.06 E-value=1e+02 Score=31.33 Aligned_cols=68 Identities=10% Similarity=0.022 Sum_probs=50.2
Q ss_pred eeeeeeeccCCCHHHHHHHHHHhhccCCCcccceEEeeEecCCeEEEEeecCCCCCCchHHHHHHHHHHHHhcCC
Q 039996 141 VDNYNIPVFSTNIAAVRRIAKQVSERGGGLASVQAMVLIRGEDITEVECNLLKPSKIGGDKVQVEVDELAAVEGM 215 (241)
Q Consensus 141 liayNV~L~t~dl~~Ar~IA~~vR~~~GGL~~VqAmgl~~~~g~~qVs~NL~d~~~t~~~~V~e~V~~~A~~~Gv 215 (241)
=|.|==.|+.+| .+-+|+++.-..|.+.+ ||--|=..++|++|+|+.|--+ ..+..+.-+++|++.|+
T Consensus 479 ki~~ideld~~d-~v~~r~~~~~~~~~~~~--ikPygd~~~DG~VqlsftLPv~----~~~Ae~AA~qla~kMGl 546 (763)
T 3kp1_A 479 KIVYIDELDEND-NVNVRMEETKEFRHSSM--IKPEVEWQADGTVLLTMFLPTS----KRVAEFAAIEFAKKMNL 546 (763)
T ss_dssp GCCCCCCSCSSS-SHHHHHHHTGGGC--CE--ECCCSSSTTCCEEEEEEEESSC----HHHHHHHHHHHHHHTTC
T ss_pred ceeeecccCccc-cHHHHHHHHHHHhccCc--cCCcccccCCceEEEEEeccCC----hHHHHHHHHHHHHHcCC
Confidence 455666677777 67888988887777754 5554444458999999988544 58888999999999997
No 16
>2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A
Probab=21.84 E-value=1.4e+02 Score=26.90 Aligned_cols=24 Identities=17% Similarity=0.022 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccC
Q 039996 68 LKSTVFAMIKAAFENIEPGMHSGS 91 (241)
Q Consensus 68 v~~aa~~~~~~A~~~IDm~~H~G~ 91 (241)
++-|+.+++..+=-++.+..-.|-
T Consensus 322 ~KGAAg~AVQ~~nl~~g~~e~~gl 345 (352)
T 2nqt_A 322 VKGTAGAAVQSMNLALGWPETDGL 345 (352)
T ss_dssp TTTTHHHHHHHHHHHHTCCTTTTC
T ss_pred hHhHHHHHHHHHHHHhCCCcccCC
Confidence 555778888877777777766554
No 17
>4exr_A Putative lipoprotein; YPEB domain dimer, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; 1.85A {Clostridium difficile}
Probab=20.85 E-value=45 Score=27.42 Aligned_cols=35 Identities=23% Similarity=0.170 Sum_probs=29.4
Q ss_pred HHHHHHHhhCCCcEEEecCCCCCCCcceEEEeecC
Q 039996 23 ESIEQAARLFSAAIIVNKFEDVTYNRVGYTVVSKL 57 (241)
Q Consensus 23 e~I~~a~~~~~gv~lld~~~D~dyNRsv~T~vg~~ 57 (241)
+++..+.+.+||..+.++.-|.+..|.+|.+-+..
T Consensus 36 ~A~~~a~~~~pga~I~~iele~~~G~~vYEVe~~~ 70 (174)
T 4exr_A 36 DAINIFKDKYKDADIVDLSLERDLNKFVYTVEGVD 70 (174)
T ss_dssp HHHHHHHHHSTTCEEEEEEEEEETTEEEEEEEEEC
T ss_pred HHHHHHHHHCCCCEEEEEEEEEeCCEEEEEEEEEE
Confidence 45666777899999999999999999999997753
No 18
>1oi2_A Hypothetical protein YCGT; kinase, dihydroxyacetone kinase; 1.75A {Escherichia coli} SCOP: c.119.1.2 PDB: 1oi3_A 1uod_A* 1uoe_A 3pnl_A* 3pnk_A* 3pno_A 3pnq_A 3pnm_A
Probab=20.02 E-value=2e+02 Score=26.84 Aligned_cols=127 Identities=15% Similarity=0.112 Sum_probs=66.8
Q ss_pred CCCCCccccceeeeeC------CCCCHHHHHHHHHHHHHhhccC---CCCeEEeccCCCeeeee----------------
Q 039996 91 SHPRLGVVDHICFHPL------ASAPLDQVAGIAKSVVGDIGSG---LQGVIVIGSTRWVDNYN---------------- 145 (241)
Q Consensus 91 ~HPR~GavDvipf~Pl------~~~t~~ec~~lA~~~a~~ig~~---l~Gat~vGAr~~liayN---------------- 145 (241)
..=|-|+-=.+..|=+ .+.+++|+.++|+++...+..- |..+|+=|+..+. |.
T Consensus 154 ~~gRRGvAGtvlv~KiaGAaAe~G~sL~ev~~~a~~~~~~~~SiGvaL~~ctvP~~g~p~--F~l~~~emE~G~GIHGEP 231 (366)
T 1oi2_A 154 TAGRRGVANTVLIEKLVGAAAERGDSLDACAELGRKLNNQGHSIGIALGACTVPAAGKPS--FTLADNEMEFGVGIHGEP 231 (366)
T ss_dssp CSSBCCCTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHTTEEEEEEEEECC-------------CCTTEEEETCCTTSCC
T ss_pred CCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhceEEEEECCCcCCCCCCCCC--CccCCCceEeccccCCCC
Confidence 3457777766666666 4689999999999988876642 2245555544432 32
Q ss_pred ----eeccCCCHHHHHHHHHHhhcc-------------CCCcccceEEeeEec-CCeEEEEeecCCCCCCc---hHHHHH
Q 039996 146 ----IPVFSTNIAAVRRIAKQVSER-------------GGGLASVQAMVLIRG-EDITEVECNLLKPSKIG---GDKVQV 204 (241)
Q Consensus 146 ----V~L~t~dl~~Ar~IA~~vR~~-------------~GGL~~VqAmgl~~~-~g~~qVs~NL~d~~~t~---~~~V~e 204 (241)
..+.+.| ++++.+...|-.. .|-...=+-.-++.. .+ +|+.=+-+.--|| +|-++.
T Consensus 232 G~~r~~~~sa~-elv~~m~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd--~v~vLVNgLG~T~~~El~iv~~ 308 (366)
T 1oi2_A 232 GIDRRPFSSLD-QTVDEMFDTLLVNGSYHRTLRFWDYQQGSWQEEQQTKQPLQSGD--RVIALVNNLGATPLSELYGVYN 308 (366)
T ss_dssp CSEEEECCCHH-HHHHHHHHHHHHSCCEEEEEEEEETTTTEEEEEEEEECCCCTTC--EEEEEEEECBSCCHHHHHHHHH
T ss_pred ccccCCCCCHH-HHHHHHHHHHHhcccccccccccccccccccccccccCCCCCCC--eEEEEEECCCCccHHHHHHHHH
Confidence 2233433 5666666666542 011111111112322 23 3333122344555 566777
Q ss_pred HHHHHHHhcCCeecceee
Q 039996 205 EVDELAAVEGMAVGKGYY 222 (241)
Q Consensus 205 ~V~~~A~~~Gv~V~g~y~ 222 (241)
.+.+.-+++|+.|...|.
T Consensus 309 ~v~~~L~~~gi~v~r~~v 326 (366)
T 1oi2_A 309 RLTTRCQQAGLTIERNLI 326 (366)
T ss_dssp HHHHHHHHHTCEEEEEEE
T ss_pred HHHHHHHHCCCeEEEEee
Confidence 788877889999988754
Done!