BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039997
(333 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 112 bits (279), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 104/332 (31%), Positives = 147/332 (44%), Gaps = 80/332 (24%)
Query: 2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNR 61
S L L L NY SG IP + S LR L L N L+G IP +L ++ L + L N
Sbjct: 415 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND 474
Query: 62 LNGSIPSCI---TNLLFWKVGNGDLYGLVER--GRDFDLEDIY---NYYNSTVPLSLDRS 113
L G IPS + TNL + + N L G + + GR +L + N ++ +P L
Sbjct: 475 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL--G 532
Query: 114 DTRTL---------------------DTQVVVNFMTKNRYESYK-----------GVILE 141
D R+L ++ NF+ RY K G +LE
Sbjct: 533 DCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLE 592
Query: 142 Y-------------------------------------MAGLDLSSNELTGDISSEIGDL 164
+ M LD+S N L+G I EIG +
Sbjct: 593 FQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSM 652
Query: 165 RNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQ-LTELHSLSKFDVSYNN 223
+ LNL HN +SGSIP+ +L+ + LDLS NKL+G+IPQ ++ L L++ D+S NN
Sbjct: 653 PYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN 712
Query: 224 LSCPIPDKEQFSTFDESSYRGNLNLCCPPINK 255
LS PIP+ QF TF + + N LC P+ +
Sbjct: 713 LSGPIPEMGQFETFPPAKFLNNPGLCGYPLPR 744
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 69/228 (30%), Positives = 100/228 (43%), Gaps = 40/228 (17%)
Query: 3 ALEILDLRDNYFSGRIPYGI-NEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDL--SH 59
L++LDL N FSG +P + N ++L L L N GPI LCQ K ++ +L +
Sbjct: 341 GLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN 400
Query: 60 NRLNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDR-SDTR-- 116
N G IP ++N L +NY + T+P SL S R
Sbjct: 401 NGFTGKIPPTLSNC----------------SELVSLHLSFNYLSGTIPSSLGSLSKLRDL 444
Query: 117 -----TLDTQVVVNFMTKNRYES----YKGVILEYMAGLD---------LSSNELTGDIS 158
L+ ++ M E+ + + E +GL LS+N LTG+I
Sbjct: 445 KLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP 504
Query: 159 SEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP 206
IG L N+ L LS+N SG+IP + + + LDL+ N NG IP
Sbjct: 505 KWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 552
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 71/268 (26%), Positives = 111/268 (41%), Gaps = 47/268 (17%)
Query: 2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNR 61
SAL+ LD+ N SG I+ + L+ L + N GPIP L+ L + L+ N+
Sbjct: 220 SALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENK 277
Query: 62 LNGSIP-----SCITNLLFWKVGNGDLYGLVE---------------------------- 88
G IP +C T L + YG V
Sbjct: 278 FTGEIPDFLSGACDT-LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTL 336
Query: 89 -RGRDFDLEDI-YNYYNSTVPLSLDRSDTRTLDTQVVVNFMT----KNRYESYKGVILEY 142
+ R + D+ +N ++ +P SL L + N + N ++ K + E
Sbjct: 337 LKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQE- 395
Query: 143 MAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLN 202
L L +N TG I + + + L+LS N+LSG+IP S +L + L L N L
Sbjct: 396 ---LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 452
Query: 203 GQIPQ-LTELHSLSKFDVSYNNLSCPIP 229
G+IPQ L + +L + +N+L+ IP
Sbjct: 453 GEIPQELMYVKTLETLILDFNDLTGEIP 480
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 50/97 (51%), Gaps = 3/97 (3%)
Query: 1 DSALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHN 60
+ ++ LD+ N SG IP I L L L N + G IP ++ LR L+I+DLS N
Sbjct: 628 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSN 687
Query: 61 RLNGSIP---SCITNLLFWKVGNGDLYGLVERGRDFD 94
+L+G IP S +T L + N +L G + F+
Sbjct: 688 KLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFE 724
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 97/235 (41%), Gaps = 53/235 (22%)
Query: 2 SALEILDLRDNYFSGRIPY--GINEHSNLRALLLKGNYLQ--GPIPHQLCQLRKLSIMDL 57
++L LDL N SG + + S L+ L + N L G + L +L L ++DL
Sbjct: 97 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDL 155
Query: 58 SHNRLNGSIPSCITNLLFWKV--GNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDT 115
S N ++G+ N++ W + G G+L L G +
Sbjct: 156 SANSISGA------NVVGWVLSDGCGELKHLAISGNKI---------------------S 188
Query: 116 RTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHN 175
+D VN LE+ LD+SSN + I +GD + L++S N
Sbjct: 189 GDVDVSRCVN--------------LEF---LDVSSNNFSTGIPF-LGDCSALQHLDISGN 230
Query: 176 FLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCPIPD 230
LSG + S ++ L++S N+ G IP L L SL ++ N + IPD
Sbjct: 231 KLSGDFSRAISTCTELKLLNISSNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPD 284
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
Query: 172 LSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLS--KF-DVSYNNLSCP 227
LS++ ++GS+ F + SLDLS N L+G + LT L S S KF +VS N L P
Sbjct: 81 LSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP 138
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 112 bits (279), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 104/332 (31%), Positives = 147/332 (44%), Gaps = 80/332 (24%)
Query: 2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNR 61
S L L L NY SG IP + S LR L L N L+G IP +L ++ L + L N
Sbjct: 418 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND 477
Query: 62 LNGSIPSCI---TNLLFWKVGNGDLYGLVER--GRDFDLEDIY---NYYNSTVPLSLDRS 113
L G IPS + TNL + + N L G + + GR +L + N ++ +P L
Sbjct: 478 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL--G 535
Query: 114 DTRTL---------------------DTQVVVNFMTKNRYESYK-----------GVILE 141
D R+L ++ NF+ RY K G +LE
Sbjct: 536 DCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLE 595
Query: 142 Y-------------------------------------MAGLDLSSNELTGDISSEIGDL 164
+ M LD+S N L+G I EIG +
Sbjct: 596 FQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSM 655
Query: 165 RNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQ-LTELHSLSKFDVSYNN 223
+ LNL HN +SGSIP+ +L+ + LDLS NKL+G+IPQ ++ L L++ D+S NN
Sbjct: 656 PYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN 715
Query: 224 LSCPIPDKEQFSTFDESSYRGNLNLCCPPINK 255
LS PIP+ QF TF + + N LC P+ +
Sbjct: 716 LSGPIPEMGQFETFPPAKFLNNPGLCGYPLPR 747
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 69/228 (30%), Positives = 100/228 (43%), Gaps = 40/228 (17%)
Query: 3 ALEILDLRDNYFSGRIPYGI-NEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDL--SH 59
L++LDL N FSG +P + N ++L L L N GPI LCQ K ++ +L +
Sbjct: 344 GLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN 403
Query: 60 NRLNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDR-SDTR-- 116
N G IP ++N L +NY + T+P SL S R
Sbjct: 404 NGFTGKIPPTLSNC----------------SELVSLHLSFNYLSGTIPSSLGSLSKLRDL 447
Query: 117 -----TLDTQVVVNFMTKNRYES----YKGVILEYMAGLD---------LSSNELTGDIS 158
L+ ++ M E+ + + E +GL LS+N LTG+I
Sbjct: 448 KLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP 507
Query: 159 SEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP 206
IG L N+ L LS+N SG+IP + + + LDL+ N NG IP
Sbjct: 508 KWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 555
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 71/268 (26%), Positives = 111/268 (41%), Gaps = 47/268 (17%)
Query: 2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNR 61
SAL+ LD+ N SG I+ + L+ L + N GPIP L+ L + L+ N+
Sbjct: 223 SALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENK 280
Query: 62 LNGSIP-----SCITNLLFWKVGNGDLYGLVE---------------------------- 88
G IP +C T L + YG V
Sbjct: 281 FTGEIPDFLSGACDT-LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTL 339
Query: 89 -RGRDFDLEDI-YNYYNSTVPLSLDRSDTRTLDTQVVVNFMT----KNRYESYKGVILEY 142
+ R + D+ +N ++ +P SL L + N + N ++ K + E
Sbjct: 340 LKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQE- 398
Query: 143 MAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLN 202
L L +N TG I + + + L+LS N+LSG+IP S +L + L L N L
Sbjct: 399 ---LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 455
Query: 203 GQIPQ-LTELHSLSKFDVSYNNLSCPIP 229
G+IPQ L + +L + +N+L+ IP
Sbjct: 456 GEIPQELMYVKTLETLILDFNDLTGEIP 483
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 50/97 (51%), Gaps = 3/97 (3%)
Query: 1 DSALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHN 60
+ ++ LD+ N SG IP I L L L N + G IP ++ LR L+I+DLS N
Sbjct: 631 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSN 690
Query: 61 RLNGSIP---SCITNLLFWKVGNGDLYGLVERGRDFD 94
+L+G IP S +T L + N +L G + F+
Sbjct: 691 KLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFE 727
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 97/235 (41%), Gaps = 53/235 (22%)
Query: 2 SALEILDLRDNYFSGRIPY--GINEHSNLRALLLKGNYLQ--GPIPHQLCQLRKLSIMDL 57
++L LDL N SG + + S L+ L + N L G + L +L L ++DL
Sbjct: 100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDL 158
Query: 58 SHNRLNGSIPSCITNLLFWKV--GNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDT 115
S N ++G+ N++ W + G G+L L G +
Sbjct: 159 SANSISGA------NVVGWVLSDGCGELKHLAISGNKI---------------------S 191
Query: 116 RTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHN 175
+D VN LE+ LD+SSN + I +GD + L++S N
Sbjct: 192 GDVDVSRCVN--------------LEF---LDVSSNNFSTGIPF-LGDCSALQHLDISGN 233
Query: 176 FLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCPIPD 230
LSG + S ++ L++S N+ G IP L L SL ++ N + IPD
Sbjct: 234 KLSGDFSRAISTCTELKLLNISSNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPD 287
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
Query: 172 LSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLS--KF-DVSYNNLSCP 227
LS++ ++GS+ F + SLDLS N L+G + LT L S S KF +VS N L P
Sbjct: 84 LSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP 141
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 74/251 (29%), Positives = 115/251 (45%), Gaps = 28/251 (11%)
Query: 12 NYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCIT 71
N G IP I + + L L + + G IP L Q++ L +D S+N L+G++P I+
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 72 NLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNR 131
+L +L G+ G N + +P S + N +T
Sbjct: 147 SL-------PNLVGITFDG---------NRISGAIPDSYGSFSKLFTSMTISRNRLTGKI 190
Query: 132 YESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLS---GSIPESFSNL 188
++ + L ++ DLS N L GD S G +N ++L+ N L+ G + S
Sbjct: 191 PPTFANLNLAFV---DLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLS---- 243
Query: 189 KMIESLDLSHNKLNGQIPQ-LTELHSLSKFDVSYNNLSCPIPDKEQFSTFDESSYRGNLN 247
K + LDL +N++ G +PQ LT+L L +VS+NNL IP FD S+Y N
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKC 303
Query: 248 LCCPPINKSCT 258
LC P+ +CT
Sbjct: 304 LCGSPL-PACT 313
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 5/90 (5%)
Query: 142 YMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKL 201
Y+ G+ N L G I I L +H L ++H +SG+IP+ S +K + +LD S+N L
Sbjct: 82 YIGGI----NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL 137
Query: 202 NGQI-PQLTELHSLSKFDVSYNNLSCPIPD 230
+G + P ++ L +L N +S IPD
Sbjct: 138 SGTLPPSISSLPNLVGITFDGNRISGAIPD 167
Score = 31.2 bits (69), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 4 LEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNR-L 62
L LDLR+N G +P G+ + L +L + N L G IP Q L++ + ++N+ L
Sbjct: 246 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCL 304
Query: 63 NGS-IPSC 69
GS +P+C
Sbjct: 305 CGSPLPAC 312
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 161 IGDLRNIHGLNLSHNFL-SGSIPESFSNLKMIESLDLSHNKLNG 203
IG L+ + LN++HN + S +PE FSNL +E LDLS NK+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 161 IGDLRNIHGLNLSHNFL-SGSIPESFSNLKMIESLDLSHNKLNG 203
IG L+ + LN++HN + S +PE FSNL +E LDLS NK+
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 161 IGDLRNIHGLNLSHNFL-SGSIPESFSNLKMIESLDLSHNKLNG 203
IG L+ + LN++HN + S +PE FSNL +E LDLS NK+
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 161 IGDLRNIHGLNLSHNFL-SGSIPESFSNLKMIESLDLSHNKLNG 203
IG L+ + LN++HN + S +PE FSNL +E LDLS NK+
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 161 IGDLRNIHGLNLSHNFL-SGSIPESFSNLKMIESLDLSHNKLNG 203
IG L+ + LN++HN + S +PE FSNL +E LDLS NK+
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 161 IGDLRNIHGLNLSHNFL-SGSIPESFSNLKMIESLDLSHNKLNG 203
IG L+ + LN++HN + S +PE FSNL +E LDLS NK+
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 187
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 143 MAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHN 199
MAG N L DI +E LRN+ L+LS L P +F++L ++ L++SHN
Sbjct: 476 MAGNSFQENFLP-DIFTE---LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 528
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 161 IGDLRNIHGLNLSHNFL-SGSIPESFSNLKMIESLDLSHNKLNG 203
IG L+ + LN++HN + S +PE FSNL +E LDLS NK+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 143 MAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHN 199
MAG N L DI +E LRN+ L+LS L P +F++L ++ L++SHN
Sbjct: 452 MAGNSFQENFLP-DIFTE---LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 504
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 73/170 (42%), Gaps = 34/170 (20%)
Query: 164 LRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKL----NGQIPQLTELHSLSKFDV 219
L ++ L L+HN+L+ P FS+L + L L+ N+L + +P E+ D+
Sbjct: 479 LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEI-----LDI 533
Query: 220 SYNNLSCPIPD-----------------KEQFSTFDESSYRGNLNLCCPPINKSCTNLPE 262
S N L P PD + + STF N+ + PP + C P+
Sbjct: 534 SRNQLLAPNPDVFVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCV-YPD 592
Query: 263 ------LLETSSKGPEDESAVDMVALYWSFVASCVTVMLGLLAILWVNPY 306
L S++G ++E + + + F+ VT+ L L+ IL V +
Sbjct: 593 SFSGVSLFSLSTEGCDEEEVLKSLK-FSLFIVCTVTLTLFLMTILTVTKF 641
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 59/151 (39%), Gaps = 7/151 (4%)
Query: 52 LSIMDLSHNRLNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLD 111
L I+D+S N I +N + + G F +I + +T L
Sbjct: 206 LEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFA-GLA 264
Query: 112 RSDTRTLDTQVVVNFMTKNR-YESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGL 170
RS R LD F +R +E+ K + L+L+ N++ L N+ L
Sbjct: 265 RSSVRHLDLSHGFVFSLNSRVFETLKD-----LKVLNLAYNKINKIADEAFYGLDNLQVL 319
Query: 171 NLSHNFLSGSIPESFSNLKMIESLDLSHNKL 201
NLS+N L +F L + +DL N +
Sbjct: 320 NLSYNLLGELYSSNFYGLPKVAYIDLQKNHI 350
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 161 IGDLRNIHGLNLSHNFL-SGSIPESFSNLKMIESLDLSHNKL 201
IG L+ + LN++HN + S +PE FSNL +E LDLS NK+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 55/113 (48%), Gaps = 9/113 (7%)
Query: 148 LSSNELTGDISSE--IGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 205
L+ NEL G ISS+ G L ++ L L N L+G P +F I+ L L NK+
Sbjct: 36 LNDNEL-GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEIS 94
Query: 206 PQL-TELHSLSKFDVSYNNLSCPIPDKEQFSTFDESSYRGNLNLCCPPINKSC 257
++ LH L ++ N +SC +P +F+ + +LNL P N +C
Sbjct: 95 NKMFLGLHQLKTLNLYDNQISCVMP-----GSFEHLNSLTSLNLASNPFNCNC 142
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 94/222 (42%), Gaps = 23/222 (10%)
Query: 2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNR 61
S L+ LDL + S +P G+ S L+ L+L N + LCQ+ + L+H
Sbjct: 278 SGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFEN-----LCQISASNFPSLTHLS 331
Query: 62 LNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDL--EDIYNYYNSTVPLSLDRSDTRTLD 119
+ G N ++G G L L E R+ DL +DI + L R+ +
Sbjct: 332 IKG-------NTKRLELGTGCLENL-ENLRELDLSHDDIETSDCCNLQL---RNLSHLQS 380
Query: 120 TQVVVNFMTKNRYESYKGVILEYMAGLDLSSNEL-TGDISSEIGDLRNIHGLNLSHNFLS 178
+ N + E++K + LDL+ L D S +L + LNLSH+ L
Sbjct: 381 LNLSYNEPLSLKTEAFKEC--PQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLD 438
Query: 179 GSIPESFSNLKMIESLDLSHNKL-NGQIPQLTELHSLSKFDV 219
S + F L ++ L+L N G I + L +L + ++
Sbjct: 439 ISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEI 480
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 11/78 (14%)
Query: 3 ALEILDLRDNYFSGRIPYGINEHSN-------LRALLLKGNYLQGPIPHQLCQLRKLSIM 55
AL+ L+L+ N+F P G + +N L L+L L H L+ ++ +
Sbjct: 450 ALQHLNLQGNHF----PKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHV 505
Query: 56 DLSHNRLNGSIPSCITNL 73
DLSHNRL S +++L
Sbjct: 506 DLSHNRLTSSSIEALSHL 523
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 35.8 bits (81), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 146 LDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 205
LDL N + E ++ L L+ N +S P +F+NL + +L L N+L I
Sbjct: 37 LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LI 95
Query: 206 P--QLTELHSLSKFDVSYNNL 224
P T L +L+K D+S N +
Sbjct: 96 PLGVFTGLSNLTKLDISENKI 116
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 35.4 bits (80), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 143 MAGLDLSSNELTGD--ISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNK 200
+ LDLS N++ S ++ +L ++ LNLSHN G ++F +E LDL+ +
Sbjct: 349 LQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTR 408
Query: 201 LNGQIPQ--LTELHSLSKFDVSY 221
L+ PQ LH L +++Y
Sbjct: 409 LHINAPQSPFQNLHFLQVLNLTY 431
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 140 LEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHN 199
L M+ +DLS N LT D + L+ I+ LNL+ N ++ P L +++LSHN
Sbjct: 496 LGKMSHVDLSHNSLTCDSIDSLSHLKGIY-LNLAANSINIISPRLLPILSQQSTINLSHN 554
Query: 200 KLN 202
L+
Sbjct: 555 PLD 557
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 35.4 bits (80), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 54/102 (52%), Gaps = 10/102 (9%)
Query: 146 LDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLN--G 203
L+LSSN ++ DIS+ G L ++ LN S N ++ P +NL +E LD+S NK++
Sbjct: 134 LELSSNTIS-DISALSG-LTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSDIS 189
Query: 204 QIPQLTELHSLSKFDVSYNNLSCPIPDKEQFSTFDESSYRGN 245
+ +LT L SL ++ NN I + DE S GN
Sbjct: 190 VLAKLTNLESL----IATNNQISDITPLGILTNLDELSLNGN 227
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 35.4 bits (80), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 39/64 (60%)
Query: 139 ILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSH 198
+ E + LDLS+N +T +S++ N+ L L+ N ++ +SFS+L +E LDLS+
Sbjct: 24 LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY 83
Query: 199 NKLN 202
N L+
Sbjct: 84 NYLS 87
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 34.7 bits (78), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%)
Query: 144 AGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKL 201
A LDL +N++T + +L+N+H L L +N +S P +F+ L +E L LS N+L
Sbjct: 55 ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 112
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 34.7 bits (78), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%)
Query: 144 AGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKL 201
A LDL +N++T + +L+N+H L L +N +S P +F+ L +E L LS N+L
Sbjct: 55 ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 112
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 34.7 bits (78), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 39/64 (60%)
Query: 139 ILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSH 198
+ E + LDLS+N +T +S++ N+ L L+ N ++ +SFS+L +E LDLS+
Sbjct: 50 LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY 109
Query: 199 NKLN 202
N L+
Sbjct: 110 NYLS 113
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 49/105 (46%), Gaps = 12/105 (11%)
Query: 161 IGDLRNIHGLNLSHNFL-SGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSK--- 216
IG L + LN++HNF+ S +P FSNL + +DLS+N + Q + +L L +
Sbjct: 124 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI--QTITVNDLQFLRENPQ 181
Query: 217 ----FDVSYNNLSCPIPDKEQFSTFDESSYRGNLNLCCPPINKSC 257
D+S N + Q E + RGN N I K+C
Sbjct: 182 VNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFN--SSNIMKTC 224
Score = 31.2 bits (69), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 11/97 (11%)
Query: 134 SYKGVILEYMAGLDLSSNELTGDISSEIGDL--RNIHGLNLSHNFLSGSIPES--FSNLK 189
S+K V L ++ LDLS N L+ DL ++ L+LS N G+I S F L+
Sbjct: 343 SFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN---GAIIMSANFMGLE 399
Query: 190 MIESLDLSHNKLNGQIPQLTELHSLSK---FDVSYNN 223
++ LD H+ L ++ + + SL K D+SY N
Sbjct: 400 ELQHLDFQHSTLK-RVTEFSAFLSLEKLLYLDISYTN 435
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 49/105 (46%), Gaps = 12/105 (11%)
Query: 161 IGDLRNIHGLNLSHNFL-SGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSK--- 216
IG L + LN++HNF+ S +P FSNL + +DLS+N + Q + +L L +
Sbjct: 119 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI--QTITVNDLQFLRENPQ 176
Query: 217 ----FDVSYNNLSCPIPDKEQFSTFDESSYRGNLNLCCPPINKSC 257
D+S N + Q E + RGN N I K+C
Sbjct: 177 VNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFN--SSNIMKTC 219
Score = 31.6 bits (70), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 11/97 (11%)
Query: 134 SYKGVILEYMAGLDLSSNELTGDISSEIGDL--RNIHGLNLSHNFLSGSIPES--FSNLK 189
S+K V L ++ LDLS N L+ DL ++ L+LS N G+I S F L+
Sbjct: 338 SFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN---GAIIMSANFMGLE 394
Query: 190 MIESLDLSHNKLNGQIPQLTELHSLSK---FDVSYNN 223
++ LD H+ L ++ + + SL K D+SY N
Sbjct: 395 ELQHLDFQHSTLK-RVTEFSAFLSLEKLLYLDISYTN 430
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 54/102 (52%), Gaps = 10/102 (9%)
Query: 146 LDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLN--G 203
L+LSSN ++ DIS+ G L ++ L+ S N ++ P +NL +E LD+S NK++
Sbjct: 134 LELSSNTIS-DISALSG-LTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSDIS 189
Query: 204 QIPQLTELHSLSKFDVSYNNLSCPIPDKEQFSTFDESSYRGN 245
+ +LT L SL ++ NN I + DE S GN
Sbjct: 190 VLAKLTNLESL----IATNNQISDITPLGILTNLDELSLNGN 227
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 54/102 (52%), Gaps = 10/102 (9%)
Query: 146 LDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLN--G 203
L+LSSN ++ DIS+ G L ++ L+ S N ++ P +NL +E LD+S NK++
Sbjct: 134 LELSSNTIS-DISALSG-LTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSDIS 189
Query: 204 QIPQLTELHSLSKFDVSYNNLSCPIPDKEQFSTFDESSYRGN 245
+ +LT L SL ++ NN I + DE S GN
Sbjct: 190 VLAKLTNLESL----IATNNQISDITPLGILTNLDELSLNGN 227
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 8/94 (8%)
Query: 140 LEYMAGLDLSSNELTGDISSEIGD---LRNIHGLNLSHNFLSGSIPESFSNLKMIESLDL 196
++ + LD+S N ++ D + GD +++ LN+S N L+ +I I+ LDL
Sbjct: 373 MKSLQQLDISQNSVSYD--EKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDL 428
Query: 197 SHNKLNGQIPQLTELHSLSKFDVSYNNLSCPIPD 230
NK+ Q+ +L +L + +V+ N L +PD
Sbjct: 429 HSNKIKSIPKQVVKLEALQELNVASNQLK-SVPD 461
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 38/59 (64%), Gaps = 3/59 (5%)
Query: 170 LNLSHNFLSGSIPESFSNLKMIESLDLSHNKLN--GQIPQL-TELHSLSKFDVSYNNLS 225
L+ S+N L+ ++ E+ +L +E+L L N+L +I ++ T++ SL + D+S N++S
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS 387
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Query: 140 LEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHN 199
L + L+LS N L L ++ L L H ++ +F +LK +E L+LSHN
Sbjct: 177 LVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHN 236
Query: 200 KLNGQIPQ--LTELHSLSKFDVSYNNLSC 226
L +P T LH L + +++N C
Sbjct: 237 NLMS-LPHDLFTPLHRLERVHLNHNPWHC 264
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 7/73 (9%)
Query: 146 LDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNG-- 203
L L+ NE+ + L ++ LNLS NFL F NL +E LDLS+N +
Sbjct: 304 LTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALG 363
Query: 204 -----QIPQLTEL 211
+P L EL
Sbjct: 364 DQSFLGLPNLKEL 376
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 146 LDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 205
L+LS N L L ++ L L H ++ +F +LK +E L+LSHN L +
Sbjct: 183 LELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNL-MSL 241
Query: 206 PQ--LTELHSLSKFDVSYNNLSC 226
P T LH L + +++N C
Sbjct: 242 PHDLFTPLHRLERVHLNHNPWHC 264
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 142 YMAGLDLSSNELTGDISSEIGDLR--NIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHN 199
Y A LDLS N L+ + +E R N+H L LSHN L+ E+F + + LDLS N
Sbjct: 40 YTALLDLSHNNLSR-LRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98
Query: 200 KLN 202
L+
Sbjct: 99 HLH 101
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 51/113 (45%), Gaps = 13/113 (11%)
Query: 126 FMTKNRYESYKGVILEYMAGLD---LSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIP 182
+T N+ +S + + + L L N+L L N+ LNL+HN L S+P
Sbjct: 91 ILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ-SLP 149
Query: 183 ES-FSNLKMIESLDLSHNKLN----GQIPQLTELHSLSKFDVSYNNLSCPIPD 230
+ F L + LDLS+N+L G +LT+L L Y N +PD
Sbjct: 150 KGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLR----LYQNQLKSVPD 198
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 157 ISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSK 216
+ E D+R +H L+H L+ + L ++ LDLSHN+L P L L L
Sbjct: 436 LKMEYADVRVLH---LAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEV 490
Query: 217 FDVSYNNL 224
S N L
Sbjct: 491 LQASDNAL 498
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 157 ISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSK 216
+ E D+R +H L+H L+ + L ++ LDLSHN+L P L L L
Sbjct: 436 LKMEYADVRVLH---LAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEV 490
Query: 217 FDVSYNNL 224
S N L
Sbjct: 491 LQASDNAL 498
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 31.2 bits (69), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 63/132 (47%), Gaps = 10/132 (7%)
Query: 136 KGVILEYMAGLD---LSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIE 192
K +L+ + L+ LSS L LRN++ L+LSHN L+G ++ S+LK +
Sbjct: 467 KTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDALSHLKGL- 525
Query: 193 SLDLSHNKLNGQIPQ-LTELHSLSKFDVSYNNLSCPIPDKEQFSTFDESSYRGNLNLCCP 251
L+++ N + P L L S ++S+N L C + F T+ Y+ NL+
Sbjct: 526 YLNMASNNIRIIPPHLLPALSQQSIINLSHNPLDCTCSNI-HFITW----YKENLHKLED 580
Query: 252 PINKSCTNLPEL 263
+C N P L
Sbjct: 581 SEETTCANPPSL 592
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
Query: 140 LEYMAGLDLSSNELTGD--ISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLS 197
LE + LDLS +++ + ++ +LR++ LNLS+N G ++F +E LD++
Sbjct: 348 LENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVA 407
Query: 198 HNKLNGQIPQ--LTELHSLSKFDVSY 221
L+ + P LH L ++S+
Sbjct: 408 FTHLHVKAPHSPFQNLHLLRVLNLSH 433
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 186 SNLKMIESLDLSHNKLNGQIPQLTE-LHSLSKFDVSYNNL-SCPIPDKEQFSTFDESSYR 243
L ++ +LDLSHN+L +P L + L +L+ DVS+N L S P+ E +
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 244 GNLNLCCPP 252
GN PP
Sbjct: 133 GNELKTLPP 141
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 186 SNLKMIESLDLSHNKLNGQIPQLTE-LHSLSKFDVSYNNL-SCPIPDKEQFSTFDESSYR 243
L ++ +LDLSHN+L +P L + L +L+ DVS+N L S P+ E +
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 244 GNLNLCCPP 252
GN PP
Sbjct: 133 GNELKTLPP 141
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 186 SNLKMIESLDLSHNKLNGQIPQLTE-LHSLSKFDVSYNNL-SCPIPDKEQFSTFDESSYR 243
L ++ +LDLSHN+L +P L + L +L+ DVS+N L S P+ E +
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 244 GNLNLCCPP 252
GN PP
Sbjct: 133 GNELKTLPP 141
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 186 SNLKMIESLDLSHNKLNGQIPQLTE-LHSLSKFDVSYNNL-SCPIPDKEQFSTFDESSYR 243
L ++ +LDLSHN+L +P L + L +L+ DVS+N L S P+ E +
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 244 GNLNLCCPP 252
GN PP
Sbjct: 133 GNELKTLPP 141
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 186 SNLKMIESLDLSHNKLNGQIPQLTE-LHSLSKFDVSYNNL-SCPIPDKEQFSTFDESSYR 243
L ++ +LDLSHN+L +P L + L +L+ DVS+N L S P+ E +
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 244 GNLNLCCPP 252
GN PP
Sbjct: 133 GNELKTLPP 141
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 186 SNLKMIESLDLSHNKLNGQIPQLTE-LHSLSKFDVSYNNL-SCPIPDKEQFSTFDESSYR 243
L ++ +LDLSHN+L +P L + L +L+ DVS+N L S P+ E +
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 244 GNLNLCCPP 252
GN PP
Sbjct: 133 GNELKTLPP 141
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 186 SNLKMIESLDLSHNKLNGQIPQLTE-LHSLSKFDVSYNNL-SCPIPDKEQFSTFDESSYR 243
L ++ +LDLSHN+L +P L + L +L+ DVS+N L S P+ E +
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 244 GNLNLCCPP 252
GN PP
Sbjct: 133 GNELKTLPP 141
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 186 SNLKMIESLDLSHNKLNGQIPQLTE-LHSLSKFDVSYNNL-SCPIPDKEQFSTFDESSYR 243
L ++ +LDLSHN+L +P L + L +L+ DVS+N L S P+ E +
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 244 GNLNLCCPP 252
GN PP
Sbjct: 133 GNELKTLPP 141
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 186 SNLKMIESLDLSHNKLNGQIPQLTE-LHSLSKFDVSYNNL-SCPIPDKEQFSTFDESSYR 243
L ++ +LDLSHN+L +P L + L +L+ DVS+N L S P+ E +
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 244 GNLNLCCPP 252
GN PP
Sbjct: 133 GNELKTLPP 141
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 186 SNLKMIESLDLSHNKLNGQIPQLTE-LHSLSKFDVSYNNL-SCPIPDKEQFSTFDESSYR 243
L ++ +LDLSHN+L +P L + L +L+ DVS+N L S P+ E +
Sbjct: 75 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 133
Query: 244 GNLNLCCPP 252
GN PP
Sbjct: 134 GNELKTLPP 142
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 141 EYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNK 200
+++ +DLS+N ++ + ++ + L LS+N L P +F LK + L L N
Sbjct: 54 KHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGND 113
Query: 201 LNGQIPQ--LTELHSLSKFDVSYNNLSC 226
++ +P+ +L +LS + N L C
Sbjct: 114 IS-VVPEGAFNDLSALSHLAIGANPLYC 140
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 157 ISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTE-LHSLS 215
+ E+ + +++ ++LS+N +S +SFSN+ + +L LS+N+L P+ + L SL
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 216 KFDVSYNNLS 225
+ N++S
Sbjct: 106 LLSLHGNDIS 115
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 11/67 (16%)
Query: 2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNR 61
S L+I ++ N F ++ L L L GN L +P ++ L L ++DLSHNR
Sbjct: 232 SNLQIFNISANIF---------KYDFLTRLYLNGNSLTE-LPAEIKNLSNLRVLDLSHNR 281
Query: 62 LNGSIPS 68
L S+P+
Sbjct: 282 LT-SLPA 287
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 11/102 (10%)
Query: 146 LDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLN--G 203
L+LSSN ++ DIS+ G L ++ LN + + +NL +E LD+S NK++
Sbjct: 134 LELSSNTIS-DISALSG-LTSLQQLNFGNQVTD---LKPLANLTTLERLDISSNKVSDIS 188
Query: 204 QIPQLTELHSLSKFDVSYNNLSCPIPDKEQFSTFDESSYRGN 245
+ +LT L SL ++ NN I + DE S GN
Sbjct: 189 VLAKLTNLESL----IATNNQISDITPLGILTNLDELSLNGN 226
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 11/102 (10%)
Query: 146 LDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLN--G 203
L+LSSN ++ DIS+ G L ++ LN + + +NL +E LD+S NK++
Sbjct: 134 LELSSNTIS-DISALSG-LTSLQQLNFGNQVTD---LKPLANLTTLERLDISSNKVSDIS 188
Query: 204 QIPQLTELHSLSKFDVSYNNLSCPIPDKEQFSTFDESSYRGN 245
+ +LT L SL ++ NN I + DE S GN
Sbjct: 189 VLAKLTNLESL----IATNNQISDITPLGILTNLDELSLNGN 226
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 90/196 (45%), Gaps = 22/196 (11%)
Query: 18 IPYGINEHSNLRALLLKGNYLQGPIPH----QLCQLRKLSIMDLSHNRLNGSIPSCITNL 73
+P GI S+ L L+ N LQ +PH +L QL KLS LS N L S C +
Sbjct: 22 VPTGI--PSSATRLELESNKLQS-LPHGVFDKLTQLTKLS---LSSNGL--SFKGCCSQS 73
Query: 74 LF----WKVGNGDLYGLVERGRDF-DLEDI--YNYYNSTVPLSLDRSDTRTLDTQVVVNF 126
F K + G++ +F LE + ++ +S + + S +L + ++
Sbjct: 74 DFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 133
Query: 127 MTKNRYESYKGVI--LEYMAGLDLSSNELTGDISSEI-GDLRNIHGLNLSHNFLSGSIPE 183
+ ++ G+ L + L ++ N + +I +LRN+ L+LS L P
Sbjct: 134 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 193
Query: 184 SFSNLKMIESLDLSHN 199
+F++L ++ L++SHN
Sbjct: 194 AFNSLSSLQVLNMSHN 209
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%)
Query: 148 LSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNK 200
L N ++ ++ RN+ L L N L+G +F+ L ++E LDLS N
Sbjct: 38 LHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNA 90
>pdb|1GM5|A Chain A, Structure Of Recg Bound To Three-Way Dna Junction
Length = 780
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 32/77 (41%)
Query: 202 NGQIPQLTELHSLSKFDVSYNNLSCPIPDKEQFSTFDESSYRGNLNLCCPPINKSCTNLP 261
NGQI + H+L + DV + NL I D++ + N + S T +P
Sbjct: 469 NGQIDVVIGTHALIQEDVHFKNLGLVIIDEQHRFGVKQREALMNKGKMVDTLVMSATPIP 528
Query: 262 ELLETSSKGPEDESAVD 278
+ + G D + +D
Sbjct: 529 RSMALAFYGDLDVTVID 545
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 156 DISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLS 215
D S E L N+ L L + S+P S +NL+ ++SL + ++ L+ P + L L
Sbjct: 174 DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLE 232
Query: 216 KFDV 219
+ D+
Sbjct: 233 ELDL 236
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 7/76 (9%)
Query: 141 EYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNK 200
E + L+LSSN LTG + + + L HN SIP+ ++L+ ++ L+++ N+
Sbjct: 428 ESILVLNLSSNMLTGSVFRCLPPKVKVLDL---HNNRIMSIPKDVTHLQALQELNVASNQ 484
Query: 201 L----NGQIPQLTELH 212
L +G +LT L
Sbjct: 485 LKSVPDGVFDRLTSLQ 500
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 166 NIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSK-FDVSYNNL 224
NI LNL+HN L P +F+ + LD N ++ P+L ++ L K ++ +N L
Sbjct: 26 NITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNEL 85
Query: 225 S 225
S
Sbjct: 86 S 86
>pdb|3RJR|A Chain A, Crystal Structure Of Pro-tgf Beta 1
pdb|3RJR|B Chain B, Crystal Structure Of Pro-tgf Beta 1
pdb|3RJR|C Chain C, Crystal Structure Of Pro-tgf Beta 1
pdb|3RJR|D Chain D, Crystal Structure Of Pro-tgf Beta 1
Length = 363
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
Query: 120 TQVVVNFMTKNRYESYKGVILEYMAGLDLSSN----ELTGDISSEIGDLRNIHGLN 171
T VV ++T R E+ +G L D N E+ G S GDL IHG+N
Sbjct: 174 TGVVRQWLT--RREAIEGFRLSAHCSCDSKDNTLHVEINGFNSGRRGDLATIHGMN 227
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,375,400
Number of Sequences: 62578
Number of extensions: 436944
Number of successful extensions: 1097
Number of sequences better than 100.0: 90
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 753
Number of HSP's gapped (non-prelim): 284
length of query: 333
length of database: 14,973,337
effective HSP length: 99
effective length of query: 234
effective length of database: 8,778,115
effective search space: 2054078910
effective search space used: 2054078910
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)