Query 039997
Match_columns 333
No_of_seqs 225 out of 2681
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 04:05:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039997.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039997hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.9 3.7E-25 8E-30 225.2 16.5 243 2-252 356-611 (968)
2 PLN00113 leucine-rich repeat r 99.9 3.3E-23 7.2E-28 210.9 16.1 252 2-253 308-589 (968)
3 KOG4194 Membrane glycoprotein 99.9 4.5E-24 9.8E-29 192.1 3.2 265 2-267 173-487 (873)
4 KOG4237 Extracellular matrix p 99.9 5.5E-23 1.2E-27 177.3 4.4 248 2-250 67-383 (498)
5 KOG4194 Membrane glycoprotein 99.9 5E-23 1.1E-27 185.4 1.4 238 3-248 150-405 (873)
6 KOG0617 Ras suppressor protein 99.8 1.5E-21 3.2E-26 150.7 -4.6 159 2-231 33-192 (264)
7 KOG0444 Cytoskeletal regulator 99.7 1.5E-19 3.2E-24 164.7 0.3 250 2-253 103-380 (1255)
8 KOG4237 Extracellular matrix p 99.7 3.2E-19 7E-24 154.2 1.7 241 7-250 51-361 (498)
9 KOG0444 Cytoskeletal regulator 99.7 3.6E-18 7.7E-23 155.7 -2.8 102 140-243 221-324 (1255)
10 KOG0472 Leucine-rich repeat pr 99.7 2.1E-18 4.6E-23 149.5 -4.3 236 3-247 69-309 (565)
11 KOG0618 Serine/threonine phosp 99.6 9.7E-18 2.1E-22 158.7 -3.7 239 2-247 241-488 (1081)
12 PRK15387 E3 ubiquitin-protein 99.6 1.7E-15 3.7E-20 146.5 10.4 81 141-229 382-462 (788)
13 KOG0617 Ras suppressor protein 99.6 3.1E-17 6.8E-22 126.9 -3.7 162 22-253 29-191 (264)
14 PRK15370 E3 ubiquitin-protein 99.6 2E-15 4.3E-20 146.7 7.3 79 2-87 199-278 (754)
15 PLN03150 hypothetical protein; 99.6 4.9E-15 1.1E-19 142.8 9.2 117 142-258 419-538 (623)
16 PRK15387 E3 ubiquitin-protein 99.6 2.2E-14 4.8E-19 138.8 13.0 101 141-249 342-459 (788)
17 KOG0472 Leucine-rich repeat pr 99.6 1.1E-16 2.3E-21 139.1 -3.1 193 3-226 115-311 (565)
18 PRK15370 E3 ubiquitin-protein 99.6 1.1E-14 2.4E-19 141.5 10.1 204 2-225 220-428 (754)
19 KOG0618 Serine/threonine phosp 99.5 2.6E-15 5.6E-20 142.6 0.7 216 2-224 264-488 (1081)
20 KOG0532 Leucine-rich repeat (L 99.4 5.3E-15 1.1E-19 133.8 -3.1 170 5-227 78-249 (722)
21 PLN03210 Resistant to P. syrin 99.4 1.7E-12 3.8E-17 133.8 14.5 80 2-82 634-715 (1153)
22 PLN03150 hypothetical protein; 99.4 1.9E-12 4.2E-17 125.0 11.0 91 140-230 441-533 (623)
23 PF14580 LRR_9: Leucine-rich r 99.4 4.4E-13 9.5E-18 107.4 5.5 139 8-219 3-147 (175)
24 cd00116 LRR_RI Leucine-rich re 99.4 7.2E-14 1.6E-18 124.7 1.0 84 2-85 51-151 (319)
25 cd00116 LRR_RI Leucine-rich re 99.3 8.9E-14 1.9E-18 124.2 -1.5 184 2-227 81-293 (319)
26 PLN03210 Resistant to P. syrin 99.3 2.2E-11 4.8E-16 125.7 15.8 80 164-245 777-856 (1153)
27 PF14580 LRR_9: Leucine-rich r 99.3 5.4E-13 1.2E-17 106.9 2.2 86 140-227 41-128 (175)
28 KOG1259 Nischarin, modulator o 99.3 3.2E-13 6.9E-18 113.7 -0.8 131 25-228 283-415 (490)
29 COG4886 Leucine-rich repeat (L 99.3 5.4E-12 1.2E-16 116.2 6.4 175 2-228 116-293 (394)
30 PF13855 LRR_8: Leucine rich r 99.3 2.9E-12 6.3E-17 84.8 3.1 61 2-62 1-61 (61)
31 PF13855 LRR_8: Leucine rich r 99.2 1.2E-11 2.6E-16 81.8 2.8 61 141-201 1-61 (61)
32 KOG1259 Nischarin, modulator o 99.2 2.6E-12 5.6E-17 108.3 -1.0 131 3-206 285-416 (490)
33 KOG3207 Beta-tubulin folding c 99.1 1.3E-11 2.8E-16 108.8 -0.3 205 2-227 121-341 (505)
34 KOG3207 Beta-tubulin folding c 99.0 8.1E-11 1.8E-15 103.9 1.3 179 23-225 118-314 (505)
35 COG4886 Leucine-rich repeat (L 99.0 4.2E-10 9.1E-15 103.6 6.1 190 6-248 97-290 (394)
36 KOG0532 Leucine-rich repeat (L 98.9 6.8E-11 1.5E-15 107.6 -1.6 149 3-205 99-250 (722)
37 KOG0531 Protein phosphatase 1, 98.8 7.9E-10 1.7E-14 102.3 -0.7 80 4-85 74-154 (414)
38 KOG1859 Leucine-rich repeat pr 98.7 1.3E-10 2.8E-15 108.6 -7.3 86 140-228 208-295 (1096)
39 KOG0531 Protein phosphatase 1, 98.7 2.3E-09 5.1E-14 99.1 -0.6 82 2-86 95-177 (414)
40 KOG1909 Ran GTPase-activating 98.6 3.2E-09 6.9E-14 91.5 -1.7 182 2-225 92-311 (382)
41 KOG4579 Leucine-rich repeat (L 98.6 2.5E-09 5.3E-14 80.3 -2.4 88 141-230 77-164 (177)
42 KOG1859 Leucine-rich repeat pr 98.6 1.4E-09 3E-14 101.9 -5.8 107 140-250 186-294 (1096)
43 KOG1909 Ran GTPase-activating 98.4 1.9E-07 4.1E-12 80.8 3.4 234 2-247 30-310 (382)
44 PF12799 LRR_4: Leucine Rich r 98.4 2.1E-07 4.6E-12 56.6 1.9 36 27-63 2-37 (44)
45 KOG2982 Uncharacterized conser 98.3 1.3E-07 2.8E-12 80.2 0.6 61 141-201 199-261 (418)
46 KOG4579 Leucine-rich repeat (L 98.3 4E-08 8.7E-13 73.9 -2.8 86 141-227 53-138 (177)
47 KOG1644 U2-associated snRNP A' 98.2 2.2E-06 4.7E-11 68.9 4.8 84 140-223 63-151 (233)
48 PF12799 LRR_4: Leucine Rich r 98.2 1.4E-06 3.1E-11 52.9 2.8 36 166-202 2-37 (44)
49 KOG4658 Apoptotic ATPase [Sign 98.2 1.5E-06 3.3E-11 86.7 4.6 127 4-200 525-653 (889)
50 KOG4658 Apoptotic ATPase [Sign 98.1 2.2E-06 4.7E-11 85.6 3.9 176 2-225 545-730 (889)
51 KOG2120 SCF ubiquitin ligase, 98.1 1.1E-07 2.5E-12 80.5 -4.3 180 2-222 185-373 (419)
52 KOG1644 U2-associated snRNP A' 98.0 6.2E-06 1.3E-10 66.3 4.3 84 140-225 41-126 (233)
53 PRK15386 type III secretion pr 97.8 7.1E-05 1.5E-09 67.8 7.4 60 3-70 53-114 (426)
54 PF13306 LRR_5: Leucine rich r 97.6 0.00011 2.4E-09 56.1 5.0 44 18-63 4-47 (129)
55 KOG3665 ZYG-1-like serine/thre 97.6 7.9E-05 1.7E-09 72.8 4.7 86 140-227 172-265 (699)
56 COG5238 RNA1 Ran GTPase-activa 97.5 3.4E-05 7.4E-10 65.0 1.1 70 2-71 30-113 (388)
57 PF13306 LRR_5: Leucine rich r 97.5 0.00022 4.7E-09 54.5 5.3 118 2-192 12-129 (129)
58 KOG2982 Uncharacterized conser 97.3 0.00032 7E-09 60.0 5.1 183 2-227 71-264 (418)
59 PRK15386 type III secretion pr 97.3 0.00098 2.1E-08 60.6 7.9 54 23-81 49-104 (426)
60 KOG3665 ZYG-1-like serine/thre 97.3 0.0001 2.2E-09 72.0 1.7 84 140-225 147-233 (699)
61 KOG2739 Leucine-rich acidic nu 97.3 0.00014 3.1E-09 60.9 1.9 79 140-218 64-149 (260)
62 COG5238 RNA1 Ran GTPase-activa 97.1 0.00027 5.9E-09 59.7 1.7 87 140-226 213-317 (388)
63 KOG2739 Leucine-rich acidic nu 96.9 0.0006 1.3E-08 57.3 2.1 85 140-226 42-130 (260)
64 PF00560 LRR_1: Leucine Rich R 96.5 0.00075 1.6E-08 34.1 0.3 19 4-23 2-20 (22)
65 KOG2120 SCF ubiquitin ligase, 96.4 0.00018 4E-09 61.5 -3.7 153 2-199 210-373 (419)
66 KOG2123 Uncharacterized conser 96.4 0.00015 3.3E-09 61.4 -4.5 82 140-225 18-101 (388)
67 PF00560 LRR_1: Leucine Rich R 95.9 0.0032 7E-08 31.8 0.8 21 27-48 1-21 (22)
68 TIGR00864 PCC polycystin catio 95.9 0.0051 1.1E-07 67.1 2.8 68 195-267 1-69 (2740)
69 KOG2123 Uncharacterized conser 95.2 0.0038 8.3E-08 53.1 -0.7 81 1-83 40-126 (388)
70 smart00369 LRR_TYP Leucine-ric 95.2 0.012 2.7E-07 30.9 1.5 21 26-46 2-22 (26)
71 smart00370 LRR Leucine-rich re 95.2 0.012 2.7E-07 30.9 1.5 21 26-46 2-22 (26)
72 PF13504 LRR_7: Leucine rich r 94.7 0.015 3.2E-07 27.2 0.9 13 3-15 2-14 (17)
73 smart00369 LRR_TYP Leucine-ric 94.7 0.025 5.3E-07 29.7 1.8 21 165-185 2-22 (26)
74 smart00370 LRR Leucine-rich re 94.7 0.025 5.3E-07 29.7 1.8 21 165-185 2-22 (26)
75 KOG4308 LRR-containing protein 93.7 0.001 2.3E-08 62.3 -8.2 184 4-225 89-303 (478)
76 KOG0473 Leucine-rich repeat pr 93.5 0.0039 8.4E-08 51.7 -4.2 60 140-201 64-123 (326)
77 KOG0473 Leucine-rich repeat pr 92.9 0.0048 1E-07 51.2 -4.5 84 140-225 41-124 (326)
78 PF13516 LRR_6: Leucine Rich r 90.1 0.085 1.8E-06 27.0 -0.1 13 27-39 3-15 (24)
79 KOG3864 Uncharacterized conser 89.7 0.085 1.8E-06 43.0 -0.4 36 26-61 101-136 (221)
80 smart00368 LRR_RI Leucine rich 89.3 0.31 6.8E-06 26.0 1.8 14 2-15 2-15 (28)
81 PF02439 Adeno_E3_CR2: Adenovi 88.3 0.77 1.7E-05 26.3 2.9 26 280-305 6-31 (38)
82 smart00365 LRR_SD22 Leucine-ri 87.9 0.33 7.2E-06 25.5 1.3 9 53-61 5-13 (26)
83 smart00364 LRR_BAC Leucine-ric 87.1 0.48 1.1E-05 24.8 1.5 19 1-20 1-19 (26)
84 KOG4308 LRR-containing protein 86.2 0.0082 1.8E-07 56.3 -9.5 158 27-226 88-276 (478)
85 PF12273 RCR: Chitin synthesis 84.2 0.55 1.2E-05 35.9 1.3 6 300-305 19-24 (130)
86 KOG3763 mRNA export factor TAP 82.1 0.84 1.8E-05 43.0 1.9 65 163-227 216-285 (585)
87 PF08693 SKG6: Transmembrane a 79.4 0.56 1.2E-05 27.3 -0.1 21 282-302 13-33 (40)
88 PF01102 Glycophorin_A: Glycop 78.7 1.5 3.2E-05 32.9 1.9 14 279-292 66-79 (122)
89 TIGR00864 PCC polycystin catio 76.6 1.6 3.4E-05 49.0 2.1 33 171-203 1-33 (2740)
90 PF01102 Glycophorin_A: Glycop 75.3 4.5 9.8E-05 30.3 3.6 23 281-303 64-86 (122)
91 KOG1947 Leucine rich repeat pr 74.7 1.7 3.6E-05 40.9 1.6 35 25-59 187-223 (482)
92 PF12191 stn_TNFRSF12A: Tumour 74.3 1.2 2.6E-05 33.1 0.4 28 286-313 84-111 (129)
93 PF15102 TMEM154: TMEM154 prot 72.3 2.1 4.5E-05 33.0 1.3 16 294-309 72-87 (146)
94 PTZ00382 Variant-specific surf 71.7 2.3 4.9E-05 30.5 1.3 12 283-294 68-79 (96)
95 PF04478 Mid2: Mid2 like cell 70.6 1.4 3E-05 34.1 0.0 22 288-309 58-79 (154)
96 PF07204 Orthoreo_P10: Orthore 70.5 6.1 0.00013 27.7 3.1 31 278-308 39-69 (98)
97 KOG3864 Uncharacterized conser 70.0 1.2 2.5E-05 36.6 -0.5 70 3-76 102-178 (221)
98 PF14575 EphA2_TM: Ephrin type 66.4 7.3 0.00016 26.5 2.9 17 286-302 6-22 (75)
99 PF01034 Syndecan: Syndecan do 66.1 2 4.4E-05 27.9 0.1 21 282-302 14-34 (64)
100 KOG1947 Leucine rich repeat pr 62.5 5.7 0.00012 37.2 2.4 85 140-224 213-307 (482)
101 PF08374 Protocadherin: Protoc 60.9 3 6.5E-05 34.3 0.2 24 278-301 35-58 (221)
102 PF15176 LRR19-TM: Leucine-ric 56.8 12 0.00026 26.8 2.6 17 296-312 32-48 (102)
103 PF01299 Lamp: Lysosome-associ 56.7 10 0.00022 33.6 2.9 31 278-309 271-301 (306)
104 PF05454 DAG1: Dystroglycan (D 55.7 3.8 8.3E-05 35.8 0.0 24 282-305 149-172 (290)
105 PTZ00370 STEVOR; Provisional 54.3 11 0.00024 32.6 2.5 18 296-313 271-288 (296)
106 PF15176 LRR19-TM: Leucine-ric 53.3 21 0.00045 25.6 3.3 33 283-315 16-48 (102)
107 KOG3763 mRNA export factor TAP 52.7 6.7 0.00015 37.2 1.1 63 140-203 217-284 (585)
108 TIGR01478 STEVOR variant surfa 52.0 11 0.00023 32.6 2.1 14 298-311 277-290 (295)
109 PF06697 DUF1191: Protein of u 51.6 22 0.00048 30.8 3.9 40 285-324 218-257 (278)
110 PTZ00046 rifin; Provisional 51.1 14 0.00031 33.1 2.8 18 284-301 319-336 (358)
111 TIGR01477 RIFIN variant surfac 49.7 16 0.00034 32.8 2.8 17 284-300 314-330 (353)
112 PHA03164 hypothetical protein; 48.4 11 0.00024 25.2 1.3 9 255-263 35-43 (88)
113 PF05393 Hum_adeno_E3A: Human 47.9 15 0.00032 25.5 1.9 20 284-303 37-56 (94)
114 KOG4242 Predicted myosin-I-bin 42.4 1.6E+02 0.0035 27.8 8.1 61 3-63 215-281 (553)
115 PF14991 MLANA: Protein melan- 42.3 6.7 0.00014 28.6 -0.5 8 297-304 40-47 (118)
116 PF10725 DUF2517: Protein of u 35.3 48 0.001 21.2 2.6 21 301-321 27-47 (63)
117 PF11770 GAPT: GRB2-binding ad 34.8 25 0.00054 27.2 1.5 16 293-308 22-37 (158)
118 PF12273 RCR: Chitin synthesis 34.5 34 0.00074 25.9 2.3 22 286-307 8-29 (130)
119 PHA02947 S-S bond formation pa 34.3 21 0.00045 29.5 1.1 23 288-310 184-206 (215)
120 PF05568 ASFV_J13L: African sw 34.1 79 0.0017 24.3 4.0 6 317-322 66-71 (189)
121 PHA02662 ORF131 putative membr 33.0 21 0.00046 29.5 1.0 22 292-313 196-217 (226)
122 PRK14762 membrane protein; Pro 31.2 74 0.0016 16.3 2.3 16 283-298 5-20 (27)
123 PF05545 FixQ: Cbb3-type cytoc 31.0 88 0.0019 19.0 3.3 13 297-309 23-35 (49)
124 PF07213 DAP10: DAP10 membrane 30.0 73 0.0016 21.8 3.0 13 281-293 34-46 (79)
125 PF03302 VSP: Giardia variant- 28.0 24 0.00053 32.6 0.6 22 281-302 367-388 (397)
126 smart00367 LRR_CC Leucine-rich 27.3 49 0.0011 16.8 1.5 12 50-61 2-13 (26)
127 PF11980 DUF3481: Domain of un 26.7 51 0.0011 22.7 1.8 12 281-292 16-27 (87)
128 PF02480 Herpes_gE: Alphaherpe 26.4 22 0.00047 33.3 0.0 8 302-309 375-382 (439)
129 PF12877 DUF3827: Domain of un 26.4 44 0.00096 32.5 2.0 27 277-303 266-292 (684)
130 PF15102 TMEM154: TMEM154 prot 26.2 30 0.00065 26.8 0.7 29 283-311 58-86 (146)
131 PF05663 DUF809: Protein of un 24.4 1.2E+02 0.0025 21.5 3.3 20 312-331 50-69 (138)
132 PF14316 DUF4381: Domain of un 24.1 1.6E+02 0.0034 22.8 4.5 17 297-313 36-52 (146)
133 smart00082 LRRCT Leucine rich 24.0 27 0.00058 21.1 0.1 37 222-264 1-37 (51)
134 PF14610 DUF4448: Protein of u 23.9 31 0.00068 28.1 0.5 16 288-303 166-181 (189)
135 PF08374 Protocadherin: Protoc 23.3 59 0.0013 26.9 1.9 29 276-304 36-64 (221)
136 PHA03271 envelope glycoprotein 23.2 61 0.0013 29.8 2.1 8 251-258 420-427 (490)
137 PF15050 SCIMP: SCIMP protein 22.8 1E+02 0.0022 22.9 2.8 15 288-302 17-31 (133)
138 PF06667 PspB: Phage shock pro 22.7 94 0.002 21.1 2.5 8 300-307 23-30 (75)
139 PF11770 GAPT: GRB2-binding ad 22.5 73 0.0016 24.7 2.1 29 284-312 10-38 (158)
140 PF02158 Neuregulin: Neureguli 22.4 29 0.00063 31.4 0.0 15 287-301 14-28 (404)
141 TIGR00847 ccoS cytochrome oxid 22.0 1.3E+02 0.0027 18.8 2.7 18 286-303 8-25 (51)
142 PF14584 DUF4446: Protein of u 21.4 1E+02 0.0022 24.2 2.9 12 304-315 25-36 (151)
143 PF05725 FNIP: FNIP Repeat; I 21.2 1.3E+02 0.0028 17.6 2.7 31 26-58 12-42 (44)
144 PF03597 CcoS: Cytochrome oxid 20.4 1.4E+02 0.0029 18.0 2.6 18 286-303 7-24 (45)
145 PF05454 DAG1: Dystroglycan (D 20.4 34 0.00073 30.0 0.0 37 277-313 141-177 (290)
146 PF10577 UPF0560: Uncharacteri 20.3 1.5E+02 0.0032 29.9 4.3 7 164-170 148-154 (807)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.93 E-value=3.7e-25 Score=225.15 Aligned_cols=243 Identities=34% Similarity=0.527 Sum_probs=179.3
Q ss_pred CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhcc---ccccc
Q 039997 2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNL---LFWKV 78 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L---~~L~~ 78 (333)
++|+.||+++|.+++..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|++++..|..+..+ ..|++
T Consensus 356 ~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 435 (968)
T PLN00113 356 NNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDI 435 (968)
T ss_pred CCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEEC
Confidence 467888888888888888888888888888888888887888888888888888888888877777666544 45556
Q ss_pred cCCccccccccCCCCcccccccccCCCCCcCCCCCCCCc------cccceEEEEeeccccc-cchhh--hhccccEEECC
Q 039997 79 GNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRT------LDTQVVVNFMTKNRYE-SYKGV--ILEYMAGLDLS 149 (333)
Q Consensus 79 ~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~-~~~~~--~l~~L~~L~Ls 149 (333)
++|.+.+.......... ....+.+..+.+.. .........+..+.+. ..+.. .+++|+.|+++
T Consensus 436 s~N~l~~~~~~~~~~l~--------~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls 507 (968)
T PLN00113 436 SNNNLQGRINSRKWDMP--------SLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLS 507 (968)
T ss_pred cCCcccCccChhhccCC--------CCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECc
Confidence 66666553321110000 00001111110000 0011222233333322 11111 16789999999
Q ss_pred CCcccccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEcccCcCcccC
Q 039997 150 SNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPI 228 (333)
Q Consensus 150 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~ 228 (333)
+|++.+..|..+.++++|+.|+|++|.+++..|..|+.+++|+.|++++|++++..| .+..+..|+.+++++|++.+.+
T Consensus 508 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~ 587 (968)
T PLN00113 508 ENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSL 587 (968)
T ss_pred CCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeC
Confidence 999999999999999999999999999999999999999999999999999998888 8899999999999999999999
Q ss_pred CCCccccccCccccCCCCCCCCCC
Q 039997 229 PDKEQFSTFDESSYRGNLNLCCPP 252 (333)
Q Consensus 229 ~~~~~~~~l~~~~~~~n~~~c~~~ 252 (333)
|....+..+...++.+|+..|+.+
T Consensus 588 p~~~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 588 PSTGAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred CCcchhcccChhhhcCCccccCCc
Confidence 988888888888899999999754
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.90 E-value=3.3e-23 Score=210.91 Aligned_cols=252 Identities=31% Similarity=0.447 Sum_probs=169.3
Q ss_pred CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhh---ccccccc
Q 039997 2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCIT---NLLFWKV 78 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~---~L~~L~~ 78 (333)
++|++|++++|.+++..|..+.++++|+.|++++|.+++..|..+..+++|+.|++++|++.+..|..+. +++.|++
T Consensus 308 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l 387 (968)
T PLN00113 308 QNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLIL 387 (968)
T ss_pred CCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEEC
Confidence 4677888888888777777788888888888888888777777777788888888888877766666553 3445555
Q ss_pred cCCccccccccC-C-CCccccccc--------------ccCCCCCcCCCCCCCCcc-------ccceEEEEeeccccc-c
Q 039997 79 GNGDLYGLVERG-R-DFDLEDIYN--------------YYNSTVPLSLDRSDTRTL-------DTQVVVNFMTKNRYE-S 134 (333)
Q Consensus 79 ~~n~~~~~~~~~-~-~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~-~ 134 (333)
.+|.+.+..... . ...+..... .......+.++.+.+... ...+....+..+.+. .
T Consensus 388 ~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~ 467 (968)
T PLN00113 388 FSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGG 467 (968)
T ss_pred cCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeee
Confidence 555544321100 0 000000000 000011111111111100 011111222222211 1
Q ss_pred chhh-hhccccEEECCCCcccccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCC
Q 039997 135 YKGV-ILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELH 212 (333)
Q Consensus 135 ~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~ 212 (333)
.+.. ...+|+.|++++|++++..|..|.++++|+.|+|++|++++..|..+..+++|++|++++|.+++..| .+..++
T Consensus 468 ~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 547 (968)
T PLN00113 468 LPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMP 547 (968)
T ss_pred cCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcc
Confidence 1111 14679999999999999999999999999999999999999999999999999999999999999888 899999
Q ss_pred CCCEEEcccCcCcccCCCC-ccccccCccccCCCCCCCCCCC
Q 039997 213 SLSKFDVSYNNLSCPIPDK-EQFSTFDESSYRGNLNLCCPPI 253 (333)
Q Consensus 213 ~L~~L~l~~N~l~~~~~~~-~~~~~l~~~~~~~n~~~c~~~~ 253 (333)
+|+.|++++|.+++..|.. ..+..+..+++.+|+..+..|.
T Consensus 548 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~ 589 (968)
T PLN00113 548 VLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS 589 (968)
T ss_pred cCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCC
Confidence 9999999999999877754 4566778888888887765443
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.89 E-value=4.5e-24 Score=192.09 Aligned_cols=265 Identities=20% Similarity=0.195 Sum_probs=144.5
Q ss_pred CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCC---CCCChhhhccccccc
Q 039997 2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLN---GSIPSCITNLLFWKV 78 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~---~~~p~~l~~L~~L~~ 78 (333)
.++++|+|++|+|+...-..|.++.+|.+|.|+.|+|+.+.+.+|..|++|+.|||..|+|. +...+++.+|++|.+
T Consensus 173 ~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlkl 252 (873)
T KOG4194|consen 173 VNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKL 252 (873)
T ss_pred CCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhh
Confidence 35677777777777777777777777777777777777777777777788888888777765 223455566667777
Q ss_pred cCCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccc--hhh-hhccccEEECCCCcccc
Q 039997 79 GNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESY--KGV-ILEYMAGLDLSSNELTG 155 (333)
Q Consensus 79 ~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~l~~L~~L~Ls~n~l~~ 155 (333)
..|++..+.+...+...+........+....+....+..+....+.. +..+.+..+ .++ -.++|+.|||++|+|+.
T Consensus 253 qrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~-lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~ 331 (873)
T KOG4194|consen 253 QRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLD-LSYNAIQRIHIDSWSFTQKLKELDLSSNRITR 331 (873)
T ss_pred hhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhc-cchhhhheeecchhhhcccceeEecccccccc
Confidence 77776665544333322221111111111111111111111111111 111111110 011 14556666666666666
Q ss_pred cCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcc---------------------------cCCCC-C
Q 039997 156 DISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKL---------------------------NGQIP-Q 207 (333)
Q Consensus 156 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l---------------------------~~~~~-~ 207 (333)
..+..|..+..|+.|+|++|+++.+..++|..+++|+.|||++|.+ ..+.. +
T Consensus 332 l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krA 411 (873)
T KOG4194|consen 332 LDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRA 411 (873)
T ss_pred CChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhh
Confidence 6666666666666666666666555555555555555555555544 44444 5
Q ss_pred CCCCCCCCEEEcccCcCcccCCCCccccccCccccCCCCCCCCC----------------CCCCCCCCCCCcCCCC
Q 039997 208 LTELHSLSKFDVSYNNLSCPIPDKEQFSTFDESSYRGNLNLCCP----------------PINKSCTNLPELLETS 267 (333)
Q Consensus 208 ~~~l~~L~~L~l~~N~l~~~~~~~~~~~~l~~~~~~~n~~~c~~----------------~~~~~c~~~~~~~~~~ 267 (333)
|.+++.|+.|||.+|++...-+.+..--.++++.+..-.++|+. .....|.+|+.+.+..
T Consensus 412 fsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCDCql~Wl~qWl~~~~lq~sv~a~CayPe~Lad~~ 487 (873)
T KOG4194|consen 412 FSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNSSSFLCDCQLKWLAQWLYRRKLQSSVIAKCAYPEPLADQS 487 (873)
T ss_pred hccCcccceecCCCCcceeecccccccchhhhhhhcccceEEeccHHHHHHHHHhcccccceeeeccCCcccccce
Confidence 55566666666666665544443322224455555666667743 2345688888877663
No 4
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.87 E-value=5.5e-23 Score=177.29 Aligned_cols=248 Identities=17% Similarity=0.135 Sum_probs=166.2
Q ss_pred CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCC-CcCCCCCChhhhccccccc--
Q 039997 2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSH-NRLNGSIPSCITNLLFWKV-- 78 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~-N~l~~~~p~~l~~L~~L~~-- 78 (333)
+.-..++|..|.|+.+.|.+|+.+.+|+.||||+|+|+.|.|++|.+|++|..|-+.+ |+|+...-+.|..|..|..
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 4556899999999988899999999999999999999999999999999998887665 9988433334444332222
Q ss_pred -------------------------cCCcccccccc-CCCCccc-------cccc------c---cCCCCCcCCCCCCCC
Q 039997 79 -------------------------GNGDLYGLVER-GRDFDLE-------DIYN------Y---YNSTVPLSLDRSDTR 116 (333)
Q Consensus 79 -------------------------~~n~~~~~~~~-~~~~~~~-------~~~~------~---~~~~~~~~~~~~~~~ 116 (333)
-+|.+..+... +...... ..+. + +....++..+.....
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~ 226 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV 226 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence 22222222110 0000000 0000 0 000011111100000
Q ss_pred ccc--cceEEEEe------------------eccccccchh---hhhccccEEECCCCcccccCCccccCccccceeecc
Q 039997 117 TLD--TQVVVNFM------------------TKNRYESYKG---VILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLS 173 (333)
Q Consensus 117 ~~~--~~~~~~~~------------------~~~~~~~~~~---~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 173 (333)
.-. ........ ........+. ..+++|+.|+|++|+++++.+.+|.++..+++|.|.
T Consensus 227 ~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~ 306 (498)
T KOG4237|consen 227 SPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLT 306 (498)
T ss_pred chHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcC
Confidence 000 00000000 0000011110 017899999999999999999999999999999999
Q ss_pred cccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEcccCcCcccCCCCccccccCccccCCCCCCCC
Q 039997 174 HNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPIPDKEQFSTFDESSYRGNLNLCC 250 (333)
Q Consensus 174 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~l~~~~~~~n~~~c~ 250 (333)
+|+|..+....|.++..|+.|+|.+|+|+.+.| .|..+..|..+.+-.|+|.|.|.-++.-.|++.....+++ .|.
T Consensus 307 ~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~-~Cq 383 (498)
T KOG4237|consen 307 RNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNP-RCQ 383 (498)
T ss_pred cchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCC-CCC
Confidence 999998888999999999999999999999999 9999999999999999999999777655666655555554 354
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.86 E-value=5e-23 Score=185.39 Aligned_cols=238 Identities=25% Similarity=0.260 Sum_probs=156.6
Q ss_pred cccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhcccccc---cc
Q 039997 3 ALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWK---VG 79 (333)
Q Consensus 3 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~~L~---~~ 79 (333)
.|+.||||.|.|+.+...+|..-.++++|+|++|.|+.+..+.|.++.+|..|.|+.|+++...+..|.+|+.|+ +-
T Consensus 150 alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLn 229 (873)
T KOG4194|consen 150 ALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLN 229 (873)
T ss_pred hhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcc
Confidence 466677777777755555666666777777777777777777777777777777777777755555555444333 33
Q ss_pred CCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceE-------EEEeeccccccch-hhh--hccccEEECC
Q 039997 80 NGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVV-------VNFMTKNRYESYK-GVI--LEYMAGLDLS 149 (333)
Q Consensus 80 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~-~~~--l~~L~~L~Ls 149 (333)
.|.+.-+. ... +....+...+.+.......+....+ ...+.-++..... |+. +..|+.|+||
T Consensus 230 rN~irive-~lt-------FqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS 301 (873)
T KOG4194|consen 230 RNRIRIVE-GLT-------FQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLS 301 (873)
T ss_pred ccceeeeh-hhh-------hcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccc
Confidence 33332210 001 1111122222222222222222111 1122223322222 111 7889999999
Q ss_pred CCcccccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEcccCcCcccC
Q 039997 150 SNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPI 228 (333)
Q Consensus 150 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~ 228 (333)
+|.|..+.++.-...++|++|+|+.|+|+...+++|..+..|+.|+|++|+++.+.. .|..+.+|++|||+.|.++..+
T Consensus 302 ~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~I 381 (873)
T KOG4194|consen 302 YNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCI 381 (873)
T ss_pred hhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEE
Confidence 999999999888888999999999999999999999999999999999999998888 8889999999999999998665
Q ss_pred CCC----ccccccCccccCCCCCC
Q 039997 229 PDK----EQFSTFDESSYRGNLNL 248 (333)
Q Consensus 229 ~~~----~~~~~l~~~~~~~n~~~ 248 (333)
.+. .-++.++.+.+.||...
T Consensus 382 EDaa~~f~gl~~LrkL~l~gNqlk 405 (873)
T KOG4194|consen 382 EDAAVAFNGLPSLRKLRLTGNQLK 405 (873)
T ss_pred ecchhhhccchhhhheeecCceee
Confidence 443 13445566667777543
No 6
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.79 E-value=1.5e-21 Score=150.74 Aligned_cols=159 Identities=26% Similarity=0.397 Sum_probs=114.7
Q ss_pred CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhccccccccCC
Q 039997 2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGNG 81 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~~L~~~~n 81 (333)
++++.|-||+|.++ .+|..++.+.+|+.|++++|+|+ ..|.+++.+++|+.|+++-|++. ..|++|++++.
T Consensus 33 s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~------ 103 (264)
T KOG0617|consen 33 SNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPA------ 103 (264)
T ss_pred hhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCch------
Confidence 45677899999999 78889999999999999999998 66778899999999999999998 88888887644
Q ss_pred ccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccc-cCCcc
Q 039997 82 DLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTG-DISSE 160 (333)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~ 160 (333)
|+.|||++|++.+ ..|+.
T Consensus 104 -------------------------------------------------------------levldltynnl~e~~lpgn 122 (264)
T KOG0617|consen 104 -------------------------------------------------------------LEVLDLTYNNLNENSLPGN 122 (264)
T ss_pred -------------------------------------------------------------hhhhhccccccccccCCcc
Confidence 4556666666543 44555
Q ss_pred ccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEEEcccCcCcccCCCC
Q 039997 161 IGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCPIPDK 231 (333)
Q Consensus 161 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 231 (333)
|..+..|+.|+|++|.+. ..|...+++++|+.|.+++|.+-.++..++.+..|+.|.+++|+++-..|+.
T Consensus 123 ff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~vlppel 192 (264)
T KOG0617|consen 123 FFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLTVLPPEL 192 (264)
T ss_pred hhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceeeecChhh
Confidence 666666666666666666 4455566666666666666666544446666666666666666666555543
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.75 E-value=1.5e-19 Score=164.65 Aligned_cols=250 Identities=24% Similarity=0.242 Sum_probs=148.6
Q ss_pred CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCCh--hhhcccccccc
Q 039997 2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPS--CITNLLFWKVG 79 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~--~l~~L~~L~~~ 79 (333)
..|.+||||+|.++ ..|..+..-+++-+|+||+|+|..|+...|-+|.-|-+||||+|++....|+ -+.+|++|.++
T Consensus 103 ~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls 181 (1255)
T KOG0444|consen 103 KDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLS 181 (1255)
T ss_pred ccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcC
Confidence 46889999999999 7899999999999999999999988888899999999999999999944443 35677889999
Q ss_pred CCccccccc--cCCCCccccccc----ccCCCCCcCCCC-----------CCCCccc------cceEEEEeeccccccch
Q 039997 80 NGDLYGLVE--RGRDFDLEDIYN----YYNSTVPLSLDR-----------SDTRTLD------TQVVVNFMTKNRYESYK 136 (333)
Q Consensus 80 ~n~~~~~~~--~~~~~~~~~~~~----~~~~~~~~~~~~-----------~~~~~~~------~~~~~~~~~~~~~~~~~ 136 (333)
+|.+.+..- .+....+...-. ....+.|.+++. ..+..+. ..+....++.+.+..+.
T Consensus 182 ~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~ 261 (1255)
T KOG0444|consen 182 NNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELN 261 (1255)
T ss_pred CChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeee
Confidence 998755311 111111111100 011111222211 1111000 00001111222222222
Q ss_pred hhh--hccccEEECCCCcccccCCccccCccccceeecccccCCC-CchHHHhCCCCCCEEeccCCcccCCCCCCCCCCC
Q 039997 137 GVI--LEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSG-SIPESFSNLKMIESLDLSHNKLNGQIPQLTELHS 213 (333)
Q Consensus 137 ~~~--l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~ 213 (333)
... -.+|++|++|.|+++ ..|.+++.++.|+.|++.+|+++- -+|..++++.+|+.+..++|.+.-++..++....
T Consensus 262 ~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~k 340 (1255)
T KOG0444|consen 262 MTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVK 340 (1255)
T ss_pred ccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHH
Confidence 111 234444555555554 455555556666666666665541 1345555666666666666665544446666677
Q ss_pred CCEEEcccCcCcccCCCCccccccCccccCCCCCCCCCCC
Q 039997 214 LSKFDVSYNNLSCPIPDKEQFSTFDESSYRGNLNLCCPPI 253 (333)
Q Consensus 214 L~~L~l~~N~l~~~~~~~~~~~~l~~~~~~~n~~~c~~~~ 253 (333)
|+.|.++.|++...+.....+..++.+++..|+.+.-+|.
T Consensus 341 L~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 341 LQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred HHHhcccccceeechhhhhhcCCcceeeccCCcCccCCCC
Confidence 7777777777765544445667777888888888776553
No 8
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.74 E-value=3.2e-19 Score=154.17 Aligned_cols=241 Identities=19% Similarity=0.187 Sum_probs=157.7
Q ss_pred EECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhccc---cccc-cCCc
Q 039997 7 LDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLL---FWKV-GNGD 82 (333)
Q Consensus 7 L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~---~L~~-~~n~ 82 (333)
.|-++-+++ .+|..+- +....++|..|+|+.+.|++|+.+++|+.|||++|.|+..-|++|..|. .|.+ .+|+
T Consensus 51 VdCr~~GL~-eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~Nk 127 (498)
T KOG4237|consen 51 VDCRGKGLT-EVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNK 127 (498)
T ss_pred EEccCCCcc-cCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCc
Confidence 455666666 5676665 5778899999999999999999999999999999999988898887766 3333 5588
Q ss_pred cccccccCCCCcccccccccCCC----------------CCcCCCCCCCCccccceE-------EEEeeccc------cc
Q 039997 83 LYGLVERGRDFDLEDIYNYYNST----------------VPLSLDRSDTRTLDTQVV-------VNFMTKNR------YE 133 (333)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~-------~~~~~~~~------~~ 133 (333)
++.++...............+.. ..+++....+.......+ ......+. +.
T Consensus 128 I~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~ 207 (498)
T KOG4237|consen 128 ITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLP 207 (498)
T ss_pred hhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccc
Confidence 87765433322222111111111 001111111100000000 00000110 00
Q ss_pred -----------cchhhh--------------------hccccEE---ECCCCcccccCC-ccccCccccceeecccccCC
Q 039997 134 -----------SYKGVI--------------------LEYMAGL---DLSSNELTGDIS-SEIGDLRNIHGLNLSHNFLS 178 (333)
Q Consensus 134 -----------~~~~~~--------------------l~~L~~L---~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~ 178 (333)
++.|.. ...++.+ ..+.+...++.| ..|..+++|++|+|++|+|+
T Consensus 208 wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~ 287 (498)
T KOG4237|consen 208 WLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKIT 287 (498)
T ss_pred hhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccc
Confidence 011100 1111111 112222333444 56889999999999999999
Q ss_pred CCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEcccCcCcccCCCC-ccccccCccccCCCCCCCC
Q 039997 179 GSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPIPDK-EQFSTFDESSYRGNLNLCC 250 (333)
Q Consensus 179 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~-~~~~~l~~~~~~~n~~~c~ 250 (333)
.+.+.+|++..+++.|.|..|++..+.. +|.++..|+.|+|.+|++++.-|.. .....+.++.+-+||+.|+
T Consensus 288 ~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~Cn 361 (498)
T KOG4237|consen 288 RIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCN 361 (498)
T ss_pred hhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCc
Confidence 9999999999999999999999998888 9999999999999999999987765 2444566777889999995
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.66 E-value=3.6e-18 Score=155.71 Aligned_cols=102 Identities=25% Similarity=0.290 Sum_probs=71.5
Q ss_pred hccccEEECCCCcccccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEEEc
Q 039997 140 LEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDV 219 (333)
Q Consensus 140 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l 219 (333)
+.+|..+|+|.|++. ..|+.+.++++|+.|+||+|+|+ ......+...+|+.|++|+|+++.++..++.+++|+.|.+
T Consensus 221 l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~ 298 (1255)
T KOG0444|consen 221 LHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYA 298 (1255)
T ss_pred hhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHh
Confidence 667777888888887 77778888888888888888887 3344455667778888888888865557777888888888
Q ss_pred ccCcCc--ccCCCCccccccCccccC
Q 039997 220 SYNNLS--CPIPDKEQFSTFDESSYR 243 (333)
Q Consensus 220 ~~N~l~--~~~~~~~~~~~l~~~~~~ 243 (333)
.+|.++ |.+...+.+..+......
T Consensus 299 n~NkL~FeGiPSGIGKL~~Levf~aa 324 (1255)
T KOG0444|consen 299 NNNKLTFEGIPSGIGKLIQLEVFHAA 324 (1255)
T ss_pred ccCcccccCCccchhhhhhhHHHHhh
Confidence 777654 554444455444444433
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.66 E-value=2.1e-18 Score=149.50 Aligned_cols=236 Identities=23% Similarity=0.248 Sum_probs=141.8
Q ss_pred cccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhcc---cccccc
Q 039997 3 ALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNL---LFWKVG 79 (333)
Q Consensus 3 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L---~~L~~~ 79 (333)
.|.+|++.+|.++ ..|.+++.+..++.++.++|+++ ..|+.+..+.+|..|+.++|++. ..|+.++.+ ..++-.
T Consensus 69 ~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~ 145 (565)
T KOG0472|consen 69 CLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDAT 145 (565)
T ss_pred ceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhcc
Confidence 3556666666666 56666666666666777777666 55556666667777777777666 444444332 233334
Q ss_pred CCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhh--hccccEEECCCCcccccC
Q 039997 80 NGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVI--LEYMAGLDLSSNELTGDI 157 (333)
Q Consensus 80 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~L~~L~Ls~n~l~~~~ 157 (333)
+|.+...++......... .....+.....+...... -..++..+...+.+..++... +.+|+.|+|..|++. ..
T Consensus 146 ~N~i~slp~~~~~~~~l~-~l~~~~n~l~~l~~~~i~--m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~-~l 221 (565)
T KOG0472|consen 146 NNQISSLPEDMVNLSKLS-KLDLEGNKLKALPENHIA--MKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIR-FL 221 (565)
T ss_pred ccccccCchHHHHHHHHH-HhhccccchhhCCHHHHH--HHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccc-cC
Confidence 444444332221110000 000000000000000000 000111112223333333322 677888888888888 55
Q ss_pred CccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEEEcccCcCcccCCCCcccccc
Q 039997 158 SSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCPIPDKEQFSTF 237 (333)
Q Consensus 158 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~l 237 (333)
| .|.++..|++++++.|+|.-.+.+...+++++.+|||++|+++..+..++-+.+|+.||+++|.+++..+..... ++
T Consensus 222 P-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL 299 (565)
T KOG0472|consen 222 P-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HL 299 (565)
T ss_pred C-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccCCcccccc-ee
Confidence 5 688888899999999998855556666889999999999999987778888888999999999999887777666 77
Q ss_pred CccccCCCCC
Q 039997 238 DESSYRGNLN 247 (333)
Q Consensus 238 ~~~~~~~n~~ 247 (333)
+.+.+.|||.
T Consensus 300 ~~L~leGNPl 309 (565)
T KOG0472|consen 300 KFLALEGNPL 309 (565)
T ss_pred eehhhcCCch
Confidence 7777778864
No 11
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.63 E-value=9.7e-18 Score=158.71 Aligned_cols=239 Identities=24% Similarity=0.291 Sum_probs=117.6
Q ss_pred CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCCh---hhhccccccc
Q 039997 2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPS---CITNLLFWKV 78 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~---~l~~L~~L~~ 78 (333)
.+|+++|+|+|.++ .+|+.+..+.+|+.++..+|++. ..|.......+|+.|+..+|.+. .+|+ .+..++.|++
T Consensus 241 ~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL 317 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDL 317 (1081)
T ss_pred ccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeee
Confidence 45667777777776 45566666667777776666664 44444444444555555555444 2222 2334445555
Q ss_pred cCCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccc-----cccchhhhhccccEEECCCCcc
Q 039997 79 GNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNR-----YESYKGVILEYMAGLDLSSNEL 153 (333)
Q Consensus 79 ~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~L~~L~Ls~n~l 153 (333)
..|.+...++..............+....+....+.-......++...+..+. +..+.+ ...|+.|+|++|++
T Consensus 318 ~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~--~~hLKVLhLsyNrL 395 (1081)
T KOG0618|consen 318 QSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVN--FKHLKVLHLSYNRL 395 (1081)
T ss_pred hhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhcc--ccceeeeeeccccc
Confidence 55544443331111000000001111111100000000000000000011111 111111 56677777777777
Q ss_pred cccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEEEcccCcCcccC-CCCc
Q 039997 154 TGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCPI-PDKE 232 (333)
Q Consensus 154 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~-~~~~ 232 (333)
...+...+.++..|++|+||+|+++ .+|.....++.|++|...+|++...+ .+..+++|+.+|++.|.++... +...
T Consensus 396 ~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~ 473 (1081)
T KOG0618|consen 396 NSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEAL 473 (1081)
T ss_pred ccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccchhhhhhhhhhC
Confidence 7666666777777777777777777 44566666666666666666666433 5556666777777766665332 2222
Q ss_pred cccccCccccCCCCC
Q 039997 233 QFSTFDESSYRGNLN 247 (333)
Q Consensus 233 ~~~~l~~~~~~~n~~ 247 (333)
..+.++.+++.||.+
T Consensus 474 p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 474 PSPNLKYLDLSGNTR 488 (1081)
T ss_pred CCcccceeeccCCcc
Confidence 225566666666654
No 12
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.62 E-value=1.7e-15 Score=146.50 Aligned_cols=81 Identities=25% Similarity=0.152 Sum_probs=57.2
Q ss_pred ccccEEECCCCcccccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEEEcc
Q 039997 141 EYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVS 220 (333)
Q Consensus 141 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~ 220 (333)
.+|+.|++++|+++++ |.. .++|+.|++++|+++++ |.. ..+|+.|++++|.++.++..+..+++|+.++++
T Consensus 382 ~~L~~LdLs~N~Lt~L-P~l---~s~L~~LdLS~N~LssI-P~l---~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs 453 (788)
T PRK15387 382 SGLKELIVSGNRLTSL-PVL---PSELKELMVSGNRLTSL-PML---PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLE 453 (788)
T ss_pred cccceEEecCCcccCC-CCc---ccCCCEEEccCCcCCCC-Ccc---hhhhhhhhhccCcccccChHHhhccCCCeEECC
Confidence 4577777777777743 322 25677888888888753 332 245777888888888655477788888888999
Q ss_pred cCcCcccCC
Q 039997 221 YNNLSCPIP 229 (333)
Q Consensus 221 ~N~l~~~~~ 229 (333)
+|++++..+
T Consensus 454 ~N~Ls~~~~ 462 (788)
T PRK15387 454 GNPLSERTL 462 (788)
T ss_pred CCCCCchHH
Confidence 888886644
No 13
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.59 E-value=3.1e-17 Score=126.88 Aligned_cols=162 Identities=24% Similarity=0.399 Sum_probs=138.9
Q ss_pred ccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhccccccccCCccccccccCCCCcccccccc
Q 039997 22 INEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNY 101 (333)
Q Consensus 22 ~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~~L~~~~n~~~~~~~~~~~~~~~~~~~~ 101 (333)
+..+.+++.|.||+|+++ ..|..+..|.+|+.|++++|+|+ .+|..+.+
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~iss----------------------------- 77 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISS----------------------------- 77 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhh-----------------------------
Confidence 345688899999999999 55566899999999999999998 67766655
Q ss_pred cCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCccccCccccceeecccccCCC-C
Q 039997 102 YNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSG-S 180 (333)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~ 180 (333)
++.|+.|+++-|++. ..|..|+.+|.|+.|||+.|.+.. .
T Consensus 78 --------------------------------------l~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~ 118 (264)
T KOG0617|consen 78 --------------------------------------LPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENS 118 (264)
T ss_pred --------------------------------------chhhhheecchhhhh-cCccccCCCchhhhhhcccccccccc
Confidence 466788999999998 889999999999999999999974 4
Q ss_pred chHHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEEEcccCcCcccCCCCccccccCccccCCCCCCCCCCC
Q 039997 181 IPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCPIPDKEQFSTFDESSYRGNLNLCCPPI 253 (333)
Q Consensus 181 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~l~~~~~~~n~~~c~~~~ 253 (333)
.|+.|..|+.|+.|.|++|.+..+++.++.+.+|+.|.++.|.+-....+...+..++++...||....-+|+
T Consensus 119 lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~vlppe 191 (264)
T KOG0617|consen 119 LPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLTVLPPE 191 (264)
T ss_pred CCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceeeecChh
Confidence 7888889999999999999999888899999999999999999876666667788888889999976655554
No 14
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.59 E-value=2e-15 Score=146.65 Aligned_cols=79 Identities=23% Similarity=0.353 Sum_probs=43.5
Q ss_pred CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhh-hccccccccC
Q 039997 2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCI-TNLLFWKVGN 80 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l-~~L~~L~~~~ 80 (333)
++|+.|+|++|.|+ .+|..+. ++|++|++++|+++.+ |..+. .+|+.|++++|.+. .+|..+ .+|+.|++++
T Consensus 199 ~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~LtsL-P~~l~--~~L~~L~Ls~N~L~-~LP~~l~s~L~~L~Ls~ 271 (754)
T PRK15370 199 EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLTSI-PATLP--DTIQEMELSINRIT-ELPERLPSALQSLDLFH 271 (754)
T ss_pred cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccccC-Chhhh--ccccEEECcCCccC-cCChhHhCCCCEEECcC
Confidence 45667777777776 3454443 4666677776666633 33332 35666666666655 334333 2455555555
Q ss_pred Ccccccc
Q 039997 81 GDLYGLV 87 (333)
Q Consensus 81 n~~~~~~ 87 (333)
|++..++
T Consensus 272 N~L~~LP 278 (754)
T PRK15370 272 NKISCLP 278 (754)
T ss_pred CccCccc
Confidence 5555443
No 15
>PLN03150 hypothetical protein; Provisional
Probab=99.58 E-value=4.9e-15 Score=142.84 Aligned_cols=117 Identities=34% Similarity=0.578 Sum_probs=103.8
Q ss_pred cccEEECCCCcccccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEcc
Q 039997 142 YMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVS 220 (333)
Q Consensus 142 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~ 220 (333)
.++.|+|++|.+.+..|..+..+++|+.|+|++|.+++.+|..++.+++|+.|+|++|.+++..| .+..+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 37889999999999999999999999999999999999999999999999999999999999888 89999999999999
Q ss_pred cCcCcccCCCCc--cccccCccccCCCCCCCCCCCCCCCC
Q 039997 221 YNNLSCPIPDKE--QFSTFDESSYRGNLNLCCPPINKSCT 258 (333)
Q Consensus 221 ~N~l~~~~~~~~--~~~~l~~~~~~~n~~~c~~~~~~~c~ 258 (333)
+|.++|..|... ........++.+|+.+|+.|....|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 999999888642 22334566788999999887767775
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.57 E-value=2.2e-14 Score=138.84 Aligned_cols=101 Identities=20% Similarity=0.073 Sum_probs=48.8
Q ss_pred ccccEEECCCCcccccCCccccCccccceeecccccCCCCchHHHh-----------------CCCCCCEEeccCCcccC
Q 039997 141 EYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFS-----------------NLKMIESLDLSHNKLNG 203 (333)
Q Consensus 141 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-----------------~l~~L~~L~L~~N~l~~ 203 (333)
.+|+.|+|++|+|++++ .. .++|+.|++++|+|+.+ |.... ..++|+.|++++|+++.
T Consensus 342 ~~Lq~LdLS~N~Ls~LP-~l---p~~L~~L~Ls~N~L~~L-P~l~~~L~~LdLs~N~Lt~LP~l~s~L~~LdLS~N~Lss 416 (788)
T PRK15387 342 SGLQELSVSDNQLASLP-TL---PSELYKLWAYNNRLTSL-PALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTS 416 (788)
T ss_pred cccceEecCCCccCCCC-CC---CcccceehhhccccccC-cccccccceEEecCCcccCCCCcccCCCEEEccCCcCCC
Confidence 46777777777777433 22 12344444444444422 21110 12344455555555544
Q ss_pred CCCCCCCCCCCCEEEcccCcCcccCCCCccccccCccccCCCCCCC
Q 039997 204 QIPQLTELHSLSKFDVSYNNLSCPIPDKEQFSTFDESSYRGNLNLC 249 (333)
Q Consensus 204 ~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~l~~~~~~~n~~~c 249 (333)
++.. ..+|+.|++++|.++..+.....+..+..+++.+|+...
T Consensus 417 IP~l---~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~ 459 (788)
T PRK15387 417 LPML---PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSE 459 (788)
T ss_pred CCcc---hhhhhhhhhccCcccccChHHhhccCCCeEECCCCCCCc
Confidence 3221 124555566666655322222344556666777777654
No 17
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.57 E-value=1.1e-16 Score=139.08 Aligned_cols=193 Identities=24% Similarity=0.292 Sum_probs=121.6
Q ss_pred cccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhccccccccC--
Q 039997 3 ALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGN-- 80 (333)
Q Consensus 3 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~~L~~~~-- 80 (333)
+|+.++.++|.+. ..|+.++.+-.++.++..+|+|+ -.|+.+..+.+|..|++.+|++....|. .-+|+.|...+
T Consensus 115 ~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~-~i~m~~L~~ld~~ 191 (565)
T KOG0472|consen 115 SLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPEN-HIAMKRLKHLDCN 191 (565)
T ss_pred hhhhhhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHH-HHHHHHHHhcccc
Confidence 4556666666666 45666666666666666666666 4444555666666666666666533332 22243333322
Q ss_pred -CccccccccCCC-CcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCC
Q 039997 81 -GDLYGLVERGRD-FDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDIS 158 (333)
Q Consensus 81 -n~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 158 (333)
|.+..+++.... ..+...+.. ..+.. ...+|+| ...|..|+++.|.|...+.
T Consensus 192 ~N~L~tlP~~lg~l~~L~~LyL~----------~Nki~--------------~lPef~g--cs~L~Elh~g~N~i~~lpa 245 (565)
T KOG0472|consen 192 SNLLETLPPELGGLESLELLYLR----------RNKIR--------------FLPEFPG--CSLLKELHVGENQIEMLPA 245 (565)
T ss_pred hhhhhcCChhhcchhhhHHHHhh----------hcccc--------------cCCCCCc--cHHHHHHHhcccHHHhhHH
Confidence 222221111000 000000000 00000 0123333 5678889999999996555
Q ss_pred ccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEEEcccCcCcc
Q 039997 159 SEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSC 226 (333)
Q Consensus 159 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~ 226 (333)
+...+++++..|||..|+++ ..|+.+-.+.+|..||+|+|.|++.++.++++ .|+.|-+.|||+..
T Consensus 246 e~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrT 311 (565)
T KOG0472|consen 246 EHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRT 311 (565)
T ss_pred HHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHH
Confidence 66679999999999999999 55666778899999999999999988899999 99999999999863
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.56 E-value=1.1e-14 Score=141.47 Aligned_cols=204 Identities=20% Similarity=0.256 Sum_probs=131.0
Q ss_pred CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhh-hccccccccC
Q 039997 2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCI-TNLLFWKVGN 80 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l-~~L~~L~~~~ 80 (333)
++|++|++++|.++ .+|..+. .+|+.|+|++|+++. +|..+. .+|+.|++++|+++ .+|..+ .+|+.|++++
T Consensus 220 ~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~~-LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~~sL~~L~Ls~ 292 (754)
T PRK15370 220 GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRITE-LPERLP--SALQSLDLFHNKIS-CLPENLPEELRYLSVYD 292 (754)
T ss_pred cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccCc-CChhHh--CCCCEEECcCCccC-ccccccCCCCcEEECCC
Confidence 47899999999998 5676654 579999999999984 455553 58999999999998 566544 4788999999
Q ss_pred CccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCcc
Q 039997 81 GDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSE 160 (333)
Q Consensus 81 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 160 (333)
|.+..++..... .+.......+.... +... ....+....+..+.+..+++...++|+.|++++|+++. .|..
T Consensus 293 N~Lt~LP~~lp~-sL~~L~Ls~N~Lt~--LP~~----l~~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~L~~-LP~~ 364 (754)
T PRK15370 293 NSIRTLPAHLPS-GITHLNVQSNSLTA--LPET----LPPGLKTLEAGENALTSLPASLPPELQVLDVSKNQITV-LPET 364 (754)
T ss_pred CccccCcccchh-hHHHHHhcCCcccc--CCcc----ccccceeccccCCccccCChhhcCcccEEECCCCCCCc-CChh
Confidence 988876542221 11111111111110 0000 01122223334445555555556778888888888874 4443
Q ss_pred ccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCCC----CCCCCCCCEEEcccCcCc
Q 039997 161 IGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQ----LTELHSLSKFDVSYNNLS 225 (333)
Q Consensus 161 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~----~~~l~~L~~L~l~~N~l~ 225 (333)
+ .++|+.|+|++|+++.+++ .+. .+|+.|++++|+++.++.. ....+.+..+++.+|+++
T Consensus 365 l--p~~L~~LdLs~N~Lt~LP~-~l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 365 L--PPTITTLDVSRNALTNLPE-NLP--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred h--cCCcCEEECCCCcCCCCCH-hHH--HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 3 2578888888888885543 332 3578888888888765433 233467788888888886
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.51 E-value=2.6e-15 Score=142.55 Aligned_cols=216 Identities=26% Similarity=0.303 Sum_probs=158.6
Q ss_pred CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhc-----cccc
Q 039997 2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITN-----LLFW 76 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~-----L~~L 76 (333)
.+|+.++..+|.++ .+|..+....+|+.|+...|.++ -+|....+++.|++|||..|++. ..|+.+-. +..|
T Consensus 264 ~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~l 340 (1081)
T KOG0618|consen 264 ANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTL 340 (1081)
T ss_pred ccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHH
Confidence 57899999999997 78889999999999999999999 45556778999999999999998 55554322 2334
Q ss_pred cccCCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhh---hccccEEECCCCcc
Q 039997 77 KVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVI---LEYMAGLDLSSNEL 153 (333)
Q Consensus 77 ~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~L~~L~Ls~n~l 153 (333)
+.+.|++...+.... .........+-..+.+.-+.-....-..++.+..+..+++..|+... ++.|+.|+||||++
T Consensus 341 n~s~n~l~~lp~~~e-~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL 419 (1081)
T KOG0618|consen 341 NVSSNKLSTLPSYEE-NNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKL 419 (1081)
T ss_pred hhhhccccccccccc-hhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchh
Confidence 444444444331111 11111222222222222222223344566778888889888888766 67788999999999
Q ss_pred cccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEcccCcC
Q 039997 154 TGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNL 224 (333)
Q Consensus 154 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~~N~l 224 (333)
+ -+|+....++.|+.|...+|+|. ..| .+..++.|+.+|++.|.++...- .....++|++||++||..
T Consensus 420 ~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 420 T-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred h-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcc
Confidence 9 56688999999999999999999 556 78899999999999999987554 444558999999999984
No 20
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.43 E-value=5.3e-15 Score=133.78 Aligned_cols=170 Identities=31% Similarity=0.487 Sum_probs=142.6
Q ss_pred cEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhc--cccccccCCc
Q 039997 5 EILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITN--LLFWKVGNGD 82 (333)
Q Consensus 5 ~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~--L~~L~~~~n~ 82 (333)
...||+.|++. .+|..+..+..|+.+.|..|.|. .+|.+...|..|++|||+.|+++ .+|..+.. |+.|-+++|+
T Consensus 78 ~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lpLkvli~sNNk 154 (722)
T KOG0532|consen 78 VFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLPLKVLIVSNNK 154 (722)
T ss_pred hhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCcceeEEEecCc
Confidence 35799999999 89999999999999999999999 78888999999999999999998 77776554 5577778888
Q ss_pred cccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCcccc
Q 039997 83 LYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIG 162 (333)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 162 (333)
+..+++.... ...|..||.+.|.+. ..|..++
T Consensus 155 l~~lp~~ig~-----------------------------------------------~~tl~~ld~s~nei~-slpsql~ 186 (722)
T KOG0532|consen 155 LTSLPEEIGL-----------------------------------------------LPTLAHLDVSKNEIQ-SLPSQLG 186 (722)
T ss_pred cccCCccccc-----------------------------------------------chhHHHhhhhhhhhh-hchHHhh
Confidence 8765432221 467888999999998 6667788
Q ss_pred CccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEEEcccCcCccc
Q 039997 163 DLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCP 227 (333)
Q Consensus 163 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~ 227 (333)
++.+|+.|++..|++... |..+..|+ |..||+|.|+++.++-.|.++..|++|-|.+||+.-.
T Consensus 187 ~l~slr~l~vrRn~l~~l-p~El~~Lp-Li~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSP 249 (722)
T KOG0532|consen 187 YLTSLRDLNVRRNHLEDL-PEELCSLP-LIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSP 249 (722)
T ss_pred hHHHHHHHHHhhhhhhhC-CHHHhCCc-eeeeecccCceeecchhhhhhhhheeeeeccCCCCCC
Confidence 999999999999999955 45566777 9999999999997666999999999999999999844
No 21
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.43 E-value=1.7e-12 Score=133.81 Aligned_cols=80 Identities=23% Similarity=0.278 Sum_probs=55.4
Q ss_pred CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChh--hhcccccccc
Q 039997 2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSC--ITNLLFWKVG 79 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~--l~~L~~L~~~ 79 (333)
++|+.|+|+++.....+| .+..+++|++|+|++|..-...|..+..+++|+.|++++|..-..+|.. +.+|+.|.+.
T Consensus 634 ~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Ls 712 (1153)
T PLN03210 634 TGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLS 712 (1153)
T ss_pred CCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCC
Confidence 578888998875433555 4777888899998887655567788888888888888886433355543 3455555555
Q ss_pred CCc
Q 039997 80 NGD 82 (333)
Q Consensus 80 ~n~ 82 (333)
++.
T Consensus 713 gc~ 715 (1153)
T PLN03210 713 GCS 715 (1153)
T ss_pred CCC
Confidence 543
No 22
>PLN03150 hypothetical protein; Provisional
Probab=99.39 E-value=1.9e-12 Score=124.99 Aligned_cols=91 Identities=33% Similarity=0.581 Sum_probs=81.7
Q ss_pred hccccEEECCCCcccccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCC-CCCCEE
Q 039997 140 LEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTEL-HSLSKF 217 (333)
Q Consensus 140 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l-~~L~~L 217 (333)
+.+|+.|+|++|.+.+..|..+..+++|+.|+|++|++++.+|..++.+++|+.|+|++|.+++..| .+... .++..+
T Consensus 441 L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l 520 (623)
T PLN03150 441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASF 520 (623)
T ss_pred CCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceE
Confidence 4678999999999999999999999999999999999999999999999999999999999999888 66553 467899
Q ss_pred EcccCcCcccCCC
Q 039997 218 DVSYNNLSCPIPD 230 (333)
Q Consensus 218 ~l~~N~l~~~~~~ 230 (333)
++.+|+..|.+|.
T Consensus 521 ~~~~N~~lc~~p~ 533 (623)
T PLN03150 521 NFTDNAGLCGIPG 533 (623)
T ss_pred EecCCccccCCCC
Confidence 9999998876543
No 23
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.39 E-value=4.4e-13 Score=107.43 Aligned_cols=139 Identities=29% Similarity=0.362 Sum_probs=48.7
Q ss_pred ECCCCcCCCCCCccccCCcccceeeccccccccccchhhc-CCCCCCEEeCCCCcCCCCCChhhhccccccccCCccccc
Q 039997 8 DLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLC-QLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGNGDLYGL 86 (333)
Q Consensus 8 ~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~-~L~~L~~LdLs~N~l~~~~p~~l~~L~~L~~~~n~~~~~ 86 (333)
.|+.+.|. ..+ .+.+...+++|+|++|+|+.+. .+. .+.+|+.||+++|.|+. ++ ++..
T Consensus 3 ~lt~~~i~-~~~-~~~n~~~~~~L~L~~n~I~~Ie--~L~~~l~~L~~L~Ls~N~I~~-l~-~l~~-------------- 62 (175)
T PF14580_consen 3 RLTANMIE-QIA-QYNNPVKLRELNLRGNQISTIE--NLGATLDKLEVLDLSNNQITK-LE-GLPG-------------- 62 (175)
T ss_dssp -------------------------------------S--TT-TT--EEE-TTS--S---T-T-----------------
T ss_pred cccccccc-ccc-cccccccccccccccccccccc--chhhhhcCCCEEECCCCCCcc-cc-CccC--------------
Confidence 34555555 222 2344456888999999988553 244 57888999999998872 21 1111
Q ss_pred cccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCccccCccc
Q 039997 87 VERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRN 166 (333)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 166 (333)
++.|++|++++|+|+.+.+.....+++
T Consensus 63 -----------------------------------------------------L~~L~~L~L~~N~I~~i~~~l~~~lp~ 89 (175)
T PF14580_consen 63 -----------------------------------------------------LPRLKTLDLSNNRISSISEGLDKNLPN 89 (175)
T ss_dssp ------------------------------------------------------TT--EEE--SS---S-CHHHHHH-TT
T ss_pred -----------------------------------------------------hhhhhhcccCCCCCCccccchHHhCCc
Confidence 466888899999888543322246788
Q ss_pred cceeecccccCCCCch-HHHhCCCCCCEEeccCCcccCCCC----CCCCCCCCCEEEc
Q 039997 167 IHGLNLSHNFLSGSIP-ESFSNLKMIESLDLSHNKLNGQIP----QLTELHSLSKFDV 219 (333)
Q Consensus 167 L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~----~~~~l~~L~~L~l 219 (333)
|++|++++|+|..... ..++.+++|+.|++.+|.++.... .+..+|+|+.||-
T Consensus 90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 9999999998875422 457778889999999998875543 3567788888874
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.39 E-value=7.2e-14 Score=124.75 Aligned_cols=84 Identities=24% Similarity=0.204 Sum_probs=56.8
Q ss_pred CcccEEECCCCcCCC------CCCccccCCcccceeeccccccccccchhhcCCCC---CCEEeCCCCcCCC----CCCh
Q 039997 2 SALEILDLRDNYFSG------RIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRK---LSIMDLSHNRLNG----SIPS 68 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~------~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~---L~~LdLs~N~l~~----~~p~ 68 (333)
+++++++++++.+.+ .++..+..+++|+.|++++|.+....+..+..+.+ |++|++++|+++. .+..
T Consensus 51 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~ 130 (319)
T cd00116 51 PSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAK 130 (319)
T ss_pred CCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHH
Confidence 457888888887762 12345666778888888888887666666666655 8888888888762 1112
Q ss_pred hh----hccccccccCCcccc
Q 039997 69 CI----TNLLFWKVGNGDLYG 85 (333)
Q Consensus 69 ~l----~~L~~L~~~~n~~~~ 85 (333)
.+ .+++.|++.+|.+.+
T Consensus 131 ~l~~~~~~L~~L~L~~n~l~~ 151 (319)
T cd00116 131 GLKDLPPALEKLVLGRNRLEG 151 (319)
T ss_pred HHHhCCCCceEEEcCCCcCCc
Confidence 22 455777777777663
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.34 E-value=8.9e-14 Score=124.17 Aligned_cols=184 Identities=24% Similarity=0.252 Sum_probs=127.8
Q ss_pred CcccEEECCCCcCCCCCCccccCCcc---cceeecccccccc----ccchhhcCC-CCCCEEeCCCCcCCCCC----Chh
Q 039997 2 SALEILDLRDNYFSGRIPYGINEHSN---LRALLLKGNYLQG----PIPHQLCQL-RKLSIMDLSHNRLNGSI----PSC 69 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~---L~~L~L~~N~i~~----~~~~~f~~L-~~L~~LdLs~N~l~~~~----p~~ 69 (333)
++|+.|++++|.+.+..+..+..+.+ |++|++++|++++ .....+..+ ++|+.|++++|.+++.. +..
T Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~ 160 (319)
T cd00116 81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA 160 (319)
T ss_pred CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH
Confidence 58999999999998666666666666 9999999999873 233456677 99999999999998432 223
Q ss_pred hh---ccccccccCCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEE
Q 039997 70 IT---NLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGL 146 (333)
Q Consensus 70 l~---~L~~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 146 (333)
+. .++.|++.+|.+.+.. ... ... .+. ..++|+.|
T Consensus 161 ~~~~~~L~~L~l~~n~l~~~~--~~~-----l~~---------------------------------~l~--~~~~L~~L 198 (319)
T cd00116 161 LRANRDLKELNLANNGIGDAG--IRA-----LAE---------------------------------GLK--ANCNLEVL 198 (319)
T ss_pred HHhCCCcCEEECcCCCCchHH--HHH-----HHH---------------------------------HHH--hCCCCCEE
Confidence 33 5778888777765410 000 000 000 03578999
Q ss_pred ECCCCcccccC----CccccCccccceeecccccCCCCchHHHh-C----CCCCCEEeccCCcccC--CC---CCCCCCC
Q 039997 147 DLSSNELTGDI----SSEIGDLRNIHGLNLSHNFLSGSIPESFS-N----LKMIESLDLSHNKLNG--QI---PQLTELH 212 (333)
Q Consensus 147 ~Ls~n~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~----l~~L~~L~L~~N~l~~--~~---~~~~~l~ 212 (333)
++++|.+++.. ...+..+++|+.|++++|.++......+. . .+.|+.|++++|.++. .. ..+..++
T Consensus 199 ~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~ 278 (319)
T cd00116 199 DLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKE 278 (319)
T ss_pred eccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCC
Confidence 99999887433 34556778899999999998853333222 2 3789999999998862 11 1455568
Q ss_pred CCCEEEcccCcCccc
Q 039997 213 SLSKFDVSYNNLSCP 227 (333)
Q Consensus 213 ~L~~L~l~~N~l~~~ 227 (333)
+|+.+++++|.+...
T Consensus 279 ~L~~l~l~~N~l~~~ 293 (319)
T cd00116 279 SLLELDLRGNKFGEE 293 (319)
T ss_pred CccEEECCCCCCcHH
Confidence 899999999998733
No 26
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.34 E-value=2.2e-11 Score=125.70 Aligned_cols=80 Identities=21% Similarity=0.209 Sum_probs=54.0
Q ss_pred ccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEEEcccCcCcccCCCCccccccCccccC
Q 039997 164 LRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCPIPDKEQFSTFDESSYR 243 (333)
Q Consensus 164 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~l~~~~~~ 243 (333)
.++|+.|++++|......|..++.+++|+.|++++|..-...|....+++|+.|++++|......|.. ...+..+.+.
T Consensus 777 ~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~--~~nL~~L~Ls 854 (1153)
T PLN03210 777 SPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDI--STNISDLNLS 854 (1153)
T ss_pred cccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccccccc--ccccCEeECC
Confidence 46788899998876667888899999999999998754333442236888999999987543333322 2234444454
Q ss_pred CC
Q 039997 244 GN 245 (333)
Q Consensus 244 ~n 245 (333)
+|
T Consensus 855 ~n 856 (1153)
T PLN03210 855 RT 856 (1153)
T ss_pred CC
Confidence 44
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.32 E-value=5.4e-13 Score=106.90 Aligned_cols=86 Identities=28% Similarity=0.288 Sum_probs=41.7
Q ss_pred hccccEEECCCCcccccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC--CCCCCCCCCEE
Q 039997 140 LEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP--QLTELHSLSKF 217 (333)
Q Consensus 140 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~l~~L~~L 217 (333)
+.+|+.||+++|.|+.+. .+..+++|+.|++++|+|+.+.+.....+++|+.|++++|+|..... .+..+++|+.|
T Consensus 41 l~~L~~L~Ls~N~I~~l~--~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L 118 (175)
T PF14580_consen 41 LDKLEVLDLSNNQITKLE--GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVL 118 (175)
T ss_dssp -TT--EEE-TTS--S--T--T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EE
T ss_pred hcCCCEEECCCCCCcccc--CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCccee
Confidence 456888999999998543 47778899999999999986544433468899999999999987666 67788999999
Q ss_pred EcccCcCccc
Q 039997 218 DVSYNNLSCP 227 (333)
Q Consensus 218 ~l~~N~l~~~ 227 (333)
++.+||++..
T Consensus 119 ~L~~NPv~~~ 128 (175)
T PF14580_consen 119 SLEGNPVCEK 128 (175)
T ss_dssp E-TT-GGGGS
T ss_pred eccCCcccch
Confidence 9999998643
No 28
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.29 E-value=3.2e-13 Score=113.68 Aligned_cols=131 Identities=28% Similarity=0.309 Sum_probs=107.3
Q ss_pred CcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhccccccccCCccccccccCCCCcccccccccCC
Q 039997 25 HSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNS 104 (333)
Q Consensus 25 l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~ 104 (333)
-..|+++|||+|.|+ .+.+++.-+++++.|++|+|+|... ++|..
T Consensus 283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v-----~nLa~----------------------------- 327 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV-----QNLAE----------------------------- 327 (490)
T ss_pred Hhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee-----hhhhh-----------------------------
Confidence 367889999999998 5556778889999999999998721 11111
Q ss_pred CCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCccccCccccceeecccccCCCCchHH
Q 039997 105 TVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPES 184 (333)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 184 (333)
+.+|+.||||+|.++ ...++...+.+++.|.|++|.|... ..
T Consensus 328 -----------------------------------L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~L--SG 369 (490)
T KOG1259|consen 328 -----------------------------------LPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIETL--SG 369 (490)
T ss_pred -----------------------------------cccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhhh--hh
Confidence 577899999999998 4556667888999999999999854 34
Q ss_pred HhCCCCCCEEeccCCcccCCCC--CCCCCCCCCEEEcccCcCcccC
Q 039997 185 FSNLKMIESLDLSHNKLNGQIP--QLTELHSLSKFDVSYNNLSCPI 228 (333)
Q Consensus 185 ~~~l~~L~~L~L~~N~l~~~~~--~~~~l~~L~~L~l~~N~l~~~~ 228 (333)
+.++-+|..||+++|+|..+.. .++++|-|+.+.+.+||+.+..
T Consensus 370 L~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 370 LRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred hHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 7788889999999999988766 8999999999999999998765
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.27 E-value=5.4e-12 Score=116.16 Aligned_cols=175 Identities=34% Similarity=0.474 Sum_probs=125.0
Q ss_pred CcccEEECCCCcCCCCCCccccCCc-ccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCCh--hhhccccccc
Q 039997 2 SALEILDLRDNYFSGRIPYGINEHS-NLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPS--CITNLLFWKV 78 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~~~~~~~~~l~-~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~--~l~~L~~L~~ 78 (333)
+.++.|++.+|.++ .++.....+. +|+.|++++|++. ..|.....+++|+.|++++|+++...+. ....+..|.+
T Consensus 116 ~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~l 193 (394)
T COG4886 116 TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDL 193 (394)
T ss_pred cceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheec
Confidence 35778888888888 5565666664 8888888888888 4445578888888889988888833332 5566777777
Q ss_pred cCCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCC
Q 039997 79 GNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDIS 158 (333)
Q Consensus 79 ~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 158 (333)
++|.+..++.... ....|++|++++|.+. ..+
T Consensus 194 s~N~i~~l~~~~~-----------------------------------------------~~~~L~~l~~~~N~~~-~~~ 225 (394)
T COG4886 194 SGNKISDLPPEIE-----------------------------------------------LLSALEELDLSNNSII-ELL 225 (394)
T ss_pred cCCccccCchhhh-----------------------------------------------hhhhhhhhhhcCCcce-ecc
Confidence 7777766432210 1344777888888544 445
Q ss_pred ccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEEEcccCcCcccC
Q 039997 159 SEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCPI 228 (333)
Q Consensus 159 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~ 228 (333)
..+..+.++..+.+++|++.. .+..++.+++++.|++++|.++.+.. +..+..++.+++++|.+....
T Consensus 226 ~~~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~ 293 (394)
T COG4886 226 SSLSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNAL 293 (394)
T ss_pred hhhhhcccccccccCCceeee-ccchhccccccceecccccccccccc-ccccCccCEEeccCccccccc
Confidence 567777888888888888773 35667777888888888888886665 777788888888888776443
No 30
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.27 E-value=2.9e-12 Score=84.82 Aligned_cols=61 Identities=34% Similarity=0.449 Sum_probs=57.9
Q ss_pred CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcC
Q 039997 2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRL 62 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l 62 (333)
++|++|++++|.|+.+.+..|.++++|++|++++|+++.+.+++|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 5899999999999987778999999999999999999999999999999999999999985
No 31
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.18 E-value=1.2e-11 Score=81.82 Aligned_cols=61 Identities=41% Similarity=0.561 Sum_probs=52.7
Q ss_pred ccccEEECCCCcccccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcc
Q 039997 141 EYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKL 201 (333)
Q Consensus 141 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 201 (333)
++|+.|++++|+++.+.+..|.++++|++|++++|+++.+.+.+|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3578889999999888888889999999999999999888888888999999999988875
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.17 E-value=2.6e-12 Score=108.26 Aligned_cols=131 Identities=28% Similarity=0.368 Sum_probs=102.2
Q ss_pred cccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhccccccccCCc
Q 039997 3 ALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGNGD 82 (333)
Q Consensus 3 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~~L~~~~n~ 82 (333)
.|+++|||+|.|+ .+..+..-+|.++.|++|+|.|..+. .+..|.+|+.||||+|.++.. ..+-.
T Consensus 285 ~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls~~-~Gwh~----------- 349 (490)
T KOG1259|consen 285 ELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLAEC-VGWHL----------- 349 (490)
T ss_pred hhhhccccccchh-hhhhhhhhccceeEEeccccceeeeh--hhhhcccceEeecccchhHhh-hhhHh-----------
Confidence 5789999999999 67777777899999999999998444 388999999999999998722 11100
Q ss_pred cccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCcccc
Q 039997 83 LYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIG 162 (333)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 162 (333)
.+.+.++|.|++|.|.. -..+.
T Consensus 350 --------------------------------------------------------KLGNIKtL~La~N~iE~--LSGL~ 371 (490)
T KOG1259|consen 350 --------------------------------------------------------KLGNIKTLKLAQNKIET--LSGLR 371 (490)
T ss_pred --------------------------------------------------------hhcCEeeeehhhhhHhh--hhhhH
Confidence 04667788899988863 23466
Q ss_pred CccccceeecccccCCCCc-hHHHhCCCCCCEEeccCCcccCCCC
Q 039997 163 DLRNIHGLNLSHNFLSGSI-PESFSNLKMIESLDLSHNKLNGQIP 206 (333)
Q Consensus 163 ~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~ 206 (333)
.+-+|..||+++|+|.... -..++++|.|+++.|.+|.+.+...
T Consensus 372 KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 372 KLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred hhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence 7778899999999988542 2467888999999999999887655
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=1.3e-11 Score=108.84 Aligned_cols=205 Identities=22% Similarity=0.190 Sum_probs=119.8
Q ss_pred CcccEEECCCCcCCCCCC-ccccCCcccceeecccccccccc--chhhcCCCCCCEEeCCCCcCCCCC----Chhhhccc
Q 039997 2 SALEILDLRDNYFSGRIP-YGINEHSNLRALLLKGNYLQGPI--PHQLCQLRKLSIMDLSHNRLNGSI----PSCITNLL 74 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~~~~-~~~~~l~~L~~L~L~~N~i~~~~--~~~f~~L~~L~~LdLs~N~l~~~~----p~~l~~L~ 74 (333)
++|++..|.+..+..... .....+++++.||||.|-+.... -.....|++|+.|+++.|++.... -..+..++
T Consensus 121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK 200 (505)
T KOG3207|consen 121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLK 200 (505)
T ss_pred HhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhh
Confidence 357777888877762221 35667889999999999886433 345678899999999999876322 23456666
Q ss_pred cccccCCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCccc
Q 039997 75 FWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELT 154 (333)
Q Consensus 75 ~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~ 154 (333)
.|.+..+.+..-.- ......+.+...+.+.... .......+..++..|+.|||++|++-
T Consensus 201 ~L~l~~CGls~k~V-------~~~~~~fPsl~~L~L~~N~--------------~~~~~~~~~~i~~~L~~LdLs~N~li 259 (505)
T KOG3207|consen 201 QLVLNSCGLSWKDV-------QWILLTFPSLEVLYLEANE--------------IILIKATSTKILQTLQELDLSNNNLI 259 (505)
T ss_pred eEEeccCCCCHHHH-------HHHHHhCCcHHHhhhhccc--------------ccceecchhhhhhHHhhccccCCccc
Confidence 77666555432000 0000000000000000000 00011122223677888888888776
Q ss_pred ccC-CccccCccccceeecccccCCCCch-HH-----HhCCCCCCEEeccCCcccCCCC--CCCCCCCCCEEEcccCcCc
Q 039997 155 GDI-SSEIGDLRNIHGLNLSHNFLSGSIP-ES-----FSNLKMIESLDLSHNKLNGQIP--QLTELHSLSKFDVSYNNLS 225 (333)
Q Consensus 155 ~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~-~~-----~~~l~~L~~L~L~~N~l~~~~~--~~~~l~~L~~L~l~~N~l~ 225 (333)
... ......++.|..|+++.+.+.++.- +. -...++|++|+++.|.+..... .+..+++|+.+.+..|.++
T Consensus 260 ~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 260 DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred ccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 433 2456677888888888888775421 11 2345778888888888865544 5666677777777777776
Q ss_pred cc
Q 039997 226 CP 227 (333)
Q Consensus 226 ~~ 227 (333)
-.
T Consensus 340 ~e 341 (505)
T KOG3207|consen 340 KE 341 (505)
T ss_pred cc
Confidence 43
No 34
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=8.1e-11 Score=103.88 Aligned_cols=179 Identities=17% Similarity=0.158 Sum_probs=121.7
Q ss_pred cCCcccceeeccccccccccc-hhhcCCCCCCEEeCCCCcCCCCCC-----hhhhccccccccCCccccccccCCCCccc
Q 039997 23 NEHSNLRALLLKGNYLQGPIP-HQLCQLRKLSIMDLSHNRLNGSIP-----SCITNLLFWKVGNGDLYGLVERGRDFDLE 96 (333)
Q Consensus 23 ~~l~~L~~L~L~~N~i~~~~~-~~f~~L~~L~~LdLs~N~l~~~~p-----~~l~~L~~L~~~~n~~~~~~~~~~~~~~~ 96 (333)
+++.+|+...|.+..+..+.. +....+++++.|||+.|-+....| +.+++|++|+++.|.+........
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~----- 192 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNT----- 192 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccc-----
Confidence 457889999999999873222 466789999999999998874332 457889999999888765221111
Q ss_pred ccccccCCCCCcCCCCCCCCccccceEEEEeecccccc--chhh--hhccccEEECCCCcccccCCccccCccccceeec
Q 039997 97 DIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYES--YKGV--ILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNL 172 (333)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 172 (333)
.....++....++.+.+.+ .... ..++|+.|+|.+|..-.........+..|++|||
T Consensus 193 -------------------~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdL 253 (505)
T KOG3207|consen 193 -------------------TLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDL 253 (505)
T ss_pred -------------------hhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccc
Confidence 1112222233333332221 1111 1688999999999533244445566788999999
Q ss_pred ccccCCCCc-hHHHhCCCCCCEEeccCCcccCCCC-C------CCCCCCCCEEEcccCcCc
Q 039997 173 SHNFLSGSI-PESFSNLKMIESLDLSHNKLNGQIP-Q------LTELHSLSKFDVSYNNLS 225 (333)
Q Consensus 173 s~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~-~------~~~l~~L~~L~l~~N~l~ 225 (333)
++|++-... -...+.++.|+.|+++.+.++.+-. . ...+++|+.|++..|++.
T Consensus 254 s~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~ 314 (505)
T KOG3207|consen 254 SNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR 314 (505)
T ss_pred cCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence 999987443 2456778899999999999876533 2 366899999999999985
No 35
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.01 E-value=4.2e-10 Score=103.62 Aligned_cols=190 Identities=30% Similarity=0.365 Sum_probs=136.4
Q ss_pred EEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCC-CCCEEeCCCCcCCCCCC---hhhhccccccccCC
Q 039997 6 ILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLR-KLSIMDLSHNRLNGSIP---SCITNLLFWKVGNG 81 (333)
Q Consensus 6 ~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~-~L~~LdLs~N~l~~~~p---~~l~~L~~L~~~~n 81 (333)
.++++.|.+. .-......++.++.|++.+|.++.+.+. ...+. +|+.|++++|.+. .+| ..+.+|+.|.+.+|
T Consensus 97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~~i~~~-~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNNITDIPPL-IGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccc-cCchhhhcccceeEEecCCcccccCccc-cccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 4677777774 2334455567899999999999855553 34553 8999999999988 443 34566667777777
Q ss_pred ccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCccc
Q 039997 82 DLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEI 161 (333)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 161 (333)
++..++.... ....|+.|++++|+++. .|...
T Consensus 174 ~l~~l~~~~~-----------------------------------------------~~~~L~~L~ls~N~i~~-l~~~~ 205 (394)
T COG4886 174 DLSDLPKLLS-----------------------------------------------NLSNLNNLDLSGNKISD-LPPEI 205 (394)
T ss_pred hhhhhhhhhh-----------------------------------------------hhhhhhheeccCCcccc-Cchhh
Confidence 7765432111 15778999999999994 44444
Q ss_pred cCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEEEcccCcCcccCCCCccccccCccc
Q 039997 162 GDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCPIPDKEQFSTFDESS 241 (333)
Q Consensus 162 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~l~~~~ 241 (333)
....+|+.+.+++|.+. ..+..+..+.++..+.+.+|++......+..++.++.+++++|.++-... ......+..++
T Consensus 206 ~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~ 283 (394)
T COG4886 206 ELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELD 283 (394)
T ss_pred hhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeeccchhccccccceecccccccccccc-ccccCccCEEe
Confidence 45566999999999655 44567888899999999999988765577888889999999999885543 44556666667
Q ss_pred cCCCCCC
Q 039997 242 YRGNLNL 248 (333)
Q Consensus 242 ~~~n~~~ 248 (333)
..++...
T Consensus 284 ~s~n~~~ 290 (394)
T COG4886 284 LSGNSLS 290 (394)
T ss_pred ccCcccc
Confidence 7666544
No 36
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.95 E-value=6.8e-11 Score=107.56 Aligned_cols=149 Identities=30% Similarity=0.429 Sum_probs=100.9
Q ss_pred cccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhccc---ccccc
Q 039997 3 ALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLL---FWKVG 79 (333)
Q Consensus 3 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~---~L~~~ 79 (333)
.|+.+.|..|.|. .+|..+..+..|++|+|+.|+++ ..|..++.|+ |+.|-+++|+++ .+|..++.+. .|+.+
T Consensus 99 ~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s 174 (722)
T KOG0532|consen 99 SLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVS 174 (722)
T ss_pred HHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhh
Confidence 3566778888888 78888899999999999999998 6666666655 888999999988 6676665333 44445
Q ss_pred CCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCc
Q 039997 80 NGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISS 159 (333)
Q Consensus 80 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 159 (333)
.|.+..++..... +.+|+.|.+..|.+. ..|.
T Consensus 175 ~nei~slpsql~~-----------------------------------------------l~slr~l~vrRn~l~-~lp~ 206 (722)
T KOG0532|consen 175 KNEIQSLPSQLGY-----------------------------------------------LTSLRDLNVRRNHLE-DLPE 206 (722)
T ss_pred hhhhhhchHHhhh-----------------------------------------------HHHHHHHHHhhhhhh-hCCH
Confidence 5555443221111 455666777777776 3344
Q ss_pred cccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCC
Q 039997 160 EIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 205 (333)
Q Consensus 160 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 205 (333)
.+..|+ |..||+|.|+++ .+|..|.+|+.|++|-|.+|.+...+
T Consensus 207 El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqSPP 250 (722)
T KOG0532|consen 207 ELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQSPP 250 (722)
T ss_pred HHhCCc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCCCCh
Confidence 444544 677777777777 55667777777777777777776533
No 37
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.78 E-value=7.9e-10 Score=102.27 Aligned_cols=80 Identities=26% Similarity=0.270 Sum_probs=44.1
Q ss_pred ccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCC-hhhhccccccccCCc
Q 039997 4 LEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIP-SCITNLLFWKVGNGD 82 (333)
Q Consensus 4 L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p-~~l~~L~~L~~~~n~ 82 (333)
++.+++..|.|.. +-..+..+++|..|++.+|+|+.+.. .+..+.+|++||+++|.|+...+ ..+..|..|++.+|.
T Consensus 74 l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~ 151 (414)
T KOG0531|consen 74 LKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNL 151 (414)
T ss_pred HHhhccchhhhhh-hhcccccccceeeeeccccchhhccc-chhhhhcchheeccccccccccchhhccchhhheeccCc
Confidence 4445556666652 22335556666666666666664433 14556666666777666663332 234445555555555
Q ss_pred ccc
Q 039997 83 LYG 85 (333)
Q Consensus 83 ~~~ 85 (333)
+..
T Consensus 152 i~~ 154 (414)
T KOG0531|consen 152 ISD 154 (414)
T ss_pred chh
Confidence 554
No 38
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.74 E-value=1.3e-10 Score=108.60 Aligned_cols=86 Identities=33% Similarity=0.277 Sum_probs=59.9
Q ss_pred hccccEEECCCCcccccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC--CCCCCCCCCEE
Q 039997 140 LEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP--QLTELHSLSKF 217 (333)
Q Consensus 140 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~l~~L~~L 217 (333)
++.|++|||++|.++ .+|..-..-.+|+.|++++|.++.. ..+.++++|+.||+++|-|.+... .+..+..|+.|
T Consensus 208 l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L 284 (1096)
T KOG1859|consen 208 LPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVL 284 (1096)
T ss_pred cccccccccccchhc-cccccchhhhhheeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHH
Confidence 566788888888887 3443222223488888888888754 346778888888888888776544 45566778888
Q ss_pred EcccCcCcccC
Q 039997 218 DVSYNNLSCPI 228 (333)
Q Consensus 218 ~l~~N~l~~~~ 228 (333)
.|.|||+-|..
T Consensus 285 ~LeGNPl~c~p 295 (1096)
T KOG1859|consen 285 WLEGNPLCCAP 295 (1096)
T ss_pred hhcCCccccCH
Confidence 88888887653
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.69 E-value=2.3e-09 Score=99.14 Aligned_cols=82 Identities=24% Similarity=0.244 Sum_probs=62.6
Q ss_pred CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCC-hhhhccccccccC
Q 039997 2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIP-SCITNLLFWKVGN 80 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p-~~l~~L~~L~~~~ 80 (333)
++|+.|++.+|.|.. +...+..+++|++|++++|+|+.+.+ +..+..|+.|++++|.|+...- ..+..++.+++.+
T Consensus 95 ~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~l~~ 171 (414)
T KOG0531|consen 95 KSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISDISGLESLKSLKLLDLSY 171 (414)
T ss_pred cceeeeeccccchhh-cccchhhhhcchheeccccccccccc--hhhccchhhheeccCcchhccCCccchhhhcccCCc
Confidence 578899999999994 43347889999999999999997765 5677789999999999973211 2256666777777
Q ss_pred Cccccc
Q 039997 81 GDLYGL 86 (333)
Q Consensus 81 n~~~~~ 86 (333)
|.+..+
T Consensus 172 n~i~~i 177 (414)
T KOG0531|consen 172 NRIVDI 177 (414)
T ss_pred chhhhh
Confidence 766653
No 40
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.62 E-value=3.2e-09 Score=91.49 Aligned_cols=182 Identities=20% Similarity=0.218 Sum_probs=103.9
Q ss_pred CcccEEECCCCcCCCCCCccc----cCCcccceeeccccccccccchh-------------hcCCCCCCEEeCCCCcCCC
Q 039997 2 SALEILDLRDNYFSGRIPYGI----NEHSNLRALLLKGNYLQGPIPHQ-------------LCQLRKLSIMDLSHNRLNG 64 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~~~~~~~----~~l~~L~~L~L~~N~i~~~~~~~-------------f~~L~~L~~LdLs~N~l~~ 64 (333)
++|++||||+|.+.-..+..| ....+|++|.|.+|.+...-... ...-++|+.++.++|++..
T Consensus 92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen 171 (382)
T KOG1909|consen 92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN 171 (382)
T ss_pred CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc
Confidence 378888888888875544443 34578888888888876332222 2335778888888888763
Q ss_pred CCC----hhhh---ccccccccCCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchh
Q 039997 65 SIP----SCIT---NLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKG 137 (333)
Q Consensus 65 ~~p----~~l~---~L~~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (333)
..- ..|+ .+..+++..|.+..-.. ......-
T Consensus 172 ~ga~~~A~~~~~~~~leevr~~qN~I~~eG~------------------------------------------~al~eal 209 (382)
T KOG1909|consen 172 GGATALAEAFQSHPTLEEVRLSQNGIRPEGV------------------------------------------TALAEAL 209 (382)
T ss_pred ccHHHHHHHHHhccccceEEEecccccCchh------------------------------------------HHHHHHH
Confidence 211 1122 22233333333222000 0000000
Q ss_pred hhhccccEEECCCCccccc----CCccccCccccceeecccccCCCCchHH----H-hCCCCCCEEeccCCcccCC----
Q 039997 138 VILEYMAGLDLSSNELTGD----ISSEIGDLRNIHGLNLSHNFLSGSIPES----F-SNLKMIESLDLSHNKLNGQ---- 204 (333)
Q Consensus 138 ~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~----~-~~l~~L~~L~L~~N~l~~~---- 204 (333)
...++|+.|||..|.++.. ....++.+++|+.|+++++.++..-..+ + ...++|+.|.+.+|.|+..
T Consensus 210 ~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~ 289 (382)
T KOG1909|consen 210 EHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALA 289 (382)
T ss_pred HhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHH
Confidence 0056777788887777642 2345666777888888887776443222 2 2346777888888777531
Q ss_pred CC-CCCCCCCCCEEEcccCcCc
Q 039997 205 IP-QLTELHSLSKFDVSYNNLS 225 (333)
Q Consensus 205 ~~-~~~~l~~L~~L~l~~N~l~ 225 (333)
.. .....+.|..|++++|.+.
T Consensus 290 la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 290 LAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred HHHHHhcchhhHHhcCCccccc
Confidence 11 3444677778888888773
No 41
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.61 E-value=2.5e-09 Score=80.29 Aligned_cols=88 Identities=20% Similarity=0.240 Sum_probs=59.5
Q ss_pred ccccEEECCCCcccccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEEEcc
Q 039997 141 EYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVS 220 (333)
Q Consensus 141 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~ 220 (333)
+..++|++++|.|+ ..|..+..++.|+.|+++.|.+. ..|..+..+.++..||..+|.+..++-.+..-......+++
T Consensus 77 ~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~eid~dl~~s~~~al~~lg 154 (177)
T KOG4579|consen 77 PTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARAEIDVDLFYSSLPALIKLG 154 (177)
T ss_pred chhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccccCcHHHhccccHHHHHhc
Confidence 45677888888888 45555888888888888888888 45556666888888888888777544432222233344557
Q ss_pred cCcCcccCCC
Q 039997 221 YNNLSCPIPD 230 (333)
Q Consensus 221 ~N~l~~~~~~ 230 (333)
++++.+.|+.
T Consensus 155 nepl~~~~~~ 164 (177)
T KOG4579|consen 155 NEPLGDETKK 164 (177)
T ss_pred CCcccccCcc
Confidence 7777776654
No 42
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.57 E-value=1.4e-09 Score=101.88 Aligned_cols=107 Identities=29% Similarity=0.289 Sum_probs=83.9
Q ss_pred hccccEEECCCCcccccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEEEc
Q 039997 140 LEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDV 219 (333)
Q Consensus 140 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l 219 (333)
++.++.|||++|+++... .+..++.|++|||+.|+++.++--.-.+.. |+.|++++|.++.+. .+.++.+|+.||+
T Consensus 186 l~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL~-gie~LksL~~LDl 261 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTLR-GIENLKSLYGLDL 261 (1096)
T ss_pred HHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhhh-hHHhhhhhhccch
Confidence 678999999999998544 778899999999999999955443334444 999999999988533 4667889999999
Q ss_pred ccCcCcccCCCC--ccccccCccccCCCCCCCC
Q 039997 220 SYNNLSCPIPDK--EQFSTFDESSYRGNLNLCC 250 (333)
Q Consensus 220 ~~N~l~~~~~~~--~~~~~l~~~~~~~n~~~c~ 250 (333)
++|-+.+.-.-. +.+..+..+.+.|||.-|.
T Consensus 262 syNll~~hseL~pLwsLs~L~~L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 262 SYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA 294 (1096)
T ss_pred hHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence 999998664322 4555677788999998773
No 43
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.40 E-value=1.9e-07 Score=80.75 Aligned_cols=234 Identities=18% Similarity=0.198 Sum_probs=140.3
Q ss_pred CcccEEECCCCcCCCC----CCccccCCcccceeecccccc---ccccc-------hhhcCCCCCCEEeCCCCcCCCCCC
Q 039997 2 SALEILDLRDNYFSGR----IPYGINEHSNLRALLLKGNYL---QGPIP-------HQLCQLRKLSIMDLSHNRLNGSIP 67 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~~----~~~~~~~l~~L~~L~L~~N~i---~~~~~-------~~f~~L~~L~~LdLs~N~l~~~~p 67 (333)
..++.++||+|.+... +...+...++|+.-++++=-- ...+| .++.+.++|++||||.|-+....+
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~ 109 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGI 109 (382)
T ss_pred CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccch
Confidence 4678999999998722 233456677888888876322 22233 345567799999999999886666
Q ss_pred hhhh-------ccccccccCCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhh-
Q 039997 68 SCIT-------NLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVI- 139 (333)
Q Consensus 68 ~~l~-------~L~~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 139 (333)
+.|. +|..|++.|+.+... .......-.. .+...........+.+....++++...+...
T Consensus 110 ~~l~~ll~s~~~L~eL~L~N~Glg~~---ag~~l~~al~---------~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~ 177 (382)
T KOG1909|consen 110 RGLEELLSSCTDLEELYLNNCGLGPE---AGGRLGRALF---------ELAVNKKAASKPKLRVFICGRNRLENGGATAL 177 (382)
T ss_pred HHHHHHHHhccCHHHHhhhcCCCChh---HHHHHHHHHH---------HHHHHhccCCCcceEEEEeeccccccccHHHH
Confidence 5553 233444444443221 0000000000 0000111111222334444555555444332
Q ss_pred ------hccccEEECCCCccccc----CCccccCccccceeecccccCCCC----chHHHhCCCCCCEEeccCCcccCCC
Q 039997 140 ------LEYMAGLDLSSNELTGD----ISSEIGDLRNIHGLNLSHNFLSGS----IPESFSNLKMIESLDLSHNKLNGQI 205 (333)
Q Consensus 140 ------l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~ 205 (333)
.+.|+.+.++.|.|... ....|.++++|+.|||..|-++.. ....+..+++|+.|+++++.+..-.
T Consensus 178 A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~G 257 (382)
T KOG1909|consen 178 AEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEG 257 (382)
T ss_pred HHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccccccc
Confidence 46788899999988632 235677889999999999998843 3456667888999999999886532
Q ss_pred C------CCCCCCCCCEEEcccCcCcccCC-----CCccccccCccccCCCCC
Q 039997 206 P------QLTELHSLSKFDVSYNNLSCPIP-----DKEQFSTFDESSYRGNLN 247 (333)
Q Consensus 206 ~------~~~~l~~L~~L~l~~N~l~~~~~-----~~~~~~~l~~~~~~~n~~ 247 (333)
. .-...++|+.+.+.+|.++..-. .+..-+.+..+.+++|..
T Consensus 258 a~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 258 AIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 2 12346889999999998873210 011255666777888876
No 44
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.36 E-value=2.1e-07 Score=56.56 Aligned_cols=36 Identities=33% Similarity=0.509 Sum_probs=17.0
Q ss_pred ccceeeccccccccccchhhcCCCCCCEEeCCCCcCC
Q 039997 27 NLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLN 63 (333)
Q Consensus 27 ~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~ 63 (333)
+|++|++++|+|+.+ |+.+..|++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~~l-~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITDL-PPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SSH-GGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCccc-CchHhCCCCCCEEEecCCCCC
Confidence 445555555555532 223455555555555555554
No 45
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.32 E-value=1.3e-07 Score=80.17 Aligned_cols=61 Identities=16% Similarity=0.209 Sum_probs=25.6
Q ss_pred ccccEEECCCCcccccCC-ccccCccccceeecccccCCCCc-hHHHhCCCCCCEEeccCCcc
Q 039997 141 EYMAGLDLSSNELTGDIS-SEIGDLRNIHGLNLSHNFLSGSI-PESFSNLKMIESLDLSHNKL 201 (333)
Q Consensus 141 ~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N~l 201 (333)
+++..+.+..|.+..... ..+..+|.+--|+|+.|+|.+.. -+++.++++|.-|.+++|.+
T Consensus 199 pnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl 261 (418)
T KOG2982|consen 199 PNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPL 261 (418)
T ss_pred ccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcc
Confidence 344444444444332222 23333444444555555544321 13344444455555555444
No 46
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.29 E-value=4e-08 Score=73.87 Aligned_cols=86 Identities=23% Similarity=0.253 Sum_probs=70.5
Q ss_pred ccccEEECCCCcccccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEEEcc
Q 039997 141 EYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVS 220 (333)
Q Consensus 141 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~ 220 (333)
..|+..+|++|.+...++..-...+.++.++|++|.|+ ..|..++.++.|+.|+++.|.+...+..+..+.++..|+..
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSP 131 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCC
Confidence 45777899999999665555556678999999999999 56677999999999999999998666666668889999998
Q ss_pred cCcCccc
Q 039997 221 YNNLSCP 227 (333)
Q Consensus 221 ~N~l~~~ 227 (333)
+|.....
T Consensus 132 ~na~~ei 138 (177)
T KOG4579|consen 132 ENARAEI 138 (177)
T ss_pred CCccccC
Confidence 8887643
No 47
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.19 E-value=2.2e-06 Score=68.89 Aligned_cols=84 Identities=23% Similarity=0.157 Sum_probs=55.2
Q ss_pred hccccEEECCCCcccccCCccccCccccceeecccccCCCCc-hHHHhCCCCCCEEeccCCcccCCCC----CCCCCCCC
Q 039997 140 LEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSI-PESFSNLKMIESLDLSHNKLNGQIP----QLTELHSL 214 (333)
Q Consensus 140 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~l~~L 214 (333)
++.|.+|.+.+|+|+.+.|..-.-+++|+.|.|.+|+|.... -.-+..+++|++|.+-+|.++...- .+..+++|
T Consensus 63 l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l 142 (233)
T KOG1644|consen 63 LPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSL 142 (233)
T ss_pred ccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcc
Confidence 456777777777777766665556677777777777766321 1234556777777777777764332 45667788
Q ss_pred CEEEcccCc
Q 039997 215 SKFDVSYNN 223 (333)
Q Consensus 215 ~~L~l~~N~ 223 (333)
+.||.++=.
T Consensus 143 ~~LDF~kVt 151 (233)
T KOG1644|consen 143 RTLDFQKVT 151 (233)
T ss_pred eEeehhhhh
Confidence 888776543
No 48
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.18 E-value=1.4e-06 Score=52.90 Aligned_cols=36 Identities=39% Similarity=0.677 Sum_probs=16.2
Q ss_pred ccceeecccccCCCCchHHHhCCCCCCEEeccCCccc
Q 039997 166 NIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLN 202 (333)
Q Consensus 166 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 202 (333)
+|+.|++++|+|+. +|..++.+++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence 34455555555552 2333445555555555555444
No 49
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.18 E-value=1.5e-06 Score=86.72 Aligned_cols=127 Identities=28% Similarity=0.348 Sum_probs=84.6
Q ss_pred ccEEECCCCcCCCCCCccccCCcccceeeccccc--cccccchhhcCCCCCCEEeCCCCcCCCCCChhhhccccccccCC
Q 039997 4 LEILDLRDNYFSGRIPYGINEHSNLRALLLKGNY--LQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGNG 81 (333)
Q Consensus 4 L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~--i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~~L~~~~n 81 (333)
.+...+-+|.+. .++.... .+.|++|-+..|. +..+.++.|..++.|+.|||++|.=-+.+|+.++.|
T Consensus 525 ~rr~s~~~~~~~-~~~~~~~-~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~L-------- 594 (889)
T KOG4658|consen 525 VRRMSLMNNKIE-HIAGSSE-NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGEL-------- 594 (889)
T ss_pred eeEEEEeccchh-hccCCCC-CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhh--------
Confidence 344555555554 3333322 3468888888886 565667778888888888888877656777777664
Q ss_pred ccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCccc
Q 039997 82 DLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEI 161 (333)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 161 (333)
-+|++|++++..+. ..|..+
T Consensus 595 -----------------------------------------------------------i~LryL~L~~t~I~-~LP~~l 614 (889)
T KOG4658|consen 595 -----------------------------------------------------------VHLRYLDLSDTGIS-HLPSGL 614 (889)
T ss_pred -----------------------------------------------------------hhhhcccccCCCcc-ccchHH
Confidence 44566777777777 566677
Q ss_pred cCccccceeecccccCCCCchHHHhCCCCCCEEeccCCc
Q 039997 162 GDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNK 200 (333)
Q Consensus 162 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 200 (333)
+++..|.+||+..+.-...+|.....|.+|++|.+..-.
T Consensus 615 ~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 615 GNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred HHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 777777777777766544556666667777777765543
No 50
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.10 E-value=2.2e-06 Score=85.60 Aligned_cols=176 Identities=22% Similarity=0.238 Sum_probs=110.4
Q ss_pred CcccEEECCCCc--CCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhcccccccc
Q 039997 2 SALEILDLRDNY--FSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVG 79 (333)
Q Consensus 2 ~~L~~L~Ls~N~--i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~~L~~~ 79 (333)
++|++|-+..|. +.......|..++.|++|||++|.--+..|..+++|-+|++|++++..+. .+|.++.+|+.|...
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYL 623 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhee
Confidence 467888888886 55455556888999999999998776689999999999999999999998 899999888766665
Q ss_pred CCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhh--hhccccEEECCCCc--ccc
Q 039997 80 NGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGV--ILEYMAGLDLSSNE--LTG 155 (333)
Q Consensus 80 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~L~~L~Ls~n~--l~~ 155 (333)
+...++..... ++. .+.+|++|.+-.-. .+.
T Consensus 624 nl~~~~~l~~~---------------------------------------------~~i~~~L~~Lr~L~l~~s~~~~~~ 658 (889)
T KOG4658|consen 624 NLEVTGRLESI---------------------------------------------PGILLELQSLRVLRLPRSALSNDK 658 (889)
T ss_pred ccccccccccc---------------------------------------------cchhhhcccccEEEeeccccccch
Confidence 55444311111 000 05678888775443 222
Q ss_pred cCCccccCccccceeecccccCCCCchHHHhCCCCCC----EEeccCCcccCCCCCCCCCCCCCEEEcccCcCc
Q 039997 156 DISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIE----SLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLS 225 (333)
Q Consensus 156 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~----~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~ 225 (333)
..-..+..+.+|+.+....... ..-..+..++.|. .+.+..+........+..+.+|+.|.+.+....
T Consensus 659 ~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~ 730 (889)
T KOG4658|consen 659 LLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGIS 730 (889)
T ss_pred hhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCc
Confidence 2223334555555555533332 0111223333333 333333333333446677788888888776654
No 51
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=1.1e-07 Score=80.53 Aligned_cols=180 Identities=21% Similarity=0.176 Sum_probs=105.9
Q ss_pred CcccEEECCCCcCCCC-CCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCc-CCCCCC-hhhhccccccc
Q 039997 2 SALEILDLRDNYFSGR-IPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNR-LNGSIP-SCITNLLFWKV 78 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~-l~~~~p-~~l~~L~~L~~ 78 (333)
+.||+||||+..|+.. ...-+..+.+|+.|.|.++++.+-+...+..-.+|+.||++.+. ++...- --+.+++.|+-
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 3578889998888721 23345667888999999999887777778888899999988754 331111 11233333333
Q ss_pred cCCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCccc---c
Q 039997 79 GNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELT---G 155 (333)
Q Consensus 79 ~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~---~ 155 (333)
.+....++... .....-..+-++|+.|+|+|+.-. .
T Consensus 265 LNlsWc~l~~~-----------------------------------------~Vtv~V~hise~l~~LNlsG~rrnl~~s 303 (419)
T KOG2120|consen 265 LNLSWCFLFTE-----------------------------------------KVTVAVAHISETLTQLNLSGYRRNLQKS 303 (419)
T ss_pred cCchHhhccch-----------------------------------------hhhHHHhhhchhhhhhhhhhhHhhhhhh
Confidence 22222221000 000000111466777888876422 1
Q ss_pred cCCccccCccccceeeccccc-CCCCchHHHhCCCCCCEEeccCCcccCCCC--CCCCCCCCCEEEcccC
Q 039997 156 DISSEIGDLRNIHGLNLSHNF-LSGSIPESFSNLKMIESLDLSHNKLNGQIP--QLTELHSLSKFDVSYN 222 (333)
Q Consensus 156 ~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~l~~L~~L~l~~N 222 (333)
.........|+|.+||||+|. ++......|.+++-|++|.++.+-.-.... .+...|.|.+||+.+.
T Consensus 304 h~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 304 HLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred HHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 111223457888888888875 443344567777888888888775332111 4566788888887653
No 52
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.02 E-value=6.2e-06 Score=66.34 Aligned_cols=84 Identities=21% Similarity=0.276 Sum_probs=72.3
Q ss_pred hccccEEECCCCcccccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC--CCCCCCCCCEE
Q 039997 140 LEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP--QLTELHSLSKF 217 (333)
Q Consensus 140 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~l~~L~~L 217 (333)
......+||++|.+.. ...|.+++.|.+|.|++|+|+.+.|..-..+++|..|.|.+|+|..+.. .+..+++|+.|
T Consensus 41 ~d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred ccccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 4567789999999863 3467889999999999999998888776778899999999999987665 68888999999
Q ss_pred EcccCcCc
Q 039997 218 DVSYNNLS 225 (333)
Q Consensus 218 ~l~~N~l~ 225 (333)
.+-+|+.+
T Consensus 119 tll~Npv~ 126 (233)
T KOG1644|consen 119 TLLGNPVE 126 (233)
T ss_pred eecCCchh
Confidence 99999986
No 53
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.79 E-value=7.1e-05 Score=67.78 Aligned_cols=60 Identities=17% Similarity=0.368 Sum_probs=37.1
Q ss_pred cccEEECCCCcCCCCCCccccCCcccceeecccc-ccccccchhhcCCCCCCEEeCCCC-cCCCCCChhh
Q 039997 3 ALEILDLRDNYFSGRIPYGINEHSNLRALLLKGN-YLQGPIPHQLCQLRKLSIMDLSHN-RLNGSIPSCI 70 (333)
Q Consensus 3 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~f~~L~~L~~LdLs~N-~l~~~~p~~l 70 (333)
+++.|++++|.|+ .+|. +- .+|++|.++++ .++ ..|+.+. .+|+.|++++| .+. .+|..+
T Consensus 53 ~l~~L~Is~c~L~-sLP~-LP--~sLtsL~Lsnc~nLt-sLP~~LP--~nLe~L~Ls~Cs~L~-sLP~sL 114 (426)
T PRK15386 53 ASGRLYIKDCDIE-SLPV-LP--NELTEITIENCNNLT-TLPGSIP--EGLEKLTVCHCPEIS-GLPESV 114 (426)
T ss_pred CCCEEEeCCCCCc-ccCC-CC--CCCcEEEccCCCCcc-cCCchhh--hhhhheEccCccccc-cccccc
Confidence 5677888888777 4552 21 35888888763 343 5555442 57888888877 444 455543
No 54
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.59 E-value=0.00011 Score=56.09 Aligned_cols=44 Identities=14% Similarity=0.172 Sum_probs=25.8
Q ss_pred CCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCC
Q 039997 18 IPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLN 63 (333)
Q Consensus 18 ~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~ 63 (333)
....|.+.++|+.+.+.. .++.+...+|.+.++|+.+.+..+ +.
T Consensus 4 ~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~ 47 (129)
T PF13306_consen 4 GNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT 47 (129)
T ss_dssp -TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS
T ss_pred CHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc
Confidence 345677777888888874 566677778888888888888765 44
No 55
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.57 E-value=7.9e-05 Score=72.78 Aligned_cols=86 Identities=23% Similarity=0.255 Sum_probs=63.1
Q ss_pred hccccEEECCCCcccccCCccccCccccceeecccccCCC-CchHHHhCCCCCCEEeccCCcccCCC-------CCCCCC
Q 039997 140 LEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSG-SIPESFSNLKMIESLDLSHNKLNGQI-------PQLTEL 211 (333)
Q Consensus 140 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~-------~~~~~l 211 (333)
+++|..||+|+.+++.+ .+.+.+++|+.|.+.+=.+.. ..-..+..|++|++||+|..+..... ..-..+
T Consensus 172 FpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~L 249 (699)
T KOG3665|consen 172 FPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVL 249 (699)
T ss_pred cCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccC
Confidence 67899999999998855 677889999999988866663 22235667899999999987654322 112347
Q ss_pred CCCCEEEcccCcCccc
Q 039997 212 HSLSKFDVSYNNLSCP 227 (333)
Q Consensus 212 ~~L~~L~l~~N~l~~~ 227 (333)
|.|+.||.++..+...
T Consensus 250 peLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 250 PELRFLDCSGTDINEE 265 (699)
T ss_pred ccccEEecCCcchhHH
Confidence 8999999998776643
No 56
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.50 E-value=3.4e-05 Score=64.99 Aligned_cols=70 Identities=21% Similarity=0.287 Sum_probs=46.4
Q ss_pred CcccEEECCCCcCCCC----CCccccCCcccceeeccccccc---cc-------cchhhcCCCCCCEEeCCCCcCCCCCC
Q 039997 2 SALEILDLRDNYFSGR----IPYGINEHSNLRALLLKGNYLQ---GP-------IPHQLCQLRKLSIMDLSHNRLNGSIP 67 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~~----~~~~~~~l~~L~~L~L~~N~i~---~~-------~~~~f~~L~~L~~LdLs~N~l~~~~p 67 (333)
..++.+|||+|-|... +...++.-.+|+..+++.-... .. .-.++-++++|+..+||.|-+....|
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~ 109 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP 109 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence 4678899999988732 2233555677777777764322 11 22345678899999999998887666
Q ss_pred hhhh
Q 039997 68 SCIT 71 (333)
Q Consensus 68 ~~l~ 71 (333)
..+.
T Consensus 110 e~L~ 113 (388)
T COG5238 110 EELG 113 (388)
T ss_pred hHHH
Confidence 5543
No 57
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.48 E-value=0.00022 Score=54.46 Aligned_cols=118 Identities=16% Similarity=0.233 Sum_probs=65.4
Q ss_pred CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhccccccccCC
Q 039997 2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGNG 81 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~~L~~~~n 81 (333)
++|+.+.+.. .+..+....|.++++|+.+.+.++ +..+...+|.+..+++.+.+.+ .+.......|..
T Consensus 12 ~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~--------- 79 (129)
T PF13306_consen 12 SNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSN--------- 79 (129)
T ss_dssp TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT---------
T ss_pred CCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccc---------
Confidence 4788899885 577677888999999999999886 7778888999998999999975 433122222322
Q ss_pred ccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCccc
Q 039997 82 DLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEI 161 (333)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 161 (333)
..+++.+++..+ +..+....|
T Consensus 80 ----------------------------------------------------------~~~l~~i~~~~~-~~~i~~~~f 100 (129)
T PF13306_consen 80 ----------------------------------------------------------CTNLKNIDIPSN-ITEIGSSSF 100 (129)
T ss_dssp -----------------------------------------------------------TTECEEEETTT--BEEHTTTT
T ss_pred ----------------------------------------------------------cccccccccCcc-ccEEchhhh
Confidence 355677777665 665777788
Q ss_pred cCccccceeecccccCCCCchHHHhCCCCCC
Q 039997 162 GDLRNIHGLNLSHNFLSGSIPESFSNLKMIE 192 (333)
Q Consensus 162 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 192 (333)
.+. +|+.+.+.. .++.+....|.+.++|+
T Consensus 101 ~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 101 SNC-NLKEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp TT--T--EEE-TT-B-SS----GGG------
T ss_pred cCC-CceEEEECC-CccEECCccccccccCC
Confidence 886 888888876 44446677777776663
No 58
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.35 E-value=0.00032 Score=60.02 Aligned_cols=183 Identities=18% Similarity=0.143 Sum_probs=119.0
Q ss_pred CcccEEECCCCcCCC--CCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCC----CCChhhhcccc
Q 039997 2 SALEILDLRDNYFSG--RIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNG----SIPSCITNLLF 75 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~--~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~----~~p~~l~~L~~ 75 (333)
++++++||.+|.|++ .+...+.+||.|++|+|+.|++...+...-..+.+|+.|-|.+..+.= ..-+.++.++.
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte 150 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE 150 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence 467889999999983 244557789999999999999974433222578899999999988751 12234455667
Q ss_pred ccccCCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccc
Q 039997 76 WKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTG 155 (333)
Q Consensus 76 L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 155 (333)
|.+++|++......-. - ... +-+.+.+|....|...-
T Consensus 151 lHmS~N~~rq~n~Dd~----------------------c------------~e~---------~s~~v~tlh~~~c~~~~ 187 (418)
T KOG2982|consen 151 LHMSDNSLRQLNLDDN----------------------C------------IED---------WSTEVLTLHQLPCLEQL 187 (418)
T ss_pred hhhccchhhhhccccc----------------------c------------ccc---------cchhhhhhhcCCcHHHH
Confidence 7887776543110000 0 000 01223344444433210
Q ss_pred --cCCccccCccccceeecccccCCCCch-HHHhCCCCCCEEeccCCcccCCCC--CCCCCCCCCEEEcccCcCccc
Q 039997 156 --DISSEIGDLRNIHGLNLSHNFLSGSIP-ESFSNLKMIESLDLSHNKLNGQIP--QLTELHSLSKFDVSYNNLSCP 227 (333)
Q Consensus 156 --~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~--~~~~l~~L~~L~l~~N~l~~~ 227 (333)
..-..-.-+|++..+.+..|.+..... ..+...+.+..|+|+.|+|..... .+..+++|..+.+.+||+...
T Consensus 188 w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~ 264 (418)
T KOG2982|consen 188 WLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDP 264 (418)
T ss_pred HHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccccc
Confidence 000111235678889999998875432 356667888899999999987655 789999999999999998643
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.30 E-value=0.00098 Score=60.56 Aligned_cols=54 Identities=22% Similarity=0.305 Sum_probs=33.6
Q ss_pred cCCcccceeeccccccccccchhhcCCCCCCEEeCCC-CcCCCCCChhh-hccccccccCC
Q 039997 23 NEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSH-NRLNGSIPSCI-TNLLFWKVGNG 81 (333)
Q Consensus 23 ~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~-N~l~~~~p~~l-~~L~~L~~~~n 81 (333)
..+.+++.|++++|.++.+ |. + -.+|+.|.+++ +.++ .+|..+ .+|+.|.+.++
T Consensus 49 ~~~~~l~~L~Is~c~L~sL-P~-L--P~sLtsL~Lsnc~nLt-sLP~~LP~nLe~L~Ls~C 104 (426)
T PRK15386 49 EEARASGRLYIKDCDIESL-PV-L--PNELTEITIENCNNLT-TLPGSIPEGLEKLTVCHC 104 (426)
T ss_pred HHhcCCCEEEeCCCCCccc-CC-C--CCCCcEEEccCCCCcc-cCCchhhhhhhheEccCc
Confidence 3467888899998888744 41 1 24688888887 3443 445433 35566666544
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.29 E-value=0.0001 Score=72.02 Aligned_cols=84 Identities=21% Similarity=0.315 Sum_probs=67.0
Q ss_pred hccccEEECCCCccccc-CCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC--CCCCCCCCCE
Q 039997 140 LEYMAGLDLSSNELTGD-ISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP--QLTELHSLSK 216 (333)
Q Consensus 140 l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~l~~L~~ 216 (333)
+|+|+.|.+++-.+... ......++|+|..||+|+..++.. ..++.+++|+.|.+.+=.+..-.. .+.++.+|+.
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v 224 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV 224 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence 78999999998766532 234556899999999999999965 668899999999988866664333 7788999999
Q ss_pred EEcccCcCc
Q 039997 217 FDVSYNNLS 225 (333)
Q Consensus 217 L~l~~N~l~ 225 (333)
||+|.....
T Consensus 225 LDIS~~~~~ 233 (699)
T KOG3665|consen 225 LDISRDKNN 233 (699)
T ss_pred eeccccccc
Confidence 999987654
No 61
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.25 E-value=0.00014 Score=60.95 Aligned_cols=79 Identities=27% Similarity=0.299 Sum_probs=48.3
Q ss_pred hccccEEECCCC--cccccCCccccCccccceeecccccCCCC-chHHHhCCCCCCEEeccCCcccCCCC----CCCCCC
Q 039997 140 LEYMAGLDLSSN--ELTGDISSEIGDLRNIHGLNLSHNFLSGS-IPESFSNLKMIESLDLSHNKLNGQIP----QLTELH 212 (333)
Q Consensus 140 l~~L~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~l~ 212 (333)
+++|+.|++|.| .+.+-.+.....+|+|+++++++|+|+.+ .-..+..+.+|.+||+.+|..+.... .+.-++
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~ 143 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLP 143 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhh
Confidence 567778888888 55544444445568888888888887731 11224455667778888777665433 234445
Q ss_pred CCCEEE
Q 039997 213 SLSKFD 218 (333)
Q Consensus 213 ~L~~L~ 218 (333)
+|.++|
T Consensus 144 ~L~~LD 149 (260)
T KOG2739|consen 144 SLKYLD 149 (260)
T ss_pred hhcccc
Confidence 555554
No 62
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.05 E-value=0.00027 Score=59.70 Aligned_cols=87 Identities=20% Similarity=0.218 Sum_probs=50.0
Q ss_pred hccccEEECCCCccccc----CCccccCccccceeecccccCCCCchHH----Hh--CCCCCCEEeccCCcccCCC----
Q 039997 140 LEYMAGLDLSSNELTGD----ISSEIGDLRNIHGLNLSHNFLSGSIPES----FS--NLKMIESLDLSHNKLNGQI---- 205 (333)
Q Consensus 140 l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~----~~--~l~~L~~L~L~~N~l~~~~---- 205 (333)
..+|+.|||..|-++-. ...+++.++.|+.|.+..|-++..-..+ |. ..++|..|...+|.+.+-.
T Consensus 213 ~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~ 292 (388)
T COG5238 213 SHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDI 292 (388)
T ss_pred hCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeee
Confidence 46777788887777632 2344556667778888777776432221 21 2356677777777654311
Q ss_pred --C--CCCCCCCCCEEEcccCcCcc
Q 039997 206 --P--QLTELHSLSKFDVSYNNLSC 226 (333)
Q Consensus 206 --~--~~~~l~~L~~L~l~~N~l~~ 226 (333)
+ .=..+|-|..+.+.+|++..
T Consensus 293 ~l~~~e~~~~p~L~~le~ngNr~~E 317 (388)
T COG5238 293 SLNEFEQDAVPLLVDLERNGNRIKE 317 (388)
T ss_pred chhhhhhcccHHHHHHHHccCcchh
Confidence 1 11234556666666777653
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.86 E-value=0.0006 Score=57.29 Aligned_cols=85 Identities=24% Similarity=0.274 Sum_probs=63.9
Q ss_pred hccccEEECCCCcccccCCccccCccccceeecccc--cCCCCchHHHhCCCCCCEEeccCCcccCCCC--CCCCCCCCC
Q 039997 140 LEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHN--FLSGSIPESFSNLKMIESLDLSHNKLNGQIP--QLTELHSLS 215 (333)
Q Consensus 140 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~l~~L~ 215 (333)
...|+.|.+.+..++. -..|-.+++|+.|.+|.| ++++-.+......++|++++++.|++..+.. .+..+.+|.
T Consensus 42 ~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 42 FVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK 119 (260)
T ss_pred ccchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence 4556777777766652 234567889999999999 6665555556677999999999999986443 567778899
Q ss_pred EEEcccCcCcc
Q 039997 216 KFDVSYNNLSC 226 (333)
Q Consensus 216 ~L~l~~N~l~~ 226 (333)
.|++.++.-+.
T Consensus 120 ~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 120 SLDLFNCSVTN 130 (260)
T ss_pred hhhcccCCccc
Confidence 99999887553
No 64
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.53 E-value=0.00075 Score=34.13 Aligned_cols=19 Identities=42% Similarity=0.653 Sum_probs=9.2
Q ss_pred ccEEECCCCcCCCCCCcccc
Q 039997 4 LEILDLRDNYFSGRIPYGIN 23 (333)
Q Consensus 4 L~~L~Ls~N~i~~~~~~~~~ 23 (333)
|++|||++|.|+ .+|..|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 455555555555 3444343
No 65
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.44 E-value=0.00018 Score=61.52 Aligned_cols=153 Identities=23% Similarity=0.174 Sum_probs=99.4
Q ss_pred CcccEEECCCCcCCCCCCccccCCcccceeeccccc-cccc-cchhhcCCCCCCEEeCCCCcCCCCCCh-----hhhccc
Q 039997 2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNY-LQGP-IPHQLCQLRKLSIMDLSHNRLNGSIPS-----CITNLL 74 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~-i~~~-~~~~f~~L~~L~~LdLs~N~l~~~~p~-----~l~~L~ 74 (333)
.+|+.|.|.++++.+.+...+++-.+|+.|+|+.+. ++.- ..-.|..++.|..|+++.+.+....-. .-.+++
T Consensus 210 ~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~ 289 (419)
T KOG2120|consen 210 SKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLT 289 (419)
T ss_pred HhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhh
Confidence 468899999999998888899999999999999753 4421 122477899999999999987532111 112344
Q ss_pred cccccCCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCc-c
Q 039997 75 FWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNE-L 153 (333)
Q Consensus 75 ~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~-l 153 (333)
.|++++..-. .+ .++..++ .-..++|.+||||.|. +
T Consensus 290 ~LNlsG~rrn--------l~-----------------~sh~~tL------------------~~rcp~l~~LDLSD~v~l 326 (419)
T KOG2120|consen 290 QLNLSGYRRN--------LQ-----------------KSHLSTL------------------VRRCPNLVHLDLSDSVML 326 (419)
T ss_pred hhhhhhhHhh--------hh-----------------hhHHHHH------------------HHhCCceeeecccccccc
Confidence 4444321100 00 0000000 0015789999999774 4
Q ss_pred cccCCccccCccccceeecccccCCCCchHH---HhCCCCCCEEeccCC
Q 039997 154 TGDISSEIGDLRNIHGLNLSHNFLSGSIPES---FSNLKMIESLDLSHN 199 (333)
Q Consensus 154 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~---~~~l~~L~~L~L~~N 199 (333)
+.-.-..|..++.|++|.++.+.. ++|.. +...|+|.+||+.+.
T Consensus 327 ~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 327 KNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred CchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 433334566889999999999874 45554 556788999997654
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.37 E-value=0.00015 Score=61.41 Aligned_cols=82 Identities=22% Similarity=0.139 Sum_probs=45.9
Q ss_pred hccccEEECCCCcccccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC--CCCCCCCCCEE
Q 039997 140 LEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP--QLTELHSLSKF 217 (333)
Q Consensus 140 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~l~~L~~L 217 (333)
+.+.+.|+..|+.++++ .....++.|+.|.||-|+|+... .+..+++|+.|+|+.|.|..+.. .+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 34445566666655532 12335566666666666666442 24556666666666666665544 55666666666
Q ss_pred EcccCcCc
Q 039997 218 DVSYNNLS 225 (333)
Q Consensus 218 ~l~~N~l~ 225 (333)
.|..||-.
T Consensus 94 WL~ENPCc 101 (388)
T KOG2123|consen 94 WLDENPCC 101 (388)
T ss_pred hhccCCcc
Confidence 66666543
No 67
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.95 E-value=0.0032 Score=31.76 Aligned_cols=21 Identities=43% Similarity=0.602 Sum_probs=11.4
Q ss_pred ccceeeccccccccccchhhcC
Q 039997 27 NLRALLLKGNYLQGPIPHQLCQ 48 (333)
Q Consensus 27 ~L~~L~L~~N~i~~~~~~~f~~ 48 (333)
+|++|++++|+|+ .+|..|.+
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 3566666666666 33333443
No 68
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=95.89 E-value=0.0051 Score=67.07 Aligned_cols=68 Identities=22% Similarity=0.233 Sum_probs=45.8
Q ss_pred eccCCcccCCCC-CCCCCCCCCEEEcccCcCcccCCCCccccccCccccCCCCCCCCCCCCCCCCCCCCcCCCC
Q 039997 195 DLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPIPDKEQFSTFDESSYRGNLNLCCPPINKSCTNLPELLETS 267 (333)
Q Consensus 195 ~L~~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~l~~~~~~~n~~~c~~~~~~~c~~~~~~~~~~ 267 (333)
||++|+|+.+.+ .|..+++|+.|+|++|+|.|.|...+...|++..... -..+....|..|+.+.+..
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~WL~~WL~~~~v~-----v~~~~~i~CasP~~LrG~~ 69 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLARLPRWAEEKGVK-----VRQPEAALCAGPGALAGQP 69 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccccccHHHHHHHHhcCcc-----ccCCcccCCCCChHHCCCC
Confidence 678899988888 8888899999999999999999765544454432211 1112334566665555543
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.25 E-value=0.0038 Score=53.14 Aligned_cols=81 Identities=22% Similarity=0.168 Sum_probs=61.6
Q ss_pred CCcccEEECCCCcCCCCCCccccCCcccceeeccccccccccc-hhhcCCCCCCEEeCCCCcCCCCCCh-----hhhccc
Q 039997 1 DSALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIP-HQLCQLRKLSIMDLSHNRLNGSIPS-----CITNLL 74 (333)
Q Consensus 1 ~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~-~~f~~L~~L~~LdLs~N~l~~~~p~-----~l~~L~ 74 (333)
|+.|++|.||-|.|+.. ..|..++.|++|.|+.|.|..+.. .-+.++++|+.|-|..|.-.+..+. .+.-|+
T Consensus 40 Mp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LP 117 (388)
T KOG2123|consen 40 MPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLP 117 (388)
T ss_pred cccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcc
Confidence 56789999999999844 457888999999999999985532 3477899999999999988766553 244555
Q ss_pred cccccCCcc
Q 039997 75 FWKVGNGDL 83 (333)
Q Consensus 75 ~L~~~~n~~ 83 (333)
+|.-++|.-
T Consensus 118 nLkKLDnv~ 126 (388)
T KOG2123|consen 118 NLKKLDNVP 126 (388)
T ss_pred cchhccCcc
Confidence 665555543
No 70
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=95.23 E-value=0.012 Score=30.88 Aligned_cols=21 Identities=38% Similarity=0.433 Sum_probs=10.6
Q ss_pred cccceeeccccccccccchhh
Q 039997 26 SNLRALLLKGNYLQGPIPHQL 46 (333)
Q Consensus 26 ~~L~~L~L~~N~i~~~~~~~f 46 (333)
++|++|+|++|+|+.+.++.|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 445555555555554444444
No 71
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=95.23 E-value=0.012 Score=30.88 Aligned_cols=21 Identities=38% Similarity=0.433 Sum_probs=10.6
Q ss_pred cccceeeccccccccccchhh
Q 039997 26 SNLRALLLKGNYLQGPIPHQL 46 (333)
Q Consensus 26 ~~L~~L~L~~N~i~~~~~~~f 46 (333)
++|++|+|++|+|+.+.++.|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 445555555555554444444
No 72
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.74 E-value=0.015 Score=27.23 Aligned_cols=13 Identities=38% Similarity=0.608 Sum_probs=5.9
Q ss_pred cccEEECCCCcCC
Q 039997 3 ALEILDLRDNYFS 15 (333)
Q Consensus 3 ~L~~L~Ls~N~i~ 15 (333)
+|+.|+|++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4566666666554
No 73
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.70 E-value=0.025 Score=29.72 Aligned_cols=21 Identities=43% Similarity=0.589 Sum_probs=10.8
Q ss_pred cccceeecccccCCCCchHHH
Q 039997 165 RNIHGLNLSHNFLSGSIPESF 185 (333)
Q Consensus 165 ~~L~~L~Ls~N~l~~~~~~~~ 185 (333)
++|+.|+|++|+|+.+++..|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 345555555555554444443
No 74
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.70 E-value=0.025 Score=29.72 Aligned_cols=21 Identities=43% Similarity=0.589 Sum_probs=10.8
Q ss_pred cccceeecccccCCCCchHHH
Q 039997 165 RNIHGLNLSHNFLSGSIPESF 185 (333)
Q Consensus 165 ~~L~~L~Ls~N~l~~~~~~~~ 185 (333)
++|+.|+|++|+|+.+++..|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 345555555555554444443
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.73 E-value=0.001 Score=62.28 Aligned_cols=184 Identities=22% Similarity=0.211 Sum_probs=100.6
Q ss_pred ccEEECCCCcCCCCCC----ccccCCcccceeeccccccccccc----hhhcCC-CCCCEEeCCCCcCCCCC----Chhh
Q 039997 4 LEILDLRDNYFSGRIP----YGINEHSNLRALLLKGNYLQGPIP----HQLCQL-RKLSIMDLSHNRLNGSI----PSCI 70 (333)
Q Consensus 4 L~~L~Ls~N~i~~~~~----~~~~~l~~L~~L~L~~N~i~~~~~----~~f~~L-~~L~~LdLs~N~l~~~~----p~~l 70 (333)
+..|+|.+|.+..... ..+...++|+.|++++|.+.+... ..+... ..++.|++..+.++... .+.+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 6678888888874432 235567888889999998874322 223333 66777888888876432 2233
Q ss_pred h---ccccccccCCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEE
Q 039997 71 T---NLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLD 147 (333)
Q Consensus 71 ~---~L~~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 147 (333)
. .++.+++..|.+.............. ......++++|.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~--------------------------------------~~~~~~~le~L~ 210 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALES--------------------------------------AASPLSSLETLK 210 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhh--------------------------------------hhcccccHHHHh
Confidence 2 23333333333321000000000000 000135577777
Q ss_pred CCCCccccc----CCccccCccc-cceeecccccCCCC----chHHHhCC-CCCCEEeccCCcccCCCC-----CCCCCC
Q 039997 148 LSSNELTGD----ISSEIGDLRN-IHGLNLSHNFLSGS----IPESFSNL-KMIESLDLSHNKLNGQIP-----QLTELH 212 (333)
Q Consensus 148 Ls~n~l~~~----~~~~~~~l~~-L~~L~Ls~N~l~~~----~~~~~~~l-~~L~~L~L~~N~l~~~~~-----~~~~l~ 212 (333)
+++|.++.. ....+...++ +..++++.|++... ....+..+ ..++.++++.|.++.... .+...+
T Consensus 211 L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~ 290 (478)
T KOG4308|consen 211 LSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCR 290 (478)
T ss_pred hhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhH
Confidence 777776632 1233344444 66688888877643 12334444 566788888887765332 344556
Q ss_pred CCCEEEcccCcCc
Q 039997 213 SLSKFDVSYNNLS 225 (333)
Q Consensus 213 ~L~~L~l~~N~l~ 225 (333)
+++.+.+++|++.
T Consensus 291 ~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 291 QLEELSLSNNPLT 303 (478)
T ss_pred HHHHhhcccCccc
Confidence 7777888877765
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.48 E-value=0.0039 Score=51.74 Aligned_cols=60 Identities=18% Similarity=0.178 Sum_probs=38.3
Q ss_pred hccccEEECCCCcccccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcc
Q 039997 140 LEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKL 201 (333)
Q Consensus 140 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 201 (333)
++.++.||++.|.+. ..|..+..+..+..+++..|..+ ..|-++...++++.+++-.|.+
T Consensus 64 ~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 64 LTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEF 123 (326)
T ss_pred HHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcc
Confidence 344556667766666 56666666666666666666666 4456666666666666666654
No 77
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.90 E-value=0.0048 Score=51.21 Aligned_cols=84 Identities=19% Similarity=0.194 Sum_probs=72.1
Q ss_pred hccccEEECCCCcccccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEEEc
Q 039997 140 LEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDV 219 (333)
Q Consensus 140 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l 219 (333)
....+.||++.|++- -...-|+.+..+..|+++.|++. ..|..+..+..++.+++..|..+..+-++...+.++++++
T Consensus 41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhh
Confidence 355778999999987 55567888899999999999999 7788888888899999999988865559999999999999
Q ss_pred ccCcCc
Q 039997 220 SYNNLS 225 (333)
Q Consensus 220 ~~N~l~ 225 (333)
-+|+|.
T Consensus 119 k~~~~~ 124 (326)
T KOG0473|consen 119 KKTEFF 124 (326)
T ss_pred ccCcch
Confidence 999975
No 78
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=90.12 E-value=0.085 Score=27.00 Aligned_cols=13 Identities=38% Similarity=0.468 Sum_probs=4.7
Q ss_pred ccceeeccccccc
Q 039997 27 NLRALLLKGNYLQ 39 (333)
Q Consensus 27 ~L~~L~L~~N~i~ 39 (333)
+|++|+|++|+|+
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 3444444444443
No 79
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.71 E-value=0.085 Score=42.98 Aligned_cols=36 Identities=14% Similarity=0.154 Sum_probs=26.4
Q ss_pred cccceeeccccccccccchhhcCCCCCCEEeCCCCc
Q 039997 26 SNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNR 61 (333)
Q Consensus 26 ~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~ 61 (333)
..++.+|-++..|..+.-+.+..+++++.|.+.++.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck 136 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCK 136 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheecccc
Confidence 457788888888876666667777777777776664
No 80
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=89.32 E-value=0.31 Score=26.03 Aligned_cols=14 Identities=36% Similarity=0.525 Sum_probs=8.8
Q ss_pred CcccEEECCCCcCC
Q 039997 2 SALEILDLRDNYFS 15 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~ 15 (333)
++|++|||++|.|.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 45666666666665
No 81
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=88.26 E-value=0.77 Score=26.30 Aligned_cols=26 Identities=8% Similarity=0.166 Sum_probs=11.6
Q ss_pred hhhhhhhhHHHHHHHHHHHHhhhccc
Q 039997 280 VALYWSFVASCVTVMLGLLAILWVNP 305 (333)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (333)
..+++++++++++.++.+....+++|
T Consensus 6 IaIIv~V~vg~~iiii~~~~YaCcyk 31 (38)
T PF02439_consen 6 IAIIVAVVVGMAIIIICMFYYACCYK 31 (38)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34445555555544444444333333
No 82
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=87.92 E-value=0.33 Score=25.47 Aligned_cols=9 Identities=44% Similarity=0.700 Sum_probs=3.3
Q ss_pred CEEeCCCCc
Q 039997 53 SIMDLSHNR 61 (333)
Q Consensus 53 ~~LdLs~N~ 61 (333)
+.|++++|+
T Consensus 5 ~~L~L~~Nk 13 (26)
T smart00365 5 EELDLSQNK 13 (26)
T ss_pred CEEECCCCc
Confidence 333333333
No 83
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=87.05 E-value=0.48 Score=24.79 Aligned_cols=19 Identities=21% Similarity=0.464 Sum_probs=12.1
Q ss_pred CCcccEEECCCCcCCCCCCc
Q 039997 1 DSALEILDLRDNYFSGRIPY 20 (333)
Q Consensus 1 ~~~L~~L~Ls~N~i~~~~~~ 20 (333)
+++|+.|+.++|.++ .+|+
T Consensus 1 P~~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 1 PPSLKELNVSNNQLT-SLPE 19 (26)
T ss_pred CcccceeecCCCccc-cCcc
Confidence 356777777777776 4443
No 84
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=86.15 E-value=0.0082 Score=56.35 Aligned_cols=158 Identities=27% Similarity=0.275 Sum_probs=95.7
Q ss_pred ccceeeccccccccc----cchhhcCCCCCCEEeCCCCcCCCCCChhh--------hccccccccCCccccccccCCCCc
Q 039997 27 NLRALLLKGNYLQGP----IPHQLCQLRKLSIMDLSHNRLNGSIPSCI--------TNLLFWKVGNGDLYGLVERGRDFD 94 (333)
Q Consensus 27 ~L~~L~L~~N~i~~~----~~~~f~~L~~L~~LdLs~N~l~~~~p~~l--------~~L~~L~~~~n~~~~~~~~~~~~~ 94 (333)
.+.+|.|.+|.+..- ....+...+.|+.|+++.|.+...--..+ ..++.|++..+.++...
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g------- 160 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEG------- 160 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccc-------
Confidence 388999999999743 34567789999999999999973211111 11112222221111100
Q ss_pred ccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccc----cCCcc----ccCccc
Q 039997 95 LEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTG----DISSE----IGDLRN 166 (333)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~----~~~~~----~~~l~~ 166 (333)
.......-.. ...++.+|++.|.+.. ..+.. +....+
T Consensus 161 ----------------------------------~~~l~~~L~~-~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~ 205 (478)
T KOG4308|consen 161 ----------------------------------AAPLAAVLEK-NEHLTELDLSLNGLIELGLLVLSQALESAASPLSS 205 (478)
T ss_pred ----------------------------------hHHHHHHHhc-ccchhHHHHHhcccchhhhHHHhhhhhhhhccccc
Confidence 0000000000 3567778888888732 22233 335778
Q ss_pred cceeecccccCCCC----chHHHhCCCC-CCEEeccCCcccCC-----CCCCCCC-CCCCEEEcccCcCcc
Q 039997 167 IHGLNLSHNFLSGS----IPESFSNLKM-IESLDLSHNKLNGQ-----IPQLTEL-HSLSKFDVSYNNLSC 226 (333)
Q Consensus 167 L~~L~Ls~N~l~~~----~~~~~~~l~~-L~~L~L~~N~l~~~-----~~~~~~l-~~L~~L~l~~N~l~~ 226 (333)
+++|.++++.++.. ....+...++ +..+++..|.+... .+.+... ..++.++++.|.++.
T Consensus 206 le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~ 276 (478)
T KOG4308|consen 206 LETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITE 276 (478)
T ss_pred HHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccc
Confidence 99999999998832 2345555665 67799999988743 2244444 577999999999873
No 85
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=84.17 E-value=0.55 Score=35.86 Aligned_cols=6 Identities=17% Similarity=0.052 Sum_probs=2.1
Q ss_pred hhhccc
Q 039997 300 ILWVNP 305 (333)
Q Consensus 300 ~~~~~~ 305 (333)
++++.+
T Consensus 19 ~~~~~r 24 (130)
T PF12273_consen 19 FYCHNR 24 (130)
T ss_pred HHHHHH
Confidence 333333
No 86
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=82.14 E-value=0.84 Score=42.96 Aligned_cols=65 Identities=25% Similarity=0.222 Sum_probs=37.9
Q ss_pred CccccceeecccccCCCCch--HHHhCCCCCCEEeccCC--cccCCCC-CCCCCCCCCEEEcccCcCccc
Q 039997 163 DLRNIHGLNLSHNFLSGSIP--ESFSNLKMIESLDLSHN--KLNGQIP-QLTELHSLSKFDVSYNNLSCP 227 (333)
Q Consensus 163 ~l~~L~~L~Ls~N~l~~~~~--~~~~~l~~L~~L~L~~N--~l~~~~~-~~~~l~~L~~L~l~~N~l~~~ 227 (333)
+.+.+..++|++|++..+.. ..-+.-|+|..|+|++| .+..... .--....|+.|-+.|||+...
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccc
Confidence 45667777788887664421 12233467788888887 3332222 112234677788888887644
No 87
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=79.44 E-value=0.56 Score=27.33 Aligned_cols=21 Identities=19% Similarity=0.237 Sum_probs=10.3
Q ss_pred hhhhhhHHHHHHHHHHHHhhh
Q 039997 282 LYWSFVASCVTVMLGLLAILW 302 (333)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~ 302 (333)
+.+++++-+++++++++.+++
T Consensus 13 Ia~~VvVPV~vI~~vl~~~l~ 33 (40)
T PF08693_consen 13 IAVGVVVPVGVIIIVLGAFLF 33 (40)
T ss_pred EEEEEEechHHHHHHHHHHhh
Confidence 344455555555544544444
No 88
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=78.66 E-value=1.5 Score=32.87 Aligned_cols=14 Identities=7% Similarity=0.446 Sum_probs=6.0
Q ss_pred hhhhhhhhhHHHHH
Q 039997 279 MVALYWSFVASCVT 292 (333)
Q Consensus 279 ~~~~~~~~~~~~~~ 292 (333)
...+++++++|+++
T Consensus 66 i~~Ii~gv~aGvIg 79 (122)
T PF01102_consen 66 IIGIIFGVMAGVIG 79 (122)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred eeehhHHHHHHHHH
Confidence 34444444444433
No 89
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=76.63 E-value=1.6 Score=48.96 Aligned_cols=33 Identities=27% Similarity=0.283 Sum_probs=17.3
Q ss_pred ecccccCCCCchHHHhCCCCCCEEeccCCcccC
Q 039997 171 NLSHNFLSGSIPESFSNLKMIESLDLSHNKLNG 203 (333)
Q Consensus 171 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 203 (333)
||++|+|+.+.+..|..+++|+.|+|++|.+..
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 345555555555555555555555555555443
No 90
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=75.29 E-value=4.5 Score=30.34 Aligned_cols=23 Identities=4% Similarity=0.215 Sum_probs=13.5
Q ss_pred hhhhhhhHHHHHHHHHHHHhhhc
Q 039997 281 ALYWSFVASCVTVMLGLLAILWV 303 (333)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~ 303 (333)
..+.++++|+++++++++++++|
T Consensus 64 ~~i~~Ii~gv~aGvIg~Illi~y 86 (122)
T PF01102_consen 64 PAIIGIIFGVMAGVIGIILLISY 86 (122)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cceeehhHHHHHHHHHHHHHHHH
Confidence 34556667777666666554443
No 91
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=74.68 E-value=1.7 Score=40.89 Aligned_cols=35 Identities=23% Similarity=0.230 Sum_probs=18.6
Q ss_pred Ccccceeeccccc-cccc-cchhhcCCCCCCEEeCCC
Q 039997 25 HSNLRALLLKGNY-LQGP-IPHQLCQLRKLSIMDLSH 59 (333)
Q Consensus 25 l~~L~~L~L~~N~-i~~~-~~~~f~~L~~L~~LdLs~ 59 (333)
.+.|+.|.+.... +... .-......++|+.|+++.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 223 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG 223 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence 4566666666553 2211 123345566677777665
No 92
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=74.34 E-value=1.2 Score=33.11 Aligned_cols=28 Identities=25% Similarity=0.082 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHhhhcccccchhhHH
Q 039997 286 FVASCVTVMLGLLAILWVNPYWRKLWFY 313 (333)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (333)
.+.++++++.++..++++||.+|++.|.
T Consensus 84 sal~v~lVl~llsg~lv~rrcrrr~~~t 111 (129)
T PF12191_consen 84 SALSVVLVLALLSGFLVWRRCRRREKFT 111 (129)
T ss_dssp ----------------------------
T ss_pred hHHHHHHHHHHHHHHHHHhhhhccccCC
Confidence 3444444444555566666655555544
No 93
>PF15102 TMEM154: TMEM154 protein family
Probab=72.27 E-value=2.1 Score=32.95 Aligned_cols=16 Identities=13% Similarity=0.221 Sum_probs=7.1
Q ss_pred HHHHHHhhhcccccch
Q 039997 294 MLGLLAILWVNPYWRK 309 (333)
Q Consensus 294 ~~~~~~~~~~~~~~~~ 309 (333)
++++++++.++||||.
T Consensus 72 Ll~vV~lv~~~kRkr~ 87 (146)
T PF15102_consen 72 LLSVVCLVIYYKRKRT 87 (146)
T ss_pred HHHHHHheeEEeeccc
Confidence 3333444444455544
No 94
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=71.74 E-value=2.3 Score=30.52 Aligned_cols=12 Identities=17% Similarity=0.177 Sum_probs=5.2
Q ss_pred hhhhhHHHHHHH
Q 039997 283 YWSFVASCVTVM 294 (333)
Q Consensus 283 ~~~~~~~~~~~~ 294 (333)
+.++++++++++
T Consensus 68 iagi~vg~~~~v 79 (96)
T PTZ00382 68 IAGISVAVVAVV 79 (96)
T ss_pred EEEEEeehhhHH
Confidence 344444444443
No 95
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=70.62 E-value=1.4 Score=34.13 Aligned_cols=22 Identities=9% Similarity=-0.074 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHhhhcccccch
Q 039997 288 ASCVTVMLGLLAILWVNPYWRK 309 (333)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~ 309 (333)
+++.++++++++++++++|.++
T Consensus 58 VGg~ill~il~lvf~~c~r~kk 79 (154)
T PF04478_consen 58 VGGPILLGILALVFIFCIRRKK 79 (154)
T ss_pred ccHHHHHHHHHhheeEEEeccc
Confidence 3333333333444444444433
No 96
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=70.52 E-value=6.1 Score=27.74 Aligned_cols=31 Identities=3% Similarity=-0.010 Sum_probs=19.0
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHhhhcccccc
Q 039997 278 DMVALYWSFVASCVTVMLGLLAILWVNPYWR 308 (333)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (333)
...+.++..+.+++++++++.++++.+.||+
T Consensus 39 ~ayWpyLA~GGG~iLilIii~Lv~CC~~K~K 69 (98)
T PF07204_consen 39 VAYWPYLAAGGGLILILIIIALVCCCRAKHK 69 (98)
T ss_pred HhhhHHhhccchhhhHHHHHHHHHHhhhhhh
Confidence 3344555556666666666666666666666
No 97
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.99 E-value=1.2 Score=36.57 Aligned_cols=70 Identities=19% Similarity=0.148 Sum_probs=48.1
Q ss_pred cccEEECCCCcCCCCCCccccCCcccceeeccccc------cccccchhhcCCCCCCEEeCCCC-cCCCCCChhhhcccc
Q 039997 3 ALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNY------LQGPIPHQLCQLRKLSIMDLSHN-RLNGSIPSCITNLLF 75 (333)
Q Consensus 3 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~------i~~~~~~~f~~L~~L~~LdLs~N-~l~~~~p~~l~~L~~ 75 (333)
.++.+|-++..|..+.-..+.+++.++.|.+.+++ ++.+.+ ..++|+.|+++.| +|+..--.++..+++
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~----~~~~L~~L~lsgC~rIT~~GL~~L~~lkn 177 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGG----LAPSLQDLDLSGCPRITDGGLACLLKLKN 177 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcc----cccchheeeccCCCeechhHHHHHHHhhh
Confidence 46788899998887766778888888888888775 222222 4589999999976 466443344444443
Q ss_pred c
Q 039997 76 W 76 (333)
Q Consensus 76 L 76 (333)
|
T Consensus 178 L 178 (221)
T KOG3864|consen 178 L 178 (221)
T ss_pred h
Confidence 3
No 98
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=66.41 E-value=7.3 Score=26.45 Aligned_cols=17 Identities=0% Similarity=0.280 Sum_probs=6.8
Q ss_pred hhHHHHHHHHHHHHhhh
Q 039997 286 FVASCVTVMLGLLAILW 302 (333)
Q Consensus 286 ~~~~~~~~~~~~~~~~~ 302 (333)
+++++++++++++++++
T Consensus 6 ~~~g~~~ll~~v~~~~~ 22 (75)
T PF14575_consen 6 IIVGVLLLLVLVIIVIV 22 (75)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhheeEEE
Confidence 34444444433433333
No 99
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=66.05 E-value=2 Score=27.86 Aligned_cols=21 Identities=14% Similarity=0.178 Sum_probs=0.0
Q ss_pred hhhhhhHHHHHHHHHHHHhhh
Q 039997 282 LYWSFVASCVTVMLGLLAILW 302 (333)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~ 302 (333)
++.++++++++++++++++++
T Consensus 14 vIaG~Vvgll~ailLIlf~iy 34 (64)
T PF01034_consen 14 VIAGGVVGLLFAILLILFLIY 34 (64)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444443333333333
No 100
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=62.45 E-value=5.7 Score=37.24 Aligned_cols=85 Identities=21% Similarity=0.138 Sum_probs=48.3
Q ss_pred hccccEEECCCC--ccccc---CCccccCccccceeeccccc-CCCCchHHHhC-CCCCCEEeccCCc-ccCCCC--CCC
Q 039997 140 LEYMAGLDLSSN--ELTGD---ISSEIGDLRNIHGLNLSHNF-LSGSIPESFSN-LKMIESLDLSHNK-LNGQIP--QLT 209 (333)
Q Consensus 140 l~~L~~L~Ls~n--~l~~~---~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~-l~~L~~L~L~~N~-l~~~~~--~~~ 209 (333)
.+.|+.|+++++ ..... .......+++|++|++++.. ++...-..+.. .++|+.|.+.++. ++...- ...
T Consensus 213 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~ 292 (482)
T KOG1947|consen 213 CPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAE 292 (482)
T ss_pred CchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHH
Confidence 567788888762 11111 11233455778888888877 55433333332 6778888766665 433222 334
Q ss_pred CCCCCCEEEcccCcC
Q 039997 210 ELHSLSKFDVSYNNL 224 (333)
Q Consensus 210 ~l~~L~~L~l~~N~l 224 (333)
..+.|+.|+++++..
T Consensus 293 ~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 293 RCPSLRELDLSGCHG 307 (482)
T ss_pred hcCcccEEeeecCcc
Confidence 566788888876543
No 101
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=60.90 E-value=3 Score=34.25 Aligned_cols=24 Identities=29% Similarity=0.488 Sum_probs=10.9
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHhh
Q 039997 278 DMVALYWSFVASCVTVMLGLLAIL 301 (333)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~ 301 (333)
+...++++++.|++.+++++++++
T Consensus 35 d~~~I~iaiVAG~~tVILVI~i~v 58 (221)
T PF08374_consen 35 DYVKIMIAIVAGIMTVILVIFIVV 58 (221)
T ss_pred cceeeeeeeecchhhhHHHHHHHH
Confidence 344445555555444444443333
No 102
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=56.83 E-value=12 Score=26.77 Aligned_cols=17 Identities=29% Similarity=0.362 Sum_probs=6.9
Q ss_pred HHHHhhhcccccchhhH
Q 039997 296 GLLAILWVNPYWRKLWF 312 (333)
Q Consensus 296 ~~~~~~~~~~~~~~~~~ 312 (333)
+++++...+..|++.++
T Consensus 32 lLIalaaKC~~~~k~~~ 48 (102)
T PF15176_consen 32 LLIALAAKCPVWYKYLA 48 (102)
T ss_pred HHHHHHHHhHHHHHHHh
Confidence 33444444444443333
No 103
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=56.67 E-value=10 Score=33.59 Aligned_cols=31 Identities=19% Similarity=0.154 Sum_probs=15.2
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHhhhcccccch
Q 039997 278 DMVALYWSFVASCVTVMLGLLAILWVNPYWRK 309 (333)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (333)
..+.++++++.++++++ +++++++.|||.+.
T Consensus 271 ~~vPIaVG~~La~lvli-vLiaYli~Rrr~~~ 301 (306)
T PF01299_consen 271 DLVPIAVGAALAGLVLI-VLIAYLIGRRRSRA 301 (306)
T ss_pred chHHHHHHHHHHHHHHH-HHHhheeEeccccc
Confidence 34555666655544444 34444444444433
No 104
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=55.75 E-value=3.8 Score=35.75 Aligned_cols=24 Identities=13% Similarity=0.282 Sum_probs=0.0
Q ss_pred hhhhhhHHHHHHHHHHHHhhhccc
Q 039997 282 LYWSFVASCVTVMLGLLAILWVNP 305 (333)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~ 305 (333)
++.++++++++++++++++++++|
T Consensus 149 ~IpaVVI~~iLLIA~iIa~icyrr 172 (290)
T PF05454_consen 149 FIPAVVIAAILLIAGIIACICYRR 172 (290)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Confidence 334444444444444444444443
No 105
>PTZ00370 STEVOR; Provisional
Probab=54.32 E-value=11 Score=32.57 Aligned_cols=18 Identities=11% Similarity=0.418 Sum_probs=8.8
Q ss_pred HHHHhhhcccccchhhHH
Q 039997 296 GLLAILWVNPYWRKLWFY 313 (333)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~ 313 (333)
+++..+|.+||++.-|.+
T Consensus 271 liilYiwlyrrRK~swkh 288 (296)
T PTZ00370 271 LIILYIWLYRRRKNSWKH 288 (296)
T ss_pred HHHHHHHHHHhhcchhHH
Confidence 334445555555555543
No 106
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=53.34 E-value=21 Score=25.57 Aligned_cols=33 Identities=15% Similarity=0.284 Sum_probs=21.5
Q ss_pred hhhhhHHHHHHHHHHHHhhhcccccchhhHHHH
Q 039997 283 YWSFVASCVTVMLGLLAILWVNPYWRKLWFYFI 315 (333)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (333)
.|.+.+|++++++++-+++.+..++..+|-++.
T Consensus 16 sW~~LVGVv~~al~~SlLIalaaKC~~~~k~~~ 48 (102)
T PF15176_consen 16 SWPFLVGVVVTALVTSLLIALAAKCPVWYKYLA 48 (102)
T ss_pred ccHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 455667777777777777777666666555443
No 107
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=52.69 E-value=6.7 Score=37.19 Aligned_cols=63 Identities=29% Similarity=0.246 Sum_probs=41.6
Q ss_pred hccccEEECCCCcccccCC--ccccCccccceeecccc--cCCCCc-hHHHhCCCCCCEEeccCCcccC
Q 039997 140 LEYMAGLDLSSNELTGDIS--SEIGDLRNIHGLNLSHN--FLSGSI-PESFSNLKMIESLDLSHNKLNG 203 (333)
Q Consensus 140 l~~L~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~Ls~N--~l~~~~-~~~~~~l~~L~~L~L~~N~l~~ 203 (333)
.+.+..+.|++|++..+.. ..-+..|+|+.|+|++| .+.... -..+..+ .|+.|-+.+|.+..
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l-~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGL-PLEELVLEGNPLCT 284 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCC-CHHHeeecCCcccc
Confidence 4667788999999875432 23345689999999999 444211 1123333 37889999998854
No 108
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=52.03 E-value=11 Score=32.59 Aligned_cols=14 Identities=21% Similarity=0.762 Sum_probs=6.1
Q ss_pred HHhhhcccccchhh
Q 039997 298 LAILWVNPYWRKLW 311 (333)
Q Consensus 298 ~~~~~~~~~~~~~~ 311 (333)
+..+|.+||++.-|
T Consensus 277 iLYiWlyrrRK~sw 290 (295)
T TIGR01478 277 ILYIWLYRRRKKSW 290 (295)
T ss_pred HHHHHHHHhhcccc
Confidence 33444444444443
No 109
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=51.62 E-value=22 Score=30.79 Aligned_cols=40 Identities=20% Similarity=0.033 Sum_probs=24.5
Q ss_pred hhhHHHHHHHHHHHHhhhcccccchhhHHHHHhhheeEEE
Q 039997 285 SFVASCVTVMLGLLAILWVNPYWRKLWFYFIEECIDLRYY 324 (333)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (333)
++++|++++.++..++++..|..|++-...|.+.-..+..
T Consensus 218 g~~~G~~~L~ll~~lv~~~vr~krk~k~~eMEr~A~~gE~ 257 (278)
T PF06697_consen 218 GVVGGVVLLGLLSLLVAMLVRYKRKKKIEEMERRAEEGEA 257 (278)
T ss_pred EehHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhccCce
Confidence 3345555444444455566666667777788777667776
No 110
>PTZ00046 rifin; Provisional
Probab=51.13 E-value=14 Score=33.13 Aligned_cols=18 Identities=33% Similarity=0.353 Sum_probs=7.2
Q ss_pred hhhhHHHHHHHHHHHHhh
Q 039997 284 WSFVASCVTVMLGLLAIL 301 (333)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~ 301 (333)
.++++.+++++++++..+
T Consensus 319 aSiiAIvVIVLIMvIIYL 336 (358)
T PTZ00046 319 ASIVAIVVIVLIMVIIYL 336 (358)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333344444444433
No 111
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=49.71 E-value=16 Score=32.80 Aligned_cols=17 Identities=18% Similarity=0.254 Sum_probs=6.6
Q ss_pred hhhhHHHHHHHHHHHHh
Q 039997 284 WSFVASCVTVMLGLLAI 300 (333)
Q Consensus 284 ~~~~~~~~~~~~~~~~~ 300 (333)
.++++.+++++++++..
T Consensus 314 aSiIAIvvIVLIMvIIY 330 (353)
T TIGR01477 314 ASIIAILIIVLIMVIIY 330 (353)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333344334433
No 112
>PHA03164 hypothetical protein; Provisional
Probab=48.38 E-value=11 Score=25.17 Aligned_cols=9 Identities=22% Similarity=0.652 Sum_probs=4.7
Q ss_pred CCCCCCCCc
Q 039997 255 KSCTNLPEL 263 (333)
Q Consensus 255 ~~c~~~~~~ 263 (333)
..|-.|+..
T Consensus 35 veclpPpqi 43 (88)
T PHA03164 35 VECLPPPQI 43 (88)
T ss_pred ceecCCccc
Confidence 456655544
No 113
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=47.91 E-value=15 Score=25.47 Aligned_cols=20 Identities=5% Similarity=0.099 Sum_probs=7.1
Q ss_pred hhhhHHHHHHHHHHHHhhhc
Q 039997 284 WSFVASCVTVMLGLLAILWV 303 (333)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~ 303 (333)
+.++.++.+.++++-++++.
T Consensus 37 ~lvI~~iFil~VilwfvCC~ 56 (94)
T PF05393_consen 37 FLVICGIFILLVILWFVCCK 56 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 114
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=42.44 E-value=1.6e+02 Score=27.83 Aligned_cols=61 Identities=26% Similarity=0.152 Sum_probs=42.3
Q ss_pred cccEEECCCCcCCCCCCccccCC---cccceeeccccccc---cccchhhcCCCCCCEEeCCCCcCC
Q 039997 3 ALEILDLRDNYFSGRIPYGINEH---SNLRALLLKGNYLQ---GPIPHQLCQLRKLSIMDLSHNRLN 63 (333)
Q Consensus 3 ~L~~L~Ls~N~i~~~~~~~~~~l---~~L~~L~L~~N~i~---~~~~~~f~~L~~L~~LdLs~N~l~ 63 (333)
.+.++||+.|.....+|.....+ .-++.++.+.-.+. ...+..+..-++|++.+++.|..+
T Consensus 215 ~lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s 281 (553)
T KOG4242|consen 215 WLTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTS 281 (553)
T ss_pred cccccccccCCCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCCC
Confidence 35678999998887777665432 35777888877765 223444556678888999888754
No 115
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=42.27 E-value=6.7 Score=28.65 Aligned_cols=8 Identities=38% Similarity=0.522 Sum_probs=0.0
Q ss_pred HHHhhhcc
Q 039997 297 LLAILWVN 304 (333)
Q Consensus 297 ~~~~~~~~ 304 (333)
+++-+|++
T Consensus 40 LliGCWYc 47 (118)
T PF14991_consen 40 LLIGCWYC 47 (118)
T ss_dssp --------
T ss_pred HHHhheee
Confidence 33444443
No 116
>PF10725 DUF2517: Protein of unknown function (DUF2517); InterPro: IPR019663 This entry represents proteins conserved in Proteobacteria and includes the predicted protein YbfA. The function is not known.
Probab=35.27 E-value=48 Score=21.24 Aligned_cols=21 Identities=5% Similarity=0.093 Sum_probs=14.5
Q ss_pred hhcccccchhhHHHHHhhhee
Q 039997 301 LWVNPYWRKLWFYFIEECIDL 321 (333)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~ 321 (333)
+..+++-|.+++.|+.+.|-+
T Consensus 27 vMLf~~dRArfYSyLhrvW~K 47 (63)
T PF10725_consen 27 VMLFRSDRARFYSYLHRVWSK 47 (63)
T ss_pred eeeeecchhHHHHHHHHHHHh
Confidence 334446677888899888754
No 117
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=34.81 E-value=25 Score=27.18 Aligned_cols=16 Identities=13% Similarity=0.212 Sum_probs=8.7
Q ss_pred HHHHHHHhhhcccccc
Q 039997 293 VMLGLLAILWVNPYWR 308 (333)
Q Consensus 293 ~~~~~~~~~~~~~~~~ 308 (333)
+++..+.++|+|+++.
T Consensus 22 Ll~cgiGcvwhwkhr~ 37 (158)
T PF11770_consen 22 LLLCGIGCVWHWKHRD 37 (158)
T ss_pred HHHHhcceEEEeeccC
Confidence 3444455667666554
No 118
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=34.54 E-value=34 Score=25.94 Aligned_cols=22 Identities=0% Similarity=-0.074 Sum_probs=10.6
Q ss_pred hhHHHHHHHHHHHHhhhccccc
Q 039997 286 FVASCVTVMLGLLAILWVNPYW 307 (333)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~ 307 (333)
+++++++++++++++--+|++.
T Consensus 8 ii~~i~l~~~~~~~~~rRR~r~ 29 (130)
T PF12273_consen 8 IIVAILLFLFLFYCHNRRRRRR 29 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 3344444444555555555544
No 119
>PHA02947 S-S bond formation pathway protein; Provisional
Probab=34.32 E-value=21 Score=29.47 Aligned_cols=23 Identities=9% Similarity=0.079 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHhhhcccccchh
Q 039997 288 ASCVTVMLGLLAILWVNPYWRKL 310 (333)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~ 310 (333)
..++++++++++++..+|+-+.+
T Consensus 184 ~~~~i~~i~~i~i~~irR~i~lk 206 (215)
T PHA02947 184 GVVIILIIFVIAICSIKRKINLK 206 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHheee
Confidence 33334444445455554444433
No 120
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=34.11 E-value=79 Score=24.28 Aligned_cols=6 Identities=33% Similarity=0.274 Sum_probs=2.2
Q ss_pred hhheeE
Q 039997 317 ECIDLR 322 (333)
Q Consensus 317 ~~~~~~ 322 (333)
....++
T Consensus 66 ediQfi 71 (189)
T PF05568_consen 66 EDIQFI 71 (189)
T ss_pred hccccc
Confidence 333333
No 121
>PHA02662 ORF131 putative membrane protein; Provisional
Probab=32.98 E-value=21 Score=29.53 Aligned_cols=22 Identities=23% Similarity=0.386 Sum_probs=12.0
Q ss_pred HHHHHHHHhhhcccccchhhHH
Q 039997 292 TVMLGLLAILWVNPYWRKLWFY 313 (333)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~ 313 (333)
+++++++.+...+|+.+.+|-|
T Consensus 196 i~~i~vv~i~~irR~i~lkYrY 217 (226)
T PHA02662 196 VTVLGVVAVSLLRRALRIRFRY 217 (226)
T ss_pred HHHHHHHHHHHHHHHhheeeee
Confidence 4444555556666655555544
No 122
>PRK14762 membrane protein; Provisional
Probab=31.16 E-value=74 Score=16.33 Aligned_cols=16 Identities=13% Similarity=0.328 Sum_probs=7.3
Q ss_pred hhhhhHHHHHHHHHHH
Q 039997 283 YWSFVASCVTVMLGLL 298 (333)
Q Consensus 283 ~~~~~~~~~~~~~~~~ 298 (333)
.|.+.+.+.++++++.
T Consensus 5 lw~i~iifligllvvt 20 (27)
T PRK14762 5 LWAVLIIFLIGLLVVT 20 (27)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444443
No 123
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=31.05 E-value=88 Score=18.99 Aligned_cols=13 Identities=15% Similarity=0.368 Sum_probs=5.0
Q ss_pred HHHhhhcccccch
Q 039997 297 LLAILWVNPYWRK 309 (333)
Q Consensus 297 ~~~~~~~~~~~~~ 309 (333)
+.+++|.+++.++
T Consensus 23 ~gi~~w~~~~~~k 35 (49)
T PF05545_consen 23 IGIVIWAYRPRNK 35 (49)
T ss_pred HHHHHHHHcccch
Confidence 3334444333333
No 124
>PF07213 DAP10: DAP10 membrane protein; InterPro: IPR009861 This family consists of several mammalian DAP10 membrane proteins. In activated mouse natural killer (NK) cells, the NKG2D receptor associates with two intracellular adaptors, DAP10 and DAP12, which trigger phosphatidyl inositol 3 kinase (PI3K) and Syk family protein tyrosine kinases, respectively. It has been suggested that the DAP10-PI3K pathway is sufficient to initiate NKG2D-mediated killing of target cells [].
Probab=29.96 E-value=73 Score=21.77 Aligned_cols=13 Identities=23% Similarity=0.204 Sum_probs=5.8
Q ss_pred hhhhhhhHHHHHH
Q 039997 281 ALYWSFVASCVTV 293 (333)
Q Consensus 281 ~~~~~~~~~~~~~ 293 (333)
..+.+++.+=+++
T Consensus 34 g~LaGiV~~D~vl 46 (79)
T PF07213_consen 34 GLLAGIVAADAVL 46 (79)
T ss_pred HHHHHHHHHHHHH
Confidence 3445544443333
No 125
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=28.05 E-value=24 Score=32.56 Aligned_cols=22 Identities=23% Similarity=0.267 Sum_probs=12.1
Q ss_pred hhhhhhhHHHHHHHHHHHHhhh
Q 039997 281 ALYWSFVASCVTVMLGLLAILW 302 (333)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~ 302 (333)
..+.+|++++++|+..++.|+.
T Consensus 367 gaIaGIsvavvvvVgglvGfLc 388 (397)
T PF03302_consen 367 GAIAGISVAVVVVVGGLVGFLC 388 (397)
T ss_pred cceeeeeehhHHHHHHHHHHHh
Confidence 3455566665655555555554
No 126
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=27.27 E-value=49 Score=16.83 Aligned_cols=12 Identities=33% Similarity=0.315 Sum_probs=9.7
Q ss_pred CCCCEEeCCCCc
Q 039997 50 RKLSIMDLSHNR 61 (333)
Q Consensus 50 ~~L~~LdLs~N~ 61 (333)
++|+.|+++++.
T Consensus 2 ~~L~~L~l~~C~ 13 (26)
T smart00367 2 PNLRELDLSGCT 13 (26)
T ss_pred CCCCEeCCCCCC
Confidence 678888888875
No 127
>PF11980 DUF3481: Domain of unknown function (DUF3481); InterPro: IPR022579 This domain of unknown function is located in the C terminus of the eukaryotic neuropilin receptor family of proteins. It is found in association with PF00754 from PFAM, PF00431 from PFAM and PF00629 from PFAM. There are two completely conserved residues (Y and E) that may be functionally important.
Probab=26.67 E-value=51 Score=22.73 Aligned_cols=12 Identities=8% Similarity=0.052 Sum_probs=4.3
Q ss_pred hhhhhhhHHHHH
Q 039997 281 ALYWSFVASCVT 292 (333)
Q Consensus 281 ~~~~~~~~~~~~ 292 (333)
++.+..+.++++
T Consensus 16 ~yyiiA~gga~l 27 (87)
T PF11980_consen 16 WYYIIAMGGALL 27 (87)
T ss_pred eeHHHhhccHHH
Confidence 333333333333
No 128
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=26.39 E-value=22 Score=33.31 Aligned_cols=8 Identities=13% Similarity=0.085 Sum_probs=0.0
Q ss_pred hcccccch
Q 039997 302 WVNPYWRK 309 (333)
Q Consensus 302 ~~~~~~~~ 309 (333)
+.++++++
T Consensus 375 c~~~rrrR 382 (439)
T PF02480_consen 375 CLRCRRRR 382 (439)
T ss_dssp --------
T ss_pred eeeehhcc
Confidence 33333333
No 129
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=26.37 E-value=44 Score=32.49 Aligned_cols=27 Identities=11% Similarity=0.314 Sum_probs=13.9
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHhhhc
Q 039997 277 VDMVALYWSFVASCVTVMLGLLAILWV 303 (333)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (333)
....++++++++-++++++++++++|.
T Consensus 266 ~~NlWII~gVlvPv~vV~~Iiiil~~~ 292 (684)
T PF12877_consen 266 PNNLWIIAGVLVPVLVVLLIIIILYWK 292 (684)
T ss_pred CCCeEEEehHhHHHHHHHHHHHHHHHH
Confidence 345555566655555554444444443
No 130
>PF15102 TMEM154: TMEM154 protein family
Probab=26.25 E-value=30 Score=26.76 Aligned_cols=29 Identities=17% Similarity=0.309 Sum_probs=16.8
Q ss_pred hhhhhHHHHHHHHHHHHhhhcccccchhh
Q 039997 283 YWSFVASCVTVMLGLLAILWVNPYWRKLW 311 (333)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (333)
++.+++..++++++++++++...+.|||.
T Consensus 58 iLmIlIP~VLLvlLLl~vV~lv~~~kRkr 86 (146)
T PF15102_consen 58 ILMILIPLVLLVLLLLSVVCLVIYYKRKR 86 (146)
T ss_pred EEEEeHHHHHHHHHHHHHHHheeEEeecc
Confidence 33344555666666677776666655543
No 131
>PF05663 DUF809: Protein of unknown function (DUF809); InterPro: IPR008527 This family consists of several proteins of unknown function Raphanus sativus (Radish) and Brassica napus (Rape).
Probab=24.35 E-value=1.2e+02 Score=21.53 Aligned_cols=20 Identities=15% Similarity=0.218 Sum_probs=9.6
Q ss_pred HHHHHhhheeEEEEEEEEEE
Q 039997 312 FYFIEECIDLRYYWLFKYVI 331 (333)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~ 331 (333)
...++-.....-+|-+||.|
T Consensus 50 lrtmrhleklkipyefqygw 69 (138)
T PF05663_consen 50 LRTMRHLEKLKIPYEFQYGW 69 (138)
T ss_pred HHHHHHHHhcCCCeeeeecc
Confidence 33444333344455566655
No 132
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=24.07 E-value=1.6e+02 Score=22.76 Aligned_cols=17 Identities=18% Similarity=0.077 Sum_probs=6.9
Q ss_pred HHHhhhcccccchhhHH
Q 039997 297 LLAILWVNPYWRKLWFY 313 (333)
Q Consensus 297 ~~~~~~~~~~~~~~~~~ 313 (333)
++++..++++++.+|-.
T Consensus 36 ~~~~~~~r~~~~~~yrr 52 (146)
T PF14316_consen 36 LLLWRLWRRWRRNRYRR 52 (146)
T ss_pred HHHHHHHHHHHccHHHH
Confidence 33333334444444443
No 133
>smart00082 LRRCT Leucine rich repeat C-terminal domain.
Probab=24.02 E-value=27 Score=21.11 Aligned_cols=37 Identities=16% Similarity=0.244 Sum_probs=19.6
Q ss_pred CcCcccCCCCccccccCccccCCCCCCCCCCCCCCCCCCCCcC
Q 039997 222 NNLSCPIPDKEQFSTFDESSYRGNLNLCCPPINKSCTNLPELL 264 (333)
Q Consensus 222 N~l~~~~~~~~~~~~l~~~~~~~n~~~c~~~~~~~c~~~~~~~ 264 (333)
|+|.|.|...+...++.. + ..-..+....|..|+...
T Consensus 1 NP~~CdC~l~~~~~w~~~-----~-~~~~~~~~~~C~~P~~~~ 37 (51)
T smart00082 1 NPFICDCELRWLLRWLQA-----N-EHLQDPVSLRCASPSSLR 37 (51)
T ss_pred CCccCcCCchHHHHHHHh-----C-CccCCCCCCEeCCcHHHH
Confidence 789999976544444433 1 001112356777665543
No 134
>PF14610 DUF4448: Protein of unknown function (DUF4448)
Probab=23.94 E-value=31 Score=28.10 Aligned_cols=16 Identities=13% Similarity=0.218 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHhhhc
Q 039997 288 ASCVTVMLGLLAILWV 303 (333)
Q Consensus 288 ~~~~~~~~~~~~~~~~ 303 (333)
++++++++++++++++
T Consensus 166 vvv~~~~~~~~~~~~~ 181 (189)
T PF14610_consen 166 VVVVVLALIMYGFFFW 181 (189)
T ss_pred HHHHHHHHHHHhhhee
Confidence 3333333333333333
No 135
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=23.28 E-value=59 Score=26.95 Aligned_cols=29 Identities=7% Similarity=0.154 Sum_probs=17.9
Q ss_pred chhhhhhhhhhhHHHHHHHHHHHHhhhcc
Q 039997 276 AVDMVALYWSFVASCVTVMLGLLAILWVN 304 (333)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (333)
....+..+++.++++++++++++++.++|
T Consensus 36 ~~~I~iaiVAG~~tVILVI~i~v~vR~CR 64 (221)
T PF08374_consen 36 YVKIMIAIVAGIMTVILVIFIVVLVRYCR 64 (221)
T ss_pred ceeeeeeeecchhhhHHHHHHHHHHHHHh
Confidence 34455555556666677777777777544
No 136
>PHA03271 envelope glycoprotein C; Provisional
Probab=23.21 E-value=61 Score=29.80 Aligned_cols=8 Identities=13% Similarity=0.422 Sum_probs=4.9
Q ss_pred CCCCCCCC
Q 039997 251 PPINKSCT 258 (333)
Q Consensus 251 ~~~~~~c~ 258 (333)
.|..|+|.
T Consensus 420 gpveYTCr 427 (490)
T PHA03271 420 QKTKYTCR 427 (490)
T ss_pred CceeEEEE
Confidence 34567776
No 137
>PF15050 SCIMP: SCIMP protein
Probab=22.85 E-value=1e+02 Score=22.92 Aligned_cols=15 Identities=13% Similarity=-0.046 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHhhh
Q 039997 288 ASCVTVMLGLLAILW 302 (333)
Q Consensus 288 ~~~~~~~~~~~~~~~ 302 (333)
+.+.+++.+++.+++
T Consensus 17 I~vS~~lglIlyCvc 31 (133)
T PF15050_consen 17 ILVSVVLGLILYCVC 31 (133)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 138
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=22.72 E-value=94 Score=21.12 Aligned_cols=8 Identities=38% Similarity=0.788 Sum_probs=3.2
Q ss_pred hhhccccc
Q 039997 300 ILWVNPYW 307 (333)
Q Consensus 300 ~~~~~~~~ 307 (333)
++.|+.+|
T Consensus 23 ~lHY~sk~ 30 (75)
T PF06667_consen 23 ILHYRSKW 30 (75)
T ss_pred HHHHHHhc
Confidence 33443333
No 139
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=22.46 E-value=73 Score=24.73 Aligned_cols=29 Identities=14% Similarity=-0.002 Sum_probs=20.0
Q ss_pred hhhhHHHHHHHHHHHHhhhcccccchhhH
Q 039997 284 WSFVASCVTVMLGLLAILWVNPYWRKLWF 312 (333)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (333)
+.+++|+.++++++++.+-+.-.|+++..
T Consensus 10 v~i~igi~Ll~lLl~cgiGcvwhwkhr~~ 38 (158)
T PF11770_consen 10 VAISIGISLLLLLLLCGIGCVWHWKHRDS 38 (158)
T ss_pred HHHHHHHHHHHHHHHHhcceEEEeeccCc
Confidence 34566667777777777777777777773
No 140
>PF02158 Neuregulin: Neuregulin family; InterPro: IPR002154 Neuregulins are a sub-family of EGF-like molecules that have been shown to play multiple essential roles in vertebrate embryogenesis including: cardiac development, Schwann cell and oligodendrocyte differentiation, some aspects of neuronal development, as well as the formation of neuromuscular synapses [, ]. Included in the family are heregulin; neu differentiation factor; acetylcholine receptor synthesis stimulator; glial growth factor; and sensory and motor-neuron derived factor []. Multiple family members are generated by alternate splicing or by use of several cell type-specific transcription initiation sites. In general, they bind to and activate the erbB family of receptor tyrosine kinases (erbB2 (HER2), erbB3 (HER3), and erbB4 (HER4)), functioning both as heterodimers and homodimers. The transmembrane forms of neuregulin 1 (NRG1) are present within synaptic vesicles, including those containing glutamate []. After exocytosis, NRG1 is in the presynaptic membrane, where the ectodomain of NRG1 may be cleaved off. The ectodomain then migrates across the synaptic cleft and binds to and activates a member of the EGF-receptor family on the postsynaptic membrane. This has been shown to increase the expression of certain glutamate-receptor subunits. NRG1 appears to signal for glutamate-receptor subunit expression, localisation, and /or phosphorylation facilitating subsequent glutamate transmission. The NRG1 gene has been identified as a potential gene determining susceptibility to schizophrenia by a combination of genetic linkage and association approaches []. ; GO: 0005102 receptor binding, 0009790 embryo development; PDB: 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=22.41 E-value=29 Score=31.37 Aligned_cols=15 Identities=7% Similarity=0.370 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHhh
Q 039997 287 VASCVTVMLGLLAIL 301 (333)
Q Consensus 287 ~~~~~~~~~~~~~~~ 301 (333)
+++++++++.+++++
T Consensus 14 gIcvaLlVVGi~Cvv 28 (404)
T PF02158_consen 14 GICVALLVVGIVCVV 28 (404)
T ss_dssp ---------------
T ss_pred hhhHHHHHHHHHHHH
Confidence 333333333344444
No 141
>TIGR00847 ccoS cytochrome oxidase maturation protein, cbb3-type. CcoS from Rhodobacter capsulatus has been shown essential for incorporation of redox-active prosthetic groups (heme, Cu) into cytochrome cbb(3) oxidase. FixS of Bradyrhizobium japonicum appears to have the same function. Members of this family are found so far in organisms with a cbb3-type cytochrome oxidase, including Neisseria meningitidis, Helicobacter pylori, Campylobacter jejuni, Caulobacter crescentus, Bradyrhizobium japonicum, and Rhodobacter capsulatus.
Probab=22.00 E-value=1.3e+02 Score=18.76 Aligned_cols=18 Identities=33% Similarity=0.512 Sum_probs=9.0
Q ss_pred hhHHHHHHHHHHHHhhhc
Q 039997 286 FVASCVTVMLGLLAILWV 303 (333)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~ 303 (333)
+.++++++++++++++|-
T Consensus 8 IpiSl~l~~~~l~~f~Wa 25 (51)
T TIGR00847 8 IPISLLLGGVGLVAFLWS 25 (51)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444555555555555553
No 142
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=21.45 E-value=1e+02 Score=24.17 Aligned_cols=12 Identities=0% Similarity=-0.042 Sum_probs=5.9
Q ss_pred ccccchhhHHHH
Q 039997 304 NPYWRKLWFYFI 315 (333)
Q Consensus 304 ~~~~~~~~~~~~ 315 (333)
.++.+++|-.++
T Consensus 25 l~kl~r~Y~~lm 36 (151)
T PF14584_consen 25 LRKLKRRYDALM 36 (151)
T ss_pred HHHHHHHHHHHh
Confidence 344445555554
No 143
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=21.17 E-value=1.3e+02 Score=17.63 Aligned_cols=31 Identities=23% Similarity=0.361 Sum_probs=14.7
Q ss_pred cccceeeccccccccccchhhcCCCCCCEEeCC
Q 039997 26 SNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLS 58 (333)
Q Consensus 26 ~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs 58 (333)
.++++|.+.++-=+.+.++.+- .+|++|.++
T Consensus 12 ~~l~~L~~g~~fn~~i~~~~lP--~sl~~L~fg 42 (44)
T PF05725_consen 12 SSLKSLIFGSSFNQPIEPGSLP--NSLKSLSFG 42 (44)
T ss_pred CCCeEEEECCccCccCCCCccC--CCceEEEee
Confidence 4677777744332223333322 445555544
No 144
>PF03597 CcoS: Cytochrome oxidase maturation protein cbb3-type; InterPro: IPR004714 Cytochrome cbb3 oxidases are found almost exclusively in Proteobacteria, and represent a distinctive class of proton-pumping respiratory haem-copper oxidases (HCO) that lack many of the key structural features that contribute to the reaction cycle of the intensely studied mitochondrial cytochrome c oxidase (CcO). Expression of cytochrome cbb3 oxidase allows human pathogens to colonise anoxic tissues and agronomically important diazotrophs to sustain nitrogen fixation []. Genes encoding a cytochrome cbb3 oxidase were initially designated fixNOQP (ccoNOQP), the ccoNOQP operon is always found close to a second gene cluster, known as fixGHIS (ccoGHIS) whose expression is necessary for the assembly of a functional cbb3 oxidase. On the basis of their derived amino acid sequences each of the four proteins encoded by the ccoGHIS operon are thought to be membrane-bound. It has been suggested that they may function in concert as a multi-subunit complex, possibly playing a role in the uptake and metabolism of copper required for the assembly of the binuclear centre of cytochrome cbb3 oxidase.
Probab=20.43 E-value=1.4e+02 Score=18.03 Aligned_cols=18 Identities=28% Similarity=0.540 Sum_probs=8.7
Q ss_pred hhHHHHHHHHHHHHhhhc
Q 039997 286 FVASCVTVMLGLLAILWV 303 (333)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~ 303 (333)
+.++++++++++.+++|-
T Consensus 7 ip~sl~l~~~~l~~f~Wa 24 (45)
T PF03597_consen 7 IPVSLILGLIALAAFLWA 24 (45)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444455555543
No 145
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=20.38 E-value=34 Score=30.01 Aligned_cols=37 Identities=19% Similarity=-0.042 Sum_probs=0.0
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHhhhcccccchhhHH
Q 039997 277 VDMVALYWSFVASCVTVMLGLLAILWVNPYWRKLWFY 313 (333)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (333)
.+...+..++..++++++++++++++++.++|+|--.
T Consensus 141 ~~d~yL~T~IpaVVI~~iLLIA~iIa~icyrrkR~GK 177 (290)
T PF05454_consen 141 FSDDYLHTFIPAVVIAAILLIAGIIACICYRRKRKGK 177 (290)
T ss_dssp -------------------------------------
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccc
Confidence 3445556655444555555555566666666555443
No 146
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=20.26 E-value=1.5e+02 Score=29.92 Aligned_cols=7 Identities=14% Similarity=0.477 Sum_probs=2.6
Q ss_pred cccccee
Q 039997 164 LRNIHGL 170 (333)
Q Consensus 164 l~~L~~L 170 (333)
++.+.-+
T Consensus 148 FP~l~G~ 154 (807)
T PF10577_consen 148 FPYLLGI 154 (807)
T ss_pred ccccccc
Confidence 3333333
Done!