Query 039997
Match_columns 333
No_of_seqs 225 out of 2681
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 06:01:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039997.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039997hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 3.2E-28 1.1E-32 240.5 19.5 119 140-259 631-750 (768)
2 3j0a_A TOLL-like receptor 5; m 100.0 2.7E-28 9.4E-33 243.3 17.1 126 140-269 450-600 (844)
3 1ogq_A PGIP-2, polygalacturona 100.0 3.8E-28 1.3E-32 215.2 12.1 229 2-257 76-312 (313)
4 3zyi_A Leucine-rich repeat-con 99.9 4.3E-27 1.5E-31 218.8 15.7 230 2-232 75-310 (452)
5 3m19_A Variable lymphocyte rec 99.9 8.4E-27 2.9E-31 200.0 15.8 211 3-263 15-235 (251)
6 3zyj_A Leucine-rich repeat-con 99.9 7E-27 2.4E-31 216.7 16.5 230 2-232 64-299 (440)
7 1ozn_A Reticulon 4 receptor; N 99.9 3.5E-27 1.2E-31 206.2 11.7 227 1-252 31-265 (285)
8 2o6q_A Variable lymphocyte rec 99.9 9.1E-26 3.1E-30 195.7 17.2 184 3-232 38-225 (270)
9 2ft3_A Biglycan; proteoglycan, 99.9 1.2E-25 4.2E-30 200.7 18.4 246 2-249 54-308 (332)
10 1xku_A Decorin; proteoglycan, 99.9 3.9E-25 1.3E-29 197.2 20.4 247 2-249 52-307 (330)
11 1p9a_G Platelet glycoprotein I 99.9 3.7E-25 1.3E-29 193.8 17.8 199 2-229 10-212 (290)
12 2id5_A Lingo-1, leucine rich r 99.9 1.1E-25 3.8E-30 210.7 12.9 252 2-253 80-361 (477)
13 2v9t_B SLIT homolog 2 protein 99.9 1.5E-25 5.2E-30 188.3 11.7 157 5-231 14-171 (220)
14 3v47_A TOLL-like receptor 5B a 99.9 9.9E-25 3.4E-29 202.9 17.9 113 140-252 298-412 (455)
15 2z62_A TOLL-like receptor 4, v 99.9 4.6E-25 1.6E-29 191.8 14.6 207 2-234 28-246 (276)
16 2z66_A Variable lymphocyte rec 99.9 2.9E-25 9.9E-30 195.9 12.6 226 2-231 28-267 (306)
17 3j0a_A TOLL-like receptor 5; m 99.9 3.5E-25 1.2E-29 220.9 13.0 254 2-261 290-600 (844)
18 2o6q_A Variable lymphocyte rec 99.9 9.7E-24 3.3E-28 182.9 19.5 200 3-251 17-221 (270)
19 2v70_A SLIT-2, SLIT homolog 2 99.9 4.8E-25 1.6E-29 185.3 9.9 163 5-237 14-178 (220)
20 3rfs_A Internalin B, repeat mo 99.9 4.3E-24 1.5E-28 185.3 15.9 182 2-233 41-226 (272)
21 3vq2_A TLR4, TOLL-like recepto 99.9 1.2E-24 4E-29 209.6 13.7 238 2-270 350-598 (606)
22 2id5_A Lingo-1, leucine rich r 99.9 1.5E-24 5E-29 203.1 13.4 249 2-250 56-335 (477)
23 3m19_A Variable lymphocyte rec 99.9 1.6E-23 5.6E-28 179.5 18.3 176 26-250 14-194 (251)
24 1p9a_G Platelet glycoprotein I 99.9 5.1E-24 1.8E-28 186.5 15.3 173 2-203 31-209 (290)
25 1ogq_A PGIP-2, polygalacturona 99.9 1.2E-24 4.1E-29 192.7 11.1 220 2-248 50-281 (313)
26 3o6n_A APL1; leucine-rich repe 99.9 9.9E-24 3.4E-28 192.4 16.3 85 2-86 69-156 (390)
27 3rgz_A Protein brassinosteroid 99.9 1.3E-23 4.6E-28 207.5 17.9 245 2-249 394-718 (768)
28 2z62_A TOLL-like receptor 4, v 99.9 2.6E-24 9.1E-29 187.0 11.0 178 2-206 52-241 (276)
29 3v47_A TOLL-like receptor 5B a 99.9 3.7E-24 1.3E-28 199.0 12.6 234 2-235 103-418 (455)
30 3o6n_A APL1; leucine-rich repe 99.9 7.6E-24 2.6E-28 193.2 14.0 245 2-250 93-354 (390)
31 4fcg_A Uncharacterized protein 99.9 4.6E-24 1.6E-28 190.1 11.5 205 2-248 81-290 (328)
32 2z80_A TOLL-like receptor 2, v 99.9 8.1E-24 2.8E-28 190.5 13.1 87 2-88 52-141 (353)
33 3oja_B Anopheles plasmodium-re 99.9 1.5E-23 5.3E-28 201.4 15.5 245 2-250 99-360 (597)
34 3e6j_A Variable lymphocyte rec 99.9 1.8E-23 6.2E-28 176.7 13.5 184 4-260 21-211 (229)
35 3t6q_A CD180 antigen; protein- 99.9 3.1E-24 1.1E-28 206.6 9.8 259 2-267 301-597 (606)
36 3rfs_A Internalin B, repeat mo 99.9 1.1E-22 3.6E-27 176.6 18.5 197 5-252 22-222 (272)
37 3oja_B Anopheles plasmodium-re 99.9 2.9E-23 9.9E-28 199.5 16.4 245 2-248 75-337 (597)
38 3oja_A Leucine-rich immune mol 99.9 5.1E-24 1.7E-28 199.7 10.4 215 2-250 34-252 (487)
39 1ziw_A TOLL-like receptor 3; i 99.9 1.9E-23 6.6E-28 203.8 14.7 251 2-270 405-664 (680)
40 2xwt_C Thyrotropin receptor; s 99.9 9.4E-24 3.2E-28 179.6 10.0 193 2-245 31-236 (239)
41 4fcg_A Uncharacterized protein 99.9 1.3E-22 4.3E-27 180.8 16.8 192 2-242 104-308 (328)
42 3o53_A Protein LRIM1, AGAP0063 99.9 9.5E-24 3.3E-28 187.2 9.3 215 2-227 34-252 (317)
43 1ozn_A Reticulon 4 receptor; N 99.9 8.8E-23 3E-27 178.2 15.3 220 5-252 14-242 (285)
44 3zyi_A Leucine-rich repeat-con 99.9 2.9E-22 9.9E-27 186.3 19.3 241 4-251 56-306 (452)
45 3zyj_A Leucine-rich repeat-con 99.9 2.7E-22 9.1E-27 185.9 18.8 256 4-266 45-327 (440)
46 2z80_A TOLL-like receptor 2, v 99.9 8.8E-24 3E-28 190.2 8.5 229 2-233 76-322 (353)
47 2xot_A Amphoterin-induced prot 99.9 1.4E-23 4.6E-28 189.6 8.9 177 5-230 21-207 (361)
48 1wwl_A Monocyte differentiatio 99.9 1E-23 3.4E-28 186.7 6.8 200 2-247 95-308 (312)
49 3vq2_A TLR4, TOLL-like recepto 99.9 5.8E-23 2E-27 197.8 11.0 227 2-252 328-562 (606)
50 1ziw_A TOLL-like receptor 3; i 99.9 2.6E-22 9E-27 195.7 15.6 228 2-252 381-626 (680)
51 2z66_A Variable lymphocyte rec 99.9 2.7E-22 9.1E-27 176.9 13.5 240 5-250 10-263 (306)
52 3t6q_A CD180 antigen; protein- 99.9 2.2E-21 7.4E-26 186.8 20.3 245 2-247 33-362 (606)
53 2o6s_A Variable lymphocyte rec 99.9 1.5E-21 5.1E-26 162.4 16.2 158 5-232 10-168 (208)
54 1wwl_A Monocyte differentiatio 99.9 3.5E-23 1.2E-27 183.2 6.0 177 2-226 121-310 (312)
55 2o6s_A Variable lymphocyte rec 99.9 3.4E-22 1.2E-26 166.3 11.6 156 2-230 28-183 (208)
56 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 3.5E-21 1.2E-25 183.8 19.7 106 140-246 352-461 (562)
57 4g8a_A TOLL-like receptor 4; l 99.9 2.1E-22 7.1E-27 194.4 11.2 216 2-268 397-618 (635)
58 2z63_A TOLL-like receptor 4, v 99.9 1.5E-22 5.2E-27 193.3 10.1 214 2-238 325-545 (570)
59 4glp_A Monocyte differentiatio 99.9 1.7E-22 6E-27 178.5 9.7 200 2-246 91-305 (310)
60 4g8a_A TOLL-like receptor 4; l 99.9 2.9E-22 1E-26 193.4 11.4 160 1-227 51-216 (635)
61 4eco_A Uncharacterized protein 99.9 2E-21 6.7E-26 188.0 15.5 242 2-247 305-578 (636)
62 4eco_A Uncharacterized protein 99.9 1.6E-21 5.3E-26 188.7 14.5 82 2-84 249-343 (636)
63 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 7.7E-22 2.6E-26 188.3 12.2 117 140-259 427-546 (562)
64 2z7x_B TOLL-like receptor 1, v 99.9 3.3E-21 1.1E-25 182.2 16.3 107 140-247 323-433 (520)
65 2xot_A Amphoterin-induced prot 99.9 8.3E-22 2.8E-26 177.9 10.8 174 28-250 20-204 (361)
66 1h6u_A Internalin H; cell adhe 99.9 2E-21 6.8E-26 171.5 13.0 189 2-227 41-232 (308)
67 4glp_A Monocyte differentiatio 99.9 4.7E-22 1.6E-26 175.7 8.9 178 2-226 117-308 (310)
68 1xku_A Decorin; proteoglycan, 99.9 1.7E-20 5.9E-25 167.1 19.1 236 3-248 32-276 (330)
69 2ft3_A Biglycan; proteoglycan, 99.9 1.5E-20 5E-25 167.7 17.9 237 3-249 34-278 (332)
70 2v9t_B SLIT homolog 2 protein 99.9 4E-21 1.4E-25 161.3 12.4 136 2-204 32-167 (220)
71 3oja_A Leucine-rich immune mol 99.9 3.7E-22 1.2E-26 187.1 6.7 192 2-228 58-253 (487)
72 2z7x_B TOLL-like receptor 1, v 99.9 1.5E-21 5.1E-26 184.6 10.8 181 2-233 302-489 (520)
73 3o53_A Protein LRIM1, AGAP0063 99.8 6.6E-22 2.2E-26 175.4 7.4 236 3-249 11-251 (317)
74 1h6u_A Internalin H; cell adhe 99.8 8.7E-21 3E-25 167.4 14.2 170 2-206 63-234 (308)
75 1w8a_A SLIT protein; signaling 99.8 1.6E-21 5.5E-26 160.2 8.8 113 141-253 54-167 (192)
76 4ecn_A Leucine-rich repeat pro 99.8 2E-20 6.8E-25 185.2 17.6 240 2-247 548-818 (876)
77 1w8a_A SLIT protein; signaling 99.8 2.6E-21 8.9E-26 158.9 9.4 179 5-257 11-192 (192)
78 2z81_A CD282 antigen, TOLL-lik 99.8 1.6E-21 5.5E-26 185.5 8.7 200 2-227 26-238 (549)
79 4ecn_A Leucine-rich repeat pro 99.8 8.4E-20 2.9E-24 180.7 20.7 238 2-245 515-786 (876)
80 4fmz_A Internalin; leucine ric 99.8 4.7E-20 1.6E-24 165.3 17.2 233 2-248 88-324 (347)
81 2v70_A SLIT-2, SLIT homolog 2 99.8 1.1E-20 3.8E-25 158.5 12.2 138 2-206 32-170 (220)
82 2z81_A CD282 antigen, TOLL-lik 99.8 5.3E-21 1.8E-25 181.9 11.2 201 2-235 310-520 (549)
83 2xwt_C Thyrotropin receptor; s 99.8 9.2E-21 3.2E-25 161.1 11.1 172 2-223 55-237 (239)
84 2z63_A TOLL-like receptor 4, v 99.8 7.7E-21 2.6E-25 181.5 11.4 176 2-224 28-212 (570)
85 1h6t_A Internalin B; cell adhe 99.8 3.3E-20 1.1E-24 162.3 14.1 168 2-227 46-215 (291)
86 3e6j_A Variable lymphocyte rec 99.8 3.8E-20 1.3E-24 156.2 13.7 136 2-205 40-175 (229)
87 2wfh_A SLIT homolog 2 protein 99.8 1.1E-20 3.7E-25 155.3 9.4 120 141-268 54-174 (193)
88 3bz5_A Internalin-J, INLJ; leu 99.8 3E-19 1E-23 165.9 20.3 207 2-228 42-249 (457)
89 4ezg_A Putative uncharacterize 99.8 2.4E-20 8.3E-25 153.7 11.0 150 2-225 44-194 (197)
90 1o6v_A Internalin A; bacterial 99.8 1.8E-19 6.1E-24 168.1 16.8 81 2-86 68-149 (466)
91 4fmz_A Internalin; leucine ric 99.8 1.8E-19 6.1E-24 161.5 15.3 212 2-247 132-345 (347)
92 1o6v_A Internalin A; bacterial 99.8 1.3E-19 4.6E-24 168.9 14.7 210 2-249 177-389 (466)
93 3bz5_A Internalin-J, INLJ; leu 99.8 8.8E-19 3E-23 162.8 19.7 225 2-245 64-296 (457)
94 1m9s_A Internalin B; cell inva 99.8 2.2E-19 7.4E-24 171.9 14.7 168 2-227 43-212 (605)
95 1xeu_A Internalin C; cellular 99.8 4E-19 1.4E-23 153.1 14.4 167 4-228 21-188 (263)
96 2ell_A Acidic leucine-rich nuc 99.8 2.7E-19 9.3E-24 143.5 11.0 136 2-206 24-164 (168)
97 3cvr_A Invasion plasmid antige 99.8 8.6E-19 3E-23 166.2 14.9 180 3-229 60-247 (571)
98 3g06_A SSPH2 (leucine-rich rep 99.8 4.9E-18 1.7E-22 162.8 19.5 79 141-227 221-299 (622)
99 1jl5_A Outer protein YOPM; leu 99.8 6.9E-19 2.4E-23 163.3 11.2 221 2-246 11-248 (454)
100 3cvr_A Invasion plasmid antige 99.8 9.1E-19 3.1E-23 166.0 12.2 165 2-210 80-252 (571)
101 4ay9_X Follicle-stimulating ho 99.8 2.3E-18 8E-23 154.6 13.3 180 2-206 30-219 (350)
102 2je0_A Acidic leucine-rich nuc 99.8 8.3E-19 2.8E-23 137.8 9.0 128 2-198 17-149 (149)
103 3g06_A SSPH2 (leucine-rich rep 99.8 1E-17 3.6E-22 160.5 17.7 218 2-249 81-298 (622)
104 1jl5_A Outer protein YOPM; leu 99.8 2E-17 6.9E-22 153.5 19.1 77 2-85 131-209 (454)
105 2wfh_A SLIT homolog 2 protein 99.8 4.9E-18 1.7E-22 139.4 12.9 129 5-204 13-141 (193)
106 1xeu_A Internalin C; cellular 99.8 7.7E-19 2.6E-23 151.3 7.2 169 24-250 17-187 (263)
107 2o6r_A Variable lymphocyte rec 99.7 8.7E-18 3E-22 135.9 12.0 92 141-232 52-144 (177)
108 2o6r_A Variable lymphocyte rec 99.7 1.7E-17 5.9E-22 134.1 13.4 133 4-206 9-141 (177)
109 4ay9_X Follicle-stimulating ho 99.7 2.2E-17 7.6E-22 148.2 14.8 196 5-229 12-219 (350)
110 1h6t_A Internalin B; cell adhe 99.7 3.1E-18 1.1E-22 149.8 8.8 185 7-249 29-214 (291)
111 1dce_A Protein (RAB geranylger 99.7 3.2E-20 1.1E-24 176.5 -4.8 89 140-231 462-552 (567)
112 3goz_A Leucine-rich repeat-con 99.7 1.1E-18 3.6E-23 157.6 5.2 231 2-247 22-296 (362)
113 1m9s_A Internalin B; cell inva 99.7 6.3E-18 2.2E-22 161.7 10.4 186 4-247 23-209 (605)
114 3goz_A Leucine-rich repeat-con 99.7 3.5E-19 1.2E-23 160.7 1.4 221 6-246 2-264 (362)
115 4ezg_A Putative uncharacterize 99.7 1.3E-17 4.3E-22 137.4 10.6 153 21-246 39-192 (197)
116 2ca6_A RAN GTPase-activating p 99.7 5.4E-19 1.8E-23 160.8 1.3 212 2-229 60-320 (386)
117 2ell_A Acidic leucine-rich nuc 99.7 8.1E-18 2.8E-22 134.9 8.0 135 25-228 23-163 (168)
118 2ca6_A RAN GTPase-activating p 99.7 4.5E-19 1.5E-23 161.3 0.5 237 1-249 31-317 (386)
119 3g39_A Variable lymphocyte rec 99.7 1.2E-17 4.1E-22 134.2 7.9 120 141-260 30-151 (170)
120 2ast_B S-phase kinase-associat 99.7 3.7E-18 1.3E-22 152.1 3.9 195 2-222 70-282 (336)
121 2ast_B S-phase kinase-associat 99.7 3.3E-18 1.1E-22 152.5 3.5 215 3-245 48-282 (336)
122 2je0_A Acidic leucine-rich nuc 99.7 2.5E-17 8.7E-22 129.2 6.5 128 25-221 16-149 (149)
123 1a9n_A U2A', U2A'; complex (nu 99.7 7.3E-17 2.5E-21 130.3 8.7 136 21-226 14-154 (176)
124 2r9u_A Variable lymphocyte rec 99.7 1.5E-16 5.2E-21 128.2 9.0 120 141-260 33-157 (174)
125 4b8c_D Glucose-repressible alc 99.7 1.3E-17 4.6E-22 163.1 2.1 150 18-222 216-369 (727)
126 1ds9_A Outer arm dynein; leuci 99.7 1E-18 3.5E-23 144.1 -5.2 62 141-204 93-155 (198)
127 1a9n_A U2A', U2A'; complex (nu 99.7 1.2E-16 4.3E-21 129.0 7.2 131 2-203 19-154 (176)
128 4b8c_D Glucose-repressible alc 99.6 2.8E-16 9.4E-21 153.8 8.6 178 2-231 173-360 (727)
129 3sb4_A Hypothetical leucine ri 99.6 4.6E-16 1.6E-20 138.4 9.1 223 2-228 49-313 (329)
130 3g39_A Variable lymphocyte rec 99.6 3.2E-15 1.1E-19 120.0 10.9 61 4-67 11-71 (170)
131 1z7x_W Ribonuclease inhibitor; 99.6 1.6E-17 5.6E-22 154.4 -3.3 221 2-225 28-297 (461)
132 1dce_A Protein (RAB geranylger 99.6 3.5E-15 1.2E-19 141.9 11.8 121 27-219 442-567 (567)
133 1z7x_W Ribonuclease inhibitor; 99.6 6.7E-17 2.3E-21 150.2 -0.2 204 2-226 170-412 (461)
134 2r9u_A Variable lymphocyte rec 99.6 7.3E-15 2.5E-19 118.3 10.9 57 5-64 15-71 (174)
135 1ds9_A Outer arm dynein; leuci 99.5 8.7E-17 3E-21 132.5 -4.3 137 22-230 14-158 (198)
136 2ifg_A High affinity nerve gro 99.5 2E-14 6.7E-19 128.7 8.6 91 140-231 30-122 (347)
137 2ifg_A High affinity nerve gro 99.5 3.7E-14 1.3E-18 126.9 6.9 105 6-180 12-118 (347)
138 3sb4_A Hypothetical leucine ri 99.4 2.5E-13 8.4E-18 120.7 9.5 201 2-219 101-328 (329)
139 3un9_A NLR family member X1; l 99.4 2.4E-15 8.4E-20 135.7 -4.7 163 2-226 72-253 (372)
140 3un9_A NLR family member X1; l 99.3 5.5E-13 1.9E-17 120.3 0.5 161 2-225 101-283 (372)
141 4fdw_A Leucine rich hypothetic 99.2 1.4E-10 4.7E-15 105.6 13.5 66 2-70 135-200 (401)
142 3ogk_B Coronatine-insensitive 99.2 1.7E-12 5.8E-17 124.2 -0.3 85 140-225 292-391 (592)
143 3ogk_B Coronatine-insensitive 99.1 1.6E-11 5.6E-16 117.4 3.3 60 2-61 73-149 (592)
144 4fdw_A Leucine rich hypothetic 99.1 8.9E-10 3E-14 100.2 14.3 79 142-222 249-333 (401)
145 2p1m_B Transport inhibitor res 99.1 9.6E-12 3.3E-16 119.0 0.1 56 163-219 287-345 (594)
146 2p1m_B Transport inhibitor res 98.9 7.4E-11 2.5E-15 112.8 -0.5 179 2-225 314-519 (594)
147 2ra8_A Uncharacterized protein 98.7 4.1E-09 1.4E-13 94.4 3.7 63 163-225 250-320 (362)
148 1io0_A Tropomodulin; LRR prote 98.6 8.2E-09 2.8E-13 83.5 2.5 61 141-201 93-163 (185)
149 3rw6_A Nuclear RNA export fact 98.6 1.8E-08 6.3E-13 85.8 3.7 61 141-203 170-234 (267)
150 4fs7_A Uncharacterized protein 98.6 8.6E-07 2.9E-11 80.3 13.6 80 140-222 296-376 (394)
151 2ra8_A Uncharacterized protein 98.6 5.9E-08 2E-12 86.8 5.7 179 2-223 139-341 (362)
152 1io0_A Tropomodulin; LRR prote 98.5 8.4E-09 2.9E-13 83.4 -0.5 114 2-178 36-164 (185)
153 3rw6_A Nuclear RNA export fact 98.5 1.5E-07 5.1E-12 80.2 5.4 78 2-80 170-257 (267)
154 3rfe_A Platelet glycoprotein I 98.3 2.3E-07 8E-12 70.2 3.1 89 169-266 12-103 (130)
155 4fs7_A Uncharacterized protein 98.1 7.7E-06 2.6E-10 74.0 8.3 75 140-217 319-393 (394)
156 4gt6_A Cell surface protein; l 98.1 1.5E-05 5E-10 72.2 9.8 57 141-199 311-367 (394)
157 4h09_A Hypothetical leucine ri 98.0 1.5E-05 5.1E-10 71.6 9.4 133 17-220 208-341 (379)
158 4gt6_A Cell surface protein; l 98.0 3.3E-05 1.1E-09 69.8 11.0 82 140-224 287-369 (394)
159 3e4g_A ATP synthase subunit S, 98.0 1.5E-06 5.3E-11 68.8 1.7 97 19-178 54-153 (176)
160 3e4g_A ATP synthase subunit S, 98.0 1.1E-06 3.8E-11 69.7 0.8 83 141-223 61-150 (176)
161 4h09_A Hypothetical leucine ri 97.9 3.7E-05 1.3E-09 69.0 9.9 80 141-222 240-320 (379)
162 3rfe_A Platelet glycoprotein I 97.8 3.7E-05 1.3E-09 57.9 6.2 57 5-63 11-68 (130)
163 1pgv_A TMD-1, tropomodulin TMD 97.4 5.4E-05 1.8E-09 61.1 2.3 38 26-63 41-83 (197)
164 1pgv_A TMD-1, tropomodulin TMD 97.3 3.8E-05 1.3E-09 62.0 0.5 63 1-63 40-111 (197)
165 2ks1_B Epidermal growth factor 89.2 0.24 8.3E-06 28.8 2.3 17 283-299 14-30 (44)
166 2l2t_A Receptor tyrosine-prote 87.8 0.53 1.8E-05 27.3 3.0 18 282-299 12-29 (44)
167 2jwa_A Receptor tyrosine-prote 80.0 1.9 6.4E-05 25.0 3.1 6 300-305 32-37 (44)
168 2lz0_A Uncharacterized protein 79.3 2.4 8.4E-05 29.5 4.2 50 11-61 5-54 (100)
169 2k9y_A Ephrin type-A receptor 73.7 3.3 0.00011 23.4 3.0 10 283-292 16-25 (41)
170 2k1k_A Ephrin type-A receptor 68.7 4.5 0.00015 22.6 2.7 10 284-293 14-23 (38)
171 2l9u_A Receptor tyrosine-prote 67.5 4.4 0.00015 21.8 2.3 23 284-306 10-32 (40)
172 2lz0_A Uncharacterized protein 66.8 13 0.00043 25.8 5.4 49 150-199 5-53 (100)
173 2lx0_A Membrane fusion protein 48.7 9.9 0.00034 19.1 1.6 20 284-303 6-25 (32)
174 2l34_A TYRO protein tyrosine k 41.8 28 0.00096 18.6 2.8 21 283-303 9-29 (33)
175 3arc_X Photosystem II PSBX pro 24.2 89 0.0031 17.4 3.0 21 280-300 7-27 (39)
176 2llm_A Amyloid beta A4 protein 26.5 20 0.0007 20.4 0.0 17 288-304 25-41 (43)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.96 E-value=3.2e-28 Score=240.51 Aligned_cols=119 Identities=44% Similarity=0.679 Sum_probs=113.4
Q ss_pred hccccEEECCCCcccccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEE
Q 039997 140 LEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFD 218 (333)
Q Consensus 140 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~ 218 (333)
+.+|+.|||++|++++..|..++++++|+.|+|++|++++.+|..++.+++|+.|||++|++++..| .+..++.|+.|+
T Consensus 631 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ 710 (768)
T 3rgz_A 631 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID 710 (768)
T ss_dssp SBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEE
T ss_pred cccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEE
Confidence 5779999999999999999999999999999999999999999999999999999999999999998 999999999999
Q ss_pred cccCcCcccCCCCccccccCccccCCCCCCCCCCCCCCCCC
Q 039997 219 VSYNNLSCPIPDKEQFSTFDESSYRGNLNLCCPPINKSCTN 259 (333)
Q Consensus 219 l~~N~l~~~~~~~~~~~~l~~~~~~~n~~~c~~~~~~~c~~ 259 (333)
+++|+++|.+|....+..+...++.||+.+|+.|.. .|..
T Consensus 711 ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~ 750 (768)
T 3rgz_A 711 LSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDP 750 (768)
T ss_dssp CCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCS
T ss_pred CcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc-CCCC
Confidence 999999999999999999999999999999999876 8864
No 2
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.96 E-value=2.7e-28 Score=243.29 Aligned_cols=126 Identities=27% Similarity=0.348 Sum_probs=88.8
Q ss_pred hccccEEECCCCccc-----ccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCC
Q 039997 140 LEYMAGLDLSSNELT-----GDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHS 213 (333)
Q Consensus 140 l~~L~~L~Ls~n~l~-----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~ 213 (333)
+++|+.|++++|.++ +..+..|.++++|+.|+|++|++++.++..|..+++|+.|+|++|+++++++ .+. ++
T Consensus 450 ~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~ 527 (844)
T 3j0a_A 450 NPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--AN 527 (844)
T ss_dssp CTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SC
T ss_pred CCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--cc
Confidence 455666666666665 3334567778888888888888888777778888888888888888887776 443 67
Q ss_pred CCEEEcccCcCcccCCCCccccccCccccCCCCCCC-------------------CCCCCCCCCCCCCcCCCCCC
Q 039997 214 LSKFDVSYNNLSCPIPDKEQFSTFDESSYRGNLNLC-------------------CPPINKSCTNLPELLETSSK 269 (333)
Q Consensus 214 L~~L~l~~N~l~~~~~~~~~~~~l~~~~~~~n~~~c-------------------~~~~~~~c~~~~~~~~~~~~ 269 (333)
|+.|++++|.+++..|. .+..+..+++.+|++.| +.+....|..|+...+....
T Consensus 528 L~~L~Ls~N~l~~~~~~--~~~~L~~l~l~~Np~~C~c~~~~f~~~~~~~~~~~~~~~~~~~C~~p~~~~g~~l~ 600 (844)
T 3j0a_A 528 LEILDISRNQLLAPNPD--VFVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLF 600 (844)
T ss_dssp CCEEEEEEECCCCCCSC--CCSSCCEEEEEEECCCCSSSCCSHHHHHHHTTTTTCCCGGGCCCSSCSSSCSCCTT
T ss_pred ccEEECCCCcCCCCChh--HhCCcCEEEecCCCcccccccHHHHHHHHhcCcccccccccCccCCchhhCCCccc
Confidence 77777777777766554 34566666777777777 44566789988777665443
No 3
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.95 E-value=3.8e-28 Score=215.22 Aligned_cols=229 Identities=30% Similarity=0.463 Sum_probs=183.0
Q ss_pred CcccEEECCC-CcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhc---ccccc
Q 039997 2 SALEILDLRD-NYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITN---LLFWK 77 (333)
Q Consensus 2 ~~L~~L~Ls~-N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~---L~~L~ 77 (333)
++|++|+|++ |.+++.+|..|.++++|++|++++|++++..|..|..+++|++|++++|.+++.+|..+.. |+.|+
T Consensus 76 ~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 155 (313)
T 1ogq_A 76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT 155 (313)
T ss_dssp TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEE
Confidence 5799999995 9999899999999999999999999999899999999999999999999999888887755 55666
Q ss_pred ccCCccccc-cccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccc-cchhhh-hccccEEECCCCccc
Q 039997 78 VGNGDLYGL-VERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYE-SYKGVI-LEYMAGLDLSSNELT 154 (333)
Q Consensus 78 ~~~n~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-l~~L~~L~Ls~n~l~ 154 (333)
+.+|.+.+. +....... ... ....+..+.+. ..+... ...|+.|++++|.++
T Consensus 156 L~~N~l~~~~p~~l~~l~--------~~L-----------------~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~ 210 (313)
T 1ogq_A 156 FDGNRISGAIPDSYGSFS--------KLF-----------------TSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLE 210 (313)
T ss_dssp CCSSCCEEECCGGGGCCC--------TTC-----------------CEEECCSSEEEEECCGGGGGCCCSEEECCSSEEE
T ss_pred CcCCcccCcCCHHHhhhh--------hcC-----------------cEEECcCCeeeccCChHHhCCcccEEECcCCccc
Confidence 777776632 11111000 001 11111111111 111100 123999999999999
Q ss_pred ccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEcccCcCcccCCCCcc
Q 039997 155 GDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPIPDKEQ 233 (333)
Q Consensus 155 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~ 233 (333)
+..|..|..+++|+.|++++|.+++..+. +..+++|+.|++++|.+++..| .+..+++|+.|++++|++++..|....
T Consensus 211 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~ 289 (313)
T 1ogq_A 211 GDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGN 289 (313)
T ss_dssp ECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTT
T ss_pred CcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCcc
Confidence 99999999999999999999999976665 8889999999999999998777 899999999999999999999998888
Q ss_pred ccccCccccCCCCCCCCCCCCCCC
Q 039997 234 FSTFDESSYRGNLNLCCPPINKSC 257 (333)
Q Consensus 234 ~~~l~~~~~~~n~~~c~~~~~~~c 257 (333)
+..++.+++.+|+..|+.|.. .|
T Consensus 290 l~~L~~l~l~~N~~lc~~p~~-~C 312 (313)
T 1ogq_A 290 LQRFDVSAYANNKCLCGSPLP-AC 312 (313)
T ss_dssp GGGSCGGGTCSSSEEESTTSS-CC
T ss_pred ccccChHHhcCCCCccCCCCC-CC
Confidence 889999999999999987754 46
No 4
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=4.3e-27 Score=218.83 Aligned_cols=230 Identities=15% Similarity=0.079 Sum_probs=171.9
Q ss_pred CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhh---hccccccc
Q 039997 2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCI---TNLLFWKV 78 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l---~~L~~L~~ 78 (333)
+++++|+|++|.|++..+..|.++++|++|+|++|+|+++.+..|.++++|++|+|++|+++...+..| .+|+.|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 579999999999998889999999999999999999999999999999999999999999996555544 56778888
Q ss_pred cCCccccccccCCCCcccccccccCCCC-CcCCCCCCCCccccceEEEEeeccccccchhh-hhccccEEECCCCccccc
Q 039997 79 GNGDLYGLVERGRDFDLEDIYNYYNSTV-PLSLDRSDTRTLDTQVVVNFMTKNRYESYKGV-ILEYMAGLDLSSNELTGD 156 (333)
Q Consensus 79 ~~n~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~Ls~n~l~~~ 156 (333)
++|.+..+.................... ...+....+..+. .+....+..+.+..++.. .+++|+.|+|++|.+++.
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~ 233 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLF-NLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEI 233 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCT-TCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEE
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCC-CCCEEECCCCcccccccccccccccEEECcCCcCccc
Confidence 8888776543211111111011111100 0011111111111 122233334444333322 167899999999999999
Q ss_pred CCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEcccCcCcccCCCCc
Q 039997 157 ISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPIPDKE 232 (333)
Q Consensus 157 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~ 232 (333)
.|..|.++++|+.|+|++|++++..+..|..+++|+.|+|++|+++++++ .+..+++|+.|++++|++.|.|...+
T Consensus 234 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~~~ 310 (452)
T 3zyi_A 234 RPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDILW 310 (452)
T ss_dssp CGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTTHH
T ss_pred CcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCchH
Confidence 99999999999999999999998888899999999999999999998888 78889999999999999999996543
No 5
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.94 E-value=8.4e-27 Score=200.03 Aligned_cols=211 Identities=22% Similarity=0.249 Sum_probs=159.1
Q ss_pred cccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhh---hcccccccc
Q 039997 3 ALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCI---TNLLFWKVG 79 (333)
Q Consensus 3 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l---~~L~~L~~~ 79 (333)
+.+++|++++.++ .+|..+. +++++|+|++|+++++.+..|.++++|++|++++|.+++..+..| .+|+.|++.
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 4678888888888 5666655 578888888888888888888888888888888888886666554 445566666
Q ss_pred CCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCc
Q 039997 80 NGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISS 159 (333)
Q Consensus 80 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 159 (333)
+|.+..+..... . .+++|++|+|++|++++..+.
T Consensus 92 ~n~l~~~~~~~~--------------------------------------------~--~l~~L~~L~L~~N~l~~~~~~ 125 (251)
T 3m19_A 92 NNQLASLPLGVF--------------------------------------------D--HLTQLDKLYLGGNQLKSLPSG 125 (251)
T ss_dssp TSCCCCCCTTTT--------------------------------------------T--TCTTCCEEECCSSCCCCCCTT
T ss_pred CCcccccChhHh--------------------------------------------c--ccCCCCEEEcCCCcCCCcChh
Confidence 666554221100 0 057899999999999988888
Q ss_pred cccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEcccCcCcccCCCCccccc-c
Q 039997 160 EIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPIPDKEQFST-F 237 (333)
Q Consensus 160 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-l 237 (333)
.|..+++|+.|+|++|++++..+..|+.+++|+.|++++|+++++.+ .+..+++|+.|++++|+++|.+.....+.. +
T Consensus 126 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~l~~~~ 205 (251)
T 3m19_A 126 VFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEILYLSQWI 205 (251)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTSTTHHHHHHHH
T ss_pred HhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCccccHHHHHHH
Confidence 89999999999999999998888889999999999999999999888 899999999999999999998544433322 2
Q ss_pred Cc-----cccCCCCCCCCCCCCCCCCCCCCc
Q 039997 238 DE-----SSYRGNLNLCCPPINKSCTNLPEL 263 (333)
Q Consensus 238 ~~-----~~~~~n~~~c~~~~~~~c~~~~~~ 263 (333)
.. ....++ ..|+.|....|..+...
T Consensus 206 ~~~~~~~~~~~~~-~~~~~~~~~~C~~~~~~ 235 (251)
T 3m19_A 206 RENSNKVKDGTGQ-NLHESPDGVTCSDGKVV 235 (251)
T ss_dssp HHSGGGBCC--------CCGGGCBBTTSCBG
T ss_pred HhcccceeeccCc-ccccCCCcCccCCCcEE
Confidence 11 111233 35777888889865433
No 6
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=7e-27 Score=216.67 Aligned_cols=230 Identities=17% Similarity=0.123 Sum_probs=172.0
Q ss_pred CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhh---hccccccc
Q 039997 2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCI---TNLLFWKV 78 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l---~~L~~L~~ 78 (333)
++++.|+|++|.|++..+..|.++++|++|+|++|+|+.+.++.|.++++|++|+|++|+++...+..| .+|+.|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 578999999999998888999999999999999999999999999999999999999999996555444 56677888
Q ss_pred cCCccccccccCCCCcccccccccCCCC-CcCCCCCCCCccccceEEEEeeccccccchhhh-hccccEEECCCCccccc
Q 039997 79 GNGDLYGLVERGRDFDLEDIYNYYNSTV-PLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVI-LEYMAGLDLSSNELTGD 156 (333)
Q Consensus 79 ~~n~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~L~~L~Ls~n~l~~~ 156 (333)
.+|.+..+.................... ...+....+..+. .+....+..+.+..++... +.+|+.|+|++|++++.
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~ 222 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLS-NLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAI 222 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCS-SCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEE
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhccc-ccCeecCCCCcCccccccCCCcccCEEECCCCccCcc
Confidence 8888776543211111111001111100 0011111111111 1222333444444433221 67899999999999999
Q ss_pred CCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEcccCcCcccCCCCc
Q 039997 157 ISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPIPDKE 232 (333)
Q Consensus 157 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~ 232 (333)
.+..|.++++|+.|+|++|++++..+..|..+++|+.|+|++|+++.+++ .+..+++|+.|++++|+|.|+|...+
T Consensus 223 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l~~ 299 (440)
T 3zyj_A 223 RPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDILW 299 (440)
T ss_dssp CTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTTHH
T ss_pred ChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCchH
Confidence 99999999999999999999998888899999999999999999998888 78899999999999999999996543
No 7
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=3.5e-27 Score=206.18 Aligned_cols=227 Identities=19% Similarity=0.175 Sum_probs=168.4
Q ss_pred CCcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCc-CCCCCChhh---hccccc
Q 039997 1 DSALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNR-LNGSIPSCI---TNLLFW 76 (333)
Q Consensus 1 ~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~-l~~~~p~~l---~~L~~L 76 (333)
+++|++|++++|.|++..+..|.++++|++|++++|+++++.|..|.++++|++|++++|+ ++...|..+ .+|+.|
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 3578999999999998777889999999999999999998889999999999999999997 775556655 456677
Q ss_pred cccCCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhh---hhccccEEECCCCcc
Q 039997 77 KVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGV---ILEYMAGLDLSSNEL 153 (333)
Q Consensus 77 ~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~L~~L~Ls~n~l 153 (333)
++.+|.+..+....... ..... ...+..+.+...+.. .+++|+.|++++|++
T Consensus 111 ~l~~n~l~~~~~~~~~~--------l~~L~-----------------~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 165 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRG--------LAALQ-----------------YLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI 165 (285)
T ss_dssp ECTTSCCCCCCTTTTTT--------CTTCC-----------------EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred ECCCCcCCEECHhHhhC--------CcCCC-----------------EEECCCCcccccCHhHhccCCCccEEECCCCcc
Confidence 77777766542211000 00111 111111222221111 157889999999999
Q ss_pred cccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEcccCcCcccCCCCc
Q 039997 154 TGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPIPDKE 232 (333)
Q Consensus 154 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~ 232 (333)
++..+..|..+++|+.|++++|.+++..|..|..+++|+.|++++|.+++..+ .+..+++|+.|++++|++.|.|+..+
T Consensus 166 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~ 245 (285)
T 1ozn_A 166 SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARP 245 (285)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHH
T ss_pred cccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHH
Confidence 98887888899999999999999988878888899999999999999998777 68888999999999999999887665
Q ss_pred cccccCccccCCCCCCCCCC
Q 039997 233 QFSTFDESSYRGNLNLCCPP 252 (333)
Q Consensus 233 ~~~~l~~~~~~~n~~~c~~~ 252 (333)
...+++......+...|..|
T Consensus 246 ~~~~l~~~~~~~~~~~c~~p 265 (285)
T 1ozn_A 246 LWAWLQKFRGSSSEVPCSLP 265 (285)
T ss_dssp HHHHHHHCCSEECCCBEEES
T ss_pred HHHHHHhcccccCccccCCc
Confidence 55566555555555444433
No 8
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.94 E-value=9.1e-26 Score=195.70 Aligned_cols=184 Identities=23% Similarity=0.271 Sum_probs=130.3
Q ss_pred cccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhh---hcccccccc
Q 039997 3 ALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCI---TNLLFWKVG 79 (333)
Q Consensus 3 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l---~~L~~L~~~ 79 (333)
++++|+|++|.|++..+..|.++++|++|++++|+++.+.+..|.++++|++|++++|+++...+..| .+|+.|++.
T Consensus 38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 117 (270)
T 2o6q_A 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD 117 (270)
T ss_dssp TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECC
T ss_pred CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECC
Confidence 45666666666665545556666666666666666665555555666666666666666654333333 234444444
Q ss_pred CCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCc
Q 039997 80 NGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISS 159 (333)
Q Consensus 80 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 159 (333)
+|.+..+... .+. .+++|++|++++|.+++..+.
T Consensus 118 ~n~l~~~~~~--------------------------------------------~~~--~l~~L~~L~Ls~n~l~~~~~~ 151 (270)
T 2o6q_A 118 RNQLKSLPPR--------------------------------------------VFD--SLTKLTYLSLGYNELQSLPKG 151 (270)
T ss_dssp SSCCCCCCTT--------------------------------------------TTT--TCTTCCEEECCSSCCCCCCTT
T ss_pred CCccCeeCHH--------------------------------------------HhC--cCcCCCEEECCCCcCCccCHh
Confidence 4444332110 000 157899999999999988888
Q ss_pred cccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEcccCcCcccCCCCc
Q 039997 160 EIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPIPDKE 232 (333)
Q Consensus 160 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~ 232 (333)
.|..+++|+.|++++|++++..+..|..+++|+.|++++|.++++++ .+..+++|+.|++++|++.|.|+...
T Consensus 152 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~ 225 (270)
T 2o6q_A 152 VFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGII 225 (270)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSSSH
T ss_pred HccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCccHH
Confidence 89999999999999999998888889999999999999999998887 78889999999999999999997553
No 9
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.94 E-value=1.2e-25 Score=200.66 Aligned_cols=246 Identities=18% Similarity=0.136 Sum_probs=181.6
Q ss_pred CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhccccccccCC
Q 039997 2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGNG 81 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~~L~~~~n 81 (333)
++|++|++++|.|++..|..|.++++|++|++++|+++++.|..|.++++|++|++++|+++...+..+.+|+.|++.+|
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~L~~L~l~~n 133 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDN 133 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCCTTCCEEECCSS
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCccccccCCEEECCCC
Confidence 57899999999999877889999999999999999999888999999999999999999998444444578899999999
Q ss_pred ccccccccC--CCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCc
Q 039997 82 DLYGLVERG--RDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISS 159 (333)
Q Consensus 82 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 159 (333)
.+..+.... ....+.......+...........+... ......+..+.+..++....++|+.|++++|.+++..+.
T Consensus 134 ~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l--~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~ 211 (332)
T 2ft3_A 134 RIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL--KLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELE 211 (332)
T ss_dssp CCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC--CCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTT
T ss_pred ccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC--ccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHH
Confidence 887654321 1111111111111111000111111111 112222334444445544457899999999999988889
Q ss_pred cccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEEEcccCcCcccCCCCc-------
Q 039997 160 EIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCPIPDKE------- 232 (333)
Q Consensus 160 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~------- 232 (333)
.|.++++|+.|++++|++++..+..+..+++|+.|++++|.++.++..+..+++|+.|++++|+++...+...
T Consensus 212 ~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~ 291 (332)
T 2ft3_A 212 DLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGV 291 (332)
T ss_dssp SSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCS
T ss_pred HhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHcccccccc
Confidence 9999999999999999999888888999999999999999999766688999999999999999986654321
Q ss_pred cccccCccccCCCCCCC
Q 039997 233 QFSTFDESSYRGNLNLC 249 (333)
Q Consensus 233 ~~~~l~~~~~~~n~~~c 249 (333)
....+..+++.+|+..+
T Consensus 292 ~~~~l~~L~l~~N~~~~ 308 (332)
T 2ft3_A 292 KRAYYNGISLFNNPVPY 308 (332)
T ss_dssp SSCCBSEEECCSSSSCG
T ss_pred ccccccceEeecCcccc
Confidence 13445677788888763
No 10
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.93 E-value=3.9e-25 Score=197.24 Aligned_cols=247 Identities=18% Similarity=0.147 Sum_probs=178.5
Q ss_pred CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhccccccccCC
Q 039997 2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGNG 81 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~~L~~~~n 81 (333)
+++++|+|++|.|++..+..|.++++|++|++++|+++++.|..|.++++|++|++++|+++......+.+|+.|++.+|
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n 131 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHEN 131 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSS
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhcccccEEECCCC
Confidence 57899999999999877778999999999999999999888999999999999999999998443344578889999998
Q ss_pred ccccccccC--CCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCc
Q 039997 82 DLYGLVERG--RDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISS 159 (333)
Q Consensus 82 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 159 (333)
.+..+.... ....+.......+...........+..+ ..+....+..+.+..++....++|+.|++++|++++..+.
T Consensus 132 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~ 210 (330)
T 1xku_A 132 EITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM-KKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAA 210 (330)
T ss_dssp CCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGC-TTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTG
T ss_pred cccccCHhHhcCCccccEEECCCCcCCccCcChhhccCC-CCcCEEECCCCccccCCccccccCCEEECCCCcCCccCHH
Confidence 887654311 1111111111111111000111111111 1222333444555555544457899999999999988889
Q ss_pred cccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEEEcccCcCcccCCCCc-------
Q 039997 160 EIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCPIPDKE------- 232 (333)
Q Consensus 160 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~------- 232 (333)
.|..+++|+.|++++|.+++..+..+..+++|+.|++++|.++.++..+..+++|+.|++++|+++...+...
T Consensus 211 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~ 290 (330)
T 1xku_A 211 SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNT 290 (330)
T ss_dssp GGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCT
T ss_pred HhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccChhhcCCccccc
Confidence 9999999999999999999877778999999999999999999766688889999999999999986543321
Q ss_pred cccccCccccCCCCCCC
Q 039997 233 QFSTFDESSYRGNLNLC 249 (333)
Q Consensus 233 ~~~~l~~~~~~~n~~~c 249 (333)
....+..+++.+|+..+
T Consensus 291 ~~~~l~~l~l~~N~~~~ 307 (330)
T 1xku_A 291 KKASYSGVSLFSNPVQY 307 (330)
T ss_dssp TSCCCSEEECCSSSSCG
T ss_pred ccccccceEeecCcccc
Confidence 12445566777787654
No 11
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.93 E-value=3.7e-25 Score=193.78 Aligned_cols=199 Identities=18% Similarity=0.121 Sum_probs=137.4
Q ss_pred CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCC-hhhhccccccccC
Q 039997 2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIP-SCITNLLFWKVGN 80 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p-~~l~~L~~L~~~~ 80 (333)
++++++++++|.++ .+|..+. +++++|+|++|+++++.+..|.++++|++|++++|.++...+ ..+.+|+.|++++
T Consensus 10 ~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~ 86 (290)
T 1p9a_G 10 ASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSH 86 (290)
T ss_dssp TTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCS
T ss_pred CCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEECCC
Confidence 56788999999988 5666554 688899999999988888888999999999999998874332 3456777888888
Q ss_pred CccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchh---hhhccccEEECCCCcccccC
Q 039997 81 GDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKG---VILEYMAGLDLSSNELTGDI 157 (333)
Q Consensus 81 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~L~~L~Ls~n~l~~~~ 157 (333)
|.+..++..... .... ....+..+.+..++. ..+++|+.|++++|++++..
T Consensus 87 N~l~~l~~~~~~---------l~~L-----------------~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~ 140 (290)
T 1p9a_G 87 NQLQSLPLLGQT---------LPAL-----------------TVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140 (290)
T ss_dssp SCCSSCCCCTTT---------CTTC-----------------CEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCC
T ss_pred CcCCcCchhhcc---------CCCC-----------------CEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccC
Confidence 877654321110 0000 111111111111110 01567788888888887777
Q ss_pred CccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEEEcccCcCcccCC
Q 039997 158 SSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCPIP 229 (333)
Q Consensus 158 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 229 (333)
+..|..+++|+.|+|++|+++++++..|..+++|+.|++++|+++.+++.+...+.|+.+++++|++.|.|.
T Consensus 141 ~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C~c~ 212 (290)
T 1p9a_G 141 PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCE 212 (290)
T ss_dssp TTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred hhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccCcCc
Confidence 777777788888888888888777777777788888888888887666666666778888888888887773
No 12
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.93 E-value=1.1e-25 Score=210.70 Aligned_cols=252 Identities=17% Similarity=0.112 Sum_probs=172.8
Q ss_pred CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhh---hccccccc
Q 039997 2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCI---TNLLFWKV 78 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l---~~L~~L~~ 78 (333)
++|++|+|++|.++...+..|.++++|++|+|++|+++++.+..|..+++|++|++++|.++...+..| .+|+.|++
T Consensus 80 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 159 (477)
T 2id5_A 80 FNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTL 159 (477)
T ss_dssp TTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEE
T ss_pred ccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEEC
Confidence 578888888888886666678888888888888888888888888888888888888888876555544 44556666
Q ss_pred cCCccccccccC--CCCcccccccccCCC--------------CCcCCCCCCCC-------ccccceEEEEeeccccccc
Q 039997 79 GNGDLYGLVERG--RDFDLEDIYNYYNST--------------VPLSLDRSDTR-------TLDTQVVVNFMTKNRYESY 135 (333)
Q Consensus 79 ~~n~~~~~~~~~--~~~~~~~~~~~~~~~--------------~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 135 (333)
.+|.+..+.... ....+.......+.. ..+.++..... .....+....+..+.+..+
T Consensus 160 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 239 (477)
T 2id5_A 160 EKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAV 239 (477)
T ss_dssp ESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSC
T ss_pred CCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccccc
Confidence 777665543210 000111110000000 00001000000 0000222233344444444
Q ss_pred hhh---hhccccEEECCCCcccccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCC
Q 039997 136 KGV---ILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTEL 211 (333)
Q Consensus 136 ~~~---~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l 211 (333)
+.. .+++|+.|+|++|.+++..+..|.++++|+.|+|++|++++..+..|..+++|+.|++++|.++++.+ .+..+
T Consensus 240 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 319 (477)
T 2id5_A 240 PYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSV 319 (477)
T ss_dssp CHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCG
T ss_pred CHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCC
Confidence 422 16789999999999998888999999999999999999998888999999999999999999998888 78889
Q ss_pred CCCCEEEcccCcCcccCCCCccccccCccccCCCCCCCCCCC
Q 039997 212 HSLSKFDVSYNNLSCPIPDKEQFSTFDESSYRGNLNLCCPPI 253 (333)
Q Consensus 212 ~~L~~L~l~~N~l~~~~~~~~~~~~l~~~~~~~n~~~c~~~~ 253 (333)
++|+.|++++|++.|.|+..+.+.+.....+.++...|..|.
T Consensus 320 ~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p~ 361 (477)
T 2id5_A 320 GNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATPE 361 (477)
T ss_dssp GGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEESG
T ss_pred cccCEEEccCCCccCccchHhHHhhhhccccCccCceeCCch
Confidence 999999999999999997655444444455666666675443
No 13
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.93 E-value=1.5e-25 Score=188.29 Aligned_cols=157 Identities=23% Similarity=0.319 Sum_probs=142.9
Q ss_pred cEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhccccccccCCccc
Q 039997 5 EILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGNGDLY 84 (333)
Q Consensus 5 ~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~~L~~~~n~~~ 84 (333)
+.++++++.++ .+|..+. +++++|++++|+|+++.+..|.++++|+.|+|++|++++..|..|..
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~------------ 78 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG------------ 78 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTT------------
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhC------------
Confidence 57899999999 5777665 78999999999999898889999999999999999999776766655
Q ss_pred cccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCccccCc
Q 039997 85 GLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDL 164 (333)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 164 (333)
+++|++|+|++|+++.+.+..|.++
T Consensus 79 -------------------------------------------------------l~~L~~L~Ls~N~l~~l~~~~f~~l 103 (220)
T 2v9t_B 79 -------------------------------------------------------LRSLNSLVLYGNKITELPKSLFEGL 103 (220)
T ss_dssp -------------------------------------------------------CSSCCEEECCSSCCCCCCTTTTTTC
T ss_pred -------------------------------------------------------CcCCCEEECCCCcCCccCHhHccCC
Confidence 3668899999999998888889999
Q ss_pred cccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEcccCcCcccCCCC
Q 039997 165 RNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPIPDK 231 (333)
Q Consensus 165 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~ 231 (333)
++|+.|+|++|++++..+..|..+++|+.|++++|.++++.+ .+..+++|+.|++++|++.|.|...
T Consensus 104 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l~ 171 (220)
T 2v9t_B 104 FSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLK 171 (220)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGGH
T ss_pred CCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCccH
Confidence 999999999999999999999999999999999999999888 7999999999999999999998644
No 14
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.92 E-value=9.9e-25 Score=202.90 Aligned_cols=113 Identities=25% Similarity=0.309 Sum_probs=90.9
Q ss_pred hccccEEECCCCcccccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEE
Q 039997 140 LEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFD 218 (333)
Q Consensus 140 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~ 218 (333)
+++|+.|++++|++++..+..|.++++|+.|+|++|.+++..+..|+.+++|+.|++++|++++..+ .+..+++|+.|+
T Consensus 298 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 377 (455)
T 3v47_A 298 FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELA 377 (455)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEE
Confidence 5678888888888888878888888888888888888887777888888888888888888888777 788888888888
Q ss_pred cccCcCcccCCCC-ccccccCccccCCCCCCCCCC
Q 039997 219 VSYNNLSCPIPDK-EQFSTFDESSYRGNLNLCCPP 252 (333)
Q Consensus 219 l~~N~l~~~~~~~-~~~~~l~~~~~~~n~~~c~~~ 252 (333)
+++|.++...+.. ..+..++.+++.+|+..|+.|
T Consensus 378 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 378 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 8888888655443 456677788888888888655
No 15
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=4.6e-25 Score=191.82 Aligned_cols=207 Identities=22% Similarity=0.198 Sum_probs=142.9
Q ss_pred CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhh---ccccccc
Q 039997 2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCIT---NLLFWKV 78 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~---~L~~L~~ 78 (333)
++|++|++++|.|++..+..|.++++|++|++++|+++++.+..|.++++|++|++++|++++..+..+. +|+.|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 5799999999999987777999999999999999999988888999999999999999999876666554 5556667
Q ss_pred cCCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeecccccc--chhh--hhccccEEECCCCccc
Q 039997 79 GNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYES--YKGV--ILEYMAGLDLSSNELT 154 (333)
Q Consensus 79 ~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~l~~L~~L~Ls~n~l~ 154 (333)
.+|.+..+...... .......+. +..+.+.. ++.. .+++|++|++++|+++
T Consensus 108 ~~n~l~~~~~~~~~--------~l~~L~~L~-----------------l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~ 162 (276)
T 2z62_A 108 VETNLASLENFPIG--------HLKTLKELN-----------------VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162 (276)
T ss_dssp TTSCCCCSTTCCCT--------TCTTCCEEE-----------------CCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred CCCCccccCchhcc--------cCCCCCEEE-----------------CcCCccceecCchhhccCCCCCEEECCCCCCC
Confidence 77766654321100 000011111 11111111 0100 1466777777777777
Q ss_pred ccCCccccCccccc----eeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEcccCcCcccCC
Q 039997 155 GDISSEIGDLRNIH----GLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPIP 229 (333)
Q Consensus 155 ~~~~~~~~~l~~L~----~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~ 229 (333)
+..+..|..+++|+ .|++++|.+++..+..+.. .+|+.|++++|.++++++ .+..+++|+.|++++|+++|.|+
T Consensus 163 ~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 163 SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp EECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred cCCHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 76666676666666 6777777777555554433 367788888888777766 56777788888888888888777
Q ss_pred CCccc
Q 039997 230 DKEQF 234 (333)
Q Consensus 230 ~~~~~ 234 (333)
...++
T Consensus 242 ~l~~l 246 (276)
T 2z62_A 242 RIDYL 246 (276)
T ss_dssp TTHHH
T ss_pred chHHH
Confidence 65443
No 16
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.92 E-value=2.9e-25 Score=195.94 Aligned_cols=226 Identities=20% Similarity=0.187 Sum_probs=144.8
Q ss_pred CcccEEECCCCcCCCCCCccccCCcccceeeccccccccc--cchhhcCCCCCCEEeCCCCcCCCCCChh---hhccccc
Q 039997 2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGP--IPHQLCQLRKLSIMDLSHNRLNGSIPSC---ITNLLFW 76 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~--~~~~f~~L~~L~~LdLs~N~l~~~~p~~---l~~L~~L 76 (333)
++|++|+|++|.++...+..|.++++|++|++++|+++.+ .+..+.++++|++|++++|.++ .+|.. +.+|+.|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEE
Confidence 5799999999999965556689999999999999999844 3677888999999999999987 44543 4566677
Q ss_pred cccCCccccccccCCCCc---ccccccccCCCCCcCCCCCCCCccccceEEEEeecccccc--chhh--hhccccEEECC
Q 039997 77 KVGNGDLYGLVERGRDFD---LEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYES--YKGV--ILEYMAGLDLS 149 (333)
Q Consensus 77 ~~~~n~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~l~~L~~L~Ls 149 (333)
++.+|.+..+........ +.......+... ......+.... ......+..+.+.. .+.. .+++|+.|+++
T Consensus 107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls 183 (306)
T 2z66_A 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR--VAFNGIFNGLS-SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183 (306)
T ss_dssp ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCE--ECSTTTTTTCT-TCCEEECTTCEEGGGEECSCCTTCTTCCEEECT
T ss_pred ECCCCcccccccchhhhhccCCCEEECCCCcCC--ccchhhcccCc-CCCEEECCCCccccccchhHHhhCcCCCEEECC
Confidence 778887766543111111 111111111100 00000111111 11222222222221 1111 15677777777
Q ss_pred CCcccccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCC-CCCEEEcccCcCccc
Q 039997 150 SNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELH-SLSKFDVSYNNLSCP 227 (333)
Q Consensus 150 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~-~L~~L~l~~N~l~~~ 227 (333)
+|++++..|..|..+++|+.|++++|++++..+..+..+++|+.|++++|.+++..+ .+..++ +|+.|++++|+++|.
T Consensus 184 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 184 QCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred CCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence 777777777777777777777777777776666667777777777777777777666 666664 777777777777777
Q ss_pred CCCC
Q 039997 228 IPDK 231 (333)
Q Consensus 228 ~~~~ 231 (333)
|+..
T Consensus 264 c~~~ 267 (306)
T 2z66_A 264 CEHQ 267 (306)
T ss_dssp GGGH
T ss_pred cChH
Confidence 7544
No 17
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.92 E-value=3.5e-25 Score=220.88 Aligned_cols=254 Identities=21% Similarity=0.201 Sum_probs=169.2
Q ss_pred CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhh---hccccccc
Q 039997 2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCI---TNLLFWKV 78 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l---~~L~~L~~ 78 (333)
++|++|+|++|.|++..|..|.++++|++|+|++|+++++.|..|.++++|+.|++++|++....+..| .+|+.|++
T Consensus 290 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L 369 (844)
T 3j0a_A 290 KDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDL 369 (844)
T ss_dssp CCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEE
T ss_pred CCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEEC
Confidence 578888888888888888888888888888888888888888888888888888888888876555444 45567777
Q ss_pred cCCccccccccCCCCcccccccc--------------------------------cCCCCCcCCCCCCCCc--------c
Q 039997 79 GNGDLYGLVERGRDFDLEDIYNY--------------------------------YNSTVPLSLDRSDTRT--------L 118 (333)
Q Consensus 79 ~~n~~~~~~~~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~--------~ 118 (333)
++|.+..+........+...... ......+.++.+.+.. .
T Consensus 370 s~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 449 (844)
T 3j0a_A 370 RDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSE 449 (844)
T ss_dssp ETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCS
T ss_pred CCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccccccccc
Confidence 77776654321111100000000 0000001111111100 0
Q ss_pred ccceEEEEeeccccc----------cchhhhhccccEEECCCCcccccCCccccCccccceeecccccCCCCchHHHhCC
Q 039997 119 DTQVVVNFMTKNRYE----------SYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNL 188 (333)
Q Consensus 119 ~~~~~~~~~~~~~~~----------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 188 (333)
...+....+..+.+. .+.+ +++|+.|+|++|++++..+..|.++++|+.|+|++|++++.++..+.
T Consensus 450 ~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~--l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~-- 525 (844)
T 3j0a_A 450 NPSLEQLFLGENMLQLAWETELCWDVFEG--LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP-- 525 (844)
T ss_dssp CTTCCBCEEESCCCSSSCCSCCCSSCSSC--BCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--
T ss_pred CCccccccCCCCccccccccccchhhhcC--cccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--
Confidence 001111112222221 1222 68899999999999999999999999999999999999988877665
Q ss_pred CCCCEEeccCCcccCCCCCCCCCCCCCEEEcccCcCcccCCCCccccccCcc--ccCC--CCCCCCCCCCCCCCCCC
Q 039997 189 KMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCPIPDKEQFSTFDES--SYRG--NLNLCCPPINKSCTNLP 261 (333)
Q Consensus 189 ~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~l~~~--~~~~--n~~~c~~~~~~~c~~~~ 261 (333)
++|+.|++++|++++..+.. +.+|+.+++++|++.|.|+..+...++... .+.+ ....|..|.........
T Consensus 526 ~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~C~c~~~~f~~~~~~~~~~~~~~~~~~~C~~p~~~~g~~l~ 600 (844)
T 3j0a_A 526 ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLF 600 (844)
T ss_dssp SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEECCCCSSSCCSHHHHHHHTTTTTCCCGGGCCCSSCSSSCSCCTT
T ss_pred ccccEEECCCCcCCCCChhH--hCCcCEEEecCCCcccccccHHHHHHHHhcCcccccccccCccCCchhhCCCccc
Confidence 88999999999999988822 358999999999999999866544443221 1222 34679888776665433
No 18
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=9.7e-24 Score=182.90 Aligned_cols=200 Identities=21% Similarity=0.228 Sum_probs=167.8
Q ss_pred cccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhh---hcccccccc
Q 039997 3 ALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCI---TNLLFWKVG 79 (333)
Q Consensus 3 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l---~~L~~L~~~ 79 (333)
+.++++++++.++ .+|..+. +++++|++++|+++.+.+..|.++++|++|++++|+++...+..| .+|+.|++.
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 4678999999999 5777665 689999999999998888899999999999999999985555444 556677777
Q ss_pred CCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCc
Q 039997 80 NGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISS 159 (333)
Q Consensus 80 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 159 (333)
+|.+..+.... +.+ +++|++|++++|.+++..+.
T Consensus 94 ~n~l~~~~~~~--------------------------------------------~~~--l~~L~~L~l~~n~l~~~~~~ 127 (270)
T 2o6q_A 94 DNKLQALPIGV--------------------------------------------FDQ--LVNLAELRLDRNQLKSLPPR 127 (270)
T ss_dssp SSCCCCCCTTT--------------------------------------------TTT--CSSCCEEECCSSCCCCCCTT
T ss_pred CCcCCcCCHhH--------------------------------------------ccc--ccCCCEEECCCCccCeeCHH
Confidence 77665532110 000 57899999999999999999
Q ss_pred cccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEcccCcCcccCCCC-cccccc
Q 039997 160 EIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPIPDK-EQFSTF 237 (333)
Q Consensus 160 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~-~~~~~l 237 (333)
.|..+++|+.|++++|.+++..+..|+.+++|+.|++++|.++++.+ .+..+++|+.|++++|.++...+.. ..+..+
T Consensus 128 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 207 (270)
T 2o6q_A 128 VFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKL 207 (270)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred HhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCC
Confidence 99999999999999999998888889999999999999999999888 7899999999999999998765542 456778
Q ss_pred CccccCCCCCCCCC
Q 039997 238 DESSYRGNLNLCCP 251 (333)
Q Consensus 238 ~~~~~~~n~~~c~~ 251 (333)
+.+.+.+|++.|+.
T Consensus 208 ~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 208 KMLQLQENPWDCTC 221 (270)
T ss_dssp CEEECCSSCBCCSS
T ss_pred CEEEecCCCeeCCC
Confidence 88899999998854
No 19
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.92 E-value=4.8e-25 Score=185.27 Aligned_cols=163 Identities=20% Similarity=0.218 Sum_probs=142.5
Q ss_pred cEEECCCCcCCCCCCccccCCcccceeeccccccccccc-hhhcCCCCCCEEeCCCCcCCCCCChhhhccccccccCCcc
Q 039997 5 EILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIP-HQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGNGDL 83 (333)
Q Consensus 5 ~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~-~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~~L~~~~n~~ 83 (333)
+++++++|.++ .+|..+. ..+++|+|++|+|+++.+ +.|..+++|+.|++++|++++..+..|..
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~----------- 79 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG----------- 79 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTT-----------
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCC-----------
Confidence 58999999999 5777665 467899999999998754 56899999999999999999665555544
Q ss_pred ccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCccccC
Q 039997 84 YGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGD 163 (333)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 163 (333)
+++|++|+|++|.+++..+..|.+
T Consensus 80 --------------------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~ 103 (220)
T 2v70_A 80 --------------------------------------------------------ASGVNEILLTSNRLENVQHKMFKG 103 (220)
T ss_dssp --------------------------------------------------------CTTCCEEECCSSCCCCCCGGGGTT
T ss_pred --------------------------------------------------------CCCCCEEECCCCccCccCHhHhcC
Confidence 466889999999999999899999
Q ss_pred ccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEcccCcCcccCCCCcccccc
Q 039997 164 LRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPIPDKEQFSTF 237 (333)
Q Consensus 164 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~l 237 (333)
+++|+.|+|++|++++..|..|..+++|+.|++++|.++++.+ .+..+++|+.|++++|+++|.|+..+...++
T Consensus 104 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~l~~~~ 178 (220)
T 2v70_A 104 LESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLAWLGEWL 178 (220)
T ss_dssp CSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGGHHHHHHH
T ss_pred CcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCchHHHHHHH
Confidence 9999999999999999889999999999999999999999988 8999999999999999999999755433333
No 20
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=4.3e-24 Score=185.31 Aligned_cols=182 Identities=24% Similarity=0.268 Sum_probs=153.5
Q ss_pred CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhh---hccccccc
Q 039997 2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCI---TNLLFWKV 78 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l---~~L~~L~~ 78 (333)
++|+.|++++|.++. . ..+..+++|++|++++|+++++ ..+..+++|++|++++|.+++..+..+ .+|+.|++
T Consensus 41 ~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 116 (272)
T 3rfs_A 41 NSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116 (272)
T ss_dssp TTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEEC
Confidence 578999999999983 3 3588899999999999999864 478999999999999999997666554 45666777
Q ss_pred cCCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCC
Q 039997 79 GNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDIS 158 (333)
Q Consensus 79 ~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 158 (333)
.+|.+..+..... . .+++|++|++++|++++..+
T Consensus 117 ~~n~l~~~~~~~~--------------------------------------------~--~l~~L~~L~L~~n~l~~~~~ 150 (272)
T 3rfs_A 117 VENQLQSLPDGVF--------------------------------------------D--KLTNLTYLNLAHNQLQSLPK 150 (272)
T ss_dssp TTSCCCCCCTTTT--------------------------------------------T--TCTTCCEEECCSSCCCCCCT
T ss_pred CCCcCCccCHHHh--------------------------------------------c--cCCCCCEEECCCCccCccCH
Confidence 7776655321100 0 05789999999999998888
Q ss_pred ccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEcccCcCcccCCCCcc
Q 039997 159 SEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPIPDKEQ 233 (333)
Q Consensus 159 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~ 233 (333)
..|..+++|+.|++++|++++..+..++.+++|+.|++++|.+++..+ .+..+++|+.|++++|++.|.||....
T Consensus 151 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~~ 226 (272)
T 3rfs_A 151 GVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRY 226 (272)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHH
T ss_pred HHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCcHHHH
Confidence 889999999999999999998888889999999999999999999888 789999999999999999999986643
No 21
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.91 E-value=1.2e-24 Score=209.56 Aligned_cols=238 Identities=21% Similarity=0.197 Sum_probs=160.5
Q ss_pred CcccEEECCCCcCCCC--CCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCC-hhh---hcccc
Q 039997 2 SALEILDLRDNYFSGR--IPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIP-SCI---TNLLF 75 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~~--~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p-~~l---~~L~~ 75 (333)
++|++|++++|.+++. .|..+.++++|++|++++|.+++ .|..|..+++|+.|++++|++.+..| ..+ .+|+.
T Consensus 350 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 428 (606)
T 3vq2_A 350 PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLY 428 (606)
T ss_dssp TTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCE
T ss_pred CCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCE
Confidence 5788888888888755 37778888888888888888874 44678888888888888888876655 333 45556
Q ss_pred ccccCCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeecccccc--chh--hhhccccEEECCCC
Q 039997 76 WKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYES--YKG--VILEYMAGLDLSSN 151 (333)
Q Consensus 76 L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~l~~L~~L~Ls~n 151 (333)
|++++|.+.+....... .......+ .+..+.+.. .+. ..+++|+.|++++|
T Consensus 429 L~l~~n~l~~~~~~~~~--------~l~~L~~L-----------------~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n 483 (606)
T 3vq2_A 429 LDISYTNTKIDFDGIFL--------GLTSLNTL-----------------KMAGNSFKDNTLSNVFANTTNLTFLDLSKC 483 (606)
T ss_dssp EECTTSCCEECCTTTTT--------TCTTCCEE-----------------ECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred EECcCCCCCccchhhhc--------CCCCCCEE-----------------ECCCCcCCCcchHHhhccCCCCCEEECCCC
Confidence 66677766552211000 00001111 111111111 111 01688999999999
Q ss_pred cccccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCCCCCCCC-CCCEEEcccCcCcccCCC
Q 039997 152 ELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELH-SLSKFDVSYNNLSCPIPD 230 (333)
Q Consensus 152 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~ 230 (333)
++++..|..|.++++|+.|++++|++++..|..+..+++|+.|++++|+++.+++.+..++ +|+.+++++|++.|.|+.
T Consensus 484 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 484 QLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred cCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence 9999999999999999999999999998889999999999999999999997666788886 599999999999999987
Q ss_pred CccccccCccccCCCCCCCCCCCCCCCCCCCCcCCCCCCC
Q 039997 231 KEQFSTFDESSYRGNLNLCCPPINKSCTNLPELLETSSKG 270 (333)
Q Consensus 231 ~~~~~~l~~~~~~~n~~~c~~~~~~~c~~~~~~~~~~~~~ 270 (333)
.+...+++. +......+....|..|+...+....+
T Consensus 564 ~~~~~~l~~-----~~~~~~~~~~~~C~~p~~~~~~~l~~ 598 (606)
T 3vq2_A 564 QKFLQWVKE-----QKQFLVNVEQMTCATPVEMNTSLVLD 598 (606)
T ss_dssp HHHHTTTTT-----SSSSBSSGGGCCCC------------
T ss_pred HHHHHHHHc-----CcccccCCccceeCCChHhCCCEeee
Confidence 654445432 22222235567888777666654433
No 22
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.91 E-value=1.5e-24 Score=203.08 Aligned_cols=249 Identities=22% Similarity=0.178 Sum_probs=179.7
Q ss_pred CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhh---hccccccc
Q 039997 2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCI---TNLLFWKV 78 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l---~~L~~L~~ 78 (333)
++|++|+|++|.|++..|..|.++++|++|+|++|+++.+.+..|.++++|++|++++|++....|..| .+|+.|++
T Consensus 56 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 135 (477)
T 2id5_A 56 PHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEV 135 (477)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEE
T ss_pred CCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEEC
Confidence 689999999999998889999999999999999999998888889999999999999999987766655 45667778
Q ss_pred cCCccccccccCCC--CcccccccccCCCC--------------CcCCCCCCCC--------ccccceEEEEeecccccc
Q 039997 79 GNGDLYGLVERGRD--FDLEDIYNYYNSTV--------------PLSLDRSDTR--------TLDTQVVVNFMTKNRYES 134 (333)
Q Consensus 79 ~~n~~~~~~~~~~~--~~~~~~~~~~~~~~--------------~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~ 134 (333)
.+|.+..+...... ..+.......+... .+.+...... ..................
T Consensus 136 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~ 215 (477)
T 2id5_A 136 GDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDT 215 (477)
T ss_dssp CCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCE
T ss_pred CCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccc
Confidence 88887665432111 11111111111111 1111111110 111111111111111111
Q ss_pred chhhh--hccccEEECCCCcccccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCC
Q 039997 135 YKGVI--LEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTEL 211 (333)
Q Consensus 135 ~~~~~--l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l 211 (333)
++... ..+|+.|++++|++++..+..|.++++|+.|+|++|.+++..+..|..+++|+.|++++|.+++..+ .+..+
T Consensus 216 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 295 (477)
T 2id5_A 216 MTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGL 295 (477)
T ss_dssp ECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTC
T ss_pred cCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCc
Confidence 11111 2378999999999997766789999999999999999998888889999999999999999999888 89999
Q ss_pred CCCCEEEcccCcCcccCCCC-ccccccCccccCCCCCCCC
Q 039997 212 HSLSKFDVSYNNLSCPIPDK-EQFSTFDESSYRGNLNLCC 250 (333)
Q Consensus 212 ~~L~~L~l~~N~l~~~~~~~-~~~~~l~~~~~~~n~~~c~ 250 (333)
++|+.|++++|.++...+.. ..+..++.+++.+|++.|+
T Consensus 296 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~ 335 (477)
T 2id5_A 296 NYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACD 335 (477)
T ss_dssp TTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred ccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCc
Confidence 99999999999998765433 3556788889999999985
No 23
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.91 E-value=1.6e-23 Score=179.49 Aligned_cols=176 Identities=19% Similarity=0.232 Sum_probs=145.2
Q ss_pred cccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhh---hccccccccCCccccccccCCCCccccccccc
Q 039997 26 SNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCI---TNLLFWKVGNGDLYGLVERGRDFDLEDIYNYY 102 (333)
Q Consensus 26 ~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l---~~L~~L~~~~n~~~~~~~~~~~~~~~~~~~~~ 102 (333)
.+.++++++++.++.+ |..+. ++++.|++++|.+++..+..| .+|+.|++++|.+.++.....
T Consensus 14 ~~~~~l~~~~~~l~~~-p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~----------- 79 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSV-PSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVF----------- 79 (251)
T ss_dssp GGGTEEECTTCCCSSC-CSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT-----------
T ss_pred CCCeEEecCCCCcccc-CCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHh-----------
Confidence 4678899999999944 44443 689999999999997777665 455667777776665321100
Q ss_pred CCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCccccCccccceeecccccCCCCch
Q 039997 103 NSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIP 182 (333)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 182 (333)
. .+++|++|++++|++++..+..|..+++|+.|+|++|++++..+
T Consensus 80 ---------------------------------~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 124 (251)
T 3m19_A 80 ---------------------------------D--DLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPS 124 (251)
T ss_dssp ---------------------------------T--TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred ---------------------------------c--cCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcCh
Confidence 0 05789999999999998888999999999999999999998888
Q ss_pred HHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEcccCcCcccCCCC-ccccccCccccCCCCCCCC
Q 039997 183 ESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPIPDK-EQFSTFDESSYRGNLNLCC 250 (333)
Q Consensus 183 ~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~-~~~~~l~~~~~~~n~~~c~ 250 (333)
..|..+++|+.|++++|.++++.+ .+..+++|+.|++++|.++...+.. ..+..++.+.+.+|++.|.
T Consensus 125 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 125 GVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred hHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 889999999999999999999888 8999999999999999999776533 4567788889999999885
No 24
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=5.1e-24 Score=186.49 Aligned_cols=173 Identities=23% Similarity=0.180 Sum_probs=131.2
Q ss_pred CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChh---hhccccccc
Q 039997 2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSC---ITNLLFWKV 78 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~---l~~L~~L~~ 78 (333)
+++++|+|++|.|++..+..|.++++|++|+|++|+|+++.+. ..+++|++|++++|+++ .+|.. +.+|+.|++
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l 107 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDV 107 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEEC
Confidence 5789999999999988888999999999999999999966553 78999999999999998 55654 456778888
Q ss_pred cCCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhh---hhccccEEECCCCcccc
Q 039997 79 GNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGV---ILEYMAGLDLSSNELTG 155 (333)
Q Consensus 79 ~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~L~~L~Ls~n~l~~ 155 (333)
.+|.+..+....... .... ....+..+.+..++.. .+++|+.|+|++|++++
T Consensus 108 ~~N~l~~l~~~~~~~--------l~~L-----------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 162 (290)
T 1p9a_G 108 SFNRLTSLPLGALRG--------LGEL-----------------QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE 162 (290)
T ss_dssp CSSCCCCCCSSTTTT--------CTTC-----------------CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred CCCcCcccCHHHHcC--------CCCC-----------------CEEECCCCCCCccChhhcccccCCCEEECCCCcCCc
Confidence 888887654211110 0011 1111222222222211 16789999999999998
Q ss_pred cCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccC
Q 039997 156 DISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNG 203 (333)
Q Consensus 156 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 203 (333)
+.+..|..+++|+.|+|++|+++. +|..+..+++|+.+++++|.+..
T Consensus 163 l~~~~~~~l~~L~~L~L~~N~l~~-ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 163 LPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCCCSEEECCSCCBCC
T ss_pred cCHHHhcCcCCCCEEECCCCcCCc-cChhhcccccCCeEEeCCCCccC
Confidence 888889999999999999999995 45566677899999999999875
No 25
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.91 E-value=1.2e-24 Score=192.66 Aligned_cols=220 Identities=22% Similarity=0.345 Sum_probs=171.1
Q ss_pred CcccEEECCCCcCCC--CCCccccCCcccceeeccc-cccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhc---ccc
Q 039997 2 SALEILDLRDNYFSG--RIPYGINEHSNLRALLLKG-NYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITN---LLF 75 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~--~~~~~~~~l~~L~~L~L~~-N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~---L~~ 75 (333)
.+++.|+|++|.+++ .+|..|.++++|++|++++ |.+.+..|..|..+++|++|++++|++++.+|..+.. |+.
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 578999999999998 8999999999999999995 9999899999999999999999999999888887755 556
Q ss_pred ccccCCccccccc-cCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccc-cchhhh--hc-cccEEECCC
Q 039997 76 WKVGNGDLYGLVE-RGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYE-SYKGVI--LE-YMAGLDLSS 150 (333)
Q Consensus 76 L~~~~n~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--l~-~L~~L~Ls~ 150 (333)
|++++|.+.+... ... .......+. +..+.+. ..+... +. .|+.|++++
T Consensus 130 L~Ls~N~l~~~~p~~~~---------~l~~L~~L~-----------------L~~N~l~~~~p~~l~~l~~~L~~L~L~~ 183 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSIS---------SLPNLVGIT-----------------FDGNRISGAIPDSYGSFSKLFTSMTISR 183 (313)
T ss_dssp EECCSSEEESCCCGGGG---------GCTTCCEEE-----------------CCSSCCEEECCGGGGCCCTTCCEEECCS
T ss_pred EeCCCCccCCcCChHHh---------cCCCCCeEE-----------------CcCCcccCcCCHHHhhhhhcCcEEECcC
Confidence 6667777664211 100 011111111 1122211 111111 33 799999999
Q ss_pred CcccccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEEEcccCcCcccCCC
Q 039997 151 NELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCPIPD 230 (333)
Q Consensus 151 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 230 (333)
|++++..|..+..++ |+.|++++|.+++..|..|..+++|+.|++++|.+++..+.+..+++|+.|++++|.+++..|.
T Consensus 184 N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 262 (313)
T 1ogq_A 184 NRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQ 262 (313)
T ss_dssp SEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCG
T ss_pred CeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCCh
Confidence 999989999999887 9999999999998889999999999999999999998777778889999999999999877665
Q ss_pred C-ccccccCccccCCCCCC
Q 039997 231 K-EQFSTFDESSYRGNLNL 248 (333)
Q Consensus 231 ~-~~~~~l~~~~~~~n~~~ 248 (333)
. ..+..++.+++.+|...
T Consensus 263 ~l~~l~~L~~L~Ls~N~l~ 281 (313)
T 1ogq_A 263 GLTQLKFLHSLNVSFNNLC 281 (313)
T ss_dssp GGGGCTTCCEEECCSSEEE
T ss_pred HHhcCcCCCEEECcCCccc
Confidence 3 45667777888887654
No 26
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.91 E-value=9.9e-24 Score=192.43 Aligned_cols=85 Identities=19% Similarity=0.231 Sum_probs=58.9
Q ss_pred CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChh---hhccccccc
Q 039997 2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSC---ITNLLFWKV 78 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~---l~~L~~L~~ 78 (333)
++|++|+|++|.|++..+..|.++++|++|++++|+++++.|..|.++++|++|++++|+++...+.. +.+|+.|++
T Consensus 69 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 148 (390)
T 3o6n_A 69 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM 148 (390)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEEC
Confidence 46777777777777666667777777777777777777777777777777777777777777433322 345556666
Q ss_pred cCCccccc
Q 039997 79 GNGDLYGL 86 (333)
Q Consensus 79 ~~n~~~~~ 86 (333)
.+|.+..+
T Consensus 149 ~~n~l~~~ 156 (390)
T 3o6n_A 149 SNNNLERI 156 (390)
T ss_dssp CSSCCCBC
T ss_pred CCCccCcc
Confidence 66666554
No 27
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.91 E-value=1.3e-23 Score=207.47 Aligned_cols=245 Identities=28% Similarity=0.363 Sum_probs=160.0
Q ss_pred CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhh---ccccccc
Q 039997 2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCIT---NLLFWKV 78 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~---~L~~L~~ 78 (333)
++|++|++++|.+++.+|..+.++++|++|++++|++++..|..|..+++|+.|++++|++++.+|..+. +|+.|++
T Consensus 394 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 473 (768)
T 3rgz_A 394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL 473 (768)
T ss_dssp CCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred CCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEe
Confidence 3566777777777766777777777777777777777777777777777777777777777766666554 3445556
Q ss_pred cCCcccccccc-CC-CCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccc-cchhhh--hccccEEECCCCcc
Q 039997 79 GNGDLYGLVER-GR-DFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYE-SYKGVI--LEYMAGLDLSSNEL 153 (333)
Q Consensus 79 ~~n~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--l~~L~~L~Ls~n~l 153 (333)
.+|.+.+.... .. ...+.......+.... .....+..+ ..+....+..+.+. ..+... +++|+.|++++|.+
T Consensus 474 ~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~--~~p~~~~~l-~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 550 (768)
T 3rgz_A 474 DFNDLTGEIPSGLSNCTNLNWISLSNNRLTG--EIPKWIGRL-ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF 550 (768)
T ss_dssp CSSCCCSCCCGGGGGCTTCCEEECCSSCCCS--CCCGGGGGC-TTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEE
T ss_pred cCCcccCcCCHHHhcCCCCCEEEccCCccCC--cCChHHhcC-CCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCcc
Confidence 66666542211 00 0001111111110000 000001111 11222233333332 222211 67788888888887
Q ss_pred cccCCc----------------------------------------------------------------------cccC
Q 039997 154 TGDISS----------------------------------------------------------------------EIGD 163 (333)
Q Consensus 154 ~~~~~~----------------------------------------------------------------------~~~~ 163 (333)
++..|. .+..
T Consensus 551 ~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~ 630 (768)
T 3rgz_A 551 NGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDN 630 (768)
T ss_dssp ESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSS
T ss_pred CCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhc
Confidence 765553 3445
Q ss_pred ccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEcccCcCcccCCCC-ccccccCccc
Q 039997 164 LRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPIPDK-EQFSTFDESS 241 (333)
Q Consensus 164 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~-~~~~~l~~~~ 241 (333)
+++|+.|||++|++++.+|..++.+++|+.|+|++|.+++..| .++.+++|+.||+++|.+++.+|.. ..+..++.++
T Consensus 631 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ 710 (768)
T 3rgz_A 631 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID 710 (768)
T ss_dssp SBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEE
T ss_pred cccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEE
Confidence 6789999999999999999999999999999999999999888 9999999999999999999988865 4666777888
Q ss_pred cCCCCCCC
Q 039997 242 YRGNLNLC 249 (333)
Q Consensus 242 ~~~n~~~c 249 (333)
+..|...-
T Consensus 711 ls~N~l~g 718 (768)
T 3rgz_A 711 LSNNNLSG 718 (768)
T ss_dssp CCSSEEEE
T ss_pred CcCCcccc
Confidence 88876543
No 28
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=2.6e-24 Score=186.99 Aligned_cols=178 Identities=21% Similarity=0.183 Sum_probs=134.1
Q ss_pred CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhh---hccccccc
Q 039997 2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCI---TNLLFWKV 78 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l---~~L~~L~~ 78 (333)
++|++|++++|.+++..+..|.++++|++|++++|+++++.+..|.++++|++|++++|++.+..+..+ .+|+.|++
T Consensus 52 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 131 (276)
T 2z62_A 52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 131 (276)
T ss_dssp TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEEC
T ss_pred cCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEEC
Confidence 579999999999998888899999999999999999998988999999999999999999986555444 56667777
Q ss_pred cCCcccccc--ccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhh---hhcccc----EEECC
Q 039997 79 GNGDLYGLV--ERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGV---ILEYMA----GLDLS 149 (333)
Q Consensus 79 ~~n~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~L~----~L~Ls 149 (333)
.+|.+..+. .... .......+. +..+.+...... .+..|+ .|+++
T Consensus 132 ~~n~l~~~~l~~~~~---------~l~~L~~L~-----------------Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls 185 (276)
T 2z62_A 132 AHNLIQSFKLPEYFS---------NLTNLEHLD-----------------LSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185 (276)
T ss_dssp CSSCCCCCCCCGGGG---------GCTTCCEEE-----------------CCSSCCCEECGGGGHHHHTCTTCCEEEECC
T ss_pred cCCccceecCchhhc---------cCCCCCEEE-----------------CCCCCCCcCCHHHhhhhhhccccceeeecC
Confidence 787776521 1110 011111112 222222221111 134455 89999
Q ss_pred CCcccccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC
Q 039997 150 SNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP 206 (333)
Q Consensus 150 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 206 (333)
+|.+++..+..+.. .+|+.|++++|++++.++..|+.+++|+.|++++|.+++..+
T Consensus 186 ~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 186 LNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp SSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred CCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 99999887777765 489999999999998888889999999999999999986443
No 29
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.91 E-value=3.7e-24 Score=199.03 Aligned_cols=234 Identities=20% Similarity=0.247 Sum_probs=167.6
Q ss_pred CcccEEECCCCcCCCCCCcc--ccCCcccceeeccccccccccchh-hcCCCCCCEEeCCCCcCCCCCChhhh-------
Q 039997 2 SALEILDLRDNYFSGRIPYG--INEHSNLRALLLKGNYLQGPIPHQ-LCQLRKLSIMDLSHNRLNGSIPSCIT------- 71 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~~~~~~--~~~l~~L~~L~L~~N~i~~~~~~~-f~~L~~L~~LdLs~N~l~~~~p~~l~------- 71 (333)
++|++|+|++|.+++..+.. |.++++|++|++++|+++++.|.. |..+++|++|++++|++++..|..+.
T Consensus 103 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L 182 (455)
T 3v47_A 103 ANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHF 182 (455)
T ss_dssp TTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEE
T ss_pred ccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccc
Confidence 57999999999998755444 889999999999999999887766 88999999999999999876665443
Q ss_pred ------------------------------ccccccccCCccccccccCC-----CCccccc------------------
Q 039997 72 ------------------------------NLLFWKVGNGDLYGLVERGR-----DFDLEDI------------------ 98 (333)
Q Consensus 72 ------------------------------~L~~L~~~~n~~~~~~~~~~-----~~~~~~~------------------ 98 (333)
+|+.|++++|.+.+...... .......
T Consensus 183 ~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 262 (455)
T 3v47_A 183 TLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFK 262 (455)
T ss_dssp EEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSC
T ss_pred cccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhc
Confidence 35566666665543110000 0000000
Q ss_pred --------ccccCCCCCcCCCCCCCCc-------cccceEEEEeeccccccchhh---hhccccEEECCCCcccccCCcc
Q 039997 99 --------YNYYNSTVPLSLDRSDTRT-------LDTQVVVNFMTKNRYESYKGV---ILEYMAGLDLSSNELTGDISSE 160 (333)
Q Consensus 99 --------~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~---~l~~L~~L~Ls~n~l~~~~~~~ 160 (333)
.........+.++.+.+.. ....+....+..+.+...... .+++|+.|++++|.+++..+..
T Consensus 263 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 342 (455)
T 3v47_A 263 DPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRM 342 (455)
T ss_dssp CCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGG
T ss_pred cCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhH
Confidence 0000111122222222111 011233334444444433221 1688999999999999998999
Q ss_pred ccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEcccCcCcccCCCCcccc
Q 039997 161 IGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPIPDKEQFS 235 (333)
Q Consensus 161 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~~ 235 (333)
|.++++|+.|+|++|++++..|..|..+++|+.|++++|+++++++ .+..+++|+.|++++|+++|.||...++.
T Consensus 343 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~ 418 (455)
T 3v47_A 343 FENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLS 418 (455)
T ss_dssp GTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHH
T ss_pred hcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcchHHH
Confidence 9999999999999999998889999999999999999999999888 78999999999999999999999776553
No 30
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.91 E-value=7.6e-24 Score=193.20 Aligned_cols=245 Identities=18% Similarity=0.125 Sum_probs=148.3
Q ss_pred CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhh---hccccccc
Q 039997 2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCI---TNLLFWKV 78 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l---~~L~~L~~ 78 (333)
++|++|+|++|.+++..|..|.++++|++|++++|+++.+.+..|..+++|++|++++|++++..|..+ .+|+.|++
T Consensus 93 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 172 (390)
T 3o6n_A 93 HTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQL 172 (390)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEEC
T ss_pred CCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEEC
Confidence 579999999999998888889999999999999999997777778999999999999999987666555 45667777
Q ss_pred cCCccccccccCCCCcccccccccCC---------CCCcCCCCCCCCcc----ccceEEEEeeccccccchhh-hhcccc
Q 039997 79 GNGDLYGLVERGRDFDLEDIYNYYNS---------TVPLSLDRSDTRTL----DTQVVVNFMTKNRYESYKGV-ILEYMA 144 (333)
Q Consensus 79 ~~n~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~l~~L~ 144 (333)
.+|.+..+.... ...+.......+. ...+.++...+... ........+..+.+...+.. .+++|+
T Consensus 173 ~~n~l~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~ 251 (390)
T 3o6n_A 173 SSNRLTHVDLSL-IPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLV 251 (390)
T ss_dssp CSSCCSBCCGGG-CTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCS
T ss_pred CCCcCCcccccc-ccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCcc
Confidence 888776642110 0000000000000 00011111111000 00111222222222222111 145666
Q ss_pred EEECCCCcccccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEEEcccCcC
Q 039997 145 GLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNL 224 (333)
Q Consensus 145 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l 224 (333)
.|++++|.+++..|..|..+++|+.|++++|++++ .+..+..+++|+.|++++|.++.+++.+..+++|+.|++++|++
T Consensus 252 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i 330 (390)
T 3o6n_A 252 EVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSI 330 (390)
T ss_dssp EEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCC
T ss_pred EEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCcc
Confidence 77777777666666666666777777777776664 33444556667777777776665544555566667777777666
Q ss_pred cccCCCCccccccCccccCCCCCCCC
Q 039997 225 SCPIPDKEQFSTFDESSYRGNLNLCC 250 (333)
Q Consensus 225 ~~~~~~~~~~~~l~~~~~~~n~~~c~ 250 (333)
+... ...+..++.+++.+|++.|+
T Consensus 331 ~~~~--~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 331 VTLK--LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp CCCC--CCTTCCCSEEECCSSCEEHH
T ss_pred ceeC--chhhccCCEEEcCCCCccch
Confidence 5432 33455666666777776663
No 31
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.90 E-value=4.6e-24 Score=190.07 Aligned_cols=205 Identities=19% Similarity=0.258 Sum_probs=126.4
Q ss_pred CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhccc---cccc
Q 039997 2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLL---FWKV 78 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~---~L~~ 78 (333)
++++.|+|++|.++ .+|..+..+++|++|+|++|.++ ..|..|..+++|++|++++|+++ .+|..+.+++ .|++
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 57899999999999 78888999999999999999999 77888999999999999999999 7787776554 5555
Q ss_pred cCCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCC
Q 039997 79 GNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDIS 158 (333)
Q Consensus 79 ~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 158 (333)
.+|...+... ...... .+. ..+.+ +++|+.|++++|+++ ..|
T Consensus 158 ~~n~~~~~~p---~~~~~~-----------~~~---------------------~~~~~--l~~L~~L~L~~n~l~-~lp 199 (328)
T 4fcg_A 158 RACPELTELP---EPLAST-----------DAS---------------------GEHQG--LVNLQSLRLEWTGIR-SLP 199 (328)
T ss_dssp EEETTCCCCC---SCSEEE-----------C-C---------------------CCEEE--STTCCEEEEEEECCC-CCC
T ss_pred CCCCCccccC---hhHhhc-----------cch---------------------hhhcc--CCCCCEEECcCCCcC-cch
Confidence 5554433111 000000 000 00000 345555555555555 444
Q ss_pred ccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEcccCcCcccCCCC-ccccc
Q 039997 159 SEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPIPDK-EQFST 236 (333)
Q Consensus 159 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~-~~~~~ 236 (333)
..+.++++|+.|++++|++++. |..+..+++|+.|++++|.+.+..| .+..+++|+.|++++|.+.+..|.. ..+..
T Consensus 200 ~~l~~l~~L~~L~L~~N~l~~l-~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~ 278 (328)
T 4fcg_A 200 ASIANLQNLKSLKIRNSPLSAL-GPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQ 278 (328)
T ss_dssp GGGGGCTTCCEEEEESSCCCCC-CGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTT
T ss_pred HhhcCCCCCCEEEccCCCCCcC-chhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCC
Confidence 4555555555555555555533 2345555555555555555555544 5555555555555555555444432 23444
Q ss_pred cCccccCCCCCC
Q 039997 237 FDESSYRGNLNL 248 (333)
Q Consensus 237 l~~~~~~~n~~~ 248 (333)
++.+++.+|...
T Consensus 279 L~~L~L~~n~~~ 290 (328)
T 4fcg_A 279 LEKLDLRGCVNL 290 (328)
T ss_dssp CCEEECTTCTTC
T ss_pred CCEEeCCCCCch
Confidence 445555554433
No 32
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.90 E-value=8.1e-24 Score=190.46 Aligned_cols=87 Identities=26% Similarity=0.264 Sum_probs=73.7
Q ss_pred CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhh---hccccccc
Q 039997 2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCI---TNLLFWKV 78 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l---~~L~~L~~ 78 (333)
++|++|++++|.|++..+..|.++++|++|++++|+++++.|++|.++++|++|++++|++++..+..+ .+|+.|++
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence 579999999999997777789999999999999999998889999999999999999999995544434 46667778
Q ss_pred cCCccccccc
Q 039997 79 GNGDLYGLVE 88 (333)
Q Consensus 79 ~~n~~~~~~~ 88 (333)
.+|.+..+..
T Consensus 132 ~~n~l~~l~~ 141 (353)
T 2z80_A 132 LGNPYKTLGE 141 (353)
T ss_dssp TTCCCSSSCS
T ss_pred CCCCCcccCc
Confidence 8887776543
No 33
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=1.5e-23 Score=201.44 Aligned_cols=245 Identities=17% Similarity=0.126 Sum_probs=157.4
Q ss_pred CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhh---ccccccc
Q 039997 2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCIT---NLLFWKV 78 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~---~L~~L~~ 78 (333)
++|++|+|++|.|++..|..|+++++|++|+|++|.++.+.+..|..+++|++|++++|.+++..|..+. +|+.|++
T Consensus 99 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 178 (597)
T 3oja_B 99 HTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQL 178 (597)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEEC
Confidence 5799999999999988888899999999999999999988888889999999999999999977776554 5567777
Q ss_pred cCCccccccccCCCCcccccccccC---------CCCCcCCCCCCCCcc----ccceEEEEeeccccccchhh-hhcccc
Q 039997 79 GNGDLYGLVERGRDFDLEDIYNYYN---------STVPLSLDRSDTRTL----DTQVVVNFMTKNRYESYKGV-ILEYMA 144 (333)
Q Consensus 79 ~~n~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~l~~L~ 144 (333)
++|.+.++.... ...+.......+ ....+.++.+.+... ...+....+..+.+...... .+++|+
T Consensus 179 ~~N~l~~~~~~~-l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~ 257 (597)
T 3oja_B 179 SSNRLTHVDLSL-IPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLV 257 (597)
T ss_dssp TTSCCSBCCGGG-CTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCS
T ss_pred cCCCCCCcChhh-hhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCC
Confidence 888776642111 000000000000 000111111111100 01112222233332222211 156777
Q ss_pred EEECCCCcccccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEEEcccCcC
Q 039997 145 GLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNL 224 (333)
Q Consensus 145 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l 224 (333)
.|+|++|.+++..|..|.++++|+.|+|++|.+++ .|..+..+++|+.|++++|.++.+++.+..+++|+.|++++|.+
T Consensus 258 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l 336 (597)
T 3oja_B 258 EVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSI 336 (597)
T ss_dssp EEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCC
T ss_pred EEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCC
Confidence 77777777777777777777777777777777774 34455667777777777777776555666667777777777777
Q ss_pred cccCCCCccccccCccccCCCCCCCC
Q 039997 225 SCPIPDKEQFSTFDESSYRGNLNLCC 250 (333)
Q Consensus 225 ~~~~~~~~~~~~l~~~~~~~n~~~c~ 250 (333)
+... ...+..+..+++.+|++.|.
T Consensus 337 ~~~~--~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 337 VTLK--LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp CCCC--CCTTCCCSEEECCSSCEEHH
T ss_pred CCcC--hhhcCCCCEEEeeCCCCCCh
Confidence 6542 33456667777777777763
No 34
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.90 E-value=1.8e-23 Score=176.70 Aligned_cols=184 Identities=23% Similarity=0.292 Sum_probs=150.9
Q ss_pred ccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhccccccccCCcc
Q 039997 4 LEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGNGDL 83 (333)
Q Consensus 4 L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~~L~~~~n~~ 83 (333)
-+.++.+++.++ .+|..+. ++|++|+|++|+|+++.|..|.++++|++|+|++|+++...+..|..
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~----------- 86 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDS----------- 86 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-----------
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhccc-----------
Confidence 357899999998 6777665 89999999999999999999999999999999999998544444443
Q ss_pred ccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCccccC
Q 039997 84 YGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGD 163 (333)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 163 (333)
+++|+.|+|++|+++++.+..|..
T Consensus 87 --------------------------------------------------------l~~L~~L~Ls~N~l~~l~~~~~~~ 110 (229)
T 3e6j_A 87 --------------------------------------------------------LTQLTVLDLGTNQLTVLPSAVFDR 110 (229)
T ss_dssp --------------------------------------------------------CTTCCEEECCSSCCCCCCTTTTTT
T ss_pred --------------------------------------------------------CCCcCEEECCCCcCCccChhHhCc
Confidence 467889999999999888888999
Q ss_pred ccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEcccCcCcccCCCCccccccCc---
Q 039997 164 LRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPIPDKEQFSTFDE--- 239 (333)
Q Consensus 164 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~l~~--- 239 (333)
+++|+.|+|++|+|+ .+|..+..+++|+.|++++|+++++.+ .+..+++|+.|++++|++.|.|+....+..+..
T Consensus 111 l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~l~~~~~~~~ 189 (229)
T 3e6j_A 111 LVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRDIMYLRNWVADHT 189 (229)
T ss_dssp CTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBGGGHHHHHHHHHCG
T ss_pred chhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcchhHHHHHHHHhCc
Confidence 999999999999999 557778999999999999999999887 799999999999999999999975433322211
Q ss_pred ---cccCCCCCCCCCCCCCCCCCC
Q 039997 240 ---SSYRGNLNLCCPPINKSCTNL 260 (333)
Q Consensus 240 ---~~~~~n~~~c~~~~~~~c~~~ 260 (333)
...++++ +..++...|..+
T Consensus 190 ~~~~~~~g~~--v~~~~~~~C~~~ 211 (229)
T 3e6j_A 190 SIAMRWDGKA--VNDPDSAKCAGT 211 (229)
T ss_dssp GGEEEESSSE--EECTTCSBBTTT
T ss_pred cccccccCcc--cCCCCcCccCCC
Confidence 1223332 345666778754
No 35
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.90 E-value=3.1e-24 Score=206.64 Aligned_cols=259 Identities=23% Similarity=0.205 Sum_probs=122.7
Q ss_pred CcccEEECCCCcCCCCCCccccCCcccceeecccccccc-ccchhhcCCCCCCEEeCCCCcCCCCC--Chh---hhcccc
Q 039997 2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQG-PIPHQLCQLRKLSIMDLSHNRLNGSI--PSC---ITNLLF 75 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~f~~L~~L~~LdLs~N~l~~~~--p~~---l~~L~~ 75 (333)
++|++|++++|.+++..|..+.++++|++|++++|.+.+ +.+..|..+++|++|++++|.+++.. +.. +.+|+.
T Consensus 301 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~ 380 (606)
T 3t6q_A 301 STLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQS 380 (606)
T ss_dssp TTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCE
T ss_pred ccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCE
Confidence 467777777777776666667777777777777776653 33344666666666666666665432 222 334445
Q ss_pred ccccCCccccccccCC--CCcccccccccC---------------CCCCcCCCCCCC--------CccccceEEEEeecc
Q 039997 76 WKVGNGDLYGLVERGR--DFDLEDIYNYYN---------------STVPLSLDRSDT--------RTLDTQVVVNFMTKN 130 (333)
Q Consensus 76 L~~~~n~~~~~~~~~~--~~~~~~~~~~~~---------------~~~~~~~~~~~~--------~~~~~~~~~~~~~~~ 130 (333)
|++.+|.+.+...... ...+.......+ ....+.++.+.+ ... .......+..+
T Consensus 381 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~L~~n 459 (606)
T 3t6q_A 381 LNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGL-PALQHLNLQGN 459 (606)
T ss_dssp EECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTC-TTCCEEECTTC
T ss_pred EECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCC-CCCCEEECCCC
Confidence 5555555443321110 000000000000 000011111100 001 11111222222
Q ss_pred cccc--ch----hhhhccccEEECCCCcccccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCC
Q 039997 131 RYES--YK----GVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQ 204 (333)
Q Consensus 131 ~~~~--~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 204 (333)
.+.. ++ -..+++|+.|++++|++++..|..|..+++|+.|+|++|++++..|..+..+++| .|++++|.+++.
T Consensus 460 ~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~ 538 (606)
T 3t6q_A 460 HFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISII 538 (606)
T ss_dssp BCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCC
T ss_pred CCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCccccc
Confidence 2211 00 0014555556666665555555555555666666666666655555555555555 566666666555
Q ss_pred CC-CCCCCCCCCEEEcccCcCcccCCCCccccccCccccCCCCCCCCCCCCCCCCCCCCcCCCC
Q 039997 205 IP-QLTELHSLSKFDVSYNNLSCPIPDKEQFSTFDESSYRGNLNLCCPPINKSCTNLPELLETS 267 (333)
Q Consensus 205 ~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~l~~~~~~~n~~~c~~~~~~~c~~~~~~~~~~ 267 (333)
.+ .+..+++|+.+++++|++.|.|+..+...|+.... ..-.......|..|+...+..
T Consensus 539 ~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~w~~~~~-----~~~~~~~~~~C~~p~~~~g~~ 597 (606)
T 3t6q_A 539 LPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWYKENM-----QKLEDTEDTLCENPPLLRGVR 597 (606)
T ss_dssp CGGGHHHHHTSSEEECTTCCEECSGGGHHHHHHHHHCG-----GGEECGGGCBEEESGGGTTCB
T ss_pred CHhhcccCCCCCEEeCCCCCccccCCcHHHHHHHHhCc-----ccccCCCCCeeCCchHhCCCe
Confidence 55 45555556666666666666554433222222110 000112346677776665553
No 36
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=1.1e-22 Score=176.55 Aligned_cols=197 Identities=21% Similarity=0.247 Sum_probs=159.2
Q ss_pred cEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCC--hhhhccccccccCCc
Q 039997 5 EILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIP--SCITNLLFWKVGNGD 82 (333)
Q Consensus 5 ~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p--~~l~~L~~L~~~~n~ 82 (333)
..++++++.+.+. .....+++|+.|++++|.++.+ ..+..+++|+.|++++|.+++ ++ ..+.+|+.|++.+|.
T Consensus 22 ~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~L~~n~ 96 (272)
T 3rfs_A 22 IKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHD-ISALKELTNLTYLILTGNQ 96 (272)
T ss_dssp HHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCC-CGGGTTCTTCCEEECTTSC
T ss_pred HHHHhcCcccccc--cccccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCC-chhhcCCCCCCEEECCCCc
Confidence 3456667777643 4567789999999999999843 358899999999999999985 33 133456677777776
Q ss_pred cccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCcccc
Q 039997 83 LYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIG 162 (333)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 162 (333)
+.++..... . .+++|++|++++|++++..+..|.
T Consensus 97 l~~~~~~~~--------------------------------------------~--~l~~L~~L~L~~n~l~~~~~~~~~ 130 (272)
T 3rfs_A 97 LQSLPNGVF--------------------------------------------D--KLTNLKELVLVENQLQSLPDGVFD 130 (272)
T ss_dssp CCCCCTTTT--------------------------------------------T--TCTTCCEEECTTSCCCCCCTTTTT
T ss_pred cCccChhHh--------------------------------------------c--CCcCCCEEECCCCcCCccCHHHhc
Confidence 655321100 0 057899999999999988888899
Q ss_pred CccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEcccCcCcccCCCC-ccccccCcc
Q 039997 163 DLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPIPDK-EQFSTFDES 240 (333)
Q Consensus 163 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~-~~~~~l~~~ 240 (333)
.+++|+.|++++|++++..+..++.+++|+.|++++|++++..+ .+..+++|+.|++++|.+++..+.. ..+..++.+
T Consensus 131 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 210 (272)
T 3rfs_A 131 KLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYI 210 (272)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred cCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEE
Confidence 99999999999999998888889999999999999999998888 7899999999999999999876653 467788889
Q ss_pred ccCCCCCCCCCC
Q 039997 241 SYRGNLNLCCPP 252 (333)
Q Consensus 241 ~~~~n~~~c~~~ 252 (333)
++.+|++.|..|
T Consensus 211 ~l~~N~~~~~~~ 222 (272)
T 3rfs_A 211 WLHDNPWDCTCP 222 (272)
T ss_dssp ECCSSCBCCCTT
T ss_pred EccCCCccccCc
Confidence 999999888644
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=2.9e-23 Score=199.55 Aligned_cols=245 Identities=18% Similarity=0.179 Sum_probs=179.8
Q ss_pred CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChh---hhccccccc
Q 039997 2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSC---ITNLLFWKV 78 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~---l~~L~~L~~ 78 (333)
++|++|+|++|.|++..|..|.++++|++|+|++|.++++.|..|.++++|++|+|++|.++...+.. +.+|+.|++
T Consensus 75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 154 (597)
T 3oja_B 75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM 154 (597)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEe
Confidence 57999999999999888889999999999999999999999999999999999999999999555444 356678888
Q ss_pred cCCccccccccCC--CCcccccccccCCCCCc-----------CCCCCCCCc--cccceEEEEeeccccccchhhhhccc
Q 039997 79 GNGDLYGLVERGR--DFDLEDIYNYYNSTVPL-----------SLDRSDTRT--LDTQVVVNFMTKNRYESYKGVILEYM 143 (333)
Q Consensus 79 ~~n~~~~~~~~~~--~~~~~~~~~~~~~~~~~-----------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~L 143 (333)
++|.+.++..... ...+.......+..... .++...+.. .........+..+.+..+++....+|
T Consensus 155 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L 234 (597)
T 3oja_B 155 SNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVEL 234 (597)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCC
T ss_pred eCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCC
Confidence 8888877543211 11111111111111111 111111110 01112223334444555555556789
Q ss_pred cEEECCCCcccccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEEEcccCc
Q 039997 144 AGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNN 223 (333)
Q Consensus 144 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~ 223 (333)
+.|++++|.+++ +..+..+++|+.|+|++|.+++..|..|..+++|+.|++++|.+++++..+..+++|+.|++++|.
T Consensus 235 ~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~ 312 (597)
T 3oja_B 235 TILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH 312 (597)
T ss_dssp CEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSC
T ss_pred CEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCC
Confidence 999999999986 467889999999999999999988999999999999999999999876677889999999999999
Q ss_pred CcccCCCCccccccCccccCCCCCC
Q 039997 224 LSCPIPDKEQFSTFDESSYRGNLNL 248 (333)
Q Consensus 224 l~~~~~~~~~~~~l~~~~~~~n~~~ 248 (333)
++...+....+..+..+++.+|...
T Consensus 313 l~~i~~~~~~l~~L~~L~L~~N~l~ 337 (597)
T 3oja_B 313 LLHVERNQPQFDRLENLYLDHNSIV 337 (597)
T ss_dssp CCCCGGGHHHHTTCSEEECCSSCCC
T ss_pred CCccCcccccCCCCCEEECCCCCCC
Confidence 9865444456677888888887654
No 38
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=5.1e-24 Score=199.69 Aligned_cols=215 Identities=20% Similarity=0.188 Sum_probs=170.1
Q ss_pred CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhccccccccCC
Q 039997 2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGNG 81 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~~L~~~~n 81 (333)
++|++|+|++|.|++..|..|.++++|++|+|++|.+++..| |..+++|++|++++|.+++..+ ..+|+.|++++|
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~--~~~L~~L~L~~N 109 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV--GPSIETLHAANN 109 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE--CTTCCEEECCSS
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC--CCCcCEEECcCC
Confidence 489999999999998888899999999999999999987766 8999999999999999985432 278889999999
Q ss_pred ccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchh---hhhccccEEECCCCcccccCC
Q 039997 82 DLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKG---VILEYMAGLDLSSNELTGDIS 158 (333)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~L~~L~Ls~n~l~~~~~ 158 (333)
.+.++..... .. +....+..+.+....+ ..+++|+.|+|++|.+++..|
T Consensus 110 ~l~~~~~~~l-----------~~-----------------L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 161 (487)
T 3oja_A 110 NISRVSCSRG-----------QG-----------------KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161 (487)
T ss_dssp CCCCEEECCC-----------SS-----------------CEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEG
T ss_pred cCCCCCcccc-----------CC-----------------CCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcCh
Confidence 8877543210 01 1111222222222211 116789999999999998888
Q ss_pred cccc-CccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEEEcccCcCcccCCCCcccccc
Q 039997 159 SEIG-DLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCPIPDKEQFSTF 237 (333)
Q Consensus 159 ~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~l 237 (333)
..+. .+++|+.|+|++|.+++..+ ...+++|+.|++++|.++++++.+..+++|+.|++++|.+++.++....+..+
T Consensus 162 ~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L 239 (487)
T 3oja_A 162 AELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNL 239 (487)
T ss_dssp GGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTC
T ss_pred HHHhhhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCC
Confidence 7776 78999999999999996643 33589999999999999988778888999999999999999766555566778
Q ss_pred CccccCCCCCCCC
Q 039997 238 DESSYRGNLNLCC 250 (333)
Q Consensus 238 ~~~~~~~n~~~c~ 250 (333)
..+++.+|+..|+
T Consensus 240 ~~L~l~~N~l~c~ 252 (487)
T 3oja_A 240 EHFDLRGNGFHCG 252 (487)
T ss_dssp CEEECTTCCBCHH
T ss_pred CEEEcCCCCCcCc
Confidence 8888999998874
No 39
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.90 E-value=1.9e-23 Score=203.76 Aligned_cols=251 Identities=19% Similarity=0.187 Sum_probs=161.5
Q ss_pred CcccEEECCCCcCCCCCC-ccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCC--CCCChhh---hcccc
Q 039997 2 SALEILDLRDNYFSGRIP-YGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLN--GSIPSCI---TNLLF 75 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~~~~-~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~--~~~p~~l---~~L~~ 75 (333)
++|++|+|++|.+++.+| ..|.++++|++|++++|++.++.+..|..+++|+.|++++|.+. +..|..+ .+|+.
T Consensus 405 ~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~ 484 (680)
T 1ziw_A 405 GHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTI 484 (680)
T ss_dssp TTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCE
T ss_pred CCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCE
Confidence 578999999999986555 68899999999999999999888889999999999999999876 3456555 45567
Q ss_pred ccccCCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccc
Q 039997 76 WKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTG 155 (333)
Q Consensus 76 L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 155 (333)
|++++|.+..+....... ......+.++...+....... ........+.+ +++|+.|++++|+++.
T Consensus 485 L~Ls~N~l~~i~~~~~~~--------l~~L~~L~Ls~N~l~~~~~~~----~~~~~~~~~~~--l~~L~~L~L~~N~l~~ 550 (680)
T 1ziw_A 485 LDLSNNNIANINDDMLEG--------LEKLEILDLQHNNLARLWKHA----NPGGPIYFLKG--LSHLHILNLESNGFDE 550 (680)
T ss_dssp EECCSSCCCCCCTTTTTT--------CTTCCEEECCSSCCGGGGSTT----STTSCCCTTTT--CTTCCEEECCSSCCCC
T ss_pred EECCCCCCCcCChhhhcc--------ccccCEEeCCCCCccccchhh----ccCCcchhhcC--CCCCCEEECCCCCCCC
Confidence 777777776644321110 001111111111111100000 00000001111 6789999999999997
Q ss_pred cCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCC-CCCCCCEEEcccCcCcccCCC-Cc
Q 039997 156 DISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLT-ELHSLSKFDVSYNNLSCPIPD-KE 232 (333)
Q Consensus 156 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~-~l~~L~~L~l~~N~l~~~~~~-~~ 232 (333)
+++..|.++++|+.|+|++|+++++++..|..+++|+.|++++|+++++.+ .+. .+++|+.+++++|++.|.|+. .+
T Consensus 551 i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~ 630 (680)
T 1ziw_A 551 IPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAW 630 (680)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCCCSS
T ss_pred CCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCccHHH
Confidence 777889999999999999999998888889999999999999999999888 666 688999999999999999986 33
Q ss_pred cccccCccccCCCCCCCCCCCCCCCCCCCCcCCCCCCC
Q 039997 233 QFSTFDESSYRGNLNLCCPPINKSCTNLPELLETSSKG 270 (333)
Q Consensus 233 ~~~~l~~~~~~~n~~~c~~~~~~~c~~~~~~~~~~~~~ 270 (333)
...|+.... ...-+....+.|..|+...+.....
T Consensus 631 ~~~~~~~~~----~~~~~~~~~~~C~~p~~~~g~~l~~ 664 (680)
T 1ziw_A 631 FVNWINETH----TNIPELSSHYLCNTPPHYHGFPVRL 664 (680)
T ss_dssp EECCSSCC------------------------------
T ss_pred HHHHHHhcC----cccccccCCcEECCchHHCCCcccc
Confidence 333332211 1111123456788777766654433
No 40
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.90 E-value=9.4e-24 Score=179.63 Aligned_cols=193 Identities=17% Similarity=0.165 Sum_probs=156.2
Q ss_pred CcccEEECCCCcCCCCCCccccCCcccceeeccccc-cccccchhhcCCCCCCEEeCCC-CcCCCCCChhhh---ccccc
Q 039997 2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNY-LQGPIPHQLCQLRKLSIMDLSH-NRLNGSIPSCIT---NLLFW 76 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~f~~L~~L~~LdLs~-N~l~~~~p~~l~---~L~~L 76 (333)
++|++|++++|.|+++.+..|.++++|++|++++|+ ++.+.+.+|.++++|++|++++ |+++...+..|. +|+.|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 579999999999998777799999999999999997 9988888999999999999998 999866655554 55666
Q ss_pred cccCCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhcccc---EEECCCC-c
Q 039997 77 KVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMA---GLDLSSN-E 152 (333)
Q Consensus 77 ~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~---~L~Ls~n-~ 152 (333)
++.+|.+.+++. ... +.+|+ .|++++| +
T Consensus 111 ~l~~n~l~~lp~-~~~-----------------------------------------------l~~L~~L~~L~l~~N~~ 142 (239)
T 2xwt_C 111 GIFNTGLKMFPD-LTK-----------------------------------------------VYSTDIFFILEITDNPY 142 (239)
T ss_dssp EEEEECCCSCCC-CTT-----------------------------------------------CCBCCSEEEEEEESCTT
T ss_pred eCCCCCCccccc-ccc-----------------------------------------------ccccccccEEECCCCcc
Confidence 777776655332 000 34455 9999999 9
Q ss_pred ccccCCccccCccccc-eeecccccCCCCchHHHhCCCCCCEEeccCCc-ccCCCC-CCCCC-CCCCEEEcccCcCcccC
Q 039997 153 LTGDISSEIGDLRNIH-GLNLSHNFLSGSIPESFSNLKMIESLDLSHNK-LNGQIP-QLTEL-HSLSKFDVSYNNLSCPI 228 (333)
Q Consensus 153 l~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~-~~~~l-~~L~~L~l~~N~l~~~~ 228 (333)
++++.+..|.++++|+ .|++++|+++.+.+..|.. ++|+.|++++|+ ++.+.+ .+..+ ++|+.|++++|+++...
T Consensus 143 l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~ 221 (239)
T 2xwt_C 143 MTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALP 221 (239)
T ss_dssp CCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCC
T ss_pred hhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCC
Confidence 9988888899999999 9999999999666666666 889999999995 988877 78888 99999999999998654
Q ss_pred CCCccccccCccccCCC
Q 039997 229 PDKEQFSTFDESSYRGN 245 (333)
Q Consensus 229 ~~~~~~~~l~~~~~~~n 245 (333)
+. .+..++.+.+.++
T Consensus 222 ~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 222 SK--GLEHLKELIARNT 236 (239)
T ss_dssp CT--TCTTCSEEECTTC
T ss_pred hh--HhccCceeeccCc
Confidence 33 5666666655544
No 41
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.89 E-value=1.3e-22 Score=180.79 Aligned_cols=192 Identities=17% Similarity=0.218 Sum_probs=155.7
Q ss_pred CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhc---------
Q 039997 2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITN--------- 72 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~--------- 72 (333)
++|++|+|++|.++ .+|..+.++++|++|+|++|+++ ..|..|..+++|++|++++|++.+.+|..+..
T Consensus 104 ~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~ 181 (328)
T 4fcg_A 104 SHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQG 181 (328)
T ss_dssp TTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEE
T ss_pred CCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhcc
Confidence 57999999999999 88999999999999999999999 66888999999999999999888888876644
Q ss_pred cccccccCCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhh--hccccEEECCC
Q 039997 73 LLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVI--LEYMAGLDLSS 150 (333)
Q Consensus 73 L~~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~L~~L~Ls~ 150 (333)
++.|+ ...+..+.+..++... +++|+.|++++
T Consensus 182 l~~L~----------------------------------------------~L~L~~n~l~~lp~~l~~l~~L~~L~L~~ 215 (328)
T 4fcg_A 182 LVNLQ----------------------------------------------SLRLEWTGIRSLPASIANLQNLKSLKIRN 215 (328)
T ss_dssp STTCC----------------------------------------------EEEEEEECCCCCCGGGGGCTTCCEEEEES
T ss_pred CCCCC----------------------------------------------EEECcCCCcCcchHhhcCCCCCCEEEccC
Confidence 22221 1112222333333222 67899999999
Q ss_pred CcccccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEcccCcCcccCC
Q 039997 151 NELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPIP 229 (333)
Q Consensus 151 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~ 229 (333)
|++++ .|..+..+++|+.|++++|.+.+..|..++.+++|+.|++++|.+.+..| .+..+++|+.|++++|++.+..|
T Consensus 216 N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP 294 (328)
T 4fcg_A 216 SPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294 (328)
T ss_dssp SCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCC
T ss_pred CCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhcc
Confidence 99995 55579999999999999999999999999999999999999999988888 89999999999999999988877
Q ss_pred CC-ccccccCcccc
Q 039997 230 DK-EQFSTFDESSY 242 (333)
Q Consensus 230 ~~-~~~~~l~~~~~ 242 (333)
.. ..+..+....+
T Consensus 295 ~~l~~L~~L~~l~l 308 (328)
T 4fcg_A 295 SLIAQLPANCIILV 308 (328)
T ss_dssp GGGGGSCTTCEEEC
T ss_pred HHHhhccCceEEeC
Confidence 53 23333433333
No 42
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.89 E-value=9.5e-24 Score=187.22 Aligned_cols=215 Identities=20% Similarity=0.172 Sum_probs=127.9
Q ss_pred CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhccccccccCC
Q 039997 2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGNG 81 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~~L~~~~n 81 (333)
++|++|||++|.|++..|..|.++++|++|+|++|++++..+ |..+++|++|++++|++++. + ...+++.|++.+|
T Consensus 34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l-~-~~~~L~~L~l~~n 109 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-L-VGPSIETLHAANN 109 (317)
T ss_dssp GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEE-E-ECTTCCEEECCSS
T ss_pred CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccc-c-CCCCcCEEECCCC
Confidence 478999999999998777899999999999999999986665 89999999999999998843 2 2367888888888
Q ss_pred ccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhh----hhccccEEECCCCcccccC
Q 039997 82 DLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGV----ILEYMAGLDLSSNELTGDI 157 (333)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~~L~~L~Ls~n~l~~~~ 157 (333)
.+..+..... ..+.......+... .+....+.. ........+..+.+...... .+++|++|++++|.+++..
T Consensus 110 ~l~~~~~~~~-~~L~~L~l~~N~l~--~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 185 (317)
T 3o53_A 110 NISRVSCSRG-QGKKNIYLANNKIT--MLRDLDEGC-RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK 185 (317)
T ss_dssp CCSEEEECCC-SSCEEEECCSSCCC--SGGGBCTGG-GSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE
T ss_pred ccCCcCcccc-CCCCEEECCCCCCC--Cccchhhhc-cCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccc
Confidence 8876543221 11111111111100 000001111 11122223333333222111 1355666666666666442
Q ss_pred CccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEEEcccCcCccc
Q 039997 158 SSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCP 227 (333)
Q Consensus 158 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~ 227 (333)
+. ..+++|+.|+|++|++++.++ .+..+++|+.|++++|.++.+++.+..+++|+.|++++|++.|.
T Consensus 186 ~~--~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~ 252 (317)
T 3o53_A 186 GQ--VVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCG 252 (317)
T ss_dssp CC--CCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHH
T ss_pred cc--cccccCCEEECCCCcCCcchh-hhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCc
Confidence 22 235666666666666664333 35666666666666666665444556666666666666666644
No 43
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.89 E-value=8.8e-23 Score=178.19 Aligned_cols=220 Identities=19% Similarity=0.175 Sum_probs=166.1
Q ss_pred cEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhh---ccccccccCC
Q 039997 5 EILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCIT---NLLFWKVGNG 81 (333)
Q Consensus 5 ~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~---~L~~L~~~~n 81 (333)
++++.+++.++ .+|..+. ++|++|++++|.++++.++.|..+++|++|++++|.+++..|..+. +|+.|++.+|
T Consensus 14 ~~~~c~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcc-cCCcCCC--CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 57999999998 5676553 7999999999999988889999999999999999999977676664 4566777777
Q ss_pred c-cccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchh---hhhccccEEECCCCcccccC
Q 039997 82 D-LYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKG---VILEYMAGLDLSSNELTGDI 157 (333)
Q Consensus 82 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~L~~L~Ls~n~l~~~~ 157 (333)
. +..+...... .......+. +..+.+..... ..+++|++|++++|++++..
T Consensus 91 ~~l~~~~~~~~~--------~l~~L~~L~-----------------l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 145 (285)
T 1ozn_A 91 AQLRSVDPATFH--------GLGRLHTLH-----------------LDRCGLQELGPGLFRGLAALQYLYLQDNALQALP 145 (285)
T ss_dssp TTCCCCCTTTTT--------TCTTCCEEE-----------------CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCccccCHHHhc--------CCcCCCEEE-----------------CCCCcCCEECHhHhhCCcCCCEEECCCCcccccC
Confidence 5 4443111100 000111111 11111111111 01678999999999999888
Q ss_pred CccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEcccCcCcccCCC-Ccccc
Q 039997 158 SSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPIPD-KEQFS 235 (333)
Q Consensus 158 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~-~~~~~ 235 (333)
+..|.++++|+.|++++|++++..+..|..+++|+.|++++|.+++..+ .+..+++|+.|++++|.++...+. ...+.
T Consensus 146 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 225 (285)
T 1ozn_A 146 DDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLR 225 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCT
T ss_pred HhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCc
Confidence 8889999999999999999997777789999999999999999998877 889999999999999999875433 23566
Q ss_pred ccCccccCCCCCCCCCC
Q 039997 236 TFDESSYRGNLNLCCPP 252 (333)
Q Consensus 236 ~l~~~~~~~n~~~c~~~ 252 (333)
.++.+++.+|++.|+.+
T Consensus 226 ~L~~L~l~~N~~~c~~~ 242 (285)
T 1ozn_A 226 ALQYLRLNDNPWVCDCR 242 (285)
T ss_dssp TCCEEECCSSCEECSGG
T ss_pred ccCEEeccCCCccCCCC
Confidence 77888899999988543
No 44
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.89 E-value=2.9e-22 Score=186.26 Aligned_cols=241 Identities=18% Similarity=0.160 Sum_probs=177.9
Q ss_pred ccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhh---hccccccccC
Q 039997 4 LEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCI---TNLLFWKVGN 80 (333)
Q Consensus 4 L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l---~~L~~L~~~~ 80 (333)
.+.++.+++.++ .+|..+. +++++|+|++|+|+++.+..|.++++|+.|+|++|++++..|..| .+|+.|++.+
T Consensus 56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 467899999998 5777665 689999999999999999999999999999999999997766665 4666788888
Q ss_pred CccccccccCCC--CcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhh---hhccccEEECCCCcccc
Q 039997 81 GDLYGLVERGRD--FDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGV---ILEYMAGLDLSSNELTG 155 (333)
Q Consensus 81 n~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~L~~L~Ls~n~l~~ 155 (333)
|.+..+...... ..+.......+... .+....+..+.....+.....+....++.. .+++|+.|++++|++++
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~--~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~ 210 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIE--SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD 210 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCC--EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcc--eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc
Confidence 888765543211 11111111111111 111212222222222222222222222211 16889999999999996
Q ss_pred cCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEcccCcCcccCCCC-cc
Q 039997 156 DISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPIPDK-EQ 233 (333)
Q Consensus 156 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~-~~ 233 (333)
. | .+..+++|+.|+|++|.+++..|..|..+++|+.|++++|.+++..+ .+..+++|+.|++++|.++...+.. ..
T Consensus 211 ~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 288 (452)
T 3zyi_A 211 M-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTP 288 (452)
T ss_dssp C-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTT
T ss_pred c-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcc
Confidence 5 3 47889999999999999999889999999999999999999999888 8999999999999999998665543 35
Q ss_pred ccccCccccCCCCCCCCC
Q 039997 234 FSTFDESSYRGNLNLCCP 251 (333)
Q Consensus 234 ~~~l~~~~~~~n~~~c~~ 251 (333)
+..++.+++.+|++.|+.
T Consensus 289 l~~L~~L~L~~Np~~CdC 306 (452)
T 3zyi_A 289 LRYLVELHLHHNPWNCDC 306 (452)
T ss_dssp CTTCCEEECCSSCEECST
T ss_pred ccCCCEEEccCCCcCCCC
Confidence 677888899999999964
No 45
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.89 E-value=2.7e-22 Score=185.87 Aligned_cols=256 Identities=20% Similarity=0.205 Sum_probs=186.2
Q ss_pred ccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhh---hccccccccC
Q 039997 4 LEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCI---TNLLFWKVGN 80 (333)
Q Consensus 4 L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l---~~L~~L~~~~ 80 (333)
.+.++.+++.++ .+|..+. ++++.|+|++|+|+.+.+..|.++++|++|+|++|+++...+..| .+|+.|++.+
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 567899999998 6787766 789999999999999999999999999999999999997666665 4566788888
Q ss_pred CccccccccCCC--CcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhh---hhccccEEECCCCcccc
Q 039997 81 GDLYGLVERGRD--FDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGV---ILEYMAGLDLSSNELTG 155 (333)
Q Consensus 81 n~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~L~~L~Ls~n~l~~ 155 (333)
|.+..+...... ..+.......+... .+....+..+.....+.....+....++.. .+++|+.|++++|+++.
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~--~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~ 199 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIE--SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE 199 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCC--EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS
T ss_pred CcCCeeCHhHhhccccCceeeCCCCccc--ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc
Confidence 888776542111 11111111111111 111112222222222222221222222211 17889999999999995
Q ss_pred cCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEcccCcCcccCCCC-cc
Q 039997 156 DISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPIPDK-EQ 233 (333)
Q Consensus 156 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~-~~ 233 (333)
+ | .+..+++|+.|+|++|++++..+..|..+++|+.|++++|.++++.+ .+..+++|+.|++++|.++...+.. ..
T Consensus 200 ~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 277 (440)
T 3zyj_A 200 I-P-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTP 277 (440)
T ss_dssp C-C-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSS
T ss_pred c-c-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcc
Confidence 4 3 47889999999999999998889999999999999999999999888 8999999999999999999766544 45
Q ss_pred ccccCccccCCCCCCCCCC-----------------CCCCCCCCCCcCCC
Q 039997 234 FSTFDESSYRGNLNLCCPP-----------------INKSCTNLPELLET 266 (333)
Q Consensus 234 ~~~l~~~~~~~n~~~c~~~-----------------~~~~c~~~~~~~~~ 266 (333)
+..++.+++.+|++.|+.. ....|..|+...+.
T Consensus 278 l~~L~~L~L~~Np~~CdC~l~~l~~~~~~~~~~~~~~~~~C~~P~~l~g~ 327 (440)
T 3zyj_A 278 LHHLERIHLHHNPWNCNCDILWLSWWIKDMAPSNTACCARCNTPPNLKGR 327 (440)
T ss_dssp CTTCCEEECCSSCEECSSTTHHHHHHHHTTSCSSCSCCCBEEESTTTTTC
T ss_pred ccCCCEEEcCCCCccCCCCchHHHHHHHhccccCCccccCCCChhHhcCc
Confidence 6778888999999999531 12457777666554
No 46
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.89 E-value=8.8e-24 Score=190.22 Aligned_cols=229 Identities=18% Similarity=0.166 Sum_probs=141.2
Q ss_pred CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCC-hh---hhcccccc
Q 039997 2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIP-SC---ITNLLFWK 77 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p-~~---l~~L~~L~ 77 (333)
++|++|+|++|.|++..|..|.++++|++|++++|+++++.+..|.++++|++|++++|+++...+ .. +.+|+.|+
T Consensus 76 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~ 155 (353)
T 2z80_A 76 VNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILR 155 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEE
T ss_pred CCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEE
Confidence 689999999999998888899999999999999999998888889999999999999999984433 23 45666777
Q ss_pred ccCCc-ccccccc-CC-CCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhh---hccccEEECCCC
Q 039997 78 VGNGD-LYGLVER-GR-DFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVI---LEYMAGLDLSSN 151 (333)
Q Consensus 78 ~~~n~-~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~L~~L~Ls~n 151 (333)
+.+|. +..+... .. ...+.......+.... .....+.... ......+..+.....+... +++|+.|++++|
T Consensus 156 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n 232 (353)
T 2z80_A 156 VGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS--YEPKSLKSIQ-NVSHLILHMKQHILLLEIFVDVTSSVECLELRDT 232 (353)
T ss_dssp EEESSSCCEECTTTTTTCCEEEEEEEEETTCCE--ECTTTTTTCS-EEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESC
T ss_pred CCCCccccccCHHHccCCCCCCEEECCCCCcCc--cCHHHHhccc-cCCeecCCCCccccchhhhhhhcccccEEECCCC
Confidence 77763 4333211 10 0011111111111100 0001111111 1122222333332222211 345555555555
Q ss_pred cccccCCcccc---CccccceeecccccCCC----CchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEcccCc
Q 039997 152 ELTGDISSEIG---DLRNIHGLNLSHNFLSG----SIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNN 223 (333)
Q Consensus 152 ~l~~~~~~~~~---~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~~N~ 223 (333)
++++..+..+. ....++.++++++.+++ ..|..+..+++|+.|++++|+++.+++ .+..+++|+.|++++|+
T Consensus 233 ~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 233 DLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp BCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCC
Confidence 55544333222 23344555555554443 245678888899999999999987766 46888999999999999
Q ss_pred CcccCCCCcc
Q 039997 224 LSCPIPDKEQ 233 (333)
Q Consensus 224 l~~~~~~~~~ 233 (333)
+.|.|+....
T Consensus 313 ~~~~~~~l~~ 322 (353)
T 2z80_A 313 WDCSCPRIDY 322 (353)
T ss_dssp BCCCHHHHHH
T ss_pred ccCcCCCcHH
Confidence 9998875443
No 47
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.89 E-value=1.4e-23 Score=189.58 Aligned_cols=177 Identities=25% Similarity=0.235 Sum_probs=124.0
Q ss_pred cEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhc-CCCCCCEEeCCCCcCCCCCChhhh---ccccccccC
Q 039997 5 EILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLC-QLRKLSIMDLSHNRLNGSIPSCIT---NLLFWKVGN 80 (333)
Q Consensus 5 ~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~-~L~~L~~LdLs~N~l~~~~p~~l~---~L~~L~~~~ 80 (333)
++++++++.++ .+|..+. +.++.|+|++|+|+++.+..|. ++++|+.|+|++|+|+...+..|. +|+.|++++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 35666666666 3554443 3466666666666666666665 666666666666666644444343 334444445
Q ss_pred CccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCcc
Q 039997 81 GDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSE 160 (333)
Q Consensus 81 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 160 (333)
|.+..+.... +.+ +.+|+.|+|++|+++++.+..
T Consensus 98 N~l~~~~~~~--------------------------------------------~~~--l~~L~~L~L~~N~i~~~~~~~ 131 (361)
T 2xot_A 98 NHLHTLDEFL--------------------------------------------FSD--LQALEVLLLYNNHIVVVDRNA 131 (361)
T ss_dssp SCCCEECTTT--------------------------------------------TTT--CTTCCEEECCSSCCCEECTTT
T ss_pred CcCCcCCHHH--------------------------------------------hCC--CcCCCEEECCCCcccEECHHH
Confidence 4443321100 000 577999999999999998999
Q ss_pred ccCccccceeecccccCCCCchHHH---hCCCCCCEEeccCCcccCCCC-CCCCCCC--CCEEEcccCcCcccCCC
Q 039997 161 IGDLRNIHGLNLSHNFLSGSIPESF---SNLKMIESLDLSHNKLNGQIP-QLTELHS--LSKFDVSYNNLSCPIPD 230 (333)
Q Consensus 161 ~~~l~~L~~L~Ls~N~l~~~~~~~~---~~l~~L~~L~L~~N~l~~~~~-~~~~l~~--L~~L~l~~N~l~~~~~~ 230 (333)
|.++++|+.|+|++|+|+++++..| ..+++|+.|+|++|+++.+++ .+..++. ++.|++++|++.|.|..
T Consensus 132 ~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~l 207 (361)
T 2xot_A 132 FEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCKL 207 (361)
T ss_dssp TTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHHH
T ss_pred hCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCcCc
Confidence 9999999999999999998777776 578999999999999998776 6777776 48899999999999854
No 48
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.89 E-value=1e-23 Score=186.65 Aligned_cols=200 Identities=21% Similarity=0.212 Sum_probs=103.0
Q ss_pred CcccEEECCCCcCCCCCCccc--cCCcccceeeccccccccccchhhcCC-----CCCCEEeCCCCcCCCCCChhhh---
Q 039997 2 SALEILDLRDNYFSGRIPYGI--NEHSNLRALLLKGNYLQGPIPHQLCQL-----RKLSIMDLSHNRLNGSIPSCIT--- 71 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~~~~~~~--~~l~~L~~L~L~~N~i~~~~~~~f~~L-----~~L~~LdLs~N~l~~~~p~~l~--- 71 (333)
++|++|+|++|.+++..|..+ .++++|++|++++|++++. |..|..+ ++|++|++++|++++..|..+.
T Consensus 95 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~ 173 (312)
T 1wwl_A 95 SGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP 173 (312)
T ss_dssp SCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS
T ss_pred CCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC
Confidence 356677777777766666654 6667777777777777655 5556655 6777777777776655544443
Q ss_pred ccccccccCCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCC
Q 039997 72 NLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSN 151 (333)
Q Consensus 72 ~L~~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n 151 (333)
+|+.|++++|.+.+...... .+....+++|++|++++|
T Consensus 174 ~L~~L~Ls~N~l~~~~~~~~------------------------------------------~~~~~~l~~L~~L~L~~N 211 (312)
T 1wwl_A 174 ALSTLDLSDNPELGERGLIS------------------------------------------ALCPLKFPTLQVLALRNA 211 (312)
T ss_dssp SCCEEECCSCTTCHHHHHHH------------------------------------------HSCTTSCTTCCEEECTTS
T ss_pred CCCEEECCCCCcCcchHHHH------------------------------------------HHHhccCCCCCEEECCCC
Confidence 33344444444332100000 000000344555555555
Q ss_pred cccc---cCCccccCccccceeecccccCCCCch-HHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEEEcccCcCccc
Q 039997 152 ELTG---DISSEIGDLRNIHGLNLSHNFLSGSIP-ESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCP 227 (333)
Q Consensus 152 ~l~~---~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~ 227 (333)
++++ .....+.++++|+.|++++|++++..| ..+..+++|+.|++++|.++.++..+. ++|+.|++++|.+++.
T Consensus 212 ~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~ 289 (312)
T 1wwl_A 212 GMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRN 289 (312)
T ss_dssp CCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSC
T ss_pred cCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCCCCCC
Confidence 5552 122333445555555555555554432 234445555555555555554333332 4555555555555544
Q ss_pred CCCCccccccCccccCCCCC
Q 039997 228 IPDKEQFSTFDESSYRGNLN 247 (333)
Q Consensus 228 ~~~~~~~~~l~~~~~~~n~~ 247 (333)
|....+..++.+++.+|+.
T Consensus 290 -p~~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 290 -PSPDELPQVGNLSLKGNPF 308 (312)
T ss_dssp -CCTTTSCEEEEEECTTCTT
T ss_pred -hhHhhCCCCCEEeccCCCC
Confidence 3333444445555555543
No 49
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.88 E-value=5.8e-23 Score=197.76 Aligned_cols=227 Identities=22% Similarity=0.178 Sum_probs=171.8
Q ss_pred CcccEEECCCCcCCCCCCccccCCcccceeecccccccccc--chhhcCCCCCCEEeCCCCcCCCCCChh---hhccccc
Q 039997 2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPI--PHQLCQLRKLSIMDLSHNRLNGSIPSC---ITNLLFW 76 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~--~~~f~~L~~L~~LdLs~N~l~~~~p~~---l~~L~~L 76 (333)
++|++|++++|...+.. .+..+++|++|++++|++++.. |..+..+++|++|++++|.+++ +|.. +.+|+.|
T Consensus 328 ~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L 404 (606)
T 3vq2_A 328 PFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHL 404 (606)
T ss_dssp SSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEE
T ss_pred CccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCee
Confidence 68999999999665333 6789999999999999998763 8899999999999999999874 4444 4566677
Q ss_pred cccCCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccc-
Q 039997 77 KVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTG- 155 (333)
Q Consensus 77 ~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~- 155 (333)
++.+|.+.+........... ....+.++.+.... .....+.+ +++|++|++++|.+++
T Consensus 405 ~l~~n~l~~~~~~~~~~~l~-------~L~~L~l~~n~l~~------------~~~~~~~~--l~~L~~L~l~~n~l~~~ 463 (606)
T 3vq2_A 405 DFQHSTLKRVTEFSAFLSLE-------KLLYLDISYTNTKI------------DFDGIFLG--LTSLNTLKMAGNSFKDN 463 (606)
T ss_dssp ECTTSEEESTTTTTTTTTCT-------TCCEEECTTSCCEE------------CCTTTTTT--CTTCCEEECTTCEEGGG
T ss_pred ECCCCccCCccChhhhhccc-------cCCEEECcCCCCCc------------cchhhhcC--CCCCCEEECCCCcCCCc
Confidence 78888776643211111011 11111111111100 00001111 6789999999999997
Q ss_pred cCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEcccCcCcccCCCCccc
Q 039997 156 DISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPIPDKEQF 234 (333)
Q Consensus 156 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~ 234 (333)
..|..|.++++|+.|++++|++++..|..++.+++|+.|++++|++++..| .+..+++|+.|++++|.++...+....+
T Consensus 464 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l 543 (606)
T 3vq2_A 464 TLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHF 543 (606)
T ss_dssp EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGS
T ss_pred chHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhh
Confidence 478999999999999999999998889999999999999999999999877 8999999999999999999655444445
Q ss_pred c-ccCccccCCCCCCCCCC
Q 039997 235 S-TFDESSYRGNLNLCCPP 252 (333)
Q Consensus 235 ~-~l~~~~~~~n~~~c~~~ 252 (333)
. .++.+++.+|++.|+.+
T Consensus 544 ~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 544 PKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp CTTCCEEECCSCCCCCSST
T ss_pred cccCcEEEccCCCcccCCc
Confidence 4 47888999999999654
No 50
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.88 E-value=2.6e-22 Score=195.74 Aligned_cols=228 Identities=21% Similarity=0.149 Sum_probs=174.4
Q ss_pred CcccEEECCCCcCCCCCCccccCCcccceeecccccccccc-chhhcCCCCCCEEeCCCCcCCCCCChhh---hcccccc
Q 039997 2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPI-PHQLCQLRKLSIMDLSHNRLNGSIPSCI---TNLLFWK 77 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~-~~~f~~L~~L~~LdLs~N~l~~~~p~~l---~~L~~L~ 77 (333)
++|++|++++|.+++..|..|.++++|++|++++|++++.. +..|.++++|++|++++|++....+..| .+|+.|+
T Consensus 381 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~ 460 (680)
T 1ziw_A 381 SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLM 460 (680)
T ss_dssp SCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEE
T ss_pred CcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccch
Confidence 47999999999999989999999999999999999998644 5789999999999999999986666655 4566777
Q ss_pred ccCCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhh---hhccccEEECCCCccc
Q 039997 78 VGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGV---ILEYMAGLDLSSNELT 154 (333)
Q Consensus 78 ~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~L~~L~Ls~n~l~ 154 (333)
+.+|.+..+....... ...... ....+..+.+...+.. .+++|+.|++++|+++
T Consensus 461 l~~n~l~~~~~~p~~~------~~l~~L-----------------~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~ 517 (680)
T 1ziw_A 461 LRRVALKNVDSSPSPF------QPLRNL-----------------TILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA 517 (680)
T ss_dssp CTTSCCBCTTCSSCTT------TTCTTC-----------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCG
T ss_pred hccccccccccCCccc------ccCCCC-----------------CEEECCCCCCCcCChhhhccccccCEEeCCCCCcc
Confidence 7777665421111100 000011 1111222222222111 1678999999999998
Q ss_pred ccCC--------ccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEcccCcCc
Q 039997 155 GDIS--------SEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLS 225 (333)
Q Consensus 155 ~~~~--------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~~N~l~ 225 (333)
+..+ ..|.++++|+.|+|++|+++.+++..|..+++|+.|++++|+++++++ .+..+++|+.|++++|.++
T Consensus 518 ~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~ 597 (680)
T 1ziw_A 518 RLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLIT 597 (680)
T ss_dssp GGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCC
T ss_pred ccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCC
Confidence 7533 347889999999999999998777889999999999999999999888 7889999999999999999
Q ss_pred ccCCCCc--cccccCccccCCCCCCCCCC
Q 039997 226 CPIPDKE--QFSTFDESSYRGNLNLCCPP 252 (333)
Q Consensus 226 ~~~~~~~--~~~~l~~~~~~~n~~~c~~~ 252 (333)
...+... .+..+..+++.+|++.|+.+
T Consensus 598 ~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 598 SVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp BCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred ccChhHhcccccccCEEEccCCCcccCCc
Confidence 7655432 46778889999999999654
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.88 E-value=2.7e-22 Score=176.91 Aligned_cols=240 Identities=20% Similarity=0.205 Sum_probs=172.9
Q ss_pred cEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCC--CChh---hhcccccccc
Q 039997 5 EILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGS--IPSC---ITNLLFWKVG 79 (333)
Q Consensus 5 ~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~--~p~~---l~~L~~L~~~ 79 (333)
+.++.+++.++ .+|..+. ++|++|++++|+++.+.++.|.++++|++|++++|+++.. .|.. +.+|+.|+++
T Consensus 10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 57899999998 6776655 6899999999999988888899999999999999999732 2333 4567788888
Q ss_pred CCccccccccCCC-CcccccccccCCCCCcCCCC-CCCCccccceEEEEeeccccccchhh---hhccccEEECCCCccc
Q 039997 80 NGDLYGLVERGRD-FDLEDIYNYYNSTVPLSLDR-SDTRTLDTQVVVNFMTKNRYESYKGV---ILEYMAGLDLSSNELT 154 (333)
Q Consensus 80 ~n~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~L~~L~Ls~n~l~ 154 (333)
+|.+..+...... ..+.......+... .+.. ..+.... .+....+..+........ .+++|++|++++|.++
T Consensus 87 ~n~i~~l~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 163 (306)
T 2z66_A 87 FNGVITMSSNFLGLEQLEHLDFQHSNLK--QMSEFSVFLSLR-NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 163 (306)
T ss_dssp SCSEEEEEEEEETCTTCCEEECTTSEEE--SSTTTTTTTTCT-TCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEG
T ss_pred CCccccChhhcCCCCCCCEEECCCCccc--ccccchhhhhcc-CCCEEECCCCcCCccchhhcccCcCCCEEECCCCccc
Confidence 8887765432111 11111111111110 0100 1111111 122223333333222111 1678999999999998
Q ss_pred c-cCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEcccCcCcccCCCC-
Q 039997 155 G-DISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPIPDK- 231 (333)
Q Consensus 155 ~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~- 231 (333)
+ ..|..+..+++|+.|++++|++++..|..+..+++|+.|++++|.+++..+ .+..+++|+.|++++|.+++..+..
T Consensus 164 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 243 (306)
T 2z66_A 164 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 243 (306)
T ss_dssp GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSC
T ss_pred cccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHH
Confidence 6 678899999999999999999998888899999999999999999998888 8899999999999999998876644
Q ss_pred ccc-cccCccccCCCCCCCC
Q 039997 232 EQF-STFDESSYRGNLNLCC 250 (333)
Q Consensus 232 ~~~-~~l~~~~~~~n~~~c~ 250 (333)
..+ ..++.+++.+|++.|+
T Consensus 244 ~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 244 QHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp CCCCTTCCEEECTTCCEECS
T ss_pred HhhhccCCEEEccCCCeecc
Confidence 334 4778889999998885
No 52
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.88 E-value=2.2e-21 Score=186.79 Aligned_cols=245 Identities=16% Similarity=0.121 Sum_probs=152.0
Q ss_pred CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhh---ccccccc
Q 039997 2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCIT---NLLFWKV 78 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~---~L~~L~~ 78 (333)
+++++|||++|.|++..|..|.++++|++|+|++|+++++.|++|.++++|++|++++|++++..|..|. +|+.|++
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence 5678888888888877788888888888888888888888888888888888888888888766665554 4556666
Q ss_pred cCCccccccccCC--CCcccccccccCC--------------CCCcCCCCCCCCcc--------ccceE-EEEeeccccc
Q 039997 79 GNGDLYGLVERGR--DFDLEDIYNYYNS--------------TVPLSLDRSDTRTL--------DTQVV-VNFMTKNRYE 133 (333)
Q Consensus 79 ~~n~~~~~~~~~~--~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~--------~~~~~-~~~~~~~~~~ 133 (333)
.+|.+..+..... ...+.......+. ...+.++...+... ..... ...+..+.+.
T Consensus 113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~ 192 (606)
T 3t6q_A 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA 192 (606)
T ss_dssp TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred cccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccC
Confidence 6776665422111 1111111111111 11111111111110 00000 1111111111
Q ss_pred cch------------------------------------------------------hhhhccccEEECCCCcccccCCc
Q 039997 134 SYK------------------------------------------------------GVILEYMAGLDLSSNELTGDISS 159 (333)
Q Consensus 134 ~~~------------------------------------------------------~~~l~~L~~L~Ls~n~l~~~~~~ 159 (333)
... +....+|+.|++++|.+++..+.
T Consensus 193 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~ 272 (606)
T 3t6q_A 193 GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSN 272 (606)
T ss_dssp EECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTT
T ss_pred ccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHH
Confidence 000 00011577778888888877777
Q ss_pred cccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEcccCcCcccCCCC--ccccc
Q 039997 160 EIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPIPDK--EQFST 236 (333)
Q Consensus 160 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~--~~~~~ 236 (333)
.|.++++|+.|++++|+++ ..|..+..+++|+.|++++|.+++..+ .+..+++|+.|++++|.+.+..+.. ..+..
T Consensus 273 ~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~ 351 (606)
T 3t6q_A 273 TFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLEN 351 (606)
T ss_dssp TTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTT
T ss_pred HhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCc
Confidence 7888888888888888888 455667788888888888888887766 7778888888888888877555432 34556
Q ss_pred cCccccCCCCC
Q 039997 237 FDESSYRGNLN 247 (333)
Q Consensus 237 l~~~~~~~n~~ 247 (333)
++.+++.+|..
T Consensus 352 L~~L~l~~n~l 362 (606)
T 3t6q_A 352 LRELDLSHDDI 362 (606)
T ss_dssp CCEEECCSSCC
T ss_pred CCEEECCCCcc
Confidence 66666666643
No 53
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.88 E-value=1.5e-21 Score=162.43 Aligned_cols=158 Identities=22% Similarity=0.255 Sum_probs=136.3
Q ss_pred cEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhccccccccCCccc
Q 039997 5 EILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGNGDLY 84 (333)
Q Consensus 5 ~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~~L~~~~n~~~ 84 (333)
+.++.+++.++ .+|..+. ++|++|++++|+++++.+..|..+++|++|++++|+++...+..|..
T Consensus 10 ~~v~c~~~~l~-~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------------ 74 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGIP--AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNK------------ 74 (208)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTT------------
T ss_pred CEEEecCCCcc-CCCCCCC--CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCC------------
Confidence 57889999998 5665553 68999999999999888888999999999999999998544444433
Q ss_pred cccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCccccCc
Q 039997 85 GLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDL 164 (333)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 164 (333)
+++|++|++++|++++..+..|.++
T Consensus 75 -------------------------------------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l 99 (208)
T 2o6s_A 75 -------------------------------------------------------LTSLTYLNLSTNQLQSLPNGVFDKL 99 (208)
T ss_dssp -------------------------------------------------------CTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred -------------------------------------------------------CCCcCEEECCCCcCCccCHhHhcCc
Confidence 4668899999999998888889999
Q ss_pred cccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEcccCcCcccCCCCc
Q 039997 165 RNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPIPDKE 232 (333)
Q Consensus 165 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~ 232 (333)
++|+.|++++|++++..+..|..+++|+.|++++|.++++.+ .+..+++|+.|++++|++.|.|+...
T Consensus 100 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~ 168 (208)
T 2o6s_A 100 TQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIR 168 (208)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTTTTH
T ss_pred cCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCCCCHH
Confidence 999999999999998888888999999999999999998887 68889999999999999999987654
No 54
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.87 E-value=3.5e-23 Score=183.16 Aligned_cols=177 Identities=24% Similarity=0.265 Sum_probs=144.1
Q ss_pred CcccEEECCCCcCCCCCCccccCC-----cccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCC-------CChh
Q 039997 2 SALEILDLRDNYFSGRIPYGINEH-----SNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGS-------IPSC 69 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~~~~~~~~~l-----~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~-------~p~~ 69 (333)
++|++|+|++|.+++. |..+.++ ++|++|++++|+++++.|+.|..+++|++|++++|++.+. .+..
T Consensus 121 ~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 199 (312)
T 1wwl_A 121 PDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLK 199 (312)
T ss_dssp CCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTS
T ss_pred CCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhcc
Confidence 5799999999999976 8888888 9999999999999999999999999999999999997643 1244
Q ss_pred hhccccccccCCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECC
Q 039997 70 ITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLS 149 (333)
Q Consensus 70 l~~L~~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls 149 (333)
+.+|+.|++++|.+..+....... + ..+++|+.|+++
T Consensus 200 l~~L~~L~L~~N~l~~~~~~~~~~-----------------------------------------~--~~l~~L~~L~Ls 236 (312)
T 1wwl_A 200 FPTLQVLALRNAGMETPSGVCSAL-----------------------------------------A--AARVQLQGLDLS 236 (312)
T ss_dssp CTTCCEEECTTSCCCCHHHHHHHH-----------------------------------------H--HTTCCCSEEECT
T ss_pred CCCCCEEECCCCcCcchHHHHHHH-----------------------------------------H--hcCCCCCEEECC
Confidence 567778888887776421100000 0 004789999999
Q ss_pred CCcccccCC-ccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEEEcccCcCcc
Q 039997 150 SNELTGDIS-SEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSC 226 (333)
Q Consensus 150 ~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~ 226 (333)
+|++++..| ..+..+++|+.|+|++|+++ .+|..+. ++|+.|++++|++++. |.+..+++|+.|++++|++++
T Consensus 237 ~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 237 HNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PSPDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp TSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CCTTTSCEEEEEECTTCTTTC
T ss_pred CCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hhHhhCCCCCEEeccCCCCCC
Confidence 999998775 56777899999999999999 4455444 8899999999999988 548899999999999999975
No 55
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.87 E-value=3.4e-22 Score=166.28 Aligned_cols=156 Identities=22% Similarity=0.230 Sum_probs=138.8
Q ss_pred CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhccccccccCC
Q 039997 2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGNG 81 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~~L~~~~n 81 (333)
++|++|++++|.+++..+..|.++++|++|++++|+++++.+..|..+++|++|++++|++++..+..+..
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~--------- 98 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDK--------- 98 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT---------
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcC---------
Confidence 57999999999999777778999999999999999999888888999999999999999998554444433
Q ss_pred ccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCccc
Q 039997 82 DLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEI 161 (333)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 161 (333)
+++|++|++++|++++..+..|
T Consensus 99 ----------------------------------------------------------l~~L~~L~L~~N~l~~~~~~~~ 120 (208)
T 2o6s_A 99 ----------------------------------------------------------LTQLKELALNTNQLQSLPDGVF 120 (208)
T ss_dssp ----------------------------------------------------------CTTCCEEECCSSCCCCCCTTTT
T ss_pred ----------------------------------------------------------ccCCCEEEcCCCcCcccCHhHh
Confidence 4678899999999998888889
Q ss_pred cCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEEEcccCcCcccCCC
Q 039997 162 GDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCPIPD 230 (333)
Q Consensus 162 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 230 (333)
..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+ ..+.|+.+++..|.+++..|.
T Consensus 121 ~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~------~~~~l~~L~~~~n~~~g~ip~ 183 (208)
T 2o6s_A 121 DKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC------TCPGIRYLSEWINKHSGVVRN 183 (208)
T ss_dssp TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC------CTTTTHHHHHHHHHCTTTBBC
T ss_pred ccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec------CCCCHHHHHHHHHhCCceeec
Confidence 999999999999999998888889999999999999998774 456889999999999988775
No 56
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.87 E-value=3.5e-21 Score=183.75 Aligned_cols=106 Identities=20% Similarity=0.175 Sum_probs=81.4
Q ss_pred hccccEEECCCCcccccCCccccCccccceeecccccCCCCc--hHHHhCCCCCCEEeccCCcccC-CCC-CCCCCCCCC
Q 039997 140 LEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSI--PESFSNLKMIESLDLSHNKLNG-QIP-QLTELHSLS 215 (333)
Q Consensus 140 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~L~~N~l~~-~~~-~~~~l~~L~ 215 (333)
+++|++|++++|++++..|..+.++++|+.|++++|++++.. |..+..+++|+.|++++|.+++ .++ .+..+++|+
T Consensus 352 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~ 431 (562)
T 3a79_B 352 PSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESIL 431 (562)
T ss_dssp CCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCC
T ss_pred CCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCC
Confidence 567899999999999888888999999999999999998754 4668889999999999999988 444 577778888
Q ss_pred EEEcccCcCcccCCCCccccccCccccCCCC
Q 039997 216 KFDVSYNNLSCPIPDKEQFSTFDESSYRGNL 246 (333)
Q Consensus 216 ~L~l~~N~l~~~~~~~~~~~~l~~~~~~~n~ 246 (333)
.|++++|.+++..+.... ..++.+++.+|.
T Consensus 432 ~L~l~~n~l~~~~~~~l~-~~L~~L~L~~N~ 461 (562)
T 3a79_B 432 VLNLSSNMLTGSVFRCLP-PKVKVLDLHNNR 461 (562)
T ss_dssp EEECCSSCCCGGGGSSCC-TTCSEEECCSSC
T ss_pred EEECCCCCCCcchhhhhc-CcCCEEECCCCc
Confidence 888888887654433211 345555555553
No 57
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.87 E-value=2.1e-22 Score=194.42 Aligned_cols=216 Identities=19% Similarity=0.212 Sum_probs=167.0
Q ss_pred CcccEEECCCCcCCCCCCccccCCcccceeecccccccccc-chhhcCCCCCCEEeCCCCcCCCCCChhhh---cccccc
Q 039997 2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPI-PHQLCQLRKLSIMDLSHNRLNGSIPSCIT---NLLFWK 77 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~-~~~f~~L~~L~~LdLs~N~l~~~~p~~l~---~L~~L~ 77 (333)
.+|+.++++.|.+. ..+..+.++++|+.++++.|...... +..|..+.+++.++++.|.+....+..+. .++.|+
T Consensus 397 ~~L~~L~~~~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~ 475 (635)
T 4g8a_A 397 ISLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 475 (635)
T ss_dssp SCCCEEECCSCSEE-EECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEE
T ss_pred hhhhhhhccccccc-cccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhh
Confidence 47889999999988 45677889999999999988876444 46789999999999999999876665554 445555
Q ss_pred ccCCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccC
Q 039997 78 VGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDI 157 (333)
Q Consensus 78 ~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 157 (333)
+.+|...... .+ ..+.+ +++|+.|+|++|+++++.
T Consensus 476 Ls~N~~~~~~--~~-----------------------------------------~~~~~--l~~L~~L~Ls~N~L~~l~ 510 (635)
T 4g8a_A 476 MAGNSFQENF--LP-----------------------------------------DIFTE--LRNLTFLDLSQCQLEQLS 510 (635)
T ss_dssp CTTCEEGGGE--EC-----------------------------------------SCCTT--CTTCCEEECTTSCCCEEC
T ss_pred hhhccccccc--Cc-----------------------------------------hhhhh--ccccCEEECCCCccCCcC
Confidence 5555432200 00 00001 578999999999999999
Q ss_pred CccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCC-CCCCEEEcccCcCcccCCCCcccc
Q 039997 158 SSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTEL-HSLSKFDVSYNNLSCPIPDKEQFS 235 (333)
Q Consensus 158 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l-~~L~~L~l~~N~l~~~~~~~~~~~ 235 (333)
|..|.++++|+.|+|++|+|+++++..|+.+++|++||+++|++++..+ .+..+ .+|+.|++++|+|.|+|...+...
T Consensus 511 ~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~ 590 (635)
T 4g8a_A 511 PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQ 590 (635)
T ss_dssp TTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGHHHHH
T ss_pred hHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcHHHHH
Confidence 9999999999999999999999999999999999999999999999988 88888 589999999999999997544444
Q ss_pred ccCccccCCCCCCCCCCCCCCCCCCCCcCCCCC
Q 039997 236 TFDESSYRGNLNLCCPPINKSCTNLPELLETSS 268 (333)
Q Consensus 236 ~l~~~~~~~n~~~c~~~~~~~c~~~~~~~~~~~ 268 (333)
|++.. ...-..+..+.|..|+...+.+.
T Consensus 591 wl~~~-----~~~~~~~~~~~C~~P~~~~g~~l 618 (635)
T 4g8a_A 591 WIKDQ-----RQLLVEVERMECATPSDKQGMPV 618 (635)
T ss_dssp HHHHT-----TTTBSCGGGCBBCSSTTTTTCBG
T ss_pred HHHhC-----CCccCCCCCceeCCchHHCCCEe
Confidence 44321 11112244567888877766643
No 58
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.87 E-value=1.5e-22 Score=193.31 Aligned_cols=214 Identities=21% Similarity=0.237 Sum_probs=150.8
Q ss_pred CcccEEECCCCcCCCCCCccccCCcccceeecccccccccc--chhhcCCCCCCEEeCCCCcCCCCCCh--hhhcccccc
Q 039997 2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPI--PHQLCQLRKLSIMDLSHNRLNGSIPS--CITNLLFWK 77 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~--~~~f~~L~~L~~LdLs~N~l~~~~p~--~l~~L~~L~ 77 (333)
++|++|++++|.+.+..+. ..+++|++|++++|++++.. |..+.++++|++|++++|.+.+..+. .+.+|+.|+
T Consensus 325 ~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~ 402 (570)
T 2z63_A 325 KSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLD 402 (570)
T ss_dssp SSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEE
T ss_pred cccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEE
Confidence 5678888888887755544 66788888888888887554 67778888888888888887643322 234555666
Q ss_pred ccCCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCccc-cc
Q 039997 78 VGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELT-GD 156 (333)
Q Consensus 78 ~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~ 156 (333)
+.+|.+............ .....+.++.+.... .....+.+ +++|+.|++++|.++ +.
T Consensus 403 l~~n~l~~~~~~~~~~~l-------~~L~~L~l~~n~l~~------------~~~~~~~~--l~~L~~L~l~~n~l~~~~ 461 (570)
T 2z63_A 403 FQHSNLKQMSEFSVFLSL-------RNLIYLDISHTHTRV------------AFNGIFNG--LSSLEVLKMAGNSFQENF 461 (570)
T ss_dssp CTTSEEESCTTSCTTTTC-------TTCCEEECTTSCCEE------------CCTTTTTT--CTTCCEEECTTCEEGGGE
T ss_pred ccCCccccccchhhhhcC-------CCCCEEeCcCCcccc------------cchhhhhc--CCcCcEEECcCCcCcccc
Confidence 666665543211100000 001111111111000 00001111 678999999999997 57
Q ss_pred CCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEcccCcCcccCCCCccc-
Q 039997 157 ISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPIPDKEQF- 234 (333)
Q Consensus 157 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~- 234 (333)
.|..+..+++|+.|++++|++++..|..|..+++|+.|++++|.+++.++ .+..+++|+.+++++|+++|.|+....+
T Consensus 462 ~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~ 541 (570)
T 2z63_A 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLS 541 (570)
T ss_dssp ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHH
T ss_pred chhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchHHHH
Confidence 88999999999999999999998888999999999999999999999888 7899999999999999999999987666
Q ss_pred cccC
Q 039997 235 STFD 238 (333)
Q Consensus 235 ~~l~ 238 (333)
.|+.
T Consensus 542 ~wl~ 545 (570)
T 2z63_A 542 RWLN 545 (570)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 59
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=1.7e-22 Score=178.50 Aligned_cols=200 Identities=20% Similarity=0.172 Sum_probs=118.1
Q ss_pred CcccEEECCCCcCCCCCCccc--cCCcccceeeccccccccccc----hhhcCCCCCCEEeCCCCcCCCCCChhh---hc
Q 039997 2 SALEILDLRDNYFSGRIPYGI--NEHSNLRALLLKGNYLQGPIP----HQLCQLRKLSIMDLSHNRLNGSIPSCI---TN 72 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~~~~~~~--~~l~~L~~L~L~~N~i~~~~~----~~f~~L~~L~~LdLs~N~l~~~~p~~l---~~ 72 (333)
++|++|++++|.+++..|..+ .++++|++|++++|++++..+ ..+..+++|++|++++|++.+..|..+ .+
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 458999999999998899888 899999999999999986544 455689999999999999987766654 45
Q ss_pred cccccccCCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCc
Q 039997 73 LLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNE 152 (333)
Q Consensus 73 L~~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~ 152 (333)
|+.|++++|.+.+........... .+++|++|++++|+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~------------------------------------------~l~~L~~L~Ls~N~ 208 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPH------------------------------------------KFPAIQNLALRNTG 208 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTT------------------------------------------SSCCCCSCBCCSSC
T ss_pred CCEEECCCCCCccchhhhHHHhhh------------------------------------------cCCCCCEEECCCCC
Confidence 566677777654311000000000 03445555555555
Q ss_pred ccccCCc---cccCccccceeecccccCCCCchHHHhCC---CCCCEEeccCCcccCCCCCCCCCCCCCEEEcccCcCcc
Q 039997 153 LTGDISS---EIGDLRNIHGLNLSHNFLSGSIPESFSNL---KMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSC 226 (333)
Q Consensus 153 l~~~~~~---~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l---~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~ 226 (333)
++...+. .+.++++|++|+|++|++++..|..+..+ ++|++|++++|+++.++..+. ++|+.|++++|.+++
T Consensus 209 l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~ 286 (310)
T 4glp_A 209 METPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNR 286 (310)
T ss_dssp CCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCS
T ss_pred CCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCC
Confidence 5422111 23444555555555555554444334333 355555555555554333332 455555555555554
Q ss_pred cCCCCccccccCccccCCCC
Q 039997 227 PIPDKEQFSTFDESSYRGNL 246 (333)
Q Consensus 227 ~~~~~~~~~~l~~~~~~~n~ 246 (333)
. |....+..++.+.+.+|+
T Consensus 287 ~-~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 287 A-PQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp C-CCTTSCCCCSCEECSSTT
T ss_pred C-chhhhCCCccEEECcCCC
Confidence 2 222334444444555554
No 60
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.87 E-value=2.9e-22 Score=193.38 Aligned_cols=160 Identities=27% Similarity=0.296 Sum_probs=108.3
Q ss_pred CCcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhccccccccC
Q 039997 1 DSALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGN 80 (333)
Q Consensus 1 ~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~~L~~~~ 80 (333)
++++++|||++|.|+++.+.+|.++++|++|+|++|+|+++.|++|.++++|++|+|++|++++..+..|.++
T Consensus 51 p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L------- 123 (635)
T 4g8a_A 51 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL------- 123 (635)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTC-------
T ss_pred CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCC-------
Confidence 3578899999999997777889999999999999999998888899999999999999999886555555543
Q ss_pred CccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCcc
Q 039997 81 GDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSE 160 (333)
Q Consensus 81 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 160 (333)
.+|++|+|++|+++++.+..
T Consensus 124 ------------------------------------------------------------~~L~~L~Ls~N~l~~l~~~~ 143 (635)
T 4g8a_A 124 ------------------------------------------------------------SSLQKLVAVETNLASLENFP 143 (635)
T ss_dssp ------------------------------------------------------------TTCCEEECTTSCCCCSTTCC
T ss_pred ------------------------------------------------------------CCCCEEECCCCcCCCCChhh
Confidence 44555666666666555555
Q ss_pred ccCccccceeecccccCCCC-chHHHhCCCCCCEEeccCCcccCCCC-CCCCCCC----CCEEEcccCcCccc
Q 039997 161 IGDLRNIHGLNLSHNFLSGS-IPESFSNLKMIESLDLSHNKLNGQIP-QLTELHS----LSKFDVSYNNLSCP 227 (333)
Q Consensus 161 ~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~----L~~L~l~~N~l~~~ 227 (333)
|+++++|++|+|++|.+++. .|..++.+++|+.|++++|+++++.+ .+..+.+ ...++++.|.+...
T Consensus 144 ~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i 216 (635)
T 4g8a_A 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI 216 (635)
T ss_dssp CTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEE
T ss_pred hhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCccccc
Confidence 66666666666666665543 34555556666666666666655544 3333222 23455555555443
No 61
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.86 E-value=2e-21 Score=188.02 Aligned_cols=242 Identities=18% Similarity=0.206 Sum_probs=121.7
Q ss_pred CcccEEECCCCcCCCCCCc--cccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhc----ccc
Q 039997 2 SALEILDLRDNYFSGRIPY--GINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITN----LLF 75 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~~~~~--~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~----L~~ 75 (333)
++|++|++++|.++ .+|. .++++++|++|++++|++++.+| .|..+++|+.|++++|+++ .+|..+.. |+.
T Consensus 305 ~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~ 381 (636)
T 4eco_A 305 EKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVEN 381 (636)
T ss_dssp GTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCE
T ss_pred CCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcE
Confidence 56788888888887 6777 78888888888888888876666 7777778888888888777 56655533 555
Q ss_pred ccccCCccccccccCCCCc---ccccccccCCC---CCcCCCCCCCCc-cccceEEEEeeccccccchhhh---hccccE
Q 039997 76 WKVGNGDLYGLVERGRDFD---LEDIYNYYNST---VPLSLDRSDTRT-LDTQVVVNFMTKNRYESYKGVI---LEYMAG 145 (333)
Q Consensus 76 L~~~~n~~~~~~~~~~~~~---~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---l~~L~~ 145 (333)
|++++|.+..++....... +.......+.. .+..+....... .........+..+.+..++... +++|+.
T Consensus 382 L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~ 461 (636)
T 4eco_A 382 LSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSS 461 (636)
T ss_dssp EECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSE
T ss_pred EEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCE
Confidence 6667777665544322211 11111111111 111111000000 0112233333344443333222 345555
Q ss_pred EECCCCcccccCCccccCcc-------ccceeecccccCCCCchHHHh--CCCCCCEEeccCCcccCCCCCCCCCCCCCE
Q 039997 146 LDLSSNELTGDISSEIGDLR-------NIHGLNLSHNFLSGSIPESFS--NLKMIESLDLSHNKLNGQIPQLTELHSLSK 216 (333)
Q Consensus 146 L~Ls~n~l~~~~~~~~~~l~-------~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~ 216 (333)
|++++|+++.+++..+.... +|+.|+|++|+++ .+|..+. .+++|+.|++++|.+++++..+..+++|+.
T Consensus 462 L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~ 540 (636)
T 4eco_A 462 INLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKG 540 (636)
T ss_dssp EECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCE
T ss_pred EECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCE
Confidence 55555555533333333222 5555555555555 2333333 555555555555555553224445555555
Q ss_pred EEcc------cCcCcccCCCC-ccccccCccccCCCCC
Q 039997 217 FDVS------YNNLSCPIPDK-EQFSTFDESSYRGNLN 247 (333)
Q Consensus 217 L~l~------~N~l~~~~~~~-~~~~~l~~~~~~~n~~ 247 (333)
|+++ +|.+.+..|.. ..+..++.+++.+|..
T Consensus 541 L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 541 FGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI 578 (636)
T ss_dssp EECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred EECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC
Confidence 5552 33344333322 2334444444444443
No 62
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.86 E-value=1.6e-21 Score=188.72 Aligned_cols=82 Identities=15% Similarity=0.221 Sum_probs=69.3
Q ss_pred CcccEEECCCCcCCCCCCccccCCcccceeeccccc-ccc-ccchhhcCC------CCCCEEeCCCCcCCCCCCh--hhh
Q 039997 2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNY-LQG-PIPHQLCQL------RKLSIMDLSHNRLNGSIPS--CIT 71 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~-i~~-~~~~~f~~L------~~L~~LdLs~N~l~~~~p~--~l~ 71 (333)
++|++|+|++|.+.+.+|..|.++++|++|++++|+ +++ ..|..+..+ ++|++|++++|+++ .+|. .+.
T Consensus 249 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~ 327 (636)
T 4eco_A 249 KDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQ 327 (636)
T ss_dssp TTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHT
T ss_pred CCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhc
Confidence 578999999999999999999999999999999998 887 788877776 89999999999998 7776 554
Q ss_pred ---ccccccccCCccc
Q 039997 72 ---NLLFWKVGNGDLY 84 (333)
Q Consensus 72 ---~L~~L~~~~n~~~ 84 (333)
+|+.|++.+|.+.
T Consensus 328 ~l~~L~~L~L~~N~l~ 343 (636)
T 4eco_A 328 KMKKLGMLECLYNQLE 343 (636)
T ss_dssp TCTTCCEEECCSCCCE
T ss_pred cCCCCCEEeCcCCcCc
Confidence 4556677777776
No 63
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.86 E-value=7.7e-22 Score=188.32 Aligned_cols=117 Identities=23% Similarity=0.298 Sum_probs=88.5
Q ss_pred hccccEEECCCCcccccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEE
Q 039997 140 LEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFD 218 (333)
Q Consensus 140 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~ 218 (333)
+++|+.|++++|++++..|..+. ++|+.|+|++|+++.++ ..+..+++|+.|++++|+++.+++ .+..+++|+.++
T Consensus 427 l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip-~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~ 503 (562)
T 3a79_B 427 AESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIP-KDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIW 503 (562)
T ss_dssp CTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCC-TTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEE
T ss_pred cccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccC-hhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEE
Confidence 57899999999999876655443 68999999999999554 445599999999999999998777 489999999999
Q ss_pred cccCcCcccCCCCcccc-ccCccc-cCCCCCCCCCCCCCCCCC
Q 039997 219 VSYNNLSCPIPDKEQFS-TFDESS-YRGNLNLCCPPINKSCTN 259 (333)
Q Consensus 219 l~~N~l~~~~~~~~~~~-~l~~~~-~~~n~~~c~~~~~~~c~~ 259 (333)
+++|++.|.|+..+.+. +..... ...+...|+.+....|..
T Consensus 504 l~~N~~~c~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~ 546 (562)
T 3a79_B 504 LHDNPWDCTCPGIRYLSEWINKHSGVVRNSAGSVAPDSAKCSG 546 (562)
T ss_dssp CCSCCBCCCHHHHHHHHHHHHHTTTTEECSSSSBCSSSSCBSS
T ss_pred ecCCCcCCCcchHHHHHHHHHhcCCcccccccCCCCCCCccCC
Confidence 99999999997654433 221111 011223356777888876
No 64
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.86 E-value=3.3e-21 Score=182.21 Aligned_cols=107 Identities=24% Similarity=0.242 Sum_probs=84.4
Q ss_pred hccccEEECCCCcccccCCccccCccccceeecccccCCC--CchHHHhCCCCCCEEeccCCcccC-CCC-CCCCCCCCC
Q 039997 140 LEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSG--SIPESFSNLKMIESLDLSHNKLNG-QIP-QLTELHSLS 215 (333)
Q Consensus 140 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~L~~N~l~~-~~~-~~~~l~~L~ 215 (333)
+++|++|++++|++++..|..+.++++|+.|++++|++++ ..|..++.+++|+.|++++|.+++ +++ .+..+++|+
T Consensus 323 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~ 402 (520)
T 2z7x_B 323 ISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLL 402 (520)
T ss_dssp CCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCC
T ss_pred CCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCC
Confidence 6789999999999998889999999999999999999996 345779999999999999999998 444 577888888
Q ss_pred EEEcccCcCcccCCCCccccccCccccCCCCC
Q 039997 216 KFDVSYNNLSCPIPDKEQFSTFDESSYRGNLN 247 (333)
Q Consensus 216 ~L~l~~N~l~~~~~~~~~~~~l~~~~~~~n~~ 247 (333)
.|++++|.+++..+.... ..++.+++.+|..
T Consensus 403 ~L~Ls~N~l~~~~~~~l~-~~L~~L~Ls~N~l 433 (520)
T 2z7x_B 403 SLNMSSNILTDTIFRCLP-PRIKVLDLHSNKI 433 (520)
T ss_dssp EEECCSSCCCGGGGGSCC-TTCCEEECCSSCC
T ss_pred EEECcCCCCCcchhhhhc-ccCCEEECCCCcc
Confidence 888888888654432211 3445555555543
No 65
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.86 E-value=8.3e-22 Score=177.86 Aligned_cols=174 Identities=22% Similarity=0.221 Sum_probs=136.1
Q ss_pred cceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCCh----hhhccccccccCCccccccccCCCCcccccccccC
Q 039997 28 LRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPS----CITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYN 103 (333)
Q Consensus 28 L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~----~l~~L~~L~~~~n~~~~~~~~~~~~~~~~~~~~~~ 103 (333)
-+.+++++|.++. +|..+. ..++.|+|++|+++...+. .+.+|+.|++.+|.+..+....
T Consensus 20 ~~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~------------- 83 (361)
T 2xot_A 20 SNILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEA------------- 83 (361)
T ss_dssp TTEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTT-------------
T ss_pred CCEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhh-------------
Confidence 4789999999995 454443 5689999999999966555 3456777888888776643210
Q ss_pred CCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCccccCccccceeecccccCCCCchH
Q 039997 104 STVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPE 183 (333)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 183 (333)
+.+ +++|+.|+|++|+++.+.+..|.++++|+.|+|++|+|++..+.
T Consensus 84 -------------------------------~~~--l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~ 130 (361)
T 2xot_A 84 -------------------------------FVP--VPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRN 130 (361)
T ss_dssp -------------------------------TTT--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred -------------------------------ccC--CCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHH
Confidence 000 57899999999999999889999999999999999999988899
Q ss_pred HHhCCCCCCEEeccCCcccCCCC-CC---CCCCCCCEEEcccCcCcccCCCC-ccccc--cCccccCCCCCCCC
Q 039997 184 SFSNLKMIESLDLSHNKLNGQIP-QL---TELHSLSKFDVSYNNLSCPIPDK-EQFST--FDESSYRGNLNLCC 250 (333)
Q Consensus 184 ~~~~l~~L~~L~L~~N~l~~~~~-~~---~~l~~L~~L~l~~N~l~~~~~~~-~~~~~--l~~~~~~~n~~~c~ 250 (333)
.|..+++|+.|+|++|.++.+++ .+ ..+++|+.|++++|.++...+.. ..+.. +..+.+.+|++.|+
T Consensus 131 ~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~ 204 (361)
T 2xot_A 131 AFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECD 204 (361)
T ss_dssp TTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred HhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCC
Confidence 99999999999999999998877 55 56899999999999998543221 12222 25678889999985
No 66
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=2e-21 Score=171.54 Aligned_cols=189 Identities=17% Similarity=0.246 Sum_probs=133.1
Q ss_pred CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCCh--hhhcccccccc
Q 039997 2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPS--CITNLLFWKVG 79 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~--~l~~L~~L~~~ 79 (333)
++|++|++++|.++. ++ .+..+++|++|++++|+++++.+ +..+++|++|++++|++++ ++. .+.+|+.|+++
T Consensus 41 ~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~~~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 41 DGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-VSAIAGLQSIKTLDLT 115 (308)
T ss_dssp HTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-CGGGTTCTTCCEEECT
T ss_pred CCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-chhhcCCCCCCEEECC
Confidence 468999999999984 45 68889999999999999986665 8999999999999999984 331 23566677778
Q ss_pred CCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchh-hhhccccEEECCCCcccccCC
Q 039997 80 NGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKG-VILEYMAGLDLSSNELTGDIS 158 (333)
Q Consensus 80 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~ 158 (333)
+|.+..+...... .....+.++.+ .+...+. ..+++|+.|++++|++++..+
T Consensus 116 ~n~l~~~~~l~~l----------~~L~~L~l~~n-----------------~l~~~~~l~~l~~L~~L~l~~n~l~~~~~ 168 (308)
T 1h6u_A 116 STQITDVTPLAGL----------SNLQVLYLDLN-----------------QITNISPLAGLTNLQYLSIGNAQVSDLTP 168 (308)
T ss_dssp TSCCCCCGGGTTC----------TTCCEEECCSS-----------------CCCCCGGGGGCTTCCEEECCSSCCCCCGG
T ss_pred CCCCCCchhhcCC----------CCCCEEECCCC-----------------ccCcCccccCCCCccEEEccCCcCCCChh
Confidence 8777664321111 11111111111 1111111 115678888888888876544
Q ss_pred ccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEEEcccCcCccc
Q 039997 159 SEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCP 227 (333)
Q Consensus 159 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~ 227 (333)
+..+++|+.|++++|++++..+ +..+++|+.|++++|++++..+ +..+++|+.|++++|++++.
T Consensus 169 --l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 169 --LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp --GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEECC
T ss_pred --hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCeeecC
Confidence 7788888888888888886544 7778888888888888876654 67778888888888888653
No 67
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.86 E-value=4.7e-22 Score=175.75 Aligned_cols=178 Identities=22% Similarity=0.197 Sum_probs=141.7
Q ss_pred CcccEEECCCCcCCCCCC----ccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCC-------CCChhh
Q 039997 2 SALEILDLRDNYFSGRIP----YGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNG-------SIPSCI 70 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~~~~----~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~-------~~p~~l 70 (333)
++|++|+|++|.+++..+ ..+..+++|++|++++|+++++.+..|..+++|++||+++|++.+ ..+..+
T Consensus 117 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l 196 (310)
T 4glp_A 117 LALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKF 196 (310)
T ss_dssp BCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSS
T ss_pred CCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcC
Confidence 578999999999997555 345678999999999999998999999999999999999999753 122456
Q ss_pred hccccccccCCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCC
Q 039997 71 TNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSS 150 (333)
Q Consensus 71 ~~L~~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~ 150 (333)
.+|+.|++++|.+..+....... + ..+++|++|+|++
T Consensus 197 ~~L~~L~Ls~N~l~~l~~~~~~l-----------------------------------------~--~~l~~L~~L~Ls~ 233 (310)
T 4glp_A 197 PAIQNLALRNTGMETPTGVCAAL-----------------------------------------A--AAGVQPHSLDLSH 233 (310)
T ss_dssp CCCCSCBCCSSCCCCHHHHHHHH-----------------------------------------H--HHTCCCSSEECTT
T ss_pred CCCCEEECCCCCCCchHHHHHHH-----------------------------------------H--hcCCCCCEEECCC
Confidence 67888888888775422110000 0 0157899999999
Q ss_pred CcccccCCccccCc---cccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEEEcccCcCcc
Q 039997 151 NELTGDISSEIGDL---RNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSC 226 (333)
Q Consensus 151 n~l~~~~~~~~~~l---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~ 226 (333)
|++++..|..+..+ ++|++|+|++|+++.+ |..+ .++|+.|++++|+++++ |.+..+++|+.|++++|+++.
T Consensus 234 N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~l-p~~~--~~~L~~L~Ls~N~l~~~-~~~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 234 NSLRATVNPSAPRCMWSSALNSLNLSFAGLEQV-PKGL--PAKLRVLDLSSNRLNRA-PQPDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp SCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSC-CSCC--CSCCSCEECCSCCCCSC-CCTTSCCCCSCEECSSTTTSC
T ss_pred CCCCccchhhHHhccCcCcCCEEECCCCCCCch-hhhh--cCCCCEEECCCCcCCCC-chhhhCCCccEEECcCCCCCC
Confidence 99998878777766 6999999999999954 5444 27999999999999986 446788999999999999873
No 68
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.86 E-value=1.7e-20 Score=167.06 Aligned_cols=236 Identities=17% Similarity=0.165 Sum_probs=165.9
Q ss_pred cccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhh---cccccccc
Q 039997 3 ALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCIT---NLLFWKVG 79 (333)
Q Consensus 3 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~---~L~~L~~~ 79 (333)
+++.++++++.++ .+|..+. +++++|++++|+++++.+..|..+++|++|++++|++++..|..+. +|+.|++.
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 6889999999998 5777665 6899999999999988888999999999999999999977777665 56677778
Q ss_pred CCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeecccccc---chh--hhhccccEEECCCCccc
Q 039997 80 NGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYES---YKG--VILEYMAGLDLSSNELT 154 (333)
Q Consensus 80 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~l~~L~~L~Ls~n~l~ 154 (333)
+|.+..++.... ..+.......+... .+....+..+. ......+..+.... .+. ..+++|+.|++++|.++
T Consensus 109 ~n~l~~l~~~~~-~~L~~L~l~~n~l~--~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 109 KNQLKELPEKMP-KTLQELRVHENEIT--KVRKSVFNGLN-QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp SSCCSBCCSSCC-TTCCEEECCSSCCC--BBCHHHHTTCT-TCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred CCcCCccChhhc-ccccEEECCCCccc--ccCHhHhcCCc-cccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence 887776543322 11111111111110 00000001111 11222233333221 111 11678999999999988
Q ss_pred ccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEcccCcCcccCCCCcc
Q 039997 155 GDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPIPDKEQ 233 (333)
Q Consensus 155 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~ 233 (333)
......+ ++|+.|++++|++++..+..+..+++|+.|++++|.+++..+ .+..+++|+.|++++|.++........
T Consensus 185 ~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~ 261 (330)
T 1xku_A 185 TIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLAD 261 (330)
T ss_dssp SCCSSCC---TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTT
T ss_pred cCCcccc---ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhcc
Confidence 5443332 789999999999998888899999999999999999998887 888999999999999999855444556
Q ss_pred ccccCccccCCCCCC
Q 039997 234 FSTFDESSYRGNLNL 248 (333)
Q Consensus 234 ~~~l~~~~~~~n~~~ 248 (333)
...++.+++.+|...
T Consensus 262 l~~L~~L~l~~N~i~ 276 (330)
T 1xku_A 262 HKYIQVVYLHNNNIS 276 (330)
T ss_dssp CSSCCEEECCSSCCC
T ss_pred CCCcCEEECCCCcCC
Confidence 677788888888654
No 69
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.86 E-value=1.5e-20 Score=167.72 Aligned_cols=237 Identities=17% Similarity=0.140 Sum_probs=166.1
Q ss_pred cccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhh---cccccccc
Q 039997 3 ALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCIT---NLLFWKVG 79 (333)
Q Consensus 3 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~---~L~~L~~~ 79 (333)
+++.++++++.++ .+|..+. ++|++|++++|.++++.|+.|.++++|++|++++|++++..|..+. +|+.|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 5899999999998 6777664 7999999999999988899999999999999999999977777664 56677778
Q ss_pred CCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeecccccc---chhhh-hccccEEECCCCcccc
Q 039997 80 NGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYES---YKGVI-LEYMAGLDLSSNELTG 155 (333)
Q Consensus 80 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-l~~L~~L~Ls~n~l~~ 155 (333)
+|.+..++.... ..+.......+... .+....+..+.. .....+..+.+.. .++.. ..+|+.|++++|++++
T Consensus 111 ~n~l~~l~~~~~-~~L~~L~l~~n~i~--~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 111 KNHLVEIPPNLP-SSLVELRIHDNRIR--KVPKGVFSGLRN-MNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG 186 (332)
T ss_dssp SSCCCSCCSSCC-TTCCEEECCSSCCC--CCCSGGGSSCSS-CCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSS
T ss_pred CCcCCccCcccc-ccCCEEECCCCccC--ccCHhHhCCCcc-CCEEECCCCccccCCCCcccccCCccCEEECcCCCCCc
Confidence 887776544332 11111111111111 111111111111 1222223333221 01000 1167888888888875
Q ss_pred cCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEcccCcCcccCCCCccc
Q 039997 156 DISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPIPDKEQF 234 (333)
Q Consensus 156 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~ 234 (333)
++.. +. ++|+.|++++|.+++..+..+..+++|+.|++++|.+++..+ .+..+++|+.|++++|.++........+
T Consensus 187 l~~~-~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l 263 (332)
T 2ft3_A 187 IPKD-LP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDL 263 (332)
T ss_dssp CCSS-SC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGC
T ss_pred cCcc-cc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcC
Confidence 4333 22 689999999999998888889999999999999999999888 8899999999999999998554444567
Q ss_pred cccCccccCCCCCCC
Q 039997 235 STFDESSYRGNLNLC 249 (333)
Q Consensus 235 ~~l~~~~~~~n~~~c 249 (333)
..++.+++.+|....
T Consensus 264 ~~L~~L~l~~N~l~~ 278 (332)
T 2ft3_A 264 KLLQVVYLHTNNITK 278 (332)
T ss_dssp TTCCEEECCSSCCCB
T ss_pred ccCCEEECCCCCCCc
Confidence 778888888887654
No 70
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.85 E-value=4e-21 Score=161.25 Aligned_cols=136 Identities=23% Similarity=0.247 Sum_probs=123.7
Q ss_pred CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhccccccccCC
Q 039997 2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGNG 81 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~~L~~~~n 81 (333)
++|++|+|++|.|+++.+..|.++++|++|+|++|+|+++.|+.|.++++|++|+|++|+++...+..|..
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~--------- 102 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEG--------- 102 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTT---------
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccC---------
Confidence 57999999999999888889999999999999999999999999999999999999999999544433433
Q ss_pred ccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCccc
Q 039997 82 DLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEI 161 (333)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 161 (333)
+++|+.|+|++|++++..+..|
T Consensus 103 ----------------------------------------------------------l~~L~~L~L~~N~l~~~~~~~~ 124 (220)
T 2v9t_B 103 ----------------------------------------------------------LFSLQLLLLNANKINCLRVDAF 124 (220)
T ss_dssp ----------------------------------------------------------CTTCCEEECCSSCCCCCCTTTT
T ss_pred ----------------------------------------------------------CCCCCEEECCCCCCCEeCHHHc
Confidence 4678999999999999999999
Q ss_pred cCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCC
Q 039997 162 GDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQ 204 (333)
Q Consensus 162 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 204 (333)
.++++|+.|+|++|++++..+..|..+++|+.|++++|.+...
T Consensus 125 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 167 (220)
T 2v9t_B 125 QDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICD 167 (220)
T ss_dssp TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred CCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCC
Confidence 9999999999999999999888999999999999999998753
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.85 E-value=3.7e-22 Score=187.08 Aligned_cols=192 Identities=21% Similarity=0.197 Sum_probs=150.1
Q ss_pred CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhccccccccCC
Q 039997 2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGNG 81 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~~L~~~~n 81 (333)
++|++|+|++|.+++..| |.++++|++|+|++|.|+++.+ .++|+.|++++|.+++..+..+.+|+.|++.+|
T Consensus 58 ~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N 130 (487)
T 3oja_A 58 TKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAANNNISRVSCSRGQGKKNIYLANN 130 (487)
T ss_dssp TTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEECCSSCCCCEEECCCSSCEEEECCSS
T ss_pred CCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEECcCCcCCCCCccccCCCCEEECCCC
Confidence 689999999999996655 9999999999999999986654 389999999999999877778889999999999
Q ss_pred ccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccch-h---hhhccccEEECCCCcccccC
Q 039997 82 DLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYK-G---VILEYMAGLDLSSNELTGDI 157 (333)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~l~~L~~L~Ls~n~l~~~~ 157 (333)
.+.++....... .. .+....+..+.+.... . ..+++|+.|+|++|.+++..
T Consensus 131 ~l~~~~~~~~~~--------l~-----------------~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~ 185 (487)
T 3oja_A 131 KITMLRDLDEGC--------RS-----------------RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK 185 (487)
T ss_dssp CCCSGGGBCGGG--------GS-----------------SEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE
T ss_pred CCCCCCchhhcC--------CC-----------------CCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccc
Confidence 988753211100 00 1111222222222111 1 12588999999999999774
Q ss_pred CccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEEEcccCcCcccC
Q 039997 158 SSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCPI 228 (333)
Q Consensus 158 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~ 228 (333)
+ ...+++|+.|+|++|.+++.++. +..+++|+.|++++|.++++++.+..+++|+.+++++|++.|.+
T Consensus 186 ~--~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~ 253 (487)
T 3oja_A 186 G--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGT 253 (487)
T ss_dssp C--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHH
T ss_pred c--cccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcc
Confidence 4 33589999999999999976554 88999999999999999987778889999999999999999664
No 72
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.85 E-value=1.5e-21 Score=184.58 Aligned_cols=181 Identities=20% Similarity=0.232 Sum_probs=144.4
Q ss_pred CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCC--CCChhh---hccccc
Q 039997 2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNG--SIPSCI---TNLLFW 76 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~--~~p~~l---~~L~~L 76 (333)
.+|+.|++++|.+.... .+..+++|++|++++|++++..|..+..+++|+.|++++|++++ .+|..+ .+|+.|
T Consensus 302 ~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L 379 (520)
T 2z7x_B 302 MNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQL 379 (520)
T ss_dssp CCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEE
T ss_pred CceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEE
Confidence 46899999999987432 23678999999999999998888999999999999999999985 334444 456677
Q ss_pred cccCCcccc-ccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccc
Q 039997 77 KVGNGDLYG-LVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTG 155 (333)
Q Consensus 77 ~~~~n~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 155 (333)
++++|.+.+ ++.... . .+++|+.|++++|++++
T Consensus 380 ~Ls~N~l~~~l~~~~~--------------------------------------------~--~l~~L~~L~Ls~N~l~~ 413 (520)
T 2z7x_B 380 DISQNSVSYDEKKGDC--------------------------------------------S--WTKSLLSLNMSSNILTD 413 (520)
T ss_dssp ECCSSCCBCCGGGCSC--------------------------------------------C--CCTTCCEEECCSSCCCG
T ss_pred ECCCCcCCcccccchh--------------------------------------------c--cCccCCEEECcCCCCCc
Confidence 777777665 221100 0 05779999999999987
Q ss_pred cCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEcccCcCcccCCCCcc
Q 039997 156 DISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPIPDKEQ 233 (333)
Q Consensus 156 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~ 233 (333)
..|..+. ++|+.|++++|+++ .+|..+..+++|+.|++++|+++.+++ .+..+++|+.+++++|+++|.|+..+.
T Consensus 414 ~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~ 489 (520)
T 2z7x_B 414 TIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 489 (520)
T ss_dssp GGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHH
T ss_pred chhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCCchHH
Confidence 7766554 79999999999999 555556699999999999999998777 599999999999999999999975443
No 73
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.85 E-value=6.6e-22 Score=175.35 Aligned_cols=236 Identities=20% Similarity=0.195 Sum_probs=146.9
Q ss_pred cccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCC-hhhhccccccccCC
Q 039997 3 ALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIP-SCITNLLFWKVGNG 81 (333)
Q Consensus 3 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p-~~l~~L~~L~~~~n 81 (333)
+++..+++.+.+....+..+..+++|++|+|++|+++++.|..|..+++|++|++++|.+++..+ ..+.+|+.|++++|
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n 90 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNN 90 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSS
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCC
Confidence 46677888888875555667778899999999999999999999999999999999999985443 34567778888888
Q ss_pred ccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhh---hhccccEEECCCCcccccCC
Q 039997 82 DLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGV---ILEYMAGLDLSSNELTGDIS 158 (333)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~L~~L~Ls~n~l~~~~~ 158 (333)
.+.++........+. ...+....... ..+ .......+..+.+...... .+++|+.|++++|.+++..+
T Consensus 91 ~l~~l~~~~~L~~L~---l~~n~l~~~~~--~~~----~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 161 (317)
T 3o53_A 91 YVQELLVGPSIETLH---AANNNISRVSC--SRG----QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161 (317)
T ss_dssp EEEEEEECTTCCEEE---CCSSCCSEEEE--CCC----SSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEG
T ss_pred ccccccCCCCcCEEE---CCCCccCCcCc--ccc----CCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccH
Confidence 887755331111111 11111100000 000 1122233333333333221 14566777777777766555
Q ss_pred ccc-cCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEEEcccCcCcccCCCCcccccc
Q 039997 159 SEI-GDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCPIPDKEQFSTF 237 (333)
Q Consensus 159 ~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~l 237 (333)
..+ ..+++|+.|++++|.+++..+ ...+++|+.|++++|.++++++.+..+++|+.|++++|.++...+....+..+
T Consensus 162 ~~~~~~l~~L~~L~L~~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L 239 (317)
T 3o53_A 162 AELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNL 239 (317)
T ss_dssp GGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTC
T ss_pred HHHhhccCcCCEEECCCCcCccccc--ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCC
Confidence 554 356677777777777664422 22366677777777777766556666677777777777776554444455566
Q ss_pred CccccCCCCCCC
Q 039997 238 DESSYRGNLNLC 249 (333)
Q Consensus 238 ~~~~~~~n~~~c 249 (333)
+.+++.+|+..|
T Consensus 240 ~~L~l~~N~~~~ 251 (317)
T 3o53_A 240 EHFDLRGNGFHC 251 (317)
T ss_dssp CEEECTTCCCBH
T ss_pred CEEEccCCCccC
Confidence 666677777665
No 74
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=8.7e-21 Score=167.43 Aligned_cols=170 Identities=18% Similarity=0.269 Sum_probs=126.9
Q ss_pred CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCC-hhhhccccccccC
Q 039997 2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIP-SCITNLLFWKVGN 80 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p-~~l~~L~~L~~~~ 80 (333)
++|++|+|++|.+++. +. +.++++|++|++++|+++++ +.+..+++|+.|++++|++++..+ ..+.+|+.|++.+
T Consensus 63 ~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~ 138 (308)
T 1h6u_A 63 NNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDL 138 (308)
T ss_dssp TTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCS
T ss_pred CCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEECCCCCCCCchhhcCCCCCCEEECCC
Confidence 6899999999999954 44 99999999999999999865 368999999999999999985322 2345677788888
Q ss_pred CccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchh-hhhccccEEECCCCcccccCCc
Q 039997 81 GDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKG-VILEYMAGLDLSSNELTGDISS 159 (333)
Q Consensus 81 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~ 159 (333)
|.+.++..... ......+.++. +.+..++. ..+++|+.|++++|++++..+
T Consensus 139 n~l~~~~~l~~----------l~~L~~L~l~~-----------------n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~- 190 (308)
T 1h6u_A 139 NQITNISPLAG----------LTNLQYLSIGN-----------------AQVSDLTPLANLSKLTTLKADDNKISDISP- 190 (308)
T ss_dssp SCCCCCGGGGG----------CTTCCEEECCS-----------------SCCCCCGGGTTCTTCCEEECCSSCCCCCGG-
T ss_pred CccCcCccccC----------CCCccEEEccC-----------------CcCCCChhhcCCCCCCEEECCCCccCcChh-
Confidence 88776543111 11111112222 22221111 116889999999999997654
Q ss_pred cccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC
Q 039997 160 EIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP 206 (333)
Q Consensus 160 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 206 (333)
+..+++|+.|++++|++++..+ +..+++|+.|++++|.+++.+.
T Consensus 191 -l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 191 -LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPV 234 (308)
T ss_dssp -GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEECCCE
T ss_pred -hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeecCCe
Confidence 8899999999999999997664 8899999999999999987544
No 75
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.85 E-value=1.6e-21 Score=160.17 Aligned_cols=113 Identities=22% Similarity=0.344 Sum_probs=71.5
Q ss_pred ccccEEECCCCcccccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEc
Q 039997 141 EYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDV 219 (333)
Q Consensus 141 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l 219 (333)
++|++|+|++|++++..|..|.++++|+.|+|++|+|++..+..|..+++|+.|++++|++++..+ .+..+++|+.|++
T Consensus 54 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 133 (192)
T 1w8a_A 54 PHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNL 133 (192)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEEC
T ss_pred CCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEe
Confidence 445556666666666666666666666666666666666666666667777777777777776666 6777777888888
Q ss_pred ccCcCcccCCCCccccccCccccCCCCCCCCCCC
Q 039997 220 SYNNLSCPIPDKEQFSTFDESSYRGNLNLCCPPI 253 (333)
Q Consensus 220 ~~N~l~~~~~~~~~~~~l~~~~~~~n~~~c~~~~ 253 (333)
++|+++|.|+..+...++......++...|+.|.
T Consensus 134 ~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P~ 167 (192)
T 1w8a_A 134 ASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPS 167 (192)
T ss_dssp TTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSST
T ss_pred CCCCccCcCcchHHHHHHHHcCCCCCCCCCCCCh
Confidence 8888888776443333333333344444444443
No 76
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.85 E-value=2e-20 Score=185.22 Aligned_cols=240 Identities=15% Similarity=0.145 Sum_probs=165.0
Q ss_pred CcccEEECCCCcCCCCCCc--cccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhh---c-ccc
Q 039997 2 SALEILDLRDNYFSGRIPY--GINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCIT---N-LLF 75 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~~~~~--~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~---~-L~~ 75 (333)
++|++|+|++|.++ .+|. .|.++++|++|+|++|+++ .+| .|..+++|+.|++++|+++ .+|..+. + |+.
T Consensus 548 ~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~ 623 (876)
T 4ecn_A 548 PKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEG 623 (876)
T ss_dssp TTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCE
T ss_pred CCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCE
Confidence 48999999999999 7888 8999999999999999999 666 8999999999999999998 7776664 3 666
Q ss_pred ccccCCccccccccCCCCc---ccccccccCCCCC--cCCCCCCCCc-cccceEEEEeeccccccchhhh---hccccEE
Q 039997 76 WKVGNGDLYGLVERGRDFD---LEDIYNYYNSTVP--LSLDRSDTRT-LDTQVVVNFMTKNRYESYKGVI---LEYMAGL 146 (333)
Q Consensus 76 L~~~~n~~~~~~~~~~~~~---~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---l~~L~~L 146 (333)
|++++|.+..++....... +.......+.... ..+. ..... ....+....+..+.+..++... +++|+.|
T Consensus 624 L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~-~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L 702 (876)
T 4ecn_A 624 LGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNIS-CSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTI 702 (876)
T ss_dssp EECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCS-SCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEE
T ss_pred EECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccch-hhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEE
Confidence 7888888876554333221 1111111111110 0000 00000 0113444555666666665443 5788889
Q ss_pred ECCCCcccccCCccccCc-------cccceeecccccCCCCchHHHh--CCCCCCEEeccCCcccCCCCCCCCCCCCCEE
Q 039997 147 DLSSNELTGDISSEIGDL-------RNIHGLNLSHNFLSGSIPESFS--NLKMIESLDLSHNKLNGQIPQLTELHSLSKF 217 (333)
Q Consensus 147 ~Ls~n~l~~~~~~~~~~l-------~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L 217 (333)
+|++|+++.+++..+... ++|+.|+|++|+++ .+|..+. .+++|+.|++++|.+++++..+..+++|+.|
T Consensus 703 ~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L 781 (876)
T 4ecn_A 703 ILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAF 781 (876)
T ss_dssp ECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEE
T ss_pred ECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEE
Confidence 999888885555555433 38888899988888 4556665 8888888999988888864477788888888
Q ss_pred Eccc------CcCcccCCCC-ccccccCccccCCCCC
Q 039997 218 DVSY------NNLSCPIPDK-EQFSTFDESSYRGNLN 247 (333)
Q Consensus 218 ~l~~------N~l~~~~~~~-~~~~~l~~~~~~~n~~ 247 (333)
++++ |.+.+..|.. ..+..++.+++.+|..
T Consensus 782 ~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 782 GIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI 818 (876)
T ss_dssp ECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred ECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC
Confidence 8876 5566555543 4566677777777765
No 77
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.85 E-value=2.6e-21 Score=158.91 Aligned_cols=179 Identities=23% Similarity=0.313 Sum_probs=137.6
Q ss_pred cEEECCCCcCCCCCCccccCCcccceeeccccccccccch-hhcCCCCCCEEeCCCCcCCCCCChhhhccccccccCCcc
Q 039997 5 EILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPH-QLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGNGDL 83 (333)
Q Consensus 5 ~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~-~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~~L~~~~n~~ 83 (333)
+++++++|.++ .+|..+.. ++++|++++|+|+++.+. .|..+++|++|++++|++++..|..|..
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~----------- 76 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG----------- 76 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTT-----------
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCC-----------
Confidence 68999999998 67776653 999999999999987775 5899999999999999999777777655
Q ss_pred ccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCccccC
Q 039997 84 YGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGD 163 (333)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 163 (333)
+++|+.|+|++|++++..+..|.+
T Consensus 77 --------------------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~ 100 (192)
T 1w8a_A 77 --------------------------------------------------------ASHIQELQLGENKIKEISNKMFLG 100 (192)
T ss_dssp --------------------------------------------------------CTTCCEEECCSCCCCEECSSSSTT
T ss_pred --------------------------------------------------------cccCCEEECCCCcCCccCHHHhcC
Confidence 366889999999999999999999
Q ss_pred ccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC--CCCCCCCCCEEEcccCcCcccCCCCccccccCccc
Q 039997 164 LRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP--QLTELHSLSKFDVSYNNLSCPIPDKEQFSTFDESS 241 (333)
Q Consensus 164 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~l~~~~ 241 (333)
+++|+.|+|++|++++..|..|..+++|+.|++++|.+.+..+ .+.. .++...+.++...|.-|.. +....-.+
T Consensus 101 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~--~l~~~~~~~~~~~C~~P~~--l~~~~l~~ 176 (192)
T 1w8a_A 101 LHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAE--WLRKKSLNGGAARCGAPSK--VRDVQIKD 176 (192)
T ss_dssp CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHH--HHHHHCCSGGGCBBCSSTT--TTTSBGGG
T ss_pred CCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHH--HHHHcCCCCCCCCCCCChH--HcCCChhh
Confidence 9999999999999999889999999999999999999987544 2211 1222244556666655543 33333334
Q ss_pred cCCCCCCCCCCCCCCC
Q 039997 242 YRGNLNLCCPPINKSC 257 (333)
Q Consensus 242 ~~~n~~~c~~~~~~~c 257 (333)
+..+...|..+....|
T Consensus 177 l~~~~~~C~~~~~~~c 192 (192)
T 1w8a_A 177 LPHSEFKCSSENSEGC 192 (192)
T ss_dssp SCTTTCCCCCC---CC
T ss_pred CcHhhcCcCCCCCCCC
Confidence 5556666665544444
No 78
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.84 E-value=1.6e-21 Score=185.45 Aligned_cols=200 Identities=19% Similarity=0.161 Sum_probs=149.1
Q ss_pred CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhh---ccccccc
Q 039997 2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCIT---NLLFWKV 78 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~---~L~~L~~ 78 (333)
++|++|||++|.|++..|..|.++++|++|++++|+++++.|++|.++++|++||+++|++++..|..+. +|+.|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 5799999999999988899999999999999999999999999999999999999999999977666565 4556777
Q ss_pred cCCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccc-cc-----cchhhhhccccEEECCCCc
Q 039997 79 GNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNR-YE-----SYKGVILEYMAGLDLSSNE 152 (333)
Q Consensus 79 ~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~l~~L~~L~Ls~n~ 152 (333)
++|.+..+....... .+... ....+..+. .. .+.+ +++|++|++++|+
T Consensus 106 s~n~l~~~~~~~~~~-----------------------~l~~L-~~L~L~~n~~~~~~~~~~~~~--l~~L~~L~L~~n~ 159 (549)
T 2z81_A 106 MGNPYQTLGVTSLFP-----------------------NLTNL-QTLRIGNVETFSEIRRIDFAG--LTSLNELEIKALS 159 (549)
T ss_dssp TTCCCSSSCSSCSCT-----------------------TCTTC-CEEEEEESSSCCEECTTTTTT--CCEEEEEEEEETT
T ss_pred CCCcccccchhhhhh-----------------------ccCCc-cEEECCCCccccccCHhhhhc--ccccCeeeccCCc
Confidence 777766431110000 00000 111111111 11 1222 6788999999999
Q ss_pred ccccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCC--C--CCCCCCCCCEEEcccCcCccc
Q 039997 153 LTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI--P--QLTELHSLSKFDVSYNNLSCP 227 (333)
Q Consensus 153 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~--~~~~l~~L~~L~l~~N~l~~~ 227 (333)
+++..|..+..+++|++|++++|.+....+..++.+++|+.|++++|.+++.. + .....++|+.+++++|.+++.
T Consensus 160 l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 238 (549)
T 2z81_A 160 LRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDE 238 (549)
T ss_dssp CCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHH
T ss_pred ccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchh
Confidence 99888889999999999999999988554445567899999999999998753 2 345577899999999988753
No 79
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.84 E-value=8.4e-20 Score=180.75 Aligned_cols=238 Identities=19% Similarity=0.180 Sum_probs=119.8
Q ss_pred CcccEEECCCCc-CCC-CCCccccCCc-------ccceeeccccccccccch--hhcCCCCCCEEeCCCCcCCCCCChhh
Q 039997 2 SALEILDLRDNY-FSG-RIPYGINEHS-------NLRALLLKGNYLQGPIPH--QLCQLRKLSIMDLSHNRLNGSIPSCI 70 (333)
Q Consensus 2 ~~L~~L~Ls~N~-i~~-~~~~~~~~l~-------~L~~L~L~~N~i~~~~~~--~f~~L~~L~~LdLs~N~l~~~~p~~l 70 (333)
++|++|+|++|. +++ .+|..+..++ +|++|+|++|+++ .+|. .|..+++|+.|++++|+++ .+| .+
T Consensus 515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~ 591 (876)
T 4ecn_A 515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AF 591 (876)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CC
T ss_pred CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hh
Confidence 456677777776 665 5565554444 6777777777776 4444 6667777777777777666 555 33
Q ss_pred ---hccccccccCCccccccccCCCCc--ccccccccCCCCCcCCCCCCCCccc-cceEEEEeeccccccc----h----
Q 039997 71 ---TNLLFWKVGNGDLYGLVERGRDFD--LEDIYNYYNSTVPLSLDRSDTRTLD-TQVVVNFMTKNRYESY----K---- 136 (333)
Q Consensus 71 ---~~L~~L~~~~n~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----~---- 136 (333)
.+|+.|++.+|.+..++....... +.......+... .+.. .+.... ..+....+..+.+... +
T Consensus 592 ~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~--~lp~-~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~ 668 (876)
T 4ecn_A 592 GTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK--YIPN-IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMD 668 (876)
T ss_dssp CTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC--SCCS-CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTT
T ss_pred cCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCC--cCch-hhhccccCCCCEEECcCCcCCCccccchhhhc
Confidence 344455556666554332211110 111111111111 1110 000000 1122333333332111 1
Q ss_pred hhhhccccEEECCCCcccccCCccccCccccceeecccccCCCCchHHHhCC-------CCCCEEeccCCcccCCCCCCC
Q 039997 137 GVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNL-------KMIESLDLSHNKLNGQIPQLT 209 (333)
Q Consensus 137 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-------~~L~~L~L~~N~l~~~~~~~~ 209 (333)
.....+|+.|++++|+++.+++..+..+++|+.|+|++|+++.+++..+... ++|+.|+|++|+++.++..+.
T Consensus 669 ~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~ 748 (876)
T 4ecn_A 669 DYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFR 748 (876)
T ss_dssp TCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGS
T ss_pred cccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhh
Confidence 0012356667777777664444445566667777777777664443333322 266777777777664444444
Q ss_pred --CCCCCCEEEcccCcCcccCCCCccccccCccccCCC
Q 039997 210 --ELHSLSKFDVSYNNLSCPIPDKEQFSTFDESSYRGN 245 (333)
Q Consensus 210 --~l~~L~~L~l~~N~l~~~~~~~~~~~~l~~~~~~~n 245 (333)
.+++|+.|++++|.+++.......+..++.+++..|
T Consensus 749 ~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N 786 (876)
T 4ecn_A 749 ATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQ 786 (876)
T ss_dssp TTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCC
T ss_pred hccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCC
Confidence 666777777777766663323334455555555443
No 80
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.84 E-value=4.7e-20 Score=165.32 Aligned_cols=233 Identities=18% Similarity=0.223 Sum_probs=131.8
Q ss_pred CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCCh--hhhcccccccc
Q 039997 2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPS--CITNLLFWKVG 79 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~--~l~~L~~L~~~ 79 (333)
++|++|++++|.++. + ..+.++++|++|++++|.++++.+ +..+++|+.|++++|......+. .+.+|+.|++.
T Consensus 88 ~~L~~L~L~~n~i~~-~-~~~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~ 163 (347)
T 4fmz_A 88 VKLTNLYIGTNKITD-I-SALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVT 163 (347)
T ss_dssp TTCCEEECCSSCCCC-C-GGGTTCTTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECC
T ss_pred CcCCEEEccCCcccC-c-hHHcCCCcCCEEECcCCcccCchh--hccCCceeEEECCCCCCcccccchhhCCCCcEEEec
Confidence 678999999999985 3 368899999999999999986554 78899999999998865533332 23455566666
Q ss_pred CCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchh-hhhccccEEECCCCcccccCC
Q 039997 80 NGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKG-VILEYMAGLDLSSNELTGDIS 158 (333)
Q Consensus 80 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~ 158 (333)
+|.+...........+.......+...... . +... .......+..+....... ..+++|+.|++++|++++..+
T Consensus 164 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~--~~~l-~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~ 238 (347)
T 4fmz_A 164 ESKVKDVTPIANLTDLYSLSLNYNQIEDIS--P--LASL-TSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP 238 (347)
T ss_dssp SSCCCCCGGGGGCTTCSEEECTTSCCCCCG--G--GGGC-TTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG
T ss_pred CCCcCCchhhccCCCCCEEEccCCcccccc--c--ccCC-CccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc
Confidence 666655433111111111111111111000 0 0111 111112222222222221 115567777777777665443
Q ss_pred ccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEEEcccCcCcccCCCC-cccccc
Q 039997 159 SEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCPIPDK-EQFSTF 237 (333)
Q Consensus 159 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~-~~~~~l 237 (333)
+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+++. +.+..+++|+.|++++|.++...+.. ..+..+
T Consensus 239 --~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 313 (347)
T 4fmz_A 239 --LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNL 313 (347)
T ss_dssp --GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTC
T ss_pred --hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC-hhhcCCCCCCEEECcCCcCCCcChhHhhccccC
Confidence 66666777777777766643 3466666677777777766654 44556666677777766665443321 234455
Q ss_pred CccccCCCCCC
Q 039997 238 DESSYRGNLNL 248 (333)
Q Consensus 238 ~~~~~~~n~~~ 248 (333)
+.+++.+|+..
T Consensus 314 ~~L~L~~n~l~ 324 (347)
T 4fmz_A 314 TTLFLSQNHIT 324 (347)
T ss_dssp SEEECCSSSCC
T ss_pred CEEEccCCccc
Confidence 55566666543
No 81
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.84 E-value=1.1e-20 Score=158.53 Aligned_cols=138 Identities=21% Similarity=0.190 Sum_probs=124.1
Q ss_pred CcccEEECCCCcCCCCCC-ccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhccccccccC
Q 039997 2 SALEILDLRDNYFSGRIP-YGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGN 80 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~~~~-~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~~L~~~~ 80 (333)
..+++|+|++|.|++..+ ..|.++++|++|+|++|+|+++.+.+|.++++|++|+|++|++++..+..|..
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-------- 103 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKG-------- 103 (220)
T ss_dssp TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTT--------
T ss_pred CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcC--------
Confidence 467899999999997754 46899999999999999999999999999999999999999999666655544
Q ss_pred CccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCcc
Q 039997 81 GDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSE 160 (333)
Q Consensus 81 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 160 (333)
+++|++|+|++|++++..|..
T Consensus 104 -----------------------------------------------------------l~~L~~L~Ls~N~l~~~~~~~ 124 (220)
T 2v70_A 104 -----------------------------------------------------------LESLKTLMLRSNRITCVGNDS 124 (220)
T ss_dssp -----------------------------------------------------------CSSCCEEECTTSCCCCBCTTS
T ss_pred -----------------------------------------------------------CcCCCEEECCCCcCCeECHhH
Confidence 467889999999999999999
Q ss_pred ccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC
Q 039997 161 IGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP 206 (333)
Q Consensus 161 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 206 (333)
|.++++|+.|+|++|++++..|..|..+++|+.|++++|.+.+..+
T Consensus 125 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 125 FIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp STTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred cCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 9999999999999999998889999999999999999999986544
No 82
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.84 E-value=5.3e-21 Score=181.87 Aligned_cols=201 Identities=18% Similarity=0.163 Sum_probs=147.7
Q ss_pred CcccEEECCCCcCCCCCCccc-cCCcccceeeccccccccccch---hhcCCCCCCEEeCCCCcCCCCC-----Chhhhc
Q 039997 2 SALEILDLRDNYFSGRIPYGI-NEHSNLRALLLKGNYLQGPIPH---QLCQLRKLSIMDLSHNRLNGSI-----PSCITN 72 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~~~~~~~-~~l~~L~~L~L~~N~i~~~~~~---~f~~L~~L~~LdLs~N~l~~~~-----p~~l~~ 72 (333)
++|++|++++|.++ .+|..+ +++++|++|++++|++++..|. .+..+++|+.|++++|++++.. ...+.+
T Consensus 310 ~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~ 388 (549)
T 2z81_A 310 EKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKN 388 (549)
T ss_dssp TTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTT
T ss_pred ccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCC
Confidence 46788888888887 566655 5788999999999998866543 3678889999999999887432 234456
Q ss_pred cccccccCCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCc
Q 039997 73 LLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNE 152 (333)
Q Consensus 73 L~~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~ 152 (333)
|+.|++++|.+..++..... . .......+..+.+..+++...++|++|++++|+
T Consensus 389 L~~L~Ls~N~l~~lp~~~~~---------~-----------------~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~ 442 (549)
T 2z81_A 389 LTSLDISRNTFHPMPDSCQW---------P-----------------EKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNN 442 (549)
T ss_dssp CCEEECTTCCCCCCCSCCCC---------C-----------------TTCCEEECTTSCCSCCCTTSCTTCSEEECCSSC
T ss_pred CCEEECCCCCCccCChhhcc---------c-----------------ccccEEECCCCCcccccchhcCCceEEECCCCC
Confidence 77777788877654332110 0 011122233333444444445789999999999
Q ss_pred ccccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEcccCcCcccCCCC
Q 039997 153 LTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPIPDK 231 (333)
Q Consensus 153 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~ 231 (333)
+++.. ..+++|+.|+|++|+++.++ . ...+++|+.|++++|++++.++ .+..+++|+.+++++|++.|.|+..
T Consensus 443 l~~~~----~~l~~L~~L~Ls~N~l~~ip-~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~ 516 (549)
T 2z81_A 443 LDSFS----LFLPRLQELYISRNKLKTLP-D-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 516 (549)
T ss_dssp CSCCC----CCCTTCCEEECCSSCCSSCC-C-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHHH
T ss_pred hhhhc----ccCChhcEEECCCCccCcCC-C-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCccH
Confidence 98643 57899999999999999554 3 4678999999999999999888 7899999999999999999999855
Q ss_pred cccc
Q 039997 232 EQFS 235 (333)
Q Consensus 232 ~~~~ 235 (333)
.++.
T Consensus 517 ~~l~ 520 (549)
T 2z81_A 517 DYLS 520 (549)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 83
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.84 E-value=9.2e-21 Score=161.07 Aligned_cols=172 Identities=13% Similarity=0.147 Sum_probs=140.2
Q ss_pred CcccEEECCCCc-CCCCCCccccCCcccceeeccc-cccccccchhhcCCCCCCEEeCCCCcCCCCCCh--hhhccc---
Q 039997 2 SALEILDLRDNY-FSGRIPYGINEHSNLRALLLKG-NYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPS--CITNLL--- 74 (333)
Q Consensus 2 ~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~L~~-N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~--~l~~L~--- 74 (333)
++|++|++++|. ++.+.+..|.++++|++|++++ |+++++.+..|.++++|++|++++|++++ +|. .+.+++
T Consensus 55 ~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~~~~l~~L~~L~ 133 (239)
T 2xwt_C 55 PNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPDLTKVYSTDIFF 133 (239)
T ss_dssp TTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCCCTTCCBCCSEE
T ss_pred CCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-cccccccccccccc
Confidence 679999999997 9877777999999999999999 99998888999999999999999999985 564 233343
Q ss_pred cccccCC-ccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhcccc-EEECCCCc
Q 039997 75 FWKVGNG-DLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMA-GLDLSSNE 152 (333)
Q Consensus 75 ~L~~~~n-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~-~L~Ls~n~ 152 (333)
.|++.+| .+..+.... +.+ +++|+ .|++++|+
T Consensus 134 ~L~l~~N~~l~~i~~~~--------------------------------------------~~~--l~~L~~~L~l~~n~ 167 (239)
T 2xwt_C 134 ILEITDNPYMTSIPVNA--------------------------------------------FQG--LCNETLTLKLYNNG 167 (239)
T ss_dssp EEEEESCTTCCEECTTT--------------------------------------------TTT--TBSSEEEEECCSCC
T ss_pred EEECCCCcchhhcCccc--------------------------------------------ccc--hhcceeEEEcCCCC
Confidence 5556666 554422110 001 57899 99999999
Q ss_pred ccccCCccccCccccceeeccccc-CCCCchHHHhCC-CCCCEEeccCCcccCCCCCCCCCCCCCEEEcccCc
Q 039997 153 LTGDISSEIGDLRNIHGLNLSHNF-LSGSIPESFSNL-KMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNN 223 (333)
Q Consensus 153 l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~ 223 (333)
++.+.+..|.. ++|+.|++++|+ ++++.+..|..+ ++|+.|++++|+++.+++. .+++|+.|+++++.
T Consensus 168 l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 168 FTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp CCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC-
T ss_pred CcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCcc
Confidence 99777777777 899999999995 998888889999 9999999999999977664 57789999998763
No 84
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.84 E-value=7.7e-21 Score=181.49 Aligned_cols=176 Identities=22% Similarity=0.179 Sum_probs=130.1
Q ss_pred CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhc---cccccc
Q 039997 2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITN---LLFWKV 78 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~---L~~L~~ 78 (333)
+++++|||++|.+++..+..|.++++|++|+|++|+++++.+++|.++++|++|++++|+++...|..|.. |+.|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 57889999999999888888999999999999999999888888999999999999999988666665544 445555
Q ss_pred cCCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCccccc-C
Q 039997 79 GNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGD-I 157 (333)
Q Consensus 79 ~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~ 157 (333)
.+|.+..+.... +. .+.+|++|++++|.+++. .
T Consensus 108 ~~n~l~~l~~~~--------------------------------------------~~--~l~~L~~L~L~~n~l~~~~l 141 (570)
T 2z63_A 108 VETNLASLENFP--------------------------------------------IG--HLKTLKELNVAHNLIQSFKL 141 (570)
T ss_dssp TTSCCCCSTTCS--------------------------------------------CT--TCTTCCEEECCSSCCCCCCC
T ss_pred cccccccCCCcc--------------------------------------------cc--ccccccEEecCCCccceecC
Confidence 555544422100 00 056677788888877763 4
Q ss_pred CccccCccccceeecccccCCCCchHHHhCCCCC----CEEeccCCcccCCCC-CCCCCCCCCEEEcccCcC
Q 039997 158 SSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMI----ESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNL 224 (333)
Q Consensus 158 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L----~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~~N~l 224 (333)
|..|.++++|++|++++|++++..+..++.+++| +.+++++|.+++..+ .+... +|+.+++++|..
T Consensus 142 p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~ 212 (570)
T 2z63_A 142 PEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFD 212 (570)
T ss_dssp CGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCS
T ss_pred hhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccc
Confidence 7777778888888888888777666677777777 777888888777766 44443 677888777643
No 85
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.83 E-value=3.3e-20 Score=162.32 Aligned_cols=168 Identities=21% Similarity=0.319 Sum_probs=135.7
Q ss_pred CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCCh--hhhcccccccc
Q 039997 2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPS--CITNLLFWKVG 79 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~--~l~~L~~L~~~ 79 (333)
++|++|++++|.++.. + .+..+++|++|++++|+++++.+ +..+++|+.|++++|+++. +|. .+.+|+.|++.
T Consensus 46 ~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~L~ 120 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LSSLKDLKKLKSLSLE 120 (291)
T ss_dssp HTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GGGGTTCTTCCEEECT
T ss_pred CcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-ChhhccCCCCCEEECC
Confidence 4689999999999854 4 48889999999999999997666 8999999999999999984 332 23455566666
Q ss_pred CCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCc
Q 039997 80 NGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISS 159 (333)
Q Consensus 80 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 159 (333)
+|.+..+.. +. .+++|+.|++++|++++. .
T Consensus 121 ~n~i~~~~~----------------------------------------------l~--~l~~L~~L~l~~n~l~~~--~ 150 (291)
T 1h6t_A 121 HNGISDING----------------------------------------------LV--HLPQLESLYLGNNKITDI--T 150 (291)
T ss_dssp TSCCCCCGG----------------------------------------------GG--GCTTCCEEECCSSCCCCC--G
T ss_pred CCcCCCChh----------------------------------------------hc--CCCCCCEEEccCCcCCcc--h
Confidence 666654210 00 057799999999999865 6
Q ss_pred cccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEEEcccCcCccc
Q 039997 160 EIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCP 227 (333)
Q Consensus 160 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~ 227 (333)
.+..+++|+.|++++|++++..+ +..+++|+.|++++|.++.+ +.+..+++|+.|++++|+++..
T Consensus 151 ~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 151 VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-GGGTTCTTCSEEEEEEEEEECC
T ss_pred hhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-hhhccCCCCCEEECcCCcccCC
Confidence 78899999999999999997765 88999999999999999875 4588899999999999998753
No 86
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.83 E-value=3.8e-20 Score=156.23 Aligned_cols=136 Identities=24% Similarity=0.269 Sum_probs=122.2
Q ss_pred CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhccccccccCC
Q 039997 2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGNG 81 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~~L~~~~n 81 (333)
++|++|+|++|.|++..|..|.++++|++|+|++|+|+.+.+..|.++++|+.|+|++|++++..+..|..
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~--------- 110 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDR--------- 110 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT---------
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCc---------
Confidence 67999999999999888999999999999999999999888889999999999999999999555544443
Q ss_pred ccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCccc
Q 039997 82 DLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEI 161 (333)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 161 (333)
+++|+.|+|++|+++ ..|..+
T Consensus 111 ----------------------------------------------------------l~~L~~L~Ls~N~l~-~lp~~~ 131 (229)
T 3e6j_A 111 ----------------------------------------------------------LVHLKELFMCCNKLT-ELPRGI 131 (229)
T ss_dssp ----------------------------------------------------------CTTCCEEECCSSCCC-SCCTTG
T ss_pred ----------------------------------------------------------chhhCeEeccCCccc-ccCccc
Confidence 467889999999999 667788
Q ss_pred cCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCC
Q 039997 162 GDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 205 (333)
Q Consensus 162 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 205 (333)
..+++|+.|+|++|++++..+..|..+++|+.|++++|.+.+..
T Consensus 132 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 132 ERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp GGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred ccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 99999999999999999888888999999999999999998644
No 87
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.83 E-value=1.1e-20 Score=155.28 Aligned_cols=120 Identities=21% Similarity=0.242 Sum_probs=93.8
Q ss_pred ccccEEECCCCcccccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEc
Q 039997 141 EYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDV 219 (333)
Q Consensus 141 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l 219 (333)
++|+.|+|++|.++++.+..|.++++|+.|+|++|+|+++.+..|..+++|+.|+|++|.++.+++ .+..+++|+.|++
T Consensus 54 ~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 133 (193)
T 2wfh_A 54 KHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAI 133 (193)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEe
Confidence 567788888888888888889999999999999999998888889999999999999999998888 7889999999999
Q ss_pred ccCcCcccCCCCccccccCccccCCCCCCCCCCCCCCCCCCCCcCCCCC
Q 039997 220 SYNNLSCPIPDKEQFSTFDESSYRGNLNLCCPPINKSCTNLPELLETSS 268 (333)
Q Consensus 220 ~~N~l~~~~~~~~~~~~l~~~~~~~n~~~c~~~~~~~c~~~~~~~~~~~ 268 (333)
++|++.|.|...+...++...... +....|..|+...+...
T Consensus 134 ~~N~~~C~c~l~~l~~~~~~~~~~--------~~~~~C~~P~~l~g~~l 174 (193)
T 2wfh_A 134 GANPLYCDCNMQWLSDWVKSEYKE--------PGIARCAGPGEMADKLL 174 (193)
T ss_dssp CSSCEECSGGGHHHHHHHHHSSCC--------CSCCBEEESGGGTTCBT
T ss_pred CCCCeecCCcCHHHHHHHHhccCC--------CCCcCcCCchHHCCCCc
Confidence 999999999654333333222111 23346776666655533
No 88
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.83 E-value=3e-19 Score=165.90 Aligned_cols=207 Identities=21% Similarity=0.180 Sum_probs=130.8
Q ss_pred CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhccccccccCC
Q 039997 2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGNG 81 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~~L~~~~n 81 (333)
++|++||+++|.+++. | .+..+++|++|++++|+++++ | +..+++|++|++++|++++.....+.+|+.|++.+|
T Consensus 42 ~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~~~~~l~~L~~L~L~~N 116 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTN 116 (457)
T ss_dssp TTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECCSS
T ss_pred CCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCceeecCCCCcCCEEECCCC
Confidence 5788999999999854 5 688889999999999998865 3 788899999999999888654455667778888888
Q ss_pred ccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeecc-ccccchhhhhccccEEECCCCcccccCCcc
Q 039997 82 DLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKN-RYESYKGVILEYMAGLDLSSNELTGDISSE 160 (333)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 160 (333)
.+.++. ......+.......+....+ + +....... ...+..+ ....++-..+++|+.|++++|+++++ |
T Consensus 117 ~l~~l~-~~~l~~L~~L~l~~N~l~~l--~---l~~l~~L~-~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l-~-- 186 (457)
T 3bz5_A 117 KLTKLD-VSQNPLLTYLNCARNTLTEI--D---VSHNTQLT-ELDCHLNKKITKLDVTPQTQLTTLDCSFNKITEL-D-- 186 (457)
T ss_dssp CCSCCC-CTTCTTCCEEECTTSCCSCC--C---CTTCTTCC-EEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCC-C--
T ss_pred cCCeec-CCCCCcCCEEECCCCcccee--c---cccCCcCC-EEECCCCCcccccccccCCcCCEEECCCCcccee-c--
Confidence 877652 11111111111111111111 1 11111111 1112222 11122212256777888888877764 2
Q ss_pred ccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEEEcccCcCcccC
Q 039997 161 IGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCPI 228 (333)
Q Consensus 161 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~ 228 (333)
+..+++|+.|++++|++++. .++.+++|+.|++++|++++++ +..+++|+.|++++|.+++..
T Consensus 187 l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~~ 249 (457)
T 3bz5_A 187 VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELD 249 (457)
T ss_dssp CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC
T ss_pred cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCCcC
Confidence 66777777777777777755 2667777777777777777743 666777777777777776543
No 89
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.83 E-value=2.4e-20 Score=153.75 Aligned_cols=150 Identities=15% Similarity=0.251 Sum_probs=113.1
Q ss_pred CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhccccccccCC
Q 039997 2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGNG 81 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~~L~~~~n 81 (333)
++|++|++++|.|+ .+| .+..+++|++|++++|.++. +..+..+++|++|++++|++++..|..+..
T Consensus 44 ~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~--------- 110 (197)
T 4ezg_A 44 NSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSG--------- 110 (197)
T ss_dssp HTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTT---------
T ss_pred CCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcC---------
Confidence 36778888888887 455 57778888888888887653 236777888888888888877544443332
Q ss_pred ccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCccc
Q 039997 82 DLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEI 161 (333)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 161 (333)
+++|++|++++|++++..+..+
T Consensus 111 ----------------------------------------------------------l~~L~~L~Ls~n~i~~~~~~~l 132 (197)
T 4ezg_A 111 ----------------------------------------------------------LTSLTLLDISHSAHDDSILTKI 132 (197)
T ss_dssp ----------------------------------------------------------CTTCCEEECCSSBCBGGGHHHH
T ss_pred ----------------------------------------------------------CCCCCEEEecCCccCcHhHHHH
Confidence 4668889999999987777888
Q ss_pred cCccccceeeccccc-CCCCchHHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEEEcccCcCc
Q 039997 162 GDLRNIHGLNLSHNF-LSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLS 225 (333)
Q Consensus 162 ~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~ 225 (333)
..+++|+.|++++|. ++.. + .+..+++|+.|++++|.+++.. .+..+++|+.|++++|++.
T Consensus 133 ~~l~~L~~L~L~~n~~i~~~-~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 133 NTLPKVNSIDLSYNGAITDI-M-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp TTCSSCCEEECCSCTBCCCC-G-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC---
T ss_pred hhCCCCCEEEccCCCCcccc-H-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcccC
Confidence 888999999999998 7644 4 5888899999999999888754 6777888999999998875
No 90
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.82 E-value=1.8e-19 Score=168.08 Aligned_cols=81 Identities=19% Similarity=0.320 Sum_probs=55.0
Q ss_pred CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCC-hhhhccccccccC
Q 039997 2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIP-SCITNLLFWKVGN 80 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p-~~l~~L~~L~~~~ 80 (333)
++|++|||++|.+++.. . +.++++|++|++++|+++++.+ +..+++|++|++++|.+++..+ ..+.+|+.|++.+
T Consensus 68 ~~L~~L~Ls~n~l~~~~-~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~ 143 (466)
T 1o6v_A 68 NNLTQINFSNNQLTDIT-P-LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSS 143 (466)
T ss_dssp TTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEE
T ss_pred cCCCEEECCCCccCCch-h-hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChHHcCCCCCCEEECCC
Confidence 56788888888887543 3 7788888888888888876555 7788888888888887774322 2234455555555
Q ss_pred Cccccc
Q 039997 81 GDLYGL 86 (333)
Q Consensus 81 n~~~~~ 86 (333)
|.+..+
T Consensus 144 n~l~~~ 149 (466)
T 1o6v_A 144 NTISDI 149 (466)
T ss_dssp EEECCC
T ss_pred CccCCC
Confidence 555443
No 91
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.82 E-value=1.8e-19 Score=161.50 Aligned_cols=212 Identities=18% Similarity=0.273 Sum_probs=150.7
Q ss_pred CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCC-hhhhccccccccC
Q 039997 2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIP-SCITNLLFWKVGN 80 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p-~~l~~L~~L~~~~ 80 (333)
++|++|++++|..... +..+.++++|++|++++|.+.+..+ +..+++|+.|++++|.+....+ ..+.+++.|++.+
T Consensus 132 ~~L~~L~l~~n~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~ 208 (347)
T 4fmz_A 132 TKMYSLNLGANHNLSD-LSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYV 208 (347)
T ss_dssp TTCCEEECTTCTTCCC-CGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCS
T ss_pred CceeEEECCCCCCccc-ccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcccccccccCCCccceeeccc
Confidence 5789999999966533 4458899999999999999986555 8899999999999999884332 2345566777777
Q ss_pred CccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCcc
Q 039997 81 GDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSE 160 (333)
Q Consensus 81 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 160 (333)
|.+........ ......+.++.+.+..... + ..+++|+.|++++|.+++. ..
T Consensus 209 n~l~~~~~~~~----------~~~L~~L~l~~n~l~~~~~--------------~--~~l~~L~~L~l~~n~l~~~--~~ 260 (347)
T 4fmz_A 209 NQITDITPVAN----------MTRLNSLKIGNNKITDLSP--------------L--ANLSQLTWLEIGTNQISDI--NA 260 (347)
T ss_dssp SCCCCCGGGGG----------CTTCCEEECCSSCCCCCGG--------------G--TTCTTCCEEECCSSCCCCC--GG
T ss_pred CCCCCCchhhc----------CCcCCEEEccCCccCCCcc--------------h--hcCCCCCEEECCCCccCCC--hh
Confidence 77665433111 1112222222222211100 1 1167889999999988864 46
Q ss_pred ccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEcccCcCcccCCCCccccccCc
Q 039997 161 IGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPIPDKEQFSTFDE 239 (333)
Q Consensus 161 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~l~~ 239 (333)
+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+++..+ .+..+++|+.|++++|++++..| ...+..++.
T Consensus 261 ~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~ 337 (347)
T 4fmz_A 261 VKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDS 337 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSE
T ss_pred HhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhhccce
Confidence 78888999999999998865 357888899999999999887777 78888899999999999887665 556677777
Q ss_pred cccCCCCC
Q 039997 240 SSYRGNLN 247 (333)
Q Consensus 240 ~~~~~n~~ 247 (333)
+++.+|+.
T Consensus 338 L~l~~N~i 345 (347)
T 4fmz_A 338 ADFANQVI 345 (347)
T ss_dssp ESSSCC--
T ss_pred eehhhhcc
Confidence 77777753
No 92
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.82 E-value=1.3e-19 Score=168.91 Aligned_cols=210 Identities=22% Similarity=0.274 Sum_probs=149.6
Q ss_pred CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCC--hhhhcccccccc
Q 039997 2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIP--SCITNLLFWKVG 79 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p--~~l~~L~~L~~~ 79 (333)
++|++|++++|.+++. ..+.++++|++|++++|++++..| +..+++|+.|++++|+++.. + ..+.+|+.|++.
T Consensus 177 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~ 251 (466)
T 1o6v_A 177 TTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLA 251 (466)
T ss_dssp TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECC
T ss_pred CCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc-hhhhcCCCCCEEECC
Confidence 5799999999999853 358899999999999999987766 77899999999999998843 2 234567778888
Q ss_pred CCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchh-hhhccccEEECCCCcccccCC
Q 039997 80 NGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKG-VILEYMAGLDLSSNELTGDIS 158 (333)
Q Consensus 80 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~ 158 (333)
+|.+.+....... .....+.++.+. +...+. ..+++|+.|++++|++++..+
T Consensus 252 ~n~l~~~~~~~~l----------~~L~~L~l~~n~-----------------l~~~~~~~~l~~L~~L~L~~n~l~~~~~ 304 (466)
T 1o6v_A 252 NNQISNLAPLSGL----------TKLTELKLGANQ-----------------ISNISPLAGLTALTNLELNENQLEDISP 304 (466)
T ss_dssp SSCCCCCGGGTTC----------TTCSEEECCSSC-----------------CCCCGGGTTCTTCSEEECCSSCCSCCGG
T ss_pred CCccccchhhhcC----------CCCCEEECCCCc-----------------cCccccccCCCccCeEEcCCCcccCchh
Confidence 8877664331111 111111111111 111111 115778888888888886554
Q ss_pred ccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEEEcccCcCcccCCCCccccccC
Q 039997 159 SEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCPIPDKEQFSTFD 238 (333)
Q Consensus 159 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~l~ 238 (333)
+..+++|+.|++++|++++..| +..+++|+.|++++|.+++. +.+..+++|+.|++++|++++..| ...+..++
T Consensus 305 --~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~ 378 (466)
T 1o6v_A 305 --ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV-SSLANLTNINWLSAGHNQISDLTP-LANLTRIT 378 (466)
T ss_dssp --GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCC
T ss_pred --hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc-hhhccCCCCCEEeCCCCccCccch-hhcCCCCC
Confidence 6788888888888888887665 67888888888888888875 567778888888888888887665 45566667
Q ss_pred ccccCCCCCCC
Q 039997 239 ESSYRGNLNLC 249 (333)
Q Consensus 239 ~~~~~~n~~~c 249 (333)
.+.+.+|++..
T Consensus 379 ~L~l~~n~~~~ 389 (466)
T 1o6v_A 379 QLGLNDQAWTN 389 (466)
T ss_dssp EEECCCEEEEC
T ss_pred EEeccCCcccC
Confidence 77777776543
No 93
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.81 E-value=8.8e-19 Score=162.78 Aligned_cols=225 Identities=19% Similarity=0.168 Sum_probs=142.2
Q ss_pred CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhccccccccCC
Q 039997 2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGNG 81 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~~L~~~~n 81 (333)
++|++|+|++|.|++. | ++.+++|++|++++|+++++ + +..+++|++|++++|++++.....+.+|+.|++.+|
T Consensus 64 ~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~l~~~~l~~L~~L~l~~N 137 (457)
T 3bz5_A 64 TGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTKLDVSQNPLLTYLNCARN 137 (457)
T ss_dssp TTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSCCCCTTCTTCCEEECTTS
T ss_pred CCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCeecCCCCCcCCEEECCCC
Confidence 6799999999999964 4 88999999999999999976 3 889999999999999998654455677888888888
Q ss_pred ccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCccc
Q 039997 82 DLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEI 161 (333)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 161 (333)
.+.++. ......+.......+... ..+ .+..+ .......+..+.+..++-..+++|+.|++++|++++. .+
T Consensus 138 ~l~~l~-l~~l~~L~~L~l~~n~~~-~~~---~~~~l-~~L~~L~ls~n~l~~l~l~~l~~L~~L~l~~N~l~~~---~l 208 (457)
T 3bz5_A 138 TLTEID-VSHNTQLTELDCHLNKKI-TKL---DVTPQ-TQLTTLDCSFNKITELDVSQNKLLNRLNCDTNNITKL---DL 208 (457)
T ss_dssp CCSCCC-CTTCTTCCEEECTTCSCC-CCC---CCTTC-TTCCEEECCSSCCCCCCCTTCTTCCEEECCSSCCSCC---CC
T ss_pred ccceec-cccCCcCCEEECCCCCcc-ccc---ccccC-CcCCEEECCCCccceeccccCCCCCEEECcCCcCCee---cc
Confidence 887752 111111111111111000 000 11111 1122233344444444323367888888888888865 37
Q ss_pred cCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCC-------CCCEEEcccCcCcccCCCCcc
Q 039997 162 GDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELH-------SLSKFDVSYNNLSCPIPDKEQ 233 (333)
Q Consensus 162 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~-------~L~~L~l~~N~l~~~~~~~~~ 233 (333)
..+++|+.|++++|+++++ | ++.+++|+.|++++|.+++.++ .+..+. +|+.+++++|.+.+..|. ..
T Consensus 209 ~~l~~L~~L~Ls~N~l~~i-p--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~-~~ 284 (457)
T 3bz5_A 209 NQNIQLTFLDCSSNKLTEI-D--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQA-EG 284 (457)
T ss_dssp TTCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEEC-TT
T ss_pred ccCCCCCEEECcCCccccc-C--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCcccc-cc
Confidence 7888888888888888874 4 7788888888888888887655 443332 344444554544333321 12
Q ss_pred ccccCccccCCC
Q 039997 234 FSTFDESSYRGN 245 (333)
Q Consensus 234 ~~~l~~~~~~~n 245 (333)
+..++.+++.+|
T Consensus 285 l~~L~~L~Ls~n 296 (457)
T 3bz5_A 285 CRKIKELDVTHN 296 (457)
T ss_dssp CTTCCCCCCTTC
T ss_pred cccCCEEECCCC
Confidence 233444444444
No 94
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.81 E-value=2.2e-19 Score=171.86 Aligned_cols=168 Identities=20% Similarity=0.324 Sum_probs=136.5
Q ss_pred CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCC--hhhhcccccccc
Q 039997 2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIP--SCITNLLFWKVG 79 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p--~~l~~L~~L~~~ 79 (333)
++|+.|++++|.|.. ++ .+..+++|+.|+|++|+++++.+ +..+++|+.|+|++|.+.+ +| ..+.+|+.|+++
T Consensus 43 ~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~~l~~l~~L~~L~Ls 117 (605)
T 1m9s_A 43 NSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LSSLKDLKKLKSLSLE 117 (605)
T ss_dssp TTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CTTSTTCTTCCEEECT
T ss_pred CCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-ChhhccCCCCCEEEec
Confidence 468889999999984 44 58889999999999999987666 8899999999999999874 33 233455566666
Q ss_pred CCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCc
Q 039997 80 NGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISS 159 (333)
Q Consensus 80 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 159 (333)
+|.+..+.. +. .+++|+.|+|++|.+++. .
T Consensus 118 ~N~l~~l~~----------------------------------------------l~--~l~~L~~L~Ls~N~l~~l--~ 147 (605)
T 1m9s_A 118 HNGISDING----------------------------------------------LV--HLPQLESLYLGNNKITDI--T 147 (605)
T ss_dssp TSCCCCCGG----------------------------------------------GG--GCTTCSEEECCSSCCCCC--G
T ss_pred CCCCCCCcc----------------------------------------------cc--CCCccCEEECCCCccCCc--h
Confidence 666554211 00 167899999999999976 6
Q ss_pred cccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEEEcccCcCccc
Q 039997 160 EIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCP 227 (333)
Q Consensus 160 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~ 227 (333)
.+..+++|+.|+|++|.+++..| +..+++|+.|+|++|.++++ +.+..+++|+.|++++|++.+.
T Consensus 148 ~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l-~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 148 VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp GGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-GGGTTCTTCSEEECCSEEEECC
T ss_pred hhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC-hHHccCCCCCEEEccCCcCcCC
Confidence 78899999999999999998766 89999999999999999976 5788899999999999998765
No 95
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.80 E-value=4e-19 Score=153.11 Aligned_cols=167 Identities=21% Similarity=0.204 Sum_probs=113.3
Q ss_pred ccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCC-hhhhccccccccCCc
Q 039997 4 LEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIP-SCITNLLFWKVGNGD 82 (333)
Q Consensus 4 L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p-~~l~~L~~L~~~~n~ 82 (333)
++.+++++|.+++. + .+..+++|++|++++|.|+.+. .+..+++|+.|++++|++++..+ ..+.+|+.|++++|.
T Consensus 21 l~~l~l~~~~i~~~-~-~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~ 96 (263)
T 1xeu_A 21 AVKQNLGKQSVTDL-V-SQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNR 96 (263)
T ss_dssp HHHHHHTCSCTTSE-E-CHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSC
T ss_pred HHHHHhcCCCcccc-c-chhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCCc
Confidence 34455566666532 2 4555666666666666665332 45566666666666666653222 112233344444444
Q ss_pred cccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCcccc
Q 039997 83 LYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIG 162 (333)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 162 (333)
+..+... . ..+|+.|++++|++++. ..+.
T Consensus 97 l~~l~~~----------------------------------------------~---~~~L~~L~L~~N~l~~~--~~l~ 125 (263)
T 1xeu_A 97 LKNLNGI----------------------------------------------P---SACLSRLFLDNNELRDT--DSLI 125 (263)
T ss_dssp CSCCTTC----------------------------------------------C---CSSCCEEECCSSCCSBS--GGGT
T ss_pred cCCcCcc----------------------------------------------c---cCcccEEEccCCccCCC--hhhc
Confidence 4331100 0 14588999999999965 3588
Q ss_pred CccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEEEcccCcCcccC
Q 039997 163 DLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCPI 228 (333)
Q Consensus 163 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~ 228 (333)
.+++|+.|++++|++++. + .++.+++|+.|++++|.+++. +.+..+++|+.|++++|++++..
T Consensus 126 ~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 126 HLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp TCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEEECCC
T ss_pred CcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcccCCc
Confidence 999999999999999976 3 688999999999999999987 77888999999999999998763
No 96
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.80 E-value=2.7e-19 Score=143.54 Aligned_cols=136 Identities=24% Similarity=0.215 Sum_probs=99.1
Q ss_pred CcccEEECCCCcCC-CCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhccccccccC
Q 039997 2 SALEILDLRDNYFS-GRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGN 80 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~~L~~~~ 80 (333)
++|++|++++|.++ +.+|..+.++++|++|++++|.++++ ..|..+++|++|++++|++++.+|..+..
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-------- 93 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEK-------- 93 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHH--------
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhh--------
Confidence 56788888888887 56777778888888888888888765 66777888888888888887555554433
Q ss_pred CccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCC-c
Q 039997 81 GDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDIS-S 159 (333)
Q Consensus 81 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~ 159 (333)
+++|+.|++++|++++... .
T Consensus 94 -----------------------------------------------------------l~~L~~L~Ls~N~l~~~~~~~ 114 (168)
T 2ell_A 94 -----------------------------------------------------------LPNLTHLNLSGNKLKDISTLE 114 (168)
T ss_dssp -----------------------------------------------------------CTTCCEEECBSSSCCSSGGGG
T ss_pred -----------------------------------------------------------CCCCCEEeccCCccCcchhHH
Confidence 3557778888888775433 6
Q ss_pred cccCccccceeecccccCCCCch---HHHhCCCCCCEEeccCCcccCCCC
Q 039997 160 EIGDLRNIHGLNLSHNFLSGSIP---ESFSNLKMIESLDLSHNKLNGQIP 206 (333)
Q Consensus 160 ~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~L~~N~l~~~~~ 206 (333)
.+..+++|+.|++++|.+++..+ ..+..+++|+.|++++|.+...+.
T Consensus 115 ~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 115 PLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp GGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred HHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence 67777788888888888776555 467777778788777777765443
No 97
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.79 E-value=8.6e-19 Score=166.15 Aligned_cols=180 Identities=19% Similarity=0.226 Sum_probs=134.8
Q ss_pred cccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhh-ccccccccCC
Q 039997 3 ALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCIT-NLLFWKVGNG 81 (333)
Q Consensus 3 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~-~L~~L~~~~n 81 (333)
+|+.|+|++|.|++ +|..+. ++|++|+|++|+|+. +| ..+++|++|++++|++++ +|. +. +|+.|++++|
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~~-ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~~L~~L~Ls~N 130 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALIS-LP---ELPASLEYLDACDNRLST-LPE-LPASLKHLDVDNN 130 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC-CCTTCCEEECCSS
T ss_pred CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCcc-cc---cccCCCCEEEccCCCCCC-cch-hhcCCCEEECCCC
Confidence 78999999999996 676553 789999999999994 45 457999999999999996 666 54 8889999999
Q ss_pred ccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCccc
Q 039997 82 DLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEI 161 (333)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 161 (333)
.+.+++. .. .....+.+ ..+.+..++. .+++|+.|+|++|++++ .|. |
T Consensus 131 ~l~~lp~--~l----------~~L~~L~L-----------------s~N~l~~lp~-~l~~L~~L~Ls~N~L~~-lp~-l 178 (571)
T 3cvr_A 131 QLTMLPE--LP----------ALLEYINA-----------------DNNQLTMLPE-LPTSLEVLSVRNNQLTF-LPE-L 178 (571)
T ss_dssp CCSCCCC--CC----------TTCCEEEC-----------------CSSCCSCCCC-CCTTCCEEECCSSCCSC-CCC-C
T ss_pred cCCCCCC--cC----------ccccEEeC-----------------CCCccCcCCC-cCCCcCEEECCCCCCCC-cch-h
Confidence 8887544 10 11111112 2222222222 25789999999999997 444 5
Q ss_pred cCccccceeecccccCCCCchHHHhCCCCC-------CEEeccCCcccCCCCCCCCCCCCCEEEcccCcCcccCC
Q 039997 162 GDLRNIHGLNLSHNFLSGSIPESFSNLKMI-------ESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCPIP 229 (333)
Q Consensus 162 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L-------~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 229 (333)
. ++|+.|+|++|+|+.++ . +.. +| +.|++++|.|+.+++.+..+++|+.|++++|++++..|
T Consensus 179 ~--~~L~~L~Ls~N~L~~lp-~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 179 P--ESLEALDVSTNLLESLP-A-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp C--TTCCEEECCSSCCSSCC-C-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred h--CCCCEEECcCCCCCchh-h-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence 5 89999999999999544 4 543 67 99999999999876667779999999999999987654
No 98
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.79 E-value=4.9e-18 Score=162.79 Aligned_cols=79 Identities=24% Similarity=0.092 Sum_probs=42.6
Q ss_pred ccccEEECCCCcccccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEEEcc
Q 039997 141 EYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVS 220 (333)
Q Consensus 141 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~ 220 (333)
++|+.|++++|++++++ ..+++|+.|+|++|+|+.+++ .+++|+.|++++|.++.+++.+..+++|+.|+++
T Consensus 221 ~~L~~L~Ls~N~L~~lp----~~l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~ 292 (622)
T 3g06_A 221 SGLKELIVSGNRLTSLP----VLPSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLE 292 (622)
T ss_dssp TTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECC
T ss_pred CCCCEEEccCCccCcCC----CCCCcCcEEECCCCCCCcCCc----ccccCcEEeCCCCCCCcCCHHHhhccccCEEEec
Confidence 44555555555555322 233555666666666553322 3455666666666665443355556666666666
Q ss_pred cCcCccc
Q 039997 221 YNNLSCP 227 (333)
Q Consensus 221 ~N~l~~~ 227 (333)
+|++++.
T Consensus 293 ~N~l~~~ 299 (622)
T 3g06_A 293 GNPLSER 299 (622)
T ss_dssp SCCCCHH
T ss_pred CCCCCCc
Confidence 6666544
No 99
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.78 E-value=6.9e-19 Score=163.34 Aligned_cols=221 Identities=16% Similarity=0.163 Sum_probs=114.8
Q ss_pred CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCC-------------CEEeCCCCcCCCCCCh
Q 039997 2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKL-------------SIMDLSHNRLNGSIPS 68 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L-------------~~LdLs~N~l~~~~p~ 68 (333)
++|++|++++|.+ +.+|..++++++|++|++++|.+.+..|..++.+.+| ++|++++|.++ .+|.
T Consensus 11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~-~lp~ 88 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-SLPE 88 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS-CCCS
T ss_pred ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccc-cCCC
Confidence 5799999999999 5899999999999999999999999999999988865 99999999998 4565
Q ss_pred hhhccccccccCCccccccccCCCCcccccccccCCCCCcCCCCCCCCcc---ccceEEEEeeccccccchhh-hhcccc
Q 039997 69 CITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTL---DTQVVVNFMTKNRYESYKGV-ILEYMA 144 (333)
Q Consensus 69 ~l~~L~~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~l~~L~ 144 (333)
...+++.|++++|.+.+++.... .+ ..+.++...+..+ ........+..+.+..++.. .+++|+
T Consensus 89 ~~~~L~~L~l~~n~l~~lp~~~~--~L----------~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~lp~~~~l~~L~ 156 (454)
T 1jl5_A 89 LPPHLESLVASCNSLTELPELPQ--SL----------KSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLK 156 (454)
T ss_dssp CCTTCSEEECCSSCCSSCCCCCT--TC----------CEEECCSSCCSCCCSCCTTCCEEECCSSCCSSCCCCTTCTTCC
T ss_pred CcCCCCEEEccCCcCCccccccC--CC----------cEEECCCCccCcccCCCCCCCEEECcCCCCCCCcccCCCCCCC
Confidence 66788899999998887653221 11 1111111111110 01122222222222222211 145566
Q ss_pred EEECCCCcccccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEEEcccCcC
Q 039997 145 GLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNL 224 (333)
Q Consensus 145 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l 224 (333)
+|++++|++++ .|.. .++|+.|++++|++++. | .++.+++|+.|++++|.+++++... ++|+.|++++|.+
T Consensus 157 ~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~l-~-~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~l~~n~l 227 (454)
T 1jl5_A 157 IIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEEL-P-ELQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNNIL 227 (454)
T ss_dssp EEECCSSCCSC-CCCC---CTTCCEEECCSSCCSSC-C-CCTTCTTCCEEECCSSCCSSCCCCC---TTCCEEECCSSCC
T ss_pred EEECCCCcCcc-cCCC---cccccEEECcCCcCCcC-c-cccCCCCCCEEECCCCcCCcCCCCc---CcccEEECcCCcC
Confidence 66666666654 2222 23566666666666643 3 3566666666666666666533321 3566666666666
Q ss_pred cccCCCCccccccCccccCCCC
Q 039997 225 SCPIPDKEQFSTFDESSYRGNL 246 (333)
Q Consensus 225 ~~~~~~~~~~~~l~~~~~~~n~ 246 (333)
+ ..|....+..++.+++.+|.
T Consensus 228 ~-~lp~~~~l~~L~~L~l~~N~ 248 (454)
T 1jl5_A 228 E-ELPELQNLPFLTTIYADNNL 248 (454)
T ss_dssp S-SCCCCTTCTTCCEEECCSSC
T ss_pred C-cccccCCCCCCCEEECCCCc
Confidence 6 33444445555566666554
No 100
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.78 E-value=9.1e-19 Score=166.01 Aligned_cols=165 Identities=24% Similarity=0.283 Sum_probs=121.1
Q ss_pred CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhccccccccCC
Q 039997 2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGNG 81 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~~L~~~~n 81 (333)
++|++|+|++|.|+ .+| ..+++|++|++++|+|++ +|. |.+ +|++|++++|++++ +|..+.+|+.|++++|
T Consensus 80 ~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~~l~~L~~L~Ls~N 150 (571)
T 3cvr_A 80 PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPELPALLEYINADNN 150 (571)
T ss_dssp TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCCCCTTCCEEECCSS
T ss_pred CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCCcCccccEEeCCCC
Confidence 57999999999999 577 457899999999999997 444 655 99999999999996 5557788999999999
Q ss_pred ccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCccc
Q 039997 82 DLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEI 161 (333)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 161 (333)
.+.+++... .....+. +..+.+..++. ..++|+.|+|++|+|+.+ |. |
T Consensus 151 ~l~~lp~~l------------~~L~~L~-----------------Ls~N~L~~lp~-l~~~L~~L~Ls~N~L~~l-p~-~ 198 (571)
T 3cvr_A 151 QLTMLPELP------------TSLEVLS-----------------VRNNQLTFLPE-LPESLEALDVSTNLLESL-PA-V 198 (571)
T ss_dssp CCSCCCCCC------------TTCCEEE-----------------CCSSCCSCCCC-CCTTCCEEECCSSCCSSC-CC-C
T ss_pred ccCcCCCcC------------CCcCEEE-----------------CCCCCCCCcch-hhCCCCEEECcCCCCCch-hh-H
Confidence 988754310 1111112 22222222222 126799999999999944 44 5
Q ss_pred cCcccc-------ceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCC
Q 039997 162 GDLRNI-------HGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTE 210 (333)
Q Consensus 162 ~~l~~L-------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~ 210 (333)
.. +| +.|+|++|+|+. +|..+..+++|+.|++++|.+++..| .+..
T Consensus 199 ~~--~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 199 PV--RNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp C----------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred HH--hhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 54 67 999999999995 55666679999999999999988665 4443
No 101
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.77 E-value=2.3e-18 Score=154.56 Aligned_cols=180 Identities=16% Similarity=0.089 Sum_probs=101.2
Q ss_pred CcccEEECCCCcCCCCCCccccCCcccceeecccccccc-ccchhhcCCCCCCE-EeCCCCcCCCCCChhhh---ccccc
Q 039997 2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQG-PIPHQLCQLRKLSI-MDLSHNRLNGSIPSCIT---NLLFW 76 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~f~~L~~L~~-LdLs~N~l~~~~p~~l~---~L~~L 76 (333)
+++++|+|++|.|+.+.+.+|.++++|++|+|++|++.+ +.+++|.++++++. ++++.|+++...|..|. +|+.|
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 467888888888886556678888888888888888754 44567788887765 55666888766565554 44555
Q ss_pred cccCCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhh----hhccccEEECCCCc
Q 039997 77 KVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGV----ILEYMAGLDLSSNE 152 (333)
Q Consensus 77 ~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~~L~~L~Ls~n~ 152 (333)
++.+|.+..+............ ............++.. ....++.|++++|+
T Consensus 110 ~l~~n~l~~~~~~~~~~~~~l~------------------------~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~ 165 (350)
T 4ay9_X 110 LISNTGIKHLPDVHKIHSLQKV------------------------LLDIQDNINIHTIERNSFVGLSFESVILWLNKNG 165 (350)
T ss_dssp EEEEECCSSCCCCTTCCBSSCE------------------------EEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC
T ss_pred cccccccccCCchhhcccchhh------------------------hhhhccccccccccccchhhcchhhhhhcccccc
Confidence 6666666554332221111110 0111111111111110 01235556666666
Q ss_pred ccccCCccccCccccceeecc-cccCCCCchHHHhCCCCCCEEeccCCcccCCCC
Q 039997 153 LTGDISSEIGDLRNIHGLNLS-HNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP 206 (333)
Q Consensus 153 l~~~~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 206 (333)
|+.+.+..|.. .+|+.++++ +|.++.+++++|+.+++|+.||+++|+++.+++
T Consensus 166 i~~i~~~~f~~-~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~ 219 (350)
T 4ay9_X 166 IQEIHNSAFNG-TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS 219 (350)
T ss_dssp CCEECTTSSTT-EEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS
T ss_pred ccCCChhhccc-cchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh
Confidence 66554444433 456666665 355555555556666666666666666665544
No 102
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.77 E-value=8.3e-19 Score=137.79 Aligned_cols=128 Identities=23% Similarity=0.242 Sum_probs=97.0
Q ss_pred CcccEEECCCCcCC-CCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhccccccccC
Q 039997 2 SALEILDLRDNYFS-GRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGN 80 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~~L~~~~ 80 (333)
++|++|++++|.++ +.+|..+..+++|++|++++|+++++ ..|..+++|++|++++|.+++.+|..+..
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-------- 86 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEK-------- 86 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHH--------
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhh--------
Confidence 56788888888887 66777788888888888888888766 66788888888888888887555554433
Q ss_pred CccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCccccc-CCc
Q 039997 81 GDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGD-ISS 159 (333)
Q Consensus 81 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~ 159 (333)
+++|++|++++|.+++. .+.
T Consensus 87 -----------------------------------------------------------l~~L~~L~ls~N~i~~~~~~~ 107 (149)
T 2je0_A 87 -----------------------------------------------------------CPNLTHLNLSGNKIKDLSTIE 107 (149)
T ss_dssp -----------------------------------------------------------CTTCCEEECTTSCCCSHHHHG
T ss_pred -----------------------------------------------------------CCCCCEEECCCCcCCChHHHH
Confidence 35577788888888764 236
Q ss_pred cccCccccceeecccccCCCCch---HHHhCCCCCCEEeccC
Q 039997 160 EIGDLRNIHGLNLSHNFLSGSIP---ESFSNLKMIESLDLSH 198 (333)
Q Consensus 160 ~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~L~~ 198 (333)
.+..+++|+.|++++|.+++..+ ..+..+++|+.||+++
T Consensus 108 ~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 108 PLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp GGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred HHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 77788888888888888886655 5677788888887753
No 103
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.77 E-value=1e-17 Score=160.53 Aligned_cols=218 Identities=20% Similarity=0.121 Sum_probs=141.3
Q ss_pred CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhccccccccCC
Q 039997 2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGNG 81 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~~L~~~~n 81 (333)
++|++|||++|.|+ .+|. .+++|++|++++|+++++.+ .+++|+.|++++|+++ .+|..+.+|+.|++++|
T Consensus 81 ~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~l~~----~l~~L~~L~L~~N~l~-~lp~~l~~L~~L~Ls~N 151 (622)
T 3g06_A 81 PELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTHLPA----LPSGLCKLWIFGNQLT-SLPVLPPGLQELSVSDN 151 (622)
T ss_dssp TTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCCCCC----CCTTCCEEECCSSCCS-CCCCCCTTCCEEECCSS
T ss_pred CCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCCCCC----CCCCcCEEECCCCCCC-cCCCCCCCCCEEECcCC
Confidence 45666666666666 3443 45667777777777764433 4567777777777776 45666677777777777
Q ss_pred ccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCccc
Q 039997 82 DLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEI 161 (333)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 161 (333)
.+.+++..... +.......+.... +. .....+....+..+.+..++.. +++|+.|++++|.++.+. .
T Consensus 152 ~l~~l~~~~~~--L~~L~L~~N~l~~--l~-----~~~~~L~~L~Ls~N~l~~l~~~-~~~L~~L~L~~N~l~~l~-~-- 218 (622)
T 3g06_A 152 QLASLPALPSE--LCKLWAYNNQLTS--LP-----MLPSGLQELSVSDNQLASLPTL-PSELYKLWAYNNRLTSLP-A-- 218 (622)
T ss_dssp CCSCCCCCCTT--CCEEECCSSCCSC--CC-----CCCTTCCEEECCSSCCSCCCCC-CTTCCEEECCSSCCSSCC-C--
T ss_pred cCCCcCCccCC--CCEEECCCCCCCC--Cc-----ccCCCCcEEECCCCCCCCCCCc-cchhhEEECcCCcccccC-C--
Confidence 77665432211 1111111111111 10 1112233344455555554432 578999999999999544 3
Q ss_pred cCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEEEcccCcCcccCCCCccccccCccc
Q 039997 162 GDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCPIPDKEQFSTFDESS 241 (333)
Q Consensus 162 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~l~~~~ 241 (333)
.+++|+.|++++|++++++ ..+++|+.|++++|.++.+++ .+++|+.|++++|.++...+....+..+..++
T Consensus 219 -~~~~L~~L~Ls~N~L~~lp----~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~ 290 (622)
T 3g06_A 219 -LPSGLKELIVSGNRLTSLP----VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVN 290 (622)
T ss_dssp -CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEE
T ss_pred -CCCCCCEEEccCCccCcCC----CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCCcCCHHHhhccccCEEE
Confidence 2478999999999999654 457899999999999997665 56889999999999995433334566777788
Q ss_pred cCCCCCCC
Q 039997 242 YRGNLNLC 249 (333)
Q Consensus 242 ~~~n~~~c 249 (333)
+.+|+...
T Consensus 291 L~~N~l~~ 298 (622)
T 3g06_A 291 LEGNPLSE 298 (622)
T ss_dssp CCSCCCCH
T ss_pred ecCCCCCC
Confidence 88887654
No 104
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.77 E-value=2e-17 Score=153.50 Aligned_cols=77 Identities=22% Similarity=0.317 Sum_probs=41.9
Q ss_pred CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCCh--hhhcccccccc
Q 039997 2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPS--CITNLLFWKVG 79 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~--~l~~L~~L~~~ 79 (333)
++|++|++++|.+++ +| .|+++++|++|++++|+++++ |.. ..+|++|++++|++++ +|. .+.+|+.|++.
T Consensus 131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~l-p~~---~~~L~~L~L~~n~l~~-l~~~~~l~~L~~L~l~ 203 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKKL-PDL---PPSLEFIAAGNNQLEE-LPELQNLPFLTAIYAD 203 (454)
T ss_dssp TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSCC-CCC---CTTCCEEECCSSCCSS-CCCCTTCTTCCEEECC
T ss_pred CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCccc-CCC---cccccEEECcCCcCCc-CccccCCCCCCEEECC
Confidence 456777777777764 55 477777777777777776642 221 2355555555555543 231 12333344445
Q ss_pred CCcccc
Q 039997 80 NGDLYG 85 (333)
Q Consensus 80 ~n~~~~ 85 (333)
+|.+.+
T Consensus 204 ~N~l~~ 209 (454)
T 1jl5_A 204 NNSLKK 209 (454)
T ss_dssp SSCCSS
T ss_pred CCcCCc
Confidence 554444
No 105
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.76 E-value=4.9e-18 Score=139.39 Aligned_cols=129 Identities=24% Similarity=0.369 Sum_probs=114.5
Q ss_pred cEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhccccccccCCccc
Q 039997 5 EILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGNGDLY 84 (333)
Q Consensus 5 ~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~~L~~~~n~~~ 84 (333)
+++++++|.++ .+|..+. ++|++|++++|+|+ .+|..|.++++|+.|++++|++++..+..|.+
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~------------ 76 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSN------------ 76 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTT------------
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccC------------
Confidence 57999999999 5776654 68999999999999 55689999999999999999999666655654
Q ss_pred cccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCccccCc
Q 039997 85 GLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDL 164 (333)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 164 (333)
+++|++|+|++|+++++.+..|.++
T Consensus 77 -------------------------------------------------------l~~L~~L~Ls~N~l~~i~~~~f~~l 101 (193)
T 2wfh_A 77 -------------------------------------------------------MTQLLTLILSYNRLRCIPPRTFDGL 101 (193)
T ss_dssp -------------------------------------------------------CTTCCEEECCSSCCCBCCTTTTTTC
T ss_pred -------------------------------------------------------CCCCCEEECCCCccCEeCHHHhCCC
Confidence 4668899999999999999999999
Q ss_pred cccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCC
Q 039997 165 RNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQ 204 (333)
Q Consensus 165 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 204 (333)
++|+.|+|++|.|+.+.+..|..+++|+.|++++|.+...
T Consensus 102 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~ 141 (193)
T 2wfh_A 102 KSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCD 141 (193)
T ss_dssp TTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred CCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecC
Confidence 9999999999999988888899999999999999998753
No 106
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.75 E-value=7.7e-19 Score=151.34 Aligned_cols=169 Identities=18% Similarity=0.159 Sum_probs=135.0
Q ss_pred CCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCC--hhhhccccccccCCccccccccCCCCcccccccc
Q 039997 24 EHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIP--SCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNY 101 (333)
Q Consensus 24 ~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p--~~l~~L~~L~~~~n~~~~~~~~~~~~~~~~~~~~ 101 (333)
++.++..+++++|.++++. .+..+++|+.|++++|.++ .+| ..+.+|+.|++++|.+.++.. ..
T Consensus 17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~~l~~l~~L~~L~L~~N~i~~~~~-l~---------- 82 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLAGMQFFTNLKELHLSHNQISDLSP-LK---------- 82 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCTTGGGCTTCCEEECCSSCCCCCGG-GT----------
T ss_pred HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cchHHhhCCCCCEEECCCCccCCChh-hc----------
Confidence 5678899999999998655 5789999999999999998 444 234567777778877766432 00
Q ss_pred cCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCccccCccccceeecccccCCCCc
Q 039997 102 YNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSI 181 (333)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 181 (333)
.+++|+.|++++|++++..+.. . ++|+.|++++|++++.
T Consensus 83 -------------------------------------~l~~L~~L~L~~N~l~~l~~~~--~-~~L~~L~L~~N~l~~~- 121 (263)
T 1xeu_A 83 -------------------------------------DLTKLEELSVNRNRLKNLNGIP--S-ACLSRLFLDNNELRDT- 121 (263)
T ss_dssp -------------------------------------TCSSCCEEECCSSCCSCCTTCC--C-SSCCEEECCSSCCSBS-
T ss_pred -------------------------------------cCCCCCEEECCCCccCCcCccc--c-CcccEEEccCCccCCC-
Confidence 0578999999999999754432 3 8999999999999965
Q ss_pred hHHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEEEcccCcCcccCCCCccccccCccccCCCCCCCC
Q 039997 182 PESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCPIPDKEQFSTFDESSYRGNLNLCC 250 (333)
Q Consensus 182 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~l~~~~~~~n~~~c~ 250 (333)
+ .+..+++|+.|++++|+++++ +.+..+++|+.|++++|.+++. +....+..++.+++.+|+..+.
T Consensus 122 ~-~l~~l~~L~~L~Ls~N~i~~~-~~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 122 D-SLIHLKNLEILSIRNNKLKSI-VMLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp G-GGTTCTTCCEEECTTSCCCBC-GGGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEEECC
T ss_pred h-hhcCcccccEEECCCCcCCCC-hHHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcccCC
Confidence 3 589999999999999999986 4678899999999999999877 4455667777888888876554
No 107
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.75 E-value=8.7e-18 Score=135.91 Aligned_cols=92 Identities=24% Similarity=0.295 Sum_probs=75.0
Q ss_pred ccccEEECCCCcccccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEc
Q 039997 141 EYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDV 219 (333)
Q Consensus 141 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l 219 (333)
++|++|++++|++++..+..|..+++|+.|++++|++++.++..+..+++|+.|++++|.++++++ .+..+++|+.|++
T Consensus 52 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 131 (177)
T 2o6r_A 52 TQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWL 131 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred ccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEe
Confidence 456677777777776666777888888888888888887777778888889999999999888777 6788899999999
Q ss_pred ccCcCcccCCCCc
Q 039997 220 SYNNLSCPIPDKE 232 (333)
Q Consensus 220 ~~N~l~~~~~~~~ 232 (333)
++|++.|.|+...
T Consensus 132 ~~N~~~~~~~~l~ 144 (177)
T 2o6r_A 132 HTNPWDCSCPRID 144 (177)
T ss_dssp CSSCBCCCHHHHH
T ss_pred cCCCeeccCccHH
Confidence 9999999887543
No 108
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.75 E-value=1.7e-17 Score=134.12 Aligned_cols=133 Identities=22% Similarity=0.242 Sum_probs=115.1
Q ss_pred ccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhccccccccCCcc
Q 039997 4 LEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGNGDL 83 (333)
Q Consensus 4 L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~~L~~~~n~~ 83 (333)
.+.+++++|.++ .+|..+. ++|++|++++|+++++.+..|..+++|++|++++|++++..+..+..
T Consensus 9 ~~~l~~~~~~l~-~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~----------- 74 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDK----------- 74 (177)
T ss_dssp TTEEECCSSCCS-SCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTT-----------
T ss_pred CCEEEecCCCCc-cCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccC-----------
Confidence 468999999998 5665544 79999999999999888888999999999999999998554444433
Q ss_pred ccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCccccC
Q 039997 84 YGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGD 163 (333)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 163 (333)
+++|+.|++++|++++..+..|..
T Consensus 75 --------------------------------------------------------l~~L~~L~l~~N~l~~~~~~~~~~ 98 (177)
T 2o6r_A 75 --------------------------------------------------------LTKLTILYLHENKLQSLPNGVFDK 98 (177)
T ss_dssp --------------------------------------------------------CTTCCEEECCSSCCCCCCTTTTTT
T ss_pred --------------------------------------------------------CCccCEEECCCCCccccCHHHhhC
Confidence 467889999999999888888999
Q ss_pred ccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC
Q 039997 164 LRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP 206 (333)
Q Consensus 164 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 206 (333)
+++|+.|++++|.+++.++..+..+++|+.|++++|.+.+..+
T Consensus 99 l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 99 LTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 9999999999999998888888999999999999999986543
No 109
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.74 E-value=2.2e-17 Score=148.20 Aligned_cols=196 Identities=15% Similarity=0.101 Sum_probs=138.7
Q ss_pred cEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCC-hhhhccccc----ccc
Q 039997 5 EILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIP-SCITNLLFW----KVG 79 (333)
Q Consensus 5 ~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p-~~l~~L~~L----~~~ 79 (333)
++++.++++++ .+|..+. +++++|+|++|+|+.+.+++|.++++|++|+|++|++.+.+| ..|.+++.+ ...
T Consensus 12 ~~v~C~~~~Lt-~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 57889999999 6787664 689999999999998888899999999999999999865555 456666543 233
Q ss_pred CCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhh---hhccccEEECCC-Ccccc
Q 039997 80 NGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGV---ILEYMAGLDLSS-NELTG 155 (333)
Q Consensus 80 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~L~~L~Ls~-n~l~~ 155 (333)
.|.+..+..... ..+.. +....+..+.+..++.. ....+..|++.+ +++..
T Consensus 89 ~N~l~~l~~~~f------------------------~~l~~-L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~ 143 (350)
T 4ay9_X 89 ANNLLYINPEAF------------------------QNLPN-LQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHT 143 (350)
T ss_dssp ETTCCEECTTSB------------------------CCCTT-CCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCE
T ss_pred CCcccccCchhh------------------------hhccc-cccccccccccccCCchhhcccchhhhhhhcccccccc
Confidence 455554322110 00000 11111222222222211 134577888854 67887
Q ss_pred cCCccccCcc-ccceeecccccCCCCchHHHhCCCCCCEEeccC-CcccCCCC-CCCCCCCCCEEEcccCcCcccCC
Q 039997 156 DISSEIGDLR-NIHGLNLSHNFLSGSIPESFSNLKMIESLDLSH-NKLNGQIP-QLTELHSLSKFDVSYNNLSCPIP 229 (333)
Q Consensus 156 ~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~ 229 (333)
+.+..|..+. .++.|+|++|+|+.+.+..| ...+|+.+++++ |.++.+++ .|.++++|+.|++++|.++...+
T Consensus 144 l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~ 219 (350)
T 4ay9_X 144 IERNSFVGLSFESVILWLNKNGIQEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS 219 (350)
T ss_dssp ECTTSSTTSBSSCEEEECCSSCCCEECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS
T ss_pred ccccchhhcchhhhhhccccccccCCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh
Confidence 8888888876 68999999999997666655 456799999975 78888777 78999999999999999986543
No 110
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.74 E-value=3.1e-18 Score=149.76 Aligned_cols=185 Identities=18% Similarity=0.242 Sum_probs=144.6
Q ss_pred EECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCC-hhhhccccccccCCcccc
Q 039997 7 LDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIP-SCITNLLFWKVGNGDLYG 85 (333)
Q Consensus 7 L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p-~~l~~L~~L~~~~n~~~~ 85 (333)
+.++.+.+++. ..+..+++|++|++++|.++.+ + .+..+++|+.|++++|++++..+ ..+.+|+.|++.+|.+..
T Consensus 29 ~~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~ 104 (291)
T 1h6t_A 29 DNLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD 104 (291)
T ss_dssp HHTTCSCTTSE--ECHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC
T ss_pred HHhcCCCcccc--cchhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCC
Confidence 45666777643 3456789999999999999866 3 48899999999999999985443 234556667777776655
Q ss_pred ccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCccccCcc
Q 039997 86 LVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLR 165 (333)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 165 (333)
+.... .+++|++|++++|++++. ..+..++
T Consensus 105 ~~~l~------------------------------------------------~l~~L~~L~L~~n~i~~~--~~l~~l~ 134 (291)
T 1h6t_A 105 LSSLK------------------------------------------------DLKKLKSLSLEHNGISDI--NGLVHLP 134 (291)
T ss_dssp GGGGT------------------------------------------------TCTTCCEEECTTSCCCCC--GGGGGCT
T ss_pred Chhhc------------------------------------------------cCCCCCEEECCCCcCCCC--hhhcCCC
Confidence 32100 057899999999999965 5688999
Q ss_pred ccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEEEcccCcCcccCCCCccccccCccccCCC
Q 039997 166 NIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCPIPDKEQFSTFDESSYRGN 245 (333)
Q Consensus 166 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~l~~~~~~~n 245 (333)
+|+.|++++|++++. ..+..+++|+.|++++|.+++..+ +..+++|+.|++++|.++.. +....+..++.+++.+|
T Consensus 135 ~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l-~~l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 135 QLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQ 210 (291)
T ss_dssp TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBC-GGGTTCTTCSEEEEEEE
T ss_pred CCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCC-hhhccCCCCCEEECcCC
Confidence 999999999999976 578999999999999999998776 88899999999999999864 33455666777777777
Q ss_pred CCCC
Q 039997 246 LNLC 249 (333)
Q Consensus 246 ~~~c 249 (333)
+..+
T Consensus 211 ~i~~ 214 (291)
T 1h6t_A 211 ECLN 214 (291)
T ss_dssp EEEC
T ss_pred cccC
Confidence 6443
No 111
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.74 E-value=3.2e-20 Score=176.51 Aligned_cols=89 Identities=26% Similarity=0.302 Sum_probs=73.4
Q ss_pred hccccEEECCCCcccccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCC-C-CCCCCCCCCEE
Q 039997 140 LEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI-P-QLTELHSLSKF 217 (333)
Q Consensus 140 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~-~~~~l~~L~~L 217 (333)
+++|+.|+|++|.++ ..|..++++++|+.|+|++|+|++ +| .++.+++|+.|+|++|.+++.. | .+..+++|+.|
T Consensus 462 l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L 538 (567)
T 1dce_A 462 LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLL 538 (567)
T ss_dssp GTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEE
T ss_pred cccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEE
Confidence 577888888888888 667788888888888888888886 45 6888888888888888888885 5 88888888888
Q ss_pred EcccCcCcccCCCC
Q 039997 218 DVSYNNLSCPIPDK 231 (333)
Q Consensus 218 ~l~~N~l~~~~~~~ 231 (333)
++++|++++.++..
T Consensus 539 ~L~~N~l~~~~~~~ 552 (567)
T 1dce_A 539 NLQGNSLCQEEGIQ 552 (567)
T ss_dssp ECTTSGGGGSSSCT
T ss_pred EecCCcCCCCccHH
Confidence 88888888776544
No 112
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.73 E-value=1.1e-18 Score=157.56 Aligned_cols=231 Identities=19% Similarity=0.205 Sum_probs=145.9
Q ss_pred CcccEEECCCCcCCCCCC----ccccCCc-ccceeeccccccccccchhhcCC-----CCCCEEeCCCCcCCCCCChh--
Q 039997 2 SALEILDLRDNYFSGRIP----YGINEHS-NLRALLLKGNYLQGPIPHQLCQL-----RKLSIMDLSHNRLNGSIPSC-- 69 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~~~~----~~~~~l~-~L~~L~L~~N~i~~~~~~~f~~L-----~~L~~LdLs~N~l~~~~p~~-- 69 (333)
++|++|||++|.|++..+ ..|.+++ +|++|+|++|++++..+..|..+ ++|++|++++|.++...+..
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 101 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV 101 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence 469999999999997666 7788888 89999999999998888888775 99999999999998665542
Q ss_pred --h----hccccccccCCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhh--h-
Q 039997 70 --I----TNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVI--L- 140 (333)
Q Consensus 70 --l----~~L~~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l- 140 (333)
+ .+|+.|++++|.+.......- .............+.++.+.+.. .....+.... .
T Consensus 102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l---~~~l~~~~~~L~~L~Ls~N~l~~------------~~~~~l~~~l~~~~ 166 (362)
T 3goz_A 102 KTLAAIPFTITVLDLGWNDFSSKSSSEF---KQAFSNLPASITSLNLRGNDLGI------------KSSDELIQILAAIP 166 (362)
T ss_dssp HHHHTSCTTCCEEECCSSCGGGSCHHHH---HHHHTTSCTTCCEEECTTSCGGG------------SCHHHHHHHHHTSC
T ss_pred HHHHhCCCCccEEECcCCcCCcHHHHHH---HHHHHhCCCceeEEEccCCcCCH------------HHHHHHHHHHhcCC
Confidence 2 467788888888765321100 00000000111111222111110 0000111110 2
Q ss_pred ccccEEECCCCcccccCCcccc----Cc-cccceeecccccCCCC----chHHHhC-CCCCCEEeccCCcccCCCC----
Q 039997 141 EYMAGLDLSSNELTGDISSEIG----DL-RNIHGLNLSHNFLSGS----IPESFSN-LKMIESLDLSHNKLNGQIP---- 206 (333)
Q Consensus 141 ~~L~~L~Ls~n~l~~~~~~~~~----~l-~~L~~L~Ls~N~l~~~----~~~~~~~-l~~L~~L~L~~N~l~~~~~---- 206 (333)
.+|++|+|++|++++..+..+. .. ++|+.|+|++|.++.. .+..+.. .++|+.|++++|.++....
T Consensus 167 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 246 (362)
T 3goz_A 167 ANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLK 246 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHH
T ss_pred ccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHH
Confidence 3788888888888866654433 34 5888888888888853 3445555 3588888888888876543
Q ss_pred -CCCCCCCCCEEEcccCcCcccCC--------CCccccccCccccCCCCC
Q 039997 207 -QLTELHSLSKFDVSYNNLSCPIP--------DKEQFSTFDESSYRGNLN 247 (333)
Q Consensus 207 -~~~~l~~L~~L~l~~N~l~~~~~--------~~~~~~~l~~~~~~~n~~ 247 (333)
.+..+++|+.|++++|.+....+ .......+..+++.+|..
T Consensus 247 ~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l 296 (362)
T 3goz_A 247 LLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296 (362)
T ss_dssp HTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBC
T ss_pred HHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcC
Confidence 34667788888888887442221 112344455566666654
No 113
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.73 E-value=6.3e-18 Score=161.74 Aligned_cols=186 Identities=18% Similarity=0.240 Sum_probs=146.0
Q ss_pred ccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCC-hhhhccccccccCCc
Q 039997 4 LEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIP-SCITNLLFWKVGNGD 82 (333)
Q Consensus 4 L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p-~~l~~L~~L~~~~n~ 82 (333)
+..++++.+.+++.. .+..+++|+.|++++|.|+.+. .|..+++|+.|+|++|++++..| ..+.+|+.|++.+|.
T Consensus 23 l~~l~l~~~~i~~~~--~~~~L~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~ 98 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENK 98 (605)
T ss_dssp HHHHHTTCSCTTSEE--CHHHHTTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSC
T ss_pred HHHHhccCCCccccc--chhcCCCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCC
Confidence 344567778877543 3578899999999999998553 58999999999999999985543 234556666777776
Q ss_pred cccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCcccc
Q 039997 83 LYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIG 162 (333)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 162 (333)
+..+... . .+++|+.|+|++|.+++. ..+.
T Consensus 99 l~~l~~l----------------------------------------------~--~l~~L~~L~Ls~N~l~~l--~~l~ 128 (605)
T 1m9s_A 99 IKDLSSL----------------------------------------------K--DLKKLKSLSLEHNGISDI--NGLV 128 (605)
T ss_dssp CCCCTTS----------------------------------------------T--TCTTCCEEECTTSCCCCC--GGGG
T ss_pred CCCChhh----------------------------------------------c--cCCCCCEEEecCCCCCCC--cccc
Confidence 6552110 0 057899999999999964 4588
Q ss_pred CccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEEEcccCcCcccCCCCccccccCcccc
Q 039997 163 DLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKFDVSYNNLSCPIPDKEQFSTFDESSY 242 (333)
Q Consensus 163 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~l~~~~~ 242 (333)
.+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+++..+ +..+++|+.|++++|.++.. +....+..+..+.+
T Consensus 129 ~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l-~~l~~l~~L~~L~L 204 (605)
T 1m9s_A 129 HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLEL 204 (605)
T ss_dssp GCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBC-GGGTTCTTCSEEEC
T ss_pred CCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCC-hHHccCCCCCEEEc
Confidence 999999999999999976 578999999999999999998777 88899999999999999865 44445666777777
Q ss_pred CCCCC
Q 039997 243 RGNLN 247 (333)
Q Consensus 243 ~~n~~ 247 (333)
.+|+.
T Consensus 205 ~~N~l 209 (605)
T 1m9s_A 205 FSQEC 209 (605)
T ss_dssp CSEEE
T ss_pred cCCcC
Confidence 66644
No 114
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.73 E-value=3.5e-19 Score=160.69 Aligned_cols=221 Identities=17% Similarity=0.128 Sum_probs=146.6
Q ss_pred EEECCCCcCCCCCCccccCCcccceeeccccccccccc----hhhcCCC-CCCEEeCCCCcCCCCCChhh--------hc
Q 039997 6 ILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIP----HQLCQLR-KLSIMDLSHNRLNGSIPSCI--------TN 72 (333)
Q Consensus 6 ~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~----~~f~~L~-~L~~LdLs~N~l~~~~p~~l--------~~ 72 (333)
.+++++|.+++.+|..+...++|++|+|++|.+++..+ +.|..++ +|++|++++|+++...+..+ .+
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 47899999998888777777779999999999998887 8899999 99999999999987666544 56
Q ss_pred cccccccCCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhh--------hcccc
Q 039997 73 LLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVI--------LEYMA 144 (333)
Q Consensus 73 L~~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------l~~L~ 144 (333)
++.|++++|.+.......- .............+. +..+.+....... ..+|+
T Consensus 82 L~~L~Ls~n~l~~~~~~~l---~~~l~~~~~~L~~L~-----------------Ls~N~l~~~~~~~l~~~l~~~~~~L~ 141 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDEL---VKTLAAIPFTITVLD-----------------LGWNDFSSKSSSEFKQAFSNLPASIT 141 (362)
T ss_dssp CCEEECCSSCGGGSCHHHH---HHHHHTSCTTCCEEE-----------------CCSSCGGGSCHHHHHHHHTTSCTTCC
T ss_pred ccEEECcCCcCChHHHHHH---HHHHHhCCCCccEEE-----------------CcCCcCCcHHHHHHHHHHHhCCCcee
Confidence 7788888888765321100 000000001111111 2222222211111 24899
Q ss_pred EEECCCCcccccCC----ccccCcc-ccceeecccccCCCCchHHHh----CC-CCCCEEeccCCcccCCC-----CCCC
Q 039997 145 GLDLSSNELTGDIS----SEIGDLR-NIHGLNLSHNFLSGSIPESFS----NL-KMIESLDLSHNKLNGQI-----PQLT 209 (333)
Q Consensus 145 ~L~Ls~n~l~~~~~----~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~----~l-~~L~~L~L~~N~l~~~~-----~~~~ 209 (333)
+|+|++|.+++... ..+..++ +|++|+|++|++++..+..+. .. ++|+.||+++|.++... ..+.
T Consensus 142 ~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~ 221 (362)
T 3goz_A 142 SLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFS 221 (362)
T ss_dssp EEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHH
T ss_pred EEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHh
Confidence 99999999985443 3334555 899999999999877665444 44 58999999999988732 2333
Q ss_pred C-CCCCCEEEcccCcCcccCCC-----CccccccCccccCCCC
Q 039997 210 E-LHSLSKFDVSYNNLSCPIPD-----KEQFSTFDESSYRGNL 246 (333)
Q Consensus 210 ~-l~~L~~L~l~~N~l~~~~~~-----~~~~~~l~~~~~~~n~ 246 (333)
. .++|+.|++++|.++...+. ......++.+++.+|.
T Consensus 222 ~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 222 SIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp HSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred cCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence 3 35899999999998754221 1233455566665553
No 115
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=1.3e-17 Score=137.41 Aligned_cols=153 Identities=16% Similarity=0.222 Sum_probs=126.1
Q ss_pred cccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhccccccccCCccccccccCCCCccccccc
Q 039997 21 GINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYN 100 (333)
Q Consensus 21 ~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~~L~~~~n~~~~~~~~~~~~~~~~~~~ 100 (333)
+...+++|++|++++|.++.+ | .+..+++|++|++++|.++. + ..+..
T Consensus 39 ~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~l~~n~~~~-~-~~l~~---------------------------- 86 (197)
T 4ezg_A 39 TEAQMNSLTYITLANINVTDL-T-GIEYAHNIKDLTINNIHATN-Y-NPISG---------------------------- 86 (197)
T ss_dssp BHHHHHTCCEEEEESSCCSCC-T-TGGGCTTCSEEEEESCCCSC-C-GGGTT----------------------------
T ss_pred ChhhcCCccEEeccCCCccCh-H-HHhcCCCCCEEEccCCCCCc-c-hhhhc----------------------------
Confidence 446778999999999999844 4 58889999999999997652 2 22322
Q ss_pred ccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCccccCccccceeecccccCCCC
Q 039997 101 YYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGS 180 (333)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 180 (333)
+++|++|++++|++++..+..+..+++|+.|++++|++++.
T Consensus 87 ---------------------------------------l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~ 127 (197)
T 4ezg_A 87 ---------------------------------------LSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDS 127 (197)
T ss_dssp ---------------------------------------CTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGG
T ss_pred ---------------------------------------CCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcH
Confidence 46789999999999988888999999999999999999987
Q ss_pred chHHHhCCCCCCEEeccCCc-ccCCCCCCCCCCCCCEEEcccCcCcccCCCCccccccCccccCCCC
Q 039997 181 IPESFSNLKMIESLDLSHNK-LNGQIPQLTELHSLSKFDVSYNNLSCPIPDKEQFSTFDESSYRGNL 246 (333)
Q Consensus 181 ~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~l~~~~~~~n~ 246 (333)
.+..++.+++|+.|++++|. ++.+ +.+..+++|+.|++++|.++.. +....+..++.+++.+|+
T Consensus 128 ~~~~l~~l~~L~~L~L~~n~~i~~~-~~l~~l~~L~~L~l~~n~i~~~-~~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 128 ILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDY-RGIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp GHHHHTTCSSCCEEECCSCTBCCCC-GGGGGCSSCCEEECTTBCCCCC-TTGGGCSSCCEEEECBC-
T ss_pred hHHHHhhCCCCCEEEccCCCCcccc-HhhcCCCCCCEEECCCCCCcCh-HHhccCCCCCEEEeeCcc
Confidence 88999999999999999998 6654 4788899999999999999864 344566777777777775
No 116
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.72 E-value=5.4e-19 Score=160.82 Aligned_cols=212 Identities=18% Similarity=0.223 Sum_probs=141.0
Q ss_pred CcccEEECCCCcCC---CCCCccc-------cCCcccceeecccccccc----ccchhhcCCCCCCEEeCCCCcCCCCCC
Q 039997 2 SALEILDLRDNYFS---GRIPYGI-------NEHSNLRALLLKGNYLQG----PIPHQLCQLRKLSIMDLSHNRLNGSIP 67 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~---~~~~~~~-------~~l~~L~~L~L~~N~i~~----~~~~~f~~L~~L~~LdLs~N~l~~~~p 67 (333)
++|++|+|++|.+. +.+|..+ ..+++|++|+|++|.++. ..|..+..+++|++|+|++|.++...+
T Consensus 60 ~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~ 139 (386)
T 2ca6_A 60 KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAG 139 (386)
T ss_dssp TTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHH
T ss_pred CCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHH
Confidence 68999999996544 4455554 688999999999999986 467788999999999999999863322
Q ss_pred h----hh------------hccccccccCCcccc--ccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeec
Q 039997 68 S----CI------------TNLLFWKVGNGDLYG--LVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTK 129 (333)
Q Consensus 68 ~----~l------------~~L~~L~~~~n~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (333)
. .+ .+|+.|++++|.+.. +..... ..........+.+..+.+..... .
T Consensus 140 ~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~------~l~~~~~L~~L~L~~n~l~~~g~--------~ 205 (386)
T 2ca6_A 140 AKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK------TFQSHRLLHTVKMVQNGIRPEGI--------E 205 (386)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH------HHHHCTTCCEEECCSSCCCHHHH--------H
T ss_pred HHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHH------HHHhCCCcCEEECcCCCCCHhHH--------H
Confidence 2 22 577788888887752 110000 00001111112222211110000 0
Q ss_pred cccc-cchhhhhccccEEECCCCccc----ccCCccccCccccceeecccccCCCC----chHHHhC--CCCCCEEeccC
Q 039997 130 NRYE-SYKGVILEYMAGLDLSSNELT----GDISSEIGDLRNIHGLNLSHNFLSGS----IPESFSN--LKMIESLDLSH 198 (333)
Q Consensus 130 ~~~~-~~~~~~l~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~--l~~L~~L~L~~ 198 (333)
.... .+. .+++|+.|+|++|.++ ...|..+..+++|+.|+|++|.+++. ++..+.. +++|+.|++++
T Consensus 206 ~l~~~~l~--~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~ 283 (386)
T 2ca6_A 206 HLLLEGLA--YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQY 283 (386)
T ss_dssp HHHHTTGG--GCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCS
T ss_pred HHHHHHhh--cCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcC
Confidence 0000 111 1578999999999986 45677888889999999999998865 3555644 88999999999
Q ss_pred CcccC-----CCCCC-CCCCCCCEEEcccCcCcccCC
Q 039997 199 NKLNG-----QIPQL-TELHSLSKFDVSYNNLSCPIP 229 (333)
Q Consensus 199 N~l~~-----~~~~~-~~l~~L~~L~l~~N~l~~~~~ 229 (333)
|.++. +...+ .++++|+.|++++|++++..+
T Consensus 284 n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 284 NEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp SCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred CcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 99987 33344 567899999999999986653
No 117
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.72 E-value=8.1e-18 Score=134.88 Aligned_cols=135 Identities=24% Similarity=0.251 Sum_probs=112.9
Q ss_pred Ccccceeeccccccc-cccchhhcCCCCCCEEeCCCCcCCCCCChhhhccccccccCCccccccccCCCCcccccccccC
Q 039997 25 HSNLRALLLKGNYLQ-GPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYN 103 (333)
Q Consensus 25 l~~L~~L~L~~N~i~-~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~~L~~~~n~~~~~~~~~~~~~~~~~~~~~~ 103 (333)
.++|++|++++|+++ +..|..+..+++|+.|++++|.++.. ..+..
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~------------------------------- 69 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPK------------------------------- 69 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCC-------------------------------
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhcc-------------------------------
Confidence 378999999999997 56677788899999999999998743 22222
Q ss_pred CCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCccccCccccceeecccccCCCCch-
Q 039997 104 STVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIP- 182 (333)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~- 182 (333)
+++|+.|++++|++++..|..+.++++|+.|++++|.+++...
T Consensus 70 ------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 113 (168)
T 2ell_A 70 ------------------------------------LPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTL 113 (168)
T ss_dssp ------------------------------------CSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGG
T ss_pred ------------------------------------CCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhH
Confidence 4678899999999998788888889999999999999997543
Q ss_pred HHHhCCCCCCEEeccCCcccCCCC----CCCCCCCCCEEEcccCcCcccC
Q 039997 183 ESFSNLKMIESLDLSHNKLNGQIP----QLTELHSLSKFDVSYNNLSCPI 228 (333)
Q Consensus 183 ~~~~~l~~L~~L~L~~N~l~~~~~----~~~~l~~L~~L~l~~N~l~~~~ 228 (333)
..+..+++|+.|++++|.+++.++ .+..+++|+.|++++|.+....
T Consensus 114 ~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 114 EPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp GGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred HHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence 788999999999999999998877 6888999999999999876543
No 118
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.72 E-value=4.5e-19 Score=161.34 Aligned_cols=237 Identities=14% Similarity=0.171 Sum_probs=156.8
Q ss_pred CCcccEEECCCCcCCCCCC----ccccCCcccceeeccccccc---cccchhh-------cCCCCCCEEeCCCCcCCCC-
Q 039997 1 DSALEILDLRDNYFSGRIP----YGINEHSNLRALLLKGNYLQ---GPIPHQL-------CQLRKLSIMDLSHNRLNGS- 65 (333)
Q Consensus 1 ~~~L~~L~Ls~N~i~~~~~----~~~~~l~~L~~L~L~~N~i~---~~~~~~f-------~~L~~L~~LdLs~N~l~~~- 65 (333)
.++|++|+|++|.|+...+ ..+..+++|++|+|++|.+. +..|..+ ..+++|++|+|++|.++..
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 110 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 110 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence 3679999999999986533 44778999999999997554 4445444 7899999999999999862
Q ss_pred ---CChhh---hccccccccCCccccccccCCCCccccc-c----cccCCCCCcCCCCCCCCccccceEEEEeecccccc
Q 039997 66 ---IPSCI---TNLLFWKVGNGDLYGLVERGRDFDLEDI-Y----NYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYES 134 (333)
Q Consensus 66 ---~p~~l---~~L~~L~~~~n~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (333)
+|..+ .+|+.|++.+|.+.......-....... . ........+.++.+.+.. .....
T Consensus 111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~------------~~~~~ 178 (386)
T 2ca6_A 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN------------GSMKE 178 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG------------GGHHH
T ss_pred HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc------------HHHHH
Confidence 45444 4566777788876432110000000000 0 000111122222221110 00000
Q ss_pred chhh--hhccccEEECCCCcccc-----cCCccccCccccceeecccccCC----CCchHHHhCCCCCCEEeccCCcccC
Q 039997 135 YKGV--ILEYMAGLDLSSNELTG-----DISSEIGDLRNIHGLNLSHNFLS----GSIPESFSNLKMIESLDLSHNKLNG 203 (333)
Q Consensus 135 ~~~~--~l~~L~~L~Ls~n~l~~-----~~~~~~~~l~~L~~L~Ls~N~l~----~~~~~~~~~l~~L~~L~L~~N~l~~ 203 (333)
+... .+++|++|++++|+++. ..+..+..+++|+.|+|++|.++ ...|..+..+++|+.|++++|.++.
T Consensus 179 l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~ 258 (386)
T 2ca6_A 179 WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSA 258 (386)
T ss_dssp HHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCH
T ss_pred HHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCch
Confidence 0010 15689999999999983 34457889999999999999996 4567789999999999999999986
Q ss_pred C----CC-CC--CCCCCCCEEEcccCcCcc----cCCCC--ccccccCccccCCCCCCC
Q 039997 204 Q----IP-QL--TELHSLSKFDVSYNNLSC----PIPDK--EQFSTFDESSYRGNLNLC 249 (333)
Q Consensus 204 ~----~~-~~--~~l~~L~~L~l~~N~l~~----~~~~~--~~~~~l~~~~~~~n~~~c 249 (333)
. .+ .+ ..+++|+.|++++|.++. ..+.. ..++.+..+++.+|+...
T Consensus 259 ~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~ 317 (386)
T 2ca6_A 259 RGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317 (386)
T ss_dssp HHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred hhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence 5 22 44 448999999999999987 23322 235677888888887654
No 119
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.71 E-value=1.2e-17 Score=134.21 Aligned_cols=120 Identities=21% Similarity=0.201 Sum_probs=96.5
Q ss_pred ccccEEECCCCcccccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEc
Q 039997 141 EYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDV 219 (333)
Q Consensus 141 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l 219 (333)
.+|+.|+|++|+++++.|..|.++++|+.|+|++|+|+++.+..|..+++|++|+|++|+++++.+ .+..+++|+.|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 568889999999999999999999999999999999999988889999999999999999999888 7999999999999
Q ss_pred ccCcCcccCCCCccccc-cCccccCCCCCCCCCCCCCCCCCC
Q 039997 220 SYNNLSCPIPDKEQFST-FDESSYRGNLNLCCPPINKSCTNL 260 (333)
Q Consensus 220 ~~N~l~~~~~~~~~~~~-l~~~~~~~n~~~c~~~~~~~c~~~ 260 (333)
++|+++|.|+....+.. +.........+....+....|..+
T Consensus 110 ~~N~~~c~c~~l~~l~~~l~~~~~~~~~~~~~~~~~~~C~~~ 151 (170)
T 3g39_A 110 LNNPWDCACSDILYLSRWISQHPGLVFGYLNLDPDSARCSGT 151 (170)
T ss_dssp CSSCBCTTBGGGHHHHHHHHHCGGGEECSSSBCGGGSBBCC-
T ss_pred CCCCCCCCchhHHHHHHHHHhCcceeeccccCCcccceeCCC
Confidence 99999999975544432 222111111122234566677653
No 120
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.70 E-value=3.7e-18 Score=152.14 Aligned_cols=195 Identities=17% Similarity=0.194 Sum_probs=127.0
Q ss_pred CcccEEECCCCcCCCCCCccccCCcccceeeccccccccc-cchhhcCCCCCCEEeCCCCcCCCCCChhh---hcccccc
Q 039997 2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGP-IPHQLCQLRKLSIMDLSHNRLNGSIPSCI---TNLLFWK 77 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~-~~~~f~~L~~L~~LdLs~N~l~~~~p~~l---~~L~~L~ 77 (333)
++++.|++++|.+++..+. +.++++|++|++++|.+++. .+..+..+++|++|++++|.+++..+..+ .+|+.|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 5688999999999976655 55789999999999998865 77888999999999999999876666554 4556666
Q ss_pred ccCC-cccc--ccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeecccccc--chh--hhhc-cccEEECC
Q 039997 78 VGNG-DLYG--LVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYES--YKG--VILE-YMAGLDLS 149 (333)
Q Consensus 78 ~~~n-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~l~-~L~~L~Ls 149 (333)
+.+| .+.+ +... .........+.+..+. .+.. ++. ..++ +|++|+++
T Consensus 149 L~~~~~l~~~~l~~~---------~~~~~~L~~L~l~~~~----------------~l~~~~~~~~~~~l~~~L~~L~l~ 203 (336)
T 2ast_B 149 LSGCSGFSEFALQTL---------LSSCSRLDELNLSWCF----------------DFTEKHVQVAVAHVSETITQLNLS 203 (336)
T ss_dssp CTTCBSCCHHHHHHH---------HHHCTTCCEEECCCCT----------------TCCHHHHHHHHHHSCTTCCEEECC
T ss_pred CCCCCCCCHHHHHHH---------HhcCCCCCEEcCCCCC----------------CcChHHHHHHHHhcccCCCEEEeC
Confidence 6666 3332 1100 0001111111111110 1111 111 0145 78888888
Q ss_pred CC--ccc-ccCCccccCccccceeeccccc-CCCCchHHHhCCCCCCEEeccCCc-ccCCCC-CCCCCCCCCEEEcccC
Q 039997 150 SN--ELT-GDISSEIGDLRNIHGLNLSHNF-LSGSIPESFSNLKMIESLDLSHNK-LNGQIP-QLTELHSLSKFDVSYN 222 (333)
Q Consensus 150 ~n--~l~-~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~-~~~~l~~L~~L~l~~N 222 (333)
+| .++ +..+..+..+++|+.|++++|. +++..+..+..+++|+.|++++|. +..... .+..+++|+.|++++|
T Consensus 204 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp SCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 88 444 3445566777888888888888 665666677788888888888885 221111 4667788888888877
No 121
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.70 E-value=3.3e-18 Score=152.48 Aligned_cols=215 Identities=17% Similarity=0.194 Sum_probs=145.1
Q ss_pred cccEEECCCCcCCCCCCccccCC--cccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCC-CChhh---hccccc
Q 039997 3 ALEILDLRDNYFSGRIPYGINEH--SNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGS-IPSCI---TNLLFW 76 (333)
Q Consensus 3 ~L~~L~Ls~N~i~~~~~~~~~~l--~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~-~p~~l---~~L~~L 76 (333)
.++.+|+++|.+. +..+..+ ++++.|++++|.+++..+. +..+++|++|++++|.++.. +|..+ .+|+.|
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 4789999999887 4667777 8999999999999977766 45799999999999998754 55444 456677
Q ss_pred cccCCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccc--cchh--hhhccccEEECCCC-
Q 039997 77 KVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYE--SYKG--VILEYMAGLDLSSN- 151 (333)
Q Consensus 77 ~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~l~~L~~L~Ls~n- 151 (333)
++.+|.+.+.... ..........+.++.+. .+. .++. ..+++|++|++++|
T Consensus 124 ~L~~~~l~~~~~~--------~l~~~~~L~~L~L~~~~----------------~l~~~~l~~~~~~~~~L~~L~l~~~~ 179 (336)
T 2ast_B 124 SLEGLRLSDPIVN--------TLAKNSNLVRLNLSGCS----------------GFSEFALQTLLSSCSRLDELNLSWCF 179 (336)
T ss_dssp ECTTCBCCHHHHH--------HHTTCTTCSEEECTTCB----------------SCCHHHHHHHHHHCTTCCEEECCCCT
T ss_pred eCcCcccCHHHHH--------HHhcCCCCCEEECCCCC----------------CCCHHHHHHHHhcCCCCCEEcCCCCC
Confidence 7777765431100 00001111111121110 111 1111 11678999999999
Q ss_pred ccccc-CCccccCcc-ccceeecccc--cCC-CCchHHHhCCCCCCEEeccCCc-ccCCCC-CCCCCCCCCEEEcccCc-
Q 039997 152 ELTGD-ISSEIGDLR-NIHGLNLSHN--FLS-GSIPESFSNLKMIESLDLSHNK-LNGQIP-QLTELHSLSKFDVSYNN- 223 (333)
Q Consensus 152 ~l~~~-~~~~~~~l~-~L~~L~Ls~N--~l~-~~~~~~~~~l~~L~~L~L~~N~-l~~~~~-~~~~l~~L~~L~l~~N~- 223 (333)
.+++. .+..+..++ +|++|++++| .++ +..+..+..+++|+.|++++|. +++..+ .+..+++|+.|++++|.
T Consensus 180 ~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 259 (336)
T 2ast_B 180 DFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYD 259 (336)
T ss_dssp TCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTT
T ss_pred CcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCC
Confidence 88864 466788889 9999999999 455 3456778889999999999998 665545 78888999999999995
Q ss_pred Cccc-CCCCccccccCccccCCC
Q 039997 224 LSCP-IPDKEQFSTFDESSYRGN 245 (333)
Q Consensus 224 l~~~-~~~~~~~~~l~~~~~~~n 245 (333)
+... ......+..++.+++.++
T Consensus 260 ~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 260 IIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCHHHHHHHhcCCCCCEEeccCc
Confidence 2211 001224555666666665
No 122
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.69 E-value=2.5e-17 Score=129.24 Aligned_cols=128 Identities=21% Similarity=0.268 Sum_probs=106.9
Q ss_pred Ccccceeeccccccc-cccchhhcCCCCCCEEeCCCCcCCCCCChhhhccccccccCCccccccccCCCCcccccccccC
Q 039997 25 HSNLRALLLKGNYLQ-GPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYN 103 (333)
Q Consensus 25 l~~L~~L~L~~N~i~-~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~~L~~~~n~~~~~~~~~~~~~~~~~~~~~~ 103 (333)
.++|++|++++|.++ +..|..+..+++|+.|++++|.+++. ..+..
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~------------------------------- 62 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPK------------------------------- 62 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCC-------------------------------
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhc-------------------------------
Confidence 478999999999998 67777889999999999999998843 22222
Q ss_pred CCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCccccCccccceeecccccCCCC-ch
Q 039997 104 STVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGS-IP 182 (333)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~ 182 (333)
+++|+.|++++|.+++..|..+..+++|+.|++++|.+++. .+
T Consensus 63 ------------------------------------l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~ 106 (149)
T 2je0_A 63 ------------------------------------LNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTI 106 (149)
T ss_dssp ------------------------------------CTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHH
T ss_pred ------------------------------------CCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHH
Confidence 46788999999999987888888899999999999999964 34
Q ss_pred HHHhCCCCCCEEeccCCcccCCCC----CCCCCCCCCEEEccc
Q 039997 183 ESFSNLKMIESLDLSHNKLNGQIP----QLTELHSLSKFDVSY 221 (333)
Q Consensus 183 ~~~~~l~~L~~L~L~~N~l~~~~~----~~~~l~~L~~L~l~~ 221 (333)
..+..+++|+.|++++|.+++..+ .+..+++|+.|++++
T Consensus 107 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 107 EPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp GGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred HHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 778999999999999999998776 577889999998763
No 123
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.68 E-value=7.3e-17 Score=130.35 Aligned_cols=136 Identities=16% Similarity=0.134 Sum_probs=100.9
Q ss_pred cccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhccccccccCCccccccccCCCCccccccc
Q 039997 21 GINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYN 100 (333)
Q Consensus 21 ~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~~L~~~~n~~~~~~~~~~~~~~~~~~~ 100 (333)
.+...++|++|++++|+++.+ |......++|++||+++|.+++. ..+..
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~---------------------------- 62 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPL---------------------------- 62 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCC----------------------------
T ss_pred hcCCcCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc--ccccc----------------------------
Confidence 456678888888888888854 44333334888888888888742 12211
Q ss_pred ccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCccccCccccceeecccccCCCC
Q 039997 101 YYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGS 180 (333)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 180 (333)
+++|++|++++|.+++..+..|..+++|+.|++++|+++..
T Consensus 63 ---------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~ 103 (176)
T 1a9n_A 63 ---------------------------------------LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVEL 103 (176)
T ss_dssp ---------------------------------------CSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCG
T ss_pred ---------------------------------------CCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcc
Confidence 46688888888888877667678888899999999888743
Q ss_pred ch-HHHhCCCCCCEEeccCCcccCCCCC----CCCCCCCCEEEcccCcCcc
Q 039997 181 IP-ESFSNLKMIESLDLSHNKLNGQIPQ----LTELHSLSKFDVSYNNLSC 226 (333)
Q Consensus 181 ~~-~~~~~l~~L~~L~L~~N~l~~~~~~----~~~l~~L~~L~l~~N~l~~ 226 (333)
.+ ..+..+++|+.|++++|.++..++. +..+++|+.+|+++|....
T Consensus 104 ~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 104 GDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp GGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred hhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 32 2788888899999999988866553 7788889999988887653
No 124
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.67 E-value=1.5e-16 Score=128.20 Aligned_cols=120 Identities=21% Similarity=0.236 Sum_probs=96.5
Q ss_pred ccccEEECCCCcccccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEc
Q 039997 141 EYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDV 219 (333)
Q Consensus 141 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l 219 (333)
..|+.|+|++|++++..|..|.++++|+.|+|++|+|+++++..|..+++|+.|+|++|+++++++ .+..+++|+.|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 568899999999999999999999999999999999998888889999999999999999999888 6999999999999
Q ss_pred ccCcCcccCCCCccccccCcc---cc-CCCCCCCCCCCCCCCCCC
Q 039997 220 SYNNLSCPIPDKEQFSTFDES---SY-RGNLNLCCPPINKSCTNL 260 (333)
Q Consensus 220 ~~N~l~~~~~~~~~~~~l~~~---~~-~~n~~~c~~~~~~~c~~~ 260 (333)
++|++.|.|+....+..+... .+ ......+..++...|..+
T Consensus 113 ~~N~~~c~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~ 157 (174)
T 2r9u_A 113 YNNPWDCECRDIMYLRNWVADHTSIVMRWDGKAVNDPDSAKCAGT 157 (174)
T ss_dssp CSSCBCTTBGGGHHHHHHHHHCGGGEEEESSSEEECGGGSBBTTT
T ss_pred CCCCcccccccHHHHHHHHHhcccccccccccccCCcccCEECCC
Confidence 999999998755433322111 01 011112345667778754
No 125
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.66 E-value=1.3e-17 Score=163.09 Aligned_cols=150 Identities=18% Similarity=0.154 Sum_probs=74.6
Q ss_pred CCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhcc---ccccccCCccccccccCCCCc
Q 039997 18 IPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNL---LFWKVGNGDLYGLVERGRDFD 94 (333)
Q Consensus 18 ~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L---~~L~~~~n~~~~~~~~~~~~~ 94 (333)
.+..|.+++.|+.|+|++|.+.. +|..+..+++|++|+|++|.|+ .+|..+.+| +.|++++|.+..++....
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~--- 290 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIFN-ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELG--- 290 (727)
T ss_dssp ------CCCCCCEEECTTSCCSC-CCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGG---
T ss_pred ChhhhccCCCCcEEECCCCCCCC-CChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhhc---
Confidence 35566666777777777777763 3333446777777777777776 556554433 333344444332211000
Q ss_pred ccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCccccCccccceeeccc
Q 039997 95 LEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSH 174 (333)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 174 (333)
.+.+|++|+|++|.|+ .+|..|..+++|+.|+|++
T Consensus 291 --------------------------------------------~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~ 325 (727)
T 4b8c_D 291 --------------------------------------------SCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEG 325 (727)
T ss_dssp --------------------------------------------GGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTT
T ss_pred --------------------------------------------CCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCC
Confidence 0455666666666666 3444566666666666666
Q ss_pred ccCCCCchHHHhCCC-CCCEEeccCCcccCCCCCCCCCCCCCEEEcccC
Q 039997 175 NFLSGSIPESFSNLK-MIESLDLSHNKLNGQIPQLTELHSLSKFDVSYN 222 (333)
Q Consensus 175 N~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~l~~L~~L~l~~N 222 (333)
|.|++.+|..+..+. .+..+++++|.+++..| ..|+.|+++.|
T Consensus 326 N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p-----~~l~~l~l~~n 369 (727)
T 4b8c_D 326 NPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP-----HERRFIEINTD 369 (727)
T ss_dssp SCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC-----CC---------
T ss_pred CccCCCChHHHhhcchhhhHHhhccCcccCcCc-----cccceeEeecc
Confidence 666666665554432 12235666666665444 23455556655
No 126
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.66 E-value=1e-18 Score=144.08 Aligned_cols=62 Identities=26% Similarity=0.287 Sum_probs=34.5
Q ss_pred ccccEEECCCCcccccCCccccCccccceeecccccCCCCch-HHHhCCCCCCEEeccCCcccCC
Q 039997 141 EYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIP-ESFSNLKMIESLDLSHNKLNGQ 204 (333)
Q Consensus 141 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~ 204 (333)
++|+.|++++|++++. | .+..+++|+.|++++|++++..+ ..+..+++|+.|++++|.+++.
T Consensus 93 ~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 93 DTLEELWISYNQIASL-S-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp HHCSEEEEEEEECCCH-H-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred CcCCEEECcCCcCCcC-C-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence 4455566666666543 2 35555666666666666654322 3455566666666666665544
No 127
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.66 E-value=1.2e-16 Score=128.97 Aligned_cols=131 Identities=18% Similarity=0.165 Sum_probs=97.9
Q ss_pred CcccEEECCCCcCCCCCCccccCCc-ccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhccccccccC
Q 039997 2 SALEILDLRDNYFSGRIPYGINEHS-NLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGN 80 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~~~~~~~~~l~-~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~~L~~~~ 80 (333)
++|++|++++|.++. +|. +..+. +|++|++++|+|+++ ..|..+++|++|++++|++++..+..+..
T Consensus 19 ~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~-------- 86 (176)
T 1a9n_A 19 VRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQA-------- 86 (176)
T ss_dssp TSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHH--------
T ss_pred CCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhc--------
Confidence 568889999998884 454 44444 889999999988866 56888889999999999888443333333
Q ss_pred CccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCC-c
Q 039997 81 GDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDIS-S 159 (333)
Q Consensus 81 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~ 159 (333)
+++|+.|++++|+++...+ .
T Consensus 87 -----------------------------------------------------------l~~L~~L~L~~N~i~~~~~~~ 107 (176)
T 1a9n_A 87 -----------------------------------------------------------LPDLTELILTNNSLVELGDLD 107 (176)
T ss_dssp -----------------------------------------------------------CTTCCEEECCSCCCCCGGGGG
T ss_pred -----------------------------------------------------------CCCCCEEECCCCcCCcchhhH
Confidence 3667888899988875443 3
Q ss_pred cccCccccceeecccccCCCCchH---HHhCCCCCCEEeccCCcccC
Q 039997 160 EIGDLRNIHGLNLSHNFLSGSIPE---SFSNLKMIESLDLSHNKLNG 203 (333)
Q Consensus 160 ~~~~l~~L~~L~Ls~N~l~~~~~~---~~~~l~~L~~L~L~~N~l~~ 203 (333)
.+..+++|+.|++++|.++...+. .+..+++|+.||+++|.+..
T Consensus 108 ~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 108 PLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp GGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred hhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 778888899999999988854333 48888889999988887653
No 128
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.64 E-value=2.8e-16 Score=153.84 Aligned_cols=178 Identities=22% Similarity=0.201 Sum_probs=88.1
Q ss_pred CcccEEECCCCcCCCCCCccccCCcccce-----eeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhc---c
Q 039997 2 SALEILDLRDNYFSGRIPYGINEHSNLRA-----LLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITN---L 73 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~-----L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~---L 73 (333)
++++.|+|++|.+.. .+..+.....|+. ++++.|.+. +.++.|..+.+|+.|+|++|.+. .+|..+.. |
T Consensus 173 ~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L 249 (727)
T 4b8c_D 173 PLTPKIELFANGKDE-ANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFL 249 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSC
T ss_pred CccceEEeeCCCCCc-chhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCC
Confidence 346788999999884 3443332222222 333344444 56888999999999999999998 66665543 4
Q ss_pred ccccccCCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcc
Q 039997 74 LFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNEL 153 (333)
Q Consensus 74 ~~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l 153 (333)
+.|++++|.+..++.... .+.+|+.|+|++|+|
T Consensus 250 ~~L~Ls~N~l~~lp~~~~-----------------------------------------------~l~~L~~L~Ls~N~l 282 (727)
T 4b8c_D 250 TRLYLNGNSLTELPAEIK-----------------------------------------------NLSNLRVLDLSHNRL 282 (727)
T ss_dssp SCCBCTTSCCSCCCGGGG-----------------------------------------------GGTTCCEEECTTSCC
T ss_pred CEEEeeCCcCcccChhhh-----------------------------------------------CCCCCCEEeCcCCcC
Confidence 455555555543221110 056677777777777
Q ss_pred cccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCC-CCCEEEcccCcCcccCCCC
Q 039997 154 TGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELH-SLSKFDVSYNNLSCPIPDK 231 (333)
Q Consensus 154 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~-~L~~L~l~~N~l~~~~~~~ 231 (333)
+ .+|..|.++++|+.|+|++|.|+ .+|..|+.+++|+.|+|++|.+++..+ .+.... .+..+++++|.+++..|..
T Consensus 283 ~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~ 360 (727)
T 4b8c_D 283 T-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE 360 (727)
T ss_dssp S-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_pred C-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc
Confidence 7 55677777777777777777777 345557777777777777777776655 332221 1223567777777766653
No 129
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.63 E-value=4.6e-16 Score=138.38 Aligned_cols=223 Identities=11% Similarity=0.083 Sum_probs=144.5
Q ss_pred CcccEEECCCCcCC--------------------CCCCccccC--------CcccceeeccccccccccchhhcCCCCCC
Q 039997 2 SALEILDLRDNYFS--------------------GRIPYGINE--------HSNLRALLLKGNYLQGPIPHQLCQLRKLS 53 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~--------------------~~~~~~~~~--------l~~L~~L~L~~N~i~~~~~~~f~~L~~L~ 53 (333)
++|++|||++|.|. .+.+..|.+ +++|+.++|.+ .++.+.+.+|.++++|+
T Consensus 49 ~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~ 127 (329)
T 3sb4_A 49 PSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLK 127 (329)
T ss_dssp TTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCC
T ss_pred ccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccc
Confidence 67999999999998 344567888 99999999999 88889999999999999
Q ss_pred EEeCCCCcCCCCCChhhhccccccccCCcccc----ccccCCCCccccc--c----cccCCCCCcCC-CC-CCCCccccc
Q 039997 54 IMDLSHNRLNGSIPSCITNLLFWKVGNGDLYG----LVERGRDFDLEDI--Y----NYYNSTVPLSL-DR-SDTRTLDTQ 121 (333)
Q Consensus 54 ~LdLs~N~l~~~~p~~l~~L~~L~~~~n~~~~----~~~~~~~~~~~~~--~----~~~~~~~~~~~-~~-~~~~~~~~~ 121 (333)
.+++++|.+....+.+|.+...+......... ........+.... . ....+..+..+ .. .........
T Consensus 128 ~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l 207 (329)
T 3sb4_A 128 ICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFL 207 (329)
T ss_dssp EEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEE
T ss_pred eEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceE
Confidence 99999999875666666554322221111100 0000000000000 0 00000000000 00 000000000
Q ss_pred eEEEEeeccccccchhhhhccccEEECCCCcccccCCccccCccccceeecccccCCCCchHHHhCCCCCC-EEeccCCc
Q 039997 122 VVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIE-SLDLSHNK 200 (333)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~-~L~L~~N~ 200 (333)
.....+.......+. ..+++|+.+++++|+++.+.+.+|.++++|+.+++++| ++.+.+.+|.++++|+ .+++.+ .
T Consensus 208 ~~~~~l~~~~~~~l~-~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~ 284 (329)
T 3sb4_A 208 TIEGKLDNADFKLIR-DYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-S 284 (329)
T ss_dssp EEEECCCHHHHHHHH-HHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-T
T ss_pred EEeeeecHHHHHHHH-HhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-c
Confidence 001101000000000 01578999999999999999999999999999999998 8878889999999999 999998 7
Q ss_pred ccCCCC-CCCCCCCCCEEEcccCcCcccC
Q 039997 201 LNGQIP-QLTELHSLSKFDVSYNNLSCPI 228 (333)
Q Consensus 201 l~~~~~-~~~~l~~L~~L~l~~N~l~~~~ 228 (333)
++.+.+ .|.++++|+.+++++|.++...
T Consensus 285 l~~I~~~aF~~c~~L~~l~l~~n~i~~I~ 313 (329)
T 3sb4_A 285 VTAIEFGAFMGCDNLRYVLATGDKITTLG 313 (329)
T ss_dssp CCEECTTTTTTCTTEEEEEECSSCCCEEC
T ss_pred ceEEchhhhhCCccCCEEEeCCCccCccc
Confidence 887877 9999999999999999887554
No 130
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.61 E-value=3.2e-15 Score=119.97 Aligned_cols=61 Identities=23% Similarity=0.307 Sum_probs=39.2
Q ss_pred ccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCC
Q 039997 4 LEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIP 67 (333)
Q Consensus 4 L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p 67 (333)
.+++|+++|.++ .+|..+. ++|++|+|++|+|+++.|+.|.++++|++|+|++|++++..+
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~ 71 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPA 71 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCT
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccCh
Confidence 356777777776 3555443 566777777777776666666666677766666666664333
No 131
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.61 E-value=1.6e-17 Score=154.36 Aligned_cols=221 Identities=17% Similarity=0.142 Sum_probs=108.2
Q ss_pred CcccEEECCCCcCCCC----CCccccCCcccceeeccccccccccchhh-cCCC----CCCEEeCCCCcCCC----CCCh
Q 039997 2 SALEILDLRDNYFSGR----IPYGINEHSNLRALLLKGNYLQGPIPHQL-CQLR----KLSIMDLSHNRLNG----SIPS 68 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~~----~~~~~~~l~~L~~L~L~~N~i~~~~~~~f-~~L~----~L~~LdLs~N~l~~----~~p~ 68 (333)
++|++|+|++|.+++. ++..+..+++|++|++++|.+++..+..+ ..+. +|++|++++|+++. .++.
T Consensus 28 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~ 107 (461)
T 1z7x_W 28 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS 107 (461)
T ss_dssp TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHH
Confidence 4567777777776632 34556666777777777777764433332 3344 57777777777662 2233
Q ss_pred hh---hccccccccCCccccccccCCCCcccccccccCCCCCcCCCCCCCCcc-----------ccceEEEEeecccccc
Q 039997 69 CI---TNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTL-----------DTQVVVNFMTKNRYES 134 (333)
Q Consensus 69 ~l---~~L~~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~ 134 (333)
.+ .+|+.|++++|.+....... ..............+.++.+.+... ........+..+.+..
T Consensus 108 ~l~~~~~L~~L~Ls~n~i~~~~~~~---l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~ 184 (461)
T 1z7x_W 108 TLRTLPTLQELHLSDNLLGDAGLQL---LCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE 184 (461)
T ss_dssp HTTSCTTCCEEECCSSBCHHHHHHH---HHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred HHccCCceeEEECCCCcCchHHHHH---HHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcch
Confidence 33 34455555555543210000 0000000000111111111111100 0011112222222211
Q ss_pred chhhh--------hccccEEECCCCccccc----CCccccCccccceeecccccCCCCc-----hHHHhCCCCCCEEecc
Q 039997 135 YKGVI--------LEYMAGLDLSSNELTGD----ISSEIGDLRNIHGLNLSHNFLSGSI-----PESFSNLKMIESLDLS 197 (333)
Q Consensus 135 ~~~~~--------l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~-----~~~~~~l~~L~~L~L~ 197 (333)
..... .++|+.|++++|.+++. .+..+..+++|++|++++|.++... +..+..+++|+.|+++
T Consensus 185 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~ 264 (461)
T 1z7x_W 185 AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIW 264 (461)
T ss_dssp HHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECc
Confidence 11000 23677777777777643 3455556677777777777766432 2222246677777777
Q ss_pred CCcccCC-----CCCCCCCCCCCEEEcccCcCc
Q 039997 198 HNKLNGQ-----IPQLTELHSLSKFDVSYNNLS 225 (333)
Q Consensus 198 ~N~l~~~-----~~~~~~l~~L~~L~l~~N~l~ 225 (333)
+|.++.. ...+..+++|+.|++++|.+.
T Consensus 265 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 297 (461)
T 1z7x_W 265 ECGITAKGCGDLCRVLRAKESLKELSLAGNELG 297 (461)
T ss_dssp TSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCH
T ss_pred CCCCCHHHHHHHHHHHhhCCCcceEECCCCCCc
Confidence 7777652 224555677777777777765
No 132
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.60 E-value=3.5e-15 Score=141.88 Aligned_cols=121 Identities=28% Similarity=0.326 Sum_probs=92.9
Q ss_pred ccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhccccccccCCccccccccCCCCcccccccccCCCC
Q 039997 27 NLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTV 106 (333)
Q Consensus 27 ~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (333)
.|++|+|++|+|+++ |. |..+++|+.|+|++|.++ .+|..+.++
T Consensus 442 ~L~~L~Ls~n~l~~l-p~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l--------------------------------- 485 (567)
T 1dce_A 442 DVRVLHLAHKDLTVL-CH-LEQLLLVTHLDLSHNRLR-ALPPALAAL--------------------------------- 485 (567)
T ss_dssp TCSEEECTTSCCSSC-CC-GGGGTTCCEEECCSSCCC-CCCGGGGGC---------------------------------
T ss_pred CceEEEecCCCCCCC-cC-ccccccCcEeecCccccc-ccchhhhcC---------------------------------
Confidence 578888888888864 44 788888888888888888 667666543
Q ss_pred CcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCccccCccccceeecccccCCCCc-hHHH
Q 039997 107 PLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSI-PESF 185 (333)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~ 185 (333)
++|+.|+|++|++++ +| .+.++++|+.|+|++|+|++.. |..+
T Consensus 486 ----------------------------------~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l 529 (567)
T 1dce_A 486 ----------------------------------RCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPL 529 (567)
T ss_dssp ----------------------------------TTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGG
T ss_pred ----------------------------------CCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHH
Confidence 567778888888886 34 7888888888888888888776 7888
Q ss_pred hCCCCCCEEeccCCcccCCCCCC----CCCCCCCEEEc
Q 039997 186 SNLKMIESLDLSHNKLNGQIPQL----TELHSLSKFDV 219 (333)
Q Consensus 186 ~~l~~L~~L~L~~N~l~~~~~~~----~~l~~L~~L~l 219 (333)
+.+++|+.|++++|.+++.++.. ..+++|+.|++
T Consensus 530 ~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 530 VSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp GGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred hcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 88888888888888888776632 33677887764
No 133
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.60 E-value=6.7e-17 Score=150.20 Aligned_cols=204 Identities=18% Similarity=0.104 Sum_probs=109.0
Q ss_pred CcccEEECCCCcCCCCCCcccc-----CCcccceeeccccccccc----cchhhcCCCCCCEEeCCCCcCCCCCC----h
Q 039997 2 SALEILDLRDNYFSGRIPYGIN-----EHSNLRALLLKGNYLQGP----IPHQLCQLRKLSIMDLSHNRLNGSIP----S 68 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~~~~~~~~-----~l~~L~~L~L~~N~i~~~----~~~~f~~L~~L~~LdLs~N~l~~~~p----~ 68 (333)
++|++|++++|.+++..+..+. ..++|++|++++|.++.. .+..+..+++|++|++++|+++.... .
T Consensus 170 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~ 249 (461)
T 1z7x_W 170 PDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCP 249 (461)
T ss_dssp TTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHH
T ss_pred CCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHH
Confidence 5788888888888754433333 245888888888888754 46667778888888888888763211 1
Q ss_pred ----hhhccccccccCCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccc-----cchhhh
Q 039997 69 ----CITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYE-----SYKGVI 139 (333)
Q Consensus 69 ----~l~~L~~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 139 (333)
...+++.|++.+|.+....... .............+. +..+.+. .+....
T Consensus 250 ~~~~~~~~L~~L~L~~n~l~~~~~~~----l~~~l~~~~~L~~L~-----------------Ls~n~i~~~~~~~l~~~l 308 (461)
T 1z7x_W 250 GLLHPSSRLRTLWIWECGITAKGCGD----LCRVLRAKESLKELS-----------------LAGNELGDEGARLLCETL 308 (461)
T ss_dssp HHTSTTCCCCEEECTTSCCCHHHHHH----HHHHHHHCTTCCEEE-----------------CTTCCCHHHHHHHHHHHH
T ss_pred HHhcCCCCceEEECcCCCCCHHHHHH----HHHHHhhCCCcceEE-----------------CCCCCCchHHHHHHHHHh
Confidence 2346667777777655410000 000000000000011 1111110 000000
Q ss_pred ---hccccEEECCCCccccc----CCccccCccccceeecccccCCCCchHHHhC-----CCCCCEEeccCCcccC----
Q 039997 140 ---LEYMAGLDLSSNELTGD----ISSEIGDLRNIHGLNLSHNFLSGSIPESFSN-----LKMIESLDLSHNKLNG---- 203 (333)
Q Consensus 140 ---l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-----l~~L~~L~L~~N~l~~---- 203 (333)
.++|+.|++++|.+++. .+..+..+++|++|++++|.+++..+..+.. .++|+.|++++|.++.
T Consensus 309 ~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~ 388 (461)
T 1z7x_W 309 LEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCS 388 (461)
T ss_dssp TSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHH
T ss_pred ccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHH
Confidence 13566666666666643 2344445566666666666666443333332 4566666666666653
Q ss_pred CCC-CCCCCCCCCEEEcccCcCcc
Q 039997 204 QIP-QLTELHSLSKFDVSYNNLSC 226 (333)
Q Consensus 204 ~~~-~~~~l~~L~~L~l~~N~l~~ 226 (333)
..+ .+..+++|+.|++++|+++.
T Consensus 389 ~l~~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 389 SLAATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp HHHHHHHHCCCCCEEECCSSSCCH
T ss_pred HHHHHHHhCCCccEEECCCCCCCH
Confidence 222 45556666666666666653
No 134
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.59 E-value=7.3e-15 Score=118.28 Aligned_cols=57 Identities=19% Similarity=0.347 Sum_probs=36.9
Q ss_pred cEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCC
Q 039997 5 EILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNG 64 (333)
Q Consensus 5 ~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~ 64 (333)
+.+++++|.++ .+|..+. ++|++|+|++|+|+++.|+.|.++++|+.|+|++|++++
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 71 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA 71 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCc
Confidence 45667777765 4555443 566677777777766666666666666666666666663
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.54 E-value=8.7e-17 Score=132.46 Aligned_cols=137 Identities=22% Similarity=0.261 Sum_probs=116.0
Q ss_pred ccCCcccceeeccccccccccch------hhcCCCCCCEEeCCCCcCCCCCChhhhccccccccCCccccccccCCCCcc
Q 039997 22 INEHSNLRALLLKGNYLQGPIPH------QLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDL 95 (333)
Q Consensus 22 ~~~l~~L~~L~L~~N~i~~~~~~------~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~~L~~~~n~~~~~~~~~~~~~~ 95 (333)
+.....++.++++.+.+.+..|. .|..+++|++|++++|++++ +| .+..
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~----------------------- 68 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSG----------------------- 68 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHH-----------------------
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-cccc-----------------------
Confidence 45567888888888888877766 89999999999999999984 55 4443
Q ss_pred cccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCccccCccccceeecccc
Q 039997 96 EDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHN 175 (333)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 175 (333)
+++|+.|++++|.++ ..|..+..+++|+.|++++|
T Consensus 69 --------------------------------------------l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N 103 (198)
T 1ds9_A 69 --------------------------------------------MENLRILSLGRNLIK-KIENLDAVADTLEELWISYN 103 (198)
T ss_dssp --------------------------------------------HTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEE
T ss_pred --------------------------------------------CCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCC
Confidence 467889999999999 55677788899999999999
Q ss_pred cCCCCchHHHhCCCCCCEEeccCCcccCCCC--CCCCCCCCCEEEcccCcCcccCCC
Q 039997 176 FLSGSIPESFSNLKMIESLDLSHNKLNGQIP--QLTELHSLSKFDVSYNNLSCPIPD 230 (333)
Q Consensus 176 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~l~~L~~L~l~~N~l~~~~~~ 230 (333)
++++ .| .+..+++|+.|++++|.++...+ .+..+++|+.+++++|++++.+|.
T Consensus 104 ~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~ 158 (198)
T 1ds9_A 104 QIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE 158 (198)
T ss_dssp ECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred cCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence 9996 44 68899999999999999997654 688899999999999999988765
No 136
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.52 E-value=2e-14 Score=128.68 Aligned_cols=91 Identities=21% Similarity=0.250 Sum_probs=82.5
Q ss_pred hccccEEECCC-CcccccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEE
Q 039997 140 LEYMAGLDLSS-NELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKF 217 (333)
Q Consensus 140 l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L 217 (333)
+.+|+.|+|++ |.++++.+..|.++++|+.|+|++|+|++++|..|..+++|+.|+|++|+|+++++ .+..+. |+.|
T Consensus 30 ~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l 108 (347)
T 2ifg_A 30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQEL 108 (347)
T ss_dssp CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEE
T ss_pred CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEE
Confidence 35688999996 99999988999999999999999999999999999999999999999999999888 555555 9999
Q ss_pred EcccCcCcccCCCC
Q 039997 218 DVSYNNLSCPIPDK 231 (333)
Q Consensus 218 ~l~~N~l~~~~~~~ 231 (333)
++++|+|.|.|...
T Consensus 109 ~l~~N~~~c~c~l~ 122 (347)
T 2ifg_A 109 VLSGNPLHCSCALR 122 (347)
T ss_dssp ECCSSCCCCCGGGH
T ss_pred EeeCCCccCCCccH
Confidence 99999999998643
No 137
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.47 E-value=3.7e-14 Score=126.90 Aligned_cols=105 Identities=22% Similarity=0.179 Sum_probs=85.5
Q ss_pred EEECCCC-cCCCCCCccccCCcccceeeccc-cccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhccccccccCCcc
Q 039997 6 ILDLRDN-YFSGRIPYGINEHSNLRALLLKG-NYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGNGDL 83 (333)
Q Consensus 6 ~L~Ls~N-~i~~~~~~~~~~l~~L~~L~L~~-N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~~L~~~~n~~ 83 (333)
.++++++ +++ .+|. +..+++|++|+|++ |+|+++.++.|.+|++|+.|+|++|+|++..|..|.+|
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l---------- 79 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFT---------- 79 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSC----------
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCC----------
Confidence 4688887 888 4777 88888999999986 99988888889999999999999999887766666553
Q ss_pred ccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCccccC
Q 039997 84 YGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGD 163 (333)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 163 (333)
++|+.|+|++|+|+++++..|..
T Consensus 80 ---------------------------------------------------------~~L~~L~l~~N~l~~~~~~~~~~ 102 (347)
T 2ifg_A 80 ---------------------------------------------------------PRLSRLNLSFNALESLSWKTVQG 102 (347)
T ss_dssp ---------------------------------------------------------SCCCEEECCSSCCSCCCSTTTCS
T ss_pred ---------------------------------------------------------cCCCEEeCCCCccceeCHHHccc
Confidence 56778899999988777777777
Q ss_pred ccccceeecccccCCCC
Q 039997 164 LRNIHGLNLSHNFLSGS 180 (333)
Q Consensus 164 l~~L~~L~Ls~N~l~~~ 180 (333)
++ |+.|+|++|.++..
T Consensus 103 ~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 103 LS-LQELVLSGNPLHCS 118 (347)
T ss_dssp CC-CCEEECCSSCCCCC
T ss_pred CC-ceEEEeeCCCccCC
Confidence 66 88888888888744
No 138
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.44 E-value=2.5e-13 Score=120.68 Aligned_cols=201 Identities=13% Similarity=0.082 Sum_probs=131.8
Q ss_pred CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcC----CCCCChhhhcccccc
Q 039997 2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRL----NGSIPSCITNLLFWK 77 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l----~~~~p~~l~~L~~L~ 77 (333)
++|+.++|++ .++.+.+.+|.++++|+.+++++|.+..+.+.+|.+..++..+.++.+.. ......+|.++..|.
T Consensus 101 ~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~ 179 (329)
T 3sb4_A 101 QTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLE 179 (329)
T ss_dssp TTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCE
T ss_pred CCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccc
Confidence 6799999999 88878888999999999999999999889999999999898888877432 111122232222222
Q ss_pred ----ccCCc---------------cccccccCCCC--cccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccch
Q 039997 78 ----VGNGD---------------LYGLVERGRDF--DLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYK 136 (333)
Q Consensus 78 ----~~~n~---------------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (333)
+.... +..+....... ..............+.+....... .....|.
T Consensus 180 ~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~------------I~~~aF~ 247 (329)
T 3sb4_A 180 TTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATT------------IPDFTFA 247 (329)
T ss_dssp EEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCE------------ECTTTTT
T ss_pred eeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcce------------ecHhhhh
Confidence 00000 00000000000 000000000011111111110100 0111122
Q ss_pred hhhhccccEEECCCCcccccCCccccCccccc-eeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCC
Q 039997 137 GVILEYMAGLDLSSNELTGDISSEIGDLRNIH-GLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSL 214 (333)
Q Consensus 137 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L 214 (333)
+ +.+|+.+++++| ++.+.+.+|.++++|+ .+++++ .++.+.+.+|.++++|+.++++.|.++.+.+ .|.++++|
T Consensus 248 ~--~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L 323 (329)
T 3sb4_A 248 Q--KKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPS 323 (329)
T ss_dssp T--CTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCC
T ss_pred C--CCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcch
Confidence 2 678999999998 8888999999999999 999999 7887888999999999999999999999988 99999999
Q ss_pred CEEEc
Q 039997 215 SKFDV 219 (333)
Q Consensus 215 ~~L~l 219 (333)
+.+..
T Consensus 324 ~~ly~ 328 (329)
T 3sb4_A 324 KLIYK 328 (329)
T ss_dssp CEEEC
T ss_pred hhhcc
Confidence 99863
No 139
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.42 E-value=2.4e-15 Score=135.70 Aligned_cols=163 Identities=19% Similarity=0.154 Sum_probs=108.8
Q ss_pred CcccEEECCCCcCCCCCCccccCC-----cccceeeccccccccccchh-hcCCCCCCEEeCCCCcCCCCCChhhhcccc
Q 039997 2 SALEILDLRDNYFSGRIPYGINEH-----SNLRALLLKGNYLQGPIPHQ-LCQLRKLSIMDLSHNRLNGSIPSCITNLLF 75 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~~~~~~~~~l-----~~L~~L~L~~N~i~~~~~~~-f~~L~~L~~LdLs~N~l~~~~p~~l~~L~~ 75 (333)
++|+.|+|++|.|+......+... ++|++|+|++|.++...... ...+++|+.|||++|.++......+...-
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L- 150 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL- 150 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH-
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH-
Confidence 467888888888874433333332 57888888888876443333 23456788888888877632222221100
Q ss_pred ccccCCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccc
Q 039997 76 WKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTG 155 (333)
Q Consensus 76 L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 155 (333)
. .....|+.|+|++|.++.
T Consensus 151 -~------------------------------------------------------------~~~~~L~~L~Ls~n~l~~ 169 (372)
T 3un9_A 151 -L------------------------------------------------------------HDQCQITTLRLSNNPLTA 169 (372)
T ss_dssp -H------------------------------------------------------------STTCCCCEEECCSSCCHH
T ss_pred -H------------------------------------------------------------hcCCccceeeCCCCCCCh
Confidence 0 003568899999999875
Q ss_pred c----CCccccCccccceeecccccCCCCc----hHHHhCCCCCCEEeccCCcccCCCC-----CCCCCCCCCEEEcccC
Q 039997 156 D----ISSEIGDLRNIHGLNLSHNFLSGSI----PESFSNLKMIESLDLSHNKLNGQIP-----QLTELHSLSKFDVSYN 222 (333)
Q Consensus 156 ~----~~~~~~~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~L~~N~l~~~~~-----~~~~l~~L~~L~l~~N 222 (333)
. .+..+...++|++|+|++|.|+... ...+...++|+.|+|++|.++.... .+...+.|+.|++++|
T Consensus 170 ~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N 249 (372)
T 3un9_A 170 AGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFN 249 (372)
T ss_dssp HHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTS
T ss_pred HHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCC
Confidence 3 3344467788999999999987432 4566778899999999999875322 3445678999999999
Q ss_pred cCcc
Q 039997 223 NLSC 226 (333)
Q Consensus 223 ~l~~ 226 (333)
+++.
T Consensus 250 ~i~~ 253 (372)
T 3un9_A 250 ELSS 253 (372)
T ss_dssp SCCH
T ss_pred CCCH
Confidence 8864
No 140
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.26 E-value=5.5e-13 Score=120.28 Aligned_cols=161 Identities=17% Similarity=0.122 Sum_probs=108.9
Q ss_pred CcccEEECCCCcCCCCCCcc-ccCCcccceeeccccccccccchhh-----cCCCCCCEEeCCCCcCCCCCChhhhcccc
Q 039997 2 SALEILDLRDNYFSGRIPYG-INEHSNLRALLLKGNYLQGPIPHQL-----CQLRKLSIMDLSHNRLNGSIPSCITNLLF 75 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~~~~~~-~~~l~~L~~L~L~~N~i~~~~~~~f-----~~L~~L~~LdLs~N~l~~~~p~~l~~L~~ 75 (333)
++|++|||++|.|+...... ...+++|++|+|++|.|+......+ ...++|++|+|++|.++......+...
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~-- 178 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEG-- 178 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHH--
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHH--
Confidence 58999999999997543333 3456899999999999986555554 357899999999999873211111100
Q ss_pred ccccCCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccc
Q 039997 76 WKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTG 155 (333)
Q Consensus 76 L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 155 (333)
| . ..++|++|+|++|.+++
T Consensus 179 L-----------------------------------------------------------~--~~~~L~~L~Ls~N~l~~ 197 (372)
T 3un9_A 179 L-----------------------------------------------------------A--GNTSVTHLSLLHTGLGD 197 (372)
T ss_dssp H-----------------------------------------------------------H--TCSSCCEEECTTSSCHH
T ss_pred H-----------------------------------------------------------h--cCCCcCEEeCCCCCCCc
Confidence 0 0 04668999999999985
Q ss_pred cC----CccccCccccceeecccccCCCC----chHHHhCCCCCCEEeccCCcccCCCC-CCCCC---C--CCCEEE--c
Q 039997 156 DI----SSEIGDLRNIHGLNLSHNFLSGS----IPESFSNLKMIESLDLSHNKLNGQIP-QLTEL---H--SLSKFD--V 219 (333)
Q Consensus 156 ~~----~~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l---~--~L~~L~--l 219 (333)
.. +..+...++|+.|+|++|.|+.. ....+...++|+.|||++|.|+.... .+..+ . .++.+. +
T Consensus 198 ~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll 277 (372)
T 3un9_A 198 EGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLT 277 (372)
T ss_dssp HHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC
T ss_pred HHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhh
Confidence 33 45667778999999999999853 23445567899999999999875433 22222 1 155555 5
Q ss_pred ccCcCc
Q 039997 220 SYNNLS 225 (333)
Q Consensus 220 ~~N~l~ 225 (333)
.+|.+.
T Consensus 278 ~~~~~~ 283 (372)
T 3un9_A 278 EGTAVS 283 (372)
T ss_dssp ----CH
T ss_pred cCCccC
Confidence 555554
No 141
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.21 E-value=1.4e-10 Score=105.62 Aligned_cols=66 Identities=14% Similarity=0.131 Sum_probs=46.8
Q ss_pred CcccEEECCCCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhh
Q 039997 2 SALEILDLRDNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCI 70 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l 70 (333)
.+|+.+++..+ ++.+...+|.+ .+|+.+.+.. .++.+.+.+|.++.+|+.+++++|+++.....+|
T Consensus 135 ~~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF 200 (401)
T 4fdw_A 135 SQIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTF 200 (401)
T ss_dssp CCCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTT
T ss_pred CCccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhE
Confidence 35777787766 66566777777 4688888875 6666777888888888888888887774433444
No 142
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.19 E-value=1.7e-12 Score=124.24 Aligned_cols=85 Identities=14% Similarity=0.109 Sum_probs=48.9
Q ss_pred hccccEEECCCCcccccCC-ccccCccccceeecccccCC-CCchHHHhCCCCCCEEeccC-----------CcccCCCC
Q 039997 140 LEYMAGLDLSSNELTGDIS-SEIGDLRNIHGLNLSHNFLS-GSIPESFSNLKMIESLDLSH-----------NKLNGQIP 206 (333)
Q Consensus 140 l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~-----------N~l~~~~~ 206 (333)
+++|++|++++|.+++... ..+..+++|+.|+++ +.+. ...+..+..+++|+.|++++ |.++....
T Consensus 292 ~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~ 370 (592)
T 3ogk_B 292 AAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGL 370 (592)
T ss_dssp GGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHH
T ss_pred cCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHH
Confidence 5678888888888654333 335667777777777 3333 22333445567777777772 44442211
Q ss_pred --CCCCCCCCCEEEcccCcCc
Q 039997 207 --QLTELHSLSKFDVSYNNLS 225 (333)
Q Consensus 207 --~~~~l~~L~~L~l~~N~l~ 225 (333)
....+++|+.|+++.|.++
T Consensus 371 ~~l~~~~~~L~~L~l~~~~l~ 391 (592)
T 3ogk_B 371 IALAQGCQELEYMAVYVSDIT 391 (592)
T ss_dssp HHHHHHCTTCSEEEEEESCCC
T ss_pred HHHHhhCccCeEEEeecCCcc
Confidence 1233566666666655554
No 143
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.12 E-value=1.6e-11 Score=117.41 Aligned_cols=60 Identities=15% Similarity=0.171 Sum_probs=36.2
Q ss_pred CcccEEECCCCcC---CCCCCcccc------------CCcccceeeccccccccccchhhcCC--CCCCEEeCCCCc
Q 039997 2 SALEILDLRDNYF---SGRIPYGIN------------EHSNLRALLLKGNYLQGPIPHQLCQL--RKLSIMDLSHNR 61 (333)
Q Consensus 2 ~~L~~L~Ls~N~i---~~~~~~~~~------------~l~~L~~L~L~~N~i~~~~~~~f~~L--~~L~~LdLs~N~ 61 (333)
++|+.|+|+++.- .+.+|..++ .+++|++|+|++|.+++..+..+... .+|++|++++|.
T Consensus 73 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~ 149 (592)
T 3ogk_B 73 PNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCS 149 (592)
T ss_dssp TTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCE
T ss_pred CCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCC
Confidence 4677777766432 122332222 56778888888877765555555543 347777777765
No 144
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.12 E-value=8.9e-10 Score=100.22 Aligned_cols=79 Identities=9% Similarity=0.057 Sum_probs=42.5
Q ss_pred cccEEECCCCcccccCCccccCccccceeecccccCC-----CCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCC
Q 039997 142 YMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLS-----GSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLS 215 (333)
Q Consensus 142 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-----~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~ 215 (333)
+|+.+++ .+.++.+...+|.++++|+.+++.+|.+. .+.+.+|.++++|+.+++.+ .++.+.. .|.++.+|+
T Consensus 249 ~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~ 326 (401)
T 4fdw_A 249 GITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVT 326 (401)
T ss_dssp CCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCC
T ss_pred CccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCcc
Confidence 4555555 23344455556666666666666555543 24445566666666666653 3444444 555556666
Q ss_pred EEEcccC
Q 039997 216 KFDVSYN 222 (333)
Q Consensus 216 ~L~l~~N 222 (333)
.+.+..|
T Consensus 327 ~l~lp~~ 333 (401)
T 4fdw_A 327 QLTIPAN 333 (401)
T ss_dssp EEEECTT
T ss_pred EEEECcc
Confidence 6665433
No 145
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.09 E-value=9.6e-12 Score=119.01 Aligned_cols=56 Identities=13% Similarity=0.096 Sum_probs=29.3
Q ss_pred CccccceeecccccCCCCc-hHHHhCCCCCCEEeccCCcccCC-CC-CCCCCCCCCEEEc
Q 039997 163 DLRNIHGLNLSHNFLSGSI-PESFSNLKMIESLDLSHNKLNGQ-IP-QLTELHSLSKFDV 219 (333)
Q Consensus 163 ~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~~l~~L~~L~l 219 (333)
.+++|++|++++|.+++.. ...+..+++|+.|++++| +... .+ ....+++|+.|++
T Consensus 287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L 345 (594)
T 2p1m_B 287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRV 345 (594)
T ss_dssp HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEE
T ss_pred hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEE
Confidence 4566666666666655321 222445666666666666 3211 11 1223566777766
No 146
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.94 E-value=7.4e-11 Score=112.84 Aligned_cols=179 Identities=14% Similarity=0.038 Sum_probs=112.5
Q ss_pred CcccEEECCCCcCCCC-CCccccCCcccceeecc---------ccccccccchhhc-CCCCCCEEeCCCCcCCCCCChh-
Q 039997 2 SALEILDLRDNYFSGR-IPYGINEHSNLRALLLK---------GNYLQGPIPHQLC-QLRKLSIMDLSHNRLNGSIPSC- 69 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L~L~---------~N~i~~~~~~~f~-~L~~L~~LdLs~N~l~~~~p~~- 69 (333)
++|++|++++| +++. .+.....+++|++|+++ .+.+++.....+. ++++|+.|+++.|.++...+..
T Consensus 314 ~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l 392 (594)
T 2p1m_B 314 PKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITI 392 (594)
T ss_dssp TTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHH
T ss_pred CCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHH
Confidence 67999999988 4422 22233458899999883 3556543333333 5899999999989887543332
Q ss_pred ---hhccccccccCC------ccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccch--hh
Q 039997 70 ---ITNLLFWKVGNG------DLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYK--GV 138 (333)
Q Consensus 70 ---l~~L~~L~~~~n------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 138 (333)
+.+|+.|++..+ .+...+. ...+. ..
T Consensus 393 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~-------------------------------------------~~~~~~l~~ 429 (594)
T 2p1m_B 393 ARNRPNMTRFRLCIIEPKAPDYLTLEPL-------------------------------------------DIGFGAIVE 429 (594)
T ss_dssp HHHCTTCCEEEEEESSTTCCCTTTCCCT-------------------------------------------HHHHHHHHH
T ss_pred HhhCCCcceeEeecccCCCcccccCCch-------------------------------------------hhHHHHHHh
Confidence 345555555421 1110000 00000 00
Q ss_pred hhccccEEECCCCcccccCCccccC-ccccceeecccccCCCCchHHH-hCCCCCCEEeccCCcccCCCC--CCCCCCCC
Q 039997 139 ILEYMAGLDLSSNELTGDISSEIGD-LRNIHGLNLSHNFLSGSIPESF-SNLKMIESLDLSHNKLNGQIP--QLTELHSL 214 (333)
Q Consensus 139 ~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~--~~~~l~~L 214 (333)
.+++|+.|++++ .+++.....+.. +++|+.|+|++|.+++.....+ ..+++|+.|++++|.++.... ....+++|
T Consensus 430 ~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L 508 (594)
T 2p1m_B 430 HCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETM 508 (594)
T ss_dssp HCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGS
T ss_pred hCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCC
Confidence 146788899977 566544444444 7889999999998875544444 668889999999998854332 34457889
Q ss_pred CEEEcccCcCc
Q 039997 215 SKFDVSYNNLS 225 (333)
Q Consensus 215 ~~L~l~~N~l~ 225 (333)
+.|++++|+++
T Consensus 509 ~~L~l~~~~~~ 519 (594)
T 2p1m_B 509 RSLWMSSCSVS 519 (594)
T ss_dssp SEEEEESSCCB
T ss_pred CEEeeeCCCCC
Confidence 99999988874
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.74 E-value=4.1e-09 Score=94.36 Aligned_cols=63 Identities=22% Similarity=0.325 Sum_probs=42.1
Q ss_pred CccccceeecccccCCCCchHHHh---CCCCCCEEeccCCcccCCCC-----CCCCCCCCCEEEcccCcCc
Q 039997 163 DLRNIHGLNLSHNFLSGSIPESFS---NLKMIESLDLSHNKLNGQIP-----QLTELHSLSKFDVSYNNLS 225 (333)
Q Consensus 163 ~l~~L~~L~Ls~N~l~~~~~~~~~---~l~~L~~L~L~~N~l~~~~~-----~~~~l~~L~~L~l~~N~l~ 225 (333)
.+|+|+.|+|++|.+....+..+. .+++|++|+|+.|.+..... .+..+++|+.|++++|.++
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 467888888888877643333333 46778888888887765321 3345678888888888765
No 148
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.64 E-value=8.2e-09 Score=83.50 Aligned_cols=61 Identities=11% Similarity=0.224 Sum_probs=32.4
Q ss_pred ccccEEECCCCccccc----CCccccCccccceeec--ccccCCCC----chHHHhCCCCCCEEeccCCcc
Q 039997 141 EYMAGLDLSSNELTGD----ISSEIGDLRNIHGLNL--SHNFLSGS----IPESFSNLKMIESLDLSHNKL 201 (333)
Q Consensus 141 ~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L--s~N~l~~~----~~~~~~~l~~L~~L~L~~N~l 201 (333)
++|++|+|++|.|+.. ....+...++|++|+| ++|.|+.. +...+...++|+.|++++|.+
T Consensus 93 ~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 93 NTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp SSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred CCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 4466666666666542 2334444456666666 55666532 123344445566666666554
No 149
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.61 E-value=1.8e-08 Score=85.80 Aligned_cols=61 Identities=33% Similarity=0.302 Sum_probs=31.1
Q ss_pred ccccEEECCCCcccccC--CccccCccccceeecccccCCCCchHHHhCCC--CCCEEeccCCcccC
Q 039997 141 EYMAGLDLSSNELTGDI--SSEIGDLRNIHGLNLSHNFLSGSIPESFSNLK--MIESLDLSHNKLNG 203 (333)
Q Consensus 141 ~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~--~L~~L~L~~N~l~~ 203 (333)
+.|+.|+|++|+|+++. +..+..+++|+.|+|++|+|++. ..+..+. +|+.|+|++|.+.+
T Consensus 170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCD 234 (267)
T ss_dssp TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGG
T ss_pred CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCcc
Confidence 44555555555555422 34444555566666666655543 1222232 55666666665554
No 150
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.56 E-value=8.6e-07 Score=80.33 Aligned_cols=80 Identities=9% Similarity=0.071 Sum_probs=63.2
Q ss_pred hccccEEECCCCcccccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEE
Q 039997 140 LEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFD 218 (333)
Q Consensus 140 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~ 218 (333)
..+|+.+.+..+ ++.+...+|.++.+|+.+++..+ ++.+...+|.++++|+.+++..| ++.+.. +|.+..+|+.++
T Consensus 296 ~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ 372 (394)
T 4fs7_A 296 CSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVE 372 (394)
T ss_dssp CTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEE
T ss_pred cccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEE
Confidence 567888888654 66677788888899999998754 66667788888889999988876 666666 888888899988
Q ss_pred cccC
Q 039997 219 VSYN 222 (333)
Q Consensus 219 l~~N 222 (333)
+..+
T Consensus 373 lp~~ 376 (394)
T 4fs7_A 373 LPKR 376 (394)
T ss_dssp EEGG
T ss_pred ECCC
Confidence 8654
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.56 E-value=5.9e-08 Score=86.78 Aligned_cols=179 Identities=17% Similarity=0.123 Sum_probs=104.8
Q ss_pred CcccEEECCCCcCC---------CCCCccccCCcccceeeccccc-cccccchhhcCCCCCCEEeCCCCcCCCCCCh---
Q 039997 2 SALEILDLRDNYFS---------GRIPYGINEHSNLRALLLKGNY-LQGPIPHQLCQLRKLSIMDLSHNRLNGSIPS--- 68 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~---------~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~--- 68 (333)
++|+.|.+..+... +.++..+..+++|+.|+|++|. ++ +.+ + .+++|+.|++..+.+......
T Consensus 139 ~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~-l~~--~-~~~~L~~L~L~~~~l~~~~l~~l~ 214 (362)
T 2ra8_A 139 AHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS-IGK--K-PRPNLKSLEIISGGLPDSVVEDIL 214 (362)
T ss_dssp TTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB-CCS--C-BCTTCSEEEEECSBCCHHHHHHHH
T ss_pred chhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce-ecc--c-cCCCCcEEEEecCCCChHHHHHHH
Confidence 57899988765432 1233445678999999999884 33 322 3 389999999998887632211
Q ss_pred --hhhccccccccCCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEE
Q 039997 69 --CITNLLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGL 146 (333)
Q Consensus 69 --~l~~L~~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 146 (333)
.+++|+.|++..+..... ..... ... . ..+.+..+++|+.|
T Consensus 215 ~~~lp~L~~L~L~~~~~~~~-~~~~~---~~l-------~--------------------------~~l~~~~~p~Lr~L 257 (362)
T 2ra8_A 215 GSDLPNLEKLVLYVGVEDYG-FDGDM---NVF-------R--------------------------PLFSKDRFPNLKWL 257 (362)
T ss_dssp HSBCTTCCEEEEECBCGGGT-CCSCG---GGT-------G--------------------------GGSCTTTCTTCCEE
T ss_pred HccCCCCcEEEEeccccccc-cchhH---HHH-------H--------------------------HHHhcCCCCCcCEE
Confidence 234455555421110000 00000 000 0 00011115789999
Q ss_pred ECCCCcccccCCccc---cCccccceeecccccCCCCch----HHHhCCCCCCEEeccCCcccCCCC-CCCC-CCCCCEE
Q 039997 147 DLSSNELTGDISSEI---GDLRNIHGLNLSHNFLSGSIP----ESFSNLKMIESLDLSHNKLNGQIP-QLTE-LHSLSKF 217 (333)
Q Consensus 147 ~Ls~n~l~~~~~~~~---~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~~~-~~~~-l~~L~~L 217 (333)
+|++|.+....+..+ ..+++|+.|+|+.|.++.... ..+..+++|+.|++++|.++...- .+.. + ...+
T Consensus 258 ~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~ 335 (362)
T 2ra8_A 258 GIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKI 335 (362)
T ss_dssp EEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEE
T ss_pred eCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEE
Confidence 999999875332222 247899999999999885422 233557899999999998764322 2222 1 3457
Q ss_pred EcccCc
Q 039997 218 DVSYNN 223 (333)
Q Consensus 218 ~l~~N~ 223 (333)
+++.++
T Consensus 336 ~~~~~~ 341 (362)
T 2ra8_A 336 DVSDSQ 341 (362)
T ss_dssp ECCSBC
T ss_pred EecCCc
Confidence 777665
No 152
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.53 E-value=8.4e-09 Score=83.44 Aligned_cols=114 Identities=11% Similarity=0.160 Sum_probs=72.5
Q ss_pred CcccEEECCCC-cCCCC----CCccccCCcccceeeccccccccc----cchhhcCCCCCCEEeCCCCcCCCCCChhhhc
Q 039997 2 SALEILDLRDN-YFSGR----IPYGINEHSNLRALLLKGNYLQGP----IPHQLCQLRKLSIMDLSHNRLNGSIPSCITN 72 (333)
Q Consensus 2 ~~L~~L~Ls~N-~i~~~----~~~~~~~l~~L~~L~L~~N~i~~~----~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~ 72 (333)
++|++|+|++| .|... +...+...++|++|+|++|.|+.. ....+...++|++|+|++|.|...--..+..
T Consensus 36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~ 115 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE 115 (185)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHH
Confidence 56777888887 77632 223344557788888888877632 2344555677888888888776311111110
Q ss_pred cccccccCCccccccccCCCCcccccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEEC--CC
Q 039997 73 LLFWKVGNGDLYGLVERGRDFDLEDIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDL--SS 150 (333)
Q Consensus 73 L~~L~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L--s~ 150 (333)
. |. ...+|++|+| ++
T Consensus 116 ~--L~-------------------------------------------------------------~n~~L~~L~L~~~~ 132 (185)
T 1io0_A 116 A--LQ-------------------------------------------------------------SNTSLIELRIDNQS 132 (185)
T ss_dssp G--GG-------------------------------------------------------------GCSSCCEEECCCCS
T ss_pred H--HH-------------------------------------------------------------hCCCceEEEecCCC
Confidence 0 00 0356899999 88
Q ss_pred CcccccC----CccccCccccceeecccccCC
Q 039997 151 NELTGDI----SSEIGDLRNIHGLNLSHNFLS 178 (333)
Q Consensus 151 n~l~~~~----~~~~~~l~~L~~L~Ls~N~l~ 178 (333)
|.++... ...+...++|++|+|++|.+.
T Consensus 133 N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 133 QPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp SCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred CCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 9998543 344455688999999999876
No 153
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.46 E-value=1.5e-07 Score=80.19 Aligned_cols=78 Identities=22% Similarity=0.179 Sum_probs=56.6
Q ss_pred CcccEEECCCCcCCC--CCCccccCCcccceeecccccccccc-chhhcCCCCCCEEeCCCCcCCCCCCh-------hhh
Q 039997 2 SALEILDLRDNYFSG--RIPYGINEHSNLRALLLKGNYLQGPI-PHQLCQLRKLSIMDLSHNRLNGSIPS-------CIT 71 (333)
Q Consensus 2 ~~L~~L~Ls~N~i~~--~~~~~~~~l~~L~~L~L~~N~i~~~~-~~~f~~L~~L~~LdLs~N~l~~~~p~-------~l~ 71 (333)
++|+.|+||+|.|++ .+|..+..+++|+.|+|++|+|+++. -+.+.++ +|++|+|++|.+++..|+ .+.
T Consensus 170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~il~ 248 (267)
T 3rw6_A 170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAIRE 248 (267)
T ss_dssp TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHHHH
T ss_pred CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHHHHH
Confidence 578999999999986 34566778999999999999998652 2234444 999999999999865552 244
Q ss_pred ccccccccC
Q 039997 72 NLLFWKVGN 80 (333)
Q Consensus 72 ~L~~L~~~~ 80 (333)
.++.|...+
T Consensus 249 ~~P~L~~LD 257 (267)
T 3rw6_A 249 RFPKLLRLD 257 (267)
T ss_dssp HCTTCCEES
T ss_pred HCcccCeEC
Confidence 555555443
No 154
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=98.33 E-value=2.3e-07 Score=70.20 Aligned_cols=89 Identities=19% Similarity=0.159 Sum_probs=57.1
Q ss_pred eeecccccCC--CCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEcccCcCcccCCCCccccccCccccCCC
Q 039997 169 GLNLSHNFLS--GSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVSYNNLSCPIPDKEQFSTFDESSYRGN 245 (333)
Q Consensus 169 ~L~Ls~N~l~--~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~l~~~~~~~n 245 (333)
.++.+++.++ .++ ..+ .++|+.|+|++|+|+.+.+ .|..+++|+.|+|++|+|.|+|...+...++......
T Consensus 12 ~v~Cs~~~L~~~~vP-~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l~~l~~wl~~~~~~-- 86 (130)
T 3rfe_A 12 LVDCGRRGLTWASLP-TAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWLAGRPER-- 86 (130)
T ss_dssp EEECCSSCCCTTTSC-SCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGGHHHHHHHHTSSCS--
T ss_pred EEEeCCCCCccccCC-CCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCccHHHHHHHHhCccc--
Confidence 5666666665 332 211 2468888888888888777 7888889999999999999999644433333321110
Q ss_pred CCCCCCCCCCCCCCCCCcCCC
Q 039997 246 LNLCCPPINKSCTNLPELLET 266 (333)
Q Consensus 246 ~~~c~~~~~~~c~~~~~~~~~ 266 (333)
. ......|..|+.+.+.
T Consensus 87 -~---~~~~~~C~~P~~l~g~ 103 (130)
T 3rfe_A 87 -A---PYRDLRCVAPPALRGR 103 (130)
T ss_dssp -G---GGTTCBCCBSTTTTTC
T ss_pred -c---cccCcEeCcChHHcCC
Confidence 0 0234567777666554
No 155
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.09 E-value=7.7e-06 Score=73.99 Aligned_cols=75 Identities=9% Similarity=0.111 Sum_probs=58.6
Q ss_pred hccccEEECCCCcccccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCCCCCCCCCCCEE
Q 039997 140 LEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPQLTELHSLSKF 217 (333)
Q Consensus 140 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L 217 (333)
+.+|+.+++..+ ++.+...+|.++.+|+.+++..+ ++.+...+|.++++|+.+++..+ +....-.|.+..+|+.+
T Consensus 319 c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 319 CTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp CTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GGGGGGGBCTTCEEEEE
T ss_pred CCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CEEhhheecCCCCCcEE
Confidence 567999999754 77788899999999999999887 77677889999999999999765 33222266666666554
No 156
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.07 E-value=1.5e-05 Score=72.15 Aligned_cols=57 Identities=11% Similarity=0.264 Sum_probs=28.2
Q ss_pred ccccEEECCCCcccccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCC
Q 039997 141 EYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHN 199 (333)
Q Consensus 141 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 199 (333)
.+|+.+++..+ ++.+...+|.++.+|+.+.+..+ ++.+...+|.++++|+.+++.++
T Consensus 311 ~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 311 ISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp TTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred CCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCc
Confidence 34445555432 44444455555555555555432 44344455555555555555544
No 157
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.05 E-value=1.5e-05 Score=71.60 Aligned_cols=133 Identities=12% Similarity=0.151 Sum_probs=81.6
Q ss_pred CCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCCCCCChhhhccccccccCCccccccccCCCCccc
Q 039997 17 RIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLE 96 (333)
Q Consensus 17 ~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~~~~p~~l~~L~~L~~~~n~~~~~~~~~~~~~~~ 96 (333)
.....+....+|+.+.+..+ ++.+...+|.+..+|+.+.+..+ ++.....+|.++
T Consensus 208 i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~----------------------- 262 (379)
T 4h09_A 208 VTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNC----------------------- 262 (379)
T ss_dssp ECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTC-----------------------
T ss_pred Eeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCcccccee-----------------------
Confidence 45566777888888888765 45577888999999999988765 442223333332
Q ss_pred ccccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCcccccCCccccCccccceeeccccc
Q 039997 97 DIYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNF 176 (333)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 176 (333)
..|+.+.+..+ +..+...+|.++.+|+.+.+.++.
T Consensus 263 --------------------------------------------~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~ 297 (379)
T 4h09_A 263 --------------------------------------------TALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSA 297 (379)
T ss_dssp --------------------------------------------TTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTT
T ss_pred --------------------------------------------ehhcccccccc-ceeccccccccccccccccccccc
Confidence 33444555432 444555566666666666666666
Q ss_pred CCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEcc
Q 039997 177 LSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDVS 220 (333)
Q Consensus 177 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l~ 220 (333)
++.+...+|.++.+|+.+++..+ ++.+.. +|.+..+|+.+.+.
T Consensus 298 i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 298 IETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred cceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence 66555566666666666666543 444444 56666666666554
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.01 E-value=3.3e-05 Score=69.84 Aligned_cols=82 Identities=9% Similarity=0.212 Sum_probs=65.9
Q ss_pred hccccEEECCCCcccccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEE
Q 039997 140 LEYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFD 218 (333)
Q Consensus 140 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~ 218 (333)
...|+.+.+. +.++.+...+|.++.+|+.+++..+ ++.+...+|.++.+|+.+.+..+ ++.+.. +|.+..+|+.++
T Consensus 287 c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~ 363 (394)
T 4gt6_A 287 CPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIE 363 (394)
T ss_dssp CTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEE
T ss_pred ccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEE
Confidence 4668888886 4566677889999999999999865 66567788999999999999765 666666 888999999999
Q ss_pred cccCcC
Q 039997 219 VSYNNL 224 (333)
Q Consensus 219 l~~N~l 224 (333)
+.++..
T Consensus 364 ~~~~~~ 369 (394)
T 4gt6_A 364 YSGSRS 369 (394)
T ss_dssp ESSCHH
T ss_pred ECCcee
Confidence 987753
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.00 E-value=1.5e-06 Score=68.82 Aligned_cols=97 Identities=15% Similarity=0.177 Sum_probs=62.7
Q ss_pred CccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCc-CCCCCChhhhccccccccCCccccccccCCCCcccc
Q 039997 19 PYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNR-LNGSIPSCITNLLFWKVGNGDLYGLVERGRDFDLED 97 (333)
Q Consensus 19 ~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~-l~~~~p~~l~~L~~L~~~~n~~~~~~~~~~~~~~~~ 97 (333)
|....+-..|++||++++.|+...-..+.++++|++|+|+++. |+. .++..+..+.
T Consensus 54 P~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD---~gL~~L~~~~-------------------- 110 (176)
T 3e4g_A 54 PTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIED---GCLERLSQLE-------------------- 110 (176)
T ss_dssp CCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCH---HHHHHHHTCH--------------------
T ss_pred CcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCH---HHHHHHHhcc--------------------
Confidence 4433333578888888888876666667888888888888885 542 2333221100
Q ss_pred cccccCCCCCcCCCCCCCCccccceEEEEeeccccccchhhhhccccEEECCCCc-ccccCCccccCccccceeeccccc
Q 039997 98 IYNYYNSTVPLSLDRSDTRTLDTQVVVNFMTKNRYESYKGVILEYMAGLDLSSNE-LTGDISSEIGDLRNIHGLNLSHNF 176 (333)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~ 176 (333)
...++|++|+|++|. ++..--..+.++++|++|+|+++.
T Consensus 111 ----------------------------------------~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 111 ----------------------------------------NLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp ----------------------------------------HHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCT
T ss_pred ----------------------------------------cccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCC
Confidence 002468888888874 775444556677888888888875
Q ss_pred -CC
Q 039997 177 -LS 178 (333)
Q Consensus 177 -l~ 178 (333)
++
T Consensus 151 ~It 153 (176)
T 3e4g_A 151 GVK 153 (176)
T ss_dssp TCC
T ss_pred CCC
Confidence 44
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.00 E-value=1.1e-06 Score=69.66 Aligned_cols=83 Identities=12% Similarity=0.120 Sum_probs=65.5
Q ss_pred ccccEEECCCCcccccCCccccCccccceeeccccc-CCCCchHHHhCC----CCCCEEeccCCc-ccCCCC-CCCCCCC
Q 039997 141 EYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNF-LSGSIPESFSNL----KMIESLDLSHNK-LNGQIP-QLTELHS 213 (333)
Q Consensus 141 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l----~~L~~L~L~~N~-l~~~~~-~~~~l~~ 213 (333)
..|+.||++++.++...-..+.++++|++|+|+++. ++..--..++.+ ++|++|+++++. ++...- .+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 458999999999987666777899999999999995 764433456654 379999999985 665333 5677899
Q ss_pred CCEEEcccCc
Q 039997 214 LSKFDVSYNN 223 (333)
Q Consensus 214 L~~L~l~~N~ 223 (333)
|+.|++++.+
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 9999999875
No 161
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.94 E-value=3.7e-05 Score=69.01 Aligned_cols=80 Identities=11% Similarity=0.090 Sum_probs=58.9
Q ss_pred ccccEEECCCCcccccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCCcccCCCC-CCCCCCCCCEEEc
Q 039997 141 EYMAGLDLSSNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-QLTELHSLSKFDV 219 (333)
Q Consensus 141 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~l 219 (333)
..|+.+.+..+ ++.+...+|.++.+|+.+.+..+ ++.+...+|.++++|+.+.+.++.++.+.+ .|.+..+|+.+.+
T Consensus 240 ~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~l 317 (379)
T 4h09_A 240 KALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTL 317 (379)
T ss_dssp SSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEEC
T ss_pred ccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEc
Confidence 44666667654 55566778888888888888654 554666778888888888888887777777 7888888888888
Q ss_pred ccC
Q 039997 220 SYN 222 (333)
Q Consensus 220 ~~N 222 (333)
..+
T Consensus 318 p~~ 320 (379)
T 4h09_A 318 PTA 320 (379)
T ss_dssp CTT
T ss_pred Ccc
Confidence 644
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.80 E-value=3.7e-05 Score=57.93 Aligned_cols=57 Identities=23% Similarity=0.298 Sum_probs=49.1
Q ss_pred cEEECCCCcCC-CCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCcCC
Q 039997 5 EILDLRDNYFS-GRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNRLN 63 (333)
Q Consensus 5 ~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~l~ 63 (333)
.++|.+++.++ ..+|..+. ++|++|+|++|+|+.+.++.|..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 36889999997 34665554 57999999999999999999999999999999999875
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.41 E-value=5.4e-05 Score=61.06 Aligned_cols=38 Identities=8% Similarity=0.317 Sum_probs=16.8
Q ss_pred cccceeecccc-cccc----ccchhhcCCCCCCEEeCCCCcCC
Q 039997 26 SNLRALLLKGN-YLQG----PIPHQLCQLRKLSIMDLSHNRLN 63 (333)
Q Consensus 26 ~~L~~L~L~~N-~i~~----~~~~~f~~L~~L~~LdLs~N~l~ 63 (333)
+.|++|+|++| +|.. .+.+++..-+.|+.|+|++|.|.
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~ig 83 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAIS 83 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCB
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCC
Confidence 34555555543 4432 12233444445555555555543
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.33 E-value=3.8e-05 Score=61.97 Aligned_cols=63 Identities=11% Similarity=0.192 Sum_probs=49.0
Q ss_pred CCcccEEECCCC-cCCCC----CCccccCCcccceeeccccccccc----cchhhcCCCCCCEEeCCCCcCC
Q 039997 1 DSALEILDLRDN-YFSGR----IPYGINEHSNLRALLLKGNYLQGP----IPHQLCQLRKLSIMDLSHNRLN 63 (333)
Q Consensus 1 ~~~L~~L~Ls~N-~i~~~----~~~~~~~l~~L~~L~L~~N~i~~~----~~~~f~~L~~L~~LdLs~N~l~ 63 (333)
++.|++|+|++| .|... +...+..-+.|+.|+|++|+|... +.+.+..-+.|+.|+|++|.|.
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 467999999986 88632 233455568999999999999843 3455667899999999999987
No 165
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=89.24 E-value=0.24 Score=28.80 Aligned_cols=17 Identities=12% Similarity=0.134 Sum_probs=7.0
Q ss_pred hhhhhHHHHHHHHHHHH
Q 039997 283 YWSFVASCVTVMLGLLA 299 (333)
Q Consensus 283 ~~~~~~~~~~~~~~~~~ 299 (333)
..+++.++++++++++.
T Consensus 14 A~gVVgGv~~~~ii~~~ 30 (44)
T 2ks1_B 14 ATGMVGALLLLLVVALG 30 (44)
T ss_dssp THHHHHHHHHHHHHHHH
T ss_pred EeehhHHHHHHHHHHHH
Confidence 34444444444333333
No 166
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=87.83 E-value=0.53 Score=27.34 Aligned_cols=18 Identities=6% Similarity=0.050 Sum_probs=7.7
Q ss_pred hhhhhhHHHHHHHHHHHH
Q 039997 282 LYWSFVASCVTVMLGLLA 299 (333)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~ 299 (333)
+..+++.++++++++++.
T Consensus 12 IA~gVVgGv~~v~ii~~~ 29 (44)
T 2l2t_A 12 IAAGVIGGLFILVIVGLT 29 (44)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred EEEeehHHHHHHHHHHHH
Confidence 344444444444333333
No 167
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=80.04 E-value=1.9 Score=24.98 Aligned_cols=6 Identities=0% Similarity=0.036 Sum_probs=2.2
Q ss_pred hhhccc
Q 039997 300 ILWVNP 305 (333)
Q Consensus 300 ~~~~~~ 305 (333)
++|.+|
T Consensus 32 ~~~~RR 37 (44)
T 2jwa_A 32 GILIKR 37 (44)
T ss_dssp HHHHHH
T ss_pred Hhheeh
Confidence 333333
No 168
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=79.31 E-value=2.4 Score=29.54 Aligned_cols=50 Identities=10% Similarity=0.017 Sum_probs=42.4
Q ss_pred CCcCCCCCCccccCCcccceeeccccccccccchhhcCCCCCCEEeCCCCc
Q 039997 11 DNYFSGRIPYGINEHSNLRALLLKGNYLQGPIPHQLCQLRKLSIMDLSHNR 61 (333)
Q Consensus 11 ~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~f~~L~~L~~LdLs~N~ 61 (333)
+..++.+...+|.++.+|+.+.+-.+ ++.+...+|.+..+|+.+.+....
T Consensus 5 g~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~~ 54 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGED 54 (100)
T ss_dssp CCCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCSC
T ss_pred CCccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCCC
Confidence 45677788889999999999999976 555889999999999999987654
No 169
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=73.69 E-value=3.3 Score=23.40 Aligned_cols=10 Identities=10% Similarity=-0.047 Sum_probs=4.1
Q ss_pred hhhhhHHHHH
Q 039997 283 YWSFVASCVT 292 (333)
Q Consensus 283 ~~~~~~~~~~ 292 (333)
..++++++++
T Consensus 16 ~~~vv~Gv~l 25 (41)
T 2k9y_A 16 IGGVAVGVVL 25 (41)
T ss_dssp HHHHHHHHHH
T ss_pred EeehhHHHHH
Confidence 3334444443
No 170
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=68.73 E-value=4.5 Score=22.58 Aligned_cols=10 Identities=0% Similarity=-0.147 Sum_probs=4.4
Q ss_pred hhhhHHHHHH
Q 039997 284 WSFVASCVTV 293 (333)
Q Consensus 284 ~~~~~~~~~~ 293 (333)
.+++++.+++
T Consensus 14 AGiVvG~v~g 23 (38)
T 2k1k_A 14 VAVIFGLLLG 23 (38)
T ss_dssp HHHHHHHHHH
T ss_pred eeeehHHHHH
Confidence 4444444443
No 171
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=67.54 E-value=4.4 Score=21.75 Aligned_cols=23 Identities=13% Similarity=0.059 Sum_probs=12.6
Q ss_pred hhhhHHHHHHHHHHHHhhhcccc
Q 039997 284 WSFVASCVTVMLGLLAILWVNPY 306 (333)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~ 306 (333)
..++++.+++..++...+.+||.
T Consensus 10 lt~i~gl~vif~~lg~tflywrg 32 (40)
T 2l9u_A 10 LTVIAGLVVIFMMLGGTFLYWRG 32 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCceeEEEcc
Confidence 34455666655556555655443
No 172
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=66.79 E-value=13 Score=25.78 Aligned_cols=49 Identities=18% Similarity=0.153 Sum_probs=32.8
Q ss_pred CCcccccCCccccCccccceeecccccCCCCchHHHhCCCCCCEEeccCC
Q 039997 150 SNELTGDISSEIGDLRNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHN 199 (333)
Q Consensus 150 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 199 (333)
+..++.+...+|.++.+|+.+.+..+ ++.+...+|.++.+|+.+.+...
T Consensus 5 g~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CCccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 34455566677777777777777664 45466667777777777776553
No 173
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=48.66 E-value=9.9 Score=19.14 Aligned_cols=20 Identities=25% Similarity=0.584 Sum_probs=11.1
Q ss_pred hhhhHHHHHHHHHHHHhhhc
Q 039997 284 WSFVASCVTVMLGLLAILWV 303 (333)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~ 303 (333)
|-++.+.+..+.++...+|.
T Consensus 6 weviaglvalltflafgfwl 25 (32)
T 2lx0_A 6 WEVIAGLVALLTFLAFGFWL 25 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555655555555555554
No 174
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=41.76 E-value=28 Score=18.61 Aligned_cols=21 Identities=5% Similarity=0.074 Sum_probs=9.3
Q ss_pred hhhhhHHHHHHHHHHHHhhhc
Q 039997 283 YWSFVASCVTVMLGLLAILWV 303 (333)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~ 303 (333)
+.+++++-+++.++++..+|+
T Consensus 9 IaGIVvgdi~~t~~i~~~vy~ 29 (33)
T 2l34_A 9 LAGIVVGDLVLTVLIALAVYF 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeEeHHHHHHHHHHHHHHhh
Confidence 344444444444444444443
No 175
>3arc_X Photosystem II PSBX protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3prq_X* 3prr_X* 3kzi_X* 3a0b_X* 3a0h_X*
Probab=24.17 E-value=89 Score=17.36 Aligned_cols=21 Identities=10% Similarity=0.297 Sum_probs=9.7
Q ss_pred hhhhhhhhHHHHHHHHHHHHh
Q 039997 280 VALYWSFVASCVTVMLGLLAI 300 (333)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~ 300 (333)
..++++++.|.++++++.+.+
T Consensus 7 ~nFl~Sl~aG~vvvv~i~~al 27 (39)
T 3arc_X 7 KGFFIGLLSGAVVLGLTFAVL 27 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 345555555554444333333
No 176
>2llm_A Amyloid beta A4 protein; alzheimer'S disease, protein fibril; NMR {Homo sapiens} PDB: 2loh_A
Probab=26.50 E-value=20 Score=20.36 Aligned_cols=17 Identities=6% Similarity=0.235 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHhhhcc
Q 039997 288 ASCVTVMLGLLAILWVN 304 (333)
Q Consensus 288 ~~~~~~~~~~~~~~~~~ 304 (333)
+++++..++++.++..+
T Consensus 25 ~gVai~~vIVvsl~mlR 41 (43)
T 2llm_A 25 GGVVIATVIVITLVMLK 41 (43)
Confidence 34444444444444443
Done!