BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>039998
DLSDVTHGWNEISATRWVYMALGFVISVILMVCVAKVAKASLDKSLIENGEKCIMGQSML
PAGPESPLDL

High Scoring Gene Products

Symbol, full name Information P value
AT1G03260 protein from Arabidopsis thaliana 2.3e-14
AT5G19070 protein from Arabidopsis thaliana 3.4e-11

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  039998
        (70 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2014530 - symbol:AT1G03260 species:3702 "Arabi...   184  2.3e-14   1
TAIR|locus:2179654 - symbol:AT5G19070 species:3702 "Arabi...   157  3.4e-11   1


>TAIR|locus:2014530 [details] [associations]
            symbol:AT1G03260 species:3702 "Arabidopsis thaliana"
            [GO:0005886 "plasma membrane" evidence=ISM] [GO:0005829 "cytosol"
            evidence=IDA] EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005829
            InterPro:IPR015414 Pfam:PF09335 eggNOG:COG0398 OMA:VIRIMKK
            HOGENOM:HOG000004965 ProtClustDB:CLSN2680094 EMBL:BT011222
            EMBL:BT011664 IPI:IPI00519746 RefSeq:NP_171825.3 UniGene:At.42553
            PaxDb:Q6NMJ6 PRIDE:Q6NMJ6 EnsemblPlants:AT1G03260.1 GeneID:839546
            KEGG:ath:AT1G03260 TAIR:At1g03260 InParanoid:Q6NMJ6
            PhylomeDB:Q6NMJ6 Genevestigator:Q6NMJ6 Uniprot:Q6NMJ6
        Length = 274

 Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
 Identities = 38/75 (50%), Positives = 54/75 (72%)

Query:     1 DLSDVTHGWNEISATRWVYMALGFVISVILMVCVAKVAKASLDKSLIENGEKCIMGQ--- 57
             DLSD+THGW+E+S  RWV M +G  ++VIL++C+ +VAK+SLDK+L ENG + + G+   
Sbjct:   189 DLSDITHGWHEVSVFRWVIMMVGVALAVILIICITRVAKSSLDKALAENGTE-LDGKKND 247

Query:    58 --SMLPAGPESPLDL 70
               S+LP   E P DL
Sbjct:   248 DASVLPIA-EPPPDL 261


>TAIR|locus:2179654 [details] [associations]
            symbol:AT5G19070 species:3702 "Arabidopsis thaliana"
            [GO:0005886 "plasma membrane" evidence=ISM] [GO:0015824 "proline
            transport" evidence=RCA] EMBL:CP002688 GenomeReviews:BA000015_GR
            InterPro:IPR015414 Pfam:PF09335 eggNOG:COG0398 OMA:ILMVCVT
            EMBL:BT014970 EMBL:BT020544 EMBL:AK228918 IPI:IPI00521087
            RefSeq:NP_197408.2 UniGene:At.22433 PaxDb:Q6DBQ2 PRIDE:Q6DBQ2
            EnsemblPlants:AT5G19070.1 GeneID:832026 KEGG:ath:AT5G19070
            TAIR:At5g19070 HOGENOM:HOG000004965 InParanoid:Q6DBQ2
            PhylomeDB:Q6DBQ2 ProtClustDB:CLSN2680094 Genevestigator:Q6DBQ2
            Uniprot:Q6DBQ2
        Length = 280

 Score = 157 (60.3 bits), Expect = 3.4e-11, P = 3.4e-11
 Identities = 31/50 (62%), Positives = 37/50 (74%)

Query:     1 DLSDVTHGWNEISATRWVYMALGFVISVILMVCVAKVAKASLDKSLIENG 50
             DLSDVTH W+E S  RW ++    VISVILMVCV KVAK +L K+L E+G
Sbjct:   187 DLSDVTHKWSEFSPGRWAFLISSLVISVILMVCVTKVAKDALRKALAEHG 236


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.134   0.406    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       70        70   0.00091  102 3  11 22  0.47    28
                                                     29  0.41    29


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  522 (56 KB)
  Total size of DFA:  100 KB (2071 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  7.98u 0.11s 8.09t   Elapsed:  00:00:01
  Total cpu time:  7.98u 0.11s 8.09t   Elapsed:  00:00:01
  Start:  Mon May 20 17:20:09 2013   End:  Mon May 20 17:20:10 2013

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