Query 039998
Match_columns 70
No_of_seqs 35 out of 37
Neff 3.5
Searched_HMMs 46136
Date Fri Mar 29 04:06:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039998.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039998hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3105 Uncharacterized protei 91.8 0.34 7.4E-06 34.2 4.2 33 13-45 4-36 (138)
2 PRK11677 hypothetical protein; 88.0 1.6 3.4E-05 30.1 4.9 26 16-41 2-27 (134)
3 PF03672 UPF0154: Uncharacteri 86.2 2 4.3E-05 26.7 4.2 30 19-51 2-31 (64)
4 PF12273 RCR: Chitin synthesis 82.5 1.3 2.8E-05 29.1 2.4 29 16-44 1-29 (130)
5 PRK01844 hypothetical protein; 81.8 6.2 0.00013 25.1 5.2 35 14-51 3-38 (72)
6 PRK00523 hypothetical protein; 80.7 7.8 0.00017 24.7 5.4 27 22-51 13-39 (72)
7 COG5524 Bacteriorhodopsin [Gen 79.0 3.1 6.8E-05 32.2 3.8 32 11-42 151-183 (285)
8 PF10753 DUF2566: Protein of u 78.0 3.4 7.4E-05 25.2 3.0 21 17-37 6-26 (55)
9 PF06295 DUF1043: Protein of u 74.5 3.1 6.7E-05 27.7 2.4 23 20-42 2-24 (128)
10 PF04995 CcmD: Heme exporter p 70.7 16 0.00035 20.4 5.2 30 15-44 6-35 (46)
11 KOG3457 Sec61 protein transloc 70.5 5.8 0.00013 26.2 2.9 28 13-40 59-86 (88)
12 PF12273 RCR: Chitin synthesis 68.3 8.1 0.00018 25.3 3.3 24 17-40 5-28 (130)
13 PRK09272 hypothetical protein; 68.0 8.2 0.00018 25.8 3.3 23 19-41 2-24 (109)
14 PF12555 TPPK_C: Thiamine pyro 67.9 14 0.00029 21.5 3.9 34 11-44 10-43 (53)
15 TIGR01710 typeII_sec_gspG gene 64.8 21 0.00046 23.4 4.8 22 18-39 11-32 (134)
16 PRK10574 putative major pilin 63.8 24 0.00052 24.2 5.0 37 11-47 6-44 (146)
17 TIGR03141 cytochro_ccmD heme e 56.5 33 0.00073 19.1 5.0 33 16-49 8-40 (45)
18 PRK01844 hypothetical protein; 56.4 20 0.00043 22.8 3.3 11 20-30 14-24 (72)
19 PF05552 TM_helix: Conserved T 55.8 35 0.00077 19.1 4.3 35 16-50 13-47 (53)
20 PRK14473 F0F1 ATP synthase sub 55.6 29 0.00064 23.2 4.3 35 17-51 8-42 (164)
21 COG2165 PulG Type II secretory 54.4 42 0.0009 20.4 4.5 23 18-40 18-40 (149)
22 PRK13454 F0F1 ATP synthase sub 53.2 37 0.00081 23.5 4.6 48 3-50 13-64 (181)
23 PF07245 Phlebovirus_G2: Phleb 53.0 38 0.00083 27.8 5.3 33 13-45 465-498 (507)
24 PRK08476 F0F1 ATP synthase sub 52.9 34 0.00073 22.8 4.2 35 17-51 7-41 (141)
25 PF02313 Fumarate_red_D: Fumar 52.8 24 0.00053 24.2 3.5 23 13-35 95-117 (118)
26 PF04971 Lysis_S: Lysis protei 52.4 19 0.00041 22.7 2.8 25 11-37 27-53 (68)
27 cd00547 QFR_TypeD_subunitD Qui 52.3 12 0.00026 25.7 2.0 24 12-35 90-113 (115)
28 PF13231 PMT_2: Dolichyl-phosp 51.5 32 0.00069 21.2 3.7 32 13-44 18-49 (159)
29 PF11337 DUF3139: Protein of u 51.4 55 0.0012 20.0 5.2 16 35-50 33-48 (85)
30 PF11174 DUF2970: Protein of u 50.9 29 0.00064 20.6 3.3 25 16-40 30-54 (56)
31 PRK13461 F0F1 ATP synthase sub 50.6 39 0.00086 22.5 4.3 34 17-50 5-38 (159)
32 COG4327 Predicted membrane pro 49.2 22 0.00048 24.0 2.8 25 9-33 14-38 (101)
33 PF12304 BCLP: Beta-casein lik 49.1 1E+02 0.0022 22.8 6.4 58 11-69 69-132 (188)
34 PF15176 LRR19-TM: Leucine-ric 46.8 42 0.00091 22.7 3.9 29 10-39 10-38 (102)
35 PF08552 Kei1: Inositolphospho 46.3 37 0.00081 24.4 3.8 36 10-45 38-73 (189)
36 PF01102 Glycophorin_A: Glycop 45.9 45 0.00098 22.6 4.0 31 11-41 60-95 (122)
37 TIGR01006 polys_exp_MPA1 polys 44.6 26 0.00056 24.3 2.7 51 11-62 169-220 (226)
38 COG3125 CyoD Heme/copper-type 44.4 22 0.00048 24.1 2.3 17 18-34 18-34 (111)
39 KOG2592 Tumor differentially e 41.9 9.3 0.0002 31.2 0.2 34 3-36 160-208 (426)
40 KOG3251 Golgi SNAP receptor co 41.6 35 0.00075 25.5 3.2 21 16-36 190-210 (213)
41 PRK05470 fumarate reductase su 41.2 19 0.00041 24.8 1.6 24 12-35 93-116 (118)
42 PRK14475 F0F1 ATP synthase sub 40.3 78 0.0017 21.4 4.5 41 7-50 3-43 (167)
43 PF10828 DUF2570: Protein of u 40.1 1E+02 0.0022 19.8 4.9 19 15-33 2-20 (110)
44 PF15061 DUF4538: Domain of un 38.8 28 0.00061 21.3 1.9 24 14-37 4-27 (58)
45 PRK10582 cytochrome o ubiquino 37.8 33 0.00071 22.9 2.3 17 19-35 17-33 (109)
46 PF10183 ESSS: ESSS subunit of 37.8 63 0.0014 20.9 3.6 43 6-48 49-97 (105)
47 PRK13453 F0F1 ATP synthase sub 37.4 81 0.0017 21.5 4.3 34 17-50 18-51 (173)
48 TIGR02908 CoxD_Bacillus cytoch 36.3 33 0.00071 23.2 2.1 16 19-34 27-42 (110)
49 TIGR02901 QoxD cytochrome aa3 35.9 35 0.00075 22.2 2.1 14 20-33 9-22 (94)
50 PF11688 DUF3285: Protein of u 35.9 55 0.0012 19.3 2.8 26 11-36 20-45 (45)
51 PRK14471 F0F1 ATP synthase sub 35.6 89 0.0019 20.8 4.2 34 17-50 8-41 (164)
52 PF09604 Potass_KdpF: F subuni 35.2 41 0.00089 17.3 2.0 15 21-35 2-16 (25)
53 PF04066 MrpF_PhaF: Multiple r 35.1 44 0.00096 19.1 2.3 21 16-36 35-55 (55)
54 PF04911 ATP-synt_J: ATP synth 34.9 73 0.0016 19.3 3.3 26 15-44 9-34 (54)
55 KOG3269 Predicted membrane pro 34.5 36 0.00077 25.0 2.2 34 10-43 47-80 (180)
56 TIGR02206 intg_mem_TP0381 cons 34.5 1.2E+02 0.0027 21.7 5.0 26 11-36 5-30 (222)
57 PF07172 GRP: Glycine rich pro 34.4 73 0.0016 20.5 3.5 23 19-41 6-28 (95)
58 PF06103 DUF948: Bacterial pro 34.3 1.1E+02 0.0023 18.5 4.6 28 18-45 4-31 (90)
59 COG0332 FabH 3-oxoacyl-[acyl-c 33.5 22 0.00047 27.5 1.0 34 34-67 56-90 (323)
60 PF10661 EssA: WXG100 protein 33.2 57 0.0012 22.5 3.0 18 21-40 125-142 (145)
61 PF08374 Protocadherin: Protoc 33.0 20 0.00043 27.1 0.7 20 21-40 43-62 (221)
62 COG3117 Uncharacterized protei 32.9 55 0.0012 24.0 3.0 22 13-34 2-23 (188)
63 TIGR03717 R_switched_YjbE inte 32.6 1E+02 0.0023 21.5 4.3 29 16-44 125-153 (176)
64 PF13829 DUF4191: Domain of un 32.5 1.2E+02 0.0026 22.8 4.7 34 15-48 51-85 (224)
65 PF11694 DUF3290: Protein of u 32.3 80 0.0017 21.9 3.6 34 10-43 10-43 (149)
66 TIGR02058 lin0512_fam conserve 32.2 43 0.00094 22.9 2.2 17 34-50 18-34 (116)
67 PF13974 YebO: YebO-like prote 32.1 65 0.0014 20.8 2.9 23 19-41 3-25 (80)
68 TIGR02847 CyoD cytochrome o ub 31.9 44 0.00096 21.7 2.1 15 19-33 6-20 (96)
69 PF06609 TRI12: Fungal trichot 31.6 46 0.001 27.7 2.7 21 12-32 192-212 (599)
70 KOG2533 Permease of the major 31.6 22 0.00047 28.6 0.8 26 7-32 197-222 (495)
71 PRK13460 F0F1 ATP synthase sub 31.5 1.1E+02 0.0024 20.7 4.2 31 20-50 19-49 (173)
72 PF09753 Use1: Membrane fusion 31.4 55 0.0012 23.5 2.8 23 14-37 228-250 (251)
73 PF13807 GNVR: G-rich domain o 31.4 79 0.0017 18.9 3.1 25 10-34 52-76 (82)
74 PRK05759 F0F1 ATP synthase sub 31.3 95 0.0021 20.2 3.7 30 22-51 9-38 (156)
75 PF01036 Bac_rhodopsin: Bacter 31.3 58 0.0012 22.8 2.8 33 11-43 119-151 (222)
76 PHA02650 hypothetical protein; 30.8 72 0.0016 20.8 3.0 16 28-43 63-78 (81)
77 PF11188 DUF2975: Protein of u 30.7 1.4E+02 0.0029 18.5 4.3 40 7-47 13-52 (136)
78 TIGR03321 alt_F1F0_F0_B altern 30.4 1.1E+02 0.0024 21.9 4.2 35 17-51 5-39 (246)
79 PRK08475 F0F1 ATP synthase sub 30.3 1.3E+02 0.0028 20.5 4.4 33 17-50 23-55 (167)
80 PF11210 DUF2996: Protein of u 30.2 58 0.0012 22.5 2.6 29 40-68 17-48 (119)
81 PRK06231 F0F1 ATP synthase sub 30.2 1.2E+02 0.0026 21.6 4.3 35 17-51 48-82 (205)
82 COG3332 Uncharacterized conser 29.5 14 0.00031 28.5 -0.5 17 35-51 161-177 (270)
83 COG3116 FtsL Cell division pro 28.8 1.5E+02 0.0034 20.1 4.4 33 18-50 25-60 (105)
84 PF05653 Mg_trans_NIPA: Magnes 28.8 45 0.00099 24.9 2.0 29 7-35 263-291 (300)
85 PF09585 Lin0512_fam: Conserve 28.7 55 0.0012 22.2 2.2 17 34-50 18-34 (113)
86 PRK14788 lipoprotein signal pe 28.6 97 0.0021 22.4 3.7 24 15-38 59-82 (200)
87 PF00430 ATP-synt_B: ATP synth 28.5 1E+02 0.0023 19.1 3.4 28 24-51 6-33 (132)
88 PHA02819 hypothetical protein; 28.2 1.4E+02 0.0031 19.0 3.9 18 14-31 43-60 (71)
89 KOG0897 Predicted ubiquitin-co 27.5 57 0.0012 22.7 2.2 22 6-29 55-76 (122)
90 PF10389 CoatB: Bacteriophage 27.1 1.1E+02 0.0024 17.8 3.1 22 20-41 24-45 (46)
91 PRK14474 F0F1 ATP synthase sub 27.0 1.4E+02 0.003 21.9 4.3 35 17-51 5-39 (250)
92 PF09911 DUF2140: Uncharacteri 26.9 78 0.0017 22.3 2.9 17 14-32 2-18 (187)
93 PF11714 Inhibitor_I53: Thromb 26.8 70 0.0015 20.7 2.4 20 16-35 3-22 (78)
94 PHA02337 putative high light i 26.6 58 0.0013 18.1 1.7 17 11-29 6-22 (35)
95 PRK00376 lspA lipoprotein sign 26.3 1.3E+02 0.0027 20.7 3.7 26 14-39 66-91 (160)
96 PF13061 DUF3923: Protein of u 26.0 1.4E+02 0.003 18.2 3.5 29 6-34 29-58 (66)
97 PF00957 Synaptobrevin: Synapt 25.8 1.3E+02 0.0029 18.0 3.4 18 16-33 67-84 (89)
98 PF14159 CAAD: CAAD domains of 25.8 1.3E+02 0.0029 19.1 3.5 33 11-43 11-43 (90)
99 PRK07352 F0F1 ATP synthase sub 25.7 1.6E+02 0.0034 19.9 4.1 28 24-51 26-53 (174)
100 PRK04125 murein hydrolase regu 25.4 2.1E+02 0.0046 19.8 4.8 29 15-43 90-118 (141)
101 PF12911 OppC_N: N-terminal TM 25.1 62 0.0013 17.8 1.7 27 9-35 9-35 (56)
102 PRK03427 cell division protein 25.1 76 0.0016 25.1 2.7 19 14-32 4-22 (333)
103 COG4768 Uncharacterized protei 25.0 2.2E+02 0.0047 20.2 4.8 31 17-48 2-35 (139)
104 PRK01658 holin-like protein; V 25.0 2.2E+02 0.0047 19.0 4.6 30 14-43 86-115 (122)
105 PF12575 DUF3753: Protein of u 24.7 1.3E+02 0.0027 19.2 3.2 20 14-33 45-64 (72)
106 CHL00019 atpF ATP synthase CF0 24.5 1.5E+02 0.0033 20.3 3.9 34 18-51 25-58 (184)
107 KOG2551 Phospholipase/carboxyh 24.2 56 0.0012 24.7 1.8 20 40-59 93-113 (230)
108 PRK09174 F0F1 ATP synthase sub 24.1 1.8E+02 0.0038 20.8 4.3 23 28-50 64-86 (204)
109 PRK10712 PTS system fructose-s 24.1 1.1E+02 0.0024 25.4 3.6 33 17-49 530-562 (563)
110 PF09775 Keratin_assoc: Kerati 24.0 1.1E+02 0.0025 21.3 3.2 27 11-37 29-55 (131)
111 COG4059 MtrE Tetrahydromethano 24.0 54 0.0012 25.6 1.7 37 14-50 260-296 (304)
112 TIGR01708 typeII_sec_gspH gene 23.9 2.1E+02 0.0045 18.3 4.6 25 11-35 5-31 (143)
113 PF12729 4HB_MCP_1: Four helix 23.8 1.8E+02 0.0039 17.7 4.1 17 23-39 11-27 (181)
114 TIGR02115 potass_kdpF K+-trans 23.8 74 0.0016 16.6 1.7 15 21-35 1-15 (26)
115 COG3694 ABC-type uncharacteriz 23.7 2E+02 0.0043 22.3 4.7 34 13-48 225-258 (260)
116 TIGR00903 2A0129 major facilit 23.5 1.1E+02 0.0024 22.5 3.3 21 13-33 141-161 (368)
117 PRK14472 F0F1 ATP synthase sub 23.3 2E+02 0.0043 19.5 4.2 27 24-50 25-51 (175)
118 PF07664 FeoB_C: Ferrous iron 23.2 1.5E+02 0.0033 16.7 3.2 19 17-39 3-21 (54)
119 TIGR03007 pepcterm_ChnLen poly 23.1 90 0.0019 24.0 2.8 51 11-62 408-459 (498)
120 PLN03168 chalcone synthase; Pr 23.1 1.5E+02 0.0031 22.9 3.9 36 33-69 100-140 (389)
121 PRK12880 3-oxoacyl-(acyl carri 23.1 44 0.00095 25.2 1.1 35 34-68 60-99 (353)
122 PF15058 Speriolin_N: Sperioli 23.0 2E+02 0.0043 21.5 4.5 39 30-68 29-70 (200)
123 COG5074 t-SNARE complex subuni 22.9 52 0.0011 25.7 1.5 24 14-37 248-271 (280)
124 COG3462 Predicted membrane pro 22.9 1.2E+02 0.0026 21.0 3.1 19 17-35 8-26 (117)
125 COG4413 Utp Urea transporter [ 22.9 96 0.0021 24.6 2.9 29 12-40 90-118 (319)
126 PF13664 DUF4149: Domain of un 22.2 1.9E+02 0.0041 17.4 4.7 36 9-44 63-98 (101)
127 PRK10772 cell division protein 22.1 2.5E+02 0.0055 18.7 5.0 27 20-46 29-55 (108)
128 COG3932 Uncharacterized ABC-ty 22.0 1.4E+02 0.003 22.5 3.4 25 18-42 173-197 (209)
129 PF12409 P5-ATPase: P5-type AT 21.8 1.7E+02 0.0037 18.8 3.5 29 11-39 11-39 (119)
130 PRK14759 potassium-transportin 21.7 1.5E+02 0.0032 16.0 2.7 16 20-35 5-20 (29)
131 KOG1277 Endosomal membrane pro 21.7 1.3E+02 0.0029 25.6 3.7 29 17-45 235-263 (593)
132 PF05568 ASFV_J13L: African sw 21.3 2.4E+02 0.0052 20.7 4.6 22 11-32 25-46 (189)
133 COG4856 Uncharacterized protei 20.5 56 0.0012 26.7 1.2 24 14-37 6-29 (403)
134 PF09801 SYS1: Integral membra 20.4 1.8E+02 0.0039 19.9 3.6 31 11-43 110-140 (144)
135 TIGR02758 TraA_TIGR type IV co 20.0 1.6E+02 0.0035 19.5 3.2 20 11-30 44-63 (93)
No 1
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.76 E-value=0.34 Score=34.19 Aligned_cols=33 Identities=21% Similarity=0.576 Sum_probs=29.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039998 13 SATRWVYMALGFVISVILMVCVAKVAKASLDKS 45 (70)
Q Consensus 13 S~~~W~~~~vGlVaTVvv~vyVTrvAr~AL~~a 45 (70)
+..-|.+.++|||+.|++...+.|+-++++.+.
T Consensus 4 t~~~W~~a~igLvvGi~IG~li~Rlt~~~~k~q 36 (138)
T COG3105 4 TFMTWEYALIGLVVGIIIGALIARLTNRKLKQQ 36 (138)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcchhhhhH
Confidence 566799999999999999999999999998874
No 2
>PRK11677 hypothetical protein; Provisional
Probab=87.96 E-value=1.6 Score=30.15 Aligned_cols=26 Identities=19% Similarity=0.588 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039998 16 RWVYMALGFVISVILMVCVAKVAKAS 41 (70)
Q Consensus 16 ~W~~~~vGlVaTVvv~vyVTrvAr~A 41 (70)
.|++.++|||+.+++.+++-|.-.+.
T Consensus 2 ~W~~a~i~livG~iiG~~~~R~~~~~ 27 (134)
T PRK11677 2 TWEYALIGLVVGIIIGAVAMRFGNRK 27 (134)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhccch
Confidence 39999999999999999999985443
No 3
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=86.25 E-value=2 Score=26.72 Aligned_cols=30 Identities=20% Similarity=0.430 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 039998 19 YMALGFVISVILMVCVAKVAKASLDKSLIENGE 51 (70)
Q Consensus 19 ~~~vGlVaTVvv~vyVTrvAr~AL~~ai~E~~d 51 (70)
+++++|++.++..+|+ ||+-+.+++.||..
T Consensus 2 ~iilali~G~~~Gff~---ar~~~~k~l~~NPp 31 (64)
T PF03672_consen 2 LIILALIVGAVIGFFI---ARKYMEKQLKENPP 31 (64)
T ss_pred hHHHHHHHHHHHHHHH---HHHHHHHHHHHCCC
Confidence 4678888888888886 88999999999874
No 4
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=82.54 E-value=1.3 Score=29.13 Aligned_cols=29 Identities=17% Similarity=0.338 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039998 16 RWVYMALGFVISVILMVCVAKVAKASLDK 44 (70)
Q Consensus 16 ~W~~~~vGlVaTVvv~vyVTrvAr~AL~~ 44 (70)
||+|.++=+++-+++++.+-+++||=.++
T Consensus 1 RW~l~~iii~~i~l~~~~~~~~~rRR~r~ 29 (130)
T PF12273_consen 1 RWVLFAIIIVAILLFLFLFYCHNRRRRRR 29 (130)
T ss_pred CeeeHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 67776555555555555555666666555
No 5
>PRK01844 hypothetical protein; Provisional
Probab=81.77 E-value=6.2 Score=25.12 Aligned_cols=35 Identities=17% Similarity=0.073 Sum_probs=25.7
Q ss_pred hHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 039998 14 ATRWV-YMALGFVISVILMVCVAKVAKASLDKSLIENGE 51 (70)
Q Consensus 14 ~~~W~-~~~vGlVaTVvv~vyVTrvAr~AL~~ai~E~~d 51 (70)
.|-|+ +.+++|++.++..+|+ ||+-..+++.||..
T Consensus 3 ~~~~I~l~I~~li~G~~~Gff~---ark~~~k~lk~NPp 38 (72)
T PRK01844 3 IWLGILVGVVALVAGVALGFFI---ARKYMMNYLQKNPP 38 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHCCC
Confidence 34443 3456777777788775 78999999999864
No 6
>PRK00523 hypothetical protein; Provisional
Probab=80.72 E-value=7.8 Score=24.66 Aligned_cols=27 Identities=22% Similarity=0.218 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 039998 22 LGFVISVILMVCVAKVAKASLDKSLIENGE 51 (70)
Q Consensus 22 vGlVaTVvv~vyVTrvAr~AL~~ai~E~~d 51 (70)
++|++.++..+| +||+-..+++.||-.
T Consensus 13 ~~li~G~~~Gff---iark~~~k~l~~NPp 39 (72)
T PRK00523 13 PLLIVGGIIGYF---VSKKMFKKQIRENPP 39 (72)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHCcC
Confidence 345555556665 578999999999875
No 7
>COG5524 Bacteriorhodopsin [General function prediction only]
Probab=79.03 E-value=3.1 Score=32.24 Aligned_cols=32 Identities=28% Similarity=0.423 Sum_probs=24.1
Q ss_pred ccchHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 039998 11 EISATRWVYMALGFVI-SVILMVCVAKVAKASL 42 (70)
Q Consensus 11 e~S~~~W~~~~vGlVa-TVvv~vyVTrvAr~AL 42 (70)
..|+-||++|++|+++ -|++...+|.-.+++-
T Consensus 151 ~~~tykW~~y~ig~~a~lvvl~~l~~~~~~~a~ 183 (285)
T COG5524 151 THSTYKWAYYAIGAAAFLVVLAVLVTGFFAKAK 183 (285)
T ss_pred hchhhhHHHHHHHHHHHHHHHHHHHhhhhhhhc
Confidence 6789999999999999 5555566666655553
No 8
>PF10753 DUF2566: Protein of unknown function (DUF2566); InterPro: IPR019689 This entry is represented by Pseudomonas phage PaP3, Orf56. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=77.95 E-value=3.4 Score=25.16 Aligned_cols=21 Identities=29% Similarity=0.540 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 039998 17 WVYMALGFVISVILMVCVAKV 37 (70)
Q Consensus 17 W~~~~vGlVaTVvv~vyVTrv 37 (70)
+.+|.+|.+.+.+.+.+++|=
T Consensus 6 l~~Y~ig~~is~~iT~flskD 26 (55)
T PF10753_consen 6 LIFYAIGAVISALITFFLSKD 26 (55)
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 579999999999999999874
No 9
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=74.54 E-value=3.1 Score=27.72 Aligned_cols=23 Identities=13% Similarity=0.431 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 039998 20 MALGFVISVILMVCVAKVAKASL 42 (70)
Q Consensus 20 ~~vGlVaTVvv~vyVTrvAr~AL 42 (70)
.++|||+.+++.+++.|..++..
T Consensus 2 ~~i~lvvG~iiG~~~~r~~~~~~ 24 (128)
T PF06295_consen 2 AIIGLVVGLIIGFLIGRLTSSNQ 24 (128)
T ss_pred hHHHHHHHHHHHHHHHHHhccch
Confidence 56788888888888888876554
No 10
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=70.72 E-value=16 Score=20.38 Aligned_cols=30 Identities=10% Similarity=0.122 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039998 15 TRWVYMALGFVISVILMVCVAKVAKASLDK 44 (70)
Q Consensus 15 ~~W~~~~vGlVaTVvv~vyVTrvAr~AL~~ 44 (70)
.=|.-|++.|++-+.+++..-+-.|+..++
T Consensus 6 yVW~sYg~t~~~l~~l~~~~~~~~r~~~~~ 35 (46)
T PF04995_consen 6 YVWSSYGVTALVLAGLIVWSLRRRRRLRKE 35 (46)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 448888888887777666655544444433
No 11
>KOG3457 consensus Sec61 protein translocation complex, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=70.52 E-value=5.8 Score=26.21 Aligned_cols=28 Identities=21% Similarity=0.387 Sum_probs=23.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039998 13 SATRWVYMALGFVISVILMVCVAKVAKA 40 (70)
Q Consensus 13 S~~~W~~~~vGlVaTVvv~vyVTrvAr~ 40 (70)
++.--.++-+||+++|.+.=.+.|+.|+
T Consensus 59 ~PvvVLvmSvgFIasV~~LHi~gK~~~~ 86 (88)
T KOG3457|consen 59 DPVVVLVMSVGFIASVFALHIWGKLTRS 86 (88)
T ss_pred CCeeehhhhHHHHHHHHHHHHHHHHhhc
Confidence 3444567889999999999999998874
No 12
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=68.26 E-value=8.1 Score=25.30 Aligned_cols=24 Identities=8% Similarity=0.397 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 039998 17 WVYMALGFVISVILMVCVAKVAKA 40 (70)
Q Consensus 17 W~~~~vGlVaTVvv~vyVTrvAr~ 40 (70)
|+++++.|+.-++++.|++|==||
T Consensus 5 ~~iii~~i~l~~~~~~~~~rRR~r 28 (130)
T PF12273_consen 5 FAIIIVAILLFLFLFYCHNRRRRR 28 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 788899999999999998875443
No 13
>PRK09272 hypothetical protein; Provisional
Probab=68.02 E-value=8.2 Score=25.79 Aligned_cols=23 Identities=26% Similarity=0.699 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 039998 19 YMALGFVISVILMVCVAKVAKAS 41 (70)
Q Consensus 19 ~~~vGlVaTVvv~vyVTrvAr~A 41 (70)
++++-.+.|..+++.++.+|||+
T Consensus 2 ~~~~K~lisa~iIv~iSeiAkR~ 24 (109)
T PRK09272 2 FLIVKYLISALIIVAITEIAKRS 24 (109)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhc
Confidence 56788899999999999999997
No 14
>PF12555 TPPK_C: Thiamine pyrophosphokinase C terminal; InterPro: IPR022215 This domain family is found in bacteria, and is approximately 50 amino acids in length. The proteins in this family catalyses the pyrophosphorylation of thiamine in yeast and synthesizes thiamine pyrophosphate (TPP), a thiamine coenzyme.
Probab=67.95 E-value=14 Score=21.50 Aligned_cols=34 Identities=18% Similarity=0.277 Sum_probs=29.0
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039998 11 EISATRWVYMALGFVISVILMVCVAKVAKASLDK 44 (70)
Q Consensus 11 e~S~~~W~~~~vGlVaTVvv~vyVTrvAr~AL~~ 44 (70)
..|.+.|++..++-+..+++.++++...+.-++-
T Consensus 10 ris~~~~~~lvlaaLvav~v~l~~s~~g~~~~~~ 43 (53)
T PF12555_consen 10 RISGWALALLVLAALVAVAVALLISPAGQSFLDL 43 (53)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHhCccHHHHHHH
Confidence 5678899999999999999999999998766554
No 15
>TIGR01710 typeII_sec_gspG general secretion pathway protein G. This model represents GspG, protein G of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=64.83 E-value=21 Score=23.41 Aligned_cols=22 Identities=18% Similarity=0.345 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 039998 18 VYMALGFVISVILMVCVAKVAK 39 (70)
Q Consensus 18 ~~~~vGlVaTVvv~vyVTrvAr 39 (70)
++.++|+++++++--+...+.|
T Consensus 11 vlaIigil~~i~~p~~~~~~~~ 32 (134)
T TIGR01710 11 VLVILGLLAALVAPKLFSQADK 32 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5678899999888877776554
No 16
>PRK10574 putative major pilin subunit; Provisional
Probab=63.84 E-value=24 Score=24.23 Aligned_cols=37 Identities=14% Similarity=0.132 Sum_probs=27.5
Q ss_pred ccchHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039998 11 EISATRW--VYMALGFVISVILMVCVAKVAKASLDKSLI 47 (70)
Q Consensus 11 e~S~~~W--~~~~vGlVaTVvv~vyVTrvAr~AL~~ai~ 47 (70)
.|+-.+. ++-++|+++++++--|-..+.|..+.+.+.
T Consensus 6 GFTLIELmIViaIigILaaiaiP~~~~~~~~a~~~~~~~ 44 (146)
T PRK10574 6 GFTLIELMVVIAIIAILSAIGIPAYQNYLQKAALTDMLQ 44 (146)
T ss_pred ceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444 456899999999999998888877766543
No 17
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=56.55 E-value=33 Score=19.09 Aligned_cols=33 Identities=9% Similarity=0.165 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 039998 16 RWVYMALGFVISVILMVCVAKVAKASLDKSLIEN 49 (70)
Q Consensus 16 ~W~~~~vGlVaTVvv~vyVTrvAr~AL~~ai~E~ 49 (70)
=|.-|++.|++-+ ..+..+...||++.+.+++.
T Consensus 8 VW~sYg~t~l~l~-~li~~~~~~~r~~~~~l~~~ 40 (45)
T TIGR03141 8 VWLAYGITALVLA-GLILWSLLDRRRLLRELRRL 40 (45)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 4777888777555 34455667777777777654
No 18
>PRK01844 hypothetical protein; Provisional
Probab=56.36 E-value=20 Score=22.81 Aligned_cols=11 Identities=9% Similarity=0.474 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q 039998 20 MALGFVISVIL 30 (70)
Q Consensus 20 ~~vGlVaTVvv 30 (70)
.++|++....+
T Consensus 14 li~G~~~Gff~ 24 (72)
T PRK01844 14 LVAGVALGFFI 24 (72)
T ss_pred HHHHHHHHHHH
Confidence 34444444333
No 19
>PF05552 TM_helix: Conserved TM helix; InterPro: IPR008910 This alignment represents a conserved transmembrane helix as well as some flanking sequence. It is often found in association with a Mechanosensitive (MS) channel IPR006685 from INTERPRO.; PDB: 2VV5_F 2OAU_E.
Probab=55.77 E-value=35 Score=19.15 Aligned_cols=35 Identities=20% Similarity=0.295 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 039998 16 RWVYMALGFVISVILMVCVAKVAKASLDKSLIENG 50 (70)
Q Consensus 16 ~W~~~~vGlVaTVvv~vyVTrvAr~AL~~ai~E~~ 50 (70)
.+.-.++|.+.-.++..++-|+.++.+++.+...+
T Consensus 13 ~~lP~iv~AilIl~vG~~va~~v~~~~~~~l~~~~ 47 (53)
T PF05552_consen 13 AYLPNIVGAILILIVGWWVAKFVRKLVRRLLEKRG 47 (53)
T ss_dssp GGHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 44556777777788888999999999999888765
No 20
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=55.62 E-value=29 Score=23.18 Aligned_cols=35 Identities=9% Similarity=0.039 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 039998 17 WVYMALGFVISVILMVCVAKVAKASLDKSLIENGE 51 (70)
Q Consensus 17 W~~~~vGlVaTVvv~vyVTrvAr~AL~~ai~E~~d 51 (70)
|..++.-++..+++++.+.|+..+-+.+.+.+..+
T Consensus 8 ~~~~~~~~inflil~~lL~~fl~kpi~~~l~~R~~ 42 (164)
T PRK14473 8 LGLLIAQLINFLLLIFLLRTFLYRPVLNLLNERTR 42 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556677788889999999999999998888663
No 21
>COG2165 PulG Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=54.39 E-value=42 Score=20.38 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 039998 18 VYMALGFVISVILMVCVAKVAKA 40 (70)
Q Consensus 18 ~~~~vGlVaTVvv~vyVTrvAr~ 40 (70)
++.++|+++++++--+.....|.
T Consensus 18 vl~Iigil~~~~~p~~~~~~~~~ 40 (149)
T COG2165 18 VLAIIGILAALALPSLQGSIDKA 40 (149)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHH
Confidence 57789999999887776555444
No 22
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=53.19 E-value=37 Score=23.52 Aligned_cols=48 Identities=13% Similarity=0.108 Sum_probs=28.6
Q ss_pred cccccCccccchHHH---HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 039998 3 SDVTHGWNEISATRW---VY-MALGFVISVILMVCVAKVAKASLDKSLIENG 50 (70)
Q Consensus 3 sdvthg~~e~S~~~W---~~-~~vGlVaTVvv~vyVTrvAr~AL~~ai~E~~ 50 (70)
++..||.......-| .. ++.-++..+++++++.|+.-+=+.+.+.++.
T Consensus 13 ~~~~~~~~gmp~ld~~t~~~q~~~~lI~F~iL~~ll~k~l~~PI~~~l~~R~ 64 (181)
T PRK13454 13 AGHAASAPGMPQLDFSTFPNQIFWLLVTLVAIYFVLTRVALPRIGAVLAERQ 64 (181)
T ss_pred cccccCCCCCCCCcHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677664333333 22 2233555666777778888777777777755
No 23
>PF07245 Phlebovirus_G2: Phlebovirus glycoprotein G2; InterPro: IPR009878 This domain is found in several Phlebovirus glycoprotein G2 sequences. Members of the Bunyaviridae family acquire an envelope by budding through the lipid bilayer of the Golgi complex. The budding compartment is thought to be determined by the accumulation of the two heterodimeric membrane glycoproteins G1 and G2 in the Golgi [].
Probab=53.02 E-value=38 Score=27.79 Aligned_cols=33 Identities=21% Similarity=0.398 Sum_probs=21.1
Q ss_pred chHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 039998 13 SATRWVYMALGFVISVIL-MVCVAKVAKASLDKS 45 (70)
Q Consensus 13 S~~~W~~~~vGlVaTVvv-~vyVTrvAr~AL~~a 45 (70)
.+++|+++++||++-.++ ++.+..++|..+.+.
T Consensus 465 g~~~~~~~Il~~l~i~~~~~~~~i~~~~~~~~~~ 498 (507)
T PF07245_consen 465 GPWKTILIILGFLIIGILIFVLLIFICRSGVKQV 498 (507)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888998887555 444445555555554
No 24
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=52.95 E-value=34 Score=22.81 Aligned_cols=35 Identities=20% Similarity=0.150 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 039998 17 WVYMALGFVISVILMVCVAKVAKASLDKSLIENGE 51 (70)
Q Consensus 17 W~~~~vGlVaTVvv~vyVTrvAr~AL~~ai~E~~d 51 (70)
|..++.-++..+++++.+.|++-+=+.+.+.+.++
T Consensus 7 ~~~~~~qli~Flil~~~l~kfl~kPi~~~l~~R~~ 41 (141)
T PRK08476 7 PYLMLATFVVFLLLIVILNSWLYKPLLKFMDNRNA 41 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566778888899999999998888888888653
No 25
>PF02313 Fumarate_red_D: Fumarate reductase subunit D; InterPro: IPR003418 Fumarate reductase is a membrane-bound flavoenzyme consisting of four subunits, A-B. A and B comprise the membrane-extrinsic catalytic domain and C and D link the catalytic centres to the electron-transport chain. This family consists of the 13kDa hydrophobic subunit D. This component may be required to anchor the catalytic components of the fumarate reductase complex to the cytoplasmic membrane.; GO: 0006106 fumarate metabolic process, 0016020 membrane; PDB: 3P4R_P 1KF6_P 3P4Q_P 3P4S_D 3CIR_P 2B76_D 1L0V_P 3P4P_D 1KFY_P.
Probab=52.80 E-value=24 Score=24.21 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=19.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHH
Q 039998 13 SATRWVYMALGFVISVILMVCVA 35 (70)
Q Consensus 13 S~~~W~~~~vGlVaTVvv~vyVT 35 (70)
...+|++|+...+.|++..+.+-
T Consensus 95 ~~~~~~~YG~A~l~svva~~~v~ 117 (118)
T PF02313_consen 95 PAGKWVCYGLAALGSVVALILVL 117 (118)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHh
Confidence 56899999999999999887763
No 26
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=52.39 E-value=19 Score=22.68 Aligned_cols=25 Identities=16% Similarity=0.586 Sum_probs=15.2
Q ss_pred ccchHHHHHHHHHHHHHHH--HHHHHHHH
Q 039998 11 EISATRWVYMALGFVISVI--LMVCVAKV 37 (70)
Q Consensus 11 e~S~~~W~~~~vGlVaTVv--v~vyVTrv 37 (70)
.+|+.||..+ |++.+++ +.-|+|.+
T Consensus 27 ~~sp~qW~aI--Gvi~gi~~~~lt~ltN~ 53 (68)
T PF04971_consen 27 QFSPSQWAAI--GVIGGIFFGLLTYLTNL 53 (68)
T ss_pred ccCcccchhH--HHHHHHHHHHHHHHhHh
Confidence 7899999984 4444433 34455544
No 27
>cd00547 QFR_TypeD_subunitD Quinol:fumarate reductase (QFR) Type D subfamily, 13kD hydrophobic subunit D; QFR couples the reduction of fumarate to succinate to the oxidation of quinol to quinone, the opposite reaction to that catalyzed by the related protein, succinate:quinine oxidoreductase (SQR). QFRs oxidize low potential quinols such as menaquinol and are involved in anaerobic respiration with fumarate as the terminal electron acceptor. SQR and QFR share a common subunit arrangement, composed of a flavoprotein catalytic subunit, an iron-sulfur protein and one or two hydrophobic transmembrane subunits. Members of this subfamily are classified as Type D as they contain two transmembrane subunits (C and D) and no heme groups. The structural arrangement allows efficient electron transfer between the catalytic subunit, through iron-sulfur centers, and the transmembrane subunit containing the electron donor (quinol). The quinone binding site resides in the transmembrane subunits.
Probab=52.29 E-value=12 Score=25.67 Aligned_cols=24 Identities=21% Similarity=0.407 Sum_probs=20.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHH
Q 039998 12 ISATRWVYMALGFVISVILMVCVA 35 (70)
Q Consensus 12 ~S~~~W~~~~vGlVaTVvv~vyVT 35 (70)
....+|++|+..++.||+..+.+-
T Consensus 90 ~~~~~~~~Yg~A~l~sv~~~~~v~ 113 (115)
T cd00547 90 VPAGKIIFYGLAALYSVLALFAVF 113 (115)
T ss_pred cCccceehHHHHHHHHHHHHHHHh
Confidence 346799999999999999988764
No 28
>PF13231 PMT_2: Dolichyl-phosphate-mannose-protein mannosyltransferase
Probab=51.47 E-value=32 Score=21.22 Aligned_cols=32 Identities=9% Similarity=0.365 Sum_probs=27.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039998 13 SATRWVYMALGFVISVILMVCVAKVAKASLDK 44 (70)
Q Consensus 13 S~~~W~~~~vGlVaTVvv~vyVTrvAr~AL~~ 44 (70)
+...|++.....+.+++..+++-+++|+-.++
T Consensus 18 G~~~~~~~~~~~l~~~~~~~~~y~i~r~~~~~ 49 (159)
T PF13231_consen 18 GDSVWALRLFNILFSLLTLLLIYLIARRLFGR 49 (159)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHCCc
Confidence 34678999999999999999999999987653
No 29
>PF11337 DUF3139: Protein of unknown function (DUF3139); InterPro: IPR021486 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=51.43 E-value=55 Score=20.03 Aligned_cols=16 Identities=31% Similarity=0.374 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHhcC
Q 039998 35 AKVAKASLDKSLIENG 50 (70)
Q Consensus 35 TrvAr~AL~~ai~E~~ 50 (70)
-..|.++.+++++|.|
T Consensus 33 k~~~~k~i~~yL~e~g 48 (85)
T PF11337_consen 33 KHKAEKAIDWYLQEQG 48 (85)
T ss_pred HHHHHHHHHHHHHHcC
Confidence 4578999999999977
No 30
>PF11174 DUF2970: Protein of unknown function (DUF2970); InterPro: IPR021344 This short family is conserved in Proteobacteria. The function is not known.
Probab=50.91 E-value=29 Score=20.63 Aligned_cols=25 Identities=4% Similarity=0.316 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 039998 16 RWVYMALGFVISVILMVCVAKVAKA 40 (70)
Q Consensus 16 ~W~~~~vGlVaTVvv~vyVTrvAr~ 40 (70)
-|.+++.|++.++++...+-=+++-
T Consensus 30 p~~~Ii~gii~~~~fV~~Lv~lV~~ 54 (56)
T PF11174_consen 30 PVHFIIVGIILAALFVAGLVLLVNL 54 (56)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677889999998888776666553
No 31
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=50.56 E-value=39 Score=22.45 Aligned_cols=34 Identities=6% Similarity=0.039 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 039998 17 WVYMALGFVISVILMVCVAKVAKASLDKSLIENG 50 (70)
Q Consensus 17 W~~~~vGlVaTVvv~vyVTrvAr~AL~~ai~E~~ 50 (70)
|.-++.-++.-+++++.+.|++-+-+.+.+.+..
T Consensus 5 ~~~~~~~~inF~il~~iL~~f~~kpi~~~l~~R~ 38 (159)
T PRK13461 5 IPTIIATIINFIILLLILKHFFFDKIKAVIDSRQ 38 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4445556667778888888999888888888765
No 32
>COG4327 Predicted membrane protein [Function unknown]
Probab=49.16 E-value=22 Score=24.03 Aligned_cols=25 Identities=12% Similarity=0.405 Sum_probs=17.2
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHH
Q 039998 9 WNEISATRWVYMALGFVISVILMVC 33 (70)
Q Consensus 9 ~~e~S~~~W~~~~vGlVaTVvv~vy 33 (70)
|.++.++--++++++|+.|.+++.+
T Consensus 14 wranttli~~lL~vwflVSfvvi~f 38 (101)
T COG4327 14 WRANTTLIAALLGVWFLVSFVVILF 38 (101)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4555555557888888888777444
No 33
>PF12304 BCLP: Beta-casein like protein; InterPro: IPR020977 This entry represents eukaryotic proteins that are typically between 216 to 240 amino acids in length which have two conserved sequence motifs: VLR and TRIY. Beta-casein-like protein is associated with cell morphology and a regulation of growth pattern of tumours. It is found in adenocarcinomas of uterine cervical tissues[].
Probab=49.10 E-value=1e+02 Score=22.84 Aligned_cols=58 Identities=12% Similarity=0.382 Sum_probs=40.9
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----cceeccC--CCCCCCCCCCC
Q 039998 11 EISATRWVYMALGFVISVILMVCVAKVAKASLDKSLIENGE----KCIMGQS--MLPAGPESPLD 69 (70)
Q Consensus 11 e~S~~~W~~~~vGlVaTVvv~vyVTrvAr~AL~~ai~E~~d----~~~~~~~--~l~i~~~~~~d 69 (70)
.+.+.||.+..++|.+..+-.-|..-+.-. ....+...|. .|-...+ ..|+.+|=|.|
T Consensus 69 ~~~~L~W~Ll~~S~ln~LlSaAc~vGL~~a-i~~Tv~~~Gr~Ll~~C~f~~~~~~~~it~dCPFD 132 (188)
T PF12304_consen 69 RNRPLHWTLLVVSLLNALLSAACAVGLLLA-ISLTVANQGRNLLAGCNFTNLNALSSITNDCPFD 132 (188)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCchhHhhcCCCCChhhccCCCCCCCCC
Confidence 566889999999999998888887776643 3344444553 4444444 67888888877
No 34
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=46.76 E-value=42 Score=22.67 Aligned_cols=29 Identities=14% Similarity=0.448 Sum_probs=18.7
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039998 10 NEISATRWVYMALGFVISVILMVCVAKVAK 39 (70)
Q Consensus 10 ~e~S~~~W~~~~vGlVaTVvv~vyVTrvAr 39 (70)
.+.+..-|.|+ +|+|.+++++-++--+|-
T Consensus 10 ~~~~g~sW~~L-VGVv~~al~~SlLIalaa 38 (102)
T PF15176_consen 10 PGEGGRSWPFL-VGVVVTALVTSLLIALAA 38 (102)
T ss_pred CCCCCcccHhH-HHHHHHHHHHHHHHHHHH
Confidence 34446678885 788877777666555543
No 35
>PF08552 Kei1: Inositolphosphorylceramide synthase subunit Kei1; InterPro: IPR013862 This entry indicates Golgi proteins of unknown function.
Probab=46.26 E-value=37 Score=24.39 Aligned_cols=36 Identities=11% Similarity=0.087 Sum_probs=29.0
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039998 10 NEISATRWVYMALGFVISVILMVCVAKVAKASLDKS 45 (70)
Q Consensus 10 ~e~S~~~W~~~~vGlVaTVvv~vyVTrvAr~AL~~a 45 (70)
.+-|.+||.+|+-.+++-++...++-.|-|+...+.
T Consensus 38 ~~ls~~Q~s~YlySi~~L~~~~~~l~~Irk~~~~~~ 73 (189)
T PF08552_consen 38 HPLSFLQLSMYLYSILALVLFAWGLPHIRKQSPLQC 73 (189)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhHHhccCCHHHH
Confidence 467899999999999988888888777777665544
No 36
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=45.88 E-value=45 Score=22.65 Aligned_cols=31 Identities=19% Similarity=0.329 Sum_probs=18.1
Q ss_pred ccchHHHHHHHHHHHHHHHHHHH-----HHHHHHHH
Q 039998 11 EISATRWVYMALGFVISVILMVC-----VAKVAKAS 41 (70)
Q Consensus 11 e~S~~~W~~~~vGlVaTVvv~vy-----VTrvAr~A 41 (70)
.||...-+.+++|.+|.|+.+++ +-|.-||.
T Consensus 60 ~fs~~~i~~Ii~gv~aGvIg~Illi~y~irR~~Kk~ 95 (122)
T PF01102_consen 60 RFSEPAIIGIIFGVMAGVIGIILLISYCIRRLRKKS 95 (122)
T ss_dssp SSS-TCHHHHHHHHHHHHHHHHHHHHHHHHHHS---
T ss_pred CccccceeehhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 45666678888888887776554 44555554
No 37
>TIGR01006 polys_exp_MPA1 polysaccharide export protein, MPA1 family, Gram-positive type. This family contains members from Low GC Gram-positive bacteria; they are proposed to have a function in the export of complex polysaccharides.
Probab=44.56 E-value=26 Score=24.26 Aligned_cols=51 Identities=16% Similarity=0.333 Sum_probs=36.0
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-cceeccCCCCC
Q 039998 11 EISATRWVYMALGFVISVILMVCVAKVAKASLDKSLIENGE-KCIMGQSMLPA 62 (70)
Q Consensus 11 e~S~~~W~~~~vGlVaTVvv~vyVTrvAr~AL~~ai~E~~d-~~~~~~~~l~i 62 (70)
..+|-++.++.+||++..++.+.+ =+.|..+++.+...+| +..++.|.|-.
T Consensus 169 p~~P~~~~~~~~g~~~G~~~~~~~-~~~~~~~d~~i~~~~d~~~~~~~~vlg~ 220 (226)
T TIGR01006 169 PSSPNPKRNLLIGFLLGLVVALII-VLLKELLDTRVKRPEDVEDVLGMTLLGI 220 (226)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHH-HHHHHHHhCCcCCHHHHHHHcCCCeEEE
Confidence 456677888889988888766544 3567788888887777 66666555533
No 38
>COG3125 CyoD Heme/copper-type cytochrome/quinol oxidase, subunit 4 [Energy production and conversion]
Probab=44.41 E-value=22 Score=24.13 Aligned_cols=17 Identities=35% Similarity=0.573 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 039998 18 VYMALGFVISVILMVCV 34 (70)
Q Consensus 18 ~~~~vGlVaTVvv~vyV 34 (70)
=-|.+||+.+|++|+.-
T Consensus 18 k~y~iGFvLsIiLT~ip 34 (111)
T COG3125 18 KSYLIGFVLSIILTLIP 34 (111)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35789999999998753
No 39
>KOG2592 consensus Tumor differentially expressed (TDE) protein [Function unknown]
Probab=41.91 E-value=9.3 Score=31.24 Aligned_cols=34 Identities=29% Similarity=0.468 Sum_probs=25.7
Q ss_pred cccccCcccc--------chHH-------HHHHHHHHHHHHHHHHHHHH
Q 039998 3 SDVTHGWNEI--------SATR-------WVYMALGFVISVILMVCVAK 36 (70)
Q Consensus 3 sdvthg~~e~--------S~~~-------W~~~~vGlVaTVvv~vyVTr 36 (70)
-|.+|+|+|+ +.|. -.+|++++++++++-+|.|.
T Consensus 160 vDFaH~w~e~wv~~~Edsr~wy~~Ll~~T~~~Y~~s~~~~~l~fv~ft~ 208 (426)
T KOG2592|consen 160 VDFAHSWNESWVEKVEDSRFWYAALLGVTLLMYLLSLVATVLLFVYFTP 208 (426)
T ss_pred HHHHhhHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHhheEecC
Confidence 4778999977 2222 35688899999999888886
No 40
>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.62 E-value=35 Score=25.53 Aligned_cols=21 Identities=10% Similarity=0.282 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 039998 16 RWVYMALGFVISVILMVCVAK 36 (70)
Q Consensus 16 ~W~~~~vGlVaTVvv~vyVTr 36 (70)
-|++.+.|.+.+++++.|+-|
T Consensus 190 Dk~iF~~G~i~~~v~~yl~~~ 210 (213)
T KOG3251|consen 190 DKIIFYGGVILTLVIMYLFYR 210 (213)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 466667899999999999865
No 41
>PRK05470 fumarate reductase subunit D; Provisional
Probab=41.17 E-value=19 Score=24.80 Aligned_cols=24 Identities=25% Similarity=0.715 Sum_probs=20.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHH
Q 039998 12 ISATRWVYMALGFVISVILMVCVA 35 (70)
Q Consensus 12 ~S~~~W~~~~vGlVaTVvv~vyVT 35 (70)
....+|++|++.++.||+..+.+-
T Consensus 93 ~~~~~~~~Yg~A~l~sv~~~~~v~ 116 (118)
T PRK05470 93 VPAGKWVFYGLAAILTVVALIGVL 116 (118)
T ss_pred cCcceeehhHHHHHHHHHHHHHHH
Confidence 447799999999999999888764
No 42
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=40.26 E-value=78 Score=21.41 Aligned_cols=41 Identities=22% Similarity=0.281 Sum_probs=25.4
Q ss_pred cCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 039998 7 HGWNEISATRWVYMALGFVISVILMVCVAKVAKASLDKSLIENG 50 (70)
Q Consensus 7 hg~~e~S~~~W~~~~vGlVaTVvv~vyVTrvAr~AL~~ai~E~~ 50 (70)
.||.-..+.=|-+ +-|+.-+.+.+|. |.+-+-+.+.+.+..
T Consensus 3 ~~~~~~~~~~w~~--i~f~il~~iL~~~-k~l~~pi~~~le~R~ 43 (167)
T PRK14475 3 SFFNLSNPEFWVG--AGLLIFFGILIAL-KVLPKALAGALDAYA 43 (167)
T ss_pred CCCCCCchHHHHH--HHHHHHHHHHHHH-HHhHHHHHHHHHHHH
Confidence 3566667777755 6666555555543 776676777776654
No 43
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=40.15 E-value=1e+02 Score=19.83 Aligned_cols=19 Identities=16% Similarity=0.310 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 039998 15 TRWVYMALGFVISVILMVC 33 (70)
Q Consensus 15 ~~W~~~~vGlVaTVvv~vy 33 (70)
++|+..++||++.+.....
T Consensus 2 ~~~~~~~l~~lvl~L~~~l 20 (110)
T PF10828_consen 2 KKYIYIALAVLVLGLGGWL 20 (110)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 5799999998854444433
No 44
>PF15061 DUF4538: Domain of unknown function (DUF4538)
Probab=38.81 E-value=28 Score=21.31 Aligned_cols=24 Identities=17% Similarity=0.099 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 039998 14 ATRWVYMALGFVISVILMVCVAKV 37 (70)
Q Consensus 14 ~~~W~~~~vGlVaTVvv~vyVTrv 37 (70)
.||-+.+..|||+.+.+.+|-.-+
T Consensus 4 g~r~~~~~ggfVg~iG~a~Ypi~~ 27 (58)
T PF15061_consen 4 GWRYALFVGGFVGLIGAALYPIYF 27 (58)
T ss_pred cccchhhHHHHHHHHHHHHhhhhc
Confidence 467788999999999999986543
No 45
>PRK10582 cytochrome o ubiquinol oxidase subunit IV; Provisional
Probab=37.83 E-value=33 Score=22.86 Aligned_cols=17 Identities=35% Similarity=0.516 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 039998 19 YMALGFVISVILMVCVA 35 (70)
Q Consensus 19 ~~~vGlVaTVvv~vyVT 35 (70)
-|.+||+.++++|+.-.
T Consensus 17 ~yviGFiLSliLT~i~F 33 (109)
T PRK10582 17 TYMTGFILSIILTVIPF 33 (109)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 57899999999986433
No 46
>PF10183 ESSS: ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) ; InterPro: IPR019329 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry represents the ESSS subunit from mitochondrial NADH:ubiquinone oxidoreductase (complex I). It carries mitochondrial import sequences [].
Probab=37.78 E-value=63 Score=20.88 Aligned_cols=43 Identities=7% Similarity=-0.123 Sum_probs=26.3
Q ss_pred ccCc-cccchHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHh
Q 039998 6 THGW-NEISATRWVYMALGFVISVILMVCV-----AKVAKASLDKSLIE 48 (70)
Q Consensus 6 thg~-~e~S~~~W~~~~vGlVaTVvv~vyV-----TrvAr~AL~~ai~E 48 (70)
.+|. .+.-.|+.+||+.-++..|++.+++ |++--=|.++|..+
T Consensus 49 ~~G~~~d~e~we~~~f~~~~~~~v~~~~~~~y~PD~~i~~WA~rEA~~r 97 (105)
T PF10183_consen 49 SPGEKRDWEGWELPFFFGFSGSLVFGGVFLAYKPDTSIQTWARREAYRR 97 (105)
T ss_pred cCCCcchHhhhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4552 3667788888876666666666655 34444566666554
No 47
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=37.40 E-value=81 Score=21.53 Aligned_cols=34 Identities=15% Similarity=0.284 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 039998 17 WVYMALGFVISVILMVCVAKVAKASLDKSLIENG 50 (70)
Q Consensus 17 W~~~~vGlVaTVvv~vyVTrvAr~AL~~ai~E~~ 50 (70)
|..++.-++.-+++++.+.|+..+=+.+.+.+..
T Consensus 18 ~~t~~~~iInFliL~~lL~~~l~~pi~~~l~~R~ 51 (173)
T PRK13453 18 WGTVIVTVLTFIVLLALLKKFAWGPLKDVMDKRE 51 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555556666667777888888777777777755
No 48
>TIGR02908 CoxD_Bacillus cytochrome c oxidase, subunit IVB. This model represents a small clade of cytochrome oxidase subunit IV's found in the Bacilli.
Probab=36.32 E-value=33 Score=23.22 Aligned_cols=16 Identities=13% Similarity=0.285 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 039998 19 YMALGFVISVILMVCV 34 (70)
Q Consensus 19 ~~~vGlVaTVvv~vyV 34 (70)
-|.+||+.++++|+.-
T Consensus 27 ~yviGFiLSiiLT~I~ 42 (110)
T TIGR02908 27 KQIVTFALMIFLTLIA 42 (110)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5889999999888643
No 49
>TIGR02901 QoxD cytochrome aa3 quinol oxidase, subunit IV. This family (QoxD) encodes subunit IV of the aa3-type quinone oxidase, one of several bacterial terminal oxidases. This complex couples oxidation of reduced quinones with the reduction of molecular oxygen to water and the pumping of protons to form a proton gradient utilized for ATP production. aa3-type oxidases contain two heme a cofactors as well as copper atoms in the active site.
Probab=35.93 E-value=35 Score=22.15 Aligned_cols=14 Identities=29% Similarity=0.574 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHH
Q 039998 20 MALGFVISVILMVC 33 (70)
Q Consensus 20 ~~vGlVaTVvv~vy 33 (70)
|.+||+.++++|+.
T Consensus 9 yviGFiLSiiLT~i 22 (94)
T TIGR02901 9 HVNGFILSLLLTFL 22 (94)
T ss_pred HHHHHHHHHHHHHH
Confidence 67899999998854
No 50
>PF11688 DUF3285: Protein of unknown function (DUF3285); InterPro: IPR021702 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=35.91 E-value=55 Score=19.26 Aligned_cols=26 Identities=12% Similarity=0.169 Sum_probs=22.1
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHH
Q 039998 11 EISATRWVYMALGFVISVILMVCVAK 36 (70)
Q Consensus 11 e~S~~~W~~~~vGlVaTVvv~vyVTr 36 (70)
..|-.+..+-.+||++-.+.+-|+||
T Consensus 20 ~~SL~HF~LT~~gll~~lv~la~l~r 45 (45)
T PF11688_consen 20 GTSLFHFGLTAVGLLGFLVGLAYLTR 45 (45)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHhcC
Confidence 45778888889999999999988876
No 51
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=35.60 E-value=89 Score=20.85 Aligned_cols=34 Identities=18% Similarity=0.195 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 039998 17 WVYMALGFVISVILMVCVAKVAKASLDKSLIENG 50 (70)
Q Consensus 17 W~~~~vGlVaTVvv~vyVTrvAr~AL~~ai~E~~ 50 (70)
|.-++.-+|.-+++++.+.|..-+=+.+.+.+..
T Consensus 8 ~~~~~~~~i~Flil~~ll~~~l~~pi~~~l~~R~ 41 (164)
T PRK14471 8 FGLFFWQTILFLILLLLLAKFAWKPILGAVKERE 41 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4445555666667777888888888888887755
No 52
>PF09604 Potass_KdpF: F subunit of K+-transporting ATPase (Potass_KdpF); InterPro: IPR011726 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the F subunit (KdpF) of a P-type K+-translocating ATPase (Kdp). KdpF is a very small integral membrane peptide. The kdpABC operon of Escherichia coli codes for the high affinity K+-translocating Kdp complex []. KdpF is found upstream of the KdpA subunit (IPR004623 from INTERPRO). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation. More information about this protein can be found at Protein of the Month: ATP Synthases [].
Probab=35.19 E-value=41 Score=17.31 Aligned_cols=15 Identities=33% Similarity=0.501 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHH
Q 039998 21 ALGFVISVILMVCVA 35 (70)
Q Consensus 21 ~vGlVaTVvv~vyVT 35 (70)
++|.+.++.+.+|+.
T Consensus 2 ~l~~~v~~~L~~YL~ 16 (25)
T PF09604_consen 2 ILGGIVAVALFVYLF 16 (25)
T ss_pred hHHHHHHHHHHHHHH
Confidence 577888888888875
No 53
>PF04066 MrpF_PhaF: Multiple resistance and pH regulation protein F (MrpF / PhaF); InterPro: IPR007208 Members of the PhaF/MrpF family are predicted to be integral membrane proteins with three transmembrane regions, involved in regulation of pH. PhaF is part of a potassium efflux system involved in pH regulation. It is also involved in symbiosis in Rhizobium meliloti (Sinorhizobium meliloti) []. MrpF is a part of a Na+/H+ antiporter complex, also involved in pH homeostasis. MrpF is thought to be an efflux system for Na+ and cholate []. The Mrp system in Gram-positive species may also have primary energisation capacities [].; GO: 0015075 ion transmembrane transporter activity, 0034220 ion transmembrane transport, 0016021 integral to membrane
Probab=35.06 E-value=44 Score=19.15 Aligned_cols=21 Identities=33% Similarity=0.502 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 039998 16 RWVYMALGFVISVILMVCVAK 36 (70)
Q Consensus 16 ~W~~~~vGlVaTVvv~vyVTr 36 (70)
-.++-.+||++|+.+.=|+.|
T Consensus 35 alv~all~Fvgtva~arfl~r 55 (55)
T PF04066_consen 35 ALVYALLGFVGTVAFARFLER 55 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHcC
Confidence 345667899999988766643
No 54
>PF04911 ATP-synt_J: ATP synthase j chain; InterPro: IPR006995 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit J found in the F0 complex of F-ATPases from fungal mitochondria. This subunit does not appear to display sequence similarity with subunits of F-ATPases found in other organisms []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o)
Probab=34.86 E-value=73 Score=19.28 Aligned_cols=26 Identities=23% Similarity=0.484 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039998 15 TRWVYMALGFVISVILMVCVAKVAKASLDK 44 (70)
Q Consensus 15 ~~W~~~~vGlVaTVvv~vyVTrvAr~AL~~ 44 (70)
-=|.|++.|.| +...|.+.+-.+.+.
T Consensus 9 P~wPFf~ag~i----v~ygv~k~~~a~~ns 34 (54)
T PF04911_consen 9 PMWPFFAAGAI----VYYGVNKAQNAMMNS 34 (54)
T ss_pred hhhHHHHHHHH----HHHHHHHHHHHHhcC
Confidence 34888766665 778888887776654
No 55
>KOG3269 consensus Predicted membrane protein [Function unknown]
Probab=34.50 E-value=36 Score=25.01 Aligned_cols=34 Identities=15% Similarity=0.335 Sum_probs=27.5
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039998 10 NEISATRWVYMALGFVISVILMVCVAKVAKASLD 43 (70)
Q Consensus 10 ~e~S~~~W~~~~vGlVaTVvv~vyVTrvAr~AL~ 43 (70)
++.|.+.|+.+++..+......-..-++||-+.+
T Consensus 47 s~~T~~~wi~lv~s~l~~g~~y~~m~~mAkpkyd 80 (180)
T KOG3269|consen 47 SSVTKTSWIGLVFSSLVYGFAYYFMHSMAKPKYD 80 (180)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHhccCCcC
Confidence 4778899999888888877777778888887765
No 56
>TIGR02206 intg_mem_TP0381 conserved hypothetical integral membrane protein TIGR02206. This model represents a family of hydrophobic proteins with seven predicted transmembrane alpha helices. Members are found in Bacillus subtilis (ywaF), TP0381 from Treponema pallidum (TP0381), Streptococcus pyogenes, Rhodococcus erythropolis, etc.
Probab=34.45 E-value=1.2e+02 Score=21.71 Aligned_cols=26 Identities=15% Similarity=0.354 Sum_probs=19.1
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHH
Q 039998 11 EISATRWVYMALGFVISVILMVCVAK 36 (70)
Q Consensus 11 e~S~~~W~~~~vGlVaTVvv~vyVTr 36 (70)
.+|+.+|+.+++.+++.+.+..+--|
T Consensus 5 ~fs~~H~~~l~~~~~~~~~l~~~~~~ 30 (222)
T TIGR02206 5 LFSHSHFIILLIAVVLAVLLVFLGFR 30 (222)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 47899999998888877765544443
No 57
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=34.45 E-value=73 Score=20.54 Aligned_cols=23 Identities=17% Similarity=0.556 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 039998 19 YMALGFVISVILMVCVAKVAKAS 41 (70)
Q Consensus 19 ~~~vGlVaTVvv~vyVTrvAr~A 41 (70)
|+.++++..++|+|.----||+.
T Consensus 6 ~llL~l~LA~lLlisSevaa~~~ 28 (95)
T PF07172_consen 6 FLLLGLLLAALLLISSEVAAREL 28 (95)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHh
Confidence 66677776666666555455544
No 58
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=34.31 E-value=1.1e+02 Score=18.50 Aligned_cols=28 Identities=32% Similarity=0.506 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039998 18 VYMALGFVISVILMVCVAKVAKASLDKS 45 (70)
Q Consensus 18 ~~~~vGlVaTVvv~vyVTrvAr~AL~~a 45 (70)
++..++|+.-++.++.+-+=.++.+++.
T Consensus 4 lI~Aiaf~vLvi~l~~~l~~l~~~l~~~ 31 (90)
T PF06103_consen 4 LIAAIAFAVLVIFLIKVLKKLKKTLDEV 31 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677776666666665555555543
No 59
>COG0332 FabH 3-oxoacyl-[acyl-carrier-protein]
Probab=33.45 E-value=22 Score=27.48 Aligned_cols=34 Identities=15% Similarity=0.184 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHhcCC-cceeccCCCCCCCCCC
Q 039998 34 VAKVAKASLDKSLIENGE-KCIMGQSMLPAGPESP 67 (70)
Q Consensus 34 VTrvAr~AL~~ai~E~~d-~~~~~~~~l~i~~~~~ 67 (70)
-++-||+||+++=...+| |.|+.++..|--.-|+
T Consensus 56 a~~Aa~~AL~~Agi~~~dIDlII~aT~tpd~~~Ps 90 (323)
T COG0332 56 AVEAARKALEDAGISPDDIDLIIVATSTPDHLFPS 90 (323)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEEEcCCcccCCCh
Confidence 356778888877777777 9998887766555554
No 60
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=33.21 E-value=57 Score=22.47 Aligned_cols=18 Identities=17% Similarity=0.237 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 039998 21 ALGFVISVILMVCVAKVAKA 40 (70)
Q Consensus 21 ~vGlVaTVvv~vyVTrvAr~ 40 (70)
+.|+|+++...+|+ ++|+
T Consensus 125 i~g~ll~i~~giy~--~~r~ 142 (145)
T PF10661_consen 125 IGGILLAICGGIYV--VLRK 142 (145)
T ss_pred HHHHHHHHHHHHHH--HHHH
Confidence 33444444444443 4444
No 61
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=32.96 E-value=20 Score=27.07 Aligned_cols=20 Identities=15% Similarity=0.378 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 039998 21 ALGFVISVILMVCVAKVAKA 40 (70)
Q Consensus 21 ~vGlVaTVvv~vyVTrvAr~ 40 (70)
+++=+++|+++|+++.++|.
T Consensus 43 iVAG~~tVILVI~i~v~vR~ 62 (221)
T PF08374_consen 43 IVAGIMTVILVIFIVVLVRY 62 (221)
T ss_pred eecchhhhHHHHHHHHHHHH
Confidence 45556789999999999983
No 62
>COG3117 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.92 E-value=55 Score=24.02 Aligned_cols=22 Identities=23% Similarity=0.386 Sum_probs=16.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHH
Q 039998 13 SATRWVYMALGFVISVILMVCV 34 (70)
Q Consensus 13 S~~~W~~~~vGlVaTVvv~vyV 34 (70)
..+||+++|+.|+|..++....
T Consensus 2 ~~~Rw~~~ILll~a~~~~~w~~ 23 (188)
T COG3117 2 MSRRWVYLILLLAALALSGWLL 23 (188)
T ss_pred cchhHHHHHHHHHHHHHHHHhh
Confidence 3689999888888777666553
No 63
>TIGR03717 R_switched_YjbE integral membrane protein, YjbE family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family commonly are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains protein YjbE from Bacillus subtilis. A transport function is proposed.
Probab=32.56 E-value=1e+02 Score=21.50 Aligned_cols=29 Identities=14% Similarity=0.331 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039998 16 RWVYMALGFVISVILMVCVAKVAKASLDK 44 (70)
Q Consensus 16 ~W~~~~vGlVaTVvv~vyVTrvAr~AL~~ 44 (70)
++.+++.|++.++.+|+|..+.=-+-+++
T Consensus 125 ~~~li~~g~~i~i~~m~~~s~~~~~~~~~ 153 (176)
T TIGR03717 125 HLGLLIFGLLLSIPIIVWGSTLILKLMDR 153 (176)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999988855554444
No 64
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=32.54 E-value=1.2e+02 Score=22.76 Aligned_cols=34 Identities=12% Similarity=0.440 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHh
Q 039998 15 TRWVYMALGFVISV-ILMVCVAKVAKASLDKSLIE 48 (70)
Q Consensus 15 ~~W~~~~vGlVaTV-vv~vyVTrvAr~AL~~ai~E 48 (70)
..|.++++|+...+ +.|+.++|-|++|-=+.++-
T Consensus 51 ~~~~~~i~gi~~g~l~am~vl~rra~ra~Y~qieG 85 (224)
T PF13829_consen 51 SWWYWLIIGILLGLLAAMIVLSRRAQRAAYAQIEG 85 (224)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34666667765544 45777888888887666654
No 65
>PF11694 DUF3290: Protein of unknown function (DUF3290); InterPro: IPR021707 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=32.32 E-value=80 Score=21.89 Aligned_cols=34 Identities=18% Similarity=0.316 Sum_probs=25.6
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039998 10 NEISATRWVYMALGFVISVILMVCVAKVAKASLD 43 (70)
Q Consensus 10 ~e~S~~~W~~~~vGlVaTVvv~vyVTrvAr~AL~ 43 (70)
++.+...|..|++.+++.+++++...+--|.=++
T Consensus 10 ~q~~~~~~~~~~~i~~ll~~l~~~~~~Y~r~r~~ 43 (149)
T PF11694_consen 10 SQQSQNDYLRYILIIILLLVLIFFFIKYLRNRLD 43 (149)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 3567788999999998888888887776665443
No 66
>TIGR02058 lin0512_fam conserved hypothetical protein. This family consists of few members, broadly distributed. It occurs so far in several Firmicutes (twice in Oceanobacillus), one Cyanobacterium, one alpha Proteobacterium, and (with a long prefix) in plants. The function is unknown. The alignment includes a perfectly conserved motif GxGxDxHG near the N-terminus.
Probab=32.23 E-value=43 Score=22.86 Aligned_cols=17 Identities=18% Similarity=0.360 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHhcC
Q 039998 34 VAKVAKASLDKSLIENG 50 (70)
Q Consensus 34 VTrvAr~AL~~ai~E~~ 50 (70)
.||=|+||.++||..|.
T Consensus 18 ~TkAA~RAvrDAI~hns 34 (116)
T TIGR02058 18 ITKAAMRAVRNAIASNS 34 (116)
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 58999999999998765
No 67
>PF13974 YebO: YebO-like protein
Probab=32.10 E-value=65 Score=20.77 Aligned_cols=23 Identities=13% Similarity=0.252 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 039998 19 YMALGFVISVILMVCVAKVAKAS 41 (70)
Q Consensus 19 ~~~vGlVaTVvv~vyVTrvAr~A 41 (70)
+..++++...++-+||+|-.-||
T Consensus 3 ~~~~~~lv~livWFFVnRaSvRA 25 (80)
T PF13974_consen 3 VSVLVLLVGLIVWFFVNRASVRA 25 (80)
T ss_pred ehHHHHHHHHHHHHHHHHHHHhH
Confidence 44566667777999999998776
No 68
>TIGR02847 CyoD cytochrome o ubiquinol oxidase subunit IV. Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain which reacts with oxygen, reducing it to water with the concomitant transport of 4 protons across the membrane. Also known as the cytochrome bo complex, cytochrome o ubiquinol oxidase contains four subunits, two heme b cofactors and a copper atom which is believed to be the oxygen active site. This complex is structurally related to the cytochrome caa3 oxidases which utilize cytochrome c as the reductant and contain heme a cofactors, as well as the intermediate form aa3 oxidases which also react directly with quinones as the reductant.
Probab=31.85 E-value=44 Score=21.74 Aligned_cols=15 Identities=47% Similarity=0.696 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHH
Q 039998 19 YMALGFVISVILMVC 33 (70)
Q Consensus 19 ~~~vGlVaTVvv~vy 33 (70)
-|.+||+.++++|+.
T Consensus 6 ~yviGFiLsliLT~i 20 (96)
T TIGR02847 6 SYLIGFVLSVILTAI 20 (96)
T ss_pred HHHHHHHHHHHHHHH
Confidence 478999999998853
No 69
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=31.59 E-value=46 Score=27.71 Aligned_cols=21 Identities=19% Similarity=0.434 Sum_probs=14.7
Q ss_pred cchHHHHHHHHHHHHHHHHHH
Q 039998 12 ISATRWVYMALGFVISVILMV 32 (70)
Q Consensus 12 ~S~~~W~~~~vGlVaTVvv~v 32 (70)
.+.|||.||+.+....+.++.
T Consensus 192 ~~~WRw~~~~~~i~~~i~~vl 212 (599)
T PF06609_consen 192 HSGWRWIFYIFIIWSGIALVL 212 (599)
T ss_pred CCCcchHHHHHHHHHHHHHHH
Confidence 468999999887765554433
No 70
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=31.56 E-value=22 Score=28.56 Aligned_cols=26 Identities=23% Similarity=0.571 Sum_probs=19.6
Q ss_pred cCccccchHHHHHHHHHHHHHHHHHH
Q 039998 7 HGWNEISATRWVYMALGFVISVILMV 32 (70)
Q Consensus 7 hg~~e~S~~~W~~~~vGlVaTVvv~v 32 (70)
+|......|||.|++-|++..+.-++
T Consensus 197 ~~~~~~~gW~~~FiI~G~i~~~~gi~ 222 (495)
T KOG2533|consen 197 NGSGGLAGWRWLFIIEGVITLVLGIV 222 (495)
T ss_pred cCCCCcCCceeehhHHHHHHHHHHhe
Confidence 34457889999999999776665544
No 71
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=31.53 E-value=1.1e+02 Score=20.71 Aligned_cols=31 Identities=19% Similarity=0.238 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 039998 20 MALGFVISVILMVCVAKVAKASLDKSLIENG 50 (70)
Q Consensus 20 ~~vGlVaTVvv~vyVTrvAr~AL~~ai~E~~ 50 (70)
++.-++.-+++++.+.|+..+-+.+.+.+..
T Consensus 19 ~~~~~i~Flil~~iL~~~~~kpi~~~l~~R~ 49 (173)
T PRK13460 19 VVWTLVTFLVVVLVLKKFAWDVILKALDERA 49 (173)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3345666667777788888888888887765
No 72
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=31.35 E-value=55 Score=23.55 Aligned_cols=23 Identities=22% Similarity=0.492 Sum_probs=11.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 039998 14 ATRWVYMALGFVISVILMVCVAKV 37 (70)
Q Consensus 14 ~~~W~~~~vGlVaTVvv~vyVTrv 37 (70)
-|.|.+++ ..+.+.++||++-||
T Consensus 228 ~~~~~~i~-~v~~~Fi~mvl~iri 250 (251)
T PF09753_consen 228 CWTWLMIF-VVIIVFIMMVLFIRI 250 (251)
T ss_pred HHHHHHHH-HHHHHHHHHHHHhee
Confidence 45555433 344455566666554
No 73
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=31.35 E-value=79 Score=18.91 Aligned_cols=25 Identities=28% Similarity=0.514 Sum_probs=19.6
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHH
Q 039998 10 NEISATRWVYMALGFVISVILMVCV 34 (70)
Q Consensus 10 ~e~S~~~W~~~~vGlVaTVvv~vyV 34 (70)
.-.+|-++.++.+|++...++.+.+
T Consensus 52 ~P~~P~~~lil~l~~~~Gl~lgi~~ 76 (82)
T PF13807_consen 52 KPVSPKRALILALGLFLGLILGIGL 76 (82)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 3567889999999998888776654
No 74
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=31.26 E-value=95 Score=20.23 Aligned_cols=30 Identities=20% Similarity=0.186 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 039998 22 LGFVISVILMVCVAKVAKASLDKSLIENGE 51 (70)
Q Consensus 22 vGlVaTVvv~vyVTrvAr~AL~~ai~E~~d 51 (70)
..++.-+++++.+.|+..+-+.+.+.+..+
T Consensus 9 ~~~i~Flil~~il~~~~~~pi~~~l~~R~~ 38 (156)
T PRK05759 9 GQLIAFLILVWFIMKFVWPPIMKALEERQK 38 (156)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 344555567777888888888888877553
No 75
>PF01036 Bac_rhodopsin: Bacteriorhodopsin-like protein; InterPro: IPR001425 The bacterial opsins are retinal-binding proteins that provide light- dependent ion transport and sensory functions to a family of halophilic bacteria [, ]. They are integral membrane proteins believed to contain seven transmembrane (TM) domains, the last of which contains the attachment point for retinal (a conserved lysine). There are several classes of these bacterial proteins: they include bacteriorhodopsin and archaerhodopsin, which are light-driven proton pumps; halorhodopsin, a light-driven chloride pump; and sensory rhodopsin, which mediates both photoattractant (in the red) and photophobic (in the UV) responses.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 3QBI_B 3QBK_D 3QBL_D 3QBG_B 3AM6_D 1UAZ_B 1E12_A 2JAF_A 2JAG_A 3UG9_A ....
Probab=31.26 E-value=58 Score=22.83 Aligned_cols=33 Identities=3% Similarity=0.117 Sum_probs=23.4
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039998 11 EISATRWVYMALGFVISVILMVCVAKVAKASLD 43 (70)
Q Consensus 11 e~S~~~W~~~~vGlVaTVvv~vyVTrvAr~AL~ 43 (70)
..+..+|+++.+|.++-+.+.-.+-+-.|++.+
T Consensus 119 ~~~~~kw~~~~~~~~~~~~i~y~l~~~~~~~a~ 151 (222)
T PF01036_consen 119 VPGTYKWGWFLVSCAAFLYIVYLLFGPLRRAAS 151 (222)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHT
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356779999999998877666555555555543
No 76
>PHA02650 hypothetical protein; Provisional
Probab=30.78 E-value=72 Score=20.81 Aligned_cols=16 Identities=19% Similarity=0.173 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 039998 28 VILMVCVAKVAKASLD 43 (70)
Q Consensus 28 Vvv~vyVTrvAr~AL~ 43 (70)
+++++..-|+.|+-|+
T Consensus 63 ~l~~flYLK~~~r~~~ 78 (81)
T PHA02650 63 ALFSFFVFKGYTRNLN 78 (81)
T ss_pred HHHHHHHHHHhccccC
Confidence 3344555677777654
No 77
>PF11188 DUF2975: Protein of unknown function (DUF2975); InterPro: IPR021354 This family of proteins have no known function. Some members are annotated as membrane proteins however this cannot be confirmed.
Probab=30.68 E-value=1.4e+02 Score=18.49 Aligned_cols=40 Identities=15% Similarity=0.365 Sum_probs=25.7
Q ss_pred cCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039998 7 HGWNEISATRWVYMALGFVISVILMVCVAKVAKASLDKSLI 47 (70)
Q Consensus 7 hg~~e~S~~~W~~~~vGlVaTVvv~vyVTrvAr~AL~~ai~ 47 (70)
+.-.+.+...|.+...++ ...+..++....+|+.++....
T Consensus 13 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~ll~~i~~ 52 (136)
T PF11188_consen 13 SEYPEASGAYWPFLLIGL-LVLLLILIALYQLRRLLRNIQK 52 (136)
T ss_pred hhCccccchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHC
Confidence 334577788888887744 4445566666666777776543
No 78
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=30.38 E-value=1.1e+02 Score=21.92 Aligned_cols=35 Identities=9% Similarity=0.179 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 039998 17 WVYMALGFVISVILMVCVAKVAKASLDKSLIENGE 51 (70)
Q Consensus 17 W~~~~vGlVaTVvv~vyVTrvAr~AL~~ai~E~~d 51 (70)
|.-++.-++..+++++.+.|++.+-+.+.+.+..+
T Consensus 5 ~~t~~~qiInFlil~~lL~kfl~kPi~~~l~~R~~ 39 (246)
T TIGR03321 5 WFTVIAQLINFLILVWLLKRFLYRPILDAMDAREK 39 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 44444556677788888899999988888888653
No 79
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=30.34 E-value=1.3e+02 Score=20.53 Aligned_cols=33 Identities=9% Similarity=-0.041 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 039998 17 WVYMALGFVISVILMVCVAKVAKASLDKSLIENG 50 (70)
Q Consensus 17 W~~~~vGlVaTVvv~vyVTrvAr~AL~~ai~E~~ 50 (70)
|-|++- ++..+++++.+.+++.+-+.+.+.+..
T Consensus 23 ~~~~~~-~inflil~~lL~~fl~kPi~~~l~~R~ 55 (167)
T PRK08475 23 YDIIER-TINFLIFVGILWYFAAKPLKNFYKSRI 55 (167)
T ss_pred hhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444 677778888888999888888888765
No 80
>PF11210 DUF2996: Protein of unknown function (DUF2996); InterPro: IPR021374 This family of proteins has no known function.
Probab=30.22 E-value=58 Score=22.46 Aligned_cols=29 Identities=17% Similarity=0.210 Sum_probs=21.6
Q ss_pred HHHHHHHHhcC--C-cceeccCCCCCCCCCCC
Q 039998 40 ASLDKSLIENG--E-KCIMGQSMLPAGPESPL 68 (70)
Q Consensus 40 ~AL~~ai~E~~--d-~~~~~~~~l~i~~~~~~ 68 (70)
=||.++++++| | +--..--..||+.++|-
T Consensus 17 PaL~~~l~~~Gi~d~~L~f~~~~~pi~g~~CW 48 (119)
T PF11210_consen 17 PALKKALEKEGISDVELSFEKNKRPIVGGPCW 48 (119)
T ss_pred HHHHHHHHHcCCCcceEEeccCCccccCCcce
Confidence 37889999987 3 44445577899998884
No 81
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=30.19 E-value=1.2e+02 Score=21.57 Aligned_cols=35 Identities=11% Similarity=0.031 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 039998 17 WVYMALGFVISVILMVCVAKVAKASLDKSLIENGE 51 (70)
Q Consensus 17 W~~~~vGlVaTVvv~vyVTrvAr~AL~~ai~E~~d 51 (70)
|..++.-++..+++++.+.|+..+-+.+.+.++.+
T Consensus 48 ~~~~i~qlInFlIlv~lL~k~l~kPi~~~L~~R~~ 82 (205)
T PRK06231 48 FWVFIAHLIAFSILLLLGIFLFWKPTQRFLNKRKE 82 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455566777788888889998888888887653
No 82
>COG3332 Uncharacterized conserved protein [Function unknown]
Probab=29.55 E-value=14 Score=28.52 Aligned_cols=17 Identities=47% Similarity=0.446 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHhcCC
Q 039998 35 AKVAKASLDKSLIENGE 51 (70)
Q Consensus 35 TrvAr~AL~~ai~E~~d 51 (70)
.|.||.||++.++|+++
T Consensus 161 v~~araal~~~l~e~~~ 177 (270)
T COG3332 161 VKKARAALAELLAENIE 177 (270)
T ss_pred HHHHHHHHHHHHhcccc
Confidence 47899999999999953
No 83
>COG3116 FtsL Cell division protein [Cell division and chromosome partitioning]
Probab=28.83 E-value=1.5e+02 Score=20.06 Aligned_cols=33 Identities=18% Similarity=0.380 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhcC
Q 039998 18 VYMALGFVISVILMVCVAKVAKA---SLDKSLIENG 50 (70)
Q Consensus 18 ~~~~vGlVaTVvv~vyVTrvAr~---AL~~ai~E~~ 50 (70)
.++.+|.+.|.+.+||.|--.|. .+..++.|..
T Consensus 25 l~LLi~ivlsAi~vv~~tH~tRqL~~e~~~~~~er~ 60 (105)
T COG3116 25 LLLLIAIVLSAIGVVYTTHHTRQLIAELEQLVLERD 60 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 35567777777777766655554 4555555543
No 84
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=28.76 E-value=45 Score=24.94 Aligned_cols=29 Identities=17% Similarity=0.338 Sum_probs=23.8
Q ss_pred cCccccchHHHHHHHHHHHHHHHHHHHHH
Q 039998 7 HGWNEISATRWVYMALGFVISVILMVCVA 35 (70)
Q Consensus 7 hg~~e~S~~~W~~~~vGlVaTVvv~vyVT 35 (70)
|+|...+.++++.+..|++..+.=.++++
T Consensus 263 ~e~~~~~~~~~~~~~~G~~~ii~GV~lL~ 291 (300)
T PF05653_consen 263 QEFSRMTAWQIIGFLCGFLIIIIGVFLLS 291 (300)
T ss_pred cccccccHHHHHHHHHHHHHHHHhhheee
Confidence 56888999999999999998876666554
No 85
>PF09585 Lin0512_fam: Conserved hypothetical protein (Lin0512_fam); InterPro: IPR011719 This family consists of few members, broadly distributed. It occurs so far in several Firmicutes (twice in Oceanobacillus), one Cyanobacterium, one alpha Proteobacterium, and (with a long prefix) in plants. The function is unknown. The alignment includes a perfectly conserved motif GxGxDxHG near the N terminus.
Probab=28.65 E-value=55 Score=22.22 Aligned_cols=17 Identities=18% Similarity=0.251 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHhcC
Q 039998 34 VAKVAKASLDKSLIENG 50 (70)
Q Consensus 34 VTrvAr~AL~~ai~E~~ 50 (70)
.||=|+||.++||..|.
T Consensus 18 ~TkAA~RAv~DAI~~ns 34 (113)
T PF09585_consen 18 YTKAAVRAVRDAISHNS 34 (113)
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 58999999999998865
No 86
>PRK14788 lipoprotein signal peptidase; Provisional
Probab=28.60 E-value=97 Score=22.45 Aligned_cols=24 Identities=8% Similarity=-0.053 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 039998 15 TRWVYMALGFVISVILMVCVAKVA 38 (70)
Q Consensus 15 ~~W~~~~vGlVaTVvv~vyVTrvA 38 (70)
.+|.+.++.+++.+++..|+.|..
T Consensus 59 ~~~~f~vitii~i~~i~~~l~~~~ 82 (200)
T PRK14788 59 GKLFLTLFRIVAVGGIGYYLWKLV 82 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 578888888888888888887653
No 87
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=28.49 E-value=1e+02 Score=19.09 Aligned_cols=28 Identities=21% Similarity=0.212 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 039998 24 FVISVILMVCVAKVAKASLDKSLIENGE 51 (70)
Q Consensus 24 lVaTVvv~vyVTrvAr~AL~~ai~E~~d 51 (70)
++.-+++++.+.+...+-+.+.+.+..+
T Consensus 6 ~i~Flil~~~l~~~~~~pi~~~l~~R~~ 33 (132)
T PF00430_consen 6 LINFLILFFLLNKFLYKPIKKFLDERKA 33 (132)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHCS--S-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555577888888889999888888664
No 88
>PHA02819 hypothetical protein; Provisional
Probab=28.22 E-value=1.4e+02 Score=18.99 Aligned_cols=18 Identities=22% Similarity=0.462 Sum_probs=8.3
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 039998 14 ATRWVYMALGFVISVILM 31 (70)
Q Consensus 14 ~~~W~~~~vGlVaTVvv~ 31 (70)
.+.|.+.++.+++-+.+.
T Consensus 43 ~~~~~~~ii~l~~~~~~~ 60 (71)
T PHA02819 43 SFLRYYLIIGLVTIVFVI 60 (71)
T ss_pred ChhHHHHHHHHHHHHHHH
Confidence 444554455555444333
No 89
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=27.47 E-value=57 Score=22.71 Aligned_cols=22 Identities=14% Similarity=0.463 Sum_probs=18.1
Q ss_pred ccCccccchHHHHHHHHHHHHHHH
Q 039998 6 THGWNEISATRWVYMALGFVISVI 29 (70)
Q Consensus 6 thg~~e~S~~~W~~~~vGlVaTVv 29 (70)
+.||++.+..|=.+ ++++||.|
T Consensus 55 ~qgwssay~Ve~vi--~qiaatlV 76 (122)
T KOG0897|consen 55 KQGWSSAYEVERVI--MQIAATLV 76 (122)
T ss_pred cccccchhhHHHHH--HHHHHHhh
Confidence 56899999999887 77888776
No 90
>PF10389 CoatB: Bacteriophage coat protein B ; InterPro: IPR008020 The major coat protein in the capsid of filamentous bacteriophage forms a helical assembly of about 7000 identical protomers, with each protomer comprised of 46 amino acids, after the cleavage of the signal peptide. Each protomer forms a slightly curved helix that combines to form a tubular structure that encapsulates the viral DNA [].; PDB: 2IFO_A.
Probab=27.06 E-value=1.1e+02 Score=17.82 Aligned_cols=22 Identities=27% Similarity=0.283 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 039998 20 MALGFVISVILMVCVAKVAKAS 41 (70)
Q Consensus 20 ~~vGlVaTVvv~vyVTrvAr~A 41 (70)
-+.|.+..|++.+.+-|--||+
T Consensus 24 ~ig~avL~v~V~i~v~kwiRra 45 (46)
T PF10389_consen 24 TIGGAVLGVIVGIAVYKWIRRA 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 4567888889999999999886
No 91
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=26.98 E-value=1.4e+02 Score=21.85 Aligned_cols=35 Identities=9% Similarity=0.214 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 039998 17 WVYMALGFVISVILMVCVAKVAKASLDKSLIENGE 51 (70)
Q Consensus 17 W~~~~vGlVaTVvv~vyVTrvAr~AL~~ai~E~~d 51 (70)
|.-++.=++.-+++++.+.|+..+-+.+.+.+.++
T Consensus 5 ~~t~~~qiInFlILv~lL~~fl~kPi~~~l~eR~~ 39 (250)
T PRK14474 5 WFTVVAQIINFLILVYLLRRFLYKPIIQVMKKRQQ 39 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566667777889999999999988888888663
No 92
>PF09911 DUF2140: Uncharacterized protein conserved in bacteria (DUF2140); InterPro: IPR018672 This family of conserved hypothetical proteins has no known function.
Probab=26.92 E-value=78 Score=22.34 Aligned_cols=17 Identities=12% Similarity=0.438 Sum_probs=10.2
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 039998 14 ATRWVYMALGFVISVILMV 32 (70)
Q Consensus 14 ~~~W~~~~vGlVaTVvv~v 32 (70)
.|.|+|.+ |+|-+++.+
T Consensus 2 ~WK~aF~~--Lla~~l~~~ 18 (187)
T PF09911_consen 2 WWKWAFLI--LLALNLAFV 18 (187)
T ss_pred hHHHHHHH--HHHHHHHHH
Confidence 68999966 444443333
No 93
>PF11714 Inhibitor_I53: Thrombin inhibitor Madanin ; InterPro: IPR021716 Members of this family are the peptidase inhibitor madanin proteins. These proteins were isolated from tick saliva [].
Probab=26.82 E-value=70 Score=20.68 Aligned_cols=20 Identities=20% Similarity=0.370 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 039998 16 RWVYMALGFVISVILMVCVA 35 (70)
Q Consensus 16 ~W~~~~vGlVaTVvv~vyVT 35 (70)
+.+++++-.|+|.+||-|=-
T Consensus 3 hFaiLilavVaSAvVMAyPe 22 (78)
T PF11714_consen 3 HFAILILAVVASAVVMAYPE 22 (78)
T ss_pred hHHHHHHHHHHHHHHHhccc
Confidence 46788999999999999854
No 94
>PHA02337 putative high light inducible protein
Probab=26.56 E-value=58 Score=18.13 Aligned_cols=17 Identities=35% Similarity=0.393 Sum_probs=12.3
Q ss_pred ccchHHHHHHHHHHHHHHH
Q 039998 11 EISATRWVYMALGFVISVI 29 (70)
Q Consensus 11 e~S~~~W~~~~vGlVaTVv 29 (70)
|+=..|+++ +||++.++
T Consensus 6 E~~NGRlAM--iGfv~~~~ 22 (35)
T PHA02337 6 EIFNGWLAM--IGFVAAVG 22 (35)
T ss_pred HHHhhHHHH--HHHHHHHH
Confidence 555678888 88887554
No 95
>PRK00376 lspA lipoprotein signal peptidase; Reviewed
Probab=26.32 E-value=1.3e+02 Score=20.69 Aligned_cols=26 Identities=23% Similarity=0.483 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039998 14 ATRWVYMALGFVISVILMVCVAKVAK 39 (70)
Q Consensus 14 ~~~W~~~~vGlVaTVvv~vyVTrvAr 39 (70)
..+|.+.++.+++.+++..|..|..+
T Consensus 66 ~~~~~~~~i~~~~~~~~~~~~~~~~~ 91 (160)
T PRK00376 66 WQRWFFTGIAIGISVVLVYLLYRSKA 91 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 46889988998888888888776543
No 96
>PF13061 DUF3923: Protein of unknown function (DUF3923)
Probab=25.99 E-value=1.4e+02 Score=18.22 Aligned_cols=29 Identities=17% Similarity=0.365 Sum_probs=20.9
Q ss_pred ccCccccchHHHH-HHHHHHHHHHHHHHHH
Q 039998 6 THGWNEISATRWV-YMALGFVISVILMVCV 34 (70)
Q Consensus 6 thg~~e~S~~~W~-~~~vGlVaTVvv~vyV 34 (70)
+||-.|..+.||+ +...+.....++++.+
T Consensus 29 gaGv~qT~~~k~itl~vl~i~~~~i~i~q~ 58 (66)
T PF13061_consen 29 GAGVVQTPELKLITLAVLGIFFIIILIIQL 58 (66)
T ss_pred ccccccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677788899998 7777777666666543
No 97
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=25.85 E-value=1.3e+02 Score=18.02 Aligned_cols=18 Identities=22% Similarity=0.416 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 039998 16 RWVYMALGFVISVILMVC 33 (70)
Q Consensus 16 ~W~~~~vGlVaTVvv~vy 33 (70)
+|.++++++++.+++.++
T Consensus 67 k~~~i~~~iv~~~~~~i~ 84 (89)
T PF00957_consen 67 KLYIIIIIIVIIIILIII 84 (89)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHhhhhhhhhHHH
Confidence 444555555544444443
No 98
>PF14159 CAAD: CAAD domains of cyanobacterial aminoacyl-tRNA synthetase
Probab=25.77 E-value=1.3e+02 Score=19.06 Aligned_cols=33 Identities=15% Similarity=0.311 Sum_probs=22.7
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039998 11 EISATRWVYMALGFVISVILMVCVAKVAKASLD 43 (70)
Q Consensus 11 e~S~~~W~~~~vGlVaTVvv~vyVTrvAr~AL~ 43 (70)
-.+.-+-+++.+|.+..+++.+.++---=+|+|
T Consensus 11 ~~~~~~~~~~~~~~ii~~iv~l~v~~~vl~aIn 43 (90)
T PF14159_consen 11 FFDKYKRPLLTIGAIIAVIVALWVSAAVLDAIN 43 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667788888887777777777655555554
No 99
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=25.68 E-value=1.6e+02 Score=19.92 Aligned_cols=28 Identities=21% Similarity=0.188 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 039998 24 FVISVILMVCVAKVAKASLDKSLIENGE 51 (70)
Q Consensus 24 lVaTVvv~vyVTrvAr~AL~~ai~E~~d 51 (70)
++.-+++++.+.++..+-+.+.+.+..+
T Consensus 26 iinflIl~~lL~~fl~kpI~~~l~~R~~ 53 (174)
T PRK07352 26 LINLAIVIGLLYYFGRGFLGKILEERRE 53 (174)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4455566666777788888888877653
No 100
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=25.42 E-value=2.1e+02 Score=19.78 Aligned_cols=29 Identities=14% Similarity=0.268 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039998 15 TRWVYMALGFVISVILMVCVAKVAKASLD 43 (70)
Q Consensus 15 ~~W~~~~vGlVaTVvv~vyVTrvAr~AL~ 43 (70)
--|.+.++-++.|+++++..-.+.+.-.+
T Consensus 90 ~~~~Il~~ivvSTllvl~vtg~v~~~l~r 118 (141)
T PRK04125 90 YPVQIIGVIIVATILLLACTGLFSQFILG 118 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34777777788888877777676665333
No 101
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=25.12 E-value=62 Score=17.75 Aligned_cols=27 Identities=15% Similarity=0.447 Sum_probs=17.4
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHH
Q 039998 9 WNEISATRWVYMALGFVISVILMVCVA 35 (70)
Q Consensus 9 ~~e~S~~~W~~~~vGlVaTVvv~vyVT 35 (70)
|+++.+-+.++.++.+++.++++.++.
T Consensus 9 ~~~f~~nk~a~~gl~il~~~vl~ai~~ 35 (56)
T PF12911_consen 9 WRRFRRNKLAVIGLIILLILVLLAIFA 35 (56)
T ss_pred HHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence 556666677777777766666665543
No 102
>PRK03427 cell division protein ZipA; Provisional
Probab=25.08 E-value=76 Score=25.11 Aligned_cols=19 Identities=21% Similarity=0.462 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 039998 14 ATRWVYMALGFVISVILMV 32 (70)
Q Consensus 14 ~~~W~~~~vGlVaTVvv~v 32 (70)
-.|.|++++|.+|-+.|.+
T Consensus 4 dLrLiLivvGAIAIiAlL~ 22 (333)
T PRK03427 4 DLRLILIIVGAIAIIALLV 22 (333)
T ss_pred hhhhHHHHHHHHHHHHHHH
Confidence 3689999999999888876
No 103
>COG4768 Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain [General function prediction only]
Probab=25.04 E-value=2.2e+02 Score=20.21 Aligned_cols=31 Identities=16% Similarity=0.185 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHh
Q 039998 17 WVYMALGFVISVILMV---CVAKVAKASLDKSLIE 48 (70)
Q Consensus 17 W~~~~vGlVaTVvv~v---yVTrvAr~AL~~ai~E 48 (70)
|++|+.+.++.+.+.| |+-+. .+.+.+.+.|
T Consensus 2 ~ilyIs~~iiAiAf~vL~I~li~t-lkkv~~tlde 35 (139)
T COG4768 2 IILYISLAIIAIAFLVLVIYLIIT-LKKVSKTLDE 35 (139)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 6777777766655444 44443 2345555554
No 104
>PRK01658 holin-like protein; Validated
Probab=25.04 E-value=2.2e+02 Score=19.02 Aligned_cols=30 Identities=3% Similarity=0.112 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039998 14 ATRWVYMALGFVISVILMVCVAKVAKASLD 43 (70)
Q Consensus 14 ~~~W~~~~vGlVaTVvv~vyVTrvAr~AL~ 43 (70)
.--|.+.++-.+.|+++++....+++.-.+
T Consensus 86 ~~~~~il~~ivvsT~l~l~vtg~~~~~l~~ 115 (122)
T PRK01658 86 SKGISLFLVVVISTFVVMIVTGYLTQLLAK 115 (122)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344777778888888888888877776444
No 105
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=24.73 E-value=1.3e+02 Score=19.16 Aligned_cols=20 Identities=10% Similarity=0.570 Sum_probs=10.6
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 039998 14 ATRWVYMALGFVISVILMVC 33 (70)
Q Consensus 14 ~~~W~~~~vGlVaTVvv~vy 33 (70)
.+.|.++++++++-+.+.++
T Consensus 45 ~~~~~~~ii~ii~v~ii~~l 64 (72)
T PF12575_consen 45 NFNWIILIISIIFVLIIVLL 64 (72)
T ss_pred cchHHHHHHHHHHHHHHHHH
Confidence 35555556666555444443
No 106
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=24.52 E-value=1.5e+02 Score=20.27 Aligned_cols=34 Identities=9% Similarity=0.090 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 039998 18 VYMALGFVISVILMVCVAKVAKASLDKSLIENGE 51 (70)
Q Consensus 18 ~~~~vGlVaTVvv~vyVTrvAr~AL~~ai~E~~d 51 (70)
-++...++..+++++.+.|.+.+-+.+.+.++.+
T Consensus 25 ~~~~~~~Inflill~lL~~fl~kPI~~~l~~R~~ 58 (184)
T CHL00019 25 DILETNLINLSVVLGVLIYFGKGVLSDLLDNRKQ 58 (184)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 4555567888888888899999999988888653
No 107
>KOG2551 consensus Phospholipase/carboxyhydrolase [Amino acid transport and metabolism]
Probab=24.16 E-value=56 Score=24.74 Aligned_cols=20 Identities=30% Similarity=0.449 Sum_probs=16.8
Q ss_pred HHHHHHHHhcCC-cceeccCC
Q 039998 40 ASLDKSLIENGE-KCIMGQSM 59 (70)
Q Consensus 40 ~AL~~ai~E~~d-~~~~~~~~ 59 (70)
+.|++++.|||. |+|++=+|
T Consensus 93 ~yl~~~i~enGPFDGllGFSQ 113 (230)
T KOG2551|consen 93 EYLEDYIKENGPFDGLLGFSQ 113 (230)
T ss_pred HHHHHHHHHhCCCccccccch
Confidence 578899999999 99987554
No 108
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=24.11 E-value=1.8e+02 Score=20.81 Aligned_cols=23 Identities=4% Similarity=0.112 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Q 039998 28 VILMVCVAKVAKASLDKSLIENG 50 (70)
Q Consensus 28 Vvv~vyVTrvAr~AL~~ai~E~~ 50 (70)
+++++++.|++-+=+.+.+.++.
T Consensus 64 liL~~lL~k~~~~pI~~vLe~R~ 86 (204)
T PRK09174 64 GLFYLFMSRVILPRIGGIIETRR 86 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667887777777777755
No 109
>PRK10712 PTS system fructose-specific transporter subunits IIBC; Provisional
Probab=24.09 E-value=1.1e+02 Score=25.40 Aligned_cols=33 Identities=3% Similarity=-0.008 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 039998 17 WVYMALGFVISVILMVCVAKVAKASLDKSLIEN 49 (70)
Q Consensus 17 W~~~~vGlVaTVvv~vyVTrvAr~AL~~ai~E~ 49 (70)
+.+|+++++++.+++..+-.+-|+-..++++|.
T Consensus 530 ~~~~iiai~ig~vvt~~~~~~~k~~~~~~~~~~ 562 (563)
T PRK10712 530 VLGYLVAIIAGTLVAGLAYAFLKRPETDAVAKA 562 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccchhhhhccC
Confidence 778889999999999999899888777777653
No 110
>PF09775 Keratin_assoc: Keratinocyte-associated protein 2; InterPro: IPR018614 Members of this family comprise various keratinocyte-associated proteins. The function of these proteins is not known.
Probab=24.03 E-value=1.1e+02 Score=21.33 Aligned_cols=27 Identities=15% Similarity=0.322 Sum_probs=22.8
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHH
Q 039998 11 EISATRWVYMALGFVISVILMVCVAKV 37 (70)
Q Consensus 11 e~S~~~W~~~~vGlVaTVvv~vyVTrv 37 (70)
.....||.-+..||+.+.+.++.+|-+
T Consensus 29 ~l~sS~~~ti~GGflgS~lF~~~LTav 55 (131)
T PF09775_consen 29 WLASSQLLTILGGFLGSLLFIFLLTAV 55 (131)
T ss_pred HhccchHHHHHHHHHHHHHHHHHHHHh
Confidence 445678888999999999999999955
No 111
>COG4059 MtrE Tetrahydromethanopterin S-methyltransferase, subunit E [Coenzyme metabolism]
Probab=24.02 E-value=54 Score=25.63 Aligned_cols=37 Identities=19% Similarity=0.311 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 039998 14 ATRWVYMALGFVISVILMVCVAKVAKASLDKSLIENG 50 (70)
Q Consensus 14 ~~~W~~~~vGlVaTVvv~vyVTrvAr~AL~~ai~E~~ 50 (70)
.+.|+-+..|++.-.++++.=.|+-++|=+++=.-.+
T Consensus 260 ~~G~isiv~Gliiv~iLii~N~kvEv~ARn~YGpY~e 296 (304)
T COG4059 260 QGGWISIVAGLIIVLILIIWNRKVEVKARNAYGPYKE 296 (304)
T ss_pred ccchhhhHHHHHHHHHHHHhcchhhhhhhhccCCccc
Confidence 4559999999998888888877798888777654444
No 112
>TIGR01708 typeII_sec_gspH general secretion pathway protein H. This model represents GspH, protein H of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=23.87 E-value=2.1e+02 Score=18.35 Aligned_cols=25 Identities=16% Similarity=0.262 Sum_probs=14.5
Q ss_pred ccchHHH--HHHHHHHHHHHHHHHHHH
Q 039998 11 EISATRW--VYMALGFVISVILMVCVA 35 (70)
Q Consensus 11 e~S~~~W--~~~~vGlVaTVvv~vyVT 35 (70)
.|+-.+- ++-++|+++++++.-+-.
T Consensus 5 GFTLiEllvvlaIiail~~~~~~~~~~ 31 (143)
T TIGR01708 5 GFTLIELLVVLAIMGLVAAAAALSLVS 31 (143)
T ss_pred cEEHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3444443 456677777777665543
No 113
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=23.84 E-value=1.8e+02 Score=17.66 Aligned_cols=17 Identities=29% Similarity=0.556 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 039998 23 GFVISVILMVCVAKVAK 39 (70)
Q Consensus 23 GlVaTVvv~vyVTrvAr 39 (70)
||...+++++.+.=++-
T Consensus 11 ~f~~~~~l~~~~~~~~~ 27 (181)
T PF12729_consen 11 GFGLIILLLLIVGIVGL 27 (181)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333334443333333
No 114
>TIGR02115 potass_kdpF K+-transporting ATPase, KdpF subunit. This model describes a very small integral membrane peptide KdpF, a subunit of the K(+)-translocating Kdp complex. It is found upstream of the KdpA subunit (TIGR00680). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation.
Probab=23.77 E-value=74 Score=16.60 Aligned_cols=15 Identities=20% Similarity=0.301 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHH
Q 039998 21 ALGFVISVILMVCVA 35 (70)
Q Consensus 21 ~vGlVaTVvv~vyVT 35 (70)
++|.+.++.+.+|+.
T Consensus 1 ii~~~l~~~L~~YL~ 15 (26)
T TIGR02115 1 IILLVLAVGLFIYLF 15 (26)
T ss_pred CHHHHHHHHHHHHHH
Confidence 357777888888764
No 115
>COG3694 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=23.75 E-value=2e+02 Score=22.31 Aligned_cols=34 Identities=15% Similarity=0.232 Sum_probs=28.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039998 13 SATRWVYMALGFVISVILMVCVAKVAKASLDKSLIE 48 (70)
Q Consensus 13 S~~~W~~~~vGlVaTVvv~vyVTrvAr~AL~~ai~E 48 (70)
-.-.|+++ ++++++++...-.+.=|++|+.+...
T Consensus 225 ~~~~~~i~--~~~~a~~~f~ls~~fW~~glr~Y~SA 258 (260)
T COG3694 225 LDPEWAIG--SLLAALLLFTLSLKFWKKGLRRYTSA 258 (260)
T ss_pred CChHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 44567775 99999999999999999999998653
No 116
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=23.47 E-value=1.1e+02 Score=22.50 Aligned_cols=21 Identities=5% Similarity=0.188 Sum_probs=15.6
Q ss_pred chHHHHHHHHHHHHHHHHHHH
Q 039998 13 SATRWVYMALGFVISVILMVC 33 (70)
Q Consensus 13 S~~~W~~~~vGlVaTVvv~vy 33 (70)
..|||+|++.|.++.+...++
T Consensus 141 ~gWr~~f~~~~~l~~~~~~~~ 161 (368)
T TIGR00903 141 GGLQLLIIPIAAVAAAGIILV 161 (368)
T ss_pred cchHHHHHHHHHHHHHHHHHH
Confidence 469999999898876654443
No 117
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=23.30 E-value=2e+02 Score=19.48 Aligned_cols=27 Identities=26% Similarity=0.277 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 039998 24 FVISVILMVCVAKVAKASLDKSLIENG 50 (70)
Q Consensus 24 lVaTVvv~vyVTrvAr~AL~~ai~E~~ 50 (70)
++.-+++++.+.|+.-+-+.+.+.+..
T Consensus 25 ~i~Flil~~lL~~~l~kpi~~~l~~R~ 51 (175)
T PRK14472 25 AVTFVIVLLILKKIAWGPILSALEERE 51 (175)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 344446666677888777777777754
No 118
>PF07664 FeoB_C: Ferrous iron transport protein B C terminus; InterPro: IPR011640 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions []. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus has been previously erroneously described as being ATP-binding []. Recent work shows that it is similar to eukaryotic G-proteins and that it is a GTPase [].; GO: 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane
Probab=23.23 E-value=1.5e+02 Score=16.70 Aligned_cols=19 Identities=21% Similarity=0.457 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 039998 17 WVYMALGFVISVILMVCVAKVAK 39 (70)
Q Consensus 17 W~~~~vGlVaTVvv~vyVTrvAr 39 (70)
..+|.+|++..+ .+.++.|
T Consensus 3 ~~~y~~~~~~~l----~~~~il~ 21 (54)
T PF07664_consen 3 FSLYLLGILVAL----LVGLILK 21 (54)
T ss_pred HHHHHHHHHHHH----HHHHHHH
Confidence 356777777444 4444444
No 119
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=23.14 E-value=90 Score=24.04 Aligned_cols=51 Identities=14% Similarity=0.128 Sum_probs=34.8
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-cceeccCCCCC
Q 039998 11 EISATRWVYMALGFVISVILMVCVAKVAKASLDKSLIENGE-KCIMGQSMLPA 62 (70)
Q Consensus 11 e~S~~~W~~~~vGlVaTVvv~vyVTrvAr~AL~~ai~E~~d-~~~~~~~~l~i 62 (70)
-.+|-+..++++|+++.+++.+.+.=+ +..|+..+...+| +..++.|-|..
T Consensus 408 P~~P~~~~~l~~g~~~Gl~lg~~~~~l-~e~ld~~i~~~~~ie~~lglpvLg~ 459 (498)
T TIGR03007 408 PSGPNRPLLMLAGLLGGLGAGIGLAFL-LSQLRPTVRSVRDLRELTGLPVLGV 459 (498)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHH-HHHhcCcCCCHHHHHHHcCCCeEEe
Confidence 445778888999999988887665543 5667777766666 55555554433
No 120
>PLN03168 chalcone synthase; Provisional
Probab=23.10 E-value=1.5e+02 Score=22.90 Aligned_cols=36 Identities=22% Similarity=0.191 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHhcC----C-cceeccCCCCCCCCCCCC
Q 039998 33 CVAKVAKASLDKSLIENG----E-KCIMGQSMLPAGPESPLD 69 (70)
Q Consensus 33 yVTrvAr~AL~~ai~E~~----d-~~~~~~~~l~i~~~~~~d 69 (70)
....+|.+|.++++++-| | |.++.++..|.. -|++|
T Consensus 100 ~a~~La~~Aa~~AL~~ag~~~~dId~lI~~T~Tg~~-~Ps~a 140 (389)
T PLN03168 100 QVPKLAAEAAQKAIKEWGGRKSDITHIVFATTSGVN-MPGAD 140 (389)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCC-CccHH
Confidence 455677777777777754 3 888888877855 56654
No 121
>PRK12880 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=23.09 E-value=44 Score=25.15 Aligned_cols=35 Identities=11% Similarity=0.044 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHhcC----C-cceeccCCCCCCCCCCC
Q 039998 34 VAKVAKASLDKSLIENG----E-KCIMGQSMLPAGPESPL 68 (70)
Q Consensus 34 VTrvAr~AL~~ai~E~~----d-~~~~~~~~l~i~~~~~~ 68 (70)
...+|-+|.+++++..+ | |.++.++..|--..|+.
T Consensus 60 ~~~la~~Aa~~aL~~a~~~~~dId~lI~~t~t~d~~~P~~ 99 (353)
T PRK12880 60 VSDLGKHAANTLLQGLNIDKNSLDALIVVTQSPDFFMPST 99 (353)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCCEEEEEcCCCCCCCCcH
Confidence 34556666666666543 4 88888888876556653
No 122
>PF15058 Speriolin_N: Speriolin N terminus
Probab=22.99 E-value=2e+02 Score=21.52 Aligned_cols=39 Identities=13% Similarity=0.072 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcC--C-cceeccCCCCCCCCCCC
Q 039998 30 LMVCVAKVAKASLDKSLIENG--E-KCIMGQSMLPAGPESPL 68 (70)
Q Consensus 30 v~vyVTrvAr~AL~~ai~E~~--d-~~~~~~~~l~i~~~~~~ 68 (70)
=.++=+...|+||-++-+++. + +++.-.|--..++||++
T Consensus 29 rLirEN~eLksaL~ea~~~~~~r~~~~vf~pp~pA~a~Ep~~ 70 (200)
T PF15058_consen 29 RLIRENHELKSALGEACAEPSQRQGNDVFLPPSPAYANEPCL 70 (200)
T ss_pred HHHHHHHHHHHHHHHhhcccccccCCceecCCCCCCCCCCCC
Confidence 456778999999999999965 3 66766666555568875
No 123
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=22.94 E-value=52 Score=25.65 Aligned_cols=24 Identities=25% Similarity=0.462 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 039998 14 ATRWVYMALGFVISVILMVCVAKV 37 (70)
Q Consensus 14 ~~~W~~~~vGlVaTVvv~vyVTrv 37 (70)
.-+|..||+-|++-+++++.|-++
T Consensus 248 kkki~c~gI~~iii~viv~vv~~v 271 (280)
T COG5074 248 KKKIRCYGICFIIIIVIVVVVFKV 271 (280)
T ss_pred hcceehhhhHHHHHHHHHHHHhcc
Confidence 457999999999998888888654
No 124
>COG3462 Predicted membrane protein [Function unknown]
Probab=22.92 E-value=1.2e+02 Score=21.00 Aligned_cols=19 Identities=5% Similarity=0.464 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 039998 17 WVYMALGFVISVILMVCVA 35 (70)
Q Consensus 17 W~~~~vGlVaTVvv~vyVT 35 (70)
.+++.+|++|-|+++.+++
T Consensus 8 ~~w~ligliavi~~v~li~ 26 (117)
T COG3462 8 FAWLLIGLIAVIAVVGLIP 26 (117)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3444588888887776654
No 125
>COG4413 Utp Urea transporter [Amino acid transport and metabolism]
Probab=22.88 E-value=96 Score=24.62 Aligned_cols=29 Identities=24% Similarity=0.466 Sum_probs=25.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039998 12 ISATRWVYMALGFVISVILMVCVAKVAKA 40 (70)
Q Consensus 12 ~S~~~W~~~~vGlVaTVvv~vyVTrvAr~ 40 (70)
.|+.-|.+..+|-..|++|+-+|-++-|.
T Consensus 90 ~sp~l~~i~vlg~lvSv~v~aav~~ilr~ 118 (319)
T COG4413 90 WSPGLWSIVVLGCLVSVAVQAAVLHILRT 118 (319)
T ss_pred CCcceehHHHHHHHHHHHHHHHHHHHhhh
Confidence 46788999999999999999999888775
No 126
>PF13664 DUF4149: Domain of unknown function (DUF4149)
Probab=22.23 E-value=1.9e+02 Score=17.37 Aligned_cols=36 Identities=6% Similarity=0.091 Sum_probs=26.2
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039998 9 WNEISATRWVYMALGFVISVILMVCVAKVAKASLDK 44 (70)
Q Consensus 9 ~~e~S~~~W~~~~vGlVaTVvv~vyVTrvAr~AL~~ 44 (70)
......+++.+..+.++.+++-.+|++.-+.++-++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~l~~~~~l~P~~~~l~~~ 98 (101)
T PF13664_consen 63 SGNANRWQLLLLLVMLLLTLLNAFYLGPKMNALKDQ 98 (101)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345557777888888888888888888777666544
No 127
>PRK10772 cell division protein FtsL; Provisional
Probab=22.07 E-value=2.5e+02 Score=18.70 Aligned_cols=27 Identities=11% Similarity=0.203 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039998 20 MALGFVISVILMVCVAKVAKASLDKSL 46 (70)
Q Consensus 20 ~~vGlVaTVvv~vyVTrvAr~AL~~ai 46 (70)
+.+..++|.+.+||.+--+|+-..+.-
T Consensus 29 Ll~~vv~SAl~VV~~~h~tR~l~~ele 55 (108)
T PRK10772 29 LFIAVIVSAVTVVTTAHHTRLLTAERE 55 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566788888888988888887655443
No 128
>COG3932 Uncharacterized ABC-type transport system, permease components [General function prediction only]
Probab=21.96 E-value=1.4e+02 Score=22.52 Aligned_cols=25 Identities=32% Similarity=0.437 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 039998 18 VYMALGFVISVILMVCVAKVAKASL 42 (70)
Q Consensus 18 ~~~~vGlVaTVvv~vyVTrvAr~AL 42 (70)
.+...|++.+|+..+|.++++-.+-
T Consensus 173 ll~~lGy~~~v~~avl~~~l~y~~~ 197 (209)
T COG3932 173 LLVLLGYVFSVAIAVLFAVLLYALF 197 (209)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567899999999999999986553
No 129
>PF12409 P5-ATPase: P5-type ATPase cation transporter
Probab=21.76 E-value=1.7e+02 Score=18.76 Aligned_cols=29 Identities=14% Similarity=0.048 Sum_probs=24.3
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039998 11 EISATRWVYMALGFVISVILMVCVAKVAK 39 (70)
Q Consensus 11 e~S~~~W~~~~vGlVaTVvv~vyVTrvAr 39 (70)
..+.+|-+++.++.+.|..+..++.|=-.
T Consensus 11 r~~~~r~~l~~~l~ilT~Gll~L~~~W~p 39 (119)
T PF12409_consen 11 RTSKWRTILYYFLCILTLGLLYLVFRWFP 39 (119)
T ss_pred ecchHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 57889999999999999998888876443
No 130
>PRK14759 potassium-transporting ATPase subunit F; Provisional
Probab=21.67 E-value=1.5e+02 Score=15.95 Aligned_cols=16 Identities=19% Similarity=0.308 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 039998 20 MALGFVISVILMVCVA 35 (70)
Q Consensus 20 ~~vGlVaTVvv~vyVT 35 (70)
|++|-+.++.+.+|+.
T Consensus 5 ~~l~~~va~~L~vYL~ 20 (29)
T PRK14759 5 YSLAGAVSLGLLIYLT 20 (29)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5677778888888865
No 131
>KOG1277 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.66 E-value=1.3e+02 Score=25.65 Aligned_cols=29 Identities=17% Similarity=0.281 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039998 17 WVYMALGFVISVILMVCVAKVAKASLDKS 45 (70)
Q Consensus 17 W~~~~vGlVaTVvv~vyVTrvAr~AL~~a 45 (70)
-++..+|||+++.+=++=+--||-|.++-
T Consensus 235 mVifLvGlvamILMRtLrnDyarY~~dee 263 (593)
T KOG1277|consen 235 MVIFLVGLVAMILMRTLRNDYARYAKDEE 263 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence 35667888887776666666666655544
No 132
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=21.32 E-value=2.4e+02 Score=20.75 Aligned_cols=22 Identities=14% Similarity=0.366 Sum_probs=16.7
Q ss_pred ccchHHHHHHHHHHHHHHHHHH
Q 039998 11 EISATRWVYMALGFVISVILMV 32 (70)
Q Consensus 11 e~S~~~W~~~~vGlVaTVvv~v 32 (70)
+|..++..++.+|+|..+++++
T Consensus 25 sffsthm~tILiaIvVliiiii 46 (189)
T PF05568_consen 25 SFFSTHMYTILIAIVVLIIIII 46 (189)
T ss_pred cHHHHHHHHHHHHHHHHHHHHH
Confidence 6777888888899887765544
No 133
>COG4856 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.52 E-value=56 Score=26.70 Aligned_cols=24 Identities=17% Similarity=0.558 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 039998 14 ATRWVYMALGFVISVILMVCVAKV 37 (70)
Q Consensus 14 ~~~W~~~~vGlVaTVvv~vyVTrv 37 (70)
..+|.++++.|+...++.+|++--
T Consensus 6 ns~W~irIiaff~A~~Lfl~vn~~ 29 (403)
T COG4856 6 NSPWLIRIIAFFFAILLFLYVNNN 29 (403)
T ss_pred cCcHhHHHHHHHHHHHhheeeccc
Confidence 348999999999999999998754
No 134
>PF09801 SYS1: Integral membrane protein S linking to the trans Golgi network; InterPro: IPR019185 Members of this family are integral membrane proteins involved in protein trafficking between the late Golgi and endosome. They may also serve as a receptor for ADP-ribosylation factor-related protein 1 (ARFRP1) []. Sys1p is a small integral membrane protein with four predicted transmembrane domains that localises to the Trans Golgi network TGN in yeast and human cells [].
Probab=20.43 E-value=1.8e+02 Score=19.86 Aligned_cols=31 Identities=19% Similarity=0.351 Sum_probs=24.3
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039998 11 EISATRWVYMALGFVISVILMVCVAKVAKASLD 43 (70)
Q Consensus 11 e~S~~~W~~~~vGlVaTVvv~vyVTrvAr~AL~ 43 (70)
..+-.=|+.+++|.+.++++.-|..+ ||=|+
T Consensus 110 P~~~~WW~~~~~~~~im~~lge~lC~--~rEl~ 140 (144)
T PF09801_consen 110 PTSFSWWLLQILSSAIMIVLGEYLCR--RRELR 140 (144)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHH--HHHhc
Confidence 45566799999999999999988887 55443
No 135
>TIGR02758 TraA_TIGR type IV conjugative transfer system pilin TraA. TraA is the single structural subunit of the pilus found in type IV conjugative transfer systems. This family is generally found in gammaproteobacteria. The pilins show considerable heterogeneity among the different conjugative plasmit types. All of them however contain an N-terminal part which is cleaved off by a leader peptidase (LepB, or similar) to result in a 68-78 amino acid product. Pilins may be further processed by acetylation (in F-like systems by the TraX protein) or by cyclization (in P-like systems by the TraF protein).
Probab=20.03 E-value=1.6e+02 Score=19.52 Aligned_cols=20 Identities=10% Similarity=0.346 Sum_probs=17.1
Q ss_pred ccchHHHHHHHHHHHHHHHH
Q 039998 11 EISATRWVYMALGFVISVIL 30 (70)
Q Consensus 11 e~S~~~W~~~~vGlVaTVvv 30 (70)
..|+.+|.+|+.|+++.++.
T Consensus 44 ~gStv~~~i~~aev~~~~~~ 63 (93)
T TIGR02758 44 KDSSVEMAMILAGLLVAAVM 63 (93)
T ss_pred CCcHHHHHHHHHHHHHHHHH
Confidence 67899999999999987654
Done!