Query 039998
Match_columns 70
No_of_seqs 35 out of 37
Neff 3.5
Searched_HMMs 13730
Date Mon Mar 25 06:02:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039998.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/039998hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1kf6d_ f.21.2.2 (D:) Fumarate 73.3 1.8 0.00013 27.3 3.6 24 11-34 93-116 (119)
2 d2vv5a3 f.34.1.1 (A:27-112) Me 52.7 9.7 0.0007 20.6 3.8 31 20-50 4-34 (86)
3 d1mzja1 c.95.1.2 (A:3-183) Pri 48.0 5.8 0.00042 24.4 2.5 34 34-67 62-96 (181)
4 d2pila_ d.24.1.1 (A:) Pilin Gc 45.2 20 0.0015 19.4 5.2 26 18-43 9-34 (158)
5 d1hnja1 c.95.1.2 (A:1-174) Ket 39.7 9.6 0.0007 23.1 2.6 32 36-67 57-89 (174)
6 d1u6ea1 c.95.1.2 (A:-10-174) K 37.7 13 0.00092 22.6 2.9 32 36-67 67-99 (184)
7 d2nr9a1 f.51.1.1 (A:4-192) Glp 36.5 19 0.0014 21.7 3.6 25 19-43 165-189 (189)
8 d2axtm1 f.23.35.1 (M:1-36) Pho 31.7 9.1 0.00066 19.5 1.2 12 21-32 5-16 (36)
9 d1u0ma1 c.95.1.2 (A:2-201) Put 30.3 19 0.0014 22.2 2.8 29 34-62 79-108 (200)
10 d1ub7a1 c.95.1.2 (A:2-173) Ket 28.6 11 0.00079 22.8 1.4 32 36-67 55-87 (172)
11 d1bi5a1 c.95.1.2 (A:1-235) Cha 25.6 12 0.00088 23.9 1.2 30 34-63 102-136 (235)
No 1
>d1kf6d_ f.21.2.2 (D:) Fumarate reductase subunit FrdD {Escherichia coli [TaxId: 562]}
Probab=73.27 E-value=1.8 Score=27.31 Aligned_cols=24 Identities=25% Similarity=0.736 Sum_probs=20.6
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHH
Q 039998 11 EISATRWVYMALGFVISVILMVCV 34 (70)
Q Consensus 11 e~S~~~W~~~~vGlVaTVvv~vyV 34 (70)
+....+|+||++.++.||+.++.|
T Consensus 93 h~p~g~~~fYg~A~l~sv~~~~~v 116 (119)
T d1kf6d_ 93 HVPAGKWVFYGLAAILTVVTLIGV 116 (119)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHHHHH
Confidence 345689999999999999998876
No 2
>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]}
Probab=52.75 E-value=9.7 Score=20.62 Aligned_cols=31 Identities=10% Similarity=0.249 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 039998 20 MALGFVISVILMVCVAKVAKASLDKSLIENG 50 (70)
Q Consensus 20 ~~vGlVaTVvv~vyVTrvAr~AL~~ai~E~~ 50 (70)
-++..+...++..++.|..++.+++..+.++
T Consensus 4 ~il~~l~il~i~~~i~~~i~~~~~~~~~~~~ 34 (86)
T d2vv5a3 4 NIVAALAIIIVGLIIARMISNAVNRLMISRK 34 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3455555666777888888888887776644
No 3
>d1mzja1 c.95.1.2 (A:3-183) Priming beta-ketosynthase from the r1128 polyketide biosynthetic pathway {Streptomyces sp. r1128 [TaxId: 140437]}
Probab=48.01 E-value=5.8 Score=24.36 Aligned_cols=34 Identities=12% Similarity=0.190 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHhcCC-cceeccCCCCCCCCCC
Q 039998 34 VAKVAKASLDKSLIENGE-KCIMGQSMLPAGPESP 67 (70)
Q Consensus 34 VTrvAr~AL~~ai~E~~d-~~~~~~~~l~i~~~~~ 67 (70)
-.+-||+||+++--+.+| |.++..++.|-...|+
T Consensus 62 a~~Aa~~aL~~a~~~~~dId~li~~s~~~~~~~p~ 96 (181)
T d1mzja1 62 GVAASRRALEHAGVDPAEIDLVVVSTMTNFVHTPP 96 (181)
T ss_dssp HHHHHHHHHHHHTCCGGGCCEEEEECSCCCCCSSC
T ss_pred hHHHHHhhhhhccCChhHCeEEEEeccCCcccccc
Confidence 345566666666555556 8888888887665554
No 4
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=45.19 E-value=20 Score=19.38 Aligned_cols=26 Identities=23% Similarity=0.291 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039998 18 VYMALGFVISVILMVCVAKVAKASLD 43 (70)
Q Consensus 18 ~~~~vGlVaTVvv~vyVTrvAr~AL~ 43 (70)
++.|+|.++++++=-|..-+.|.-..
T Consensus 9 ViaIIgILaaia~P~~~~~~~~a~~~ 34 (158)
T d2pila_ 9 VIAIVGILAAVALPAYQDYTARAQVS 34 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999988887766654333
No 5
>d1hnja1 c.95.1.2 (A:1-174) Ketoacyl-ACP synthase III (FabH) {Escherichia coli [TaxId: 562]}
Probab=39.74 E-value=9.6 Score=23.07 Aligned_cols=32 Identities=13% Similarity=0.109 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHhcCC-cceeccCCCCCCCCCC
Q 039998 36 KVAKASLDKSLIENGE-KCIMGQSMLPAGPESP 67 (70)
Q Consensus 36 rvAr~AL~~ai~E~~d-~~~~~~~~l~i~~~~~ 67 (70)
+-||+||+++-.+.+| |.++..++.|--..|+
T Consensus 57 ~Aa~~al~~a~~~~~~Id~li~~s~~~~~~~P~ 89 (174)
T d1hnja1 57 EAATRAIEMAGIEKDQIGLIVVATTSATHAFPS 89 (174)
T ss_dssp HHHHHHHHHHTCCGGGCCEEEEECSCCSCSSSC
T ss_pred HHHHHhhhhcccccccccEEEEecCCccccccc
Confidence 4445555554444445 8888887777665554
No 6
>d1u6ea1 c.95.1.2 (A:-10-174) Ketoacyl-ACP synthase III (FabH) {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=37.68 E-value=13 Score=22.59 Aligned_cols=32 Identities=6% Similarity=0.123 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHhcCC-cceeccCCCCCCCCCC
Q 039998 36 KVAKASLDKSLIENGE-KCIMGQSMLPAGPESP 67 (70)
Q Consensus 36 rvAr~AL~~ai~E~~d-~~~~~~~~l~i~~~~~ 67 (70)
+-||++|+++--+..| |-++..+..|-...|+
T Consensus 67 ~Aa~~al~~ag~~~~dIdllI~~t~t~~~~~p~ 99 (184)
T d1u6ea1 67 EACRRALSNAGLSAADIDGVIVTTNTHFLQTPP 99 (184)
T ss_dssp HHHHHHHHHHTCCGGGCCEEEEECSCCCCSSSC
T ss_pred HHHHHHHHhcccCcccceEEEEeeccCcccccc
Confidence 4445555544444555 8888888877655543
No 7
>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]}
Probab=36.55 E-value=19 Score=21.70 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 039998 19 YMALGFVISVILMVCVAKVAKASLD 43 (70)
Q Consensus 19 ~~~vGlVaTVvv~vyVTrvAr~AL~ 43 (70)
==..|+++.+.......|.-||.|+
T Consensus 165 aHl~G~l~G~~~g~~~~~~~k~~~~ 189 (189)
T d2nr9a1 165 AHISGLIVGLIWGFIDSKLRKNSLE 189 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcccccccC
Confidence 3458999999999999999999875
No 8
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=31.72 E-value=9.1 Score=19.50 Aligned_cols=12 Identities=17% Similarity=0.681 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHH
Q 039998 21 ALGFVISVILMV 32 (70)
Q Consensus 21 ~vGlVaTVvv~v 32 (70)
.+||+||..+++
T Consensus 5 ~Lg~iAt~LFil 16 (36)
T d2axtm1 5 QLGLIATALFVL 16 (36)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 468888876543
No 9
>d1u0ma1 c.95.1.2 (A:2-201) Putative polyketide synthase SCO1206 {Streptomyces coelicolor [TaxId: 1902]}
Probab=30.32 E-value=19 Score=22.21 Aligned_cols=29 Identities=21% Similarity=0.166 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHhcCC-cceeccCCCCC
Q 039998 34 VAKVAKASLDKSLIENGE-KCIMGQSMLPA 62 (70)
Q Consensus 34 VTrvAr~AL~~ai~E~~d-~~~~~~~~l~i 62 (70)
-.+-||+||+++=.+.+| |.++..+..|.
T Consensus 79 a~~Aa~~aL~~ag~~~~dId~lI~~s~t~~ 108 (200)
T d1u0ma1 79 VPAVIQRALDDAELLATDIDVIIYVSCTGF 108 (200)
T ss_dssp HHHHHHHHHHHHTCCGGGCSEEEEECSSSC
T ss_pred HHHHHHHHHHHcCCChhhhheEEEeccCCC
Confidence 445555555555444555 88877666554
No 10
>d1ub7a1 c.95.1.2 (A:2-173) Ketoacyl-ACP synthase III (FabH) {Thermus thermophilus [TaxId: 274]}
Probab=28.63 E-value=11 Score=22.83 Aligned_cols=32 Identities=9% Similarity=-0.004 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHhcCC-cceeccCCCCCCCCCC
Q 039998 36 KVAKASLDKSLIENGE-KCIMGQSMLPAGPESP 67 (70)
Q Consensus 36 rvAr~AL~~ai~E~~d-~~~~~~~~l~i~~~~~ 67 (70)
+-||+||+++--+.+| |-++..++.|-...|+
T Consensus 55 ~Aa~~aL~~agi~~~dIdlli~~s~t~~~~~p~ 87 (172)
T d1ub7a1 55 KAVEDLLRRHPGALEGVDAVIVATNTPDALFPD 87 (172)
T ss_dssp HHHHHHHHHSTTTTTTEEEEEEECSSCSEEESC
T ss_pred HHHHHHHhhcCcccccceEEEEecccccccccc
Confidence 3455555555555556 8888887777544443
No 11
>d1bi5a1 c.95.1.2 (A:1-235) Chalcone synthase {Alfalfa (Medicago sativa) [TaxId: 3879]}
Probab=25.62 E-value=12 Score=23.94 Aligned_cols=30 Identities=13% Similarity=0.176 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHh----cCC-cceeccCCCCCC
Q 039998 34 VAKVAKASLDKSLIE----NGE-KCIMGQSMLPAG 63 (70)
Q Consensus 34 VTrvAr~AL~~ai~E----~~d-~~~~~~~~l~i~ 63 (70)
...+|-+|.++++++ .+| |.++.++..|.-
T Consensus 102 ~~~la~~Aa~~aL~~a~~~~~dId~lI~~t~t~~~ 136 (235)
T d1bi5a1 102 VPRLGKEAAVKAIKEWGQPKSKITHLIVCTTSGVD 136 (235)
T ss_dssp HHHHHHHHHHHHHHHHCSCGGGCCEEEEEESSCCC
T ss_pred HHHHHHHHHHHHHHHcCCChhHCcEEEEecccCCc
Confidence 344555555555555 335 888877776654
Done!