BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040006
(129 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4D|B Chain B, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4F|A Chain A, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
pdb|3G4F|B Chain B, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
Length = 554
Score = 119 bits (299), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 56/129 (43%), Positives = 82/129 (63%)
Query: 1 WDIGHIDALPEYMKFIFKTLIGVYSEAEEELSKERRSYSIQYAIRSFQELVMKYFCEAKW 60
WDI ID +PEYMK +K L+ VY E + +++ R Y ++YA + L Y EAKW
Sbjct: 329 WDIKCIDEIPEYMKPSYKALLDVYEEMVQLVAEHGRQYRVEYAKNAMIRLAQSYLVEAKW 388
Query: 61 LNEGYVPSMDEYKSVSLRSIGFLPIAVASFIFMGDIASREIFEWEMSNPKIIIAAETIFR 120
+ Y PS +E+K+ +L + G+ +A+ SF+ MGDI + E F+W S+PKII A+ I R
Sbjct: 389 TLQNYKPSFEEFKANALPTCGYAMLAITSFVGMGDIVTPETFKWAASDPKIIQASTIICR 448
Query: 121 FLDDIAGHK 129
F+DD+A HK
Sbjct: 449 FMDDVAEHK 457
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W
Length = 548
Score = 90.9 bits (224), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 78/129 (60%), Gaps = 1/129 (0%)
Query: 1 WDIGHIDALPEYMKFIFKTLIGVYSEAEEELSKERRSYSIQYAIRSFQELVMKYFCEAKW 60
WDI ID LP+YMK +K ++ +Y + E+ELS RS+ + +AI +E+V Y E+ W
Sbjct: 323 WDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNVESTW 382
Query: 61 LNEGYVPSMDEYKSVSLRSIGFLPIAVASFIFMGDIASREIFEWEMSNPKIIIAAETIFR 120
EGY P + EY S +L + + +A S++ M A+ + FEW NPKI+ A+ I+R
Sbjct: 383 FIEGYTPPVSEYLSNALATTTYYYLATTSYLGMKS-ATEQDFEWLSKNPKILEASVIIWR 441
Query: 121 FLDDIAGHK 129
+DD A ++
Sbjct: 442 VIDDTATYE 450
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w
Length = 548
Score = 90.9 bits (224), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 78/129 (60%), Gaps = 1/129 (0%)
Query: 1 WDIGHIDALPEYMKFIFKTLIGVYSEAEEELSKERRSYSIQYAIRSFQELVMKYFCEAKW 60
WDI ID LP+YMK +K ++ +Y + E+ELS RS+ + +AI +E+V Y E+ W
Sbjct: 323 WDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNVESTW 382
Query: 61 LNEGYVPSMDEYKSVSLRSIGFLPIAVASFIFMGDIASREIFEWEMSNPKIIIAAETIFR 120
EGY P + EY S +L + + +A S++ M A+ + FEW NPKI+ A+ I+R
Sbjct: 383 FIEGYTPPVSEYLSNALATTTYYYLATTSYLGMKS-ATEQDFEWLSKNPKILEASVIIWR 441
Query: 121 FLDDIAGHK 129
+DD A ++
Sbjct: 442 VIDDTATYE 450
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphospha
pdb|3M00|A Chain A, Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mutant Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 90.5 bits (223), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 77/129 (59%), Gaps = 1/129 (0%)
Query: 1 WDIGHIDALPEYMKFIFKTLIGVYSEAEEELSKERRSYSIQYAIRSFQELVMKYFCEAKW 60
WDI ID LP+YMK +K ++ +Y + E+ELS RS+ + +AI +E+V Y E+ W
Sbjct: 325 WDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEIVRNYNVESTW 384
Query: 61 LNEGYVPSMDEYKSVSLRSIGFLPIAVASFIFMGDIASREIFEWEMSNPKIIIAAETIFR 120
EGY P + EY S +L + + +A S++ M A+ + FEW NPKI+ A+ I R
Sbjct: 385 FIEGYTPPVSEYLSNALATTTYYLLATTSYLGMKS-ATEQDFEWLSKNPKILEASVIICR 443
Query: 121 FLDDIAGHK 129
+DD A ++
Sbjct: 444 VIDDTATYE 452
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1
pdb|1HXA|A Chain A, Crystal Structure Of Teas W273s Form 2
Length = 548
Score = 90.5 bits (223), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 77/129 (59%), Gaps = 1/129 (0%)
Query: 1 WDIGHIDALPEYMKFIFKTLIGVYSEAEEELSKERRSYSIQYAIRSFQELVMKYFCEAKW 60
WDI ID LP+YMK +K ++ +Y + E+ELS RS+ + +AI +E+V Y E+ W
Sbjct: 323 WDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNVESTW 382
Query: 61 LNEGYVPSMDEYKSVSLRSIGFLPIAVASFIFMGDIASREIFEWEMSNPKIIIAAETIFR 120
EGY P + EY S +L + + +A S++ M A+ + FEW NPKI+ A+ I R
Sbjct: 383 FIEGYTPPVSEYLSNALATTTYYYLATTSYLGMKS-ATEQDFEWLSKNPKILEASVIICR 441
Query: 121 FLDDIAGHK 129
+DD A ++
Sbjct: 442 VIDDTATYE 450
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 90.5 bits (223), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 77/129 (59%), Gaps = 1/129 (0%)
Query: 1 WDIGHIDALPEYMKFIFKTLIGVYSEAEEELSKERRSYSIQYAIRSFQELVMKYFCEAKW 60
WDI ID LP+YMK +K ++ +Y + E+ELS RS+ + +AI +E+V Y E+ W
Sbjct: 323 WDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNVESTW 382
Query: 61 LNEGYVPSMDEYKSVSLRSIGFLPIAVASFIFMGDIASREIFEWEMSNPKIIIAAETIFR 120
EGY P + EY S +L + + +A S++ M A+ + FEW NPKI+ A+ I R
Sbjct: 383 FIEGYTPPVSEYLSNALATTTYYYLATTSYLGMKS-ATEQDFEWLSKNPKILEASVIICR 441
Query: 121 FLDDIAGHK 129
+DD A ++
Sbjct: 442 VIDDTATYE 450
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase
From Nicotiana Tobaccum With Geraniline
Length = 535
Score = 90.5 bits (223), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 77/129 (59%), Gaps = 1/129 (0%)
Query: 1 WDIGHIDALPEYMKFIFKTLIGVYSEAEEELSKERRSYSIQYAIRSFQELVMKYFCEAKW 60
WDI ID LP+YMK +K ++ +Y + E+ELS RS+ + +AI +E+V Y E+ W
Sbjct: 310 WDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNVESTW 369
Query: 61 LNEGYVPSMDEYKSVSLRSIGFLPIAVASFIFMGDIASREIFEWEMSNPKIIIAAETIFR 120
EGY P + EY S +L + + +A S++ M A+ + FEW NPKI+ A+ I R
Sbjct: 370 FIEGYTPPVSEYLSNALATTTYYYLATTSYLGMKS-ATEQDFEWLSKNPKILEASVIICR 428
Query: 121 FLDDIAGHK 129
+DD A ++
Sbjct: 429 VIDDTATYE 437
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With
Substrate Analog Farnesyl Hydroxyphosphonate
Length = 548
Score = 90.5 bits (223), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 77/129 (59%), Gaps = 1/129 (0%)
Query: 1 WDIGHIDALPEYMKFIFKTLIGVYSEAEEELSKERRSYSIQYAIRSFQELVMKYFCEAKW 60
WDI ID LP+YMK +K ++ +Y + E+ELS RS+ + +AI +E+V Y E+ W
Sbjct: 323 WDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNVESTW 382
Query: 61 LNEGYVPSMDEYKSVSLRSIGFLPIAVASFIFMGDIASREIFEWEMSNPKIIIAAETIFR 120
EGY P + EY S +L + + +A S++ M A+ + FEW NPKI+ A+ I R
Sbjct: 383 FIEGYTPPVSEYLSNALATTTYYYLATTSYLGMKS-ATEQDFEWLSKNPKILEASVIICR 441
Query: 121 FLDDIAGHK 129
+DD A ++
Sbjct: 442 VIDDTATYE 450
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphosphate
pdb|3M02|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 90.5 bits (223), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 77/129 (59%), Gaps = 1/129 (0%)
Query: 1 WDIGHIDALPEYMKFIFKTLIGVYSEAEEELSKERRSYSIQYAIRSFQELVMKYFCEAKW 60
WDI ID LP+YMK +K ++ +Y + E+ELS RS+ + +AI +E+V Y E+ W
Sbjct: 325 WDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNVESTW 384
Query: 61 LNEGYVPSMDEYKSVSLRSIGFLPIAVASFIFMGDIASREIFEWEMSNPKIIIAAETIFR 120
EGY P + EY S +L + + +A S++ M A+ + FEW NPKI+ A+ I R
Sbjct: 385 FIEGYTPPVSEYLSNALATTTYYYLATTSYLGMKS-ATEQDFEWLSKNPKILEASVIICR 443
Query: 121 FLDDIAGHK 129
+DD A ++
Sbjct: 444 VIDDTATYE 452
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 90.5 bits (223), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 77/129 (59%), Gaps = 1/129 (0%)
Query: 1 WDIGHIDALPEYMKFIFKTLIGVYSEAEEELSKERRSYSIQYAIRSFQELVMKYFCEAKW 60
WDI ID LP+YMK +K ++ +Y + E+ELS RS+ + +AI +E+V Y E+ W
Sbjct: 323 WDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNVESTW 382
Query: 61 LNEGYVPSMDEYKSVSLRSIGFLPIAVASFIFMGDIASREIFEWEMSNPKIIIAAETIFR 120
EGY P + EY S +L + + +A S++ M A+ + FEW NPKI+ A+ I R
Sbjct: 383 FIEGYTPPVSEYLSNALATTTYYYLATTSYLGMKS-ATEQDFEWLSKNPKILEASVIICR 441
Query: 121 FLDDIAGHK 129
+DD A ++
Sbjct: 442 VIDDTATYE 450
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1B|B Chain B, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1Z|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N1Z|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N20|A Chain A, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N20|B Chain B, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N21|A Chain A, (+)-Bornyl Diphosphate Synthase: Cocrystal With Mg And 3-
Aza-2,3-Dihydrogeranyl Diphosphate
pdb|1N22|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N22|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N23|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N23|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N24|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
pdb|1N24|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
Length = 549
Score = 62.8 bits (151), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 60/127 (47%), Gaps = 1/127 (0%)
Query: 1 WDIGHIDALPEYMKFIFKTLIGVYSEAEEELSKERRSYSIQYAIRSFQELVMKYFCEAKW 60
WD I LP YM+ + + S+A ++ KE + +QY +S +LV YF EAKW
Sbjct: 324 WDTESITRLPYYMQLCYWGVHNYISDAAYDILKEHGFFCLQYLRKSVVDLVEAYFHEAKW 383
Query: 61 LNEGYVPSMDEYKSVSLRSIGFLPIAVAS-FIFMGDIASREIFEWEMSNPKIIIAAETIF 119
+ GY PS+DEY +++ S+ I + F F + + I+ A I
Sbjct: 384 YHSGYTPSLDEYLNIAKISVASPAIISPTYFTFANASHDTAVIDSLYQYHDILCLAGIIL 443
Query: 120 RFLDDIA 126
R DD+
Sbjct: 444 RLPDDLG 450
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONG|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONH|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
pdb|2ONH|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
Length = 543
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 60/126 (47%)
Query: 1 WDIGHIDALPEYMKFIFKTLIGVYSEAEEELSKERRSYSIQYAIRSFQELVMKYFCEAKW 60
WDI ID LP+YM+ F L + ++ KE+ I Y +S+ +L KY EA+W
Sbjct: 318 WDINSIDQLPDYMQLCFLALNNFVDDTSYDVMKEKGVNVIPYLRQSWVDLADKYMVEARW 377
Query: 61 LNEGYVPSMDEYKSVSLRSIGFLPIAVASFIFMGDIASREIFEWEMSNPKIIIAAETIFR 120
G+ PS++EY S +SI + F + D ++E + ++ + + R
Sbjct: 378 FYGGHKPSLEEYLENSWQSISGPCMLTHIFFRVTDSFTKETVDSLYKYHDLVRWSSFVLR 437
Query: 121 FLDDIA 126
DD+
Sbjct: 438 LADDLG 443
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution.
pdb|2J5C|B Chain B, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution
Length = 569
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 59/126 (46%)
Query: 1 WDIGHIDALPEYMKFIFKTLIGVYSEAEEELSKERRSYSIQYAIRSFQELVMKYFCEAKW 60
WDI + LP YM+ + L +E + +++ S Y + + L+ Y EAKW
Sbjct: 345 WDIESMKQLPPYMQICYLALFNFVNEMAYDTLRDKGFDSTPYLRKVWVGLIESYLIEAKW 404
Query: 61 LNEGYVPSMDEYKSVSLRSIGFLPIAVASFIFMGDIASREIFEWEMSNPKIIIAAETIFR 120
+G+ PS++EY S SIG +PI F + D E E I+ A+ TI R
Sbjct: 405 YYKGHKPSLEEYMKNSWISIGGIPILSHLFFRLTDSIEEEAAESMHKYHDIVRASCTILR 464
Query: 121 FLDDIA 126
DD+
Sbjct: 465 LADDMG 470
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDQ|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDR|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDT|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDU|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDV|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
Length = 817
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 67/133 (50%), Gaps = 5/133 (3%)
Query: 1 WDIGHIDALPEYMKFIFKTLIGVYSEAEEELSKERRSYSIQYAIRSFQELVMKYFCEAKW 60
WD+ + LP+YMK ++ + E E KE+ + + + +++ ++ Y+ EA+W
Sbjct: 588 WDLSFTENLPDYMKLCYQIYYDIVHEVAWEAEKEQGRELVSFFRKGWEDYLLGYYEEAEW 647
Query: 61 LNEGYVPSMDEYKSVSLRSIGFLPIAVASFIFM-GDIASREIFEWEMSNPKIIIAAE--- 116
L YVP++DEY + SIG + ++ + M G + S+E E ++ P + E
Sbjct: 648 LAAEYVPTLDEYIKNGITSIGQRILLLSGVLIMDGQLLSQEALE-KVDYPGRRVLTELNS 706
Query: 117 TIFRFLDDIAGHK 129
I R DD +K
Sbjct: 707 LISRLADDTKTYK 719
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0F|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0G|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
pdb|3N0G|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
Length = 555
Score = 55.5 bits (132), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 61/128 (47%), Gaps = 2/128 (1%)
Query: 1 WDIGHIDALPEYMKFIFKTLIGVYSEAEEELSKERRSYSIQYAIRSFQELVMKYFCEAKW 60
WD+ I+ LP+YMK F L +E + K++ + Y +++ +L + EAKW
Sbjct: 327 WDVNAINDLPDYMKLCFLALYNTINEIAYDNLKDKGENILPYLTKAWADLCNAFLQEAKW 386
Query: 61 LNEGYVPSMDEYKSVSLR-SIGFLPIAVASFIFMGDIASREIFEWEMSNPKIIIAAETIF 119
L P+ D+Y + + S G L + A F + +I EI + + II IF
Sbjct: 387 LYNKSTPTFDDYFGNAWKSSSGPLQLIFAYFAVVQNIKKEEIENLQKYH-DIISRPSHIF 445
Query: 120 RFLDDIAG 127
R +D+A
Sbjct: 446 RLCNDLAS 453
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3P5R|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
pdb|3P5R|B Chain B, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
Length = 764
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 47/103 (45%)
Query: 1 WDIGHIDALPEYMKFIFKTLIGVYSEAEEELSKERRSYSIQYAIRSFQELVMKYFCEAKW 60
WD + +PE M+ FK + E ++ K + + + + ++ Y E +W
Sbjct: 529 WDTSLLHEIPECMQTCFKVWFKLMEEVNNDVVKVQGRDMLAHIRKPWELYFNCYVQEREW 588
Query: 61 LNEGYVPSMDEYKSVSLRSIGFLPIAVASFIFMGDIASREIFE 103
L GY+P+ +EY S+G P + + MG++ ++ E
Sbjct: 589 LEAGYIPTFEEYLKTYAISVGLGPCTLQPILLMGELVKDDVVE 631
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis
pdb|3S9V|B Chain B, Abietadiene Synthase From Abies Grandis
pdb|3S9V|C Chain C, Abietadiene Synthase From Abies Grandis
pdb|3S9V|D Chain D, Abietadiene Synthase From Abies Grandis
Length = 785
Score = 48.9 bits (115), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 54/103 (52%), Gaps = 2/103 (1%)
Query: 1 WDIGHIDALPEYMKFIFKTLIGVYSEAEEELSKERRSYSIQYAIRSFQELVMK-YFCEAK 59
WD+ +D +P+ MK F +++ +E +ER+ + I++ ++ ++ Y EA+
Sbjct: 560 WDLSLVDQMPQQMKICFVGFYNTFNDIAKE-GRERQGRDVLGYIQNVWKVQLEAYTKEAE 618
Query: 60 WLNEGYVPSMDEYKSVSLRSIGFLPIAVASFIFMGDIASREIF 102
W YVPS +EY + SI + + S +F G++ + E+
Sbjct: 619 WSEAKYVPSFNEYIENASVSIALGTVVLISALFTGEVLTDEVL 661
>pdb|1TF2|A Chain A, Crystal Structure Of Seca:adp In An Open Conformation From
Bacillus Subtilis
pdb|1TF5|A Chain A, Crystal Structure Of Seca In An Open Conformation From
Bacillus Subtilis
Length = 844
Score = 32.0 bits (71), Expect = 0.092, Method: Composition-based stats.
Identities = 17/70 (24%), Positives = 40/70 (57%), Gaps = 11/70 (15%)
Query: 11 EYMKFIFKTLIGVYSEAEEELSKERRSYSIQYAIRSFQELVMKYFCEAKWLNEGYVPSMD 70
E ++ I +I Y+E EE+ KE+ +R F+++++ ++KW++ ++ +MD
Sbjct: 686 EMLELIMDRIITKYNEKEEQFGKEQ--------MREFEKVIVLRAVDSKWMD--HIDAMD 735
Query: 71 EYKS-VSLRS 79
+ + + LR+
Sbjct: 736 QLRQGIHLRA 745
>pdb|3IQY|A Chain A, Active Site Mutants Of B. Subtilis Seca
Length = 841
Score = 32.0 bits (71), Expect = 0.093, Method: Composition-based stats.
Identities = 17/70 (24%), Positives = 40/70 (57%), Gaps = 11/70 (15%)
Query: 11 EYMKFIFKTLIGVYSEAEEELSKERRSYSIQYAIRSFQELVMKYFCEAKWLNEGYVPSMD 70
E ++ I +I Y+E EE+ KE+ +R F+++++ ++KW++ ++ +MD
Sbjct: 683 EMLELIMDRIITKYNEKEEQFGKEQ--------MREFEKVIVLRAVDSKWMD--HIDAMD 732
Query: 71 EYKS-VSLRS 79
+ + + LR+
Sbjct: 733 QLRQGIHLRA 742
>pdb|3IQM|A Chain A, Active Site Mutants Of B. Subtilis Seca
Length = 802
Score = 31.6 bits (70), Expect = 0.12, Method: Composition-based stats.
Identities = 17/70 (24%), Positives = 40/70 (57%), Gaps = 11/70 (15%)
Query: 11 EYMKFIFKTLIGVYSEAEEELSKERRSYSIQYAIRSFQELVMKYFCEAKWLNEGYVPSMD 70
E ++ I +I Y+E EE+ KE+ +R F+++++ ++KW++ ++ +MD
Sbjct: 683 EMLELIMDRIITKYNEKEEQFGKEQ--------MREFEKVIVLRAVDSKWMD--HIDAMD 732
Query: 71 EYKS-VSLRS 79
+ + + LR+
Sbjct: 733 QLRQGIHLRA 742
>pdb|1M6N|A Chain A, Crystal Structure Of The Seca Translocation Atpase From
Bacillus Subtilis
pdb|1M74|A Chain A, Crystal Structure Of Mg-Adp-Bound Seca From Bacillus
Subtilis
Length = 802
Score = 31.6 bits (70), Expect = 0.12, Method: Composition-based stats.
Identities = 17/70 (24%), Positives = 40/70 (57%), Gaps = 11/70 (15%)
Query: 11 EYMKFIFKTLIGVYSEAEEELSKERRSYSIQYAIRSFQELVMKYFCEAKWLNEGYVPSMD 70
E ++ I +I Y+E EE+ KE+ +R F+++++ ++KW++ ++ +MD
Sbjct: 683 EMLELIMDRIITKYNEKEEQFGKEQ--------MREFEKVIVLRAVDSKWMD--HIDAMD 732
Query: 71 EYKS-VSLRS 79
+ + + LR+
Sbjct: 733 QLRQGIHLRA 742
>pdb|3JV2|A Chain A, Crystal Structure Of B. Subtilis Seca With Bound Peptide
pdb|3JV2|B Chain B, Crystal Structure Of B. Subtilis Seca With Bound Peptide
Length = 783
Score = 31.6 bits (70), Expect = 0.12, Method: Composition-based stats.
Identities = 17/70 (24%), Positives = 40/70 (57%), Gaps = 11/70 (15%)
Query: 11 EYMKFIFKTLIGVYSEAEEELSKERRSYSIQYAIRSFQELVMKYFCEAKWLNEGYVPSMD 70
E ++ I +I Y+E EE+ KE+ +R F+++++ ++KW++ ++ +MD
Sbjct: 686 EMLELIMDRIITKYNEKEEQFGKEQ--------MREFEKVIVLRAVDSKWMD--HIDAMD 735
Query: 71 EYKS-VSLRS 79
+ + + LR+
Sbjct: 736 QLRQGIHLRA 745
>pdb|3DL8|A Chain A, Structure Of The Complex Of Aquifex Aeolicus Secyeg And
Bacillus Subtilis Seca
pdb|3DL8|B Chain B, Structure Of The Complex Of Aquifex Aeolicus Secyeg And
Bacillus Subtilis Seca
Length = 779
Score = 31.6 bits (70), Expect = 0.13, Method: Composition-based stats.
Identities = 17/70 (24%), Positives = 40/70 (57%), Gaps = 11/70 (15%)
Query: 11 EYMKFIFKTLIGVYSEAEEELSKERRSYSIQYAIRSFQELVMKYFCEAKWLNEGYVPSMD 70
E ++ I +I Y+E EE+ KE+ +R F+++++ ++KW++ ++ +MD
Sbjct: 683 EMLELIMDRIITKYNEKEEQFGKEQ--------MREFEKVIVLRAVDSKWMD--HIDAMD 732
Query: 71 EYKS-VSLRS 79
+ + + LR+
Sbjct: 733 QLRQGIHLRA 742
>pdb|2IBM|A Chain A, A Novel Dimer Interface And Conformational Changes
Revealed By An X- Ray Structure Of B. Subtilis Seca
pdb|2IBM|B Chain B, A Novel Dimer Interface And Conformational Changes
Revealed By An X- Ray Structure Of B. Subtilis Seca
Length = 780
Score = 31.6 bits (70), Expect = 0.13, Method: Composition-based stats.
Identities = 17/70 (24%), Positives = 40/70 (57%), Gaps = 11/70 (15%)
Query: 11 EYMKFIFKTLIGVYSEAEEELSKERRSYSIQYAIRSFQELVMKYFCEAKWLNEGYVPSMD 70
E ++ I +I Y+E EE+ KE+ +R F+++++ ++KW++ ++ +MD
Sbjct: 683 EMLELIMDRIITKYNEKEEQFGKEQ--------MREFEKVIVLRAVDSKWMD--HIDAMD 732
Query: 71 EYKS-VSLRS 79
+ + + LR+
Sbjct: 733 QLRQGIHLRA 742
>pdb|3C9G|A Chain A, Crystal Structure Of Uncharacterized Upf0201 Protein
Af_135
pdb|3C9G|B Chain B, Crystal Structure Of Uncharacterized Upf0201 Protein
Af_135
Length = 142
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 16 IFKTLIGVYSEAEEELSKERRSYSIQYAIRSFQELVMK 53
+ K + ++ +AE E+S+E Y Y++ F+EL+ K
Sbjct: 25 VLKAIRNIFPDAEIEISEEGEVYGRAYSLDRFRELLRK 62
>pdb|1LC0|A Chain A, Structure Of Biliverdin Reductase And The Enzyme-Nadh
Complex
pdb|1LC3|A Chain A, Crystal Structure Of A Biliverdin Reductase
Enzyme-Cofactor Complex
Length = 294
Score = 25.8 bits (55), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 17 FKTLIGVYSEAEEELSKERRSYSIQYAIRSFQELVMKYFCEAKWLNEGYV 66
F LIG S E E R S++ A+RS QE+ + Y C +E Y+
Sbjct: 34 FLNLIGFVSRRELGSLDEVRQISLEDALRS-QEIDVAYICSESSSHEDYI 82
>pdb|1GCU|A Chain A, Crystal Structure Of Rat Biliverdin Reductase At 1.4 A
Length = 295
Score = 25.8 bits (55), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 17 FKTLIGVYSEAEEELSKERRSYSIQYAIRSFQELVMKYFCEAKWLNEGYV 66
F LIG S E E R S++ A+RS QE+ + Y C +E Y+
Sbjct: 35 FLNLIGFVSRRELGSLDEVRQISLEDALRS-QEIDVAYICSESSSHEDYI 83
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,586,220
Number of Sequences: 62578
Number of extensions: 122865
Number of successful extensions: 376
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 346
Number of HSP's gapped (non-prelim): 29
length of query: 129
length of database: 14,973,337
effective HSP length: 88
effective length of query: 41
effective length of database: 9,466,473
effective search space: 388125393
effective search space used: 388125393
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 45 (21.9 bits)