Query 040006
Match_columns 129
No_of_seqs 103 out of 689
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 06:08:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040006.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040006hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g4d_A (+)-delta-cadinene synt 100.0 6.1E-43 2.1E-47 292.2 13.8 129 1-129 329-457 (554)
2 3m00_A Aristolochene synthase; 100.0 2.1E-42 7E-47 288.8 13.3 128 1-129 325-452 (550)
3 3n0f_A Isoprene synthase; terp 100.0 4.2E-42 1.5E-46 287.3 12.9 129 1-129 327-455 (555)
4 2ong_A 4S-limonene synthase; m 100.0 7.1E-39 2.4E-43 267.6 14.0 129 1-129 318-446 (543)
5 2j5c_A 1,8-cineole synthase; t 100.0 8.1E-39 2.8E-43 268.4 14.0 129 1-129 345-473 (569)
6 3p5p_A Taxadiene synthase; cla 100.0 6.3E-39 2.1E-43 276.0 12.9 128 1-129 529-657 (764)
7 3s9v_A Abietadiene synthase, c 100.0 4.8E-39 1.6E-43 277.3 12.0 128 1-129 560-688 (785)
8 3sdr_A Alpha-bisabolene syntha 100.0 9E-39 3.1E-43 276.5 13.2 129 1-129 588-719 (817)
9 1n1b_A (+)-bornyl diphosphate 100.0 1.6E-38 5.4E-43 265.8 13.4 129 1-129 324-453 (549)
10 1di1_A Aristolochene synthase; 99.9 1.8E-25 6.1E-30 172.4 8.9 111 7-129 101-211 (300)
11 1ps1_A Pentalenene synthase; a 99.9 4E-25 1.4E-29 173.3 5.9 117 8-129 108-225 (337)
12 3kb9_A EPI-isozizaene synthase 99.9 1.5E-24 5.1E-29 174.0 5.7 116 9-129 152-267 (382)
13 3bny_A Aristolochene synthase; 99.9 8.7E-24 3E-28 164.6 8.2 111 7-129 115-225 (320)
14 3v1v_A 2-MIB synthase, 2-methy 99.8 5.5E-20 1.9E-24 150.1 6.5 108 16-129 237-344 (433)
15 3pya_A ENT-copalyl diphosphate 99.7 5.3E-17 1.8E-21 139.2 5.8 99 10-129 554-654 (727)
16 1yyq_A Trichodiene synthase; t 92.6 0.31 1.1E-05 38.7 6.7 89 32-128 139-230 (374)
17 3lmd_A Geranylgeranyl pyrophos 86.6 3 0.0001 32.8 7.9 83 38-127 160-244 (360)
18 2q80_A Geranylgeranyl pyrophos 84.1 12 0.00041 28.4 10.3 82 38-127 111-193 (301)
19 3nf2_A Putative polyprenyl syn 82.9 9.9 0.00034 29.6 9.3 83 39-127 144-228 (352)
20 3rmg_A Octaprenyl-diphosphate 82.5 11 0.00039 29.0 9.5 85 38-128 133-219 (334)
21 3mzv_A Decaprenyl diphosphate 81.0 14 0.00049 28.6 9.6 85 38-128 139-225 (341)
22 3oyr_A Trans-isoprenyl diphosp 80.7 17 0.0006 28.2 10.0 85 38-128 151-237 (345)
23 3aqb_B Component B of hexapren 79.0 19 0.00067 27.5 9.7 84 38-127 130-215 (325)
24 2e8v_A Geranylgeranyl pyrophos 77.8 13 0.00045 28.7 8.4 83 39-127 132-218 (340)
25 4dhd_A Polyprenyl synthetase; 77.5 14 0.00049 28.8 8.6 85 38-127 132-229 (358)
26 1wmw_A Geranylgeranyl diphosph 75.7 16 0.00055 28.0 8.3 83 38-127 130-216 (330)
27 3pko_A Geranylgeranyl pyrophos 74.2 25 0.00087 27.0 9.2 83 39-127 144-228 (334)
28 1wy0_A Geranylgeranyl pyrophos 73.8 22 0.00074 27.4 8.7 83 39-127 138-222 (342)
29 1v4e_A Octoprenyl-diphosphate 73.0 16 0.00055 27.7 7.6 79 38-127 127-208 (299)
30 3ipi_A Geranyltranstransferase 72.9 28 0.00097 26.4 9.7 83 38-127 127-211 (295)
31 2q58_A Fragment, farnesyl pyro 72.5 14 0.00047 29.0 7.3 86 39-127 169-258 (368)
32 2ftz_A Geranyltranstransferase 70.5 18 0.0006 27.4 7.3 82 38-127 134-217 (284)
33 2qis_A Farnesyl pyrophosphate 70.5 31 0.001 27.0 8.9 85 38-126 176-267 (374)
34 1uby_A FPS, farnesyl diphospha 69.7 28 0.00097 27.1 8.6 85 38-126 169-260 (367)
35 3m0g_A Farnesyl diphosphate sy 67.7 22 0.00074 27.1 7.3 73 48-128 147-221 (297)
36 1rtr_A Geranyltranstransferase 63.3 30 0.001 26.2 7.4 72 48-126 148-221 (301)
37 3apz_A Geranyl diphosphate syn 62.2 41 0.0014 25.8 8.1 84 38-127 153-238 (348)
38 1yhl_A Farnesyl pyrophosphate 61.7 31 0.0011 26.7 7.4 86 38-127 151-254 (362)
39 3tc1_A Octaprenyl pyrophosphat 61.3 52 0.0018 25.1 9.1 82 38-128 122-205 (315)
40 3lk5_A Geranylgeranyl pyrophos 59.0 63 0.0022 25.3 9.0 78 45-127 182-261 (380)
41 2h8o_A Geranyltranstransferase 56.2 44 0.0015 25.8 7.3 73 48-127 192-266 (335)
42 3kra_B Geranyl diphosphate syn 52.5 49 0.0017 24.7 6.9 72 48-126 149-222 (274)
43 3npk_A Geranyltranstransferase 51.3 66 0.0023 24.2 7.5 74 47-127 144-219 (291)
44 1rqj_A Geranyltranstransferase 51.0 56 0.0019 24.6 7.0 73 48-127 152-227 (299)
45 3p8l_A Geranyltranstransferase 49.7 82 0.0028 23.8 8.0 73 48-127 156-230 (302)
46 3mav_A Farnesyl pyrophosphate 49.3 76 0.0026 24.8 7.8 86 39-127 179-290 (395)
47 2her_A Fragment, farnesyl pyro 47.4 97 0.0033 24.2 8.1 84 38-126 168-257 (368)
48 3pde_A Farnesyl-diphosphate sy 45.9 97 0.0033 23.6 7.7 72 48-126 155-228 (309)
49 3llw_A Geranyltranstransferase 45.1 65 0.0022 24.5 6.6 73 47-126 158-233 (311)
50 3lsn_A Geranyltranstransferase 44.1 1E+02 0.0035 23.3 8.0 73 49-127 153-227 (304)
51 4f62_A Geranyltranstransferase 43.0 1.1E+02 0.0037 23.4 7.7 73 49-127 152-226 (317)
52 3ts7_A Geranyltranstransferase 42.5 1.1E+02 0.0038 23.4 8.8 74 48-127 158-233 (324)
53 3p8r_A Geranyltranstransferase 41.9 99 0.0034 23.3 7.2 74 48-127 158-233 (302)
54 3lom_A Geranyltranstransferase 41.7 1.1E+02 0.0039 23.2 8.5 76 48-127 158-234 (313)
55 1ku3_A Sigma factor SIGA; heli 40.9 38 0.0013 19.3 3.8 47 4-51 6-59 (73)
56 2ww9_B Protein transport prote 37.3 40 0.0014 20.8 3.5 21 63-83 38-58 (80)
57 3t72_q RNA polymerase sigma fa 36.6 53 0.0018 20.6 4.2 46 4-50 15-67 (99)
58 1rh5_B Preprotein translocase 34.7 18 0.00062 22.0 1.6 21 63-83 25-45 (74)
59 1tty_A Sigma-A, RNA polymerase 33.5 43 0.0015 20.0 3.3 46 4-50 14-66 (87)
60 2hza_A Nickel-responsive regul 32.9 95 0.0032 20.4 5.2 35 24-62 13-47 (133)
61 3mp7_B Preprotein translocase 32.8 11 0.00036 22.2 0.3 19 64-82 22-40 (61)
62 1x9b_A Hypothetical membrane p 31.0 70 0.0024 18.0 3.5 29 20-48 21-51 (53)
63 3hug_A RNA polymerase sigma fa 31.0 73 0.0025 19.0 4.1 46 4-50 33-81 (92)
64 2p7v_B Sigma-70, RNA polymeras 30.7 32 0.0011 19.4 2.2 43 5-48 2-51 (68)
65 3uca_A Geranyltranstransferase 30.6 1.8E+02 0.0061 22.2 8.0 74 48-127 180-255 (324)
66 2kw6_A Cyclin-dependent kinase 30.1 88 0.003 18.5 4.5 44 16-59 12-60 (65)
67 2ihi_A Pyrophosphate synthase; 28.3 2.2E+02 0.0074 22.4 8.7 85 38-127 178-290 (395)
68 1lq7_A Alpha3W; three helix bu 26.3 97 0.0033 17.7 5.0 36 18-53 5-40 (67)
69 2wwb_B SEC61gamma, protein tra 26.0 39 0.0013 20.1 2.0 20 64-83 25-44 (68)
70 1ash_A Hemoglobin (OXY); oxyge 22.9 1.2E+02 0.0042 20.4 4.4 42 9-59 105-146 (150)
71 2o8x_A Probable RNA polymerase 22.2 1.1E+02 0.0036 16.7 3.9 45 4-49 11-58 (70)
No 1
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A*
Probab=100.00 E-value=6.1e-43 Score=292.18 Aligned_cols=129 Identities=43% Similarity=0.812 Sum_probs=126.8
Q ss_pred CCccccCcCChhHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHhhhhhhh
Q 040006 1 WDIGHIDALPEYMKFIFKTLIGVYSEAEEELSKERRSYSIQYAIRSFQELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSI 80 (129)
Q Consensus 1 WD~~~~~~Lpeymk~~f~~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~ayl~EakW~~~~~iPt~eEYm~~~~~s~ 80 (129)
||++++++||+|||+||++|+|+++||++++.++||+++++|++++|+++++||++||||+++||+||+||||+||.+|+
T Consensus 329 WD~~~~~~LPeymK~~f~al~~~~~e~~~~~~~~~~~~~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSs 408 (554)
T 3g4d_A 329 WDIKCIDEIPEYMKPSYKALLDVYEEMVQLVAEHGRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTC 408 (554)
T ss_dssp CCGGGGGGSCGGGHHHHHHHHHHHHHHHHHHGGGTCTHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHGGGS
T ss_pred cCccccccCcHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhccceee
Confidence 99999999999999999999999999999999999989999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHhcCCCCChHHHhhhcCchHHHHHHHHHHHHhcccccCC
Q 040006 81 GFLPIAVASFIFMGDIASREIFEWEMSNPKIIIAAETIFRFLDDIAGHK 129 (129)
Q Consensus 81 g~~~~~~~s~~~~g~~~~~e~~~~~~~~p~i~~~~~~i~RL~nDi~s~~ 129 (129)
|+++++++++++||+.+|+++++|+.++|+|++++++|+||+|||+||+
T Consensus 409 g~~~l~~~~~~~mg~~lt~e~~e~~~~~p~i~~~~~~I~RL~NDI~S~k 457 (554)
T 3g4d_A 409 GYAMLAITSFVGMGDIVTPETFKWAASDPKIIQASTIICRFMDDVAEHK 457 (554)
T ss_dssp CHHHHHHHHHHTSCTTSCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHhcCCCCCHHHHHhccccHHHHHHHHHHHHHhcccchhh
Confidence 9999999999999999999999999999999999999999999999985
No 2
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A*
Probab=100.00 E-value=2.1e-42 Score=288.81 Aligned_cols=128 Identities=39% Similarity=0.684 Sum_probs=124.5
Q ss_pred CCccccCcCChhHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHhhhhhhh
Q 040006 1 WDIGHIDALPEYMKFIFKTLIGVYSEAEEELSKERRSYSIQYAIRSFQELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSI 80 (129)
Q Consensus 1 WD~~~~~~Lpeymk~~f~~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~ayl~EakW~~~~~iPt~eEYm~~~~~s~ 80 (129)
||++++++||||||+||++|+|+++|+++++.++||+++++|++++|+++++||++||||+++||+||+||||+||.+|+
T Consensus 325 WD~~~~~~LPeymK~~f~al~~~~~E~~~~~~~~~~~~~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSs 404 (550)
T 3m00_A 325 WDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEIVRNYNVESTWFIEGYTPPVSEYLSNALATT 404 (550)
T ss_dssp CCGGGGGGSCHHHHHHHHHHHHHHHHHHHHHHTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHTGGG
T ss_pred cCccccccCcHHHHHHHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccc
Confidence 99999999999999999999999999999999999989999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHhcCCCCChHHHhhhcCchHHHHHHHHHHHHhcccccCC
Q 040006 81 GFLPIAVASFIFMGDIASREIFEWEMSNPKIIIAAETIFRFLDDIAGHK 129 (129)
Q Consensus 81 g~~~~~~~s~~~~g~~~~~e~~~~~~~~p~i~~~~~~i~RL~nDi~s~~ 129 (129)
|++++++++|+|+ +.+|+++++|+.++|+|++++++|+||+|||+||+
T Consensus 405 g~~~l~~~~f~g~-~~lt~e~~e~~~~~p~i~~~~~~I~RL~NDI~S~k 452 (550)
T 3m00_A 405 TYYLLATTSYLGM-KSATEQDFEWLSKNPKILEASVIICRVIDDTATYE 452 (550)
T ss_dssp SHHHHHHHHHHTC-TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHSHH
T ss_pred hHHHHHHHHHHcC-CCCcHHHHHhhcccHHHHHHHhhhheeeccchhHH
Confidence 9999999999888 77999999999999999999999999999999974
No 3
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A*
Probab=100.00 E-value=4.2e-42 Score=287.25 Aligned_cols=129 Identities=25% Similarity=0.425 Sum_probs=125.3
Q ss_pred CCccccCcCChhHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHhhhhhhh
Q 040006 1 WDIGHIDALPEYMKFIFKTLIGVYSEAEEELSKERRSYSIQYAIRSFQELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSI 80 (129)
Q Consensus 1 WD~~~~~~Lpeymk~~f~~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~ayl~EakW~~~~~iPt~eEYm~~~~~s~ 80 (129)
||++++++||+|||+||.+|+|+++|++.++.+++++++++|++++|+++++||++||||+++||+||+||||+||.+|+
T Consensus 327 WD~~~~~~LPeymk~~~~aL~~~~~e~~~~~~~~~g~~~~~~l~~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSs 406 (555)
T 3n0f_A 327 WDVNAINDLPDYMKLCFLALYNTINEIAYDNLKDKGENILPYLTKAWADLCNAFLQEAKWLYNKSTPTFDDYFGNAWKSS 406 (555)
T ss_dssp TCGGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHT
T ss_pred cCccccccCcHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHhcccch
Confidence 99999999999999999999999999998887877779999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHhcCCCCChHHHhhhcCchHHHHHHHHHHHHhcccccCC
Q 040006 81 GFLPIAVASFIFMGDIASREIFEWEMSNPKIIIAAETIFRFLDDIAGHK 129 (129)
Q Consensus 81 g~~~~~~~s~~~~g~~~~~e~~~~~~~~p~i~~~~~~i~RL~nDi~s~~ 129 (129)
|+++++++++++||+.+|+++++|+.++|+|++++++|+||+|||+||+
T Consensus 407 g~~~l~~~~~~~mg~~lt~e~~e~~~~~p~i~~~~~~i~RL~NDi~S~~ 455 (555)
T 3n0f_A 407 SGPLQLIFAYFAVVQNIKKEEIENLQKYHDIISRPSHIFRLCNDLASAS 455 (555)
T ss_dssp SHHHHHHHHHHHHCSSCCHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhcCCCCCHHHHHhcccchHHHHHHHHHHHHhccchhhh
Confidence 9999999999999999999999999999999999999999999999974
No 4
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A*
Probab=100.00 E-value=7.1e-39 Score=267.61 Aligned_cols=129 Identities=28% Similarity=0.463 Sum_probs=125.9
Q ss_pred CCccccCcCChhHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHhhhhhhh
Q 040006 1 WDIGHIDALPEYMKFIFKTLIGVYSEAEEELSKERRSYSIQYAIRSFQELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSI 80 (129)
Q Consensus 1 WD~~~~~~Lpeymk~~f~~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~ayl~EakW~~~~~iPt~eEYm~~~~~s~ 80 (129)
||.+++++||+|||+||++++++++|++.++.+++++++++|++++|++++++|++||||+++||+||+||||+||.+|+
T Consensus 318 WD~~~~~~lPeymk~~~~aL~~~~~ei~~~~~~~~~~~~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vS~ 397 (543)
T 2ong_A 318 WDINSIDQLPDYMQLCFLALNNFVDDTSYDVMKEKGVNVIPYLRQSWVDLADKYMVEARWFYGGHKPSLEEYLENSWQSI 397 (543)
T ss_dssp TCSSTTTTSCSHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHT
T ss_pred cCccccccCCchhHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhcccccc
Confidence 99999999999999999999999999999888887779999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHhcCCCCChHHHhhhcCchHHHHHHHHHHHHhcccccCC
Q 040006 81 GFLPIAVASFIFMGDIASREIFEWEMSNPKIIIAAETIFRFLDDIAGHK 129 (129)
Q Consensus 81 g~~~~~~~s~~~~g~~~~~e~~~~~~~~p~i~~~~~~i~RL~nDi~s~~ 129 (129)
|+++++++++++||+.+|+++++|+.++|++++++++|+||+|||+||+
T Consensus 398 g~~~l~~~~~~~~g~~~t~e~~e~~~~~p~i~~~~~~i~RL~NDi~S~~ 446 (543)
T 2ong_A 398 SGPCMLTHIFFRVTDSFTKETVDSLYKYHDLVRWSSFVLRLADDLGTSV 446 (543)
T ss_dssp CHHHHHHHHHHHHSSCCCHHHHHHHTTTCHHHHHHHHHHHHHHHHHSSH
T ss_pred hHHHHHHHHHHHcCCCCCHHHHHHhcccHHHHHHHHHHHHHhcccchhh
Confidence 9999999999999999999999999999999999999999999999985
No 5
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa}
Probab=100.00 E-value=8.1e-39 Score=268.41 Aligned_cols=129 Identities=30% Similarity=0.466 Sum_probs=124.6
Q ss_pred CCccccCcCChhHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHhhhhhhh
Q 040006 1 WDIGHIDALPEYMKFIFKTLIGVYSEAEEELSKERRSYSIQYAIRSFQELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSI 80 (129)
Q Consensus 1 WD~~~~~~Lpeymk~~f~~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~ayl~EakW~~~~~iPt~eEYm~~~~~s~ 80 (129)
||.+++++||+|||+||++++++++|++.++.+++++++++|++++|++++++|++||||+++||+||+||||+||.+|+
T Consensus 345 WD~~~~~~lPeymk~~~~aL~~~~~ei~~~~~~~~~~~~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vSs 424 (569)
T 2j5c_A 345 WDIESMKQLPPYMQICYLALFNFVNEMAYDTLRDKGFDSTPYLRKVWVGLIESYLIEAKWYYKGHKPSLEEYMKNSWISI 424 (569)
T ss_dssp TSSGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred cCccccccCCchhHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhcccccc
Confidence 99999999999999999999999999999888887779999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHhcCCCCChHHHhhhcCchHHHHHHHHHHHHhcccccCC
Q 040006 81 GFLPIAVASFIFMGDIASREIFEWEMSNPKIIIAAETIFRFLDDIAGHK 129 (129)
Q Consensus 81 g~~~~~~~s~~~~g~~~~~e~~~~~~~~p~i~~~~~~i~RL~nDi~s~~ 129 (129)
|+++++++++++||+.+|+++++|+.++|++++++++|+||+|||+||+
T Consensus 425 g~~~l~~~~~~~~g~~lt~e~~e~l~~~p~i~~~~~~i~RL~NDI~S~~ 473 (569)
T 2j5c_A 425 GGIPILSHLFFRLTDSIEEEAAESMHKYHDIVRASCTILRLADDMGTSL 473 (569)
T ss_dssp SCHHHHHHHHHHSCSSCCHHHHHHHTTTCHHHHHHHHHHHHHHHHHC--
T ss_pred hHHHHHHHHHHHcCCCCCHHHHHHhhccHHHHHHHHHHHHHhcccchhh
Confidence 9999999999999999999999999999999999999999999999985
No 6
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=100.00 E-value=6.3e-39 Score=275.96 Aligned_cols=128 Identities=21% Similarity=0.454 Sum_probs=123.0
Q ss_pred CCccccCcCChhHHHHHHHHHHHHHHHHHHHHh-hcCcchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHhhhhhh
Q 040006 1 WDIGHIDALPEYMKFIFKTLIGVYSEAEEELSK-ERRSYSIQYAIRSFQELVMKYFCEAKWLNEGYVPSMDEYKSVSLRS 79 (129)
Q Consensus 1 WD~~~~~~Lpeymk~~f~~l~~~~~e~~~~~~~-~~~~~~~~~~~~~~~~l~~ayl~EakW~~~~~iPt~eEYm~~~~~s 79 (129)
||++++++||||||+||++|+++++||++++.+ ||+ ++++|+|++|++++++|++||||+++||+||+||||+||.+|
T Consensus 529 WD~~~~~~LPeymk~~f~aL~~~~~ei~~~~~~~~g~-~~~~yl~~aw~~l~~ayl~EAkW~~~gyvPT~eEYl~na~vS 607 (764)
T 3p5p_A 529 WDTSLLHEIPECMQTCFKVWFKLMEEVNNDVVKVQGR-DMLAHIRKPWELYFNCYVQEREWLEAGYIPTFEEYLKTYAIS 607 (764)
T ss_dssp TSSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSS-CCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred cCchhhhcCchHHHHHHHHHHHHHHHHHHHHHHhcCc-chHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhcchh
Confidence 999999999999999999999999999987766 566 999999999999999999999999999999999999999999
Q ss_pred hchhHHHHHHHHhcCCCCChHHHhhhcCchHHHHHHHHHHHHhcccccCC
Q 040006 80 IGFLPIAVASFIFMGDIASREIFEWEMSNPKIIIAAETIFRFLDDIAGHK 129 (129)
Q Consensus 80 ~g~~~~~~~s~~~~g~~~~~e~~~~~~~~p~i~~~~~~i~RL~nDi~s~~ 129 (129)
+|++++++++++++|+.+|+++++|+..+|+|+++++.|+||+|||+||+
T Consensus 608 sg~~~l~~~~~~~~G~~lt~e~~e~~~~~~~l~~~~~~I~RL~NDi~S~k 657 (764)
T 3p5p_A 608 VGLGPCTLQPILLMGELVKDDVVEKVHYPSNMFELVSLSWRLTNDTKTYQ 657 (764)
T ss_dssp TCHHHHHHHHHHTSSSCCCGGGHHHHSTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHcCCCCcHHHHhhhhhhHHHHHHHHHHHHhhhcccchH
Confidence 99999999999999999999999998888999999999999999999974
No 7
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=100.00 E-value=4.8e-39 Score=277.32 Aligned_cols=128 Identities=22% Similarity=0.415 Sum_probs=123.1
Q ss_pred CCccccCcCChhHHHHHHHHHHHHHHHHHHHHh-hcCcchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHhhhhhh
Q 040006 1 WDIGHIDALPEYMKFIFKTLIGVYSEAEEELSK-ERRSYSIQYAIRSFQELVMKYFCEAKWLNEGYVPSMDEYKSVSLRS 79 (129)
Q Consensus 1 WD~~~~~~Lpeymk~~f~~l~~~~~e~~~~~~~-~~~~~~~~~~~~~~~~l~~ayl~EakW~~~~~iPt~eEYm~~~~~s 79 (129)
||++++++||+|||+||++|+|+++||++++.+ +|+ ++++|+|++|++++++|++||||+++||+||+||||+||.+|
T Consensus 560 WD~~~~~~Lpeymk~~f~aL~~~~nei~~~~~~~~g~-~~~~ylk~aw~~l~~ayl~EAkW~~~gyvPT~eEYl~na~vS 638 (785)
T 3s9v_A 560 WDLSLVDQMPQQMKICFVGFYNTFNDIAKEGRERQGR-DVLGYIQNVWKVQLEAYTKEAEWSEAKYVPSFNEYIENASVS 638 (785)
T ss_dssp TSSSSGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHTS-CCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred cCchhhhcCChhHHHHHHHHHHHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhcccc
Confidence 999999999999999999999999999987766 566 999999999999999999999999999999999999999999
Q ss_pred hchhHHHHHHHHhcCCCCChHHHhhhcCchHHHHHHHHHHHHhcccccCC
Q 040006 80 IGFLPIAVASFIFMGDIASREIFEWEMSNPKIIIAAETIFRFLDDIAGHK 129 (129)
Q Consensus 80 ~g~~~~~~~s~~~~g~~~~~e~~~~~~~~p~i~~~~~~i~RL~nDi~s~~ 129 (129)
+|+++++++++++||+.+|+++++|+..+|+|+++++.|+||+|||+||+
T Consensus 639 ~g~~~l~~~~~~~~G~~lt~e~~e~~~~~~~l~~~~~~I~RL~NDi~S~k 688 (785)
T 3s9v_A 639 IALGTVVLISALFTGEVLTDEVLSKIDRESRFLQLMGLTGRLVNDTKTYQ 688 (785)
T ss_dssp TCHHHHHHHHTTCSSSCCCHHHHTTTSTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHcCCCCCHHHHhcccccHHHHHHHHHHHHHhcccchhh
Confidence 99999999999999999999999998778999999999999999999974
No 8
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=100.00 E-value=9e-39 Score=276.53 Aligned_cols=129 Identities=27% Similarity=0.490 Sum_probs=123.2
Q ss_pred CCccccCcCChhHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHhhhhhhh
Q 040006 1 WDIGHIDALPEYMKFIFKTLIGVYSEAEEELSKERRSYSIQYAIRSFQELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSI 80 (129)
Q Consensus 1 WD~~~~~~Lpeymk~~f~~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~ayl~EakW~~~~~iPt~eEYm~~~~~s~ 80 (129)
||++++++||||||+||++|+++++|+++++.++++.++++|+|++|++++++|++||||+++||+||+||||+||.+|+
T Consensus 588 WD~~~~~~LPeymk~~~~aL~~~~~e~~~~~~~~~g~~~~~~l~~aw~~l~~ayl~EAkW~~~gyvPt~eEYl~na~vS~ 667 (817)
T 3sdr_A 588 WDLSFTENLPDYMKLCYQIYYDIVHEVAWEAEKEQGRELVSFFRKGWEDYLLGYYEEAEWLAAEYVPTLDEYIKNGITSI 667 (817)
T ss_dssp TCGGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHT
T ss_pred cCchhhhcCchHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccc
Confidence 99999999999999999999999999998877776669999999999999999999999999999999999999999999
Q ss_pred chhH-HHHHHHHhcCCCCChHHHhhhc--CchHHHHHHHHHHHHhcccccCC
Q 040006 81 GFLP-IAVASFIFMGDIASREIFEWEM--SNPKIIIAAETIFRFLDDIAGHK 129 (129)
Q Consensus 81 g~~~-~~~~s~~~~g~~~~~e~~~~~~--~~p~i~~~~~~i~RL~nDi~s~~ 129 (129)
|+++ +++++++++|+.+|+++++|+. ++|+|+++++.|+||+|||+||+
T Consensus 668 g~~~ll~~~~~~~~g~~lt~e~~e~~~~~s~p~l~~~~~~I~RL~NDi~S~k 719 (817)
T 3sdr_A 668 GQRILLLSGVLIMDGQLLSQEALEKVDYPGRRVLTELNSLISRLADDTKTYK 719 (817)
T ss_dssp CHHHHHHHHHTTCTTCCCCHHHHHTTCCTTSCSHHHHHHHHHHHHHHHHSSC
T ss_pred cccHHHHHHHHHHcCCCCCHHHHhcccccchHHHHHHHHHHHHHhccchHHH
Confidence 9999 8899999999999999999987 56799999999999999999986
No 9
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A*
Probab=100.00 E-value=1.6e-38 Score=265.77 Aligned_cols=129 Identities=29% Similarity=0.500 Sum_probs=123.4
Q ss_pred CCccccCcCChhHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHhhhhhhh
Q 040006 1 WDIGHIDALPEYMKFIFKTLIGVYSEAEEELSKERRSYSIQYAIRSFQELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSI 80 (129)
Q Consensus 1 WD~~~~~~Lpeymk~~f~~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~ayl~EakW~~~~~iPt~eEYm~~~~~s~ 80 (129)
||.+++++||+|||+||++++++++|++.++.+++++++++|++++|++++++|++||||+++||+||+||||+||.+|+
T Consensus 324 WD~~~~~~lPeymk~~~~aL~d~~~ei~~~~~~~~~~~~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vS~ 403 (549)
T 1n1b_A 324 WDTESITRLPYYMQLCYWGVHNYISDAAYDILKEHGFFCLQYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKISV 403 (549)
T ss_dssp TCSSGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred cCccccccCccHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHhcccch
Confidence 99999999999999999999999999999888887779999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHhcCCCCChHH-HhhhcCchHHHHHHHHHHHHhcccccCC
Q 040006 81 GFLPIAVASFIFMGDIASREI-FEWEMSNPKIIIAAETIFRFLDDIAGHK 129 (129)
Q Consensus 81 g~~~~~~~s~~~~g~~~~~e~-~~~~~~~p~i~~~~~~i~RL~nDi~s~~ 129 (129)
|+++++++++++||+.+|+++ ++|+.++|++++++++|+||+|||+||+
T Consensus 404 g~~~l~~~~~~~~g~~lt~e~~~e~~~~~p~i~~~~~~i~RL~NDi~S~~ 453 (549)
T 1n1b_A 404 ASPAIISPTYFTFANASHDTAVIDSLYQYHDILCLAGIILRLPDDLGTSY 453 (549)
T ss_dssp CHHHHHHHHHTTSTTCCCCHHHHHHHHTTCHHHHHHHHHHHHHHHHC---
T ss_pred hHHHHHHHHHHHcCCCCcHHHHHhhhcccHHHHHHHHHHHHHhcccchhh
Confidence 999999999999999999999 9999999999999999999999999985
No 10
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A
Probab=99.92 E-value=1.8e-25 Score=172.44 Aligned_cols=111 Identities=12% Similarity=0.065 Sum_probs=103.4
Q ss_pred CcCChhHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHhhhhhhhchhHHH
Q 040006 7 DALPEYMKFIFKTLIGVYSEAEEELSKERRSYSIQYAIRSFQELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIGFLPIA 86 (129)
Q Consensus 7 ~~Lpeymk~~f~~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~ayl~EakW~~~~~iPt~eEYm~~~~~s~g~~~~~ 86 (129)
+.+|+|||.+|+++++++++++..+. .+.++.|+.++++|+ ||+|+++|++||++|||+++.+|+|+++++
T Consensus 101 ~~lp~~~~~~~~~l~d~~~~~~~~~~--------~~~~~~~~~~~~~~~-ea~~~~~~~~Ps~eeYl~~r~~s~g~~~~~ 171 (300)
T 1di1_A 101 DVLPDRTKPEEFILYDLWESMRAHDA--------ELANEVLEPTFVFMR-AQTDRARLSIHELGHYLEYREKDVGKALLS 171 (300)
T ss_dssp SSCCCTTCHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH-TTTCCCCCCCCSHHHHHHHHHTCHHHHHHH
T ss_pred CCCCCCccHHHHHHHHHHHHHHhhCh--------HHHHHHHHHHHHHHH-HHhccccCCCCCHHHHHHHHhhhccHHHHH
Confidence 57899999999999999999987652 367788999999998 899999999999999999999999999999
Q ss_pred HHHHHhcCCCCChHHHhhhcCchHHHHHHHHHHHHhcccccCC
Q 040006 87 VASFIFMGDIASREIFEWEMSNPKIIIAAETIFRFLDDIAGHK 129 (129)
Q Consensus 87 ~~s~~~~g~~~~~e~~~~~~~~p~i~~~~~~i~RL~nDi~s~~ 129 (129)
..+++++|..+|+++++ ..|+++++++.++||+|||.||+
T Consensus 172 ~~~~~~~g~~l~~e~~~---~~~~l~~~~~~~~~l~NDl~S~~ 211 (300)
T 1di1_A 172 ALMRFSMGLRLSADELQ---DMKALEANCAKQLSVVNDIYSYD 211 (300)
T ss_dssp HHHHHHHTCCCCHHHHH---TTHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCCCHHHHH---HHHHHHHHHHHHHHHHhhhHHHH
Confidence 99999999999999999 46999999999999999999985
No 11
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A
Probab=99.91 E-value=4e-25 Score=173.26 Aligned_cols=117 Identities=16% Similarity=0.125 Sum_probs=101.0
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHHHhcCCCCC-CHHHHHhhhhhhhchhHHH
Q 040006 8 ALPEYMKFIFKTLIGVYSEAEEELSKERRSYSIQYAIRSFQELVMKYFCEAKWLNEGYVP-SMDEYKSVSLRSIGFLPIA 86 (129)
Q Consensus 8 ~Lpeymk~~f~~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~ayl~EakW~~~~~iP-t~eEYm~~~~~s~g~~~~~ 86 (129)
.+|+||+.+|++++++.++++..+.+ ...+++++.|++++++++.||+|+++|++| |++|||+++.+|+|+++++
T Consensus 108 ~~p~~~~~~~~~l~d~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~Ea~~~~~~~~P~s~eEYl~~r~~s~g~~~~~ 183 (337)
T 1ps1_A 108 PLPDTAPPIAHGFADIWRRTCEGMTP----AWCARSARHWRNYFDGYVDEAESRFWNAPCDSAAQYLAMRRHTIGVQPTV 183 (337)
T ss_dssp CCCTTSCHHHHHHHHHHHHHHTTSCH----HHHHHHHHHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHTCHHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHhccCCH----HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHcccccchhhHH
Confidence 58999999999999999999875332 456899999999999999999999999999 9999999999999999999
Q ss_pred HHHHHhcCCCCChHHHhhhcCchHHHHHHHHHHHHhcccccCC
Q 040006 87 VASFIFMGDIASREIFEWEMSNPKIIIAAETIFRFLDDIAGHK 129 (129)
Q Consensus 87 ~~s~~~~g~~~~~e~~~~~~~~p~i~~~~~~i~RL~nDi~s~~ 129 (129)
..+++++|..+|+++++. ...+++.++++.++||+|||.||+
T Consensus 184 ~~~~~~~g~~l~~~~~~~-p~~~~l~~~~~~i~rL~NDl~S~~ 225 (337)
T 1ps1_A 184 DLAERAGRFEVPHRVFDS-AVMSAMLQIAVDVNLLLNDIASLE 225 (337)
T ss_dssp HHHHHHHTCCCCHHHHTS-HHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHcCCCCCHHHHhC-hHHHHHHHHHHHHHHHHHHHhhHH
Confidence 999999999999988876 455689999999999999999974
No 12
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A*
Probab=99.90 E-value=1.5e-24 Score=173.97 Aligned_cols=116 Identities=10% Similarity=0.033 Sum_probs=106.6
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHhhhhhhhchhHHHHH
Q 040006 9 LPEYMKFIFKTLIGVYSEAEEELSKERRSYSIQYAIRSFQELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIGFLPIAVA 88 (129)
Q Consensus 9 Lpeymk~~f~~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~ayl~EakW~~~~~iPt~eEYm~~~~~s~g~~~~~~~ 88 (129)
+|++++.+|+++.++.++++..+.+. ..+++++.|++++++|++||+|+++|++||++|||+++.+|+|+.++++.
T Consensus 152 ~p~~~~p~~~al~dl~~~~~~~~~~~----~~~r~~~~~~~~~~a~l~Ea~w~~~g~vPs~eEYl~~r~~s~g~~~~~~l 227 (382)
T 3kb9_A 152 HLHHEDTLVAGFADSVRRLYAFLPAT----WNARFARHFHTVIEAYDREFHNRTRGIVPGVEEYLELRRLTFAHWIWTDL 227 (382)
T ss_dssp GTTCSSHHHHHHHHHHHHHTTSSCHH----HHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHccCCHH----HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhhhcCHHHHHHH
Confidence 68999999999999999998654333 36889999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCChHHHhhhcCchHHHHHHHHHHHHhcccccCC
Q 040006 89 SFIFMGDIASREIFEWEMSNPKIIIAAETIFRFLDDIAGHK 129 (129)
Q Consensus 89 s~~~~g~~~~~e~~~~~~~~p~i~~~~~~i~RL~nDi~s~~ 129 (129)
+++++|..++++++++ ...++|+++++.++||+|||.||+
T Consensus 228 ~~~~~g~~l~~~~~~~-p~~~~l~~~~~~i~rL~NDi~S~~ 267 (382)
T 3kb9_A 228 LEPSSGCELPDAVRKH-PAYRRAALLSQEFAAWYNDLCSLP 267 (382)
T ss_dssp HHHHHTCCCCHHHHTS-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCCHHHHhC-hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998 567889999999999999999874
No 13
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A*
Probab=99.89 E-value=8.7e-24 Score=164.63 Aligned_cols=111 Identities=13% Similarity=0.092 Sum_probs=101.2
Q ss_pred CcCChhHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHhhhhhhhchhHHH
Q 040006 7 DALPEYMKFIFKTLIGVYSEAEEELSKERRSYSIQYAIRSFQELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIGFLPIA 86 (129)
Q Consensus 7 ~~Lpeymk~~f~~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~ayl~EakW~~~~~iPt~eEYm~~~~~s~g~~~~~ 86 (129)
+.+|+|||.+|+++++++++++..+ + .+.++.|+.++ +++.|++|.++|++||++|||+++.+|+|+++++
T Consensus 115 ~~~p~~~~~~~~al~d~~~e~~~~~-~-------~~~~~~~~~~~-~~~~e~~~~~~~~~Ps~eeYl~~r~~s~g~~~~~ 185 (320)
T 3bny_A 115 DVLPDRSIPVEYIIYDLWESMRAHD-R-------EMADEILEPVF-LFMRAQTDRTRARPMGLGGYLEYRERDVGKELLA 185 (320)
T ss_dssp SSCCCTTSHHHHHHHHHHHHHHHHH-H-------HHHHHTHHHHH-HHHHHTSCCCCCCCCCHHHHHHHHHTCHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHHHHhhC-H-------HHHHHHHHHHH-HHHHHHhhhccCCCCCHHHHHHHhhhcccHHHHH
Confidence 4789999999999999999998764 2 36677787788 5999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCChHHHhhhcCchHHHHHHHHHHHHhcccccCC
Q 040006 87 VASFIFMGDIASREIFEWEMSNPKIIIAAETIFRFLDDIAGHK 129 (129)
Q Consensus 87 ~~s~~~~g~~~~~e~~~~~~~~p~i~~~~~~i~RL~nDi~s~~ 129 (129)
..+++++|..+|+++++ +.|+|+++++.++||+|||.||+
T Consensus 186 ~~~~~~~g~~l~~e~~~---~~~~l~~~~~~~~~L~NDl~S~~ 225 (320)
T 3bny_A 186 ALMRFSMGLKLSPSELQ---RVREIDANCSKHLSVVNDIYSYE 225 (320)
T ss_dssp HHHHHHHTCCCCHHHHH---HTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCHHHHH---HHHHHHHHHHHHHHHhcccchhH
Confidence 99999999999999998 46999999999999999999874
No 14
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A*
Probab=99.79 E-value=5.5e-20 Score=150.09 Aligned_cols=108 Identities=14% Similarity=0.161 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHhhhhhhhchhHHHHHHHHhcCC
Q 040006 16 IFKTLIGVYSEAEEELSKERRSYSIQYAIRSFQELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIGFLPIAVASFIFMGD 95 (129)
Q Consensus 16 ~f~~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~ayl~EakW~~~~~iPt~eEYm~~~~~s~g~~~~~~~s~~~~g~ 95 (129)
+-++++++.+++...+.+ ....++++.|++++++|++||+|+++||+||++|||+++.+| |+.+++....+++|.
T Consensus 237 ~~~al~d~~~~l~~~a~~----~q~~r~~~~~~~~~~a~l~EA~W~~~g~vPsleEYl~~R~~s-g~~p~~~l~e~~~g~ 311 (433)
T 3v1v_A 237 PRRAYDSAMGYFVRAATP----SQSDRYRHDMARLHLGYLAEGAWAQTGHVPEVWEYLAMRQFN-NFRPCPTITDTVGGY 311 (433)
T ss_dssp HHHHHHHHHHHHHHHSCH----HHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHS-SSTTTGGGHHHHHTC
T ss_pred HHHHHHHHHHHHHhhcCH----HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-hHHHHHHHHHHHcCC
Confidence 467889999999765433 346788999999999999999999999999999999999999 555544556777898
Q ss_pred CCChHHHhhhcCchHHHHHHHHHHHHhcccccCC
Q 040006 96 IASREIFEWEMSNPKIIIAAETIFRFLDDIAGHK 129 (129)
Q Consensus 96 ~~~~e~~~~~~~~p~i~~~~~~i~RL~nDi~s~~ 129 (129)
.++++++++ ....+|.++++.++||+|||.||+
T Consensus 312 ~lp~~v~~~-p~~~~L~~~~~~i~rL~NDI~Sy~ 344 (433)
T 3v1v_A 312 ELPADLHAR-PDMQRVIALAGNATTIVNDLYSYT 344 (433)
T ss_dssp CCCHHHHTS-HHHHHHHHHHHHHHHHHHHHHSHH
T ss_pred CCCHHHHhC-chHHHHHHHHHHHHHHhchHHHHH
Confidence 899999988 456779999999999999999974
No 15
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=99.66 E-value=5.3e-17 Score=139.18 Aligned_cols=99 Identities=11% Similarity=0.041 Sum_probs=72.7
Q ss_pred Chh--HHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHhhhhhhhchhHHHH
Q 040006 10 PEY--MKFIFKTLIGVYSEAEEELSKERRSYSIQYAIRSFQELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIGFLPIAV 87 (129)
Q Consensus 10 pey--mk~~f~~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~ayl~EakW~~~~~iPt~eEYm~~~~~s~g~~~~~~ 87 (129)
|+| ||+||.+|||++||++.++.++++.++++|++++|.+++++|++||+ . +| |. .+..++.+
T Consensus 554 p~~~~mk~~f~aL~~t~nei~~~~~k~qg~~v~~~l~~~W~~~l~s~~~Ea~-~--------~E----Ae--llv~~I~l 618 (727)
T 3pya_A 554 PGSVQASRLAGVLIGTLNQMSFDLFMSHGRDVNNLLYLSWGDWMEKWKLYGD-E--------GE----GE--LMVKMIIL 618 (727)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHSS-C--------CH----HH--HHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHhcc-c--------cc----ee--eeeeeeec
Confidence 888 99999999999999997666555559999999999999999999998 2 44 32 33333333
Q ss_pred HHHHhcCCCCChHHHhhhcCchHHHHHHHHHHHHhcccccCC
Q 040006 88 ASFIFMGDIASREIFEWEMSNPKIIIAAETIFRFLDDIAGHK 129 (129)
Q Consensus 88 ~s~~~~g~~~~~e~~~~~~~~p~i~~~~~~i~RL~nDi~s~~ 129 (129)
++ |..+++ ++.. ..+..|+++++.||||+||+++|+
T Consensus 619 ~s----G~~l~e-~l~~-~ey~~L~~ltn~icrllndl~~~~ 654 (727)
T 3pya_A 619 MK----NNDLTN-FFTH-THFVRLAEIINRICLPRQYLKARR 654 (727)
T ss_dssp HS----SSCGGG-GGSS-HHHHHHHHHHHHHSCCCC------
T ss_pred CC----CcchHh-hccC-hhHHHHHHHHHHHhHHHhHHHHHH
Confidence 33 666777 5554 455669999999999999999985
No 16
>1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant, pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A
Probab=92.61 E-value=0.31 Score=38.71 Aligned_cols=89 Identities=18% Similarity=0.184 Sum_probs=57.4
Q ss_pred HhhcCcchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHhhhhhhhchhHHHHHHHHhcCCCCChHHHh---hhcCc
Q 040006 32 SKERRSYSIQYAIRSFQELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIGFLPIAVASFIFMGDIASREIFE---WEMSN 108 (129)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~l~~ayl~EakW~~~~~iPt~eEYm~~~~~s~g~~~~~~~s~~~~g~~~~~e~~~---~~~~~ 108 (129)
.+.-+.....-+.+.|.+.+.+...|+. +.+-.|+.++|......++|..-.... ++ +++..+. .+...
T Consensus 139 ~~~~~p~~~~rf~~s~~~~~~a~~~Ea~--n~~~~p~~~~Y~~~rR~~sG~~E~~~~-~~-----~P~~~~~e~~~~~~~ 210 (374)
T 1yyq_A 139 LRHFGPFCSLNLIRSTLDFFEGCWIEQY--NFGGFPGSHDYPQFLRRMNGLGHCVGA-SL-----WPKEQFNERSLFLEI 210 (374)
T ss_dssp HTTSCHHHHHHHHHHHHHHHHHHHHHTT--CCCCCTTCTTHHHHHHHHHHCHHHHHH-TT-----CCTTTCCTTTTHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHHHh--ccCCCCCHHHHHHHHHhhccHHHHHHH-hh-----ccccccchhhcchhH
Confidence 3333335556678889999999999986 467789999999987878877543332 22 2333331 11122
Q ss_pred hHHHHHHHHHHHHhcccccC
Q 040006 109 PKIIIAAETIFRFLDDIAGH 128 (129)
Q Consensus 109 p~i~~~~~~i~RL~nDi~s~ 128 (129)
...+.+...+.=++|||-||
T Consensus 211 ~~~i~am~~~i~~~NDIlSf 230 (374)
T 1yyq_A 211 TSAIAQMENWMVWVNDLMSF 230 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhcc
Confidence 34556666677789999875
No 17
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=86.65 E-value=3 Score=32.81 Aligned_cols=83 Identities=20% Similarity=0.242 Sum_probs=58.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHhhhhhhhchhHHHHHHHHh--cCCCCChHHHhhhcCchHHHHHH
Q 040006 38 YSIQYAIRSFQELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIGFLPIAVASFIF--MGDIASREIFEWEMSNPKIIIAA 115 (129)
Q Consensus 38 ~~~~~~~~~~~~l~~ayl~EakW~~~~~iPt~eEYm~~~~~s~g~~~~~~~s~~~--~g~~~~~e~~~~~~~~p~i~~~~ 115 (129)
..+..+-+.+.+++.+-..+..|..+. ||.++|++...--+|...-.+ +.+| ++. .+++..+-+ -++-+..
T Consensus 160 ~~~~~~~~~~~~~~~GQ~ldl~~~~~~--~t~~~y~~~i~~KTg~L~~~a-~~lga~lag-a~~~~~~~l---~~~g~~l 232 (360)
T 3lmd_A 160 DTVAHFAETFGELVTGQMRETVGPRDT--DPIEHYTNVIREKTGVLIASA-GYLGAMHAG-AAPEHIDAL---KNFGAAV 232 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCTTS--CHHHHHHHHHHHHTHHHHHHH-HHHHHHHTT-CCHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCC--CCHHHHHHHHHhhhHHHHHHH-HHHHHHHcC-CCHHHHHHH---HHHHHHH
Confidence 456667788899999999999997655 999999987766555553322 2222 122 355555554 3578899
Q ss_pred HHHHHHhccccc
Q 040006 116 ETIFRFLDDIAG 127 (129)
Q Consensus 116 ~~i~RL~nDi~s 127 (129)
++...+.||+..
T Consensus 233 G~aFQI~DDilD 244 (360)
T 3lmd_A 233 GMIFQIVDDIID 244 (360)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999753
No 18
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=84.12 E-value=12 Score=28.44 Aligned_cols=82 Identities=20% Similarity=0.246 Sum_probs=56.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHhhhhhhhchhHHHHHHHHh-cCCCCChHHHhhhcCchHHHHHHH
Q 040006 38 YSIQYAIRSFQELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIGFLPIAVASFIF-MGDIASREIFEWEMSNPKIIIAAE 116 (129)
Q Consensus 38 ~~~~~~~~~~~~l~~ayl~EakW~~~~~iPt~eEYm~~~~~s~g~~~~~~~s~~~-~g~~~~~e~~~~~~~~p~i~~~~~ 116 (129)
..+..+.+...+++.+-..+..|..+...||.++|++...--+|...-.++..-. ++. .++ ..-++-+..+
T Consensus 111 ~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~~a~-~~~-------~l~~~g~~lG 182 (301)
T 2q80_A 111 DAVKLFTRQLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSD-YKE-------DLKPLLNTLG 182 (301)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCS-------CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHCC-ChH-------HHHHHHHHHH
Confidence 4556677788899999999999987666899999999877666654332222211 222 121 2346788999
Q ss_pred HHHHHhccccc
Q 040006 117 TIFRFLDDIAG 127 (129)
Q Consensus 117 ~i~RL~nDi~s 127 (129)
+...+.||+..
T Consensus 183 ~aFQi~DD~ld 193 (301)
T 2q80_A 183 LFFQIRDDYAN 193 (301)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99999999753
No 19
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=82.86 E-value=9.9 Score=29.64 Aligned_cols=83 Identities=18% Similarity=0.112 Sum_probs=58.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHhhhhhhhchhHHHHHHHHhc--CCCCChHHHhhhcCchHHHHHHH
Q 040006 39 SIQYAIRSFQELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIGFLPIAVASFIFM--GDIASREIFEWEMSNPKIIIAAE 116 (129)
Q Consensus 39 ~~~~~~~~~~~l~~ayl~EakW~~~~~iPt~eEYm~~~~~s~g~~~~~~~s~~~~--g~~~~~e~~~~~~~~p~i~~~~~ 116 (129)
.+..+-+...+++.+-..+..|..+ ..||.++|++...--+|...- +.+-+|. +. .+++..+-+ -.+-+..+
T Consensus 144 ~~~~~~~~~~~l~~GQ~~dl~~~~~-~~~t~~~y~~~i~~KTa~L~~-~~~~~ga~lag-~~~~~~~~l---~~~g~~lG 217 (352)
T 3nf2_A 144 ATRRLTKASRSLIDGQAQDISYEHR-DRVSVEECLEMEGNKTGALLA-CASSIGAVLGG-ADERTADTL---EKYGYHLG 217 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC-SCCCHHHHHHHHHHHTHHHHH-HHHHHHHHHTT-CCHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccC-CCCCHHHHHHHHHcccHHHHH-HHHHHHHHHcC-CCHHHHHHH---HHHHHHHH
Confidence 4566677888999999999999653 478999999877666665533 2233331 22 355555554 35788999
Q ss_pred HHHHHhccccc
Q 040006 117 TIFRFLDDIAG 127 (129)
Q Consensus 117 ~i~RL~nDi~s 127 (129)
+...+.||+..
T Consensus 218 ~aFQi~DD~ld 228 (352)
T 3nf2_A 218 LAFQAVDDLLG 228 (352)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999999753
No 20
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=82.46 E-value=11 Score=29.04 Aligned_cols=85 Identities=15% Similarity=-0.019 Sum_probs=58.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHhhhhhhhchhHHHHHHHHh--cCCCCChHHHhhhcCchHHHHHH
Q 040006 38 YSIQYAIRSFQELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIGFLPIAVASFIF--MGDIASREIFEWEMSNPKIIIAA 115 (129)
Q Consensus 38 ~~~~~~~~~~~~l~~ayl~EakW~~~~~iPt~eEYm~~~~~s~g~~~~~~~s~~~--~g~~~~~e~~~~~~~~p~i~~~~ 115 (129)
..+..+.+....++.+-..+..|.. +..||.++|++...--+|.....+ +-+| ++. .+++..+-+ -.+-+..
T Consensus 133 ~~~~~~~~~~~~~~~GQ~ldl~~~~-~~~~t~~~y~~~i~~KTa~L~~~~-~~~ga~lag-~~~~~~~~l---~~~g~~l 206 (334)
T 3rmg_A 133 EIIRLVSSLGQKLAEGELLQLSNVS-NHSFSEEVYFDVIRKKTAALFAAC-AEAAALSVQ-VGEEEVAFA---RLLGEYI 206 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCC-C--CCHHHHHHHHHHTHHHHHHHH-HHHHHHHTT-CCHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC-CCCCCHHHHHHHHcCChHHHHHHH-HHHHHHHcC-CCHHHHHHH---HHHHHHH
Confidence 4567777888999999999999964 446899999987776666553322 2222 222 355555544 4588899
Q ss_pred HHHHHHhcccccC
Q 040006 116 ETIFRFLDDIAGH 128 (129)
Q Consensus 116 ~~i~RL~nDi~s~ 128 (129)
++...+.||+..+
T Consensus 207 G~aFQi~DD~ld~ 219 (334)
T 3rmg_A 207 GICFQIKDDIFDY 219 (334)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccC
Confidence 9999999998654
No 21
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=81.00 E-value=14 Score=28.57 Aligned_cols=85 Identities=13% Similarity=0.014 Sum_probs=58.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHhhhhhhhchhHHHHHHHHh--cCCCCChHHHhhhcCchHHHHHH
Q 040006 38 YSIQYAIRSFQELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIGFLPIAVASFIF--MGDIASREIFEWEMSNPKIIIAA 115 (129)
Q Consensus 38 ~~~~~~~~~~~~l~~ayl~EakW~~~~~iPt~eEYm~~~~~s~g~~~~~~~s~~~--~g~~~~~e~~~~~~~~p~i~~~~ 115 (129)
..+..+-+....++.+-..+..|.. +..||.++|++...--+|...- +.+.+| ++. .+++..+-+ -++-+..
T Consensus 139 ~~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~t~~~y~~~i~~KTa~L~~-~~~~~ga~lag-~~~~~~~~l---~~~g~~l 212 (341)
T 3mzv_A 139 RVMEILANASAVIAEGEVLQLTAAQ-NLATTEDIYLRVIRGKTAALFS-AATEVGGIIGG-APEDQVQAL---FDYGDAL 212 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT-CTTCCHHHHHHHHHHHTHHHHH-HHHHHHHHHTT-CCHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHcchHHHHH-HHHHHHHHHcC-CCHHHHHHH---HHHHHHH
Confidence 4566677788899999999999964 4568999999876666655432 222332 222 355555544 3578899
Q ss_pred HHHHHHhcccccC
Q 040006 116 ETIFRFLDDIAGH 128 (129)
Q Consensus 116 ~~i~RL~nDi~s~ 128 (129)
++...+.||+..+
T Consensus 213 G~aFQI~DD~ld~ 225 (341)
T 3mzv_A 213 GIAFQIVDDLLDY 225 (341)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998543
No 22
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=80.74 E-value=17 Score=28.18 Aligned_cols=85 Identities=12% Similarity=-0.064 Sum_probs=60.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHhhhhhhhchhHHHHHHHHh--cCCCCChHHHhhhcCchHHHHHH
Q 040006 38 YSIQYAIRSFQELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIGFLPIAVASFIF--MGDIASREIFEWEMSNPKIIIAA 115 (129)
Q Consensus 38 ~~~~~~~~~~~~l~~ayl~EakW~~~~~iPt~eEYm~~~~~s~g~~~~~~~s~~~--~g~~~~~e~~~~~~~~p~i~~~~ 115 (129)
..+..+-+....++.+-..+..|.. +..||.++|++.-.--+|.-.- ..+-+| ++. .+++..+-+ -++-+..
T Consensus 151 ~~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~~~~~y~~~i~~KTa~L~~-~~~~~ga~lag-~~~~~~~~l---~~~g~~l 224 (345)
T 3oyr_A 151 KALEILARASRVIAEGEVLQLMRSH-DLNLSQAVYLEIIQAKTAELFA-AASEAGAVSAG-VDVAKSEAL---RDYGLNL 224 (345)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSS-CSSCCHHHHHHHHHHHTHHHHH-HHHHHHHHHTT-CCHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC-CCCCCHHHHHHHHHcchHHHHH-HHHHHHHHHcC-CCHHHHHHH---HHHHHHH
Confidence 4566777888899999999999854 4468999999877766665533 323333 222 355555554 3578899
Q ss_pred HHHHHHhcccccC
Q 040006 116 ETIFRFLDDIAGH 128 (129)
Q Consensus 116 ~~i~RL~nDi~s~ 128 (129)
++...+.||+..+
T Consensus 225 G~aFQi~DD~lD~ 237 (345)
T 3oyr_A 225 GLAFQLADDALDY 237 (345)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998654
No 23
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=78.99 E-value=19 Score=27.47 Aligned_cols=84 Identities=14% Similarity=0.032 Sum_probs=58.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHhhhhhhhchhHHHHHHHHh--cCCCCChHHHhhhcCchHHHHHH
Q 040006 38 YSIQYAIRSFQELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIGFLPIAVASFIF--MGDIASREIFEWEMSNPKIIIAA 115 (129)
Q Consensus 38 ~~~~~~~~~~~~l~~ayl~EakW~~~~~iPt~eEYm~~~~~s~g~~~~~~~s~~~--~g~~~~~e~~~~~~~~p~i~~~~ 115 (129)
..+..+-+....++.+-..+..|.. +..||.++|++...--+|...-.+ +-+| ++. .+.+..+-+ -++-+..
T Consensus 130 ~~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~~~~~y~~~i~~KTa~L~~~~-~~~ga~lag-~~~~~~~~l---~~~g~~l 203 (325)
T 3aqb_B 130 KFHQIFSKTILEVCFGEFDQMADRF-NYPVSFTAYLRRINRKTAILIEAS-CHLGALSSQ-LDEQSTYHI---KQFGHCI 203 (325)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTT-CCCCCHHHHHHHHHHHTHHHHHHH-HHHHHHTTT-CCHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccc-CCCCCHHHHHHHHHhhHHHHHHHH-HHHHHHHcC-CCHHHHHHH---HHHHHHH
Confidence 3556666778899999999999965 336899999998776666553322 2332 222 355555554 4578899
Q ss_pred HHHHHHhccccc
Q 040006 116 ETIFRFLDDIAG 127 (129)
Q Consensus 116 ~~i~RL~nDi~s 127 (129)
++...+.||+..
T Consensus 204 G~afQi~DD~ld 215 (325)
T 3aqb_B 204 GMSYQIIDDILD 215 (325)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999999753
No 24
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=77.79 E-value=13 Score=28.70 Aligned_cols=83 Identities=16% Similarity=0.107 Sum_probs=54.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCC--CCCCHHHHHhhhhhhhchhHHHHHHHHh--cCCCCChHHHhhhcCchHHHHH
Q 040006 39 SIQYAIRSFQELVMKYFCEAKWLNEG--YVPSMDEYKSVSLRSIGFLPIAVASFIF--MGDIASREIFEWEMSNPKIIIA 114 (129)
Q Consensus 39 ~~~~~~~~~~~l~~ayl~EakW~~~~--~iPt~eEYm~~~~~s~g~~~~~~~s~~~--~g~~~~~e~~~~~~~~p~i~~~ 114 (129)
.+..+-+...+++.+-..+..|..+. ..||.++|++...--+|...-.++ -++ ++. .+.+ . ...-++-+.
T Consensus 132 ~~~~~~~~~~~~~~GQ~ldl~~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~-~~ga~lag-~~~~-~---~~l~~~g~~ 205 (340)
T 2e8v_A 132 LITIFNEELINLHRGQGLDIYWRDFLPEIIPTQEMYLNMVMNKTGGLFRLTL-RLMEALSP-SSHH-G---HSLVPFINL 205 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTSCCCCHHHHHHHHHHHTHHHHHHHH-HHHHHHCC-C----------CHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccCCCCHHHHHHHHHhhhHHHHHHHH-HHHHHHcC-CcHH-H---HHHHHHHHH
Confidence 45566677889999999999998655 578999999987766654433222 222 122 1221 2 233568999
Q ss_pred HHHHHHHhccccc
Q 040006 115 AETIFRFLDDIAG 127 (129)
Q Consensus 115 ~~~i~RL~nDi~s 127 (129)
.++...+.||+..
T Consensus 206 lG~aFQi~DD~ld 218 (340)
T 2e8v_A 206 LGIIYQIRDDYLN 218 (340)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999753
No 25
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=77.50 E-value=14 Score=28.78 Aligned_cols=85 Identities=14% Similarity=0.089 Sum_probs=57.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhc----------CCC-CCCHHHHHhhhhhhhchhHHHHHHHHhc--CCCCChHHHhh
Q 040006 38 YSIQYAIRSFQELVMKYFCEAKWLN----------EGY-VPSMDEYKSVSLRSIGFLPIAVASFIFM--GDIASREIFEW 104 (129)
Q Consensus 38 ~~~~~~~~~~~~l~~ayl~EakW~~----------~~~-iPt~eEYm~~~~~s~g~~~~~~~s~~~~--g~~~~~e~~~~ 104 (129)
..+..+-+....++.+-..+..|.. .+. .||.++|++...--+|...-.+ +.+|. +. .+++..+-
T Consensus 132 ~~~~~~~~~~~~~~~GQ~ldl~~~~~~~~dp~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~-~~~ga~lag-~~~~~~~~ 209 (358)
T 4dhd_A 132 LFAKEVAEVIKAIDEGERLDILFEAAGRSDPYFVQARWREVTLDDYIKMVSLKTGALIAAA-AKWGVLSVS-DDRGLAEA 209 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTBSSCCCCHHHHHTCCSCCCHHHHHHHHHHHTHHHHHHH-HHHHHHHHC-CCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccccccccccccccCCCCCCHHHHHHHHHcchHHHHHHH-HHHHHHHcC-CCHHHHHH
Confidence 3456677788899999999999962 233 6799999987766666553322 22221 12 34555554
Q ss_pred hcCchHHHHHHHHHHHHhccccc
Q 040006 105 EMSNPKIIIAAETIFRFLDDIAG 127 (129)
Q Consensus 105 ~~~~p~i~~~~~~i~RL~nDi~s 127 (129)
+ -++-+..++...+.||+-.
T Consensus 210 l---~~~g~~lG~aFQI~DD~lD 229 (358)
T 4dhd_A 210 A---WNFGMAAGVAFQIIDDVLD 229 (358)
T ss_dssp H---HHHHHHHHHHHHHHHHHHH
T ss_pred H---HHHHHHHHHHHHHHHHHHH
Confidence 4 3578899999999999743
No 26
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=75.69 E-value=16 Score=28.02 Aligned_cols=83 Identities=10% Similarity=0.107 Sum_probs=55.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHH-hcCCCCCCHHHHHhhhhhhhchh-HHHHHHHHh--cCCCCChHHHhhhcCchHHHH
Q 040006 38 YSIQYAIRSFQELVMKYFCEAKW-LNEGYVPSMDEYKSVSLRSIGFL-PIAVASFIF--MGDIASREIFEWEMSNPKIII 113 (129)
Q Consensus 38 ~~~~~~~~~~~~l~~ayl~EakW-~~~~~iPt~eEYm~~~~~s~g~~-~~~~~s~~~--~g~~~~~e~~~~~~~~p~i~~ 113 (129)
..+..+-+....++.+-+.+..| ..+...||.++|++...--+|.. .-. .+-+| ++. .+.+.. + -++-+
T Consensus 130 ~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~~~y~~~i~~KTa~Ls~~~-~~~~ga~lag-~~~~~~--l---~~~g~ 202 (330)
T 1wmw_A 130 EVLLEFHEVVRRTAYGQHLDLLWTLGGTFDLRPEDYFRMVAHKAAYYTAVA-PLRLGALLAG-KTPPAA--Y---EEGGL 202 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCCHHHHHHHHHHHTHHHHHHH-HHHHHHHHTT-CCCCHH--H---HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHHccccHHHHHH-HHHHHHHHcC-CCHHHH--H---HHHHH
Confidence 35566677789999999999999 65435689999998776555544 222 22222 122 122222 2 35788
Q ss_pred HHHHHHHHhccccc
Q 040006 114 AAETIFRFLDDIAG 127 (129)
Q Consensus 114 ~~~~i~RL~nDi~s 127 (129)
..++...+.||+..
T Consensus 203 ~lG~aFQi~DD~ld 216 (330)
T 1wmw_A 203 RLGTAFQIVDDVLN 216 (330)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCc
Confidence 99999999999754
No 27
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=74.23 E-value=25 Score=27.04 Aligned_cols=83 Identities=17% Similarity=0.166 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHhhhhhhhchhHHHHHHHHhc--CCCCChHHHhhhcCchHHHHHHH
Q 040006 39 SIQYAIRSFQELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIGFLPIAVASFIFM--GDIASREIFEWEMSNPKIIIAAE 116 (129)
Q Consensus 39 ~~~~~~~~~~~l~~ayl~EakW~~~~~iPt~eEYm~~~~~s~g~~~~~~~s~~~~--g~~~~~e~~~~~~~~p~i~~~~~ 116 (129)
.+..+.+....++.+-+.+..|.. +..||.++|++...--+|...- +.+-+|. +. .+++..+-+ -++-+..+
T Consensus 144 ~~~~~~~~~~~~~~Gq~~dl~~~~-~~~~~~~~yl~~i~~KTa~L~~-~~~~~ga~lag-~~~~~~~~l---~~~g~~lG 217 (334)
T 3pko_A 144 LIQNHIDAMHRILQGELHQMDLNY-REDITLDAYLNEIAGKTAELFA-LSCYQGAQLAG-APQSVIDRT---RDIGIAIG 217 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTT-CTTCCHHHHHHHHHHTTHHHHH-HHHHHHHHHTT-CCHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHcchHHHHH-HHHHHHHHHcC-CCHHHHHHH---HHHHHHHH
Confidence 455566778889999888888854 4578999999876555554422 2233332 22 355555554 35788899
Q ss_pred HHHHHhccccc
Q 040006 117 TIFRFLDDIAG 127 (129)
Q Consensus 117 ~i~RL~nDi~s 127 (129)
+...+.||+..
T Consensus 218 ~aFQi~DD~ld 228 (334)
T 3pko_A 218 CAYQMLDDILD 228 (334)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999999753
No 28
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=73.80 E-value=22 Score=27.38 Aligned_cols=83 Identities=14% Similarity=0.150 Sum_probs=56.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHhhhhhhhchhHHHHHHHHh--cCCCCChHHHhhhcCchHHHHHHH
Q 040006 39 SIQYAIRSFQELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIGFLPIAVASFIF--MGDIASREIFEWEMSNPKIIIAAE 116 (129)
Q Consensus 39 ~~~~~~~~~~~l~~ayl~EakW~~~~~iPt~eEYm~~~~~s~g~~~~~~~s~~~--~g~~~~~e~~~~~~~~p~i~~~~~ 116 (129)
.+..+-+....++.+-..+..|..+ ...|.++|++...--+|.....+ +.+| ++. .+.+..+-+ -++-+..+
T Consensus 138 ~~~~~~~~~~~~~~GQ~~dl~~~~~-~~~~~~~y~~~i~~KTa~L~~~~-~~~ga~lag-~~~~~~~~l---~~~g~~lG 211 (342)
T 1wy0_A 138 VLEVIVKASNELCEGQARDLEFEKK-STVTIEEYMEMISGKTGALFEAS-AKVGGIIGT-DNEEYIKAL---SSWGRNVG 211 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC-SCCCHHHHHHHHHHHTHHHHHHH-HHHHHHHHC-CCHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccC-CCCCHHHHHHHHHHhhHHHHHHH-HHHHHHHcC-CCHHHHHHH---HHHHHHHH
Confidence 4566667788999999999999753 34599999987776565543322 2222 122 355555554 45788999
Q ss_pred HHHHHhccccc
Q 040006 117 TIFRFLDDIAG 127 (129)
Q Consensus 117 ~i~RL~nDi~s 127 (129)
+...+.||+..
T Consensus 212 ~aFQI~DD~lD 222 (342)
T 1wy0_A 212 IAFQIWDDVLD 222 (342)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999999753
No 29
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=73.01 E-value=16 Score=27.73 Aligned_cols=79 Identities=16% Similarity=0.088 Sum_probs=53.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHhhhhhhhchhHHHHHHHHh---cCCCCChHHHhhhcCchHHHHH
Q 040006 38 YSIQYAIRSFQELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIGFLPIAVASFIF---MGDIASREIFEWEMSNPKIIIA 114 (129)
Q Consensus 38 ~~~~~~~~~~~~l~~ayl~EakW~~~~~iPt~eEYm~~~~~s~g~~~~~~~s~~~---~g~~~~~e~~~~~~~~p~i~~~ 114 (129)
..+..+-+....++.+-..+..|..+. ||.++|++...--+|...-. .+.+| -|. +.+.+ -++-+.
T Consensus 127 ~~~~~~~~~~~~~~~GQ~~dl~~~~~~--~~~~~y~~~i~~KTa~L~~~-~~~~ga~lag~--~~~~l------~~~g~~ 195 (299)
T 1v4e_A 127 KLRRAFLNVIGKMSEAELIEQLSRYKP--ITKEEYLRIVEGKSGALFGL-ALQLPALLEGE--LGEDL------YNLGVT 195 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSC--CCHHHHHHHHHHHTHHHHHH-HHHHHHHHHTC--CCHHH------HHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHccCCC--CCHHHHHHHHHhccHHHHHH-HHHHHHHHcCC--CHHHH------HHHHHH
Confidence 456667778899999999999997655 99999998777655554222 22222 122 11222 347888
Q ss_pred HHHHHHHhccccc
Q 040006 115 AETIFRFLDDIAG 127 (129)
Q Consensus 115 ~~~i~RL~nDi~s 127 (129)
.++...+.||+-.
T Consensus 196 lG~aFQi~DD~lD 208 (299)
T 1v4e_A 196 IGTIYQMFDDIMD 208 (299)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999753
No 30
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=72.92 E-value=28 Score=26.35 Aligned_cols=83 Identities=19% Similarity=0.114 Sum_probs=50.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHhhhhhhhchhHHHHHHHHh--cCCCCChHHHhhhcCchHHHHHH
Q 040006 38 YSIQYAIRSFQELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIGFLPIAVASFIF--MGDIASREIFEWEMSNPKIIIAA 115 (129)
Q Consensus 38 ~~~~~~~~~~~~l~~ayl~EakW~~~~~iPt~eEYm~~~~~s~g~~~~~~~s~~~--~g~~~~~e~~~~~~~~p~i~~~~ 115 (129)
..+..+-++...++.+-..+..|..+ .||.++|++...--+|.-.- ..+.+| ++. .+++..+-+ -++-+..
T Consensus 127 ~~~~~~~~~~~~~~~GQ~~dl~~~~~--~~t~~~y~~~i~~KTg~L~~-~a~~~ga~lag-~~~~~~~~l---~~~g~~l 199 (295)
T 3ipi_A 127 KVIQDFGKAGMDMAEGEVLDLKLEDE--SFGENDYFKCIYKKTASLFA-ISASIGAYTGG-AEEELAERF---SHFGNAL 199 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHTHHHHH-HHHHHHHHHTT-CCHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHccchHHHHccCC--CCCHHHHHHHHHhhhHHHHH-HHHHHHHHHcC-CCHHHHHHH---HHHHHHH
Confidence 34555666777889998989888654 38999999877655555432 222332 122 355555554 3578889
Q ss_pred HHHHHHhccccc
Q 040006 116 ETIFRFLDDIAG 127 (129)
Q Consensus 116 ~~i~RL~nDi~s 127 (129)
++...+.||+..
T Consensus 200 GlaFQI~DDilD 211 (295)
T 3ipi_A 200 GTAYQIVDDILE 211 (295)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999753
No 31
>2q58_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structur genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A*
Probab=72.51 E-value=14 Score=28.95 Aligned_cols=86 Identities=8% Similarity=0.020 Sum_probs=53.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCCC-CHHHHHhhhhhhhchhH---HHHHHHHhcCCCCChHHHhhhcCchHHHHH
Q 040006 39 SIQYAIRSFQELVMKYFCEAKWLNEGYVP-SMDEYKSVSLRSIGFLP---IAVASFIFMGDIASREIFEWEMSNPKIIIA 114 (129)
Q Consensus 39 ~~~~~~~~~~~l~~ayl~EakW~~~~~iP-t~eEYm~~~~~s~g~~~---~~~~s~~~~g~~~~~e~~~~~~~~p~i~~~ 114 (129)
.+..+.+....++.+-..+..|.+.+..| |.++|++.-.-=+|... .+....+.-|...+++..+-+ -++-+.
T Consensus 169 ~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~e~y~~ii~~KTa~l~~~~~~~~g~~~ag~~~~~~~~~~l---~~~g~~ 245 (368)
T 2q58_A 169 IQKIYNESIFFTVLGQHLDLSYFDLSKADKISERYFSMVEMKTSRYTFYMPVFFGLTLSEIQVSSAQLNLI---EAILYK 245 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSCCCSSCSSHHHHHHHHHHHHTHHHHTHHHHHHHHHHSCCCCCCSSTTTH---HHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHhhhcccCCchHHHHHHHHHHHhccccchHHHHHHHHHhCcccchHHHHHH---HHHHHH
Confidence 34445566677888888888888766555 78889886544333321 112222333433444444443 357888
Q ss_pred HHHHHHHhccccc
Q 040006 115 AETIFRFLDDIAG 127 (129)
Q Consensus 115 ~~~i~RL~nDi~s 127 (129)
.++..-+.||+-.
T Consensus 246 lG~aFQI~DDiLD 258 (368)
T 2q58_A 246 LGEFYQVHNDVSD 258 (368)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999999999743
No 32
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=70.52 E-value=18 Score=27.36 Aligned_cols=82 Identities=9% Similarity=-0.008 Sum_probs=54.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHhhhhhhhchhHHHHHHHHh--cCCCCChHHHhhhcCchHHHHHH
Q 040006 38 YSIQYAIRSFQELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIGFLPIAVASFIF--MGDIASREIFEWEMSNPKIIIAA 115 (129)
Q Consensus 38 ~~~~~~~~~~~~l~~ayl~EakW~~~~~iPt~eEYm~~~~~s~g~~~~~~~s~~~--~g~~~~~e~~~~~~~~p~i~~~~ 115 (129)
..+..+-+....++.+-..+..|..+...||.++|++...--+|...-.+ +-+| ++. .+.+.+ -++-+..
T Consensus 134 ~~~~~l~~~~~~~~~GQ~ldl~~~~~~~~~~~~~y~~i~~~KTa~L~~~~-~~~ga~lag-~~~~~l------~~~g~~l 205 (284)
T 2ftz_A 134 XIFEEFSETAYXLLLGEAMDVEFERRXMEVSQEMVERMYAFXTGALFAFC-FSAPFILXG-XDHTXM------XLLGEXF 205 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHTHHHHHHH-HHHHHHHHT-CCCHHH------HHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHhccCcCCCCHHHHHHHHHhhhHHHHHHH-HHHHHHHhC-CChhHH------HHHHHHH
Confidence 35566667778999999999999765447899999997766555543222 2222 122 233311 3578889
Q ss_pred HHHHHHhccccc
Q 040006 116 ETIFRFLDDIAG 127 (129)
Q Consensus 116 ~~i~RL~nDi~s 127 (129)
++...+.||+..
T Consensus 206 G~aFQI~DD~lD 217 (284)
T 2ftz_A 206 GVAFQIYDDLXD 217 (284)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHhhhh
Confidence 999999999743
No 33
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ...
Probab=70.48 E-value=31 Score=27.00 Aligned_cols=85 Identities=16% Similarity=0.102 Sum_probs=58.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhcCCC----CCCHHHHHhhhhhhhchh-HHHHHHHHh--cCCCCChHHHhhhcCchH
Q 040006 38 YSIQYAIRSFQELVMKYFCEAKWLNEGY----VPSMDEYKSVSLRSIGFL-PIAVASFIF--MGDIASREIFEWEMSNPK 110 (129)
Q Consensus 38 ~~~~~~~~~~~~l~~ayl~EakW~~~~~----iPt~eEYm~~~~~s~g~~-~~~~~s~~~--~g~~~~~e~~~~~~~~p~ 110 (129)
..+..+.+....++.+-+.+..|..++. .||.++|+..-.--+|.. .-.. +.+| ++...+++..+-+ -+
T Consensus 176 ~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~d~~~~t~~~y~~i~~~KTa~Lsf~~~-~~~ga~lag~a~~~~~~~l---~~ 251 (374)
T 2qis_A 176 NLIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKSAFYSFYLP-IAAAMYMAGIDGEKEHANA---KK 251 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCTTCCCGGGCCHHHHHHHHHHHTHHHHTHHH-HHHHHHHTTCCCHHHHHHH---HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccccccccccCCHHHHHHHHHcCccHHHHHHH-HHHHHHHcCCCcHHHHHHH---HH
Confidence 3566677788899999999999976544 489999998777655554 2211 1111 2332355666554 46
Q ss_pred HHHHHHHHHHHhcccc
Q 040006 111 IIIAAETIFRFLDDIA 126 (129)
Q Consensus 111 i~~~~~~i~RL~nDi~ 126 (129)
+-+..++...+.||+-
T Consensus 252 ~g~~lG~aFQI~DDiL 267 (374)
T 2qis_A 252 ILLEMGEFFQIQDDYL 267 (374)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8899999999999974
No 34
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A
Probab=69.69 E-value=28 Score=27.13 Aligned_cols=85 Identities=15% Similarity=0.087 Sum_probs=57.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhcCCC----CCCHHHHHhhhhhhhchh-HHHHHHHHh--cCCCCChHHHhhhcCchH
Q 040006 38 YSIQYAIRSFQELVMKYFCEAKWLNEGY----VPSMDEYKSVSLRSIGFL-PIAVASFIF--MGDIASREIFEWEMSNPK 110 (129)
Q Consensus 38 ~~~~~~~~~~~~l~~ayl~EakW~~~~~----iPt~eEYm~~~~~s~g~~-~~~~~s~~~--~g~~~~~e~~~~~~~~p~ 110 (129)
..+..+.+....++.+-+.+..|..++. .+|.++|+..-.--+|.. .-.. +.+| ++...+++..+-+ -+
T Consensus 169 ~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~d~~~~t~~~y~~ii~~KTa~Lsf~~~-~~~ga~lag~~~~~~~~~l---~~ 244 (367)
T 1uby_A 169 HLLELFLQTAYQTELGQMLDLITAPVSKVDLSHFSEERYKAIVKYKTAFYSFYLP-VAAAMYMVGIDSKEEHENA---KA 244 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCTTSCCCTTCCHHHHHHHHHHHTHHHHTHHH-HHHHHHHHTCCCHHHHHHH---HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccccccCCHHHHHHHHHhCchHHHHHHH-HHHHHHHcCCccHHHHHHH---HH
Confidence 3556667778889999999999976543 689999998776655554 2111 1111 1221355555554 45
Q ss_pred HHHHHHHHHHHhcccc
Q 040006 111 IIIAAETIFRFLDDIA 126 (129)
Q Consensus 111 i~~~~~~i~RL~nDi~ 126 (129)
+-+..++...+.||+-
T Consensus 245 ~g~~lG~aFQI~DD~L 260 (367)
T 1uby_A 245 ILLEMGEYFQIQDDYL 260 (367)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7899999999999974
No 35
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=67.70 E-value=22 Score=27.05 Aligned_cols=73 Identities=18% Similarity=0.108 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHhcCCCCCCHHHHHhhhhhhhchhHHHHHHHHh--cCCCCChHHHhhhcCchHHHHHHHHHHHHhccc
Q 040006 48 QELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIGFLPIAVASFIF--MGDIASREIFEWEMSNPKIIIAAETIFRFLDDI 125 (129)
Q Consensus 48 ~~l~~ayl~EakW~~~~~iPt~eEYm~~~~~s~g~~~~~~~s~~~--~g~~~~~e~~~~~~~~p~i~~~~~~i~RL~nDi 125 (129)
..++.+-..+..|...+..||.++|+..-.--+|.-.. +.+-+| ++. .+++.+ -++-+..++...+.||+
T Consensus 147 ~~~~~GQ~lDl~~~~~~~~~~~~~y~~i~~~KTg~L~~-~~~~~ga~lag-~~~~~l------~~~g~~lG~aFQI~DDi 218 (297)
T 3m0g_A 147 EGMVYGQALDIAAETAAVPLTLDEIIRLQAGKTGALIS-FAAQAGAILAG-ADRGPL------TAYATALGLAFQIADDI 218 (297)
T ss_dssp TTHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHTHHHHH-HHHHHHHHHHT-CCCHHH------HHHHHHHHHHHHHHTTC
T ss_pred hHHHHhHHHHHHhhhcCCCCCHHHHHHHHccchHHHHH-HHHHHHHHHcC-CCHHHH------HHHHHHHHHHHHHHHHH
Confidence 56888888899997656789999999876544444322 222222 122 233322 35788999999999998
Q ss_pred ccC
Q 040006 126 AGH 128 (129)
Q Consensus 126 ~s~ 128 (129)
..+
T Consensus 219 lD~ 221 (297)
T 3m0g_A 219 LDV 221 (297)
T ss_dssp C--
T ss_pred Hhc
Confidence 653
No 36
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=63.33 E-value=30 Score=26.20 Aligned_cols=72 Identities=11% Similarity=0.076 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHhcCCCCCCHHHHHhhhhhhhchhHHHHHHHHh--cCCCCChHHHhhhcCchHHHHHHHHHHHHhccc
Q 040006 48 QELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIGFLPIAVASFIF--MGDIASREIFEWEMSNPKIIIAAETIFRFLDDI 125 (129)
Q Consensus 48 ~~l~~ayl~EakW~~~~~iPt~eEYm~~~~~s~g~~~~~~~s~~~--~g~~~~~e~~~~~~~~p~i~~~~~~i~RL~nDi 125 (129)
..++.+-..+..|..+ .||.++|++...--+|...-. .+.+| ++. .+++..+-+ -++-+..++...+.||+
T Consensus 148 ~~~~~GQ~~Dl~~~~~--~~~~~~y~~i~~~KTa~L~~~-~~~~ga~lag-~~~~~~~~l---~~~g~~lG~aFQI~DDi 220 (301)
T 1rtr_A 148 VGMVGGQMLDMQSEGQ--PIDLETLEMIHKTKTGALLTF-AVMSAADIAN-VDDTTKEHL---ESYSYHLGMMFQIKDDL 220 (301)
T ss_dssp TTHHHHHHHHHHTTTS--CCCHHHHHHHHHHHTHHHHHH-HHHHHHHHHT-CCHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccCC--CCCHHHHHHHHHhchHHHHHH-HHHHHHHHcC-CCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 5678888888888653 789999999876666554322 22222 122 456666554 35788999999999997
Q ss_pred c
Q 040006 126 A 126 (129)
Q Consensus 126 ~ 126 (129)
.
T Consensus 221 l 221 (301)
T 1rtr_A 221 L 221 (301)
T ss_dssp H
T ss_pred H
Confidence 4
No 37
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Probab=62.18 E-value=41 Score=25.85 Aligned_cols=84 Identities=15% Similarity=0.044 Sum_probs=54.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHhhhhhhhchhHHHHHHHHh--cCCCCChHHHhhhcCchHHHHHH
Q 040006 38 YSIQYAIRSFQELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIGFLPIAVASFIF--MGDIASREIFEWEMSNPKIIIAA 115 (129)
Q Consensus 38 ~~~~~~~~~~~~l~~ayl~EakW~~~~~iPt~eEYm~~~~~s~g~~~~~~~s~~~--~g~~~~~e~~~~~~~~p~i~~~~ 115 (129)
..+..+-+....++.+-..+..|.. +..||.++|++...--+|.....+ +.+| ++. .+.+..+-+ -++-+..
T Consensus 153 ~~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~~~~~y~~~i~~KTa~L~~~~-~~~ga~lag-~~~~~~~~l---~~~g~~l 226 (348)
T 3apz_A 153 EVVALLATAVEHLVTGETMEITSST-EQRYSMDYYMQKTYYKTASLISNS-CKAVAVLTG-QTAEVAVLA---FEYGRNL 226 (348)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCH-HHHTCHHHHHHHHHHHHTHHHHHH-HHHHHHTTT-CCHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHcchHHHHHHH-HHHHHHHcC-cCHHHHHHH---HHHHHHH
Confidence 3455566677888888888887743 246799999987665555543322 2222 222 345555544 3578889
Q ss_pred HHHHHHhccccc
Q 040006 116 ETIFRFLDDIAG 127 (129)
Q Consensus 116 ~~i~RL~nDi~s 127 (129)
++...+.||+-.
T Consensus 227 G~aFQi~DD~lD 238 (348)
T 3apz_A 227 GLAFQLIDDILD 238 (348)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 999999999753
No 38
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A*
Probab=61.71 E-value=31 Score=26.68 Aligned_cols=86 Identities=8% Similarity=0.001 Sum_probs=55.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHh-----------cCCC----CCCHHHHHhhhhhhhchh-HHHHHHHHh--cCCCCCh
Q 040006 38 YSIQYAIRSFQELVMKYFCEAKWL-----------NEGY----VPSMDEYKSVSLRSIGFL-PIAVASFIF--MGDIASR 99 (129)
Q Consensus 38 ~~~~~~~~~~~~l~~ayl~EakW~-----------~~~~----iPt~eEYm~~~~~s~g~~-~~~~~s~~~--~g~~~~~ 99 (129)
..+..+-+...+++.+-..+..|. ..+. .||.++|+....--+|.. .... +.+| ++...++
T Consensus 151 ~~~~~~~~~~~~~~~GQ~ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~KTa~Ls~~~~-~~~ga~lag~~~~ 229 (362)
T 1yhl_A 151 DLLCLFQKVDYATAVGQMYDVTSMCDSNKLDPEVAQPMTTDFAEFTPAIYKRIVKYKTTFYTYLLP-LVMGLFVSEAAAS 229 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTBCGGGCCTTSCCCBCSSCTTCSHHHHHHHHHHHTHHHHTHHH-HHHHHHHTTCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccCCHHHHHHHHHhcCcHHHHHHH-HHHHHHHcCCCCH
Confidence 356666777889999999999997 3222 589999998777655554 2211 1111 1221233
Q ss_pred HHHhhhcCchHHHHHHHHHHHHhccccc
Q 040006 100 EIFEWEMSNPKIIIAAETIFRFLDDIAG 127 (129)
Q Consensus 100 e~~~~~~~~p~i~~~~~~i~RL~nDi~s 127 (129)
+..+-+ -++-+..++...+.||+-.
T Consensus 230 ~~~~~l---~~~g~~lG~aFQi~DD~lD 254 (362)
T 1yhl_A 230 VEMNLV---ERVAHLIGEYFQVQDDVMD 254 (362)
T ss_dssp SCHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHh
Confidence 334333 3578899999999999743
No 39
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori}
Probab=61.29 E-value=52 Score=25.07 Aligned_cols=82 Identities=9% Similarity=0.027 Sum_probs=54.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHhhhhhhhchhHHHHHHHHh--cCCCCChHHHhhhcCchHHHHHH
Q 040006 38 YSIQYAIRSFQELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIGFLPIAVASFIF--MGDIASREIFEWEMSNPKIIIAA 115 (129)
Q Consensus 38 ~~~~~~~~~~~~l~~ayl~EakW~~~~~iPt~eEYm~~~~~s~g~~~~~~~s~~~--~g~~~~~e~~~~~~~~p~i~~~~ 115 (129)
..+..+-+....++.+-..+..|.. +..||.++|++...--+|...- +.+-+| ++.. +.+.+ -++-+..
T Consensus 122 ~~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~~~~~y~~~i~~KTa~L~~-~~~~~ga~lag~-~~~~l------~~~g~~l 192 (315)
T 3tc1_A 122 LIAQALSNAVLRLSRGEIEDVFVGE-CFNSDKQKYWRILEDKTAHFIE-ASLKSMAILLNK-DAKIY------ADFGLNF 192 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT-SCCCCHHHHHHHHHHHTHHHHH-HHHHHHHHHTTS-CHHHH------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC-CCCCCHHHHHHHHhcchHHHHH-HHHHHHHHHcCC-CHHHH------HHHHHHH
Confidence 3455666778889999999999965 4578999999876655554432 222222 1221 22222 3578899
Q ss_pred HHHHHHhcccccC
Q 040006 116 ETIFRFLDDIAGH 128 (129)
Q Consensus 116 ~~i~RL~nDi~s~ 128 (129)
++...+.||+..+
T Consensus 193 G~aFQI~DD~ld~ 205 (315)
T 3tc1_A 193 GMAFQIIDDLLDI 205 (315)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcc
Confidence 9999999998653
No 40
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A*
Probab=59.03 E-value=63 Score=25.31 Aligned_cols=78 Identities=14% Similarity=0.049 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCHHHHHhhhhhhhchhHHHHHHHHh--cCCCCChHHHhhhcCchHHHHHHHHHHHHh
Q 040006 45 RSFQELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIGFLPIAVASFIF--MGDIASREIFEWEMSNPKIIIAAETIFRFL 122 (129)
Q Consensus 45 ~~~~~l~~ayl~EakW~~~~~iPt~eEYm~~~~~s~g~~~~~~~s~~~--~g~~~~~e~~~~~~~~p~i~~~~~~i~RL~ 122 (129)
....+++.+-+.+..|..+ ..||.++|++...--+|...+...+.+| ++. .+++..+-+ -.+-+..++...+.
T Consensus 182 ~~~~~~~~GQ~lDl~~~~~-~~~s~~~y~~ii~~KTa~L~~~~~~~~Ga~lag-a~~~~~~~l---~~~G~~lG~AFQI~ 256 (380)
T 3lk5_A 182 GMRTEVIGGQLLDIYLESH-ANESVELADSVNRFKTAAYTIARPLHLGASIAG-GSPQLIDAL---LHYGHDIGIAFQLR 256 (380)
T ss_dssp HHHHHHHHHHHHHHHHHHT-TCCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTT-CCHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHhhchHHHHHHHHHHHHHHcC-CCHHHHHHH---HHHHHHHHHHHHHH
Confidence 3345778888888888764 3689999998766666554211222222 122 345555544 45788999999999
Q ss_pred ccccc
Q 040006 123 DDIAG 127 (129)
Q Consensus 123 nDi~s 127 (129)
||+-.
T Consensus 257 DDiLd 261 (380)
T 3lk5_A 257 DDLLG 261 (380)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99753
No 41
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=56.22 E-value=44 Score=25.80 Aligned_cols=73 Identities=11% Similarity=-0.029 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHhcCCCCCCHHHHHhhhhhhhchhHHHHHHHHh--cCCCCChHHHhhhcCchHHHHHHHHHHHHhccc
Q 040006 48 QELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIGFLPIAVASFIF--MGDIASREIFEWEMSNPKIIIAAETIFRFLDDI 125 (129)
Q Consensus 48 ~~l~~ayl~EakW~~~~~iPt~eEYm~~~~~s~g~~~~~~~s~~~--~g~~~~~e~~~~~~~~p~i~~~~~~i~RL~nDi 125 (129)
..++.+-..+..|..+ .+|.++|++...--+|...-. .+.+| ++. .+++..+-+ -++-+..++...+.||+
T Consensus 192 ~~~~~GQ~lDl~~~~~--~~~~~~y~~i~~~KTa~L~~~-a~~~Ga~lag-a~~~~~~~l---~~~g~~lGlAFQI~DDi 264 (335)
T 2h8o_A 192 GGMAGGQALDLAAEKK--APDEDGIITLQAMKTGALLRF-ACEAGAIIAG-SNQAERQRL---RLFGEKIGLSFQLADDL 264 (335)
T ss_dssp TSHHHHHHHHHHHHHS--CCCHHHHHHHHHHHTHHHHHH-HHHHHHHHHT-CCHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccCC--CCCHHHHHHHHHhchHHHHHH-HHHHHHHHhC-CCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 5678888888888764 789999998777666654322 22222 122 355555554 35788899999999997
Q ss_pred cc
Q 040006 126 AG 127 (129)
Q Consensus 126 ~s 127 (129)
-.
T Consensus 265 LD 266 (335)
T 2h8o_A 265 LD 266 (335)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 42
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=52.54 E-value=49 Score=24.67 Aligned_cols=72 Identities=13% Similarity=0.095 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHhcCCCCCCHHHHHhhhhhhhchhHHHHHHHHh--cCCCCChHHHhhhcCchHHHHHHHHHHHHhccc
Q 040006 48 QELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIGFLPIAVASFIF--MGDIASREIFEWEMSNPKIIIAAETIFRFLDDI 125 (129)
Q Consensus 48 ~~l~~ayl~EakW~~~~~iPt~eEYm~~~~~s~g~~~~~~~s~~~--~g~~~~~e~~~~~~~~p~i~~~~~~i~RL~nDi 125 (129)
..++.+-..+..|..+ .||.++|+....--+|.-.. +.+-+| ++. .+++..+-+ -++-+..++...+.||.
T Consensus 149 ~~~~~GQ~lDl~~~~~--~~t~~~y~~~i~~KTa~L~~-~a~~lGailag-a~~~~~~~l---~~~G~~lG~aFQI~DD~ 221 (274)
T 3kra_B 149 EGMISGLHREEEIVDG--NTSLDFIEYVCKKKYGEMHA-CGAACGAILGG-AAEEEIQKL---RNFGLYQGTLRGMMEMK 221 (274)
T ss_dssp TTHHHHHHHHTTCCTT--SSCHHHHHHHHHHHTHHHHH-HHHHHHHHHTT-CCHHHHHHH---HHHHHHHHHHHHHHHHT
T ss_pred HHHHHhHHHHHhccCC--CCCHHHHHHHHHHHHHHHHH-HHHHHHHHHcC-CCHHHHHHH---HHHHHHHHHHHHHHHhh
Confidence 3467777778888643 78999999865544444432 222333 233 355555554 45788999999999996
Q ss_pred c
Q 040006 126 A 126 (129)
Q Consensus 126 ~ 126 (129)
.
T Consensus 222 ~ 222 (274)
T 3kra_B 222 N 222 (274)
T ss_dssp T
T ss_pred c
Confidence 3
No 43
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=51.31 E-value=66 Score=24.25 Aligned_cols=74 Identities=16% Similarity=0.094 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCHHHHHhhhhhhhchhHHHHHHHHh--cCCCCChHHHhhhcCchHHHHHHHHHHHHhcc
Q 040006 47 FQELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIGFLPIAVASFIF--MGDIASREIFEWEMSNPKIIIAAETIFRFLDD 124 (129)
Q Consensus 47 ~~~l~~ayl~EakW~~~~~iPt~eEYm~~~~~s~g~~~~~~~s~~~--~g~~~~~e~~~~~~~~p~i~~~~~~i~RL~nD 124 (129)
...++.+-..+..|.. ..||.++|...-.--+|...-.+ +.+| ++. .+++..+-+ -++-+..++...+.||
T Consensus 144 ~~~~~~GQ~lDl~~~~--~~~~~~~y~~i~~~KTg~L~~~a-~~~ga~lag-a~~~~~~~l---~~~g~~lGlaFQI~DD 216 (291)
T 3npk_A 144 LNGMVIGQAIDCFFED--KRLSLNELEFLHTHKTARLIAAA-LKMGCEICE-LNNEESNQI---YKLGLKLGLIFQINDD 216 (291)
T ss_dssp TTTHHHHHHHHHHTTT--SCCCHHHHHHHHHHHTHHHHHHH-HHHHHHHTT-CCHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC--CCCCHHHHHHHHHcccHHHHHHH-HHHHHHHcC-CCHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 5667788888888853 47899999987654444432222 2222 122 345555444 4588899999999999
Q ss_pred ccc
Q 040006 125 IAG 127 (129)
Q Consensus 125 i~s 127 (129)
+..
T Consensus 217 iLD 219 (291)
T 3npk_A 217 IID 219 (291)
T ss_dssp HHH
T ss_pred HHh
Confidence 753
No 44
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=50.96 E-value=56 Score=24.58 Aligned_cols=73 Identities=16% Similarity=0.090 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHhcCCCCCCHHHHHhhhhhhhchhHHHHHHHHh--c-CCCCChHHHhhhcCchHHHHHHHHHHHHhcc
Q 040006 48 QELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIGFLPIAVASFIF--M-GDIASREIFEWEMSNPKIIIAAETIFRFLDD 124 (129)
Q Consensus 48 ~~l~~ayl~EakW~~~~~iPt~eEYm~~~~~s~g~~~~~~~s~~~--~-g~~~~~e~~~~~~~~p~i~~~~~~i~RL~nD 124 (129)
..++.+-..+..|..+ .+|.++|+....--+|...- ..+.+| + +. .+++..+-+ -++-+..++...+.||
T Consensus 152 ~~~~~GQ~~dl~~~~~--~~~~~~y~~i~~~KTa~L~~-~~~~~ga~l~ag-~~~~~~~~l---~~~g~~lG~aFQi~DD 224 (299)
T 1rqj_A 152 AGMCGGQALDLDAEGK--HVPLDALERIHRHKTGALIR-AAVRLGALSAGD-KGRRALPVL---DKYAESIGLAFQVQDD 224 (299)
T ss_dssp TTHHHHHHHHHHTTTT--CCCHHHHHHHHHHHTHHHHH-HHHHHHHHTTTH-HHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHhccCC--CCCHHHHHHHHHhhhHHHHH-HHHHHHHHHhCC-CCHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 4678888888888643 78999999987555554422 222222 2 21 344555444 4578899999999999
Q ss_pred ccc
Q 040006 125 IAG 127 (129)
Q Consensus 125 i~s 127 (129)
+..
T Consensus 225 ~lD 227 (299)
T 1rqj_A 225 ILD 227 (299)
T ss_dssp HHH
T ss_pred HHh
Confidence 743
No 45
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=49.70 E-value=82 Score=23.84 Aligned_cols=73 Identities=15% Similarity=0.145 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHhcCCCCCCHHHHHhhhhhhhchhHHHHHHHHh--cCCCCChHHHhhhcCchHHHHHHHHHHHHhccc
Q 040006 48 QELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIGFLPIAVASFIF--MGDIASREIFEWEMSNPKIIIAAETIFRFLDDI 125 (129)
Q Consensus 48 ~~l~~ayl~EakW~~~~~iPt~eEYm~~~~~s~g~~~~~~~s~~~--~g~~~~~e~~~~~~~~p~i~~~~~~i~RL~nDi 125 (129)
..++.+-..+..|.. ..||.++|.+...--+|.-.- ..+.+| ++. .+++..+-+ -++-+..++...+.||+
T Consensus 156 ~~~~~GQ~lDl~~~~--~~~t~~~y~~i~~~KTg~L~~-~~~~~ga~lag-a~~~~~~~l---~~~g~~lGlaFQI~DDi 228 (302)
T 3p8l_A 156 QGMVSGQMGDIEGEK--VSLTLEELAAVHEKKTGALIE-FALIAGGVLAN-QTEEVIGLL---TQFAHHYGLAFQIRDDL 228 (302)
T ss_dssp TTHHHHHHHHHHTTT--SCCCHHHHHHHHHHHTHHHHH-HHHHHHHHHTT-CCHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccC--CCCCHHHHHHHHHcCcHHHHH-HHHHHHHHHcC-CCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 457778788888854 378999999875444444322 222222 222 355555554 45788999999999998
Q ss_pred cc
Q 040006 126 AG 127 (129)
Q Consensus 126 ~s 127 (129)
..
T Consensus 229 lD 230 (302)
T 3p8l_A 229 LD 230 (302)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 46
>3mav_A Farnesyl pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase, isoprene biosynthesis; 2.10A {Plasmodium vivax} PDB: 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=49.32 E-value=76 Score=24.83 Aligned_cols=86 Identities=12% Similarity=0.194 Sum_probs=51.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCC-----------------------CCCCHHHHHhhhhhhhchhH---HHHHHHHh
Q 040006 39 SIQYAIRSFQELVMKYFCEAKWLNEG-----------------------YVPSMDEYKSVSLRSIGFLP---IAVASFIF 92 (129)
Q Consensus 39 ~~~~~~~~~~~l~~ayl~EakW~~~~-----------------------~iPt~eEYm~~~~~s~g~~~---~~~~s~~~ 92 (129)
.+.-+.+...+++.+-..+..|..+. ..+|+++|++.-.-=+|... .+....+.
T Consensus 179 ~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~t~~~Y~~ii~~KTa~L~~~~~~~~ga~~ 258 (395)
T 3mav_A 179 VIATFRDATLKTIIGQHLDTNIFSDKYSDAHREIDVNNINVPEQPVIDINMINFGVYKNIVIHKTAYYSFFLPIVCGMLL 258 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSHHHHCC-CCCCSSCSSSCCCCCCCGGGCSHHHHHHHHHHHTHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHhhhcccccchhcccccccCCHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 34555666677888887777775432 24689999987665444331 11222232
Q ss_pred cCCCCChHHHhhhcCchHHHHHHHHHHHHhccccc
Q 040006 93 MGDIASREIFEWEMSNPKIIIAAETIFRFLDDIAG 127 (129)
Q Consensus 93 ~g~~~~~e~~~~~~~~p~i~~~~~~i~RL~nDi~s 127 (129)
.|-...++..+-+ -++-+..++...+.||+-.
T Consensus 259 ag~~~d~~~~~~l---~~~g~~lG~aFQI~DDiLD 290 (395)
T 3mav_A 259 AGIAVDNLIYKKI---EDISMLMGEYFQIHDDYLD 290 (395)
T ss_dssp TTCCTTCTHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred cCCcchhHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 3333334444444 3578889999999999743
No 47
>2her_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structural genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* 2q58_A*
Probab=47.35 E-value=97 Score=24.19 Aligned_cols=84 Identities=7% Similarity=0.010 Sum_probs=53.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhcCCCCCCH-HHHHhhhhhhhchh-HHHH--HHHHhcCCCCChHH--HhhhcCchHH
Q 040006 38 YSIQYAIRSFQELVMKYFCEAKWLNEGYVPSM-DEYKSVSLRSIGFL-PIAV--ASFIFMGDIASREI--FEWEMSNPKI 111 (129)
Q Consensus 38 ~~~~~~~~~~~~l~~ayl~EakW~~~~~iPt~-eEYm~~~~~s~g~~-~~~~--~s~~~~g~~~~~e~--~~~~~~~p~i 111 (129)
..+..+-+...+++.+-+.+..|..++..+.+ ++|++...--+|.. .... ...+.-|. +++. .+-+ -++
T Consensus 168 ~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~~~y~~ii~~KTa~Lsf~~~~~lGa~lag~--~~~~~~~~~l---~~~ 242 (368)
T 2her_A 168 KIQKIYNESIFFTVLGQHLDLSYFDLSKADKISERYFSMVEMKTSRYTFYMPVFFGLTLSEI--QVSSAQLNLI---EAI 242 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSCCCSSCSSHHHHHHHHHHHHTHHHHTHHHHHHHHHHSCC--CCCCSSTTTH---HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHccchHHHHHHHHHHHHHHcCC--ChhHHHHHHH---HHH
Confidence 34566777788999999999999776634444 99988766555554 1111 11222232 2222 3332 457
Q ss_pred HHHHHHHHHHhcccc
Q 040006 112 IIAAETIFRFLDDIA 126 (129)
Q Consensus 112 ~~~~~~i~RL~nDi~ 126 (129)
-+..++...+.||+-
T Consensus 243 g~~lG~aFQI~DD~L 257 (368)
T 2her_A 243 LYKLGEFYQVHNDVS 257 (368)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 889999999999974
No 48
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=45.92 E-value=97 Score=23.57 Aligned_cols=72 Identities=15% Similarity=0.071 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHhcCCCCCCHHHHHhhhhhhhchhHHHHHHHHh--cCCCCChHHHhhhcCchHHHHHHHHHHHHhccc
Q 040006 48 QELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIGFLPIAVASFIF--MGDIASREIFEWEMSNPKIIIAAETIFRFLDDI 125 (129)
Q Consensus 48 ~~l~~ayl~EakW~~~~~iPt~eEYm~~~~~s~g~~~~~~~s~~~--~g~~~~~e~~~~~~~~p~i~~~~~~i~RL~nDi 125 (129)
..++.+-..+..|.. ..||.++|...-.--+|.-.- +.+.+| ++. .+++..+-+ -++-+..++...+.||+
T Consensus 155 ~~m~~GQ~lDl~~~~--~~~t~~~y~~i~~~KTg~L~~-~a~~~ga~lag-a~~~~~~~l---~~~g~~lGlaFQI~DDi 227 (309)
T 3pde_A 155 SGMVAGQAKDIQSEH--VNLPLSQLRVLHKEKTGALLH-YAVQAGLILGQ-APEAQWPAY---LQFADAFGLAFQIYDDI 227 (309)
T ss_dssp TTHHHHHHHHHHTTT--CCCCHHHHHHHHHHHTHHHHH-HHHHHHHHHTT-CCGGGHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHccC--CCCCHHHHHHHHHhccHHHHH-HHHHHHHHHcC-CCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 456777788888853 368999999875544444322 222222 222 344444444 35788899999999997
Q ss_pred c
Q 040006 126 A 126 (129)
Q Consensus 126 ~ 126 (129)
.
T Consensus 228 L 228 (309)
T 3pde_A 228 L 228 (309)
T ss_dssp H
T ss_pred H
Confidence 4
No 49
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=45.13 E-value=65 Score=24.53 Aligned_cols=73 Identities=12% Similarity=0.151 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCHHHHHhhhhhhhchhHHHHHHHHh--cCCCCChHHH-hhhcCchHHHHHHHHHHHHhc
Q 040006 47 FQELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIGFLPIAVASFIF--MGDIASREIF-EWEMSNPKIIIAAETIFRFLD 123 (129)
Q Consensus 47 ~~~l~~ayl~EakW~~~~~iPt~eEYm~~~~~s~g~~~~~~~s~~~--~g~~~~~e~~-~~~~~~p~i~~~~~~i~RL~n 123 (129)
...++.+-..+..|. +..||.++|+..-.--+|...-.+ +.+| ++. .+++.. +-+ -++-+..++...+.|
T Consensus 158 ~~~m~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L~~~a-~~lga~lag-a~~~~~~~~l---~~~g~~lGlaFQI~D 230 (311)
T 3llw_A 158 IKGMILGQALDCYFE--NTPLNLEQLTFLHEHKTAKLISAS-LIMGLVASG-IKDEELFKWL---QAFGLKMGLCFQVLD 230 (311)
T ss_dssp TTTHHHHHHHHHHTT--TSCCCHHHHHHHHHHHTHHHHHHH-HHHHHHHHC-CCCHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHhc--CCCCCHHHHHHHHHHhHHHHHHHH-HHHHHHHcC-CCHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 356778888888885 567899999987654444432222 2222 122 234444 444 357889999999999
Q ss_pred ccc
Q 040006 124 DIA 126 (129)
Q Consensus 124 Di~ 126 (129)
|+-
T Consensus 231 DiL 233 (311)
T 3llw_A 231 DII 233 (311)
T ss_dssp HHH
T ss_pred HHH
Confidence 974
No 50
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=44.10 E-value=1e+02 Score=23.31 Aligned_cols=73 Identities=12% Similarity=0.000 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHhhhhhhhchhHHHHHHHHh--cCCCCChHHHhhhcCchHHHHHHHHHHHHhcccc
Q 040006 49 ELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIGFLPIAVASFIF--MGDIASREIFEWEMSNPKIIIAAETIFRFLDDIA 126 (129)
Q Consensus 49 ~l~~ayl~EakW~~~~~iPt~eEYm~~~~~s~g~~~~~~~s~~~--~g~~~~~e~~~~~~~~p~i~~~~~~i~RL~nDi~ 126 (129)
.++.+-..+..|..+ .||.++|+..-.--+|.-.- ..+.+| ++...+++..+-+ -++-+..++...+.||+-
T Consensus 153 ~~~~GQ~lDl~~~~~--~~s~~~y~~i~~~KTg~L~~-~~~~~ga~lag~~~~~~~~~l---~~~g~~lGlaFQI~DDil 226 (304)
T 3lsn_A 153 GMVGGQAIDLGSVGL--KLDQQALEYMHRHKTGALIE-ASVILGALASGRAEKGELKAL---QTYAQAIGLAFQVQDDIL 226 (304)
T ss_dssp THHHHHHHHHHTTTC--CCCHHHHHHHHHHHTHHHHH-HHHHHHHHHTTCCCHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHhHhHHHHHHccCC--CCCHHHHHHHHHhhhHHHHH-HHHHHHHHHcCCCCHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 377888888888654 48999999875544444322 222222 2332255555554 357888999999999974
Q ss_pred c
Q 040006 127 G 127 (129)
Q Consensus 127 s 127 (129)
.
T Consensus 227 D 227 (304)
T 3lsn_A 227 D 227 (304)
T ss_dssp H
T ss_pred h
Confidence 3
No 51
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=43.03 E-value=1.1e+02 Score=23.36 Aligned_cols=73 Identities=15% Similarity=0.055 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHhhhhhhhchhHHHHHHHHh--cCCCCChHHHhhhcCchHHHHHHHHHHHHhcccc
Q 040006 49 ELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIGFLPIAVASFIF--MGDIASREIFEWEMSNPKIIIAAETIFRFLDDIA 126 (129)
Q Consensus 49 ~l~~ayl~EakW~~~~~iPt~eEYm~~~~~s~g~~~~~~~s~~~--~g~~~~~e~~~~~~~~p~i~~~~~~i~RL~nDi~ 126 (129)
.++.+-..+..|.. ..||.++|+....--+|.-.- ..+-+| ++...+++..+-+ -++-+..++...+.||+.
T Consensus 152 ~m~~GQ~lDl~~~~--~~~t~~~y~~i~~~KTg~L~~-~a~~~Ga~lag~a~~~~~~~l---~~~g~~lGlAFQI~DDiL 225 (317)
T 4f62_A 152 GMITGQMIDLSSEN--KNISLAELEQMHVHKTGALIK-ASVRMGALSTGQVKPEQLAKL---DAYAHAIGLAFQVQDDII 225 (317)
T ss_dssp THHHHHHHHHHTSS--SCCCHHHHHHHHHHHTHHHHH-HHHHHHHHTTTCCCHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHHhHHHHHhccC--CCCCHHHHHHHHHhchHHHHH-HHHHHHHHHcCCCCHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 46778888888863 458999999876544444322 222222 2332455555554 357889999999999985
Q ss_pred c
Q 040006 127 G 127 (129)
Q Consensus 127 s 127 (129)
.
T Consensus 226 D 226 (317)
T 4f62_A 226 D 226 (317)
T ss_dssp H
T ss_pred h
Confidence 4
No 52
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=42.53 E-value=1.1e+02 Score=23.36 Aligned_cols=74 Identities=14% Similarity=0.082 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHhcCCCCCCHHHHHhhhhhhhchhHHHHHHHHh--cCCCCChHHHhhhcCchHHHHHHHHHHHHhccc
Q 040006 48 QELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIGFLPIAVASFIF--MGDIASREIFEWEMSNPKIIIAAETIFRFLDDI 125 (129)
Q Consensus 48 ~~l~~ayl~EakW~~~~~iPt~eEYm~~~~~s~g~~~~~~~s~~~--~g~~~~~e~~~~~~~~p~i~~~~~~i~RL~nDi 125 (129)
..++.+-..+..|... .||.++|+..-.--+|.-.. ..+-+| ++...+++..+-+ -++-+..++...+.||+
T Consensus 158 ~~m~~GQ~lDl~~~~~--~~t~~~y~~i~~~KTg~L~~-~a~~~Ga~lag~a~~~~~~~l---~~~g~~lGlAFQI~DDi 231 (324)
T 3ts7_A 158 AGMVGGQAIDLASVGK--KLDLPGLENMHIRKTGALIR-ASVRLACLARPGLPAEQFDRL---DHYAKCIGLAFQIQDDI 231 (324)
T ss_dssp TTHHHHHHHHHHTTTC--CCCHHHHHHHHHHHTHHHHH-HHHHHHHTTSTTCCHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHccCC--CCCHHHHHHHHHhhHHHHHH-HHHHHHHHHcCCCCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 4678888888888653 78999999876555554432 222333 2332456666554 35788999999999997
Q ss_pred cc
Q 040006 126 AG 127 (129)
Q Consensus 126 ~s 127 (129)
-.
T Consensus 232 LD 233 (324)
T 3ts7_A 232 LD 233 (324)
T ss_dssp HH
T ss_pred Hh
Confidence 53
No 53
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=41.92 E-value=99 Score=23.33 Aligned_cols=74 Identities=16% Similarity=0.117 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHhcCCCCCCHHHHHhhhhhhhchhHHHHHHHHh--cCCCCChHHHhhhcCchHHHHHHHHHHHHhccc
Q 040006 48 QELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIGFLPIAVASFIF--MGDIASREIFEWEMSNPKIIIAAETIFRFLDDI 125 (129)
Q Consensus 48 ~~l~~ayl~EakW~~~~~iPt~eEYm~~~~~s~g~~~~~~~s~~~--~g~~~~~e~~~~~~~~p~i~~~~~~i~RL~nDi 125 (129)
..++.+-..+..|. +..||.++|++...--+|...- ..+.+| ++...+++..+-+ -++-+..++...+.||+
T Consensus 158 ~~~~~GQ~lDl~~~--~~~~s~~~y~~i~~~KTa~L~~-~~~~~ga~lag~~~~~~~~~l---~~~g~~lG~aFQI~DDi 231 (302)
T 3p8r_A 158 QGMCLGQALDLAAE--NRLISLEELETIHRNKTGALMR-CAIRLGALAAGEKGRAMLPHL---DRYAEAVGLAFQVQDDI 231 (302)
T ss_dssp TTHHHHHHHHHHTT--TSCCCHHHHHHHHHHHTHHHHH-HHHHHHHHTTTHHHHTTHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHcc--CCCCCHHHHHHHhccCcHHHHH-HHHHHHHHHcCCCCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 46788888888886 3578999999876544444322 222232 2221233334333 35788899999999997
Q ss_pred cc
Q 040006 126 AG 127 (129)
Q Consensus 126 ~s 127 (129)
..
T Consensus 232 lD 233 (302)
T 3p8r_A 232 LD 233 (302)
T ss_dssp HH
T ss_pred Hh
Confidence 53
No 54
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=41.72 E-value=1.1e+02 Score=23.17 Aligned_cols=76 Identities=14% Similarity=0.101 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHhcCCCCCCHHHHHhhhhhhhchhHHHHHHHHhcCCC-CChHHHhhhcCchHHHHHHHHHHHHhcccc
Q 040006 48 QELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIGFLPIAVASFIFMGDI-ASREIFEWEMSNPKIIIAAETIFRFLDDIA 126 (129)
Q Consensus 48 ~~l~~ayl~EakW~~~~~iPt~eEYm~~~~~s~g~~~~~~~s~~~~g~~-~~~e~~~~~~~~p~i~~~~~~i~RL~nDi~ 126 (129)
..++.+-..+..|.. +..||.++|+....--+|.-.-.++-...++.. .+++..+-+ -++-+..++...+.||+-
T Consensus 158 ~~m~~GQ~lDl~~~~-~~~~t~~~y~~i~~~KTg~L~~~a~~~a~lag~~a~~~~~~~l---~~~g~~lGlaFQI~DDil 233 (313)
T 3lom_A 158 SGMVSGQSLDLSELA-KSSVTEEQLREIHLLKTGKLILACFEMVLAAQHEVSEQIKSAL---RTYGKHIGLVFQMQDDYL 233 (313)
T ss_dssp TTHHHHHHHHHHTTT-SSCCCHHHHHHHHHHHTHHHHHHHHHHHHTTCSSCCHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHccC-CCCCCHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCCHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 467788888888854 337899999987654444332222222223332 566666655 357889999999999974
Q ss_pred c
Q 040006 127 G 127 (129)
Q Consensus 127 s 127 (129)
.
T Consensus 234 D 234 (313)
T 3lom_A 234 D 234 (313)
T ss_dssp H
T ss_pred h
Confidence 3
No 55
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=40.86 E-value=38 Score=19.35 Aligned_cols=47 Identities=17% Similarity=0.190 Sum_probs=30.8
Q ss_pred cccCcCChhHHHHHHHHHH-------HHHHHHHHHHhhcCcchHHHHHHHHHHHH
Q 040006 4 GHIDALPEYMKFIFKTLIG-------VYSEAEEELSKERRSYSIQYAIRSFQELV 51 (129)
Q Consensus 4 ~~~~~Lpeymk~~f~~l~~-------~~~e~~~~~~~~~~~~~~~~~~~~~~~l~ 51 (129)
.+++.||+.-+-++...|- ++.||++.+....+ .+..++.++.+.+-
T Consensus 6 ~~l~~L~~~er~il~l~~~l~~~~~~s~~eIA~~l~is~~-tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 6 KALSKLSEREAMVLKMRKGLIDGREHTLEEVGAYFGVTRE-RIRQIENKALRKLK 59 (73)
T ss_dssp SSTTTSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHH-HHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHhcccCCCCCHHHHHHHHCCCHH-HHHHHHHHHHHHHH
Confidence 4788999998888877772 78888876544333 44445555555443
No 56
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=37.25 E-value=40 Score=20.82 Aligned_cols=21 Identities=14% Similarity=0.075 Sum_probs=16.9
Q ss_pred CCCCCCHHHHHhhhhhhhchh
Q 040006 63 EGYVPSMDEYKSVSLRSIGFL 83 (129)
Q Consensus 63 ~~~iPt~eEYm~~~~~s~g~~ 83 (129)
.-..|+-+||...+.++.-+-
T Consensus 38 ~~~KPdr~Ef~~iak~t~iG~ 58 (80)
T 2ww9_B 38 KCKKPDLKEYTKIVKAVGIGF 58 (80)
T ss_dssp SCCCCCHHHHHHHHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHH
Confidence 467999999999999776443
No 57
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=36.58 E-value=53 Score=20.60 Aligned_cols=46 Identities=11% Similarity=0.141 Sum_probs=30.7
Q ss_pred cccCcCChhHHHHHHHHH-------HHHHHHHHHHHhhcCcchHHHHHHHHHHH
Q 040006 4 GHIDALPEYMKFIFKTLI-------GVYSEAEEELSKERRSYSIQYAIRSFQEL 50 (129)
Q Consensus 4 ~~~~~Lpeymk~~f~~l~-------~~~~e~~~~~~~~~~~~~~~~~~~~~~~l 50 (129)
.+++.||+--+-++..-| -++.||+..+....+ .+.....++.+.+
T Consensus 15 ~aL~~Lp~reR~Vi~Lry~l~~~e~~s~~EIA~~lgiS~~-tVr~~~~rAlkkL 67 (99)
T 3t72_q 15 DVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRE-RIRQIEAKALRKL 67 (99)
T ss_pred HHHHcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCcCHH-HHHHHHHHHHHHH
Confidence 467899999888888777 378999876544333 4445555555443
No 58
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=34.69 E-value=18 Score=22.03 Aligned_cols=21 Identities=24% Similarity=0.113 Sum_probs=16.4
Q ss_pred CCCCCCHHHHHhhhhhhhchh
Q 040006 63 EGYVPSMDEYKSVSLRSIGFL 83 (129)
Q Consensus 63 ~~~iPt~eEYm~~~~~s~g~~ 83 (129)
.-..|+-+||...+.++.-+-
T Consensus 25 ~~~KPdr~EF~~iak~~~iG~ 45 (74)
T 1rh5_B 25 VLKKPTKDEYLAVAKVTALGI 45 (74)
T ss_dssp SEECCCHHHHHHHHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHH
Confidence 356999999999998775433
No 59
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=33.50 E-value=43 Score=19.99 Aligned_cols=46 Identities=13% Similarity=0.240 Sum_probs=29.4
Q ss_pred cccCcCChhHHHHHHHHHH-------HHHHHHHHHHhhcCcchHHHHHHHHHHH
Q 040006 4 GHIDALPEYMKFIFKTLIG-------VYSEAEEELSKERRSYSIQYAIRSFQEL 50 (129)
Q Consensus 4 ~~~~~Lpeymk~~f~~l~~-------~~~e~~~~~~~~~~~~~~~~~~~~~~~l 50 (129)
.+++.||+--+-++...|- ++.||+..+....+ .+..++.++.+.+
T Consensus 14 ~~l~~L~~~er~vl~l~~~l~~~~~~s~~EIA~~lgis~~-tV~~~~~ra~~kL 66 (87)
T 1tty_A 14 KVLKTLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRE-RIRQIEVKALRKL 66 (87)
T ss_dssp HHHTTSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHH-HHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHccCCCCCCCHHHHHHHHCCCHH-HHHHHHHHHHHHH
Confidence 4678999998888877762 78898876544333 3444445554433
No 60
>2hza_A Nickel-responsive regulator; nickel-binding, ribbon-helix-helix, transcription factor, ME binding protein; HET: 3CM; 2.10A {Escherichia coli} SCOP: a.43.1.3 d.58.18.4 PDB: 1q5v_A* 2hzv_A 3od2_A*
Probab=32.89 E-value=95 Score=20.40 Aligned_cols=35 Identities=0% Similarity=0.001 Sum_probs=19.9
Q ss_pred HHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHHHhc
Q 040006 24 YSEAEEELSKERRSYSIQYAIRSFQELVMKYFCEAKWLN 62 (129)
Q Consensus 24 ~~e~~~~~~~~~~~~~~~~~~~~~~~l~~ayl~EakW~~ 62 (129)
.++++..+.+.|=.++-.+ .++.++.|+.+-+|..
T Consensus 13 l~~lD~~v~~~~y~sRSe~----Ir~air~~l~~~~~~~ 47 (133)
T 2hza_A 13 LETLDSLSQRRGYNNRSEA----IRDILRSALAQEATQQ 47 (133)
T ss_dssp HHHHHHHHHHTTCCSHHHH----HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCCCCHHHH----HHHHHHHHHHHhhhhc
Confidence 4555554444441245544 4556667777888954
No 61
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=32.84 E-value=11 Score=22.20 Aligned_cols=19 Identities=16% Similarity=-0.048 Sum_probs=15.5
Q ss_pred CCCCCHHHHHhhhhhhhch
Q 040006 64 GYVPSMDEYKSVSLRSIGF 82 (129)
Q Consensus 64 ~~iPt~eEYm~~~~~s~g~ 82 (129)
-..|+-+||...+.++.-+
T Consensus 22 ~~KPd~~Ef~~iak~~~iG 40 (61)
T 3mp7_B 22 TKKPNWATYKRAAKITGLG 40 (61)
T ss_dssp SCCCCTTHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHH
Confidence 5699999999999876543
No 62
>1x9b_A Hypothetical membrane protein TA0354_69_121; alpha protein, structural genomics, protein structure initiative, PSI; NMR {Thermoplasma acidophilum} SCOP: a.10.2.1
Probab=31.02 E-value=70 Score=17.97 Aligned_cols=29 Identities=17% Similarity=0.267 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHhhcCcch--HHHHHHHHH
Q 040006 20 LIGVYSEAEEELSKERRSYS--IQYAIRSFQ 48 (129)
Q Consensus 20 l~~~~~e~~~~~~~~~~~~~--~~~~~~~~~ 48 (129)
+.+-.+|+|+-..+-|++|. +.-.|+.|+
T Consensus 21 Fv~nL~ELE~is~rlg~~Y~~~LeeaK~kWk 51 (53)
T 1x9b_A 21 FVRNLNELEALAVRLGKSYRIQLDQAKEKWK 51 (53)
T ss_dssp HHHHHHHHHHHHHHHCSHHHHHHHHHHHHHC
T ss_pred HHHhHHHHHHHHHHHchHHHHHHHHHHHhhc
Confidence 34556777776777788754 445566663
No 63
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=31.00 E-value=73 Score=18.97 Aligned_cols=46 Identities=7% Similarity=0.019 Sum_probs=28.7
Q ss_pred cccCcCChhHHHHHHHHH-H--HHHHHHHHHHhhcCcchHHHHHHHHHHH
Q 040006 4 GHIDALPEYMKFIFKTLI-G--VYSEAEEELSKERRSYSIQYAIRSFQEL 50 (129)
Q Consensus 4 ~~~~~Lpeymk~~f~~l~-~--~~~e~~~~~~~~~~~~~~~~~~~~~~~l 50 (129)
.+++.||+--+-++...| . ++.||+..+....+ .+..++.++.+.+
T Consensus 33 ~~l~~L~~~~r~vl~l~~~~g~s~~eIA~~lgis~~-tV~~~l~ra~~~L 81 (92)
T 3hug_A 33 DALAQLSAEHRAVIQRSYYRGWSTAQIATDLGIAEG-TVKSRLHYAVRAL 81 (92)
T ss_dssp HHHHTSCHHHHHHHHHHHTSCCCHHHHHHHHTSCHH-HHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHH-HHHHHHHHHHHHH
Confidence 356789988777776533 2 68888876554433 4455556655544
No 64
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=30.75 E-value=32 Score=19.42 Aligned_cols=43 Identities=9% Similarity=0.110 Sum_probs=27.9
Q ss_pred ccCcCChhHHHHHHHHH-------HHHHHHHHHHHhhcCcchHHHHHHHHH
Q 040006 5 HIDALPEYMKFIFKTLI-------GVYSEAEEELSKERRSYSIQYAIRSFQ 48 (129)
Q Consensus 5 ~~~~Lpeymk~~f~~l~-------~~~~e~~~~~~~~~~~~~~~~~~~~~~ 48 (129)
+++.||+.-+-++...+ -++.||++.+....+ .+..++.++.+
T Consensus 2 ~l~~L~~~er~il~l~~~l~~~~g~s~~eIA~~lgis~~-tV~~~~~ra~~ 51 (68)
T 2p7v_B 2 VLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRE-RIRQIEAKALR 51 (68)
T ss_dssp CSCCCCHHHHHHHHHHTTTTSSSCCCHHHHHHHHTCCHH-HHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHccCCCCCCCHHHHHHHHCcCHH-HHHHHHHHHHH
Confidence 57889999888888887 378888876544332 33444444443
No 65
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=30.63 E-value=1.8e+02 Score=22.20 Aligned_cols=74 Identities=15% Similarity=0.052 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHhcCCCCCCHHHHHhhhhhhhchhHHHHHHHHh--cCCCCChHHHhhhcCchHHHHHHHHHHHHhccc
Q 040006 48 QELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIGFLPIAVASFIF--MGDIASREIFEWEMSNPKIIIAAETIFRFLDDI 125 (129)
Q Consensus 48 ~~l~~ayl~EakW~~~~~iPt~eEYm~~~~~s~g~~~~~~~s~~~--~g~~~~~e~~~~~~~~p~i~~~~~~i~RL~nDi 125 (129)
..++.+-..+..|.. +..||.++|+..-.--+|.-.- +.+-+| ++. .+++..+-+ -++-+..++...+.||+
T Consensus 180 ~~m~~GQ~lDl~~~~-~~~~t~~~y~~i~~~KTa~L~~-~a~~~Ga~lag-a~~~~~~~l---~~~g~~lGlAFQI~DDi 253 (324)
T 3uca_A 180 DGMIGGQIVDIINED-KEEISLKELDYMHLKKTGELIK-ASIMSGAVLAE-ASEGDIKKL---EGFGYKLGLAFQIKDDI 253 (324)
T ss_dssp TTHHHHHHHHHHTSS-CSSCCHHHHHHHHHHHTHHHHH-HHHHHHHHHTT-CCHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHcCC-CCCCCHHHHHHHHhcchHHHHH-HHHHHHHHHcC-CCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 457788888888854 3368999999875444444322 222222 222 355555554 45788899999999997
Q ss_pred cc
Q 040006 126 AG 127 (129)
Q Consensus 126 ~s 127 (129)
..
T Consensus 254 LD 255 (324)
T 3uca_A 254 LD 255 (324)
T ss_dssp HH
T ss_pred Hh
Confidence 53
No 66
>2kw6_A Cyclin-dependent kinase 2-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=30.12 E-value=88 Score=18.47 Aligned_cols=44 Identities=16% Similarity=0.297 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHhh--cCcchHHHHHHHH---HHHHHHHHHHHH
Q 040006 16 IFKTLIGVYSEAEEELSKE--RRSYSIQYAIRSF---QELVMKYFCEAK 59 (129)
Q Consensus 16 ~f~~l~~~~~e~~~~~~~~--~~~~~~~~~~~~~---~~l~~ayl~Eak 59 (129)
-|..|+.++.||.+++... |.....+-+++-. +.+++..+.|++
T Consensus 12 kY~~LL~VIeEmgkdIrpTYaGsk~~~ERLkR~I~hAr~LVrECl~E~e 60 (65)
T 2kw6_A 12 KYAELLAIIEELGKEIRPTYAGSKSAMERLKRGIIHARGLVRECLAETE 60 (65)
T ss_dssp HHHHHHHHHHHHTTTHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcccchhhccCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3778899999998776665 3323444554433 568888888876
No 67
>2ihi_A Pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase; 2.00A {Plasmodium vivax sai-1} PDB: 3mav_A 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=28.26 E-value=2.2e+02 Score=22.35 Aligned_cols=85 Identities=11% Similarity=0.165 Sum_probs=53.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHH-Hh-----------------c-CCC----CCCHHHHHhhhhhhhchh-H--HHHHHHH
Q 040006 38 YSIQYAIRSFQELVMKYFCEAK-WL-----------------N-EGY----VPSMDEYKSVSLRSIGFL-P--IAVASFI 91 (129)
Q Consensus 38 ~~~~~~~~~~~~l~~ayl~Eak-W~-----------------~-~~~----iPt~eEYm~~~~~s~g~~-~--~~~~s~~ 91 (129)
..+..+.+....++.+-..+.. |. . ++. .||.++|+..-.--+|.. . .+....+
T Consensus 178 ~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~~~~~~~~~~~~e~~~dl~~~t~~~y~~i~~~KTa~Ls~~~~~~~ga~ 257 (395)
T 2ihi_A 178 DVIATFRDATLKTIIGQHLDTNIFSDKYSDAHREIDVNNINVPEQPVIDINMINFGVYKNIVIHKTAYYSFFLPIVCGML 257 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSHHHHCSSSCCCTTCCCCC-CCCCCGGGCSHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHhhhhcccccccccccccccccccccccccCCCHHHHHHHHHccchHHHHHHHHHHHHH
Confidence 3556677778889999999984 41 1 333 689999998766666553 1 1112222
Q ss_pred hcCCCCChHH--HhhhcCchHHHHHHHHHHHHhccccc
Q 040006 92 FMGDIASREI--FEWEMSNPKIIIAAETIFRFLDDIAG 127 (129)
Q Consensus 92 ~~g~~~~~e~--~~~~~~~p~i~~~~~~i~RL~nDi~s 127 (129)
.-| .+.+. .+-+ -++-+..++...+.||+-.
T Consensus 258 lag--~~~~~~~~~~l---~~~g~~lG~aFQI~DD~LD 290 (395)
T 2ihi_A 258 LAG--IAVDNLIYKKI---EDISMLMGEYFQIHDDYLD 290 (395)
T ss_dssp HTT--CCTTCTHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HcC--CChhhHHHHHH---HHHHHHHHHHHHHHHHHHh
Confidence 223 22232 3333 3578899999999999754
No 68
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=26.32 E-value=97 Score=17.70 Aligned_cols=36 Identities=22% Similarity=0.161 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHH
Q 040006 18 KTLIGVYSEAEEELSKERRSYSIQYAIRSFQELVMK 53 (129)
Q Consensus 18 ~~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~a 53 (129)
.++-.-+.-+|..+..-|+..++.-+++.|.++-+.
T Consensus 5 kaleekvkaleekvkalggggrieelkkkweelkkk 40 (67)
T 1lq7_A 5 KALEEKVKALEEKVKALGGGGRIEELKKKWEELKKK 40 (67)
T ss_dssp HHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHH
Confidence 345555667777777777778899999999887653
No 69
>2wwb_B SEC61gamma, protein transport protein SEC61 subunit gamma; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=25.98 E-value=39 Score=20.14 Aligned_cols=20 Identities=10% Similarity=0.185 Sum_probs=16.3
Q ss_pred CCCCCHHHHHhhhhhhhchh
Q 040006 64 GYVPSMDEYKSVSLRSIGFL 83 (129)
Q Consensus 64 ~~iPt~eEYm~~~~~s~g~~ 83 (129)
-..|+-+||.+.+.++.-+-
T Consensus 25 ~~KPdr~Ef~~iak~~~iG~ 44 (68)
T 2wwb_B 25 CTKPDRKEFQKIAMATAIGF 44 (68)
T ss_dssp CCCCCTHHHHHHHHHSSHHH
T ss_pred hcCCCHHHHHHHHHHHHHHH
Confidence 56899999999999776444
No 70
>1ash_A Hemoglobin (OXY); oxygen storage; HET: HEM; 2.15A {Ascaris suum} SCOP: a.1.1.2
Probab=22.88 E-value=1.2e+02 Score=20.40 Aligned_cols=42 Identities=12% Similarity=0.084 Sum_probs=28.1
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHH
Q 040006 9 LPEYMKFIFKTLIGVYSEAEEELSKERRSYSIQYAIRSFQELVMKYFCEAK 59 (129)
Q Consensus 9 Lpeymk~~f~~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~ayl~Eak 59 (129)
-|++.+.+..+|+.++.+.- ...+..+++|..+.+.+-.|+.
T Consensus 105 ~~e~f~~v~~~Ll~~L~~~l---------~~t~~~~~AW~~l~~~~~~~~~ 146 (150)
T 1ash_A 105 PPEVWTDFWKLFEEYLGKKT---------TLDEPTKQAWHEIGREFAKEIN 146 (150)
T ss_dssp CHHHHHHHHHHHHHHHHHHS---------CCCHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHc---------CCCHHHHHHHHHHHHHHHHHHH
Confidence 46677777777776666541 2345667888888888777754
No 71
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=22.20 E-value=1.1e+02 Score=16.71 Aligned_cols=45 Identities=11% Similarity=-0.079 Sum_probs=27.4
Q ss_pred cccCcCChhHHHHHHHHHH---HHHHHHHHHHhhcCcchHHHHHHHHHH
Q 040006 4 GHIDALPEYMKFIFKTLIG---VYSEAEEELSKERRSYSIQYAIRSFQE 49 (129)
Q Consensus 4 ~~~~~Lpeymk~~f~~l~~---~~~e~~~~~~~~~~~~~~~~~~~~~~~ 49 (129)
.+++.||+.-+-++...+- ++.||+..+....+ .+..++.++.+.
T Consensus 11 ~~l~~L~~~~r~il~l~~~~g~s~~eIA~~lgis~~-tv~~~~~ra~~~ 58 (70)
T 2o8x_A 11 TMIADLTTDQREALLLTQLLGLSYADAAAVCGCPVG-TIRSRVARARDA 58 (70)
T ss_dssp TTTTSSCHHHHHHHHHHHTSCCCHHHHHHHHTSCHH-HHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHH-HHHHHHHHHHHH
Confidence 4678899988888776542 67788766544333 334444444443
Done!