BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040008
(227 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1K88|A Chain A, Crystal Structure Of Procaspase-7
pdb|1K88|B Chain B, Crystal Structure Of Procaspase-7
Length = 253
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/107 (21%), Positives = 46/107 (42%), Gaps = 14/107 (13%)
Query: 17 DRLVSAPYKLNFRDDKESVVVCRKKLSKEEVVQSRNAVEKDY-----YFQMYYDDLLIWG 71
DR+ + Y +NF + +++ K K + RN +KD F+ D++++
Sbjct: 3 DRVPTYQYNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYN 62
Query: 72 ---------FIGKVDKEWKTHPSEYKYFLYKHIQFDILYNKDRVIEI 109
+ K +E T+ + + L H + +++Y KD V I
Sbjct: 63 DCSCAKMQDLLKKASEEDHTNAACFACILLSHGEENVIYGKDGVTPI 109
>pdb|1K86|A Chain A, Crystal Structure Of Caspase-7
pdb|1K86|B Chain B, Crystal Structure Of Caspase-7
Length = 253
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/107 (21%), Positives = 46/107 (42%), Gaps = 14/107 (13%)
Query: 17 DRLVSAPYKLNFRDDKESVVVCRKKLSKEEVVQSRNAVEKDY-----YFQMYYDDLLIWG 71
DR+ + Y +NF + +++ K K + RN +KD F+ D++++
Sbjct: 3 DRVPTYQYNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYN 62
Query: 72 ---------FIGKVDKEWKTHPSEYKYFLYKHIQFDILYNKDRVIEI 109
+ K +E T+ + + L H + +++Y KD V I
Sbjct: 63 DCSCAKMQDLLKKASEEDHTNAACFACILLSHGEENVIYGKDGVTPI 109
>pdb|1SHJ|A Chain A, Caspase-7 In Complex With Dica Allosteric Inhibitor
pdb|1SHJ|B Chain B, Caspase-7 In Complex With Dica Allosteric Inhibitor
Length = 262
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/107 (21%), Positives = 46/107 (42%), Gaps = 14/107 (13%)
Query: 17 DRLVSAPYKLNFRDDKESVVVCRKKLSKEEVVQSRNAVEKDY-----YFQMYYDDLLIWG 71
DR+ + Y +NF + +++ K K + RN +KD F+ D++++
Sbjct: 4 DRVPTYQYNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYN 63
Query: 72 ---------FIGKVDKEWKTHPSEYKYFLYKHIQFDILYNKDRVIEI 109
+ K +E T+ + + L H + +++Y KD V I
Sbjct: 64 DCSCAKMQDLLKKASEEDHTNAACFACILLSHGEENVIYGKDGVTPI 110
>pdb|3H1P|A Chain A, Mature Caspase-7 I213a With Devd-Cho Inhibitor Bound To
Active Site
pdb|3H1P|B Chain B, Mature Caspase-7 I213a With Devd-Cho Inhibitor Bound To
Active Site
Length = 260
Score = 32.3 bits (72), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/107 (21%), Positives = 46/107 (42%), Gaps = 14/107 (13%)
Query: 17 DRLVSAPYKLNFRDDKESVVVCRKKLSKEEVVQSRNAVEKDY-----YFQMYYDDLLIWG 71
DR+ + Y +NF + +++ K K + RN +KD F+ D++++
Sbjct: 4 DRVPTYQYNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYN 63
Query: 72 ---------FIGKVDKEWKTHPSEYKYFLYKHIQFDILYNKDRVIEI 109
+ K +E T+ + + L H + +++Y KD V I
Sbjct: 64 DCSCAKMQDLLKKASEEDHTNAACFACILLSHGEENVIYGKDGVTPI 110
>pdb|1GQF|A Chain A, Crystal Structure Of Human Procaspase-7
pdb|1GQF|B Chain B, Crystal Structure Of Human Procaspase-7
Length = 265
Score = 32.0 bits (71), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/107 (21%), Positives = 46/107 (42%), Gaps = 14/107 (13%)
Query: 17 DRLVSAPYKLNFRDDKESVVVCRKKLSKEEVVQSRNAVEKDY-----YFQMYYDDLLIWG 71
DR+ + Y +NF + +++ K K + RN +KD F+ D++++
Sbjct: 7 DRVPTYQYNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYN 66
Query: 72 ---------FIGKVDKEWKTHPSEYKYFLYKHIQFDILYNKDRVIEI 109
+ K +E T+ + + L H + +++Y KD V I
Sbjct: 67 DCSCAKMQDLLKKASEEDHTNAACFACILLSHGEENVIYGKDGVTPI 113
>pdb|1I4O|A Chain A, Crystal Structure Of The XiapCASPASE-7 Complex
pdb|1I4O|B Chain B, Crystal Structure Of The XiapCASPASE-7 Complex
Length = 280
Score = 32.0 bits (71), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/107 (21%), Positives = 46/107 (42%), Gaps = 14/107 (13%)
Query: 17 DRLVSAPYKLNFRDDKESVVVCRKKLSKEEVVQSRNAVEKDY-----YFQMYYDDLLIWG 71
DR+ + Y +NF + +++ K K + RN +KD F+ D++++
Sbjct: 30 DRVPTYQYNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYN 89
Query: 72 ---------FIGKVDKEWKTHPSEYKYFLYKHIQFDILYNKDRVIEI 109
+ K +E T+ + + L H + +++Y KD V I
Sbjct: 90 DCSCAKMQDLLKKASEEDHTNAACFACILLSHGEENVIYGKDGVTPI 136
>pdb|3R5K|A Chain A, A Designed Redox-Controlled Caspase-7
pdb|3R5K|B Chain B, A Designed Redox-Controlled Caspase-7
Length = 312
Score = 32.0 bits (71), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/107 (21%), Positives = 46/107 (42%), Gaps = 14/107 (13%)
Query: 17 DRLVSAPYKLNFRDDKESVVVCRKKLSKEEVVQSRNAVEKDY-----YFQMYYDDLLIWG 71
DR+ + Y +NF + +++ K K + RN +KD F+ D++++
Sbjct: 53 DRVPTYQYNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYN 112
Query: 72 ---------FIGKVDKEWKTHPSEYKYFLYKHIQFDILYNKDRVIEI 109
+ K +E T+ + + L H + +++Y KD V I
Sbjct: 113 DCSCAKMQDLLKKASEEDHTNAACFACILLSHGEENVIYGKDGVTPI 159
>pdb|1I51|A Chain A, Crystal Structure Of Caspase-7 Complexed With Xiap
pdb|1I51|C Chain C, Crystal Structure Of Caspase-7 Complexed With Xiap
Length = 148
Score = 32.0 bits (71), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/107 (21%), Positives = 46/107 (42%), Gaps = 14/107 (13%)
Query: 17 DRLVSAPYKLNFRDDKESVVVCRKKLSKEEVVQSRNAVEKDY-----YFQMYYDDLLIWG 71
DR+ + Y +NF + +++ K K + RN +KD F+ D++++
Sbjct: 3 DRVPTYQYNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYN 62
Query: 72 ---------FIGKVDKEWKTHPSEYKYFLYKHIQFDILYNKDRVIEI 109
+ K +E T+ + + L H + +++Y KD V I
Sbjct: 63 DCSCAKMQDLLKKASEEDHTNAACFACILLSHGEENVIYGKDGVTPI 109
>pdb|1KMC|A Chain A, Crystal Structure Of The Caspase-7 XIAP-Bir2 Complex
pdb|1KMC|B Chain B, Crystal Structure Of The Caspase-7 XIAP-Bir2 Complex
Length = 303
Score = 32.0 bits (71), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/107 (21%), Positives = 46/107 (42%), Gaps = 14/107 (13%)
Query: 17 DRLVSAPYKLNFRDDKESVVVCRKKLSKEEVVQSRNAVEKDY-----YFQMYYDDLLIWG 71
DR+ + Y +NF + +++ K K + RN +KD F+ D++++
Sbjct: 53 DRVPTYQYNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYN 112
Query: 72 ---------FIGKVDKEWKTHPSEYKYFLYKHIQFDILYNKDRVIEI 109
+ K +E T+ + + L H + +++Y KD V I
Sbjct: 113 DCSCAKMQDLLKKASEEDHTNAACFACILLSHGEENVIYGKDGVTPI 159
>pdb|4FDL|A Chain A, Crystal Structure Of Caspase-7
pdb|4FDL|B Chain B, Crystal Structure Of Caspase-7
Length = 305
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/107 (21%), Positives = 46/107 (42%), Gaps = 14/107 (13%)
Query: 17 DRLVSAPYKLNFRDDKESVVVCRKKLSKEEVVQSRNAVEKDY-----YFQMYYDDLLIWG 71
DR+ + Y +NF + +++ K K + RN +KD F+ D++++
Sbjct: 55 DRVPTYQYNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYN 114
Query: 72 ---------FIGKVDKEWKTHPSEYKYFLYKHIQFDILYNKDRVIEI 109
+ K +E T+ + + L H + +++Y KD V I
Sbjct: 115 DCSCAKMQDLLKKASEEDHTNAACFACILLSHGEENVIYGKDGVTPI 161
>pdb|1F1J|A Chain A, Crystal Structure Of Caspase-7 In Complex With
Acetyl-asp-glu-val-asp- Cho
pdb|1F1J|B Chain B, Crystal Structure Of Caspase-7 In Complex With
Acetyl-asp-glu-val-asp- Cho
Length = 305
Score = 32.0 bits (71), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/107 (21%), Positives = 46/107 (42%), Gaps = 14/107 (13%)
Query: 17 DRLVSAPYKLNFRDDKESVVVCRKKLSKEEVVQSRNAVEKDY-----YFQMYYDDLLIWG 71
DR+ + Y +NF + +++ K K + RN +KD F+ D++++
Sbjct: 55 DRVPTYQYNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYN 114
Query: 72 ---------FIGKVDKEWKTHPSEYKYFLYKHIQFDILYNKDRVIEI 109
+ K +E T+ + + L H + +++Y KD V I
Sbjct: 115 DCSCAKMQDLLKKASEEDHTNAACFACILLSHGEENVIYGKDGVTPI 161
>pdb|2QL5|A Chain A, Crystal Structure Of Caspase-7 With Inhibitor Ac-Dmqd-Cho
pdb|2QL5|C Chain C, Crystal Structure Of Caspase-7 With Inhibitor Ac-Dmqd-Cho
pdb|2QL7|A Chain A, Crystal Structure Of Caspase-7 With Inhibitor Ac-Iepd-Cho
pdb|2QL7|C Chain C, Crystal Structure Of Caspase-7 With Inhibitor Ac-Iepd-Cho
pdb|2QL9|A Chain A, Crystal Structure Of Caspase-7 With Inhibitor Ac-Dqmd-Cho
pdb|2QL9|C Chain C, Crystal Structure Of Caspase-7 With Inhibitor Ac-Dqmd-Cho
pdb|2QLB|A Chain A, Crystal Structure Of Caspase-7 With Inhibitor Ac-Esmd-Cho
pdb|2QLB|C Chain C, Crystal Structure Of Caspase-7 With Inhibitor Ac-Esmd-Cho
pdb|2QLF|A Chain A, Crystal Structure Of Caspase-7 With Inhibitor Ac-dnld-cho
pdb|2QLF|C Chain C, Crystal Structure Of Caspase-7 With Inhibitor Ac-dnld-cho
pdb|2QLJ|A Chain A, Crystal Structure Of Caspase-7 With Inhibitor Ac-Wehd-Cho
pdb|2QLJ|C Chain C, Crystal Structure Of Caspase-7 With Inhibitor Ac-Wehd-Cho
pdb|3EDR|A Chain A, The Crystal Structure Of Caspase-7 In Complex With
Acetyl-ldesd-cho
pdb|3EDR|C Chain C, The Crystal Structure Of Caspase-7 In Complex With
Acetyl-ldesd-cho
pdb|3IBC|A Chain A, Crystal Structure Of Caspase-7 Incomplex With Acetyl-Yvad-
Cho
pdb|3IBC|C Chain C, Crystal Structure Of Caspase-7 Incomplex With Acetyl-Yvad-
Cho
pdb|3IBF|A Chain A, Crystal Structure Of Unliganded Caspase-7
pdb|3IBF|C Chain C, Crystal Structure Of Unliganded Caspase-7
Length = 173
Score = 32.0 bits (71), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/107 (21%), Positives = 46/107 (42%), Gaps = 14/107 (13%)
Query: 17 DRLVSAPYKLNFRDDKESVVVCRKKLSKEEVVQSRNAVEKDY-----YFQMYYDDLLIWG 71
DR+ + Y +NF + +++ K K + RN +KD F+ D++++
Sbjct: 30 DRVPTYQYNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYN 89
Query: 72 ---------FIGKVDKEWKTHPSEYKYFLYKHIQFDILYNKDRVIEI 109
+ K +E T+ + + L H + +++Y KD V I
Sbjct: 90 DCSCAKMQDLLKKASEEDHTNAACFACILLSHGEENVIYGKDGVTPI 136
>pdb|4FEA|A Chain A, Crystal Structure Of Caspase-7 In Complex With Allosteric
Inhibitor
pdb|4FEA|B Chain B, Crystal Structure Of Caspase-7 In Complex With Allosteric
Inhibitor
Length = 247
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/100 (21%), Positives = 42/100 (42%), Gaps = 14/100 (14%)
Query: 24 YKLNFRDDKESVVVCRKKLSKEEVVQSRNAVEKDY-----YFQMYYDDLLIWG------- 71
Y +NF + +++ K K + RN +KD F+ D++++
Sbjct: 4 YNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYNDCSCAKM 63
Query: 72 --FIGKVDKEWKTHPSEYKYFLYKHIQFDILYNKDRVIEI 109
+ K +E T+ + + L H + +++Y KD V I
Sbjct: 64 QDLLKKASEEDHTNAACFACILLSHGEENVIYGKDGVTPI 103
>pdb|1SHL|A Chain A, Caspase-7 In Complex With Fica Allosteric Inhibitor
pdb|1SHL|B Chain B, Caspase-7 In Complex With Fica Allosteric Inhibitor
Length = 245
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/100 (21%), Positives = 42/100 (42%), Gaps = 14/100 (14%)
Query: 24 YKLNFRDDKESVVVCRKKLSKEEVVQSRNAVEKDY-----YFQMYYDDLLIWG------- 71
Y +NF + +++ K K + RN +KD F+ D++++
Sbjct: 4 YNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYNDCSCAKM 63
Query: 72 --FIGKVDKEWKTHPSEYKYFLYKHIQFDILYNKDRVIEI 109
+ K +E T+ + + L H + +++Y KD V I
Sbjct: 64 QDLLKKASEEDHTNAACFACILLSHGEENVIYGKDGVTPI 103
>pdb|1XTD|A Chain A, Structural Analysis Of Leishmania Mexicana Eukaryotic
Initiation Factor 5a
Length = 174
Score = 26.9 bits (58), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 17 DRLVSAPYKLNFRDDKESVVVCRKKLSKEEVVQSRNAVEK 56
D ++ K F KE +VV E+V+Q++NA EK
Sbjct: 135 DAALATQIKEQFDSGKEVLVVVVSAXGTEQVLQTKNAAEK 174
>pdb|1X6O|A Chain A, Structural Analysis Of Leishmania Braziliensis Eukaryotic
Initiation Factor 5a
Length = 174
Score = 26.9 bits (58), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 17 DRLVSAPYKLNFRDDKESVVVCRKKLSKEEVVQSRNAVEK 56
D ++ K F K+ +VV + E+V+Q++NA EK
Sbjct: 135 DPALATQIKEQFDSGKDVLVVVVSAMGTEQVLQTKNAAEK 174
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,320,909
Number of Sequences: 62578
Number of extensions: 237618
Number of successful extensions: 675
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 658
Number of HSP's gapped (non-prelim): 21
length of query: 227
length of database: 14,973,337
effective HSP length: 95
effective length of query: 132
effective length of database: 9,028,427
effective search space: 1191752364
effective search space used: 1191752364
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)