Query 040008
Match_columns 227
No_of_seqs 153 out of 593
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 04:11:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040008.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040008hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1278 Endosomal membrane pro 100.0 2.2E-71 4.8E-76 517.0 19.5 224 3-227 72-519 (628)
2 KOG1277 Endosomal membrane pro 100.0 6E-65 1.3E-69 465.0 17.9 222 2-227 71-484 (593)
3 PF02990 EMP70: Endomembrane p 100.0 5.4E-64 1.2E-68 478.3 20.6 224 3-227 17-454 (521)
4 PF12823 DUF3817: Domain of un 71.7 1.8 3.9E-05 32.4 0.8 26 187-212 62-87 (92)
5 PF01544 CorA: CorA-like Mg2+ 67.7 6.5 0.00014 34.0 3.6 34 133-166 224-257 (292)
6 PRK09546 zntB zinc transporter 65.9 7.8 0.00017 35.0 3.9 26 141-166 262-287 (324)
7 COG0598 CorA Mg2+ and Co2+ tra 55.3 16 0.00034 33.1 3.9 29 138-166 257-285 (322)
8 smart00767 DCD DCD is a plant 51.7 12 0.00026 30.0 2.2 31 22-60 80-110 (132)
9 TIGR00383 corA magnesium Mg(2+ 50.2 18 0.00039 32.2 3.4 28 139-166 254-281 (318)
10 KOG2754 Oligosaccharyltransfer 44.6 4.8 0.0001 37.7 -1.2 34 174-209 392-426 (443)
11 PF10539 Dev_Cell_Death: Devel 41.8 22 0.00047 28.4 2.3 30 23-60 81-110 (130)
12 PF09183 DUF1947: Domain of un 40.2 31 0.00067 24.3 2.6 21 41-61 4-24 (65)
13 PRK11085 magnesium/nickel/coba 39.8 35 0.00076 31.1 3.7 34 133-166 246-279 (316)
14 PRK00523 hypothetical protein; 35.1 22 0.00049 25.5 1.3 20 146-165 4-23 (72)
15 PF03345 DDOST_48kD: Oligosacc 32.8 10 0.00022 36.1 -1.1 34 174-209 371-407 (423)
16 PF07240 Turandot: Stress-indu 31.6 21 0.00045 26.5 0.7 30 41-70 27-56 (85)
17 PF07271 Cytadhesin_P30: Cytad 28.5 1.1E+02 0.0024 27.5 4.7 51 155-211 26-85 (279)
18 COG0099 RpsM Ribosomal protein 27.1 59 0.0013 25.7 2.5 21 41-61 47-67 (121)
19 PF03487 IL13: Interleukin-13; 25.5 23 0.00051 22.5 0.0 19 146-164 1-19 (43)
20 PF05366 Sarcolipin: Sarcolipi 25.4 56 0.0012 19.2 1.6 11 142-152 16-26 (31)
21 KOG2489 Transmembrane protein 22.8 39 0.00085 33.0 1.0 52 140-210 433-484 (592)
22 PF13035 DUF3896: Protein of u 21.6 56 0.0012 22.2 1.2 23 34-56 22-44 (61)
No 1
>KOG1278 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.2e-71 Score=517.00 Aligned_cols=224 Identities=31% Similarity=0.625 Sum_probs=199.5
Q ss_pred ccccccCcCCeeecCeeeeCCeEEEEccccccccccccccCHHHHHHHHHHHHhccEEEEEEeceeeeEEeceec-c---
Q 040008 3 IKEKKEALGKVLNEDRLVSAPYKLNFRDDKESVVVCRKKLSKEEVVQSRNAVEKDYYFQMYYDDLLIWGFIGKVD-K--- 78 (227)
Q Consensus 3 i~~~~e~LGevL~Gdri~~Spy~i~f~~n~~c~~LC~~~lt~~~~~~l~~~I~~~Y~~~~~iDnLPv~~~ig~~~-~--- 78 (227)
++.++|||||+|+|||++||||+++|++|++|+.+|+.++++++++.++++|+++|++||++||||++...-..+ +
T Consensus 72 i~~~~EnLGeVl~GDRi~nSPy~~~m~e~~~C~~lC~~k~~~~~~~~l~~~I~~~Y~v~wivDnlPva~~~~~~~~~~~~ 151 (628)
T KOG1278|consen 72 IKKQSENLGEVLRGDRIENSPYKFKMLENQPCETLCATKLDKEDAKLLKKLIREGYVVNWIVDNLPVATRYERSDDGKVY 151 (628)
T ss_pred cCCcccchhceeccCcccCCCceEecccCCcchhhhcccCCHHHHHHHHHHHhhccEeeeeecCCceeEEEeecCCCceE
Confidence 577999999999999999999999999999999999999999999999999999999999999999876532222 1
Q ss_pred ccCCCC-------CCceEEEeeeEEEEEEEeC-----CeEEEEEeEeCCCc-------------ceec-------CCCCc
Q 040008 79 EWKTHP-------SEYKYFLYKHIQFDILYNK-----DRVIEISPQMDPHS-------------LVDL-------TEDKE 126 (227)
Q Consensus 79 ~~~g~~-------~~~~~~L~NH~~f~I~Yn~-----~rIVg~~v~p~~~~-------------~~~~-------~~~~~ 126 (227)
.+.|++ +.+++|++||++|+|.||. +|||||+|+|.|.+ ++++ +++++
T Consensus 152 y~~GfplG~~~~~~~~~~y~~NHl~~~i~yH~~~~~~~riVgfeV~P~Si~~~~~~~~~~~~~~~c~~~~~~~~~~e~~~ 231 (628)
T KOG1278|consen 152 YGTGFPLGFKGPKDEDKYYLHNHLDFVIRYHRDDNDKYRIVGFEVKPVSIKHEHEKGDSKNSLPTCSIPEKPLELDEGEE 231 (628)
T ss_pred eccCccceeccCCCccceeEeeeEEEEEEEEecCCCceEEEEEEEEeeeeecccCCCcccccCCcccCCCCccccCCCCc
Confidence 123443 4578899999999999997 49999999996542 2222 23455
Q ss_pred eeEEEe--------------------------------------------------------------------------
Q 040008 127 VDVDFI-------------------------------------------------------------------------- 132 (227)
Q Consensus 127 ~~v~ft-------------------------------------------------------------------------- 132 (227)
.++.||
T Consensus 232 ~~i~fTYsV~f~esdi~WasRWD~yL~m~~~qIhWfSIiNSlvIVlfLSgiv~mI~lRtl~rDiarYne~d~~~d~~Ee~ 311 (628)
T KOG1278|consen 232 TEIVFTYSVKFEESDIKWASRWDYYLHMEDVQIHWFSIINSLVIVLFLSGIVAMIMLRTLYRDIARYNELDLDDDAQEES 311 (628)
T ss_pred eEEEEEEEEEEEeccCcchhhHHHHhcCCCCceEEEehhhhHHHHHHHHHHHHHHHHHHHHHhHhhhccccchhhhhhhc
Confidence 668888
Q ss_pred --------------------------------------------------------------------------------
Q 040008 133 -------------------------------------------------------------------------------- 132 (227)
Q Consensus 133 -------------------------------------------------------------------------------- 132 (227)
T Consensus 312 GWKLVhGDVFR~P~~~~lLsv~vGsGvQ~l~M~~vti~fA~lGflSPs~RGsLmT~~~~l~v~~G~~agY~s~rlyk~~~ 391 (628)
T KOG1278|consen 312 GWKLVHGDVFRPPRNSMLLSVLVGSGVQLLGMILVTIFFACLGFLSPSSRGSLMTAMVLLFVFMGFVAGYVSARLYKTFK 391 (628)
T ss_pred ceEEeecccccCCCCCeEEEEEeccChhhhHHHHHHHHHHHhccCCccccccHHHHHHHHHHHHHHhhhhhhhhhHhhhc
Confidence
Q ss_pred ----------------------------------ecCCCchHHHHHHHHHHHHhhhhhhhhhhhhccccCCCCCCCccCC
Q 040008 133 ----------------------------------ATVALPFGTIVVIVLIWTLVTSLLLMLGGIAGKNSKAEFQAPCRTT 178 (227)
Q Consensus 133 ----------------------------------ss~a~pf~t~~~l~~lw~~v~~PL~~~G~~~g~~~~~~~~~P~~~n 178 (227)
||+|+||+|++++++||++||+||+++|+++|+ |++++|+|+|||
T Consensus 392 g~~wk~~~~lta~l~PGivf~~~f~lN~~lW~~~SSgAvPF~T~~~ll~LwF~isVPLsf~G~y~g~-kk~~~e~PvrTN 470 (628)
T KOG1278|consen 392 GREWKRNAILTAFLFPGIVFAIFFVLNFFLWGKHSSGAVPFSTMVALLFLWFGISVPLSFVGGYFGF-KKPAIEHPVRTN 470 (628)
T ss_pred CCcchhhHHhhhhhcchHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHHHhhhhHHHhhHHhhc-cCCCCCCCcccC
Confidence 999999999999999999999999999999999 588899999999
Q ss_pred CCCCCCCCCCCccchhhhhhhcccchhhhhHHHHHHHHHhhhccceeeC
Q 040008 179 KYPREIPSLPWYRSVILHMAMAGFLPFSAIYIELYYIFASVWGHKIYTI 227 (227)
Q Consensus 179 ~ipR~IP~~~~y~~~~~~~~~~G~lpF~~i~iel~~i~~s~W~~~~Yy~ 227 (227)
|||||||+||||+++.+.+++||++|||+|||||+||++|+|.||+|||
T Consensus 471 qIpRqIP~q~~y~~~~~~ili~GilPFg~ifIELfFI~~SiW~~qfYY~ 519 (628)
T KOG1278|consen 471 QIPRQIPEQPWYLNPIPSILIAGILPFGAIFIELFFILSSIWLNQFYYM 519 (628)
T ss_pred CCcccCCCCccccchhhHHHhhcccchHHHHHHHHHHHHHHHhhhHHHH
Confidence 9999999999999999999999999999999999999999999999996
No 2
>KOG1277 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6e-65 Score=465.00 Aligned_cols=222 Identities=54% Similarity=0.961 Sum_probs=202.8
Q ss_pred cccccccCcCCeeecCeeeeCCeEEEEccccccccccccccCHHHHHHHHHHHHhccEEEEEEeceeeeEEeceeccccC
Q 040008 2 VIKEKKEALGKVLNEDRLVSAPYKLNFRDDKESVVVCRKKLSKEEVVQSRNAVEKDYYFQMYYDDLLIWGFIGKVDKEWK 81 (227)
Q Consensus 2 ~i~~~~e~LGevL~Gdri~~Spy~i~f~~n~~c~~LC~~~lt~~~~~~l~~~I~~~Y~~~~~iDnLPv~~~ig~~~~~~~ 81 (227)
.++|++|+|||+|.|||++.|+|+++|+.|++..++|.++|++++++.|++||+++|++||++||||+|+++|+.++++
T Consensus 71 ~i~hk~etLGEvL~G~eL~~s~y~ikF~~~v~~~v~C~~~L~~e~v~~f~~AI~~~Yyfqmy~DdlPIwGfvGe~d~~k- 149 (593)
T KOG1277|consen 71 SISHKHETLGEVLQGDELEFSGYEIKFRDNVEKEVYCEKKLSEEKVKAFRYAIENDYYFQMYIDDLPIWGFVGEVDEDK- 149 (593)
T ss_pred ccchhhhhHHhhhCCceeeecceeeeecccCCceeeehhhcCHHHHHHHHHHHHhhheeeeeecCceeeeEeeeecccc-
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999999987653
Q ss_pred CCCCCceEEEeeeEEEEEEEeCCeEEEEEeEeCCCcceecCCCCcee----EEEe-------------------------
Q 040008 82 THPSEYKYFLYKHIQFDILYNKDRVIEISPQMDPHSLVDLTEDKEVD----VDFI------------------------- 132 (227)
Q Consensus 82 g~~~~~~~~L~NH~~f~I~Yn~~rIVg~~v~p~~~~~~~~~~~~~~~----v~ft------------------------- 132 (227)
.++++++|||||.+|.|+||++|||.++++.++.. ++.++++.+ |.|.
T Consensus 150 -~~~~~ky~L~thk~f~i~yn~drii~vnlt~~~~v--~L~~~~~~~~tYsV~W~~t~v~f~~rfdkyld~~ff~h~IHW 226 (593)
T KOG1277|consen 150 -LDNEGKYYLYTHKKFEIGYNGDRIIDVNLTTHGLV--DLRPDKKLTFTYSVKWKETEVEFEKRFDKYLDPSFFPHRIHW 226 (593)
T ss_pred -CCCCCceEEEEeeeEEEeecCceEEEEEeeecccc--cCCCCCCCceEEEEEeeeccCcHHHHhHhhcccccccceeeh
Confidence 23567999999999999999999999999986543 333222212 2222
Q ss_pred --------------------------------------------------------------------------------
Q 040008 133 -------------------------------------------------------------------------------- 132 (227)
Q Consensus 133 -------------------------------------------------------------------------------- 132 (227)
T Consensus 227 fSIfNSfmmVifLvGlvamILMRtLrnDyarY~~dee~~d~~d~d~~~E~GWK~vHgDVFR~p~~~~Lfsa~lGsG~Qlf 306 (593)
T KOG1277|consen 227 FSIFNSFMMVIFLVGLVAMILMRTLRNDYARYAKDEEALDDMDRDDQEEYGWKQVHGDVFRFPSHPLLFSAVLGSGAQLF 306 (593)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhccccccccccccceeeecccccCCCccHHHHHHhccccchH
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 040008 133 -------------------------------------------------------------------------------- 132 (227)
Q Consensus 133 -------------------------------------------------------------------------------- 132 (227)
T Consensus 307 ~l~~~ii~~Alvg~fy~~rGal~saaI~vYAlTs~i~GY~~gs~Y~r~gG~~Wik~m~lta~Lfp~~~~~t~~~~N~vai 386 (593)
T KOG1277|consen 307 TLVLIIIMLALVGVFYTERGALLSAAIVVYALTSPINGYVSGSFYARLGGRRWIKNMLLTASLFPVPVFGTAFLLNTVAI 386 (593)
T ss_pred HHHHHHHHHHHHhhhhccchHHHHHHHHHHHhcccccccccceeeehhccHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence
Q ss_pred ---ecCCCchHHHHHHHHHHHHhhhhhhhhhhhhccccCCCCCCCccCCCCCCCCCCCCCccchhhhhhhcccchhhhhH
Q 040008 133 ---ATVALPFGTIVVIVLIWTLVTSLLLMLGGIAGKNSKAEFQAPCRTTKYPREIPSLPWYRSVILHMAMAGFLPFSAIY 209 (227)
Q Consensus 133 ---ss~a~pf~t~~~l~~lw~~v~~PL~~~G~~~g~~~~~~~~~P~~~n~ipR~IP~~~~y~~~~~~~~~~G~lpF~~i~ 209 (227)
||+|+||+|+++++++|++|..||+++|+++|+++++++++|||++++||+||++|||+++.+.+++||+|||+|||
T Consensus 387 ~y~at~AlPfgt~v~v~~iw~fv~~PL~~~G~i~GkN~~~~~~~PCR~~~~pR~Ip~~kWy~~~~~~~~~gG~LPFgsIf 466 (593)
T KOG1277|consen 387 AYGATAALPFGTIVVVLLIWLFVISPLTVLGGIAGKNRSGEFDAPCRTKAIPREIPPKKWYRSPLVIMLMGGFLPFGSIF 466 (593)
T ss_pred HhccccccCccchHHHHHHHHHHhchHHHcccccccccccCCCCCcccccCCCCCCCccccccchHHHHhhccCccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhccceeeC
Q 040008 210 IELYYIFASVWGHKIYTI 227 (227)
Q Consensus 210 iel~~i~~s~W~~~~Yy~ 227 (227)
||++|||+|+|.+++||+
T Consensus 467 IEmYfIFtSfW~ykiYyv 484 (593)
T KOG1277|consen 467 IEMYFIFTSFWGYKIYYV 484 (593)
T ss_pred hhHHHHHHHHhhhhHHHH
Confidence 999999999999999985
No 3
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=100.00 E-value=5.4e-64 Score=478.26 Aligned_cols=224 Identities=42% Similarity=0.830 Sum_probs=200.3
Q ss_pred ccccccCcCCeeecCeeeeCCeEEEEccccccccccccccCHHHHHHHHHHHHhccEEEEEEeceeeeEEeceeccc---
Q 040008 3 IKEKKEALGKVLNEDRLVSAPYKLNFRDDKESVVVCRKKLSKEEVVQSRNAVEKDYYFQMYYDDLLIWGFIGKVDKE--- 79 (227)
Q Consensus 3 i~~~~e~LGevL~Gdri~~Spy~i~f~~n~~c~~LC~~~lt~~~~~~l~~~I~~~Y~~~~~iDnLPv~~~ig~~~~~--- 79 (227)
+++++|||||+|+|||+++|||+++|++|++|+.+|+++++++|+++++++|+++|++||+|||||+++..|+.++.
T Consensus 17 ~~~~~~slGevL~Gdr~~~S~y~i~f~~~~~c~~lC~~~l~~~~~~~l~~~I~~~Y~~~~~vD~LP~~~~~~~~~~~~~~ 96 (521)
T PF02990_consen 17 IEHKSESLGEVLRGDRIQNSPYEIKFLQNVTCKVLCKKTLTKEDVKKLKEAIENNYRVEMYVDDLPIAGFIGSVDGCDKG 96 (521)
T ss_pred cccccCCHHHHhccCceecCceEEEEecCcchhhccCccCCHHHHHHHHHHHHHhheeeEEecCceEEEEecccCCccee
Confidence 56789999999999999999999999999999999999999999999999999999999999999999998876541
Q ss_pred -cCCCC----CCceEEEeeeEEEEEEEe----CC-eEEEEEeEeCCCc----------ceecCCCCce-eEEEe------
Q 040008 80 -WKTHP----SEYKYFLYKHIQFDILYN----KD-RVIEISPQMDPHS----------LVDLTEDKEV-DVDFI------ 132 (227)
Q Consensus 80 -~~g~~----~~~~~~L~NH~~f~I~Yn----~~-rIVg~~v~p~~~~----------~~~~~~~~~~-~v~ft------ 132 (227)
..|++ +++++|||||++|+|.|| ++ |||||+|+|.|.+ +.+++++++. +|.||
T Consensus 97 y~~G~~~g~~~~~~~~l~NH~~f~I~Yn~~~~~~~~IVgf~v~p~Si~~~~C~~~~~~~~~l~~~~~~~~i~fTYSV~w~ 176 (521)
T PF02990_consen 97 YPIGFPLGFKDDNKYYLYNHLDFTIRYNQESNGDYRIVGFEVTPRSIDHSTCPGNESSPQELPEDKEADNITFTYSVKWE 176 (521)
T ss_pred cCCCcccCcccCCcceeEeEEEEEEEEECCCCCceEEEEEEEEeccccCccccccCCCCeeccCCCcccEEEEEEEEEEE
Confidence 23433 467899999999999999 34 9999999995543 3344433322 57777
Q ss_pred --------------------------------------------------------------------------------
Q 040008 133 -------------------------------------------------------------------------------- 132 (227)
Q Consensus 133 -------------------------------------------------------------------------------- 132 (227)
T Consensus 177 ~s~~~w~~Rwd~Yl~~~~~~~ihw~SiiNS~iivl~L~~~v~~Il~R~l~~D~~~y~~~~~~~~~~ee~GWKlvhgDVFR 256 (521)
T PF02990_consen 177 ESDVPWASRWDKYLDSMFDSQIHWFSIINSFIIVLFLSGLVAIILLRTLRRDISRYNDEDSEEDDQEESGWKLVHGDVFR 256 (521)
T ss_pred ecCCchhhccccccccccCCceEEEeHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccchhhhhHHHhc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 040008 133 -------------------------------------------------------------------------------- 132 (227)
Q Consensus 133 -------------------------------------------------------------------------------- 132 (227)
T Consensus 257 ~P~~~~lls~lvG~G~Qll~~~~~~~~~a~~g~~~~~~rg~l~t~~i~~y~~~~~iaGy~S~~~yk~~~g~~W~~~~~lt 336 (521)
T PF02990_consen 257 PPKHPMLLSALVGTGIQLLFMALVTLFFAALGFLSPNNRGSLLTAAIILYALTSFIAGYVSARLYKSFGGKKWKKNSILT 336 (521)
T ss_pred CcCCchHHHhHhcchhhhhHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCceeehhhHH
Confidence
Q ss_pred -----------------------ecCCCchHHHHHHHHHHHHhhhhhhhhhhhhccccCCCC-CCCccCCCCCCCCCCCC
Q 040008 133 -----------------------ATVALPFGTIVVIVLIWTLVTSLLLMLGGIAGKNSKAEF-QAPCRTTKYPREIPSLP 188 (227)
Q Consensus 133 -----------------------ss~a~pf~t~~~l~~lw~~v~~PL~~~G~~~g~~~~~~~-~~P~~~n~ipR~IP~~~ 188 (227)
||+|+||+|++.+++||++|++||+++||++|+| +.+. ++|||+|+|||+||+||
T Consensus 337 ~~~~P~~~~~~~~~~n~i~~~~~ss~aipf~t~~~l~~lw~~v~~PL~~lG~~~g~k-~~~~~~~p~~~n~ipR~IP~~~ 415 (521)
T PF02990_consen 337 SLLFPGILFSIFFILNFIAWSYGSSSAIPFGTILFLIALWFFVSIPLTFLGGYFGFK-NPPIDEFPCRTNQIPRQIPPQP 415 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHhhhhhhcchhhhcC-ccccccCCcCCCCCCCcCCCCc
Confidence 9999999999999999999999999999999995 5566 99999999999999999
Q ss_pred CccchhhhhhhcccchhhhhHHHHHHHHHhhhccceeeC
Q 040008 189 WYRSVILHMAMAGFLPFSAIYIELYYIFASVWGHKIYTI 227 (227)
Q Consensus 189 ~y~~~~~~~~~~G~lpF~~i~iel~~i~~s~W~~~~Yy~ 227 (227)
||+++.+.+++||++||++||+||+||++|+|.+|+||+
T Consensus 416 ~y~~~~~~~l~~G~lPF~~i~iEl~~i~~s~W~~~~y~~ 454 (521)
T PF02990_consen 416 WYLSPFFSILIGGILPFGAIFIELYFIFSSLWSNKFYYL 454 (521)
T ss_pred cccCCccceeecchHHHHHHHHHHHHHHHHhhcCcceEE
Confidence 999999999999999999999999999999999999985
No 4
>PF12823 DUF3817: Domain of unknown function (DUF3817); InterPro: IPR023845 This domain is associated with, strictly bacterial integral membrane proteins. It occurs in proteins that on rare occasions are fused to transporter domains such as the major facilitator superfamily domain. Of three invariant residues, two occur as a His-Gly dipeptide in the middle of three predicted transmembrane helices.
Probab=71.66 E-value=1.8 Score=32.40 Aligned_cols=26 Identities=23% Similarity=0.494 Sum_probs=22.5
Q ss_pred CCCccchhhhhhhcccchhhhhHHHH
Q 040008 187 LPWYRSVILHMAMAGFLPFSAIYIEL 212 (227)
Q Consensus 187 ~~~y~~~~~~~~~~G~lpF~~i~iel 212 (227)
+.|-.+.....+++|++||+++++|-
T Consensus 62 ~rW~~~~~~~~llas~iPfg~f~~er 87 (92)
T PF12823_consen 62 YRWSLKRTLLALLASVIPFGTFWFER 87 (92)
T ss_pred cCCChHHHHHHHHHHcccccHHHHHH
Confidence 45877888889999999999999884
No 5
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=67.71 E-value=6.5 Score=33.99 Aligned_cols=34 Identities=21% Similarity=0.265 Sum_probs=27.6
Q ss_pred ecCCCchHHHHHHHHHHHHhhhhhhhhhhhhccc
Q 040008 133 ATVALPFGTIVVIVLIWTLVTSLLLMLGGIAGKN 166 (227)
Q Consensus 133 ss~a~pf~t~~~l~~lw~~v~~PL~~~G~~~g~~ 166 (227)
|..+.--...+..+.++-.|-+||+++.|++|-+
T Consensus 224 ~~~~~~~n~~m~~LT~~t~iflPlt~i~g~fGMN 257 (292)
T PF01544_consen 224 SKLSNRQNRVMKVLTIVTAIFLPLTFITGIFGMN 257 (292)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHHHHHTTSTTS-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 4455556777788899999999999999999986
No 6
>PRK09546 zntB zinc transporter; Reviewed
Probab=65.95 E-value=7.8 Score=34.96 Aligned_cols=26 Identities=19% Similarity=0.193 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhccc
Q 040008 141 TIVVIVLIWTLVTSLLLMLGGIAGKN 166 (227)
Q Consensus 141 t~~~l~~lw~~v~~PL~~~G~~~g~~ 166 (227)
....++.++-.|.+|+|++.|++|-|
T Consensus 262 ~~m~~Ltilt~IflPlT~IaGiyGMN 287 (324)
T PRK09546 262 RRTYTMSLMAMVFLPTTFLTGLFGVN 287 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 33456777778888999999999986
No 7
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=55.26 E-value=16 Score=33.06 Aligned_cols=29 Identities=21% Similarity=0.216 Sum_probs=25.8
Q ss_pred chHHHHHHHHHHHHhhhhhhhhhhhhccc
Q 040008 138 PFGTIVVIVLIWTLVTSLLLMLGGIAGKN 166 (227)
Q Consensus 138 pf~t~~~l~~lw~~v~~PL~~~G~~~g~~ 166 (227)
=-..++.++.+|-.|-+|+|+++|++|-|
T Consensus 257 ~~N~imk~LTi~s~iflPpTlIagiyGMN 285 (322)
T COG0598 257 NQNEIMKILTIVSTIFLPPTLITGFYGMN 285 (322)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHcccccC
Confidence 34667799999999999999999999986
No 8
>smart00767 DCD DCD is a plant specific domain in proteins involved in development and programmed cell death. The domain is shared by several proteins in the Arabidopsis and the rice genomes, which otherwise show a different protein architecture. Biological studies indicate a role of these proteins in phytohormone response, embryo development and programmed cell death by pathogens or ozone.
Probab=51.67 E-value=12 Score=30.00 Aligned_cols=31 Identities=23% Similarity=0.286 Sum_probs=24.3
Q ss_pred CCeEEEEccccccccccccccCHHHHHHHHHHHHhccEE
Q 040008 22 APYKLNFRDDKESVVVCRKKLSKEEVVQSRNAVEKDYYF 60 (227)
Q Consensus 22 Spy~i~f~~n~~c~~LC~~~lt~~~~~~l~~~I~~~Y~~ 60 (227)
=|.+++|+....|..|.+ + .|+.+|.++|..
T Consensus 80 fPaQVrf~i~~~C~PL~E-----~---~f~~aI~~nY~~ 110 (132)
T smart00767 80 FPAQVRFRIRKDCKPLPE-----S---EFRSAILENYDG 110 (132)
T ss_pred cCcEEEEEEeeeecCCCH-----H---HHHHHHHHhCcC
Confidence 367899998888887653 2 399999999965
No 9
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=50.20 E-value=18 Score=32.18 Aligned_cols=28 Identities=25% Similarity=0.392 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHHhhhhhhhhhhhhccc
Q 040008 139 FGTIVVIVLIWTLVTSLLLMLGGIAGKN 166 (227)
Q Consensus 139 f~t~~~l~~lw~~v~~PL~~~G~~~g~~ 166 (227)
...+...+.+|-.|-+|+++++|++|-|
T Consensus 254 ~N~~mk~LTvvt~IflP~t~IaGiyGMN 281 (318)
T TIGR00383 254 MNEIMKILTVVSTIFIPLTFIAGIYGMN 281 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3456688999999999999999999986
No 10
>KOG2754 consensus Oligosaccharyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=44.64 E-value=4.8 Score=37.67 Aligned_cols=34 Identities=47% Similarity=0.804 Sum_probs=25.5
Q ss_pred CccCCCCCCCCCCC-CCccchhhhhhhcccchhhhhH
Q 040008 174 PCRTTKYPREIPSL-PWYRSVILHMAMAGFLPFSAIY 209 (227)
Q Consensus 174 P~~~n~ipR~IP~~-~~y~~~~~~~~~~G~lpF~~i~ 209 (227)
|-.-++-||.||.. |+|.+ +...|+|++-|+.+|
T Consensus 392 pl~h~eYeRfIpsAypYyas--~fs~m~g~~~Fs~vf 426 (443)
T KOG2754|consen 392 PLAHTEYERFIPSAYPYYAS--CFSMMAGFFLFSFVF 426 (443)
T ss_pred ecccccccccccccchHHHH--HHHHHHHHheeeEEE
Confidence 66789999999976 88876 334567787777664
No 11
>PF10539 Dev_Cell_Death: Development and cell death domain; InterPro: IPR013989 The DCD (Development and Cell Death) domain is found in plant proteins involved in development and cell death. The DCD domain is an ~130 amino acid long stretch that contains several mostly invariable motifs. These include a FGLP and a LFL motif at the N terminus and a PAQV and a PLxE motif towards the C terminus of the domain. The DCD domain is present in proteins with different architectures. Some of these proteins contain additional recognizable motifs, like the KELCH repeats or the ParB domain []. Biological studies indicate a role of these proteins in phytohormone response, embryo development and programmed cell death by pathogens or ozone. The predicted secondary structure of the DCD domain is mostly composed of beta strands and confined by an alpha-helix at the N- and at the C terminus []. Proteins known to contain a DCD domain are listed below: Carrot B2 protein. Pea Gda-1 protein. Soybean N-rich protein (NRP).
Probab=41.79 E-value=22 Score=28.43 Aligned_cols=30 Identities=23% Similarity=0.372 Sum_probs=23.3
Q ss_pred CeEEEEccccccccccccccCHHHHHHHHHHHHhccEE
Q 040008 23 PYKLNFRDDKESVVVCRKKLSKEEVVQSRNAVEKDYYF 60 (227)
Q Consensus 23 py~i~f~~n~~c~~LC~~~lt~~~~~~l~~~I~~~Y~~ 60 (227)
|.+++|.....|..|- + +.++.+|+++|+-
T Consensus 81 PAQVrf~i~~~C~PL~-----E---~~fk~aI~~Ny~~ 110 (130)
T PF10539_consen 81 PAQVRFRIRWDCPPLP-----E---SQFKPAIKDNYYD 110 (130)
T ss_pred ceEEEEEEeeeeecCC-----H---HHHHHHHHHhCCC
Confidence 5688888888887654 2 5789999999965
No 12
>PF09183 DUF1947: Domain of unknown function (DUF1947); InterPro: IPR015266 Members of this entry are a set of hypothetical archaeal proteins. Their exact function has not, as yet, been defined. ; PDB: 1Q7H_A.
Probab=40.19 E-value=31 Score=24.29 Aligned_cols=21 Identities=24% Similarity=0.431 Sum_probs=14.3
Q ss_pred ccCHHHHHHHHHHHHhccEEE
Q 040008 41 KLSKEEVVQSRNAVEKDYYFQ 61 (227)
Q Consensus 41 ~lt~~~~~~l~~~I~~~Y~~~ 61 (227)
-++++|.+.+.+.+++-|-..
T Consensus 4 ~LSkKe~k~~~~k~~~~ygId 24 (65)
T PF09183_consen 4 FLSKKEIKEIKEKIKEKYGID 24 (65)
T ss_dssp E--HHHHHHHHHHHHT-TT--
T ss_pred cccHHHHHHHHHHHHHHhCcC
Confidence 378999999999999988543
No 13
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=39.81 E-value=35 Score=31.07 Aligned_cols=34 Identities=15% Similarity=0.158 Sum_probs=28.0
Q ss_pred ecCCCchHHHHHHHHHHHHhhhhhhhhhhhhccc
Q 040008 133 ATVALPFGTIVVIVLIWTLVTSLLLMLGGIAGKN 166 (227)
Q Consensus 133 ss~a~pf~t~~~l~~lw~~v~~PL~~~G~~~g~~ 166 (227)
|-.+.--..+..++.+|-.|-.|+|++.|++|-|
T Consensus 246 ~~i~~~~N~~mk~lTv~s~if~pptliagiyGMN 279 (316)
T PRK11085 246 GFINIEQNRIIKIFSVVSVVFLPPTLVASSYGMN 279 (316)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 3334445677899999999999999999999986
No 14
>PRK00523 hypothetical protein; Provisional
Probab=35.08 E-value=22 Score=25.48 Aligned_cols=20 Identities=30% Similarity=0.368 Sum_probs=14.5
Q ss_pred HHHHHHhhhhhhhhhhhhcc
Q 040008 146 VLIWTLVTSLLLMLGGIAGK 165 (227)
Q Consensus 146 ~~lw~~v~~PL~~~G~~~g~ 165 (227)
+.+|+++.+...++|++.||
T Consensus 4 ~~l~I~l~i~~li~G~~~Gf 23 (72)
T PRK00523 4 IGLALGLGIPLLIVGGIIGY 23 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777775
No 15
>PF03345 DDOST_48kD: Oligosaccharyltransferase 48 kDa subunit beta; InterPro: IPR005013 During N-linked glycosylation of proteins, oligosaccharide chains are assembled on the carrier molecule dolichyl pyrophosphate in the following order: 2 molecules of N-acetylglucosamine (GlcNAc), 9 molecules of mannose, and 3 molecules of glucose. These 14-residue oligosaccharide cores are then transferred to asparagine residues on nascent polypeptide chains in the endoplasmic reticulum (ER). As proteins progress through the Golgi apparatus, the oligosaccharide cores are modified by trimming and extension to generate a diverse array of glycosylated proteins [, ]. The oligosaccharyl transferase complex (OST complex) 2.4.1.119 from EC transfers 14-sugar branched oligosaccharides from dolichyl pyrophosphate to asparagine residues []. The complex contains nine protein subunits: Ost1p, Ost2p, Ost3p, Ost4p, Ost5p, Ost6p, Stt3p, Swp1p, and Wbp1p, all of which are integral membrane proteins of the ER. The OST complex interacts with the Sec61p pore complex [] involved in protein import into the ER. This entry represents subunits OST3 and OST6. OST3 is homologous to OST6 [], and several lines of evidence indicate that they are alternative members of the OST complex. Disruption of both OST3 and OST6 causes severe underglycosylation of soluble and membrane-bound glycoproteins and a defect in the assembly of the complex. Hence, the function of these genes seems to be essential for recruiting a fully active complex necessary for efficient N-glycosylation []. This entry also includes the magnesium transporter protein 1, also known as OST3 homologue B, which might be involved in N-glycosylation through its association with the oligosaccharyl transferase (OST) complex. Wbp1p is the beta subunit of the OST complex, one of the original six subunits purified []. Wbp1 is essential [, ], but conditional mutants have decreased transferase activity [, ]. Wbp1p is homologous to mammalian OST48 [].; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0018279 protein N-linked glycosylation via asparagine, 0005789 endoplasmic reticulum membrane
Probab=32.79 E-value=10 Score=36.12 Aligned_cols=34 Identities=35% Similarity=0.714 Sum_probs=25.4
Q ss_pred CccCCCCCC--CCCCC-CCccchhhhhhhcccchhhhhH
Q 040008 174 PCRTTKYPR--EIPSL-PWYRSVILHMAMAGFLPFSAIY 209 (227)
Q Consensus 174 P~~~n~ipR--~IP~~-~~y~~~~~~~~~~G~lpF~~i~ 209 (227)
|-+-++-|| .|+.. |||.+ ....++|++-|+++|
T Consensus 371 pl~Hdey~Rs~fI~~A~PYyas--~~s~m~gf~lF~~~f 407 (423)
T PF03345_consen 371 PLAHDEYPRSWFITNAYPYYAS--AFSMMIGFFLFVFVF 407 (423)
T ss_pred CCccccCccccccccccHHHHH--HHHHHHHHHhheeeE
Confidence 557799999 99977 99976 345566777777664
No 16
>PF07240 Turandot: Stress-inducible humoral factor Turandot; InterPro: IPR010825 This family consists of several Drosophila species specific Turandot proteins. The Turandot A (TotA) gene encodes a humoral factor, which is secreted from the fat body and accumulates in the body fluids. TotA is strongly induced upon bacterial challenge, as well as by other types of stress such as high temperature, mechanical pressure, dehydration, UV irradiation, and oxidative agents. It is also upregulated during metamorphosis and at high age. Flies that overexpress TotA show prolonged survival and retain normal activity at otherwise lethal temperatures. Although TotA is only induced by severe stress, it responds to a much wider range of stimuli than heat shock genes such as hsp70 or immune genes such as Cecropin A1 [].
Probab=31.58 E-value=21 Score=26.46 Aligned_cols=30 Identities=7% Similarity=-0.047 Sum_probs=25.8
Q ss_pred ccCHHHHHHHHHHHHhccEEEEEEeceeee
Q 040008 41 KLSKEEVVQSRNAVEKDYYFQMYYDDLLIW 70 (227)
Q Consensus 41 ~lt~~~~~~l~~~I~~~Y~~~~~iDnLPv~ 70 (227)
.+++++.+++.+.|++.=..+..|||+|+=
T Consensus 27 ~L~~~~r~~~d~~i~~y~~~~~lVDGvPaQ 56 (85)
T PF07240_consen 27 PLTPQDRQRIDRFIRRYKEENNLVDGVPAQ 56 (85)
T ss_pred CCCHHHHHHHHHHHHHHHHHhhcccCcCCC
Confidence 489999999999998877777799999983
No 17
>PF07271 Cytadhesin_P30: Cytadhesin P30/P32; InterPro: IPR009896 This family consists of several Mycoplasma species specific Cytadhesin P32 and P30 proteins. P30 has been found to be membrane associated and localised on the tip organelle. It is thought that it is important in cytadherence and virulence [].; GO: 0007157 heterophilic cell-cell adhesion, 0009405 pathogenesis, 0016021 integral to membrane
Probab=28.48 E-value=1.1e+02 Score=27.50 Aligned_cols=51 Identities=20% Similarity=0.382 Sum_probs=30.8
Q ss_pred hhhhhhhhhccccCCCCCCCc--------cCCCC-CCCCCCCCCccchhhhhhhcccchhhhhHHH
Q 040008 155 LLLMLGGIAGKNSKAEFQAPC--------RTTKY-PREIPSLPWYRSVILHMAMAGFLPFSAIYIE 211 (227)
Q Consensus 155 PL~~~G~~~g~~~~~~~~~P~--------~~n~i-pR~IP~~~~y~~~~~~~~~~G~lpF~~i~ie 211 (227)
=|.++|..+-- +....|.|- .||+| +|.|-+++|+.-. +||..-|+++.+=
T Consensus 26 ~~~~l~~~~~~-~~~~~e~~~~~v~h~~e~t~~~~~~~i~~~~W~~P~-----v~~~~G~~~v~li 85 (279)
T PF07271_consen 26 ALIVLATLILV-QHNNYESPLNVVLHEEEDTNQIQGRPITEQSWFIPV-----VGGSAGLLAVALI 85 (279)
T ss_pred HHHHHHHhhee-eccCccCCceEEEecccccceeCCeecccccceeee-----ccchhhHHHHHHH
Confidence 34555555532 344555443 37888 8999999998542 4555556555443
No 18
>COG0099 RpsM Ribosomal protein S13 [Translation, ribosomal structure and biogenesis]
Probab=27.06 E-value=59 Score=25.65 Aligned_cols=21 Identities=29% Similarity=0.646 Sum_probs=18.2
Q ss_pred ccCHHHHHHHHHHHHhccEEE
Q 040008 41 KLSKEEVVQSRNAVEKDYYFQ 61 (227)
Q Consensus 41 ~lt~~~~~~l~~~I~~~Y~~~ 61 (227)
.||++|++.+++.|++.|.++
T Consensus 47 eLteeei~~ir~~i~~~~~ve 67 (121)
T COG0099 47 ELTEEEIERLRDAIQNKYLVE 67 (121)
T ss_pred cCCHHHHHHHHHHHHhcCeeh
Confidence 489999999999999977553
No 19
>PF03487 IL13: Interleukin-13; InterPro: IPR020470 Interleukin-13 (IL-13) is a pleiotropic cytokine which may be important in the regulation of the inflammatory and immune responses []. It inhibits inflammatory cytokine production and synergises with IL-2 in regulating interferon-gamma synthesis. The sequences of IL-4 and IL-13 are distantly related.; PDB: 3G6D_A 3L5W_J 3BPO_A 1GA3_A 1IK0_A 3L5X_A 3L5Y_A 1IJZ_A 3LB6_B.
Probab=25.46 E-value=23 Score=22.54 Aligned_cols=19 Identities=37% Similarity=0.698 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhhhhhhhhc
Q 040008 146 VLIWTLVTSLLLMLGGIAG 164 (227)
Q Consensus 146 ~~lw~~v~~PL~~~G~~~g 164 (227)
.+||+-+.+-|+.+||+..
T Consensus 1 MAlwlt~vialtClggLas 19 (43)
T PF03487_consen 1 MALWLTVVIALTCLGGLAS 19 (43)
T ss_dssp -------------------
T ss_pred ChHHHHHHHHHHHhcccCC
Confidence 4789999999999998755
No 20
>PF05366 Sarcolipin: Sarcolipin; InterPro: IPR008028 Sarcolipin is a 31 amino acid integral membrane protein that regulates Ca-ATPase activity in skeletal muscle [].; GO: 0030234 enzyme regulator activity, 0016020 membrane; PDB: 1JDM_A.
Probab=25.39 E-value=56 Score=19.22 Aligned_cols=11 Identities=36% Similarity=1.177 Sum_probs=8.3
Q ss_pred HHHHHHHHHHh
Q 040008 142 IVVIVLIWTLV 152 (227)
Q Consensus 142 ~~~l~~lw~~v 152 (227)
++.+++||++|
T Consensus 16 litvilmwllv 26 (31)
T PF05366_consen 16 LITVILMWLLV 26 (31)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 45688899886
No 21
>KOG2489 consensus Transmembrane protein [General function prediction only]
Probab=22.84 E-value=39 Score=32.98 Aligned_cols=52 Identities=19% Similarity=0.321 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhccccCCCCCCCccCCCCCCCCCCCCCccchhhhhhhcccchhhhhHH
Q 040008 140 GTIVVIVLIWTLVTSLLLMLGGIAGKNSKAEFQAPCRTTKYPREIPSLPWYRSVILHMAMAGFLPFSAIYI 210 (227)
Q Consensus 140 ~t~~~l~~lw~~v~~PL~~~G~~~g~~~~~~~~~P~~~n~ipR~IP~~~~y~~~~~~~~~~G~lpF~~i~i 210 (227)
-.+..=.+-|+ .+||++-|++...= -+|...||. ..+.++.+|++-||-|+.
T Consensus 433 D~~A~kYLs~~--L~PL~vg~aVYSLl----------------Y~~hKsWYS-WvLn~l~~~vy~FGFi~M 484 (592)
T KOG2489|consen 433 DDQAMKYLSYL--LFPLLVGGAVYSLL----------------YVEHKSWYS-WVLNSLYNGVYAFGFIFM 484 (592)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHhhh----------------hcccccHHH-HHHHHHHhHHHHHHHHHh
Confidence 34444445564 47999999988862 234567994 678899999999999875
No 22
>PF13035 DUF3896: Protein of unknown function (DUF3896)
Probab=21.64 E-value=56 Score=22.15 Aligned_cols=23 Identities=17% Similarity=0.192 Sum_probs=17.2
Q ss_pred cccccccccCHHHHHHHHHHHHh
Q 040008 34 SVVVCRKKLSKEEVVQSRNAVEK 56 (227)
Q Consensus 34 c~~LC~~~lt~~~~~~l~~~I~~ 56 (227)
|+.|-.+.+++++.++++..|++
T Consensus 22 c~kls~~~ls~~er~qi~~eidn 44 (61)
T PF13035_consen 22 CKKLSSMHLSEKEREQIKLEIDN 44 (61)
T ss_pred HHHHhhcccCHHHHHHHHhhhhh
Confidence 44444568999999999888865
Done!