Query 040008
Match_columns 227
No_of_seqs 153 out of 593
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 06:09:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040008.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040008hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ev6_A Magnesium transport pro 54.5 9.8 0.00033 33.2 3.8 28 139-166 275-302 (339)
2 2iub_A CORA, divalent cation t 46.2 8.9 0.00031 33.8 2.1 33 134-166 294-326 (363)
3 1j3e_A SEQA protein; protein-D 23.3 20 0.00067 27.0 0.3 13 178-190 68-80 (115)
4 2elu_A Zinc finger protein 406 22.7 50 0.0017 19.3 1.9 24 31-57 9-32 (37)
5 3sk7_A Protein SEQA; sequestra 21.8 22 0.00075 26.8 0.3 12 179-190 70-81 (116)
6 1uzv_A Pseudomonas aeruginosa 21.6 62 0.0021 24.1 2.8 18 59-76 27-44 (114)
7 2bv4_A Lectin CV-IIL; mannose; 21.1 65 0.0022 24.0 2.8 18 59-76 27-44 (113)
8 3d85_C IL-23 subunit, interleu 21.0 22 0.00074 27.8 0.1 40 173-212 121-160 (178)
9 2chh_A Protein RSC3288; lectin 20.9 66 0.0022 24.0 2.8 18 59-76 28-45 (114)
10 1lrr_A SEQA protein; protein-D 18.8 28 0.00094 26.8 0.3 13 178-190 84-96 (131)
No 1
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=54.53 E-value=9.8 Score=33.16 Aligned_cols=28 Identities=25% Similarity=0.405 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHHhhhhhhhhhhhhccc
Q 040008 139 FGTIVVIVLIWTLVTSLLLMLGGIAGKN 166 (227)
Q Consensus 139 f~t~~~l~~lw~~v~~PL~~~G~~~g~~ 166 (227)
-..+..++.+|-.|-+|+|++.|++|-|
T Consensus 275 ~N~~mk~LTiit~IflP~T~IaGiyGMN 302 (339)
T 4ev6_A 275 MNQIMKILTMVTTIFAVPMWITGIYGMN 302 (339)
T ss_dssp HHHHHHHHHHHHHHSSHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCc
Confidence 3556788999999999999999999986
No 2
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=46.16 E-value=8.9 Score=33.80 Aligned_cols=33 Identities=21% Similarity=0.313 Sum_probs=25.7
Q ss_pred cCCCchHHHHHHHHHHHHhhhhhhhhhhhhccc
Q 040008 134 TVALPFGTIVVIVLIWTLVTSLLLMLGGIAGKN 166 (227)
Q Consensus 134 s~a~pf~t~~~l~~lw~~v~~PL~~~G~~~g~~ 166 (227)
..+.--..+...+.+|-.|-+|+|++.|++|-|
T Consensus 294 ~is~~~N~imk~LTiit~IflP~T~IaGiyGMN 326 (363)
T 2iub_A 294 SVSNKTNEVMKVLTIIATIFMPLTFIAGIYGMN 326 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 333445667789999999999999999999986
No 3
>1j3e_A SEQA protein; protein-DNA complex, recognition of hemimethylated DNA, mismatched DNA, replication; HET: 6MA; 2.50A {Escherichia coli} SCOP: d.228.1.1 PDB: 1iu3_C
Probab=23.28 E-value=20 Score=27.01 Aligned_cols=13 Identities=23% Similarity=0.879 Sum_probs=10.6
Q ss_pred CCCCCCCCCCCCc
Q 040008 178 TKYPREIPSLPWY 190 (227)
Q Consensus 178 n~ipR~IP~~~~y 190 (227)
..=||+||..|++
T Consensus 68 ~tkPK~Ip~TpfW 80 (115)
T 1j3e_A 68 QTKPKHVPGTPYW 80 (115)
T ss_dssp SCCCEECTTSSCE
T ss_pred CCCCCcCCCCCee
Confidence 3458999999987
No 4
>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A
Probab=22.68 E-value=50 Score=19.26 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=17.4
Q ss_pred ccccccccccccCHHHHHHHHHHHHhc
Q 040008 31 DKESVVVCRKKLSKEEVVQSRNAVEKD 57 (227)
Q Consensus 31 n~~c~~LC~~~lt~~~~~~l~~~I~~~ 57 (227)
.+-|. .|+++++ |++.|.+.|++.
T Consensus 9 kqhcr-fckkkys--dvknlikhire~ 32 (37)
T 2elu_A 9 KQHCR-FCKKKYS--DVKNLIKHIRDA 32 (37)
T ss_dssp CCEET-TTTEECS--SHHHHHHHHHHT
T ss_pred HHHHH-HHHHHHH--HHHHHHHHHHHh
Confidence 34564 6988886 677888888764
No 5
>3sk7_A Protein SEQA; sequestration, negative regulator, DNA replication initiatio binding, replication inhibitor; HET: FME; 1.50A {Vibrio cholerae}
Probab=21.76 E-value=22 Score=26.78 Aligned_cols=12 Identities=33% Similarity=0.966 Sum_probs=10.0
Q ss_pred CCCCCCCCCCCc
Q 040008 179 KYPREIPSLPWY 190 (227)
Q Consensus 179 ~ipR~IP~~~~y 190 (227)
.=|||||..|++
T Consensus 70 tkPK~Ip~TpfW 81 (116)
T 3sk7_A 70 TKPKAIPNTPFW 81 (116)
T ss_dssp SCCEECTTSSCE
T ss_pred CCCCcCCCCCee
Confidence 448999999976
No 6
>1uzv_A Pseudomonas aeruginosa lectin II; fucose, calcium; HET: FUC; 1.0A {Pseudomonas aeruginosa} SCOP: b.115.1.1 PDB: 1our_A 1oux_A 1ovp_A* 1ovs_A* 1oxc_A* 1ous_A* 2boj_A* 2bp6_A* 2vuc_A* 2vud_A* 3dcq_A* 1w8f_A* 1gzt_A* 1w8h_A* 2jdh_A* 2jdk_A* 2jdp_A* 2jdn_A* 2jdm_A* 2jdu_A* ...
Probab=21.61 E-value=62 Score=24.12 Aligned_cols=18 Identities=11% Similarity=0.122 Sum_probs=15.1
Q ss_pred EEEEEEeceeeeEEecee
Q 040008 59 YFQMYYDDLLIWGFIGKV 76 (227)
Q Consensus 59 ~~~~~iDnLPv~~~ig~~ 76 (227)
.++.||||.|++.+.|..
T Consensus 27 ti~vyIdd~~~aT~~g~g 44 (114)
T 1uzv_A 27 TVNVLVNNETAATFSGQS 44 (114)
T ss_dssp EEEEEETTEEEEEEEEEE
T ss_pred eEEEEECCeecceeeccC
Confidence 578999999999887654
No 7
>2bv4_A Lectin CV-IIL; mannose; HET: MMA; 1.0A {Chromobacterium violaceum} PDB: 2boi_A*
Probab=21.06 E-value=65 Score=23.98 Aligned_cols=18 Identities=17% Similarity=0.172 Sum_probs=15.0
Q ss_pred EEEEEEeceeeeEEecee
Q 040008 59 YFQMYYDDLLIWGFIGKV 76 (227)
Q Consensus 59 ~~~~~iDnLPv~~~ig~~ 76 (227)
.++.||||.|++.+.|..
T Consensus 27 tikvyIdd~~~aT~tg~g 44 (113)
T 2bv4_A 27 HVEIFVDNEPRAAFSGVG 44 (113)
T ss_dssp EEEEEETTEEEEEEEEEE
T ss_pred eEEEEECCeecceeeccC
Confidence 578999999999887654
No 8
>3d85_C IL-23 subunit, interleukin-23 subunit P19; FAB, immune system/cytokine complex; 1.90A {Homo sapiens} PDB: 3d87_A* 3qwr_B* 3duh_C*
Probab=20.99 E-value=22 Score=27.81 Aligned_cols=40 Identities=23% Similarity=0.406 Sum_probs=17.7
Q ss_pred CCccCCCCCCCCCCCCCccchhhhhhhcccchhhhhHHHH
Q 040008 173 APCRTTKYPREIPSLPWYRSVILHMAMAGFLPFSAIYIEL 212 (227)
Q Consensus 173 ~P~~~n~ipR~IP~~~~y~~~~~~~~~~G~lpF~~i~iel 212 (227)
..-.+.|+||..|.|||-...+-.-++-.+--|.+|..-+
T Consensus 121 hhwet~q~Ps~~psq~wqr~llr~kilrslqafvavaarv 160 (178)
T 3d85_C 121 HHWETQQIPSLSPSQPWQRLLLRFKILRSLQAFVAVAARV 160 (178)
T ss_dssp ----------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccccCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557889999999999954332223344555566665443
No 9
>2chh_A Protein RSC3288; lectin, sugar-binding protein, D-mannose, plant pathogen, hypothetical protein; HET: MAN BMA; 1.0A {Ralstonia solanacearum} SCOP: b.115.1.1 PDB: 1uqx_A*
Probab=20.92 E-value=66 Score=23.99 Aligned_cols=18 Identities=22% Similarity=0.294 Sum_probs=15.0
Q ss_pred EEEEEEeceeeeEEecee
Q 040008 59 YFQMYYDDLLIWGFIGKV 76 (227)
Q Consensus 59 ~~~~~iDnLPv~~~ig~~ 76 (227)
.++.||||.|++.+.|..
T Consensus 28 tikvyIdd~~~aT~tg~g 45 (114)
T 2chh_A 28 TIQVLVDNVVKATFTGSG 45 (114)
T ss_dssp EEEEEETTEEEEEEEEEE
T ss_pred eEEEEECCeecceeeccC
Confidence 578999999999887654
No 10
>1lrr_A SEQA protein; protein-DNA complex, replication, methylated GATC, replication inhibitor/DNA complex; HET: 6MA; 2.65A {Escherichia coli} SCOP: d.228.1.1
Probab=18.78 E-value=28 Score=26.77 Aligned_cols=13 Identities=23% Similarity=0.879 Sum_probs=10.6
Q ss_pred CCCCCCCCCCCCc
Q 040008 178 TKYPREIPSLPWY 190 (227)
Q Consensus 178 n~ipR~IP~~~~y 190 (227)
..=||+||..|++
T Consensus 84 ~tkPK~Ip~TpfW 96 (131)
T 1lrr_A 84 QTKPKHVPGTPYW 96 (131)
T ss_dssp CCCCEECTTSSCE
T ss_pred CCCCCcCCCCCeE
Confidence 3458999999987
Done!