Query 040008
Match_columns 227
No_of_seqs 153 out of 593
Neff 6.6
Searched_HMMs 13730
Date Mon Mar 25 06:09:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040008.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/040008hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2iuba2 f.17.3.1 (A:286-349) M 44.9 6.2 0.00045 24.5 2.3 25 142-166 5-29 (64)
2 d1j3ea_ d.228.1.1 (A:) Replica 20.0 12 0.00086 26.4 0.3 12 179-190 69-80 (115)
3 d1r7ma2 d.95.2.1 (A:121-225) D 17.5 28 0.002 23.4 1.9 29 34-62 39-67 (105)
4 d1uzva_ b.115.1.1 (A:) Fucose- 14.9 52 0.0038 22.7 2.8 18 59-76 27-44 (114)
5 d1q90d_ f.32.1.1 (D:) Subunit 13.7 80 0.0058 22.8 3.8 35 174-209 62-102 (156)
6 d2axtj1 f.23.32.1 (J:7-40) Pho 8.6 1.6E+02 0.012 15.6 3.1 29 137-165 2-30 (34)
7 d2uubm1 a.156.1.1 (M:2-126) Ri 8.5 91 0.0066 21.4 2.3 20 41-60 46-65 (125)
8 d1oh1a_ b.61.2.2 (A:) Staphost 8.4 74 0.0054 21.3 1.7 27 13-39 30-56 (109)
9 d1okra_ a.4.5.39 (A:) Methicil 8.3 69 0.005 21.3 1.5 19 38-56 101-119 (120)
10 d1vk3a3 d.139.1.1 (A:167-345) 8.0 99 0.0072 22.3 2.5 60 26-112 110-169 (179)
No 1
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=44.92 E-value=6.2 Score=24.51 Aligned_cols=25 Identities=24% Similarity=0.405 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhccc
Q 040008 142 IVVIVLIWTLVTSLLLMLGGIAGKN 166 (227)
Q Consensus 142 ~~~l~~lw~~v~~PL~~~G~~~g~~ 166 (227)
....+..+-.|-+|++++.|++|-|
T Consensus 5 ~mk~lT~it~iflP~t~i~gifGMN 29 (64)
T d2iuba2 5 VMKVLTIIATIFMPLTFIAGIYGMN 29 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCC--
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccC
Confidence 4567788888999999999999986
No 2
>d1j3ea_ d.228.1.1 (A:) Replication modulator SeqA, C-terminal DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=19.97 E-value=12 Score=26.40 Aligned_cols=12 Identities=25% Similarity=0.952 Sum_probs=10.2
Q ss_pred CCCCCCCCCCCc
Q 040008 179 KYPREIPSLPWY 190 (227)
Q Consensus 179 ~ipR~IP~~~~y 190 (227)
.=||+||..|++
T Consensus 69 tkPk~Ip~TpfW 80 (115)
T d1j3ea_ 69 TKPKHVPGTPYW 80 (115)
T ss_dssp CCCEECTTSSCE
T ss_pred CCCccCCCCCeE
Confidence 348999999987
No 3
>d1r7ma2 d.95.2.1 (A:121-225) DNA endonuclease I-SceI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=17.55 E-value=28 Score=23.44 Aligned_cols=29 Identities=17% Similarity=0.268 Sum_probs=24.5
Q ss_pred cccccccccCHHHHHHHHHHHHhccEEEE
Q 040008 34 SVVVCRKKLSKEEVVQSRNAVEKDYYFQM 62 (227)
Q Consensus 34 c~~LC~~~lt~~~~~~l~~~I~~~Y~~~~ 62 (227)
.-.+|+...|.+|++.|.+++.+.|-.+-
T Consensus 39 ~i~l~T~~Ft~~e~~~L~~~L~~kf~l~~ 67 (105)
T d1r7ma2 39 SIVLNTQSFTFEEVEYLVKGLRNKFQLNC 67 (105)
T ss_dssp CEEECCTTSCHHHHHHHHHHHHHHHCCCE
T ss_pred ceEEEeCCCCHHHHHHHHHHHHHHhCceE
Confidence 44689999999999999999999986543
No 4
>d1uzva_ b.115.1.1 (A:) Fucose-binding lectin II (PA-LII) {Pseudomonas aeruginosa [TaxId: 287]}
Probab=14.87 E-value=52 Score=22.75 Aligned_cols=18 Identities=11% Similarity=0.122 Sum_probs=15.1
Q ss_pred EEEEEEeceeeeEEecee
Q 040008 59 YFQMYYDDLLIWGFIGKV 76 (227)
Q Consensus 59 ~~~~~iDnLPv~~~ig~~ 76 (227)
.++.+|||.|++.+.|..
T Consensus 27 ti~v~id~~~~atf~G~g 44 (114)
T d1uzva_ 27 TVNVLVNNETAATFSGQS 44 (114)
T ss_dssp EEEEEETTEEEEEEEEEE
T ss_pred EEEEEECCcchhheeccC
Confidence 578899999999997754
No 5
>d1q90d_ f.32.1.1 (D:) Subunit IV of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=13.68 E-value=80 Score=22.80 Aligned_cols=35 Identities=26% Similarity=0.476 Sum_probs=22.5
Q ss_pred CccCCCCCCCCCCCCCccchhhhhh------hcccchhhhhH
Q 040008 174 PCRTTKYPREIPSLPWYRSVILHMA------MAGFLPFSAIY 209 (227)
Q Consensus 174 P~~~n~ipR~IP~~~~y~~~~~~~~------~~G~lpF~~i~ 209 (227)
|.....-|-+| ...||--+.+.++ +||++..+.+.
T Consensus 62 pANP~~TP~hI-~PEWYFL~~yaiLR~iP~kl~GVi~~~~~i 102 (156)
T d1q90d_ 62 PANPFATPLEI-LPEWYFYPVFQILRVVPNKLLGVLLMAAVP 102 (156)
T ss_dssp BCCTTCCCSSC-CCCGGGHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCC-CcchhhHHHHHHHHhCChHHHHHHHHHHHH
Confidence 33333445565 4459988888888 78876655543
No 6
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=8.65 E-value=1.6e+02 Score=15.65 Aligned_cols=29 Identities=21% Similarity=0.339 Sum_probs=16.8
Q ss_pred CchHHHHHHHHHHHHhhhhhhhhhhhhcc
Q 040008 137 LPFGTIVVIVLIWTLVTSLLLMLGGIAGK 165 (227)
Q Consensus 137 ~pf~t~~~l~~lw~~v~~PL~~~G~~~g~ 165 (227)
+|+..+-.+.-+-...-+-+.|-|+|.|.
T Consensus 2 iPLWlv~tv~G~~vi~~vG~FfYGsYsGl 30 (34)
T d2axtj1 2 IPLWIVATVAGMGVIVIVGLFFYGAYAGL 30 (34)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHTTTST
T ss_pred CcEEEeeehhhhhhHhheeeeeeeeeccc
Confidence 45444444444444445566777888886
No 7
>d2uubm1 a.156.1.1 (M:2-126) Ribosomal protein S13 {Thermus thermophilus [TaxId: 274]}
Probab=8.48 E-value=91 Score=21.44 Aligned_cols=20 Identities=35% Similarity=0.537 Sum_probs=17.3
Q ss_pred ccCHHHHHHHHHHHHhccEE
Q 040008 41 KLSKEEVVQSRNAVEKDYYF 60 (227)
Q Consensus 41 ~lt~~~~~~l~~~I~~~Y~~ 60 (227)
.|+++|++.+++.|++.|.+
T Consensus 46 ~Lt~~qi~~I~~~i~~~~~i 65 (125)
T d2uubm1 46 DLTEAEVVRLREYVENTWKL 65 (125)
T ss_dssp GCCHHHHHHHHHHHHHHSCC
T ss_pred cccHHHHHHHHHHHhhhhhh
Confidence 58999999999999987743
No 8
>d1oh1a_ b.61.2.2 (A:) Staphostatin A (SAV1910, SA1726) {Staphylococcus aureus [TaxId: 1280]}
Probab=8.43 E-value=74 Score=21.35 Aligned_cols=27 Identities=19% Similarity=0.410 Sum_probs=22.8
Q ss_pred eeecCeeeeCCeEEEEccccccccccc
Q 040008 13 VLNEDRLVSAPYKLNFRDDKESVVVCR 39 (227)
Q Consensus 13 vL~Gdri~~Spy~i~f~~n~~c~~LC~ 39 (227)
+..-..+..||.++.|+++...-.+|+
T Consensus 30 ~WhP~~~~tsPLkitfnk~i~p~YiCk 56 (109)
T d1oh1a_ 30 EWHPQDLNDSPLKFILSTSDDSDYICK 56 (109)
T ss_dssp EESSSTTTTCCEEEEESCTTTCCEEEE
T ss_pred eecchhccCCceEEEEecCCCchhhhh
Confidence 444578889999999999999888995
No 9
>d1okra_ a.4.5.39 (A:) Methicillin resistance regulatory protein MecI {Staphylococcus aureus [TaxId: 1280]}
Probab=8.29 E-value=69 Score=21.31 Aligned_cols=19 Identities=32% Similarity=0.524 Sum_probs=15.6
Q ss_pred cccccCHHHHHHHHHHHHh
Q 040008 38 CRKKLSKEEVVQSRNAVEK 56 (227)
Q Consensus 38 C~~~lt~~~~~~l~~~I~~ 56 (227)
|...++++|++.|++.|++
T Consensus 101 ~~~~ls~~el~~L~~lL~~ 119 (120)
T d1okra_ 101 EKEDLSQDEIEELRNILNK 119 (120)
T ss_dssp HHSCCCHHHHHHHHHHHTC
T ss_pred HccCCCHHHHHHHHHHHhc
Confidence 4446899999999999875
No 10
>d1vk3a3 d.139.1.1 (A:167-345) Phosphoribosylformylglycinamidine synthase II, domains 2 and 4 {Thermotoga maritima [TaxId: 2336]}
Probab=8.00 E-value=99 Score=22.29 Aligned_cols=60 Identities=20% Similarity=0.316 Sum_probs=36.6
Q ss_pred EEEccccccccccccccCHHHHHHHHHHHHhccEEEEEEeceeeeEEeceeccccCCCCCCceEEEeeeEEEEEEEeCCe
Q 040008 26 LNFRDDKESVVVCRKKLSKEEVVQSRNAVEKDYYFQMYYDDLLIWGFIGKVDKEWKTHPSEYKYFLYKHIQFDILYNKDR 105 (227)
Q Consensus 26 i~f~~n~~c~~LC~~~lt~~~~~~l~~~I~~~Y~~~~~iDnLPv~~~ig~~~~~~~g~~~~~~~~L~NH~~f~I~Yn~~r 105 (227)
+-|..++..-+++ .++++.+.+.+..+++ |+|+ ..+|+..++ -+++|.+++.+
T Consensus 110 ~lfsEsq~R~vv~---v~~~~~~~~~~~~~~~--------~~~~-~~IG~vt~~---------------~~l~i~~~~~~ 162 (179)
T d1vk3a3 110 ILISESQERMAVV---TSPQKASRILEIARKH--------LLFG-DVVAEVIEE---------------PVYRVMYRNDL 162 (179)
T ss_dssp HHHCCCSSEEEEE---ECGGGHHHHHHHHHHT--------TCEE-EEEEEEESS---------------CEEEEEETTEE
T ss_pred eEEecCcCcEEEE---echhHHHHHHHHHHHc--------CCCc-cEEEEEecC---------------CeEEEEECCcE
Confidence 3444444444433 5677888888877753 6664 557875432 13466677778
Q ss_pred EEEEEeE
Q 040008 106 VIEISPQ 112 (227)
Q Consensus 106 IVg~~v~ 112 (227)
||...+.
T Consensus 163 ivdlpv~ 169 (179)
T d1vk3a3 163 VMEVPVQ 169 (179)
T ss_dssp EEEEEHH
T ss_pred EEEeEHH
Confidence 8887764
Done!