Query 040009
Match_columns 70
No_of_seqs 61 out of 63
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 06:10:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040009.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040009hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ljo_A Non-specific lipid-tran 29.1 39 0.0013 20.4 2.5 21 13-33 16-36 (93)
2 1afh_A Maize nonspecific lipid 27.5 44 0.0015 19.9 2.5 49 13-61 16-78 (93)
3 1bwo_A NS-LTP1, nonspecific li 26.6 47 0.0016 19.7 2.5 49 13-61 15-76 (90)
4 1n89_A Lipid transfer protein; 25.2 53 0.0018 18.5 2.4 21 16-37 15-35 (67)
5 1l6h_A LTP2, non-specific lipi 24.4 47 0.0016 18.8 2.1 22 15-37 15-36 (69)
6 1siy_A LTP 1, NS-LTP1, nonspec 23.0 61 0.0021 19.2 2.5 49 13-61 15-76 (91)
7 2alg_A Non-specific lipid tran 20.9 49 0.0017 19.7 1.7 48 14-61 17-77 (92)
8 2knp_A Mcocc-1; disulfide-rich 19.9 13 0.00045 19.6 -0.9 12 34-45 17-28 (33)
9 3c8l_A FTSZ-like protein of un 17.8 34 0.0012 22.6 0.5 27 21-47 22-49 (122)
10 1k8k_E P21, ARP2/3 complex 21 17.0 37 0.0013 23.8 0.6 34 24-57 90-132 (178)
No 1
>2ljo_A Non-specific lipid-transfer protein 2; lipid transport; NMR {Lens culinaris}
Probab=29.06 E-value=39 Score=20.45 Aligned_cols=21 Identities=14% Similarity=0.550 Sum_probs=16.8
Q ss_pred HHHcCccccChhhHHHHHHhh
Q 040009 13 FFFNNQVDICPDCCRAIDIIT 33 (70)
Q Consensus 13 fflnGq~~iG~~CC~Ai~~I~ 33 (70)
.|+.|.....+.||.+++.+.
T Consensus 16 ~Yv~g~~~p~~~CC~gv~~l~ 36 (93)
T 2ljo_A 16 TYLTGGPGPSPQCCGGVKKLL 36 (93)
T ss_dssp HHHTTSSCCCHHHHHHHHHHH
T ss_pred HHHcCCCCCCCchhhHHHHHH
Confidence 566776568899999999884
No 2
>1afh_A Maize nonspecific lipid transfer protein; lipid-binding protein, molecular modeling,; NMR {Zea mays} SCOP: a.52.1.1 PDB: 1fk0_A* 1fk1_A* 1fk2_A* 1fk3_A* 1fk4_A* 1fk5_A* 1fk6_A* 1fk7_A* 1mzl_A 1mzm_A* 1bv2_A 1rzl_A* 1uva_A* 1uvb_A* 1uvc_A*
Probab=27.52 E-value=44 Score=19.92 Aligned_cols=49 Identities=18% Similarity=0.395 Sum_probs=29.4
Q ss_pred HHHcCccc-cChhhHHHHHHhh----------hcchh-h-hhccC-CCCcchhhhhhcccccC
Q 040009 13 FFFNNQVD-ICPDCCRAIDIIT----------RNCWP-A-MLTSL-GFTAEEGNILRGYCDVS 61 (70)
Q Consensus 13 fflnGq~~-iG~~CC~Ai~~I~----------~~CWP-~-Mf~~~-gft~~e~~~Lkg~C~~~ 61 (70)
.+++|... -.++||.+++.+. ..|-= + ..+.+ ++-+.-+.-|-+-|...
T Consensus 16 ~y~~~~~~~Ps~~CC~gv~~l~~~a~t~~dr~~~ClC~~~~~~~~~~in~~~A~~LP~~C~v~ 78 (93)
T 1afh_A 16 SYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVS 78 (93)
T ss_dssp HHHTTSCCSCCHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHCC
T ss_pred HHHcCCCCCChHHHHHHHHHHHHhhcCCCCCcccCEeeccccccccCcCHHHHHHHHHHcCCC
Confidence 45566554 6679999999995 24532 2 22233 45555566676777553
No 3
>1bwo_A NS-LTP1, nonspecific lipid-transfer protein; wheat, lipid binding, crystallography; HET: LPC; 2.10A {Triticum aestivum} SCOP: a.52.1.1 PDB: 1cz2_A* 1gh1_A 1be2_A* 1jtb_A* 1lip_A 1mid_A* 3cee_A* 3gsh_A*
Probab=26.57 E-value=47 Score=19.72 Aligned_cols=49 Identities=12% Similarity=0.428 Sum_probs=30.5
Q ss_pred HHHcCccccChhhHHHHHHhhh------------cchhhhhccC-CCCcchhhhhhcccccC
Q 040009 13 FFFNNQVDICPDCCRAIDIITR------------NCWPAMLTSL-GFTAEEGNILRGYCDVS 61 (70)
Q Consensus 13 fflnGq~~iG~~CC~Ai~~I~~------------~CWP~Mf~~~-gft~~e~~~Lkg~C~~~ 61 (70)
.+++|.....++||.+++.+.. .|--....++ ++.+.-+.-|-+-|.-.
T Consensus 15 ~y~~~~~~Ps~~CC~~lk~l~~~a~t~~dr~~~ClClk~~~~~~~~in~~~A~~LP~~C~v~ 76 (90)
T 1bwo_A 15 SYVQGGPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIHNLNEDNARSIPPKCGVN 76 (90)
T ss_dssp HHHTTCSCCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHTTCTTCCHHHHHTHHHHHTCC
T ss_pred HHHcCCCCCCHHHhHHHHHHHhhccCCCCCCccCcCccCchhccCCcCHHHHHHHHHHcCCC
Confidence 4555544477789999998753 3433333444 56666666777777654
No 4
>1n89_A Lipid transfer protein; lipid transport; HET: PGM; NMR {Triticum turgidum subsp} SCOP: a.52.1.1 PDB: 1tuk_A*
Probab=25.24 E-value=53 Score=18.52 Aligned_cols=21 Identities=14% Similarity=0.550 Sum_probs=15.2
Q ss_pred cCccccChhhHHHHHHhhhcch
Q 040009 16 NNQVDICPDCCRAIDIITRNCW 37 (70)
Q Consensus 16 nGq~~iG~~CC~Ai~~I~~~CW 37 (70)
+|....-++||.+++.. ..|=
T Consensus 15 ~~~~~Ps~~CC~~lk~~-~~Cl 35 (67)
T 1n89_A 15 LSGAKPSGECCGNLRAQ-QGCF 35 (67)
T ss_dssp TTCCCCCHHHHHHHHHH-SSHH
T ss_pred cCCCCCCHHHHHhhCCC-CCCC
Confidence 44445788999999976 5663
No 5
>1l6h_A LTP2, non-specific lipid transfer protein; NSLTP2, plant LTP, lipid transport; NMR {Oryza sativa} SCOP: a.52.1.1
Probab=24.40 E-value=47 Score=18.84 Aligned_cols=22 Identities=14% Similarity=0.569 Sum_probs=15.5
Q ss_pred HcCccccChhhHHHHHHhhhcch
Q 040009 15 FNNQVDICPDCCRAIDIITRNCW 37 (70)
Q Consensus 15 lnGq~~iG~~CC~Ai~~I~~~CW 37 (70)
++|....-++||.+++.. ..|=
T Consensus 15 v~~~~~Ps~~CC~~lk~~-~~Cl 36 (69)
T 1l6h_A 15 IAGGARPTAACCSSLRAQ-QGCF 36 (69)
T ss_dssp HTTCCSTTHHHHHHHHHH-HHHH
T ss_pred HcCCCCCCHHHHHhhCCC-CCCC
Confidence 344445788999999976 5563
No 6
>1siy_A LTP 1, NS-LTP1, nonspecific lipid-transfer protein 1; alpha helix, lipid binding protein; NMR {Vigna radiata var}
Probab=22.98 E-value=61 Score=19.19 Aligned_cols=49 Identities=27% Similarity=0.569 Sum_probs=30.0
Q ss_pred HHHcCccccChhhHHHHHHh--------hh--cc--hhhhhccC-CCCcchhhhhhcccccC
Q 040009 13 FFFNNQVDICPDCCRAIDII--------TR--NC--WPAMLTSL-GFTAEEGNILRGYCDVS 61 (70)
Q Consensus 13 fflnGq~~iG~~CC~Ai~~I--------~~--~C--WP~Mf~~~-gft~~e~~~Lkg~C~~~ 61 (70)
.+++|.....++||.+++.+ ++ .| =-.....+ ++.+.-+.-|=+.|.-.
T Consensus 15 ~yv~~~~~Ps~~CC~~lk~l~~~a~t~~d~~~~ClC~k~~~~~~~~in~~~A~~LP~~Cgv~ 76 (91)
T 1siy_A 15 GFLQKGGVVPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVRGINPNNAEALPGKCGVN 76 (91)
T ss_dssp HHHTSCSCCCHHHHHHHHHHHTTTCSSHHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHTCC
T ss_pred HHHhCCCCCcHHHHHHHHHHHhhhccCCCCCcCCcccCCcccccCCcCHHHHHHHHHHcCCC
Confidence 34555444777899999998 32 45 32333444 56666666777777654
No 7
>2alg_A Non-specific lipid transfer protein; LTP, NS-LTP, FOOD allergen, lipid transport; HET: DAO P6G; 2.30A {Prunus persica} PDB: 2b5s_A*
Probab=20.86 E-value=49 Score=19.67 Aligned_cols=48 Identities=25% Similarity=0.591 Sum_probs=30.4
Q ss_pred HHcCccccChhhHHHHHHhh-------h---cc--hhhhhccC-CCCcchhhhhhcccccC
Q 040009 14 FFNNQVDICPDCCRAIDIIT-------R---NC--WPAMLTSL-GFTAEEGNILRGYCDVS 61 (70)
Q Consensus 14 flnGq~~iG~~CC~Ai~~I~-------~---~C--WP~Mf~~~-gft~~e~~~Lkg~C~~~ 61 (70)
+++|....-++||.+++.+. + .| ==...+.+ ++.+.-+.-|-+-|.-.
T Consensus 17 y~~~~~~p~~~CC~~lk~l~~~a~t~~d~~~~ClC~~~~~~~~~~in~~~A~~LP~~Cgv~ 77 (92)
T 2alg_A 17 YVRGGGAVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVS 77 (92)
T ss_dssp HHHHCSCCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTTCC
T ss_pred HHcCCCCCCHHHHHHHHHHHhhhcccCCCCcCCccccCcccccCccChHHHHHHHHHcCCC
Confidence 44444457789999999975 2 35 32333444 66666677777888654
No 8
>2knp_A Mcocc-1; disulfide-rich peptides, cystine knot motif, cytotoxic, melanoma cell LINE, non-hemolytic, seeds extract, unknown function; NMR {Momordica cochinchinensis}
Probab=19.86 E-value=13 Score=19.61 Aligned_cols=12 Identities=33% Similarity=1.143 Sum_probs=8.5
Q ss_pred hcchhhhhccCC
Q 040009 34 RNCWPAMLTSLG 45 (70)
Q Consensus 34 ~~CWP~Mf~~~g 45 (70)
-+|||..-|-.|
T Consensus 17 crcwptvtpgvg 28 (33)
T 2knp_A 17 CRCWPTVTPGVG 28 (33)
T ss_dssp CCEEECSSTTEE
T ss_pred eeeccccCCCee
Confidence 379998776544
No 9
>3c8l_A FTSZ-like protein of unknown function; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.22A {Nostoc punctiforme}
Probab=17.78 E-value=34 Score=22.56 Aligned_cols=27 Identities=22% Similarity=0.363 Sum_probs=21.6
Q ss_pred cChhhHHHHH-HhhhcchhhhhccCCCC
Q 040009 21 ICPDCCRAID-IITRNCWPAMLTSLGFT 47 (70)
Q Consensus 21 iG~~CC~Ai~-~I~~~CWP~Mf~~~gft 47 (70)
.-.+..+|++ +|.|||-|.|+..+|+.
T Consensus 22 ~TkAA~RAvrDAI~~nslp~~~~~~g~~ 49 (122)
T 3c8l_A 22 PTIAASRAVRNAIAHNALPGVWEVAGLS 49 (122)
T ss_dssp HHHHHHHHHHHHHTTCCCSSHHHHHTCS
T ss_pred HHHHHHHHHHHHHhhhcchhHHHHCCCC
Confidence 3456677774 79999999999999984
No 10
>1k8k_E P21, ARP2/3 complex 21 kDa subunit, P21-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: a.148.1.1 PDB: 1tyq_E* 1u2v_E* 2p9i_E* 2p9k_E* 2p9l_E 2p9n_E* 2p9p_E* 2p9s_E* 2p9u_E* 3dxk_E* 3dxm_E* 3rse_E
Probab=17.00 E-value=37 Score=23.76 Aligned_cols=34 Identities=15% Similarity=0.275 Sum_probs=20.9
Q ss_pred hhHHHHHHhhhcchh----hhhccCCCCc-----chhhhhhcc
Q 040009 24 DCCRAIDIITRNCWP----AMLTSLGFTA-----EEGNILRGY 57 (70)
Q Consensus 24 ~CC~Ai~~I~~~CWP----~Mf~~~gft~-----~e~~~Lkg~ 57 (70)
.+=|++....-+=+| .=||+++++. +|++.||+|
T Consensus 90 ea~k~l~~lal~~F~iPGd~gFpLn~~y~~P~~~~e~d~lR~Y 132 (178)
T 1k8k_E 90 QGEKEMYTLGITNFPIPGEPGFPLNAIYAKPANKQEDEVMRAY 132 (178)
T ss_dssp HHHHHHHHHHHSCCCCTTSTTCTTTTTSCCCSSHHHHHHHHHH
T ss_pred HHHHHHHHHhhhcCCCCCCCCCCccccccCCCChhHHHHHHHH
Confidence 344555544433344 3466676554 999999998
Done!