Query 040009
Match_columns 70
No_of_seqs 61 out of 63
Neff 3.6
Searched_HMMs 13730
Date Mon Mar 25 06:10:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040009.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/040009hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fk5a_ a.52.1.1 (A:) Plant no 38.8 10 0.00075 21.4 2.4 48 13-60 16-77 (93)
2 d1mida_ a.52.1.1 (A:) Plant no 38.5 11 0.00077 21.3 2.5 49 13-61 15-76 (91)
3 d1k8rb_ d.15.1.5 (B:) Protein 17.9 20 0.0014 21.3 1.0 15 1-15 15-29 (95)
4 d1gv2a2 a.4.1.3 (A:144-190) c- 15.8 19 0.0014 17.9 0.5 14 44-57 2-15 (47)
5 d2cqea2 g.66.1.1 (A:429-457) Z 12.2 32 0.0023 16.5 0.6 9 53-61 12-20 (29)
6 d1w0ta_ a.4.1.4 (A:) DNA-bindi 11.8 30 0.0022 17.3 0.5 14 44-57 3-16 (52)
7 d1gvda_ a.4.1.3 (A:) c-Myb, DN 11.8 29 0.0021 17.4 0.5 14 44-57 4-17 (52)
8 d1j5ja_ g.3.7.2 (A:) Bekm-1 {L 11.4 29 0.0021 17.3 0.4 10 33-42 10-22 (36)
9 d1fexa_ a.4.1.3 (A:) Rap1 {Hum 10.6 32 0.0023 18.3 0.4 17 44-60 3-19 (59)
10 d1bdsa_ g.9.1.1 (A:) BDs-I def 10.1 21 0.0016 18.4 -0.5 8 33-40 29-38 (43)
No 1
>d1fk5a_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Maize (Zea mays) [TaxId: 4577]}
Probab=38.79 E-value=10 Score=21.41 Aligned_cols=48 Identities=15% Similarity=0.324 Sum_probs=30.2
Q ss_pred HHHcCccc-cChhhHHHHHHhhh--------cc----hhhhhc-cCCCCcchhhhhhccccc
Q 040009 13 FFFNNQVD-ICPDCCRAIDIITR--------NC----WPAMLT-SLGFTAEEGNILRGYCDV 60 (70)
Q Consensus 13 fflnGq~~-iG~~CC~Ai~~I~~--------~C----WP~Mf~-~~gft~~e~~~Lkg~C~~ 60 (70)
.|++|... -.+.||.+++.+-. +| =-.+.. ..|+-+.-..-|=.-|..
T Consensus 16 ~Yltg~~~~Ps~~CC~gv~~l~~~a~t~~dr~~lC~cl~~~~~~~~~in~~ra~~LP~~C~v 77 (93)
T d1fk5a_ 16 SYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGV 77 (93)
T ss_dssp HHHTTCSSSCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHTTC
T ss_pred HHHhCCCCCCCCchhHHHHHHHHHccCCccHHHHHHhhhhcccccCCcCHHHHHhhhHhcCC
Confidence 46777765 78899999998753 22 222222 235666666667777754
No 2
>d1mida_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Barley (Hordeum vulgare) [TaxId: 4513]}
Probab=38.55 E-value=11 Score=21.34 Aligned_cols=49 Identities=8% Similarity=0.306 Sum_probs=30.6
Q ss_pred HHHcCccccChhhHHHHHHhhh--------cc----hhhhhcc-CCCCcchhhhhhcccccC
Q 040009 13 FFFNNQVDICPDCCRAIDIITR--------NC----WPAMLTS-LGFTAEEGNILRGYCDVS 61 (70)
Q Consensus 13 fflnGq~~iG~~CC~Ai~~I~~--------~C----WP~Mf~~-~gft~~e~~~Lkg~C~~~ 61 (70)
.|++|.....+.||.+++.+-. .| --.+... .++-..-+.-|=+-|...
T Consensus 15 ~Yl~g~~~P~~~CC~gv~~L~~~a~t~~d~~~lC~cl~~~~~~~~~in~~ra~~LP~~C~v~ 76 (91)
T d1mida_ 15 TYVQGGPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIHNLNLNNAASIPSKCNVN 76 (91)
T ss_dssp HHHTTCSCCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHTTCC
T ss_pred HHHcCCCCCCcchhhhHHHHHHHhcCCCcHHHHHHhhhhhcccCCCcCHHHHHhchHhcCCC
Confidence 5778876699999999988853 23 2222222 245555566677777543
No 3
>d1k8rb_ d.15.1.5 (B:) Protein kinase byr2 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=17.94 E-value=20 Score=21.27 Aligned_cols=15 Identities=0% Similarity=0.040 Sum_probs=11.5
Q ss_pred CCcchhHHHHHHHHH
Q 040009 1 MELKSCSNDIFIFFF 15 (70)
Q Consensus 1 ~~l~~C~~EI~~ffl 15 (70)
+++.||.+||+.-.|
T Consensus 15 vni~gC~~ai~~~~L 29 (95)
T d1k8rb_ 15 VQSRGDYQKTLAIAL 29 (95)
T ss_dssp EECCSCHHHHHHHHH
T ss_pred EEeccCHHHHHHHHH
Confidence 478899999876554
No 4
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=15.85 E-value=19 Score=17.94 Aligned_cols=14 Identities=29% Similarity=0.349 Sum_probs=10.9
Q ss_pred CCCCcchhhhhhcc
Q 040009 44 LGFTAEEGNILRGY 57 (70)
Q Consensus 44 ~gft~~e~~~Lkg~ 57 (70)
-|||+||-.+|...
T Consensus 2 ~~WT~eED~~L~~~ 15 (47)
T d1gv2a2 2 TSWTEEEDRIIYQA 15 (47)
T ss_dssp CCCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 37999998888654
No 5
>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.17 E-value=32 Score=16.54 Aligned_cols=9 Identities=22% Similarity=0.885 Sum_probs=6.9
Q ss_pred hhhcccccC
Q 040009 53 ILRGYCDVS 61 (70)
Q Consensus 53 ~Lkg~C~~~ 61 (70)
-+.|||++.
T Consensus 12 YvqGyCtrg 20 (29)
T d2cqea2 12 YITGFCARA 20 (29)
T ss_dssp TTTTCCSCS
T ss_pred heeeeecCC
Confidence 368999886
No 6
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.84 E-value=30 Score=17.34 Aligned_cols=14 Identities=29% Similarity=0.192 Sum_probs=10.9
Q ss_pred CCCCcchhhhhhcc
Q 040009 44 LGFTAEEGNILRGY 57 (70)
Q Consensus 44 ~gft~~e~~~Lkg~ 57 (70)
-|+|+||-+.|...
T Consensus 3 ~~WT~eED~~L~~~ 16 (52)
T d1w0ta_ 3 QAWLWEEDKNLRSG 16 (52)
T ss_dssp CCCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 37899998888754
No 7
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=11.80 E-value=29 Score=17.44 Aligned_cols=14 Identities=29% Similarity=0.140 Sum_probs=11.4
Q ss_pred CCCCcchhhhhhcc
Q 040009 44 LGFTAEEGNILRGY 57 (70)
Q Consensus 44 ~gft~~e~~~Lkg~ 57 (70)
-|+|+||-..|+..
T Consensus 4 g~WT~eED~~L~~~ 17 (52)
T d1gvda_ 4 GPWTKEEDQRLIKL 17 (52)
T ss_dssp CSCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 47999999988754
No 8
>d1j5ja_ g.3.7.2 (A:) Bekm-1 {Lesser asian scorpion (Buthus eupeus) [TaxId: 34648]}
Probab=11.42 E-value=29 Score=17.31 Aligned_cols=10 Identities=20% Similarity=0.780 Sum_probs=6.8
Q ss_pred hhcchh---hhhc
Q 040009 33 TRNCWP---AMLT 42 (70)
Q Consensus 33 ~~~CWP---~Mf~ 42 (70)
...||| +||-
T Consensus 10 s~qc~pvck~~fg 22 (36)
T d1j5ja_ 10 SYQCFPVCKSRFG 22 (36)
T ss_dssp GGGHHHHHHHHTC
T ss_pred ccchhHHHHHHcC
Confidence 357999 5664
No 9
>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.61 E-value=32 Score=18.31 Aligned_cols=17 Identities=18% Similarity=0.358 Sum_probs=13.2
Q ss_pred CCCCcchhhhhhccccc
Q 040009 44 LGFTAEEGNILRGYCDV 60 (70)
Q Consensus 44 ~gft~~e~~~Lkg~C~~ 60 (70)
.|||.||-.+|=.|=..
T Consensus 3 ~~fT~eeD~~l~~yv~~ 19 (59)
T d1fexa_ 3 IAFTDADDVAILTYVKE 19 (59)
T ss_dssp CCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 68999998888776543
No 10
>d1bdsa_ g.9.1.1 (A:) BDs-I defensin {Sea anemone (Anemonia sulcata) [TaxId: 6108]}
Probab=10.07 E-value=21 Score=18.37 Aligned_cols=8 Identities=63% Similarity=1.730 Sum_probs=5.0
Q ss_pred hhcc--hhhh
Q 040009 33 TRNC--WPAM 40 (70)
Q Consensus 33 ~~~C--WP~M 40 (70)
+.|| ||++
T Consensus 29 tsncykwpni 38 (43)
T d1bdsa_ 29 TSNCYKWPNI 38 (43)
T ss_dssp CCEEEETTEE
T ss_pred ccccccCCcc
Confidence 4566 7765
Done!