BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040013
(586 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3T3Y|A Chain A, Crystal Structure Of Alkb In Complex With Fe(Iii) And
2-(3- Hydroxypicolinomido)acetic Acid
pdb|3T4H|B Chain B, Crystal Structure Of Alkb In Complex With Fe(Iii) And
N-Oxalyl-S-(3- Nitrobenzyl)-L-Cysteine
pdb|3T4V|A Chain A, Crystal Structure Of Alkb In Complex With Fe(Iii) And
N-Oxalyl-S-(2- Napthalenemethyl)-L-Cysteine
Length = 206
Score = 82.4 bits (202), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 73/149 (48%), Gaps = 27/149 (18%)
Query: 437 PIIPVEFHQLVGKAIQDSRALIEKISTGRKDIEAELPCMSPDICIANFYSATGKLGLHQD 496
P +P FH L +A A P PD C+ N Y+ KL LHQD
Sbjct: 80 PAMPQSFHNLCQRAA----------------TAAGYPDFQPDACLINRYAPGAKLSLHQD 123
Query: 497 KDESQESIDKCLPVVSFSIGDSAEFLYGDLRDVANAKKVILESGDVLIFGGKSRRIFHGV 556
KDE D P+VS S+G A F +G L+ K+++LE GDV+++GG+SR +HG+
Sbjct: 124 KDEP----DLRAPIVSVSLGLPAIFQFGGLKRNDPLKRLLLEHGDVVVWGGESRLFYHGI 179
Query: 557 EKIFPDTAPKSLLEETSMRRGRLNLTFRQ 585
+ + P ++ R NLTFRQ
Sbjct: 180 QPLKAGFHPLTI-------DCRYNLTFRQ 201
>pdb|3KHB|A Chain A, Crystal Structure Of Escherichia Coli Alkb With Co(Ii) And
2-Og
pdb|3KHB|B Chain B, Crystal Structure Of Escherichia Coli Alkb With Co(Ii) And
2-Og
Length = 219
Score = 82.4 bits (202), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 73/149 (48%), Gaps = 27/149 (18%)
Query: 437 PIIPVEFHQLVGKAIQDSRALIEKISTGRKDIEAELPCMSPDICIANFYSATGKLGLHQD 496
P +P FH L +A A P PD C+ N Y+ KL LHQD
Sbjct: 93 PAMPQSFHNLCQRAA----------------TAAGYPDFQPDACLINRYAPGAKLSLHQD 136
Query: 497 KDESQESIDKCLPVVSFSIGDSAEFLYGDLRDVANAKKVILESGDVLIFGGKSRRIFHGV 556
KDE D P+VS S+G A F +G L+ K+++LE GDV+++GG+SR +HG+
Sbjct: 137 KDEP----DLRAPIVSVSLGLPAIFQFGGLKRNDPLKRLLLEHGDVVVWGGESRLFYHGI 192
Query: 557 EKIFPDTAPKSLLEETSMRRGRLNLTFRQ 585
+ + P ++ R NLTFRQ
Sbjct: 193 QPLKAGFHPLTI-------DCRYNLTFRQ 214
>pdb|2FD8|A Chain A, Crystal Structure Of Alkb In Complex With Fe(Ii),
2-Oxoglutarate, And Methylated Trinucleotide T-Mea-T
pdb|2FDF|A Chain A, Crystal Structure Of Alkb In Complex With Co(Ii),
2-Oxoglutarate, And Methylated Trinucleotide T-Mea-T
pdb|2FDG|A Chain A, Crystal Structure Of Alkb In Complex With Fe(Ii),
Succinate, And Methylated Trinucleotide T-Mea-T
pdb|2FDH|A Chain A, Crystal Structure Of Alkb In Complex With Mn(Ii),
2-Oxoglutarate, And Methylated Trinucleotide T-Mea-T
pdb|2FDI|A Chain A, Crystal Structure Of Alkb In Complex With Fe(Ii),
2-Oxoglutarate, And Methylated Trinucleotide T-Mea-T
(Air 3 Hours)
pdb|2FDJ|A Chain A, Crystal Structure Of Alkb In Complex With Fe(Ii) And
Succinate
pdb|2FDK|A Chain A, Crystal Structure Of Alkb In Complex With Fe(ii),
2-oxoglutarate, And Methylated Trinucleotide T-mea-t
(air 9 Days)
pdb|3I2O|A Chain A, Crystal Structure Of Alkb In Complex With Fe(Ii),
2-Oxoglutarate And Methylated Trinucleotide T-Mea-T
pdb|3I3M|A Chain A, Crystal Structure Of Alkb In Complex With Mn(Ii),
2-Oxoglutarate And Methylated Trinucleotide T-Mec-T
pdb|3I3Q|A Chain A, Crystal Structure Of Alkb In Complex With Mn(Ii) And
2-Oxoglutarate
pdb|3I3Q|B Chain B, Crystal Structure Of Alkb In Complex With Mn(Ii) And
2-Oxoglutarate
pdb|3I49|A Chain A, Crystal Structure Of Alkb In Complex With Fe(Ii),
2-Oxoglutarate And Methylated Trinucleotide T-Mec-T
Length = 211
Score = 82.4 bits (202), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 73/149 (48%), Gaps = 27/149 (18%)
Query: 437 PIIPVEFHQLVGKAIQDSRALIEKISTGRKDIEAELPCMSPDICIANFYSATGKLGLHQD 496
P +P FH L +A A P PD C+ N Y+ KL LHQD
Sbjct: 80 PAMPQSFHNLCQRAA----------------TAAGYPDFQPDACLINRYAPGAKLSLHQD 123
Query: 497 KDESQESIDKCLPVVSFSIGDSAEFLYGDLRDVANAKKVILESGDVLIFGGKSRRIFHGV 556
KDE D P+VS S+G A F +G L+ K+++LE GDV+++GG+SR +HG+
Sbjct: 124 KDEP----DLRAPIVSVSLGLPAIFQFGGLKRNDPLKRLLLEHGDVVVWGGESRLFYHGI 179
Query: 557 EKIFPDTAPKSLLEETSMRRGRLNLTFRQ 585
+ + P ++ R NLTFRQ
Sbjct: 180 QPLKAGFHPLTI-------DCRYNLTFRQ 201
>pdb|3O1M|A Chain A, Iron-Catalyzed Oxidation Intermediates Captured In A Dna
Repair Dioxygenase
pdb|3O1O|A Chain A, Iron-Catalyzed Oxidation Intermediates Captured In A Dna
Repair Dioxygenase
pdb|3O1P|A Chain A, Iron-Catalyzed Oxidation Intermediates Captured In A Dna
Repair Dioxygenase
pdb|3O1R|A Chain A, Iron-Catalyzed Oxidation Intermediates Captured In A Dna
Repair Dioxygenase
pdb|3O1S|A Chain A, Iron-Catalyzed Oxidation Intermediates Captured In A Dna
Repair Dioxygenase
pdb|3O1T|A Chain A, Iron-Catalyzed Oxidation Intermediates Captured In A Dna
Repair Dioxygenase
pdb|3O1U|A Chain A, Iron-Catalyzed Oxidation Intermediates Captured In A Dna
Repair Dioxygenase
pdb|3O1V|A Chain A, Iron-Catalyzed Oxidation Intermediates Captured In A Dna
Repair Dioxygenase
Length = 206
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 73/149 (48%), Gaps = 27/149 (18%)
Query: 437 PIIPVEFHQLVGKAIQDSRALIEKISTGRKDIEAELPCMSPDICIANFYSATGKLGLHQD 496
P +P FH L +A A P PD C+ N Y+ KL LHQD
Sbjct: 80 PAMPQSFHNLCQRAA----------------TAAGYPDFQPDACLINRYAPGAKLCLHQD 123
Query: 497 KDESQESIDKCLPVVSFSIGDSAEFLYGDLRDVANAKKVILESGDVLIFGGKSRRIFHGV 556
KDE D P+VS S+G A F +G L+ K+++LE GDV+++GG+SR +HG+
Sbjct: 124 KDEP----DLRAPIVSVSLGLPAIFQFGGLKRNDPLKRLLLEHGDVVVWGGESRLFYHGI 179
Query: 557 EKIFPDTAPKSLLEETSMRRGRLNLTFRQ 585
+ + P ++ R NLTFRQ
Sbjct: 180 QPLKAGFHPLTI-------DCRYNLTFRQ 201
>pdb|3BIE|A Chain A, X-Ray Structure Of E Coli Alkb Bound To Dsdna Containing
1meaT WITH Mn And 2kg
Length = 202
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 73/149 (48%), Gaps = 27/149 (18%)
Query: 437 PIIPVEFHQLVGKAIQDSRALIEKISTGRKDIEAELPCMSPDICIANFYSATGKLGLHQD 496
P +P FH L +A A P PD C+ N Y+ KL LHQD
Sbjct: 78 PAMPQSFHNLCQRAA----------------TAAGYPDFQPDACLINRYAPGAKLCLHQD 121
Query: 497 KDESQESIDKCLPVVSFSIGDSAEFLYGDLRDVANAKKVILESGDVLIFGGKSRRIFHGV 556
KDE D P+VS S+G A F +G L+ K+++LE GDV+++GG+SR +HG+
Sbjct: 122 KDEP----DLRAPIVSVSLGLPAIFQFGGLKRNDPLKRLLLEHGDVVVWGGESRLFYHGI 177
Query: 557 EKIFPDTAPKSLLEETSMRRGRLNLTFRQ 585
+ + P ++ R NLTFRQ
Sbjct: 178 QPLKAGFHPLTI-------DCRYNLTFRQ 199
>pdb|3BI3|A Chain A, X-Ray Structure Of Alkb Protein Bound To Dsdna Containing
1meaA WITH Cofactors
Length = 201
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 73/149 (48%), Gaps = 27/149 (18%)
Query: 437 PIIPVEFHQLVGKAIQDSRALIEKISTGRKDIEAELPCMSPDICIANFYSATGKLGLHQD 496
P +P FH L +A A P PD C+ N Y+ KL LHQD
Sbjct: 78 PAMPQSFHNLCQRAA----------------TAAGYPDFQPDACLINRYAPGAKLCLHQD 121
Query: 497 KDESQESIDKCLPVVSFSIGDSAEFLYGDLRDVANAKKVILESGDVLIFGGKSRRIFHGV 556
KDE D P+VS S+G A F +G L+ K+++LE GDV+++GG+SR +HG+
Sbjct: 122 KDEP----DLRAPIVSVSLGLPAIFQFGGLKRNDPLKRLLLEHGDVVVWGGESRLFYHGI 177
Query: 557 EKIFPDTAPKSLLEETSMRRGRLNLTFRQ 585
+ + P ++ R NLTFRQ
Sbjct: 178 QPLKAGFHPLTI-------DCRYNLTFRQ 199
>pdb|3KHC|A Chain A, Crystal Structure Of Escherichia Coli Alkb In Complex With
Ssdna Containing A 1-Methylguanine Lesion
pdb|3KHC|B Chain B, Crystal Structure Of Escherichia Coli Alkb In Complex With
Ssdna Containing A 1-Methylguanine Lesion
Length = 219
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 72/149 (48%), Gaps = 27/149 (18%)
Query: 437 PIIPVEFHQLVGKAIQDSRALIEKISTGRKDIEAELPCMSPDICIANFYSATGKLGLHQD 496
P +P FH L +A A P PD C+ N Y+ KL LHQD
Sbjct: 93 PAMPQSFHNLCQRAA----------------TAAGYPDFQPDACLINRYAPGAKLSLHQD 136
Query: 497 KDESQESIDKCLPVVSFSIGDSAEFLYGDLRDVANAKKVILESGDVLIFGGKSRRIFHGV 556
K E D P+VS S+G A F +G L+ K+++LE GDV+++GG+SR +HG+
Sbjct: 137 KAEP----DLRAPIVSVSLGLPAIFQFGGLKRNDPLKRLLLEHGDVVVWGGESRLFYHGI 192
Query: 557 EKIFPDTAPKSLLEETSMRRGRLNLTFRQ 585
+ + P ++ R NLTFRQ
Sbjct: 193 QPLKAGFHPLTI-------DCRYNLTFRQ 214
>pdb|3BKZ|A Chain A, X-Ray Structure Of E Coli Alkb Crosslinked To Dsdna In The
Active Site
Length = 201
Score = 79.0 bits (193), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 72/149 (48%), Gaps = 27/149 (18%)
Query: 437 PIIPVEFHQLVGKAIQDSRALIEKISTGRKDIEAELPCMSPDICIANFYSATGKLGLHQD 496
P +P FH L +A A P PD C+ N Y+ KL LHQD
Sbjct: 77 PAMPQSFHNLCQRAA----------------TAAGYPDFQPDACLINRYAPGAKLSLHQD 120
Query: 497 KDESQESIDKCLPVVSFSIGDSAEFLYGDLRDVANAKKVILESGDVLIFGGKSRRIFHGV 556
K E D P+VS S+G A F +G L+ K+++LE GDV+++GG+SR +HG+
Sbjct: 121 KCEP----DLRAPIVSVSLGLPAIFQFGGLKRNDPLKRLLLEHGDVVVWGGESRLFYHGI 176
Query: 557 EKIFPDTAPKSLLEETSMRRGRLNLTFRQ 585
+ + P ++ R NLTFRQ
Sbjct: 177 QPLKAGFHPLTI-------DCRYNLTFRQ 198
>pdb|3NTD|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C531s Mutant
pdb|3NTD|B Chain B, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C531s Mutant
Length = 565
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 6/85 (7%)
Query: 227 QPECIVVSDLVTGDVSHS-FSGH-----SDSKNMHLDEIGIQIGETPEKKEEDDATSKLN 280
Q + V SD D +H GH S+ + + D + + IG PE + DA +
Sbjct: 221 QVQTHVASDAAGEDTAHQHIKGHLSLTLSNGELLETDLLIMAIGVRPETQLARDAGLAIG 280
Query: 281 FSGKLKVGHMQESVPPAIADTKDQV 305
G +KV M ++ PAI D V
Sbjct: 281 ELGGIKVNAMMQTSDPAIYAVGDAV 305
>pdb|1MFG|A Chain A, The Structure Of Erbin Pdz Domain Bound To The Carboxy-
Terminal Tail Of The Erbb2 Receptor
pdb|1MFL|A Chain A, The Structure Of Erbin Pdz Domain Bound To The Carboxy-
Terminal Tail Of The Erbb2 Receptor
Length = 95
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 8 GGFSGR-SPLRPD--GYYSHRNRHVGGASKPFSNEDRMSQGRGKHPHHISHGSGSKHFK 63
GG GR +P RPD G + R + G ASK D++ Q G +I HG K
Sbjct: 21 GGVGGRGNPFRPDDDGIFVTRVQPEGPASKLLQPGDKIIQANGYSFINIEHGQAVSLLK 79
>pdb|1TI2|B Chain B, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici
pdb|1TI2|D Chain D, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici
pdb|1TI2|F Chain F, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici
pdb|1TI2|H Chain H, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici
pdb|1TI2|J Chain J, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici
pdb|1TI2|L Chain L, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici
pdb|1TI4|B Chain B, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici Complexed
With Pyrogallol
pdb|1TI4|D Chain D, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici Complexed
With Pyrogallol
pdb|1TI4|F Chain F, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici Complexed
With Pyrogallol
pdb|1TI4|H Chain H, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici Complexed
With Pyrogallol
pdb|1TI4|J Chain J, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici Complexed
With Pyrogallol
pdb|1TI4|L Chain L, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici Complexed
With Pyrogallol
pdb|1TI6|B Chain B, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici Complexed
With Inhibitor 1,2,4,5-Tetrahydroxy-Benzene
pdb|1TI6|D Chain D, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici Complexed
With Inhibitor 1,2,4,5-Tetrahydroxy-Benzene
pdb|1TI6|F Chain F, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici Complexed
With Inhibitor 1,2,4,5-Tetrahydroxy-Benzene
pdb|1TI6|H Chain H, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici Complexed
With Inhibitor 1,2,4,5-Tetrahydroxy-Benzene
pdb|1TI6|J Chain J, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici Complexed
With Inhibitor 1,2,4,5-Tetrahydroxy-Benzene
pdb|1TI6|L Chain L, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici Complexed
With Inhibitor 1,2,4,5-Tetrahydroxy-Benzene
pdb|1VLD|N Chain N, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici
pdb|1VLD|P Chain P, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici
pdb|1VLD|R Chain R, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici
pdb|1VLD|T Chain T, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici
pdb|1VLD|V Chain V, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici
pdb|1VLD|X Chain X, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici
pdb|1VLE|N Chain N, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici Complexed
With Pyrogallol
pdb|1VLE|P Chain P, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici Complexed
With Pyrogallol
pdb|1VLE|R Chain R, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici Complexed
With Pyrogallol
pdb|1VLE|T Chain T, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici Complexed
With Pyrogallol
pdb|1VLE|V Chain V, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici Complexed
With Pyrogallol
pdb|1VLE|X Chain X, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici Complexed
With Pyrogallol
pdb|1VLF|N Chain N, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici Complexed
With Inhibitor 1,2,4,5-Tetrahydroxy-Benzene
pdb|1VLF|P Chain P, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici Complexed
With Inhibitor 1,2,4,5-Tetrahydroxy-Benzene
pdb|1VLF|R Chain R, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici Complexed
With Inhibitor 1,2,4,5-Tetrahydroxy-Benzene
pdb|1VLF|T Chain T, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici Complexed
With Inhibitor 1,2,4,5-Tetrahydroxy-Benzene
pdb|1VLF|V Chain V, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici Complexed
With Inhibitor 1,2,4,5-Tetrahydroxy-Benzene
pdb|1VLF|X Chain X, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici Complexed
With Inhibitor 1,2,4,5-Tetrahydroxy-Benzene
Length = 274
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 70 FVYRPKKTSPDVISNSLEAEGSNTKHPECFEAPDSLYGN 108
FVY KT+P+ ++ +E EG PE P Y N
Sbjct: 152 FVYEFLKTTPEAMAKKVEEEGLEVIKPELGTKPRVYYKN 190
>pdb|3MYD|A Chain A, Structure Of The Cytoplasmic Domain Of Flha From
Helicobacter Pylori
Length = 365
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 76/168 (45%), Gaps = 19/168 (11%)
Query: 414 LGKNWDPETSQYGTSRPTDGAVPPIIPVEFHQLVGKAIQDSRALIEKISTGRKDIEAELP 473
L K++ P + PT GA+ ++ H+ + I+D ++E I+ DI P
Sbjct: 184 LAKDY-PTIVEESKKIPT-GAIRSVLQALLHEKI--PIKDMLTILETIT----DIA---P 232
Query: 474 CMSPDICIANFYSATGKLGLHQDKDESQESIDKCLPVVSFSIGDSAEFLYGDLRDVANAK 533
+ D+ N + + L + + +S D L ++FS DS +FL LR+ +K
Sbjct: 233 LVQNDV---NILTEQVRARLSRVITNAFKSEDGRLKFLTFS-TDSEQFLLNKLRENGTSK 288
Query: 534 KVILESGDVL-IFGGKSRRIFHGVEKIFPDTAPKSLLEETSMRRGRLN 580
++L G++ + G S ++K AP L+ E ++R+ N
Sbjct: 289 SLLLNVGELQKLIEGVSEEAMKVLQK---GIAPVILIVEPNLRKALSN 333
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.133 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,183,488
Number of Sequences: 62578
Number of extensions: 861428
Number of successful extensions: 1283
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1266
Number of HSP's gapped (non-prelim): 18
length of query: 586
length of database: 14,973,337
effective HSP length: 104
effective length of query: 482
effective length of database: 8,465,225
effective search space: 4080238450
effective search space used: 4080238450
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (25.4 bits)