BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040013
(586 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P05050|ALKB_ECOLI Alpha-ketoglutarate-dependent dioxygenase AlkB OS=Escherichia coli
(strain K12) GN=alkB PE=1 SV=1
Length = 216
Score = 82.4 bits (202), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 73/149 (48%), Gaps = 27/149 (18%)
Query: 437 PIIPVEFHQLVGKAIQDSRALIEKISTGRKDIEAELPCMSPDICIANFYSATGKLGLHQD 496
P +P FH L +A A P PD C+ N Y+ KL LHQD
Sbjct: 90 PAMPQSFHNLCQRAA----------------TAAGYPDFQPDACLINRYAPGAKLSLHQD 133
Query: 497 KDESQESIDKCLPVVSFSIGDSAEFLYGDLRDVANAKKVILESGDVLIFGGKSRRIFHGV 556
KDE D P+VS S+G A F +G L+ K+++LE GDV+++GG+SR +HG+
Sbjct: 134 KDEP----DLRAPIVSVSLGLPAIFQFGGLKRNDPLKRLLLEHGDVVVWGGESRLFYHGI 189
Query: 557 EKIFPDTAPKSLLEETSMRRGRLNLTFRQ 585
+ + P ++ R NLTFRQ
Sbjct: 190 QPLKAGFHPLTI-------DCRYNLTFRQ 211
>sp|P37462|ALKB_SALTY Alpha-ketoglutarate-dependent dioxygenase AlkB OS=Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
GN=alkB PE=3 SV=2
Length = 216
Score = 80.1 bits (196), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 64/118 (54%), Gaps = 11/118 (9%)
Query: 468 IEAELPCMSPDICIANFYSATGKLGLHQDKDESQESIDKCLPVVSFSIGDSAEFLYGDLR 527
I A PD C+ N Y+ KL LHQDKDE D P+VS S+G A F +G LR
Sbjct: 105 IAAGYASFQPDACLINRYAPGAKLSLHQDKDEP----DLRAPIVSVSLGVPAVFQFGGLR 160
Query: 528 DVANAKKVILESGDVLIFGGKSRRIFHGVEKIFPDTAPKSLLEETSMRRGRLNLTFRQ 585
++++LE GD++++GG+SR +HG++ + P + R NLTFRQ
Sbjct: 161 RSDPIQRILLEHGDIVVWGGESRLFYHGIQPLKAGFHPMT-------GEFRYNLTFRQ 211
>sp|P0CAT7|ALKB_CAUCR Alpha-ketoglutarate-dependent dioxygenase AlkB homolog
OS=Caulobacter crescentus (strain ATCC 19089 / CB15)
GN=alkB PE=3 SV=1
Length = 220
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 63/113 (55%), Gaps = 10/113 (8%)
Query: 473 PCMSPDICIANFYSATGKLGLHQDKDESQESIDKCLPVVSFSIGDSAEFLYGDLRDVANA 532
P PD C+ N Y ++GLHQD+DE+ D PV+S S+GD+A F G +
Sbjct: 114 PETPPDSCLVNLYRDGARMGLHQDRDEA----DPRFPVLSISLGDTAVFRIGGVNRKDPT 169
Query: 533 KKVILESGDVLIFGGKSRRIFHGVEKIFPDTAPKSLLEETSMRRGRLNLTFRQ 585
+ + L SGDV G +R FHGV++I P ++ SL+ GR+NLT R+
Sbjct: 170 RSLRLASGDVCRLLGPARLAFHGVDRILPGSS--SLVPGG----GRINLTLRR 216
>sp|B8GWW6|ALKB_CAUCN Alpha-ketoglutarate-dependent dioxygenase AlkB homolog
OS=Caulobacter crescentus (strain NA1000 / CB15N)
GN=alkB PE=3 SV=2
Length = 220
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 63/113 (55%), Gaps = 10/113 (8%)
Query: 473 PCMSPDICIANFYSATGKLGLHQDKDESQESIDKCLPVVSFSIGDSAEFLYGDLRDVANA 532
P PD C+ N Y ++GLHQD+DE+ D PV+S S+GD+A F G +
Sbjct: 114 PETPPDSCLVNLYRDGARMGLHQDRDEA----DPRFPVLSISLGDTAVFRIGGVNRKDPT 169
Query: 533 KKVILESGDVLIFGGKSRRIFHGVEKIFPDTAPKSLLEETSMRRGRLNLTFRQ 585
+ + L SGDV G +R FHGV++I P ++ SL+ GR+NLT R+
Sbjct: 170 RSLRLASGDVCRLLGPARLAFHGVDRILPGSS--SLVPGG----GRINLTLRR 216
>sp|O60066|ALKBH_SCHPO Alpha-ketoglutarate-dependent dioxygenase abh1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=abh1 PE=2 SV=3
Length = 302
Score = 68.9 bits (167), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 79/182 (43%), Gaps = 29/182 (15%)
Query: 409 LKMMCLGKNWDPETSQYGTSRPTDGAVPPIIPVEFHQLVGKAIQDSRALIEKISTGRKDI 468
L+ + LG+ +D T +Y D + P P + V K +++S +
Sbjct: 140 LRWVTLGEQYDWTTKEY-----PDPSKSPGFPKDLGDFVEKVVKESTDFLH--------- 185
Query: 469 EAELPCMSPDICIANFYSATGKLGLHQDKDESQESIDKCLPVVSFSIGDSAEFLYGDLRD 528
+ I NFYS L H DES+E D LP++S S+G +L G
Sbjct: 186 ------WKAEAAIVNFYSPGDTLSAH--IDESEE--DLTLPLISLSMGLDCIYLIGTESR 235
Query: 529 VANAKKVILESGDVLIFGGKSRRIFHGVEKIFPDTAPKSLLE-----ETSMRRGRLNLTF 583
+ L SGDV+I G SR+ FH V KI P++ P LL + + R R+N
Sbjct: 236 SEKPSALRLHSGDVVIMTGTSRKAFHAVPKIIPNSTPNYLLTGNKAWDGWISRKRVNFNV 295
Query: 584 RQ 585
RQ
Sbjct: 296 RQ 297
>sp|Q54N08|ALKB_DICDI Alpha-ketoglutarate-dependent dioxygenase alkB OS=Dictyostelium
discoideum GN=alkB PE=2 SV=1
Length = 393
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 66/120 (55%), Gaps = 11/120 (9%)
Query: 453 DSRALIEKISTGRKDIEAELPCMSPDICIANFYSATGKLGLHQDKDESQESIDKCLPVVS 512
D + L++KI+ K + NFYS +G H D ++++ ++K P++S
Sbjct: 242 DLQELVQKIAIATK-----FDPYVAEAATVNFYSEDSIMGGHLD--DAEQEMEK--PIIS 292
Query: 513 FSIGDSAEFLYG-DLRDVANAKKVILESGDVLIFGGKSRRIFHGVEKIFPDTAPKSLLEE 571
S G +A FL G + RD+A + + SGD++I GG+SR +HGV KI ++ L++E
Sbjct: 293 ISFGSTAVFLMGAETRDIAPVP-LFIRSGDIVIMGGRSRYCYHGVAKIVENSFDLGLIDE 351
>sp|P0CB42|ALKB1_MOUSE Alkylated DNA repair protein alkB homolog 1 OS=Mus musculus
GN=Alkbh1 PE=1 SV=1
Length = 389
Score = 60.1 bits (144), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 60/132 (45%), Gaps = 31/132 (23%)
Query: 481 IANFYSATGKLGLHQDKDESQESIDKCLPVVSFSIGDSAEFLYGDLRDVANAKKVILESG 540
I N+Y LG+H D+ E +D P++SFS G SA FL G L+ + + SG
Sbjct: 218 ILNYYRLDSTLGIHVDRSE----LDHSKPLLSFSFGQSAIFLLGGLKRDEAPTAMFMHSG 273
Query: 541 DVLIFGGKSRRIFHGVEKIFP----DTAP-------------KSLLE----------ETS 573
D+++ G SR + H V ++ P + P SL+E T
Sbjct: 274 DIMVMSGFSRLLNHAVPRVLPHPDGECLPHCLETPLPAVLPSNSLVEPCSVEDWQVCATY 333
Query: 574 MRRGRLNLTFRQ 585
+R R+N+T RQ
Sbjct: 334 LRTARVNMTVRQ 345
>sp|Q13686|ALKB1_HUMAN Alkylated DNA repair protein alkB homolog 1 OS=Homo sapiens
GN=ALKBH1 PE=1 SV=2
Length = 389
Score = 59.7 bits (143), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Query: 481 IANFYSATGKLGLHQDKDESQESIDKCLPVVSFSIGDSAEFLYGDLRDVANAKKVILESG 540
I N+Y LG+H D+ E +D P++SFS G SA FL G L+ + + SG
Sbjct: 218 ILNYYRLDSTLGIHVDRSE----LDHSKPLLSFSFGQSAIFLLGGLQRDEAPTAMFMHSG 273
Query: 541 DVLIFGGKSRRIFHGVEKIFPD 562
D++I G SR + H V ++ P+
Sbjct: 274 DIMIMSGFSRLLNHAVPRVLPN 295
>sp|Q9SA98|ALKBH_ARATH Alpha-ketoglutarate-dependent dioxygenase alkB OS=Arabidopsis
thaliana GN=At1g11780 PE=2 SV=2
Length = 345
Score = 50.4 bits (119), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 477 PDICIANFYSATGKLGLHQDKDESQESIDKCLPVVSFSIGDSAEFLYGDLRDVANAKKVI 536
P+ I N++ LG H D E+ D P+VS S+G A FL G +
Sbjct: 226 PEGAIVNYFGIGDTLGGHLDDMEA----DWSKPIVSMSLGCKAIFLLGGKSKDDPPHAMY 281
Query: 537 LESGDVLIFGGKSRRIFHGVEKIF 560
L SGDV++ G++R FHG+ +IF
Sbjct: 282 LRSGDVVLMAGEARECFHGIPRIF 305
>sp|Q5JET0|DP2L_PYRKO DNA polymerase II large subunit OS=Pyrococcus kodakaraensis (strain
ATCC BAA-918 / JCM 12380 / KOD1) GN=polC PE=3 SV=1
Length = 1798
Score = 33.9 bits (76), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 55/136 (40%), Gaps = 11/136 (8%)
Query: 196 KQPECIGASDSKTQLPDVSPNSLEAGVSCMKQPECIVVSDLVTGDVSHSFSGHSDSKNMH 255
+Q CI D KT +V P KQ + S + + +GHS+ KN +
Sbjct: 1658 RQRICITEKDIKTLFENVFPE---------KQRTLMGFSADICEKMVKERTGHSNGKNGY 1708
Query: 256 LDEIGIQIGETPEKKEEDDATSKLNFSGKLKVGHMQESVPPAIADTKDQVSLEEGPNNFL 315
LDE + G+ +K SKL+ GK + + P K+ S E N
Sbjct: 1709 LDEFNGKNGKASKKS--GSLASKLSGKGKEPSKKKESAKPKRSEKVKNLTSFEAAAKNEQ 1766
Query: 316 SIGVSENSVQQAIDKP 331
+ G + N+ + +KP
Sbjct: 1767 ARGTAGNAKKAESEKP 1782
>sp|Q73GH2|FENR_WOLPM Ferredoxin--NADP reductase OS=Wolbachia pipientis wMel GN=WD_0982
PE=3 SV=1
Length = 338
Score = 32.7 bits (73), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 30/137 (21%), Positives = 56/137 (40%), Gaps = 25/137 (18%)
Query: 420 PETSQYGTSRPTDGAVPPIIPVEFHQLVGKAIQDSRALIEKISTG-RKDIEAELPCMSPD 478
PET S DG + ++P + H+L G Q S +++ I++ K+I A+
Sbjct: 189 PETRNKLESLEIDGKIELVVPYQLHELAGGNGQLSAVIVKNIASKEEKEISADF------ 242
Query: 479 ICIANFYSATGKLGLHQDKDESQESIDKCLPVVSFSIGDSAEFLYGDLRDVANAKKVILE 538
+ F+ + LG P+ ++ I + D + ++ I
Sbjct: 243 --LLPFFGLSMNLG----------------PINNWGIQLEHSRIVVDPATLKTSRDRIYA 284
Query: 539 SGDVLIFGGKSRRIFHG 555
GD+ I+ GK + I +G
Sbjct: 285 IGDIAIYSGKLKLILNG 301
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.133 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 238,673,087
Number of Sequences: 539616
Number of extensions: 10860713
Number of successful extensions: 17643
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 17556
Number of HSP's gapped (non-prelim): 93
length of query: 586
length of database: 191,569,459
effective HSP length: 123
effective length of query: 463
effective length of database: 125,196,691
effective search space: 57966067933
effective search space used: 57966067933
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)