Query 040013
Match_columns 586
No_of_seqs 151 out of 1019
Neff 3.4
Searched_HMMs 46136
Date Fri Mar 29 04:13:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040013.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040013hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK15401 alpha-ketoglutarate-d 100.0 2.8E-47 6.1E-52 370.7 21.1 197 361-586 14-213 (213)
2 PF13532 2OG-FeII_Oxy_2: 2OG-F 100.0 1.2E-37 2.7E-42 287.0 11.8 191 366-584 1-194 (194)
3 TIGR00568 alkb DNA alkylation 100.0 9.9E-37 2.1E-41 287.2 16.7 161 370-556 1-169 (169)
4 COG3145 AlkB Alkylated DNA rep 100.0 2E-31 4.4E-36 257.0 16.3 181 362-581 12-194 (194)
5 KOG2731 DNA alkylation damage 99.9 9.1E-23 2E-27 210.8 3.6 304 205-557 67-378 (378)
6 KOG3200 Uncharacterized conser 99.7 7.8E-18 1.7E-22 162.0 10.1 180 364-586 11-214 (224)
7 KOG2731 DNA alkylation damage 99.7 1E-17 2.2E-22 173.8 5.1 158 407-586 163-350 (378)
8 KOG4176 Uncharacterized conser 99.6 2.2E-15 4.9E-20 155.5 12.1 175 366-586 129-304 (323)
9 KOG3959 2-Oxoglutarate- and ir 98.5 3.8E-08 8.2E-13 99.3 3.0 173 362-585 69-276 (306)
10 smart00702 P4Hc Prolyl 4-hydro 97.5 0.007 1.5E-07 56.3 16.1 91 475-583 80-175 (178)
11 PF12933 FTO_NTD: FTO catalyti 97.1 0.0016 3.4E-08 66.6 8.4 93 472-584 133-249 (253)
12 PRK05467 Fe(II)-dependent oxyg 97.1 0.011 2.4E-07 59.4 14.1 163 367-583 2-174 (226)
13 PF03171 2OG-FeII_Oxy: 2OG-Fe( 96.8 0.0012 2.6E-08 55.6 3.4 83 477-585 1-96 (98)
14 PF13640 2OG-FeII_Oxy_3: 2OG-F 96.5 0.0019 4.2E-08 54.4 3.1 83 480-583 1-97 (100)
15 TIGR01762 chlorin-enz chlorina 93.9 1.5 3.4E-05 45.2 14.3 28 362-389 11-38 (288)
16 TIGR02408 ectoine_ThpD ectoine 90.7 4 8.8E-05 41.5 12.4 29 361-389 24-52 (277)
17 PF09859 Oxygenase-NA: Oxygena 88.8 2.2 4.8E-05 42.1 8.4 81 478-561 62-160 (173)
18 PF12851 Tet_JBP: Oxygenase do 85.6 3 6.5E-05 40.3 7.3 80 490-583 86-167 (171)
19 COG3128 PiuC Uncharacterized i 83.5 22 0.00048 36.3 12.4 75 479-559 83-167 (229)
20 TIGR02466 conserved hypothetic 80.5 13 0.00028 37.2 9.6 121 441-583 64-196 (201)
21 PF08007 Cupin_4: Cupin superf 71.3 6.5 0.00014 41.0 5.1 69 478-559 112-199 (319)
22 PF13759 2OG-FeII_Oxy_5: Putat 70.4 3.5 7.7E-05 35.7 2.5 37 531-583 64-100 (101)
23 KOG0143 Iron/ascorbate family 59.2 1.1E+02 0.0024 32.5 11.4 106 432-549 122-242 (322)
24 PLN00052 prolyl 4-hydroxylase; 55.8 71 0.0015 34.1 9.3 26 364-389 53-78 (310)
25 COG2850 Uncharacterized conser 52.4 27 0.00059 38.5 5.6 76 471-558 112-202 (383)
26 PF00432 Prenyltrans: Prenyltr 50.3 3.9 8.5E-05 30.8 -0.7 22 2-23 12-33 (44)
27 cd02894 GGTase-II Geranylgeran 50.0 6.9 0.00015 39.9 0.8 24 2-25 207-230 (287)
28 PLN02216 protein SRG1 49.5 1.3E+02 0.0028 32.3 10.1 60 478-549 210-275 (357)
29 PLN02947 oxidoreductase 43.7 1.7E+02 0.0037 31.7 10.0 59 478-549 225-289 (374)
30 PLN03001 oxidoreductase, 2OG-F 43.3 1.3E+02 0.0029 30.9 8.8 58 479-549 117-180 (262)
31 PLN02750 oxidoreductase, 2OG-F 42.6 2.1E+02 0.0045 30.4 10.3 61 478-549 193-259 (345)
32 PLN02515 naringenin,2-oxogluta 40.3 1.7E+02 0.0037 31.5 9.4 61 478-549 195-261 (358)
33 PLN02639 oxidoreductase, 2OG-F 38.7 2.2E+02 0.0048 30.2 9.7 60 478-549 190-255 (337)
34 PLN03201 RAB geranylgeranyl tr 38.3 14 0.00031 38.7 1.0 24 2-25 211-234 (316)
35 PLN02904 oxidoreductase 38.2 2E+02 0.0043 30.9 9.4 58 479-549 209-272 (357)
36 TIGR00568 alkb DNA alkylation 36.9 38 0.00083 33.0 3.6 20 531-550 122-141 (169)
37 PRK10572 DNA-binding transcrip 36.6 1.3E+02 0.0028 30.1 7.4 72 470-553 13-87 (290)
38 PLN02156 gibberellin 2-beta-di 34.7 3.4E+02 0.0074 29.0 10.4 60 478-549 178-245 (335)
39 PLN02758 oxidoreductase, 2OG-F 31.1 2E+02 0.0043 30.9 8.1 59 479-549 212-277 (361)
40 KOG1591 Prolyl 4-hydroxylase a 30.2 3.6E+02 0.0078 28.8 9.6 69 471-545 169-250 (289)
41 COG3826 Uncharacterized protei 29.7 2.2E+02 0.0048 29.3 7.6 79 479-561 125-222 (236)
42 PLN02912 oxidoreductase, 2OG-F 29.5 3.7E+02 0.0081 28.8 9.7 59 478-549 197-261 (348)
43 PLN02365 2-oxoglutarate-depend 29.3 2.7E+02 0.0059 29.0 8.5 61 478-549 149-216 (300)
44 cd02893 FTase Protein farnesyl 29.1 23 0.00049 36.8 0.7 23 2-24 205-228 (299)
45 PLN02393 leucoanthocyanidin di 27.1 2.4E+02 0.0052 30.3 7.8 59 479-549 214-278 (362)
46 cd02895 GGTase-I Geranylgerany 27.0 33 0.00072 35.8 1.4 24 2-25 227-250 (307)
47 PF13621 Cupin_8: Cupin-like d 26.9 38 0.00082 32.3 1.7 26 531-559 207-232 (251)
48 PLN02984 oxidoreductase, 2OG-F 26.1 6.7E+02 0.015 26.9 10.9 59 478-549 200-264 (341)
49 PLN02485 oxidoreductase 26.0 5.9E+02 0.013 26.8 10.3 60 479-549 185-254 (329)
50 PLN02710 farnesyltranstransfer 25.1 32 0.0007 38.4 1.0 23 2-24 250-272 (439)
51 cd02890 PTase Protein prenyltr 24.9 35 0.00076 34.3 1.1 24 2-25 205-229 (286)
52 PLN02704 flavonol synthase 23.4 2.8E+02 0.0061 29.4 7.4 58 479-549 200-263 (335)
53 KOG1324 Dihydrofolate reductas 22.0 83 0.0018 31.9 3.0 28 541-583 47-74 (190)
54 PLN02403 aminocyclopropanecarb 21.3 2.5E+02 0.0054 29.6 6.5 18 480-497 155-178 (303)
55 PLN02299 1-aminocyclopropane-1 20.8 4.4E+02 0.0096 27.9 8.3 58 479-549 159-223 (321)
No 1
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional
Probab=100.00 E-value=2.8e-47 Score=370.68 Aligned_cols=197 Identities=28% Similarity=0.498 Sum_probs=175.1
Q ss_pred cccCCceEEEcCCCCHHHHHHHHHHHHHcCCCCCCCcCCcccCCceeEEEEEecC-CcccCC--CCccCCCCCCCCCCCC
Q 040013 361 LSIGAKSNYIEAWYGITEEVKIVKICRDLGLGPGGFYQPGYRDGANLYLKMMCLG-KNWDPE--TSQYGTSRPTDGAVPP 437 (586)
Q Consensus 361 ~~~~pGLvLLpdFLS~eEQ~~LVk~c~elgl~P~gw~qP~~r~GkkmkLR~~tLG-y~WD~D--TyrYs~~~P~dGap~p 437 (586)
....+|++++++|. .++|++|+++|++... ..+|+++.++.|+.|++||++|| ++|..| .|+|++.++.++.+||
T Consensus 14 ~~~~~g~~~~~~~~-~~~~~~l~~~~~~~~~-~~p~~~~~~~gg~~msv~mt~~G~~~W~~d~~~YrYs~~~~~~~~pwp 91 (213)
T PRK15401 14 EPLAPGAVLLRGFA-LAAAEALLAAIEAVAA-QAPFRHMVTPGGYTMSVAMTNCGALGWVTDRRGYRYSPIDPLTGKPWP 91 (213)
T ss_pred eecCCCcEEeCCCC-HHHHHHHHHHHHHHHh-cCCccceecCCCCcceeEEeccccceEecCCCCcccCCcCCCCCCCCC
Confidence 34678999999996 8889999999999633 37899999988999999999999 899877 5788887778899999
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhhccCcccccccCCCCCCCEEEEeecCCCCCccccCCCccccccccCCCCEEEEecCC
Q 040013 438 IIPVEFHQLVGKAIQDSRALIEKISTGRKDIEAELPCMSPDICIANFYSATGKLGLHQDKDESQESIDKCLPVVSFSIGD 517 (586)
Q Consensus 438 piPe~L~eLveraa~~A~~L~~~i~~g~~~~e~~~p~~~PDacLVNfY~pGd~MGwH~Dd~Ese~sL~~~~PIVSLSLGa 517 (586)
+||++|.+|+++++..+ +++.+.||+||||||++|++||||+|++|.+ ++.||||||||+
T Consensus 92 ~~P~~l~~L~~~~~~~~----------------~~~~~~p~a~LvN~Y~~G~~mg~H~D~~E~~----~~~pI~SvSLG~ 151 (213)
T PRK15401 92 AMPASFLALAQRAAAAA----------------GFPGFQPDACLINRYAPGAKLSLHQDKDERD----FRAPIVSVSLGL 151 (213)
T ss_pred CchHHHHHHHHHHHHHc----------------CCCCCCCCEEEEEeccCcCccccccCCCccc----CCCCEEEEeCCC
Confidence 99999999999987543 4457899999999999999999999987754 689999999999
Q ss_pred ceEEEeecccCCCccEEEEcCCCcEEEEcCCcccccccCCccCCCCCCCchhhcccCCCCeEEEEeecC
Q 040013 518 SAEFLYGDLRDVANAKKVILESGDVLIFGGKSRRIFHGVEKIFPDTAPKSLLEETSMRRGRLNLTFRQY 586 (586)
Q Consensus 518 SriFlFg~~~r~e~~~sV~LeSGDLLIM~GeSR~~~HGVPK~k~dt~P~~Ll~e~~lr~~RINLTFRqV 586 (586)
+|+|+|++.++.+++.+|.|+|||||||+|++|++||||+++++.+.|. +...|||||||++
T Consensus 152 ~~~F~~~~~~~~~~~~~l~L~~Gdllvm~G~sr~~~HgVp~~~~~~~p~-------~g~~RINLTFR~~ 213 (213)
T PRK15401 152 PAVFQFGGLKRSDPLQRILLEHGDVVVWGGPSRLRYHGILPLKAGEHPL-------TGECRINLTFRKA 213 (213)
T ss_pred CeEEEecccCCCCceEEEEeCCCCEEEECchHhheeccCCcCCCCcCCC-------CCCCeEEEEeEcC
Confidence 9999999877777789999999999999999999999999999887762 4678999999986
No 2
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A ....
Probab=100.00 E-value=1.2e-37 Score=287.01 Aligned_cols=191 Identities=27% Similarity=0.469 Sum_probs=137.1
Q ss_pred ceEEEcCCCCHHHHHHHHHHHHHcCCCCCCCcCCcccCCceeEEEEEec-CCcccCC--CCccCCCCCCCCCCCCCChHH
Q 040013 366 KSNYIEAWYGITEEVKIVKICRDLGLGPGGFYQPGYRDGANLYLKMMCL-GKNWDPE--TSQYGTSRPTDGAVPPIIPVE 442 (586)
Q Consensus 366 GLvLLpdFLS~eEQ~~LVk~c~elgl~P~gw~qP~~r~GkkmkLR~~tL-Gy~WD~D--TyrYs~~~P~dGap~ppiPe~ 442 (586)
|++|+++||+++||++|++.|.+. .+|.++.+..++....++..+ +.+|... .|.|++..+.+..++++||++
T Consensus 1 G~~~~~~fls~~e~~~l~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~y~~~~~~~~~~~~~~p~~ 76 (194)
T PF13532_consen 1 GLYYIPNFLSEEEAAELLNELRES----APFRQPTYPMGKVYSLPRKLCGGLSWVGDGPSYRYSGKRPVRSKPWPPFPEW 76 (194)
T ss_dssp -EEEETTSS-HHHHHHHHHHHHHH----S--B-GCCCCCCECCECCE-SSEEEEEECT--CCCTCC-EECCCEBSCCHHH
T ss_pred CEEEECCCCCHHHHHHHHHHHHhh----CCCcCCeEcCCCEEccceecceeeEEECCCCCeEcCCccccCCCCCCCccHH
Confidence 899999999999999999999977 568888776666654433222 2445443 456665434566789999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccCcccccccCCCCCCCEEEEeecCCCCCccccCCCccccccccCCCCEEEEecCCceEEE
Q 040013 443 FHQLVGKAIQDSRALIEKISTGRKDIEAELPCMSPDICIANFYSATGKLGLHQDKDESQESIDKCLPVVSFSIGDSAEFL 522 (586)
Q Consensus 443 L~eLveraa~~A~~L~~~i~~g~~~~e~~~p~~~PDacLVNfY~pGd~MGwH~Dd~Ese~sL~~~~PIVSLSLGaSriFl 522 (586)
|..+++++.+.+. ..+.+.||+||||+|.+|++|++|+|+.+. +++.||+|||||++|+|.
T Consensus 77 l~~~~~~~~~~~~---------------~~~~~~~n~~liN~Y~~g~~i~~H~D~~~~----~~~~~I~slSLG~~~~~~ 137 (194)
T PF13532_consen 77 LSRLLERLVEATG---------------IPPGWRPNQCLINYYRDGSGIGPHSDDEEY----GFGPPIASLSLGSSRVFR 137 (194)
T ss_dssp HHHHHHHHHHHHT----------------SHSS--SEEEEEEESSTT-EEEE---TTC-----CCSEEEEEEEES-EEEE
T ss_pred HHHHHHHHHHHhc---------------cccCCCCCEEEEEecCCCCCcCCCCCcccc----cCCCcEEEEEEccCceEE
Confidence 9999999876531 234689999999999999999999999643 478999999999999999
Q ss_pred eecccCCCccEEEEcCCCcEEEEcCCcccccccCCccCCCCCCCchhhcccCCCCeEEEEee
Q 040013 523 YGDLRDVANAKKVILESGDVLIFGGKSRRIFHGVEKIFPDTAPKSLLEETSMRRGRLNLTFR 584 (586)
Q Consensus 523 Fg~~~r~e~~~sV~LeSGDLLIM~GeSR~~~HGVPK~k~dt~P~~Ll~e~~lr~~RINLTFR 584 (586)
|+...+.+....|.|++||||||+|++|+.||||+++..++.+.. +.++.|||||||
T Consensus 138 f~~~~~~~~~~~~~L~~gsl~vm~g~~r~~~H~I~~~~~~~~~~~-----~~~~~RislTfR 194 (194)
T PF13532_consen 138 FRNKSDDDEPIEVPLPPGSLLVMSGEARYDWHGIPPVKKDTHPSH-----YVRGRRISLTFR 194 (194)
T ss_dssp EEECGGTS-EEEEEE-TTEEEEEETTHHHHEEEE-S-SCEEEEST-----EE-S-EEEEEEE
T ss_pred EeeccCCCccEEEEcCCCCEEEeChHHhhheeEcccccCCccccc-----cCCCCEEEEEeC
Confidence 998877778999999999999999999999999999987644322 358999999999
No 3
>TIGR00568 alkb DNA alkylation damage repair protein AlkB. Proteins in this family have an as of yet undetermined function in the repair of alkylation damage to DNA. Alignment and family designation based on phylogenomic analysis of Jonathan A. Eisen (PhD Thesis, Stanford University, 1999).
Probab=100.00 E-value=9.9e-37 Score=287.16 Aligned_cols=161 Identities=29% Similarity=0.485 Sum_probs=133.6
Q ss_pred EcCCCCHHHHHHHHHHHHHcCCCCCCCcCCcccCCceeEE--------EEEecCCcccCCCCccCCCCCCCCCCCCCChH
Q 040013 370 IEAWYGITEEVKIVKICRDLGLGPGGFYQPGYRDGANLYL--------KMMCLGKNWDPETSQYGTSRPTDGAVPPIIPV 441 (586)
Q Consensus 370 LpdFLS~eEQ~~LVk~c~elgl~P~gw~qP~~r~GkkmkL--------R~~tLGy~WD~DTyrYs~~~P~dGap~ppiPe 441 (586)
|++|+..++|..|+++|++...+ .+|+++....|+.+.+ ||.+.|++|+|.++.|. .+.+||+||+
T Consensus 1 l~~~~~~~~~~~l~~~~~~~~~~-~~w~~~~~~~gk~~~~pr~~~~~l~W~~~g~~Y~ys~~~~~-----~~~~~p~~P~ 74 (169)
T TIGR00568 1 LKRYFAFNAQEQLIRDINDVASQ-DPFRQYVTPGGYTMSVAMTNLGKLGWTTHGQGYLYSPKDPQ-----TNKPWPAMPQ 74 (169)
T ss_pred CCCccChHHHHHHHHHHHHHhhc-CCCcCeEecCCeEeeehhhhcccceEEcCCCcccCCCcccC-----CCCCCCCCCH
Confidence 46899999999999999998544 7899975446877655 45444555555544443 3467899999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCcccccccCCCCCCCEEEEeecCCCCCccccCCCccccccccCCCCEEEEecCCceEE
Q 040013 442 EFHQLVGKAIQDSRALIEKISTGRKDIEAELPCMSPDICIANFYSATGKLGLHQDKDESQESIDKCLPVVSFSIGDSAEF 521 (586)
Q Consensus 442 ~L~eLveraa~~A~~L~~~i~~g~~~~e~~~p~~~PDacLVNfY~pGd~MGwH~Dd~Ese~sL~~~~PIVSLSLGaSriF 521 (586)
+|.+|++++++.+ +++.+.||+||||||++|++||||+|+.| ++++.||||||||++|+|
T Consensus 75 ~L~~L~~~v~~~~----------------g~~~~~~n~~LvN~Y~~Gd~mg~H~D~~e----~~~~~pI~SvSLG~~r~F 134 (169)
T TIGR00568 75 DLGDLCERVATAA----------------GFPDFQPDACLVNRYAPGATLSLHQDRDE----PDLRAPLLSVSLGLPAIF 134 (169)
T ss_pred HHHHHHHHHHHHh----------------CCCCCCCCEEEEEeecCCCcccccccccc----ccCCCCEEEEeCCCCEEE
Confidence 9999999886543 44568999999999999999999999755 458899999999999999
Q ss_pred EeecccCCCccEEEEcCCCcEEEEcCCcccccccC
Q 040013 522 LYGDLRDVANAKKVILESGDVLIFGGKSRRIFHGV 556 (586)
Q Consensus 522 lFg~~~r~e~~~sV~LeSGDLLIM~GeSR~~~HGV 556 (586)
+|+++++++.+.+|.|+|||||||+|++|++||||
T Consensus 135 ~~~~~~~~~~~~~l~L~sGsllvM~G~sR~~~Hgv 169 (169)
T TIGR00568 135 LIGGLKRNDPPKRLRLHSGDVVIMGGESRLAFHGV 169 (169)
T ss_pred EecCCcCCCceEEEEeCCCCEEEECCchhccccCC
Confidence 99998777778999999999999999999999998
No 4
>COG3145 AlkB Alkylated DNA repair protein [DNA replication, recombination, and repair]
Probab=99.97 E-value=2e-31 Score=257.00 Aligned_cols=181 Identities=27% Similarity=0.402 Sum_probs=150.3
Q ss_pred ccCCceEEEcCCCCHHHHHHHHHHHHHcCCCCCCCcCCccc-CCceeEEEEEecCCcccCCCCccCCCCCCCCCCCCCCh
Q 040013 362 SIGAKSNYIEAWYGITEEVKIVKICRDLGLGPGGFYQPGYR-DGANLYLKMMCLGKNWDPETSQYGTSRPTDGAVPPIIP 440 (586)
Q Consensus 362 ~~~pGLvLLpdFLS~eEQ~~LVk~c~elgl~P~gw~qP~~r-~GkkmkLR~~tLGy~WD~DTyrYs~~~P~dGap~ppiP 440 (586)
...+|+.++++|+ -.+|.++++.+..+ +...+|.++.++ .|+.+++.+ .+||.++-..|.|+...+.++.+||++|
T Consensus 12 ~~~~G~~~~~~~~-~~~~~~l~~~l~~~-~~~~P~~~~~~~~~g~~~sV~r-~~~W~~d~~gy~y~~~~p~~~~p~p~l~ 88 (194)
T COG3145 12 QLAPGAVILPGFL-LLTQGALVAALLFL-LSQAPWFRPRRTPYGKPMSVPR-LLGWVTDRRGYRYSLRSPLTGKPWPPLL 88 (194)
T ss_pred cCCCCeEEEeccc-ccchHHHHHHHHHh-cccCcccceeecCCCcEeeeee-ccceecccccccccccccCCCCCCCccH
Confidence 4678999999999 56677788777776 344688888776 488998877 5776676446788999998888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCcccccccCCCCCCCEEEEeecCCCCCccccCCCccccccccCCCCEEEEecCCceE
Q 040013 441 VEFHQLVGKAIQDSRALIEKISTGRKDIEAELPCMSPDICIANFYSATGKLGLHQDKDESQESIDKCLPVVSFSIGDSAE 520 (586)
Q Consensus 441 e~L~eLveraa~~A~~L~~~i~~g~~~~e~~~p~~~PDacLVNfY~pGd~MGwH~Dd~Ese~sL~~~~PIVSLSLGaSri 520 (586)
..+..+... .+++.+.||+||||+|++|++||||+|++|.. ...||||||||++|+
T Consensus 89 ~~~~~~~~~--------------------~g~~~~~~ea~Lvn~Y~pGd~ig~HqD~~e~~----~~~~v~slSLg~~~~ 144 (194)
T COG3145 89 ALFHDLFGA--------------------AGYPFEGPEAVLVNRYRPGASIGWHQDKDEED----DRPPVASLSLGAPCI 144 (194)
T ss_pred HHHHHHHHH--------------------hcCCCCChhheeEEeccCCCcccccccccccc----CCCceEEEecCCCeE
Confidence 887777652 26678999999999999999999999997764 348999999999999
Q ss_pred EEeecccCCCccEEEEcCCCcEEEEcCCccccc-ccCCccCCCCCCCchhhcccCCCCeEEE
Q 040013 521 FLYGDLRDVANAKKVILESGDVLIFGGKSRRIF-HGVEKIFPDTAPKSLLEETSMRRGRLNL 581 (586)
Q Consensus 521 FlFg~~~r~e~~~sV~LeSGDLLIM~GeSR~~~-HGVPK~k~dt~P~~Ll~e~~lr~~RINL 581 (586)
|+|++.++.....++.|+|||||||+|++|+.| |.||++... ...||||
T Consensus 145 F~~~~~~r~~~~~~~~L~~Gdvvvm~G~~r~~~~h~~p~~~~~------------~~~Rinl 194 (194)
T COG3145 145 FRLRGRRRRGPGLRLRLEHGDVVVMGGPSRLAWHHIIPKTSRL------------TGQRINL 194 (194)
T ss_pred EEeccccCCCCceeEEecCCCEEEecCCccccccccccccccC------------CcccccC
Confidence 999999887788999999999999999999999 688887653 3488885
No 5
>KOG2731 consensus DNA alkylation damage repair protein [RNA processing and modification]
Probab=99.86 E-value=9.1e-23 Score=210.79 Aligned_cols=304 Identities=36% Similarity=0.485 Sum_probs=235.5
Q ss_pred CCCCCCCCCCCcchhcccccccCCceEEEeecccccccccccCCCCCcccccccccccccCCCccccccccccccccccc
Q 040013 205 DSKTQLPDVSPNSLEAGVSCMKQPECIVVSDLVTGDVSHSFSGHSDSKNMHLDEIGIQIGETPEKKEEDDATSKLNFSGK 284 (586)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (586)
-.|.+|- |.|-... |-|||.-.+.+ ||+.-..- +++ -.--+|--.-+-||-+ +.-|.-+-+..+.
T Consensus 67 v~K~~l~-v~ps~~~----~~k~p~~l~~s----g~~k~~lq----s~~-~~~s~~~~v~qe~e~~-~~~a~~~c~l~~~ 131 (378)
T KOG2731|consen 67 VKKGLLG-VNPSTEQ----FQKQPDSLWLS----GDNKLILQ----SPQ-LPRSGGHFVIQEPENK-KSGAPNYCLLVNR 131 (378)
T ss_pred eeeeeec-ccccchh----hhcCchhhhhc----cccccccc----CCC-cCcccceeeeeccccc-cccCccccccccc
Confidence 3444444 5554433 77888655543 33332222 211 1222232233334433 3334444444443
Q ss_pred eee--eeecccCCCCccCcccccccccCCCCcccCCCC--CCccccCCCCCCcccCCCCCccccCCchhhcccccccccc
Q 040013 285 LKV--GHMQESVPPAIADTKDQVSLEEGPNNFLSIGVS--ENSVQQAIDKPFDLCPPKKGTVMLNPSLLVTNRQKRNDLK 360 (586)
Q Consensus 285 ~~~--~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~s--~~s~~~s~~~pfDi~~~k~~~~~LkP~L~e~nRek~~~~~ 360 (586)
+.- -.|+|+|+++.+ ++++++++...+..+++.+. ++....+....| |.++++. ..++|+|+...+++.+...
T Consensus 132 ~sd~t~~~~~s~ss~~~-~~~e~~sv~~~r~~~KlRw~T~G~~~dw~s~~~~-~~~s~k~-~~~~~~ll~~~~~~~~~a~ 208 (378)
T KOG2731|consen 132 MSDVTLQDLESVSSESD-QNVELKSVRNHRLLPKLRWVTLGNQYDWSSKDIF-IFLSKKH-YNIKPSLLGLLREKVKAAK 208 (378)
T ss_pred ccccccccccccchhhh-ccccceeccchhhhhhhcccccccccCCcccccc-ccccccC-CCCChHHhhhhhhhhhhhc
Confidence 332 257899999998 99999999999999999998 888877777777 7788877 6799999999999877665
Q ss_pred ccc----CCceEEEcCCCCHHHHHHHHHHHHHcCCCCCCCcCCcccCCceeEEEEEecCCcccCCCCccCCCCCCCCCCC
Q 040013 361 LSI----GAKSNYIEAWYGITEEVKIVKICRDLGLGPGGFYQPGYRDGANLYLKMMCLGKNWDPETSQYGTSRPTDGAVP 436 (586)
Q Consensus 361 ~~~----~pGLvLLpdFLS~eEQ~~LVk~c~elgl~P~gw~qP~~r~GkkmkLR~~tLGy~WD~DTyrYs~~~P~dGap~ 436 (586)
+.. .+| +|++||++.+|..++..|+++++.+. |++|.+..+..+.+.|+|+|..|++.+.+|....+.+|
T Consensus 209 ~~~~~~~~~G--li~nYlsi~~tl~ih~d~reld~~~p-f~s~s~g~~ai~lLg~m~l~e~p~p~~lrsGdv~im~G--- 282 (378)
T KOG2731|consen 209 GFSHIVIRPG--LIKNYLSIDDTLGIHLDCRELDLSKP-FYSPSLGQGAILLLGMMCLGENPDPMTLRSGDVVIMDG--- 282 (378)
T ss_pred CccceeccCc--ceeeecccCcEEEEEeehhhcccCCc-cccccccccceeeecccccCCCCCccccccCceEeecc---
Confidence 443 468 99999999999999999999998876 99999988999999999999999999999998887776
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHhhccCcccccccCCCCCCCEEEEeecCCCCCccccCCCccccccccCCCCEEEEecC
Q 040013 437 PIIPVEFHQLVGKAIQDSRALIEKISTGRKDIEAELPCMSPDICIANFYSATGKLGLHQDKDESQESIDKCLPVVSFSIG 516 (586)
Q Consensus 437 ppiPe~L~eLveraa~~A~~L~~~i~~g~~~~e~~~p~~~PDacLVNfY~pGd~MGwH~Dd~Ese~sL~~~~PIVSLSLG 516 (586)
+..|+..++.+++.|... +.+.+.++++.| -||+||+|||.+..+|+.|+|..|+..++..+.||++||.|
T Consensus 283 ------fsrlv~haIp~s~sl~~~-e~~~~~~~~e~p--lp~i~~~~f~~~~g~~~~~Q~~~ey~ks~r~nl~Irqv~~~ 353 (378)
T KOG2731|consen 283 ------FSRLVEHAIPESRSLPAR-ESNGTKAGDEAP--LPDICIVNFYSETGSLGLHQDKAEYLKSSRVNLPIRQVSIG 353 (378)
T ss_pred ------hHHHHhhccchhceeccc-ccCCCcccccCC--CcccccccccCCCcccccchhHHHHHHhhhcCceeEEeccC
Confidence 888999999888777655 566777788877 89999999999999999999999999899999999999999
Q ss_pred CceEEEeecccCCCccEEEEcCCCcEEEEcCCcccccccCC
Q 040013 517 DSAEFLYGDLRDVANAKKVILESGDVLIFGGKSRRIFHGVE 557 (586)
Q Consensus 517 aSriFlFg~~~r~e~~~sV~LeSGDLLIM~GeSR~~~HGVP 557 (586)
+ +.|+++..++.++ |.+|..||||.
T Consensus 354 d-~~f~~~~~~d~~~---------------~~sr~~f~~~~ 378 (378)
T KOG2731|consen 354 D-AEFLYGDQRDEDK---------------GRSRMVFHGVR 378 (378)
T ss_pred c-cccccCchhhhhh---------------hhheecccCCC
Confidence 9 9999999876654 88999999983
No 6
>KOG3200 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.74 E-value=7.8e-18 Score=161.98 Aligned_cols=180 Identities=19% Similarity=0.211 Sum_probs=131.3
Q ss_pred CCceEEEcCCCCHHHHHHHHHHHHHcCCCCCCCcCCcccCCceeEEEEEecCCcccCCCCccCCCCCCCCCCCCCChHHH
Q 040013 364 GAKSNYIEAWYGITEEVKIVKICRDLGLGPGGFYQPGYRDGANLYLKMMCLGKNWDPETSQYGTSRPTDGAVPPIIPVEF 443 (586)
Q Consensus 364 ~pGLvLLpdFLS~eEQ~~LVk~c~elgl~P~gw~qP~~r~GkkmkLR~~tLGy~WD~DTyrYs~~~P~dGap~ppiPe~L 443 (586)
.|-+.|||+||+.+||+.+++.+... .+|.|+ ....+|++++| +...-.|..+..||+||
T Consensus 11 ~pt~~YIPnfIt~EEe~~~lshIe~a-------p~pkW~--~L~NRRLqNyG-----------Gvvh~~glipeelP~wL 70 (224)
T KOG3200|consen 11 APTMIYIPNFITEEEENLYLSHIENA-------PQPKWR--VLANRRLQNYG-----------GVVHKTGLIPEELPPWL 70 (224)
T ss_pred cceEEEcCCccChHHHHHHHHHHhcC-------CCchhH--HHHhhhhhhcC-----------CccccCCcCccccCHHH
Confidence 45789999999999999999887665 233332 12345667444 33333566778999999
Q ss_pred HHHHHHHHHHHHHHHHhhccCcccccccCCCCCCCEEEEeecCCCCCccccCCCccccccccCCCCEEEEecCCceEEEe
Q 040013 444 HQLVGKAIQDSRALIEKISTGRKDIEAELPCMSPDICIANFYSATGKLGLHQDKDESQESIDKCLPVVSFSIGDSAEFLY 523 (586)
Q Consensus 444 ~eLveraa~~A~~L~~~i~~g~~~~e~~~p~~~PDacLVNfY~pGd~MGwH~Dd~Ese~sL~~~~PIVSLSLGaSriFlF 523 (586)
+.++.++... ..|+. ..|.+|||.|.+|++|++|.|-.- +.+.|..||||+.+++.|
T Consensus 71 q~~v~kinnl----------------glF~s-~~NHVLVNeY~pgqGImPHtDGPa------f~piVstiSlGsh~vldf 127 (224)
T KOG3200|consen 71 QYYVDKINNL----------------GLFKS-PANHVLVNEYLPGQGIMPHTDGPA------FHPIVSTISLGSHTVLDF 127 (224)
T ss_pred HHHHHHhhcc----------------cccCC-CcceeEeecccCCCCcCcCCCCCc------ccceEEEEecCCceEEec
Confidence 9999987532 24554 789999999999999999999843 456667899999999999
Q ss_pred ecccCCC-------------ccEEEEcCCCcEEEEcCCccccc-ccCCccCCCCCCC----ch------hhcccCCCCeE
Q 040013 524 GDLRDVA-------------NAKKVILESGDVLIFGGKSRRIF-HGVEKIFPDTAPK----SL------LEETSMRRGRL 579 (586)
Q Consensus 524 g~~~r~e-------------~~~sV~LeSGDLLIM~GeSR~~~-HGVPK~k~dt~P~----~L------l~e~~lr~~RI 579 (586)
-...+.+ ....+.|++.++||+.+++=..| |||.....+.... .+ ......++.||
T Consensus 128 ~~p~r~e~~d~te~~dqp~R~~fsllleprslLilkd~aYtd~LHgIs~s~~d~l~~~~sna~ac~s~k~Gd~lvr~tRv 207 (224)
T KOG3200|consen 128 YDPVRQEVNDGTESKDQPLRYLFSLLLEPRSLLILKDDAYTDFLHGISDSPTDCLNQVVSNALACSSRKDGDKLVRQTRV 207 (224)
T ss_pred ccccccccCCccccCCCCccceeeeeeccceEEEEcCcHHHHHHhhcccChHHHHHHHhhhhhhccccCCcceeeeccee
Confidence 8743211 24789999999999999996666 9998764431100 00 01234679999
Q ss_pred EEEeecC
Q 040013 580 NLTFRQY 586 (586)
Q Consensus 580 NLTFRqV 586 (586)
|||+|.|
T Consensus 208 SLTiR~V 214 (224)
T KOG3200|consen 208 SLTIRLV 214 (224)
T ss_pred EEEEecc
Confidence 9999975
No 7
>KOG2731 consensus DNA alkylation damage repair protein [RNA processing and modification]
Probab=99.70 E-value=1e-17 Score=173.76 Aligned_cols=158 Identities=26% Similarity=0.337 Sum_probs=122.4
Q ss_pred eEEEEEecCCcccCCCCccCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHhhccCcccccccCCCC-CCCEEEEeec
Q 040013 407 LYLKMMCLGKNWDPETSQYGTSRPTDGAVPPIIPVEFHQLVGKAIQDSRALIEKISTGRKDIEAELPCM-SPDICIANFY 485 (586)
Q Consensus 407 mkLR~~tLGy~WD~DTyrYs~~~P~dGap~ppiPe~L~eLveraa~~A~~L~~~i~~g~~~~e~~~p~~-~PDacLVNfY 485 (586)
.++||+|+|++|+|.++.|- . +...+...+|++|..+.+.-+++|. ++..+ .+..+|+|||
T Consensus 163 ~KlRw~T~G~~~dw~s~~~~-~--~~s~k~~~~~~~ll~~~~~~~~~a~---------------~~~~~~~~~Gli~nYl 224 (378)
T KOG2731|consen 163 PKLRWVTLGNQYDWSSKDIF-I--FLSKKHYNIKPSLLGLLREKVKAAK---------------GFSHIVIRPGLIKNYL 224 (378)
T ss_pred hhhcccccccccCCcccccc-c--cccccCCCCChHHhhhhhhhhhhhc---------------CccceeccCcceeeec
Confidence 47899999999999988832 0 1123456788888888877665542 22222 2334799999
Q ss_pred CCCCCccccCCCccccccccCCCCEEEEecCCceEEEeecccCCCccEEEEcCCCcEEEEcCCcccccccCC--ccCCCC
Q 040013 486 SATGKLGLHQDKDESQESIDKCLPVVSFSIGDSAEFLYGDLRDVANAKKVILESGDVLIFGGKSRRIFHGVE--KIFPDT 563 (586)
Q Consensus 486 ~pGd~MGwH~Dd~Ese~sL~~~~PIVSLSLGaSriFlFg~~~r~e~~~sV~LeSGDLLIM~GeSR~~~HGVP--K~k~dt 563 (586)
..++.|+.|.|..|. +...|++|+|||+.|+|+++....++.+..+.|++||++||.|.+|..+|||| +..++.
T Consensus 225 si~~tl~ih~d~rel----d~~~pf~s~s~g~~ai~lLg~m~l~e~p~p~~lrsGdv~im~Gfsrlv~haIp~s~sl~~~ 300 (378)
T KOG2731|consen 225 SIDDTLGIHLDCREL----DLSKPFYSPSLGQGAILLLGMMCLGENPDPMTLRSGDVVIMDGFSRLVEHAIPESRSLPAR 300 (378)
T ss_pred ccCcEEEEEeehhhc----ccCCccccccccccceeeecccccCCCCCccccccCceEeecchHHHHhhccchhceeccc
Confidence 999999999999774 46788999999999999999998889999999999999999999999999999 544432
Q ss_pred ----------CC--Cchh---------------hcccCCCCeEEEEeecC
Q 040013 564 ----------AP--KSLL---------------EETSMRRGRLNLTFRQY 586 (586)
Q Consensus 564 ----------~P--~~Ll---------------~e~~lr~~RINLTFRqV 586 (586)
+| .-|+ ...++.+.|+|||+|||
T Consensus 301 e~~~~~~~~e~plp~i~~~~f~~~~g~~~~~Q~~~ey~ks~r~nl~Irqv 350 (378)
T KOG2731|consen 301 ESNGTKAGDEAPLPDICIVNFYSETGSLGLHQDKAEYLKSSRVNLPIRQV 350 (378)
T ss_pred ccCCCcccccCCCcccccccccCCCcccccchhHHHHHHhhhcCceeEEe
Confidence 11 1110 13568899999999996
No 8
>KOG4176 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.62 E-value=2.2e-15 Score=155.47 Aligned_cols=175 Identities=21% Similarity=0.252 Sum_probs=120.1
Q ss_pred ceEEEcCCCCHHHHHHHHHHHHHcCCCCCCCcCCcccCCceeEEEEEecCCcccCCCCccCCCCCCCCCCCCCChHHHHH
Q 040013 366 KSNYIEAWYGITEEVKIVKICRDLGLGPGGFYQPGYRDGANLYLKMMCLGKNWDPETSQYGTSRPTDGAVPPIIPVEFHQ 445 (586)
Q Consensus 366 GLvLLpdFLS~eEQ~~LVk~c~elgl~P~gw~qP~~r~GkkmkLR~~tLGy~WD~DTyrYs~~~P~dGap~ppiPe~L~e 445 (586)
++.++.+|++..+++.++.++... .|.. + ++-.++++.+||+-+++.+..-+... +..+||..+..
T Consensus 129 e~~~~~d~V~el~e~~l~~~~~~e-----~~~~-~---~~gk~R~~iq~G~~f~y~~~~~d~~~-----~~~piPs~~~~ 194 (323)
T KOG4176|consen 129 ELSLIVDFVTELEEKGLIGALVDE-----TFTY-Q---ESGKHREVIQLGYPFDYRTNNVDESK-----PVDPIPSLFKS 194 (323)
T ss_pred hceehhhhhhhhHHhhhhcccccc-----ccee-e---ccccceeeeecCceeccCCCcccccC-----ccCCCchHHHH
Confidence 499999999988888777666544 2322 1 11223456789988877665444332 25789999999
Q ss_pred HHHHHHHHHHHHHHhhccCcccccccCCCCCCCEEEEeecCCCCCccccCCCccccccccCCCCEEEEecCCceEEEeec
Q 040013 446 LVGKAIQDSRALIEKISTGRKDIEAELPCMSPDICIANFYSATGKLGLHQDKDESQESIDKCLPVVSFSIGDSAEFLYGD 525 (586)
Q Consensus 446 Lveraa~~A~~L~~~i~~g~~~~e~~~p~~~PDacLVNfY~pGd~MGwH~Dd~Ese~sL~~~~PIVSLSLGaSriFlFg~ 525 (586)
++++++.+. .+|. .||+|+||+|.+|++|.+|.|. +. +..||++|||-++|+|.|++
T Consensus 195 ii~rlv~~~----------------~ip~-~pd~~~iN~Ye~G~~i~ph~~~-~~-----F~~Pi~slS~lSe~~m~Fg~ 251 (323)
T KOG4176|consen 195 IIDRLVSWR----------------VIPE-RPDQCTINFYEPGDGIPPHIDH-SA-----FLDPISSLSFLSECTMEFGH 251 (323)
T ss_pred HHHHhhhhc----------------cCCC-CCCeeEEEeeCCCCCCCCCCCh-HH-----hcCceEEEEeecceeEEecc
Confidence 999998652 4555 7999999999999999999976 43 67999999999999999998
Q ss_pred ccCCCccEEEEcCCCcEEEEcCCccccc-ccCCccCCCCCCCchhhcccCCCCeEEEEeecC
Q 040013 526 LRDVANAKKVILESGDVLIFGGKSRRIF-HGVEKIFPDTAPKSLLEETSMRRGRLNLTFRQY 586 (586)
Q Consensus 526 ~~r~e~~~sV~LeSGDLLIM~GeSR~~~-HGVPK~k~dt~P~~Ll~e~~lr~~RINLTFRqV 586 (586)
.-..+..- .. .| +|+++.|+.| |.++....+.++... ...+..||+||||++
T Consensus 252 ~~~~~~~~-~~--~g---~~s~p~~~g~~lvi~~~~ad~~~~~~---~~~~~kRisitfrki 304 (323)
T KOG4176|consen 252 GLLSDNIG-NF--RG---SLSLPLRYGSVLVIRGRSADVAPHCI---RPSRNKRISITFRKI 304 (323)
T ss_pred cccccCcc-cc--cc---ccccccccCeEEEeCCCccccccccc---CCCCCceEEEEEEEe
Confidence 74433211 11 11 4555554444 555555444433211 114799999999974
No 9
>KOG3959 consensus 2-Oxoglutarate- and iron-dependent dioxygenase-related proteins [General function prediction only]
Probab=98.54 E-value=3.8e-08 Score=99.33 Aligned_cols=173 Identities=16% Similarity=0.140 Sum_probs=112.4
Q ss_pred ccCCceEEEcCCCCHHHHHHHHHHHHHcCCCCCCCcCCcccCCceeEEEEEecCCcccCCCCccCCCCCCCCCCCCCChH
Q 040013 362 SIGAKSNYIEAWYGITEEVKIVKICRDLGLGPGGFYQPGYRDGANLYLKMMCLGKNWDPETSQYGTSRPTDGAVPPIIPV 441 (586)
Q Consensus 362 ~~~pGLvLLpdFLS~eEQ~~LVk~c~elgl~P~gw~qP~~r~GkkmkLR~~tLGy~WD~DTyrYs~~~P~dGap~ppiPe 441 (586)
.+-||+.++.+|||.+|+.+|++-+... +|.+-+ .| +|.+.||-.-+...++.... ..-.||.
T Consensus 69 ~p~pG~~lie~Fls~~Eea~l~~~~D~~-----pW~~SQ--SG----RRKQdyGPKvNFkk~Klkt~------~F~G~P~ 131 (306)
T KOG3959|consen 69 IPIPGLTLIENFLSESEEAKLLNMIDTV-----PWAQSQ--SG----RRKQDYGPKVNFKKKKLKTD------TFVGMPE 131 (306)
T ss_pred cccCCeeehhhhhccchHhHHHHHhccC-----chhhhc--cc----ccccccCCccchhhhhhccC------cccCCch
Confidence 4557999999999999999999988776 685532 24 45566664443333333211 2345888
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCcccccccCCCC-CCCEEEEeecCC-CCCccccCCCccccccccCCCCEEEEecC---
Q 040013 442 EFHQLVGKAIQDSRALIEKISTGRKDIEAELPCM-SPDICIANFYSA-TGKLGLHQDKDESQESIDKCLPVVSFSIG--- 516 (586)
Q Consensus 442 ~L~eLveraa~~A~~L~~~i~~g~~~~e~~~p~~-~PDacLVNfY~p-Gd~MGwH~Dd~Ese~sL~~~~PIVSLSLG--- 516 (586)
.-..+++++... +.+.+| .+++|=+-|=+. |+.|.+|+|+.=- -+.-+|++-+-
T Consensus 132 ~~~~v~rrm~~y----------------p~l~gfqp~EqCnLeYep~kgsaIdpH~DD~Wi-----WGeRlv~~n~l~d~ 190 (306)
T KOG3959|consen 132 YADMVLRRMSEY----------------PVLKGFQPFEQCNLEYEPVKGSAIDPHQDDMWI-----WGERLVRSNRLFDF 190 (306)
T ss_pred HHHHHHHHhhcc----------------chhhccCcHHHcCcccccccCCccCccccchhh-----hhhheeehhhccHH
Confidence 877777776432 111233 458888876664 5899999998321 12333333211
Q ss_pred ----------CceEEEeeccc-------------------CCCccEEEEcCCCcEEEEcCCccccc-ccCCccCCCCCCC
Q 040013 517 ----------DSAEFLYGDLR-------------------DVANAKKVILESGDVLIFGGKSRRIF-HGVEKIFPDTAPK 566 (586)
Q Consensus 517 ----------aSriFlFg~~~-------------------r~e~~~sV~LeSGDLLIM~GeSR~~~-HGVPK~k~dt~P~ 566 (586)
+++++.+-..- .......|.+++.|||||.|++|+-| |||-+.
T Consensus 191 vl~lc~~e~~~sg~~nL~~~~s~~~e~l~~~li~~s~~~l~~~~~~~ipmP~rSLlvl~g~aRyqwkH~vlr~------- 263 (306)
T KOG3959|consen 191 VLKLCSKECLASGIINLNTNFSESNEFLSINLINGSVMTLNKSFLCYIPMPHRSLLVLAGEARYQWKHGVLRH------- 263 (306)
T ss_pred HHHhhhhhhhccceeeeccCccccccccchhhcccchhhhccceEEEeecCcceeEEeechhHhhHHHHHHHH-------
Confidence 12222222110 11235789999999999999999999 999876
Q ss_pred chhhcccCCCCeEEEEeec
Q 040013 567 SLLEETSMRRGRLNLTFRQ 585 (586)
Q Consensus 567 ~Ll~e~~lr~~RINLTFRq 585 (586)
..+++||-+|||.
T Consensus 264 ------hi~~RRvcvt~RE 276 (306)
T KOG3959|consen 264 ------HIRGRRVCVTMRE 276 (306)
T ss_pred ------hhhhceeeeeHHh
Confidence 2489999999995
No 10
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues. Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor.
Probab=97.47 E-value=0.007 Score=56.28 Aligned_cols=91 Identities=26% Similarity=0.373 Sum_probs=56.8
Q ss_pred CCCCEEEEeecCCCCCccccCCCccccccccCCCCEEEEecC--C---ceEEEeecccCCCccEEEEcCCCcEEEEcCCc
Q 040013 475 MSPDICIANFYSATGKLGLHQDKDESQESIDKCLPVVSFSIG--D---SAEFLYGDLRDVANAKKVILESGDVLIFGGKS 549 (586)
Q Consensus 475 ~~PDacLVNfY~pGd~MGwH~Dd~Ese~sL~~~~PIVSLSLG--a---SriFlFg~~~r~e~~~sV~LeSGDLLIM~GeS 549 (586)
...+.+.|+.|.+|+...+|.|...... .+..++++-|= . -..+.|-... ......|....|++|||...-
T Consensus 80 ~~~~~~~~~~Y~~g~~~~~H~D~~~~~~---~~~r~~T~~~yLn~~~~GG~~~f~~~~-~~~~~~v~P~~G~~v~f~~~~ 155 (178)
T smart00702 80 LSAEDAQVARYGPGGHYGPHVDNFEDDE---NGDRIATFLLYLNDVEEGGELVFPGLG-LMVCATVKPKKGDLLFFPSGR 155 (178)
T ss_pred ccCcceEEEEECCCCcccCcCCCCCCCC---CCCeEEEEEEEeccCCcCceEEecCCC-CccceEEeCCCCcEEEEeCCC
Confidence 4567889999999999999999854310 01223333221 0 0111111111 123458999999999998554
Q ss_pred ccccccCCccCCCCCCCchhhcccCCCCeEEEEe
Q 040013 550 RRIFHGVEKIFPDTAPKSLLEETSMRRGRLNLTF 583 (586)
Q Consensus 550 R~~~HGVPK~k~dt~P~~Ll~e~~lr~~RINLTF 583 (586)
...+|++..+. .+.|+.+|.
T Consensus 156 ~~~~H~v~pv~--------------~G~r~~~~~ 175 (178)
T smart00702 156 GRSLHGVCPVT--------------RGSRWAITG 175 (178)
T ss_pred CCccccCCcce--------------eCCEEEEEE
Confidence 46789999873 467888875
No 11
>PF12933 FTO_NTD: FTO catalytic domain; InterPro: IPR024367 Alpha-ketoglutarate-dependent dioxygenase FTO, also known as Fat mass and obesity-associated protein, is a nucleus protein which belongs to the FTO family. This enzyme is a dioxygenase that repairs alkylated DNA and RNA by oxidative demethylation []. FTO activity is highest towards single-stranded RNA containing 3-methyluracil, followed by single-stranded DNA containing 3-methylthymine. FTO has low demethylase activity towards single-stranded DNA containing 1-methyladenine or 3-methylcytosine []. FTO has no activity towards 1-methylguanine. It has no detectable activity towards double-stranded DNA. FTO requires molecular oxygen, alpha-ketoglutarate and iron. FTO contributes to the regulation of the global metabolic rate, energy expenditure and energy homeostasis. It contributes to the regulation of body size and body fat accumulation as well []. This domain is the catalytic AlkB-like domain from the FTO protein []. This domain catalyses a demethylase activity with a preference for 3-methylthymidine.; PDB: 3LFM_A.
Probab=97.15 E-value=0.0016 Score=66.57 Aligned_cols=93 Identities=18% Similarity=0.158 Sum_probs=49.8
Q ss_pred CCCCCCCEEEEeecCC----------------C-CCccccCCCccccccccCCCCEEEEecCC----ceEEEeecc--cC
Q 040013 472 LPCMSPDICIANFYSA----------------T-GKLGLHQDKDESQESIDKCLPVVSFSIGD----SAEFLYGDL--RD 528 (586)
Q Consensus 472 ~p~~~PDacLVNfY~p----------------G-d~MGwH~Dd~Ese~sL~~~~PIVSLSLGa----SriFlFg~~--~r 528 (586)
.+...||.+||||+.| | -.++||.|- . |....+|+--|--+ +....++-+ +-
T Consensus 133 ~~~~~fNvTLlN~MdP~~~~~~~LK~Ep~fgmGKmaVsWH~De--n---L~~~StVAVY~~s~~~~~~~~W~VgLka~D~ 207 (253)
T PF12933_consen 133 VGSCEFNVTLLNYMDPSSQAMPDLKEEPYFGMGKMAVSWHHDE--N---LVERSTVAVYSYSCEEPEPADWHVGLKAWDI 207 (253)
T ss_dssp -------EEEEEEE-S--S-SSS--B-SSS---BEEEEEE-----S---B-TT--EEEEEEE-----TTSEEEEEETT--
T ss_pred ccceeeehhhhhccCcccccccccccccccCCcceeeeecccc--c---cccccceEEEEecCCCCCCCceEEEEeecCC
Confidence 3456799999999998 1 247899995 2 66678888555433 233333322 22
Q ss_pred CCccEEEEcCCCcEEEEcCCc-ccccccCCccCCCCCCCchhhcccCCCCeEEEEee
Q 040013 529 VANAKKVILESGDVLIFGGKS-RRIFHGVEKIFPDTAPKSLLEETSMRRGRLNLTFR 584 (586)
Q Consensus 529 ~e~~~sV~LeSGDLLIM~GeS-R~~~HGVPK~k~dt~P~~Ll~e~~lr~~RINLTFR 584 (586)
..+...|.|++||.+.|-++. .+..|+|-.= .+.|+|=|-|
T Consensus 208 ~tP~L~vPL~sgd~Y~Mldd~N~tHqH~VlaG---------------~~~RfSSTHR 249 (253)
T PF12933_consen 208 ETPGLAVPLRSGDCYYMLDDFNATHQHCVLAG---------------SSARFSSTHR 249 (253)
T ss_dssp SS-EEEEEE-TT-EEEE-TTHHHHEEEEEE-----------------SS-EEEEEEE
T ss_pred CCCeeEEeccCCCeEEEccccchhhHHHHhcC---------------CCccccccce
Confidence 335789999999999999998 7777998642 4679998877
No 12
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=97.12 E-value=0.011 Score=59.39 Aligned_cols=163 Identities=18% Similarity=0.195 Sum_probs=84.1
Q ss_pred eEEEcCCCCHHHHHHHHHHHHHcCCCCCCCcCCcccCCceeEEEEEecCCcccCCCCccCCCCCCCCCCCCCChHHHHHH
Q 040013 367 SNYIEAWYGITEEVKIVKICRDLGLGPGGFYQPGYRDGANLYLKMMCLGKNWDPETSQYGTSRPTDGAVPPIIPVEFHQL 446 (586)
Q Consensus 367 LvLLpdFLS~eEQ~~LVk~c~elgl~P~gw~qP~~r~GkkmkLR~~tLGy~WD~DTyrYs~~~P~dGap~ppiPe~L~eL 446 (586)
+..++++||++|..+|++.+.+. +|..-... .|++ . ..+..+.-+. .-.++-..|.++
T Consensus 2 i~~I~~vLs~eec~~~~~~le~~-----~~~dg~~t-----------aG~~--~--~~vKnN~ql~--~d~~~a~~l~~~ 59 (226)
T PRK05467 2 LLHIPDVLSPEEVAQIRELLDAA-----EWVDGRVT-----------AGAQ--A--AQVKNNQQLP--EDSPLARELGNL 59 (226)
T ss_pred eeeecccCCHHHHHHHHHHHHhc-----CCccCCcC-----------cCcc--c--hhcccccccC--CCCHHHHHHHHH
Confidence 46799999999999999988776 45322111 1211 0 1111111110 112233444444
Q ss_pred HHHHHHHHHHHHHhhccCcccccccCCCCCCCEEEEeecCCCCCccccCCCccccccccCCCC---EEEEe--cCCce--
Q 040013 447 VGKAIQDSRALIEKISTGRKDIEAELPCMSPDICIANFYSATGKLGLHQDKDESQESIDKCLP---VVSFS--IGDSA-- 519 (586)
Q Consensus 447 veraa~~A~~L~~~i~~g~~~~e~~~p~~~PDacLVNfY~pGd~MGwH~Dd~Ese~sL~~~~P---IVSLS--LGaSr-- 519 (586)
+.+++..- .+.. ...+|.-. .-.++|.|.+|...++|+|..-... -+...- .+|+. |-.+-
T Consensus 60 i~~~L~~~-~l~~---------sa~lp~~i-~~~~f~rY~~G~~y~~H~D~~~~~~-~~~~~~~rs~lS~~lyLnd~~~y 127 (226)
T PRK05467 60 ILDALTRN-PLFF---------SAALPRKI-HPPLFNRYEGGMSYGFHVDNAVRSL-PGTGGRVRTDLSATLFLSDPDDY 127 (226)
T ss_pred HHHHHhcC-chhh---------hhcccccc-ccceEEEECCCCccCccccCCcccC-CCCCcceeEEEEEEEEeCCCCCC
Confidence 44433210 0100 01222211 2457999999999999999953210 000101 22222 21111
Q ss_pred ---EEEeecccCCCccEEEEcCCCcEEEEcCCcccccccCCccCCCCCCCchhhcccCCCCeEEEEe
Q 040013 520 ---EFLYGDLRDVANAKKVILESGDVLIFGGKSRRIFHGVEKIFPDTAPKSLLEETSMRRGRLNLTF 583 (586)
Q Consensus 520 ---iFlFg~~~r~e~~~sV~LeSGDLLIM~GeSR~~~HGVPK~k~dt~P~~Ll~e~~lr~~RINLTF 583 (586)
...|-. ......|.++.||+||+-.. .+|.|..+. ++.|+.+++
T Consensus 128 eGGEl~~~~---~~g~~~Vkp~aG~~vlfps~---~lH~v~pVt--------------~G~R~~~~~ 174 (226)
T PRK05467 128 DGGELVIED---TYGEHRVKLPAGDLVLYPST---SLHRVTPVT--------------RGVRVASFF 174 (226)
T ss_pred cCCceEEec---CCCcEEEecCCCeEEEECCC---Cceeeeecc--------------CccEEEEEe
Confidence 111111 11246899999999999853 669998872 567777765
No 13
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit. The holoenzyme has the activity (1.14.11.2 from EC) catalysing the reaction: Procollagen L-proline + 2-oxoglutarate + O2 = procollagen trans-4-hydroxy-L-proline + succinate + CO2. The full enzyme consists of a alpha2 beta2 complex with the alpha subunit contributing most of the parts of the active site []. The family also includes lysyl hydrolases, isopenicillin synthases and AlkB. ; GO: 0016491 oxidoreductase activity, 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process; PDB: 3ON7_D 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=96.78 E-value=0.0012 Score=55.61 Aligned_cols=83 Identities=19% Similarity=0.173 Sum_probs=46.4
Q ss_pred CCEEEEeecC---CCCCccccCCCccccccccCCCCEEEEecC-CceEEEeecccCCCccEEEEcCCCcEEEEcCC----
Q 040013 477 PDICIANFYS---ATGKLGLHQDKDESQESIDKCLPVVSFSIG-DSAEFLYGDLRDVANAKKVILESGDVLIFGGK---- 548 (586)
Q Consensus 477 PDacLVNfY~---pGd~MGwH~Dd~Ese~sL~~~~PIVSLSLG-aSriFlFg~~~r~e~~~sV~LeSGDLLIM~Ge---- 548 (586)
++.+.||+|. .+.++++|.|.. ..+++|-+- ...-+.|.... ....+...++.++|+-|.
T Consensus 1 ~~~~~~~~Y~~~~~~~~~~~H~D~~---------~~~~Til~~~~~~gL~~~~~~---~~~~v~~~~~~~~v~~G~~l~~ 68 (98)
T PF03171_consen 1 PSQLRLNRYPPPENGVGIGPHTDDE---------DGLLTILFQDEVGGLQVRDDG---EWVDVPPPPGGFIVNFGDALEI 68 (98)
T ss_dssp --EEEEEEE-SCCGCEEEEEEEES-----------SSEEEEEETSTS-EEEEETT---EEEE----TTCEEEEEBHHHHH
T ss_pred CCEEEEEECCCcccCCceeCCCcCC---------CCeEEEEecccchheeccccc---cccCccCccceeeeeceeeeec
Confidence 3789999999 668999999983 124444443 56666666542 345556666666666665
Q ss_pred ----c-ccccccCCccCCCCCCCchhhcccCCCCeEEEEeec
Q 040013 549 ----S-RRIFHGVEKIFPDTAPKSLLEETSMRRGRLNLTFRQ 585 (586)
Q Consensus 549 ----S-R~~~HGVPK~k~dt~P~~Ll~e~~lr~~RINLTFRq 585 (586)
. +.++|+|.... ...|+++||+.
T Consensus 69 ~t~g~~~~~~HrV~~~~--------------~~~R~s~~~f~ 96 (98)
T PF03171_consen 69 LTNGRYPATLHRVVPPT--------------EGERYSLTFFL 96 (98)
T ss_dssp HTTTSS----EEEE--S--------------TS-EEEEEEEE
T ss_pred ccCCccCCceeeeEcCC--------------CCCEEEEEEEE
Confidence 4 44559998762 48999999973
No 14
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=96.54 E-value=0.0019 Score=54.37 Aligned_cols=83 Identities=23% Similarity=0.342 Sum_probs=53.2
Q ss_pred EEEeecCCCCCccccCCCccccccccCCCCEEEE--ecC------CceEEEeeccc-CCCccEEEE-----cCCCcEEEE
Q 040013 480 CIANFYSATGKLGLHQDKDESQESIDKCLPVVSF--SIG------DSAEFLYGDLR-DVANAKKVI-----LESGDVLIF 545 (586)
Q Consensus 480 cLVNfY~pGd~MGwH~Dd~Ese~sL~~~~PIVSL--SLG------aSriFlFg~~~-r~e~~~sV~-----LeSGDLLIM 545 (586)
|-||.|.+|+.++||.|..... .-++++ -|- ....+.|-... .......+. .+.|++|||
T Consensus 1 ~~~~~y~~G~~~~~H~D~~~~~------~~~~t~llyL~~~~~~~~GG~l~~~~~~~~~~~~~~~~~~~~~p~~g~~v~F 74 (100)
T PF13640_consen 1 MQLNRYPPGGFFGPHTDNSYDP------HRRVTLLLYLNDPEWEFEGGELEFYPSKDSDDVSREVEDFDIVPKPGRLVIF 74 (100)
T ss_dssp -EEEEEETTEEEEEEESSSCCC------SEEEEEEEESS-CS-HCEE--EEETTTS-TSSTCEEEGGGSEE-BTTEEEEE
T ss_pred CEEEEECcCCEEeeeECCCCCC------cceEEEEEEECCCCcccCCCEEEEeccccCCCcceEEEeccccCCCCEEEEE
Confidence 4589999999999999993211 112222 243 12455555432 222344555 999999999
Q ss_pred cCCcccccccCCccCCCCCCCchhhcccCCCCeEEEEe
Q 040013 546 GGKSRRIFHGVEKIFPDTAPKSLLEETSMRRGRLNLTF 583 (586)
Q Consensus 546 ~GeSR~~~HGVPK~k~dt~P~~Ll~e~~lr~~RINLTF 583 (586)
.+ ...||+|.++ . ....|+.||+
T Consensus 75 ~~--~~~~H~v~~v-~------------~~~~R~~l~~ 97 (100)
T PF13640_consen 75 PS--DNSLHGVTPV-G------------EGGRRYSLTF 97 (100)
T ss_dssp ES--CTCEEEEEEE--------------EESEEEEEEE
T ss_pred eC--CCCeecCccc-C------------CCCCEEEEEE
Confidence 99 8889999998 1 2588999886
No 15
>TIGR01762 chlorin-enz chlorinating enzymes. This model represents a a group of highly homologous enzymes related to dioxygenases which chlorinate amino acid methyl groups. BarB1 and BarB2 are proposed to trichlorinate one of the methyl groups of a leucine residue in the biosynthesis of barbamide in the cyanobacterium Lyngbya majuscula. SyrB2 is proposed to chlorinate the methyl group of threonine in the biosynthesis of syringomycin in Pseudomonas syringae. CmaB is proposed to chlorinate the beta-methyl group of alloisoleucine in the process of ring closure in the biosynthesis of coronamic acid, a component of coronatine also in Pseudomonas syringae.
Probab=93.93 E-value=1.5 Score=45.21 Aligned_cols=28 Identities=14% Similarity=-0.265 Sum_probs=23.2
Q ss_pred ccCCceEEEcCCCCHHHHHHHHHHHHHc
Q 040013 362 SIGAKSNYIEAWYGITEEVKIVKICRDL 389 (586)
Q Consensus 362 ~~~pGLvLLpdFLS~eEQ~~LVk~c~el 389 (586)
....|.++++++|++++-.+|.+++++.
T Consensus 11 y~e~Gyv~~~~~~s~eei~~L~~~~~~~ 38 (288)
T TIGR01762 11 FEKNGFIGPFTLYSPEEMKETWKRIRLR 38 (288)
T ss_pred HHhCCEEeCcCCCCHHHHHHHHHHHHHH
Confidence 4456999999999999988888887653
No 16
>TIGR02408 ectoine_ThpD ectoine hydroxylase. Both ectoine and hydroxyectoine are compatible solvents that serve as protectants against osmotic and thermal stresses. A number of genomes synthesize ectoine. This enzyme allows conversion of ectoine to hydroxyectoine, which may be more effective for some purposes, and is found in a subset of ectoine-producing organisms.
Probab=90.75 E-value=4 Score=41.51 Aligned_cols=29 Identities=7% Similarity=-0.020 Sum_probs=24.6
Q ss_pred cccCCceEEEcCCCCHHHHHHHHHHHHHc
Q 040013 361 LSIGAKSNYIEAWYGITEEVKIVKICRDL 389 (586)
Q Consensus 361 ~~~~pGLvLLpdFLS~eEQ~~LVk~c~el 389 (586)
.+...|.++++++|++++-.+|.+.+...
T Consensus 24 ~f~~dGyvvl~~vls~eev~~lr~~i~~~ 52 (277)
T TIGR02408 24 SYERDGFLLLENLFSDDEVAALLAEVERM 52 (277)
T ss_pred HHHHCCEEECcccCCHHHHHHHHHHHHHH
Confidence 35567999999999999988888888776
No 17
>PF09859 Oxygenase-NA: Oxygenase, catalysing oxidative methylation of damaged DNA; InterPro: IPR018655 This family of various hypothetical prokaryotic proteins, has no known function.
Probab=88.77 E-value=2.2 Score=42.13 Aligned_cols=81 Identities=30% Similarity=0.326 Sum_probs=51.7
Q ss_pred CEEEEeecCCCCCccccCCCccccccccCCCCEE-EEec-C---CceEEEeecccC--CCccEEEEcCCCcEEEEcCCc-
Q 040013 478 DICIANFYSATGKLGLHQDKDESQESIDKCLPVV-SFSI-G---DSAEFLYGDLRD--VANAKKVILESGDVLIFGGKS- 549 (586)
Q Consensus 478 DacLVNfY~pGd~MGwH~Dd~Ese~sL~~~~PIV-SLSL-G---aSriFlFg~~~r--~e~~~sV~LeSGDLLIM~GeS- 549 (586)
-..|+..|.+||...+|+|-.-. +.|-..+| -||= | .-.+|.+.-.+. ...+..+.|.-||.+||.-.-
T Consensus 62 ptplllrY~~gdyn~LHqdlyGe---~vFPlQvv~lLs~Pg~DftGGEFVltEQrPR~QSR~~V~~L~qGda~if~t~~R 138 (173)
T PF09859_consen 62 PTPLLLRYGPGDYNCLHQDLYGE---HVFPLQVVILLSEPGEDFTGGEFVLTEQRPRMQSRAMVLPLRQGDALIFATNHR 138 (173)
T ss_pred CchhhheeCCCCccccccCCCCC---cccCeEEEEEcCCCCCcccCceEEEEEecCCccCccccCCcCCCCEEEEecCCC
Confidence 35678899999999999998432 33333333 2221 1 124666665432 224678999999999998522
Q ss_pred -----ccc----c-ccCCccCC
Q 040013 550 -----RRI----F-HGVEKIFP 561 (586)
Q Consensus 550 -----R~~----~-HGVPK~k~ 561 (586)
|-+ . |||.++..
T Consensus 139 Pv~G~rG~yRv~~RHgVS~vrs 160 (173)
T PF09859_consen 139 PVRGARGYYRVNMRHGVSRVRS 160 (173)
T ss_pred CcCCCccceecccccccccccc
Confidence 333 3 99988743
No 18
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro []. Interestingly TET2 is considered as an oncogene, as it is found mutated in some types of cancer []. This entry represents the double-stranded beta helix (DSBH) fold of the 2-oxoglutarate (2OG) - Fe(II) oxygenases. DSBH comprises a part of the catalytic domain in TETS. It is found in many organisms including fruit fly, African malaria mosquito, zebrafish, mouse and human.
Probab=85.59 E-value=3 Score=40.26 Aligned_cols=80 Identities=21% Similarity=0.292 Sum_probs=49.2
Q ss_pred CccccCCCccccccccCCCCEEEEecC--CceEEEeecccCCCccEEEEcCCCcEEEEcCCcccccccCCccCCCCCCCc
Q 040013 490 KLGLHQDKDESQESIDKCLPVVSFSIG--DSAEFLYGDLRDVANAKKVILESGDVLIFGGKSRRIFHGVEKIFPDTAPKS 567 (586)
Q Consensus 490 ~MGwH~Dd~Ese~sL~~~~PIVSLSLG--aSriFlFg~~~r~e~~~sV~LeSGDLLIM~GeSR~~~HGVPK~k~dt~P~~ 567 (586)
....|.|....... -..++.+-.| ....|.+-..+....-..|.+++|||||+-| +...|||..+.....
T Consensus 86 ~t~~HrD~~~~~~~---~~~~~t~~~gd~~~g~l~lp~~~~~~~g~~~~~~~GtVl~~~~--~~~~Hgvtpv~~~~~--- 157 (171)
T PF12851_consen 86 CTHSHRDTHNMPNG---YDVLCTLGRGDYDGGRLELPGLDPNILGVAFAYQPGTVLIFCA--KRELHGVTPVESPNR--- 157 (171)
T ss_pred CccceecCCCCCCC---eEEEEecCCccccCceEeccccccccCCEEEecCCCcEEEEcc--cceeeecCcccCCCC---
Confidence 56789998554210 1223333333 2344444332222235789999999999975 667799999864211
Q ss_pred hhhcccCCCCeEEEEe
Q 040013 568 LLEETSMRRGRLNLTF 583 (586)
Q Consensus 568 Ll~e~~lr~~RINLTF 583 (586)
....||+|.|
T Consensus 158 ------~~~~R~slvf 167 (171)
T PF12851_consen 158 ------NHGTRISLVF 167 (171)
T ss_pred ------CCCeEEEEEE
Confidence 2589999987
No 19
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown]
Probab=83.53 E-value=22 Score=36.33 Aligned_cols=75 Identities=21% Similarity=0.313 Sum_probs=47.2
Q ss_pred EEEEeecCCCCCccccCCCccccccccCCCCEEEEecCCceEEEeecccCCC----------ccEEEEcCCCcEEEEcCC
Q 040013 479 ICIANFYSATGKLGLHQDKDESQESIDKCLPVVSFSIGDSAEFLYGDLRDVA----------NAKKVILESGDVLIFGGK 548 (586)
Q Consensus 479 acLVNfY~pGd~MGwH~Dd~Ese~sL~~~~PIVSLSLGaSriFlFg~~~r~e----------~~~sV~LeSGDLLIM~Ge 548 (586)
.-+-|.|+.|+..+.|+|..-.. |..+.-- .|+=--+|...+....+-+ .-..|.|+.||++++-++
T Consensus 83 ~P~Fn~Y~eg~~f~fHvDgavr~--~hp~~~~-~lrtdls~tlfl~DPedYdGGeLVv~dtYg~h~VklPAGdLVlypSt 159 (229)
T COG3128 83 PPLFNRYQEGDFFGFHVDGAVRS--IHPGSGF-RLRTDLSCTLFLSDPEDYDGGELVVNDTYGNHRVKLPAGDLVLYPST 159 (229)
T ss_pred CchhhhccCCCcccccccCcccc--cCCCCCc-eeEeeeeeeeecCCccccCCceEEEeccccceEEeccCCCEEEcccc
Confidence 34579999999999999986543 2222211 3333334444444432211 146899999999999877
Q ss_pred cccccccCCcc
Q 040013 549 SRRIFHGVEKI 559 (586)
Q Consensus 549 SR~~~HGVPK~ 559 (586)
+ .|.|..+
T Consensus 160 S---lH~VtPV 167 (229)
T COG3128 160 S---LHEVTPV 167 (229)
T ss_pred c---ceecccc
Confidence 6 4666655
No 20
>TIGR02466 conserved hypothetical protein. This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.
Probab=80.54 E-value=13 Score=37.18 Aligned_cols=121 Identities=16% Similarity=0.113 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCcccccccCCCCCCCEEEEeecCCCCCccccCCCcccccc----ccCCCCEEEEecC
Q 040013 441 VEFHQLVGKAIQDSRALIEKISTGRKDIEAELPCMSPDICIANFYSATGKLGLHQDKDESQES----IDKCLPVVSFSIG 516 (586)
Q Consensus 441 e~L~eLveraa~~A~~L~~~i~~g~~~~e~~~p~~~PDacLVNfY~pGd~MGwH~Dd~Ese~s----L~~~~PIVSLSLG 516 (586)
+.|++|++.+.+.+.+++..+... ..-..+....+=+|.+.+|+..+.|.--.- -.| |.....--.+.|+
T Consensus 64 p~f~~L~~~l~~~v~~~~~~l~~d-----~~~~~l~i~~~W~ni~~~Gg~h~~H~Hp~~-~lSgvyYl~~p~~~g~~~f~ 137 (201)
T TIGR02466 64 PEFAELVQQLDKHVAKFARDLEGD-----NDGLELRIQKAWVNILPQGGTHSPHLHPGS-VISGTYYVQTPENCGAIKFE 137 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCC-----ccccceEEeeEeEEEcCCCCccCceECCCc-eEEEEEEEeCCCCCCceeEe
Confidence 667778877776666666543210 011134567888999999999999986532 100 0000011122333
Q ss_pred CceEEEe-e-----ccc--CCCccEEEEcCCCcEEEEcCCcccccccCCccCCCCCCCchhhcccCCCCeEEEEe
Q 040013 517 DSAEFLY-G-----DLR--DVANAKKVILESGDVLIFGGKSRRIFHGVEKIFPDTAPKSLLEETSMRRGRLNLTF 583 (586)
Q Consensus 517 aSriFlF-g-----~~~--r~e~~~sV~LeSGDLLIM~GeSR~~~HGVPK~k~dt~P~~Ll~e~~lr~~RINLTF 583 (586)
.++.=.+ . ... .......|..+.|+||||=. +-+|+|+.-.. .+.||+|.|
T Consensus 138 ~p~~~~~~~~~~~~~~~~~~~~~~~~v~P~~G~lvlFPS---~L~H~v~p~~~-------------~~~RISiSF 196 (201)
T TIGR02466 138 DPRLDDMMAAPMRIPNAKRAVQRFVYVPPQEGRVLLFES---WLRHEVPPNES-------------EEERISVSF 196 (201)
T ss_pred cCcchhhhccccccCccccccCccEEECCCCCeEEEECC---CCceecCCCCC-------------CCCEEEEEE
Confidence 3322100 0 000 01113457779999999973 34588887533 478999988
No 21
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=71.30 E-value=6.5 Score=41.03 Aligned_cols=69 Identities=26% Similarity=0.348 Sum_probs=43.1
Q ss_pred CEEEEeecC-CCC--CccccCCCccccccccCCCCEEEEecCCceEEEeecccC----------------CCccEEEEcC
Q 040013 478 DICIANFYS-ATG--KLGLHQDKDESQESIDKCLPVVSFSIGDSAEFLYGDLRD----------------VANAKKVILE 538 (586)
Q Consensus 478 DacLVNfY~-pGd--~MGwH~Dd~Ese~sL~~~~PIVSLSLGaSriFlFg~~~r----------------~e~~~sV~Le 538 (586)
-.|-+|.|- +++ ++++|.|..+ |+.|=+-.....++..... .+....+.|+
T Consensus 112 ~~~~~n~Y~tp~g~~g~~~H~D~~d----------vfvlQ~~G~K~W~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 181 (319)
T PF08007_consen 112 CPVGANAYLTPPGSQGFGPHYDDHD----------VFVLQLEGRKRWRLYPPPDEPAPLYSDQPFKQLEEFEPVEEVVLE 181 (319)
T ss_dssp S-EEEEEEEETSSBEESECEE-SSE----------EEEEEEES-EEEEEE-SCCCTTTSSCE--TTTCG--STSEEEEE-
T ss_pred cccceEEEecCCCCCCccCEECCcc----------cEEEECCceeEEEECCCCcccccccCCCCccccccCceeEEEEEC
Confidence 678999995 334 9999999844 5556666777777765210 1235789999
Q ss_pred CCcEEEEcCCcccccccCCcc
Q 040013 539 SGDVLIFGGKSRRIFHGVEKI 559 (586)
Q Consensus 539 SGDLLIM~GeSR~~~HGVPK~ 559 (586)
+||+|.|= |-+||.....
T Consensus 182 pGD~LYlP---rG~~H~~~~~ 199 (319)
T PF08007_consen 182 PGDVLYLP---RGWWHQAVTT 199 (319)
T ss_dssp TT-EEEE----TT-EEEEEES
T ss_pred CCCEEEEC---CCccCCCCCC
Confidence 99999998 8888866543
No 22
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=70.36 E-value=3.5 Score=35.65 Aligned_cols=37 Identities=27% Similarity=0.466 Sum_probs=22.7
Q ss_pred ccEEEEcCCCcEEEEcCCcccccccCCccCCCCCCCchhhcccCCCCeEEEEe
Q 040013 531 NAKKVILESGDVLIFGGKSRRIFHGVEKIFPDTAPKSLLEETSMRRGRLNLTF 583 (586)
Q Consensus 531 ~~~sV~LeSGDLLIM~GeSR~~~HGVPK~k~dt~P~~Ll~e~~lr~~RINLTF 583 (586)
....+..+.|+||||-+ +.+|+|..... ...||+|.|
T Consensus 64 ~~~~~~p~~G~lvlFPs---~l~H~v~p~~~-------------~~~Risisf 100 (101)
T PF13759_consen 64 PYYIVEPEEGDLVLFPS---WLWHGVPPNNS-------------DEERISISF 100 (101)
T ss_dssp SEEEE---TTEEEEEET---TSEEEE----S-------------SS-EEEEEE
T ss_pred ceEEeCCCCCEEEEeCC---CCEEeccCcCC-------------CCCEEEEEc
Confidence 36788999999999984 34588887633 479999987
No 23
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]
Probab=59.17 E-value=1.1e+02 Score=32.50 Aligned_cols=106 Identities=21% Similarity=0.184 Sum_probs=59.2
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHHh----h--ccCcc--cccccCCCCCCCEEEEeecCCC------CCccccCCC
Q 040013 432 DGAVPPIIPVEFHQLVGKAIQDSRALIEK----I--STGRK--DIEAELPCMSPDICIANFYSAT------GKLGLHQDK 497 (586)
Q Consensus 432 dGap~ppiPe~L~eLveraa~~A~~L~~~----i--~~g~~--~~e~~~p~~~PDacLVNfY~pG------d~MGwH~Dd 497 (586)
+...||..|..+.++++.-++...+|... | +.|-. .....+....--..-+|+|++- =+++.|.|.
T Consensus 122 ~~~~wp~~p~~~re~~~eY~~~~~~L~~~l~~~l~eslgl~~~~~~~~~~~~~~~~~r~n~Yp~cp~pe~~lGl~~HtD~ 201 (322)
T KOG0143|consen 122 DPNLWPEGPPEFRETMEEYAKEVMELSEKLLRLLSESLGLEPEYLEKLFGETGGQVMRLNYYPPCPEPELTLGLGAHTDK 201 (322)
T ss_pred CcccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHhhCCccceEEEEeecCCCcCccccccccCccCc
Confidence 44678888888888876554444433332 1 22211 1112222222237789999973 389999998
Q ss_pred ccccccccCCCCEEEEec-CCceEEEeecccCCCccEEEEcCCCcEEEEcCCc
Q 040013 498 DESQESIDKCLPVVSFSI-GDSAEFLYGDLRDVANAKKVILESGDVLIFGGKS 549 (586)
Q Consensus 498 ~Ese~sL~~~~PIVSLSL-GaSriFlFg~~~r~e~~~sV~LeSGDLLIM~GeS 549 (586)
.- |..|-= ....-.++.. .++..+.|..-+|.++|.-|+.
T Consensus 202 ~~----------lTiLlqd~~V~GLQv~~--~dg~Wi~V~P~p~a~vVNiGD~ 242 (322)
T KOG0143|consen 202 SF----------LTILLQDDDVGGLQVFT--KDGKWIDVPPIPGAFVVNIGDM 242 (322)
T ss_pred Cc----------eEEEEccCCcCceEEEe--cCCeEEECCCCCCCEEEEcccH
Confidence 31 111111 1122233332 2446888888889999998754
No 24
>PLN00052 prolyl 4-hydroxylase; Provisional
Probab=55.83 E-value=71 Score=34.09 Aligned_cols=26 Identities=12% Similarity=0.129 Sum_probs=21.9
Q ss_pred CCceEEEcCCCCHHHHHHHHHHHHHc
Q 040013 364 GAKSNYIEAWYGITEEVKIVKICRDL 389 (586)
Q Consensus 364 ~pGLvLLpdFLS~eEQ~~LVk~c~el 389 (586)
.|-++++++|||++|.+.|++..+..
T Consensus 53 ~P~i~~~~nfLs~~Ecd~Li~la~~~ 78 (310)
T PLN00052 53 QPRIFVYKGFLSDAECDHLVKLAKKK 78 (310)
T ss_pred CCCEEEECCcCCHHHHHHHHHhcccc
Confidence 57899999999999999998765443
No 25
>COG2850 Uncharacterized conserved protein [Function unknown]
Probab=52.38 E-value=27 Score=38.46 Aligned_cols=76 Identities=22% Similarity=0.254 Sum_probs=53.8
Q ss_pred cCCCCCCCEEEEeecCCCCCccccCCCccccccccCCCCEEEEecCCceEEEeecccC---------------CCccEEE
Q 040013 471 ELPCMSPDICIANFYSATGKLGLHQDKDESQESIDKCLPVVSFSIGDSAEFLYGDLRD---------------VANAKKV 535 (586)
Q Consensus 471 ~~p~~~PDacLVNfY~pGd~MGwH~Dd~Ese~sL~~~~PIVSLSLGaSriFlFg~~~r---------------~e~~~sV 535 (586)
.+|.|+-|-++|-|=.+|+++|.|.|- .+ |..|=.=..|.-+++.... -+.....
T Consensus 112 flP~wr~ddiMIS~a~~GGgvg~H~D~--YD--------VfliQg~G~RRW~v~~~~~~~~~~~~~d~~~~~~f~~~~d~ 181 (383)
T COG2850 112 FLPDWRIDDIMISFAAPGGGVGPHFDQ--YD--------VFLIQGQGRRRWRVGKKCNMSTLCPHPDLLILAPFEPDIDE 181 (383)
T ss_pred cCccccccceEEEEecCCCccCccccc--hh--------eeEEeecccceeecCCcccccCcCCCcchhhcCCCCchhhh
Confidence 578899999999988889999999996 32 4444444556666665421 1124567
Q ss_pred EcCCCcEEEEcCCcccccccCCc
Q 040013 536 ILESGDVLIFGGKSRRIFHGVEK 558 (586)
Q Consensus 536 ~LeSGDLLIM~GeSR~~~HGVPK 558 (586)
.|++||+|.+ +.|++.+||+-
T Consensus 182 vlepGDiLYi--Pp~~~H~gvae 202 (383)
T COG2850 182 VLEPGDILYI--PPGFPHYGVAE 202 (383)
T ss_pred hcCCCceeec--CCCCCcCCccc
Confidence 8999999887 44666689886
No 26
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family.; InterPro: IPR001330 The beta subunit of the farnesyltransferases is responsible for peptide binding. Squalene-hopene cyclase is a bacterial enzyme that catalyzes the cyclization of squalene into hopene, a key step in hopanoid (triterpenoid) metabolism []. Lanosterol synthase (5.4.99.7 from EC) (oxidosqualene-lanosterol cyclase) catalyzes the cyclization of (S)-2,3-epoxysqualene to lanosterol, the initial precursor of cholesterol, steroid hormones and vitamin D in vertebrates and of ergosterol in fungi []. Cycloartenol synthase () (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ....
Probab=50.26 E-value=3.9 Score=30.82 Aligned_cols=22 Identities=45% Similarity=0.694 Sum_probs=18.8
Q ss_pred CcccCCCCccCCCCCCCCCccc
Q 040013 2 SRQNTRGGFSGRSPLRPDGYYS 23 (586)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~ 23 (586)
++|+..|||+++.--.||.+|+
T Consensus 12 ~~Q~~dGGf~~~~~~~~d~~~t 33 (44)
T PF00432_consen 12 SCQNPDGGFGGRPGGESDTCYT 33 (44)
T ss_dssp HTBBTTSSBBSSTTSSBBHHHH
T ss_pred HHCCCCCCCCCCCCCCCChHHH
Confidence 6899999999998777787775
No 27
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr
Probab=50.03 E-value=6.9 Score=39.93 Aligned_cols=24 Identities=42% Similarity=0.606 Sum_probs=22.0
Q ss_pred CcccCCCCccCCCCCCCCCccccc
Q 040013 2 SRQNTRGGFSGRSPLRPDGYYSHR 25 (586)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~ 25 (586)
+||+..|||+||..-.||++|++-
T Consensus 207 ~~q~~~GGf~gr~~k~~D~~ysf~ 230 (287)
T cd02894 207 ERQLPSGGLNGRPEKLPDVCYSWW 230 (287)
T ss_pred HhCCCCCCcCCCCCCCCchhHhhH
Confidence 689999999999999999999974
No 28
>PLN02216 protein SRG1
Probab=49.50 E-value=1.3e+02 Score=32.31 Aligned_cols=60 Identities=12% Similarity=0.040 Sum_probs=32.5
Q ss_pred CEEEEeecCCC------CCccccCCCccccccccCCCCEEEEecCCceEEEeecccCCCccEEEEcCCCcEEEEcCCc
Q 040013 478 DICIANFYSAT------GKLGLHQDKDESQESIDKCLPVVSFSIGDSAEFLYGDLRDVANAKKVILESGDVLIFGGKS 549 (586)
Q Consensus 478 DacLVNfY~pG------d~MGwH~Dd~Ese~sL~~~~PIVSLSLGaSriFlFg~~~r~e~~~sV~LeSGDLLIM~GeS 549 (586)
...-+|+|++- -+++.|.|-.-- .|+--. ....-..+.+ ++....|.-.+|.+||.-|+.
T Consensus 210 ~~lRl~~YPp~p~~~~~~G~~~HtD~g~l--------TlL~q~-~~v~GLQV~~---~g~Wi~V~p~pgalvVNiGD~ 275 (357)
T PLN02216 210 QSIRMNYYPPCPQPDQVIGLTPHSDAVGL--------TILLQV-NEVEGLQIKK---DGKWVSVKPLPNALVVNVGDI 275 (357)
T ss_pred heeEEeecCCCCCcccccCccCcccCceE--------EEEEec-CCCCceeEEE---CCEEEECCCCCCeEEEEcchh
Confidence 46779999873 278899997211 111100 0111122321 234667777777777776654
No 29
>PLN02947 oxidoreductase
Probab=43.73 E-value=1.7e+02 Score=31.71 Aligned_cols=59 Identities=15% Similarity=0.050 Sum_probs=32.8
Q ss_pred CEEEEeecCCC------CCccccCCCccccccccCCCCEEEEecCCceEEEeecccCCCccEEEEcCCCcEEEEcCCc
Q 040013 478 DICIANFYSAT------GKLGLHQDKDESQESIDKCLPVVSFSIGDSAEFLYGDLRDVANAKKVILESGDVLIFGGKS 549 (586)
Q Consensus 478 DacLVNfY~pG------d~MGwH~Dd~Ese~sL~~~~PIVSLSLGaSriFlFg~~~r~e~~~sV~LeSGDLLIM~GeS 549 (586)
...-+|+|++. -+++.|.|-.- ..|-....+ | -.++.. ++....|...+|.+||--|+.
T Consensus 225 ~~lrln~YPp~p~~~~~~G~~~HTD~g~--lTlL~Qd~v-----~---GLQV~~---~g~Wi~V~p~pga~VVNvGD~ 289 (374)
T PLN02947 225 QMMVVNCYPACPEPELTLGMPPHSDYGF--LTLLLQDEV-----E---GLQIMH---AGRWVTVEPIPGSFVVNVGDH 289 (374)
T ss_pred eeeeeecCCCCCCcccccCCCCccCCCc--eEEEEecCC-----C---CeeEeE---CCEEEeCCCCCCeEEEEeCce
Confidence 46789999973 26889999722 111111111 1 122222 234667777777777776654
No 30
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=43.26 E-value=1.3e+02 Score=30.87 Aligned_cols=58 Identities=17% Similarity=0.068 Sum_probs=34.4
Q ss_pred EEEEeecCCC------CCccccCCCccccccccCCCCEEEEecCCceEEEeecccCCCccEEEEcCCCcEEEEcCCc
Q 040013 479 ICIANFYSAT------GKLGLHQDKDESQESIDKCLPVVSFSIGDSAEFLYGDLRDVANAKKVILESGDVLIFGGKS 549 (586)
Q Consensus 479 acLVNfY~pG------d~MGwH~Dd~Ese~sL~~~~PIVSLSLGaSriFlFg~~~r~e~~~sV~LeSGDLLIM~GeS 549 (586)
..-+|+|++- -+++.|.|-.- |..|-=....-..+.. ++..+.|.-.+|.+||.-|+.
T Consensus 117 ~lrl~~YP~~~~~~~~~g~~~HtD~g~----------lTlL~qd~v~GLqV~~---~g~Wi~V~p~p~a~vVNiGD~ 180 (262)
T PLN03001 117 NITVSYYPPCPQPELTLGLQSHSDFGA----------ITLLIQDDVEGLQLLK---DAEWLMVPPISDAILIIIADQ 180 (262)
T ss_pred hheeecCCCCCCcccccCCcCCcCCCe----------eEEEEeCCCCceEEee---CCeEEECCCCCCcEEEEccHH
Confidence 4679999873 36889999721 1111111111123321 345778888889999988876
No 31
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=42.61 E-value=2.1e+02 Score=30.42 Aligned_cols=61 Identities=15% Similarity=0.077 Sum_probs=35.5
Q ss_pred CEEEEeecCCC------CCccccCCCccccccccCCCCEEEEecCCceEEEeecccCCCccEEEEcCCCcEEEEcCCc
Q 040013 478 DICIANFYSAT------GKLGLHQDKDESQESIDKCLPVVSFSIGDSAEFLYGDLRDVANAKKVILESGDVLIFGGKS 549 (586)
Q Consensus 478 DacLVNfY~pG------d~MGwH~Dd~Ese~sL~~~~PIVSLSLGaSriFlFg~~~r~e~~~sV~LeSGDLLIM~GeS 549 (586)
...-+|+|++- -++++|.|-.- ..|-.... .| -..+... .++....|...+|.+||--|+.
T Consensus 193 ~~lR~~~YPp~~~~~~~~g~~~HtD~g~--lTlL~qd~-----v~---GLQV~~~-~~g~Wi~V~p~pg~~vVNiGD~ 259 (345)
T PLN02750 193 SFARFNHYPPCPAPHLALGVGRHKDGGA--LTVLAQDD-----VG---GLQISRR-SDGEWIPVKPIPDAFIINIGNC 259 (345)
T ss_pred eEEEEEecCCCCCcccccCcCCCCCCCe--EEEEecCC-----CC---ceEEeec-CCCeEEEccCCCCeEEEEhHHH
Confidence 35678999863 27899999721 11111111 11 1222111 2345788888999999988865
No 32
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase
Probab=40.32 E-value=1.7e+02 Score=31.46 Aligned_cols=61 Identities=16% Similarity=0.083 Sum_probs=36.2
Q ss_pred CEEEEeecCCC------CCccccCCCccccccccCCCCEEEEecCCceEEEeecccCCCccEEEEcCCCcEEEEcCCc
Q 040013 478 DICIANFYSAT------GKLGLHQDKDESQESIDKCLPVVSFSIGDSAEFLYGDLRDVANAKKVILESGDVLIFGGKS 549 (586)
Q Consensus 478 DacLVNfY~pG------d~MGwH~Dd~Ese~sL~~~~PIVSLSLGaSriFlFg~~~r~e~~~sV~LeSGDLLIM~GeS 549 (586)
..+.+|+|++- -+++.|.|-.-- .|-....+ | -..+... ..+....|...+|.+||.-|+.
T Consensus 195 ~~lrl~~YP~~~~~~~~~G~~~HTD~g~l--TlL~Qd~v-----~---GLQV~~~-~~~~Wi~Vpp~pgalVVNiGD~ 261 (358)
T PLN02515 195 QKVVVNYYPKCPQPDLTLGLKRHTDPGTI--TLLLQDQV-----G---GLQATRD-GGKTWITVQPVEGAFVVNLGDH 261 (358)
T ss_pred ceEEEeecCCCCChhhccCCCCCCCCCeE--EEEecCCC-----C---ceEEEEC-CCCeEEECCCCCCeEEEEccHH
Confidence 36789999872 278899997221 11111111 1 1222221 2235788888999999998875
No 33
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=38.74 E-value=2.2e+02 Score=30.16 Aligned_cols=60 Identities=17% Similarity=0.087 Sum_probs=35.9
Q ss_pred CEEEEeecCCC------CCccccCCCccccccccCCCCEEEEecCCceEEEeecccCCCccEEEEcCCCcEEEEcCCc
Q 040013 478 DICIANFYSAT------GKLGLHQDKDESQESIDKCLPVVSFSIGDSAEFLYGDLRDVANAKKVILESGDVLIFGGKS 549 (586)
Q Consensus 478 DacLVNfY~pG------d~MGwH~Dd~Ese~sL~~~~PIVSLSLGaSriFlFg~~~r~e~~~sV~LeSGDLLIM~GeS 549 (586)
..+-+|+|++- -+++.|.|-.-- .|-+... ..| -..+. +++....|...+|.+||.-|+.
T Consensus 190 ~~lrl~~YP~~~~~~~~~g~~~HTD~g~l--TlL~qd~----~v~---GLQV~---~~g~Wi~V~p~pg~lVVNiGD~ 255 (337)
T PLN02639 190 QHMAVNYYPPCPEPELTYGLPAHTDPNAL--TILLQDQ----QVA---GLQVL---KDGKWVAVNPHPGAFVINIGDQ 255 (337)
T ss_pred cEEEEEcCCCCCCcccccCCCCCcCCCce--EEEEecC----CcC---ceEee---cCCeEEeccCCCCeEEEechhH
Confidence 46778999873 268899997211 0111100 011 12332 1345888889999999998875
No 34
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional
Probab=38.26 E-value=14 Score=38.65 Aligned_cols=24 Identities=42% Similarity=0.617 Sum_probs=21.8
Q ss_pred CcccCCCCccCCCCCCCCCccccc
Q 040013 2 SRQNTRGGFSGRSPLRPDGYYSHR 25 (586)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~ 25 (586)
.||...|||+||.--.||++||.-
T Consensus 211 ~rQ~~~GGf~grp~k~~D~cys~w 234 (316)
T PLN03201 211 ERQVKSGGLNGRPEKLPDVCYSWW 234 (316)
T ss_pred HhCCCCCCcCCCCCCCCchHHHHH
Confidence 589888999999999999999975
No 35
>PLN02904 oxidoreductase
Probab=38.17 E-value=2e+02 Score=30.91 Aligned_cols=58 Identities=19% Similarity=0.150 Sum_probs=36.6
Q ss_pred EEEEeecCCC------CCccccCCCccccccccCCCCEEEEecCCceEEEeecccCCCccEEEEcCCCcEEEEcCCc
Q 040013 479 ICIANFYSAT------GKLGLHQDKDESQESIDKCLPVVSFSIGDSAEFLYGDLRDVANAKKVILESGDVLIFGGKS 549 (586)
Q Consensus 479 acLVNfY~pG------d~MGwH~Dd~Ese~sL~~~~PIVSLSLGaSriFlFg~~~r~e~~~sV~LeSGDLLIM~GeS 549 (586)
..-+|+|++- -+++.|.|-.-- .|. +-...-.++.. +++....|...+|.+||.-|+.
T Consensus 209 ~lrl~~YPp~p~~~~~~g~~~HtD~g~l--------TlL---~qd~~GLQV~~--~~g~Wi~V~p~pgalVVNiGD~ 272 (357)
T PLN02904 209 VMAVNCYPACPEPEIALGMPPHSDFGSL--------TIL---LQSSQGLQIMD--CNKNWVCVPYIEGALIVQLGDQ 272 (357)
T ss_pred EEEeeecCCCCCcccccCCcCccCCCce--------EEE---ecCCCeeeEEe--CCCCEEECCCCCCeEEEEccHH
Confidence 5779999873 378899997221 111 11112233332 2345889999999999999975
No 36
>TIGR00568 alkb DNA alkylation damage repair protein AlkB. Proteins in this family have an as of yet undetermined function in the repair of alkylation damage to DNA. Alignment and family designation based on phylogenomic analysis of Jonathan A. Eisen (PhD Thesis, Stanford University, 1999).
Probab=36.93 E-value=38 Score=32.97 Aligned_cols=20 Identities=25% Similarity=0.360 Sum_probs=14.5
Q ss_pred ccEEEEcCCCcEEEEcCCcc
Q 040013 531 NAKKVILESGDVLIFGGKSR 550 (586)
Q Consensus 531 ~~~sV~LeSGDLLIM~GeSR 550 (586)
.+.+|-|..--++.|++..|
T Consensus 122 pI~SvSLG~~r~F~~~~~~~ 141 (169)
T TIGR00568 122 PLLSVSLGLPAIFLIGGLKR 141 (169)
T ss_pred CEEEEeCCCCEEEEecCCcC
Confidence 46778887777788877654
No 37
>PRK10572 DNA-binding transcriptional regulator AraC; Provisional
Probab=36.59 E-value=1.3e+02 Score=30.06 Aligned_cols=72 Identities=18% Similarity=0.256 Sum_probs=51.0
Q ss_pred ccCCCCCCCEEEEeecC---CCCCccccCCCccccccccCCCCEEEEecCCceEEEeecccCCCccEEEEcCCCcEEEEc
Q 040013 470 AELPCMSPDICIANFYS---ATGKLGLHQDKDESQESIDKCLPVVSFSIGDSAEFLYGDLRDVANAKKVILESGDVLIFG 546 (586)
Q Consensus 470 ~~~p~~~PDacLVNfY~---pGd~MGwH~Dd~Ese~sL~~~~PIVSLSLGaSriFlFg~~~r~e~~~sV~LeSGDLLIM~ 546 (586)
..+|+|.||+.+|.--. +++.+..+.|+... ...-++.+-+.....|..+. ..+.+++||++++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~r~~~-----~~~~~i~~~~~G~~~~~~~~-------~~~~~~~g~~i~i~ 80 (290)
T PRK10572 13 PLLPGYSFNAHLVAGLTPIEAGGYLDFFIDRPLG-----MKGYILNLTIRGQGVIFNGG-------RAFVCRPGDLLLFP 80 (290)
T ss_pred cCCCCCCcceeeeecccccccCCccceeeecCCC-----ccceEEEEEEeccEEEecCC-------eeEecCCCCEEEEC
Confidence 45689999988876554 35678889987442 44567777777777776543 25789999999998
Q ss_pred CCccccc
Q 040013 547 GKSRRIF 553 (586)
Q Consensus 547 GeSR~~~ 553 (586)
...-+.|
T Consensus 81 p~~~h~~ 87 (290)
T PRK10572 81 PGEIHHY 87 (290)
T ss_pred CCCceee
Confidence 7665444
No 38
>PLN02156 gibberellin 2-beta-dioxygenase
Probab=34.66 E-value=3.4e+02 Score=29.03 Aligned_cols=60 Identities=13% Similarity=0.089 Sum_probs=35.2
Q ss_pred CEEEEeecCCC--------CCccccCCCccccccccCCCCEEEEecCCceEEEeecccCCCccEEEEcCCCcEEEEcCCc
Q 040013 478 DICIANFYSAT--------GKLGLHQDKDESQESIDKCLPVVSFSIGDSAEFLYGDLRDVANAKKVILESGDVLIFGGKS 549 (586)
Q Consensus 478 DacLVNfY~pG--------d~MGwH~Dd~Ese~sL~~~~PIVSLSLGaSriFlFg~~~r~e~~~sV~LeSGDLLIM~GeS 549 (586)
...-+|+|++- -+++.|.|-.- ..|-.... .|. ..+.. +++....|.-.+|.+||--|+.
T Consensus 178 ~~lRl~~YP~~~~~~~~~~~g~~~HTD~g~--lTlL~Qd~-----v~G---LQV~~--~~g~Wi~Vpp~pga~VVNiGD~ 245 (335)
T PLN02156 178 SCLRMNHYPEKEETPEKVEIGFGEHTDPQL--ISLLRSND-----TAG---LQICV--KDGTWVDVPPDHSSFFVLVGDT 245 (335)
T ss_pred ceEeEEeCCCCCCCccccccCCCCccCCCc--eEEEEeCC-----CCc---eEEEe--CCCCEEEccCCCCcEEEEhHHH
Confidence 46778999763 15778999621 11111111 111 22221 2345888999999999998875
No 39
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=31.06 E-value=2e+02 Score=30.91 Aligned_cols=59 Identities=15% Similarity=0.049 Sum_probs=34.3
Q ss_pred EEEEeecCCC------CCccccCCCccccccccCCCCEEEEecC-CceEEEeecccCCCccEEEEcCCCcEEEEcCCc
Q 040013 479 ICIANFYSAT------GKLGLHQDKDESQESIDKCLPVVSFSIG-DSAEFLYGDLRDVANAKKVILESGDVLIFGGKS 549 (586)
Q Consensus 479 acLVNfY~pG------d~MGwH~Dd~Ese~sL~~~~PIVSLSLG-aSriFlFg~~~r~e~~~sV~LeSGDLLIM~GeS 549 (586)
..-+|+|++- -+++.|.|-.-- .|. +.=+ ..--+++.. ++....|.-.+|.+||.-|+.
T Consensus 212 ~lR~~~YP~~~~~~~~~g~~~HtD~g~l--------TlL-~qd~~~v~GLQV~~---~g~Wi~V~p~pgalVVNiGD~ 277 (361)
T PLN02758 212 AVRMNYYPPCSRPDLVLGLSPHSDGSAL--------TVL-QQGKGSCVGLQILK---DNTWVPVHPVPNALVINIGDT 277 (361)
T ss_pred eeeeecCCCCCCcccccCccCccCCcee--------EEE-EeCCCCCCCeeeee---CCEEEeCCCCCCeEEEEccch
Confidence 4458999863 268899997211 011 1100 001133322 245788888899999988876
No 40
>KOG1591 consensus Prolyl 4-hydroxylase alpha subunit [Amino acid transport and metabolism]
Probab=30.24 E-value=3.6e+02 Score=28.77 Aligned_cols=69 Identities=17% Similarity=0.224 Sum_probs=43.7
Q ss_pred cCCCCCCCEEEEeecCCCCCccccCCCc---ccc--ccccCCCCEEEEecCCceEEEeecccCCCc------cE--EEEc
Q 040013 471 ELPCMSPDICIANFYSATGKLGLHQDKD---ESQ--ESIDKCLPVVSFSIGDSAEFLYGDLRDVAN------AK--KVIL 537 (586)
Q Consensus 471 ~~p~~~PDacLVNfY~pGd~MGwH~Dd~---Ese--~sL~~~~PIVSLSLGaSriFlFg~~~r~e~------~~--sV~L 537 (586)
.++--..+..-|=-|..|+.-.+|.|-- +.+ ..+..+..|+ +..|.+.....+.. .. .|..
T Consensus 169 ~l~~e~~E~lqVlnYg~Gg~Y~~H~D~~~~~~~~~~~~~~~g~Ria------T~l~yls~v~~GG~TvFP~~~~~~~V~P 242 (289)
T KOG1591|consen 169 GLPVENGESLQVLNYGLGGHYEPHYDYFLPEEDETFNGLNGGNRIA------TVLMYLSDVEQGGETVFPNLGMKPAVKP 242 (289)
T ss_pred CCCcccCccceEEEecCCccccccccccccccchhhhhcccCCcce------eEEEEecccCCCCcccCCCCCCcccccC
Confidence 4555566777788899999999998875 211 1122234443 44566665543321 23 7889
Q ss_pred CCCcEEEE
Q 040013 538 ESGDVLIF 545 (586)
Q Consensus 538 eSGDLLIM 545 (586)
.-||.|.+
T Consensus 243 kkGdal~w 250 (289)
T KOG1591|consen 243 KKGDALFW 250 (289)
T ss_pred CCCCeeEE
Confidence 99999987
No 41
>COG3826 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.72 E-value=2.2e+02 Score=29.35 Aligned_cols=79 Identities=24% Similarity=0.304 Sum_probs=50.2
Q ss_pred EEEEeecCCCCCccccCCCccccccccCCCCEEEEecCC------ceEEEeecccCC--CccEEEEcCCCcEEEEcCC--
Q 040013 479 ICIANFYSATGKLGLHQDKDESQESIDKCLPVVSFSIGD------SAEFLYGDLRDV--ANAKKVILESGDVLIFGGK-- 548 (586)
Q Consensus 479 acLVNfY~pGd~MGwH~Dd~Ese~sL~~~~PIVSLSLGa------SriFlFg~~~r~--e~~~sV~LeSGDLLIM~Ge-- 548 (586)
..|+=.|-+||--.+|+|--- | |.|-..++. -|-. -.+|.+...+.. ..+..|.|+-||-+||.-.
T Consensus 125 TpLlLqYgpgD~NcLHQDLYG-e--lvFPLQvai-lLsePg~DfTGGEF~lvEQRPR~QSr~~vvpLrqG~g~vFavr~R 200 (236)
T COG3826 125 TPLLLQYGPGDYNCLHQDLYG-E--LVFPLQVAI-LLSEPGTDFTGGEFVLVEQRPRMQSRPTVVPLRQGDGVVFAVRDR 200 (236)
T ss_pred CceeEEecCCccchhhhhhhh-c--eeeeeeEEE-eccCCCCcccCceEEEEecccccccCCceeeccCCceEEEEeecC
Confidence 345667999999999999843 2 555444442 2332 245666544322 2467899999999999731
Q ss_pred ----cccc----c-ccCCccCC
Q 040013 549 ----SRRI----F-HGVEKIFP 561 (586)
Q Consensus 549 ----SR~~----~-HGVPK~k~ 561 (586)
+|-| . |||.++..
T Consensus 201 Pv~gtrG~~r~~lRHGvS~lRS 222 (236)
T COG3826 201 PVQGTRGWYRVPLRHGVSRLRS 222 (236)
T ss_pred cccCccCccccchhcchhhhhc
Confidence 2333 3 88887754
No 42
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=29.46 E-value=3.7e+02 Score=28.78 Aligned_cols=59 Identities=12% Similarity=0.001 Sum_probs=35.2
Q ss_pred CEEEEeecCCC------CCccccCCCccccccccCCCCEEEEecCCceEEEeecccCCCccEEEEcCCCcEEEEcCCc
Q 040013 478 DICIANFYSAT------GKLGLHQDKDESQESIDKCLPVVSFSIGDSAEFLYGDLRDVANAKKVILESGDVLIFGGKS 549 (586)
Q Consensus 478 DacLVNfY~pG------d~MGwH~Dd~Ese~sL~~~~PIVSLSLGaSriFlFg~~~r~e~~~sV~LeSGDLLIM~GeS 549 (586)
...-+|+|++- -+++.|.|-.-- .|-.... .|. ..+. +++....|...+|.+||--|+.
T Consensus 197 ~~lrl~~YPp~~~~~~~~G~~~HtD~g~l--TlL~Qd~-----v~G---LQV~---~~g~Wi~V~p~pgalvVNiGD~ 261 (348)
T PLN02912 197 QHMAINYYPPCPQPELTYGLPGHKDANLI--TVLLQDE-----VSG---LQVF---KDGKWIAVNPIPNTFIVNLGDQ 261 (348)
T ss_pred ceeeeeecCCCCChhhcCCcCCCcCCCce--EEEEECC-----CCc---eEEE---ECCcEEECCCcCCeEEEEcCHH
Confidence 46778999973 268899997221 1111111 111 2222 1245788888889999888875
No 43
>PLN02365 2-oxoglutarate-dependent dioxygenase
Probab=29.34 E-value=2.7e+02 Score=29.03 Aligned_cols=61 Identities=16% Similarity=0.084 Sum_probs=36.1
Q ss_pred CEEEEeecCCC------CCccccCCCccccccccCCCCEEEE-ecCCceEEEeecccCCCccEEEEcCCCcEEEEcCCc
Q 040013 478 DICIANFYSAT------GKLGLHQDKDESQESIDKCLPVVSF-SIGDSAEFLYGDLRDVANAKKVILESGDVLIFGGKS 549 (586)
Q Consensus 478 DacLVNfY~pG------d~MGwH~Dd~Ese~sL~~~~PIVSL-SLGaSriFlFg~~~r~e~~~sV~LeSGDLLIM~GeS 549 (586)
...-+|+|++- -+++.|.|-.- |..| .=+...-.++... .++....|...+|.+||.-|+.
T Consensus 149 ~~lr~~~YP~~p~~~~~~g~~~HtD~g~----------lTlL~qd~~~~GLqV~~~-~~g~Wi~V~p~pga~vVNiGD~ 216 (300)
T PLN02365 149 SQFRINKYNFTPETVGSSGVQIHTDSGF----------LTILQDDENVGGLEVMDP-SSGEFVPVDPLPGTLLVNLGDV 216 (300)
T ss_pred cceeeeecCCCCCccccccccCccCCCc----------eEEEecCCCcCceEEEEC-CCCeEEecCCCCCeEEEEhhHH
Confidence 46678999552 37888999721 1111 1010112333221 1345888999999999998876
No 44
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. These proteins are heterodimers of alpha and beta subunits. Both subunits are required for catalytic activity. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids. Ftase attaches a 15-carbon farnesyl group to the cysteine within the C-terminal CaaX motif of substrate proteins when X is Ala, Met, Ser, Cys or Gln. Protein farnesylation has been shown to play critical roles in a variety of cellular pro
Probab=29.07 E-value=23 Score=36.81 Aligned_cols=23 Identities=48% Similarity=0.774 Sum_probs=20.7
Q ss_pred CcccC-CCCccCCCCCCCCCcccc
Q 040013 2 SRQNT-RGGFSGRSPLRPDGYYSH 24 (586)
Q Consensus 2 ~~~~~-~~~~~~~~~~~~~~~~~~ 24 (586)
+||.. .|||.||.---||.+|++
T Consensus 205 ~~q~~~~GGf~grp~k~~D~cys~ 228 (299)
T cd02893 205 ARQMRFEGGFQGRTNKLVDGCYSF 228 (299)
T ss_pred hhcCCCCCCcCCCCCCCCccHHHH
Confidence 57877 899999999999999996
No 45
>PLN02393 leucoanthocyanidin dioxygenase like protein
Probab=27.10 E-value=2.4e+02 Score=30.30 Aligned_cols=59 Identities=14% Similarity=0.084 Sum_probs=34.1
Q ss_pred EEEEeecCCC------CCccccCCCccccccccCCCCEEEEecCCceEEEeecccCCCccEEEEcCCCcEEEEcCCc
Q 040013 479 ICIANFYSAT------GKLGLHQDKDESQESIDKCLPVVSFSIGDSAEFLYGDLRDVANAKKVILESGDVLIFGGKS 549 (586)
Q Consensus 479 acLVNfY~pG------d~MGwH~Dd~Ese~sL~~~~PIVSLSLGaSriFlFg~~~r~e~~~sV~LeSGDLLIM~GeS 549 (586)
..-+|+|++- -+++.|.|-.-- .|+ +.=....-+.+. .++....|.-.+|.+||.-|+.
T Consensus 214 ~lRl~~YP~~p~~~~~~g~~~HtD~g~l--------TlL-~q~~~v~GLQV~---~~g~W~~V~p~pgalVVNiGD~ 278 (362)
T PLN02393 214 CLRVNYYPKCPQPDLTLGLSPHSDPGGM--------TIL-LPDDNVAGLQVR---RDDAWITVKPVPDAFIVNIGDQ 278 (362)
T ss_pred eeeeeecCCCCCcccccccccccCCceE--------EEE-eeCCCCCcceee---ECCEEEECCCCCCeEEEEcchh
Confidence 4557999752 278999997211 011 100111112232 1245788888999999998875
No 46
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits r
Probab=27.02 E-value=33 Score=35.83 Aligned_cols=24 Identities=38% Similarity=0.534 Sum_probs=21.7
Q ss_pred CcccCCCCccCCCCCCCCCccccc
Q 040013 2 SRQNTRGGFSGRSPLRPDGYYSHR 25 (586)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~ 25 (586)
+||+..|||+||.--.||++|+.-
T Consensus 227 ~rQ~~~GGF~gr~~k~~D~cysfw 250 (307)
T cd02895 227 HRQVSGTGFNGRPNKPADTCYSFW 250 (307)
T ss_pred HhcCCCCCcCCCCCCCCccchhhH
Confidence 589999999999999999999864
No 47
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=26.95 E-value=38 Score=32.31 Aligned_cols=26 Identities=38% Similarity=0.611 Sum_probs=19.8
Q ss_pred ccEEEEcCCCcEEEEcCCcccccccCCcc
Q 040013 531 NAKKVILESGDVLIFGGKSRRIFHGVEKI 559 (586)
Q Consensus 531 ~~~sV~LeSGDLLIM~GeSR~~~HGVPK~ 559 (586)
....+.|++||+|.+= ..|||.|-..
T Consensus 207 ~~~~~~l~pGD~LfiP---~gWwH~V~~~ 232 (251)
T PF13621_consen 207 PPYEVVLEPGDVLFIP---PGWWHQVENL 232 (251)
T ss_dssp -EEEEEEETT-EEEE----TT-EEEEEES
T ss_pred ceeEEEECCCeEEEEC---CCCeEEEEEc
Confidence 3689999999999998 8899999865
No 48
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=26.13 E-value=6.7e+02 Score=26.95 Aligned_cols=59 Identities=15% Similarity=0.027 Sum_probs=35.3
Q ss_pred CEEEEeecCCC------CCccccCCCccccccccCCCCEEEEecCCceEEEeecccCCCccEEEEcCCCcEEEEcCCc
Q 040013 478 DICIANFYSAT------GKLGLHQDKDESQESIDKCLPVVSFSIGDSAEFLYGDLRDVANAKKVILESGDVLIFGGKS 549 (586)
Q Consensus 478 DacLVNfY~pG------d~MGwH~Dd~Ese~sL~~~~PIVSLSLGaSriFlFg~~~r~e~~~sV~LeSGDLLIM~GeS 549 (586)
...-+|+|++. -+++.|.|-.-- .|-+...+- | .++. .+.....|...+|.+||.-|+.
T Consensus 200 ~~lRl~~YPp~~~~~~~~g~~aHTD~g~l--TlL~Qd~v~----G----LQV~---~~g~Wv~V~p~pgalVVNiGD~ 264 (341)
T PLN02984 200 GVIRVYRYPQCSNEAEAPGMEVHTDSSVI--SILNQDEVG----G----LEVM---KDGEWFNVKPIANTLVVNLGDM 264 (341)
T ss_pred ceEEEEeCCCCCCcccccCccCccCCCce--EEEEeCCCC----C----eeEe---eCCceEECCCCCCeEEEECChh
Confidence 37889999873 278899997221 111111111 1 2222 1345778888888888888875
No 49
>PLN02485 oxidoreductase
Probab=25.98 E-value=5.9e+02 Score=26.76 Aligned_cols=60 Identities=15% Similarity=0.011 Sum_probs=35.4
Q ss_pred EEEEeecCCC----------CCccccCCCccccccccCCCCEEEEecCCceEEEeecccCCCccEEEEcCCCcEEEEcCC
Q 040013 479 ICIANFYSAT----------GKLGLHQDKDESQESIDKCLPVVSFSIGDSAEFLYGDLRDVANAKKVILESGDVLIFGGK 548 (586)
Q Consensus 479 acLVNfY~pG----------d~MGwH~Dd~Ese~sL~~~~PIVSLSLGaSriFlFg~~~r~e~~~sV~LeSGDLLIM~Ge 548 (586)
..-+|+|++- -++++|.|-.- | .|+ +.=+...-..+.. +++..+.|...+|.+||.-|+
T Consensus 185 ~lrl~~YP~~~~~~~~~~~~~g~~~HTD~g~----l----TlL-~qd~~~~GLqV~~--~~g~Wi~V~p~pg~~vVNiGD 253 (329)
T PLN02485 185 VMRIIGYPGVSNLNGPPENDIGCGAHTDYGL----L----TLV-NQDDDITALQVRN--LSGEWIWAIPIPGTFVCNIGD 253 (329)
T ss_pred eEEEEeCCCCccccCCcccCcccccccCCCe----E----EEE-eccCCCCeeeEEc--CCCcEEECCCCCCcEEEEhHH
Confidence 5789999863 26889999721 1 111 0101111233332 234578888899999998886
Q ss_pred c
Q 040013 549 S 549 (586)
Q Consensus 549 S 549 (586)
+
T Consensus 254 ~ 254 (329)
T PLN02485 254 M 254 (329)
T ss_pred H
Confidence 5
No 50
>PLN02710 farnesyltranstransferase subunit beta
Probab=25.09 E-value=32 Score=38.38 Aligned_cols=23 Identities=48% Similarity=0.758 Sum_probs=21.2
Q ss_pred CcccCCCCccCCCCCCCCCcccc
Q 040013 2 SRQNTRGGFSGRSPLRPDGYYSH 24 (586)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~ 24 (586)
+||+.-|||.||.---+|+.||.
T Consensus 250 ~rQ~~~GGF~GR~nKl~D~CYSf 272 (439)
T PLN02710 250 FRQGVEGGFQGRTNKLVDGCYSF 272 (439)
T ss_pred HhcCcCCCcCCCCCCCCCchhhH
Confidence 68998999999999999999994
No 51
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits re
Probab=24.93 E-value=35 Score=34.29 Aligned_cols=24 Identities=42% Similarity=0.587 Sum_probs=21.0
Q ss_pred CcccCCC-CccCCCCCCCCCccccc
Q 040013 2 SRQNTRG-GFSGRSPLRPDGYYSHR 25 (586)
Q Consensus 2 ~~~~~~~-~~~~~~~~~~~~~~~~~ 25 (586)
+||+..| ||+||.---||++|++-
T Consensus 205 ~~q~~~ggGf~g~~~~~~d~~yt~~ 229 (286)
T cd02890 205 ERQLASGGGFNGRPNKLVDTCYSFW 229 (286)
T ss_pred HhCCCCCCCcCCCCCCCCccchhhH
Confidence 5888887 99999988999999874
No 52
>PLN02704 flavonol synthase
Probab=23.35 E-value=2.8e+02 Score=29.37 Aligned_cols=58 Identities=17% Similarity=0.069 Sum_probs=34.0
Q ss_pred EEEEeecCCC------CCccccCCCccccccccCCCCEEEEecCCceEEEeecccCCCccEEEEcCCCcEEEEcCCc
Q 040013 479 ICIANFYSAT------GKLGLHQDKDESQESIDKCLPVVSFSIGDSAEFLYGDLRDVANAKKVILESGDVLIFGGKS 549 (586)
Q Consensus 479 acLVNfY~pG------d~MGwH~Dd~Ese~sL~~~~PIVSLSLGaSriFlFg~~~r~e~~~sV~LeSGDLLIM~GeS 549 (586)
..-+|+|++- -+++.|.|-.-- .|-+...+- | ..+.. ++....|...+|.+||.-|+.
T Consensus 200 ~lrl~~YP~~~~~~~~~g~~~HtD~g~l--TlL~qd~v~----G----LQV~~---~g~Wi~V~p~pg~lvVNvGD~ 263 (335)
T PLN02704 200 LLKINYYPPCPRPDLALGVVAHTDMSAI--TILVPNEVQ----G----LQVFR---DDHWFDVKYIPNALVIHIGDQ 263 (335)
T ss_pred hhhhhcCCCCCCcccccCccCccCCcce--EEEecCCCC----c----eeEeE---CCEEEeCCCCCCeEEEEechH
Confidence 3557999862 268899997221 111111111 1 22221 345788888899999988865
No 53
>KOG1324 consensus Dihydrofolate reductase [Coenzyme transport and metabolism]
Probab=21.97 E-value=83 Score=31.92 Aligned_cols=28 Identities=25% Similarity=0.634 Sum_probs=22.6
Q ss_pred cEEEEcCCcccccccCCccCCCCCCCchhhcccCCCCeEEEEe
Q 040013 541 DVLIFGGKSRRIFHGVEKIFPDTAPKSLLEETSMRRGRLNLTF 583 (586)
Q Consensus 541 DLLIM~GeSR~~~HGVPK~k~dt~P~~Ll~e~~lr~~RINLTF 583 (586)
-++||| |.+|-+||..... -..||||-+
T Consensus 47 NaViMG---RKtweSiP~k~RP------------L~gRiNiVL 74 (190)
T KOG1324|consen 47 NAVIMG---RKTWESIPEKFRP------------LPGRINVVL 74 (190)
T ss_pred eeEEec---ccccccCCcccCC------------CCCceEEEE
Confidence 368999 9999999987553 588999864
No 54
>PLN02403 aminocyclopropanecarboxylate oxidase
Probab=21.28 E-value=2.5e+02 Score=29.58 Aligned_cols=18 Identities=22% Similarity=0.187 Sum_probs=13.7
Q ss_pred EEEeecCCC------CCccccCCC
Q 040013 480 CIANFYSAT------GKLGLHQDK 497 (586)
Q Consensus 480 cLVNfY~pG------d~MGwH~Dd 497 (586)
.-+|+|++- -+++.|.|-
T Consensus 155 lrl~~YP~~~~~~~~~G~~~HtD~ 178 (303)
T PLN02403 155 TKVAKYPECPRPELVRGLREHTDA 178 (303)
T ss_pred eeeEcCCCCCCcccccCccCccCC
Confidence 569999763 257899997
No 55
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase
Probab=20.84 E-value=4.4e+02 Score=27.90 Aligned_cols=58 Identities=14% Similarity=-0.024 Sum_probs=33.8
Q ss_pred EEEEeecCCC------CCccccCCCccccccccCC-CCEEEEecCCceEEEeecccCCCccEEEEcCCCcEEEEcCCc
Q 040013 479 ICIANFYSAT------GKLGLHQDKDESQESIDKC-LPVVSFSIGDSAEFLYGDLRDVANAKKVILESGDVLIFGGKS 549 (586)
Q Consensus 479 acLVNfY~pG------d~MGwH~Dd~Ese~sL~~~-~PIVSLSLGaSriFlFg~~~r~e~~~sV~LeSGDLLIM~GeS 549 (586)
..-+|+|++- -+++.|.|-.-- .|-+. ..+- | .++. +++....|...+|.+||.-|++
T Consensus 159 ~lRl~~YPp~~~~~~~~G~~~HTD~g~l--TlL~qd~~v~----G----LQV~---~~g~Wi~V~p~pg~lvVNiGD~ 223 (321)
T PLN02299 159 GTKVSNYPPCPKPDLVKGLRAHTDAGGI--ILLFQDDKVS----G----LQLL---KDGEWVDVPPMRHSIVVNLGDQ 223 (321)
T ss_pred eeeeEecCCCCCcccccCccCccCCCeE--EEEEecCCCC----C----cCcc---cCCeEEECCCCCCeEEEEeCHH
Confidence 4678999862 267799997211 01111 0111 1 2222 1345788888899999998876
Done!