Query 040015
Match_columns 1399
No_of_seqs 814 out of 5274
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 04:15:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040015.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040015hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 4.3E-86 9.3E-91 817.0 43.9 639 26-690 19-675 (889)
2 PLN03210 Resistant to P. syrin 100.0 2.6E-63 5.7E-68 655.3 56.1 459 170-667 182-667 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 3E-42 6.6E-47 391.4 14.7 279 177-463 1-285 (287)
4 PLN00113 leucine-rich repeat r 100.0 3.8E-35 8.1E-40 391.3 29.7 302 1035-1386 304-607 (968)
5 PLN00113 leucine-rich repeat r 100.0 5.4E-35 1.2E-39 389.8 27.1 129 550-687 88-219 (968)
6 KOG0472 Leucine-rich repeat pr 99.9 1.6E-29 3.4E-34 265.4 -14.4 281 1052-1360 240-539 (565)
7 PLN03210 Resistant to P. syrin 99.9 9.3E-24 2E-28 280.1 23.0 342 1012-1391 553-911 (1153)
8 KOG0618 Serine/threonine phosp 99.9 4.2E-26 9.2E-31 264.9 -3.9 261 1040-1334 242-509 (1081)
9 KOG4194 Membrane glycoprotein 99.9 7.1E-24 1.5E-28 233.1 7.2 86 588-674 79-166 (873)
10 KOG4194 Membrane glycoprotein 99.9 6.7E-24 1.5E-28 233.2 6.8 347 997-1395 78-437 (873)
11 KOG0618 Serine/threonine phosp 99.9 9.5E-25 2.1E-29 253.8 -5.2 109 576-686 11-120 (1081)
12 KOG0472 Leucine-rich repeat pr 99.9 1.8E-25 3.8E-30 235.1 -10.6 104 583-687 64-167 (565)
13 KOG0444 Cytoskeletal regulator 99.8 6.2E-23 1.3E-27 226.5 -6.7 65 1226-1292 313-377 (1255)
14 KOG0444 Cytoskeletal regulator 99.8 2.8E-21 6E-26 213.6 -5.4 332 1037-1391 30-380 (1255)
15 KOG4237 Extracellular matrix p 99.6 1.9E-17 4E-22 175.3 -4.2 112 576-687 80-195 (498)
16 PRK15387 E3 ubiquitin-protein 99.6 1.5E-14 3.3E-19 176.8 15.8 259 1041-1365 203-461 (788)
17 PRK15387 E3 ubiquitin-protein 99.5 3.1E-14 6.7E-19 174.1 14.5 234 1091-1384 223-456 (788)
18 PRK15370 E3 ubiquitin-protein 99.4 1.6E-12 3.5E-17 160.6 11.9 244 1065-1360 179-426 (754)
19 KOG0617 Ras suppressor protein 99.4 2.7E-14 5.8E-19 133.5 -3.7 100 585-685 31-132 (264)
20 PRK04841 transcriptional regul 99.3 5E-11 1.1E-15 159.2 25.2 292 173-510 15-332 (903)
21 PRK15370 E3 ubiquitin-protein 99.3 3.2E-12 6.8E-17 158.1 11.3 247 1039-1337 178-427 (754)
22 PRK00411 cdc6 cell division co 99.3 2.1E-10 4.5E-15 136.5 26.0 302 170-489 28-358 (394)
23 KOG4237 Extracellular matrix p 99.3 8.3E-14 1.8E-18 148.0 -3.1 137 987-1126 56-200 (498)
24 TIGR02928 orc1/cdc6 family rep 99.2 1.7E-09 3.7E-14 127.3 27.0 301 172-489 15-350 (365)
25 KOG4658 Apoptotic ATPase [Sign 99.2 5.2E-12 1.1E-16 158.6 4.9 101 587-688 545-650 (889)
26 KOG0617 Ras suppressor protein 99.2 2.7E-13 5.9E-18 126.8 -4.8 126 553-687 31-157 (264)
27 TIGR03015 pepcterm_ATPase puta 99.1 5.3E-09 1.1E-13 117.4 21.2 184 200-387 43-242 (269)
28 PF01637 Arch_ATPase: Archaeal 99.0 7.4E-10 1.6E-14 122.0 10.9 196 174-382 1-233 (234)
29 PRK00080 ruvB Holliday junctio 99.0 4.4E-09 9.5E-14 120.6 15.2 278 172-490 25-311 (328)
30 TIGR00635 ruvB Holliday juncti 99.0 6.4E-09 1.4E-13 118.9 15.8 278 172-490 4-290 (305)
31 KOG4341 F-box protein containi 99.0 3.7E-11 8.1E-16 129.5 -2.5 262 1038-1340 163-441 (483)
32 KOG4341 F-box protein containi 98.9 4.3E-11 9.2E-16 129.1 -3.8 302 1041-1382 140-461 (483)
33 cd00116 LRR_RI Leucine-rich re 98.9 3.3E-10 7.1E-15 131.5 0.9 141 1225-1384 161-318 (319)
34 COG2909 MalT ATP-dependent tra 98.9 2E-07 4.4E-12 110.9 22.4 291 181-511 24-339 (894)
35 PTZ00112 origin recognition co 98.9 2E-07 4.3E-12 111.5 22.1 301 171-488 754-1085(1164)
36 PF05729 NACHT: NACHT domain 98.8 1.1E-08 2.4E-13 105.5 9.2 142 201-349 1-162 (166)
37 COG3899 Predicted ATPase [Gene 98.8 1.6E-07 3.5E-12 119.4 19.1 310 173-508 1-384 (849)
38 PF14580 LRR_9: Leucine-rich r 98.8 6.6E-09 1.4E-13 104.2 5.1 131 551-692 15-152 (175)
39 PRK15386 type III secretion pr 98.6 1.3E-07 2.9E-12 106.2 11.5 54 1253-1310 156-210 (426)
40 cd00116 LRR_RI Leucine-rich re 98.6 4.9E-09 1.1E-13 121.6 -0.0 88 583-670 19-121 (319)
41 COG2256 MGS1 ATPase related to 98.6 1.4E-06 3E-11 95.2 17.5 174 170-381 28-210 (436)
42 PRK06893 DNA replication initi 98.6 4.1E-07 8.8E-12 98.1 12.5 156 200-387 39-207 (229)
43 PRK13342 recombination factor 98.6 1.3E-06 2.8E-11 103.4 17.1 178 172-385 12-198 (413)
44 PF14580 LRR_9: Leucine-rich r 98.5 5.4E-08 1.2E-12 97.8 4.1 102 583-687 15-120 (175)
45 KOG0532 Leucine-rich repeat (L 98.5 3.9E-09 8.5E-14 118.3 -4.5 108 577-687 89-196 (722)
46 PRK15386 type III secretion pr 98.5 3.8E-07 8.2E-12 102.6 10.0 157 1191-1385 52-212 (426)
47 COG4886 Leucine-rich repeat (L 98.5 9.3E-08 2E-12 114.1 5.2 103 584-687 113-216 (394)
48 COG3903 Predicted ATPase [Gene 98.5 3.2E-07 6.8E-12 101.1 8.1 292 199-511 13-315 (414)
49 KOG1259 Nischarin, modulator o 98.5 2.5E-08 5.5E-13 102.6 -0.9 124 553-688 282-407 (490)
50 TIGR03420 DnaA_homol_Hda DnaA 98.4 2.5E-06 5.5E-11 92.8 13.4 171 177-386 22-204 (226)
51 TIGR02903 spore_lon_C ATP-depe 98.4 1.7E-05 3.7E-10 97.8 21.2 204 172-386 154-398 (615)
52 PF13855 LRR_8: Leucine rich r 98.4 3.4E-07 7.3E-12 75.3 4.3 57 587-643 1-59 (61)
53 PF13401 AAA_22: AAA domain; P 98.4 6.4E-07 1.4E-11 87.9 7.1 118 199-319 3-125 (131)
54 KOG3207 Beta-tubulin folding c 98.3 8.5E-08 1.8E-12 104.7 -0.3 89 1061-1150 169-259 (505)
55 KOG1259 Nischarin, modulator o 98.3 7.9E-08 1.7E-12 99.0 -0.9 102 584-688 281-382 (490)
56 PRK05564 DNA polymerase III su 98.3 1E-05 2.2E-10 92.2 15.8 179 172-382 4-189 (313)
57 COG1474 CDC6 Cdc6-related prot 98.3 2.6E-05 5.6E-10 89.2 18.8 206 174-383 19-238 (366)
58 KOG3207 Beta-tubulin folding c 98.3 2.2E-07 4.9E-12 101.5 1.8 205 1165-1383 118-336 (505)
59 PF13191 AAA_16: AAA ATPase do 98.3 4.3E-07 9.3E-12 95.6 3.8 48 173-224 1-48 (185)
60 PRK07003 DNA polymerase III su 98.3 3.3E-05 7.2E-10 93.0 19.1 196 172-385 16-223 (830)
61 PF13173 AAA_14: AAA domain 98.3 2E-06 4.4E-11 83.4 7.6 120 200-342 2-127 (128)
62 PRK14961 DNA polymerase III su 98.3 1.9E-05 4E-10 91.8 16.9 194 172-382 16-219 (363)
63 PRK12402 replication factor C 98.3 9.9E-06 2.1E-10 94.5 14.7 197 172-382 15-225 (337)
64 cd00009 AAA The AAA+ (ATPases 98.3 4.4E-06 9.6E-11 84.3 10.2 125 175-321 1-131 (151)
65 cd01128 rho_factor Transcripti 98.3 1.4E-06 3E-11 93.7 6.6 91 199-290 15-113 (249)
66 PF13855 LRR_8: Leucine rich r 98.3 8E-07 1.7E-11 73.0 3.7 59 610-669 1-61 (61)
67 PRK04195 replication factor C 98.2 8.5E-05 1.8E-09 90.0 22.6 247 172-462 14-271 (482)
68 PLN03150 hypothetical protein; 98.2 1.3E-06 2.9E-11 108.7 7.0 91 588-678 419-512 (623)
69 KOG0532 Leucine-rich repeat (L 98.2 1.6E-07 3.4E-12 105.9 -1.4 108 576-687 134-241 (722)
70 PRK14963 DNA polymerase III su 98.2 4.4E-06 9.5E-11 99.8 10.6 198 172-380 14-214 (504)
71 PTZ00202 tuzin; Provisional 98.2 1.6E-05 3.5E-10 88.6 13.8 168 169-349 259-433 (550)
72 PLN03025 replication factor C 98.2 1.3E-05 2.9E-10 91.5 13.8 183 172-381 13-198 (319)
73 KOG2028 ATPase related to the 98.2 1.7E-05 3.8E-10 84.5 13.1 158 199-379 161-332 (554)
74 PRK14960 DNA polymerase III su 98.2 2.8E-05 6.1E-10 92.6 16.0 195 172-383 15-219 (702)
75 PF05496 RuvB_N: Holliday junc 98.2 1.2E-05 2.5E-10 82.5 11.0 182 172-388 24-226 (233)
76 PRK14949 DNA polymerase III su 98.1 3.4E-05 7.4E-10 94.9 16.0 195 172-383 16-220 (944)
77 COG4886 Leucine-rich repeat (L 98.1 1.6E-06 3.5E-11 103.4 4.7 124 553-686 114-238 (394)
78 PRK00440 rfc replication facto 98.1 4.2E-05 9E-10 88.5 16.2 181 172-381 17-201 (319)
79 PRK12323 DNA polymerase III su 98.1 3.4E-05 7.4E-10 91.6 14.8 199 172-383 16-225 (700)
80 PRK14957 DNA polymerase III su 98.1 5.5E-05 1.2E-09 90.5 16.7 185 172-385 16-223 (546)
81 PRK06645 DNA polymerase III su 98.1 2.4E-05 5.1E-10 93.0 13.4 196 172-381 21-227 (507)
82 PRK14956 DNA polymerase III su 98.1 1.3E-05 2.8E-10 92.9 10.9 193 172-381 18-220 (484)
83 PRK08727 hypothetical protein; 98.1 3.9E-05 8.4E-10 83.0 14.0 148 201-380 42-201 (233)
84 KOG2227 Pre-initiation complex 98.1 5.1E-05 1.1E-09 84.6 14.8 214 170-387 148-376 (529)
85 PLN03150 hypothetical protein; 98.1 5.6E-06 1.2E-10 103.1 8.0 104 557-668 420-526 (623)
86 KOG2120 SCF ubiquitin ligase, 98.1 8.8E-08 1.9E-12 98.9 -6.7 178 1191-1383 185-373 (419)
87 KOG2120 SCF ubiquitin ligase, 98.1 3E-07 6.5E-12 95.1 -3.0 107 1040-1148 186-297 (419)
88 PRK13341 recombination factor 98.1 2.5E-05 5.5E-10 97.0 13.1 173 172-379 28-213 (725)
89 PRK14962 DNA polymerase III su 98.1 6.6E-05 1.4E-09 89.1 15.8 187 172-387 14-223 (472)
90 PRK09376 rho transcription ter 98.0 7E-06 1.5E-10 91.4 7.0 101 183-290 158-266 (416)
91 PRK05896 DNA polymerase III su 98.0 3.6E-05 7.9E-10 91.8 13.4 196 172-384 16-222 (605)
92 PRK08691 DNA polymerase III su 98.0 5.4E-05 1.2E-09 91.3 14.8 194 172-383 16-220 (709)
93 TIGR02397 dnaX_nterm DNA polym 98.0 9.1E-05 2E-09 87.0 16.5 183 172-384 14-219 (355)
94 PRK08084 DNA replication initi 98.0 0.00011 2.3E-09 79.7 15.2 156 200-387 45-213 (235)
95 PRK07994 DNA polymerase III su 98.0 8.8E-05 1.9E-09 90.1 15.7 196 172-384 16-221 (647)
96 PRK08903 DnaA regulatory inact 98.0 6.6E-05 1.4E-09 81.5 13.5 152 200-387 42-203 (227)
97 PRK14964 DNA polymerase III su 98.0 0.0001 2.2E-09 86.8 15.7 181 172-381 13-215 (491)
98 PF12799 LRR_4: Leucine Rich r 98.0 6.2E-06 1.3E-10 61.5 3.5 39 588-626 2-40 (44)
99 PRK09112 DNA polymerase III su 98.0 0.00011 2.4E-09 83.8 15.2 198 171-384 22-241 (351)
100 PRK05642 DNA replication initi 98.0 9.8E-05 2.1E-09 79.8 13.6 156 200-387 45-212 (234)
101 PRK09087 hypothetical protein; 98.0 0.00014 3E-09 77.8 14.6 142 200-384 44-196 (226)
102 PRK14955 DNA polymerase III su 97.9 9.6E-05 2.1E-09 86.9 14.5 201 172-382 16-227 (397)
103 COG2255 RuvB Holliday junction 97.9 0.00023 4.9E-09 74.4 14.8 181 172-387 26-227 (332)
104 TIGR00678 holB DNA polymerase 97.9 0.00014 3E-09 76.2 13.8 91 279-379 95-187 (188)
105 PRK07940 DNA polymerase III su 97.9 0.00014 3.1E-09 84.0 15.0 195 172-383 5-213 (394)
106 PRK14951 DNA polymerase III su 97.9 0.00015 3.2E-09 88.1 15.6 198 172-383 16-225 (618)
107 PRK07471 DNA polymerase III su 97.9 3.1E-05 6.8E-10 88.7 9.3 193 171-383 18-238 (365)
108 TIGR01242 26Sp45 26S proteasom 97.9 5.3E-05 1.2E-09 88.4 11.0 182 170-377 120-328 (364)
109 PRK14958 DNA polymerase III su 97.9 0.00016 3.5E-09 86.8 14.6 179 172-382 16-219 (509)
110 TIGR00767 rho transcription te 97.9 2.6E-05 5.6E-10 87.6 7.0 91 199-290 167-265 (415)
111 KOG0531 Protein phosphatase 1, 97.8 3.5E-06 7.6E-11 100.4 -0.0 101 583-686 91-192 (414)
112 PF12799 LRR_4: Leucine Rich r 97.8 1.8E-05 4E-10 59.0 3.7 39 610-649 1-39 (44)
113 PRK14969 DNA polymerase III su 97.8 0.00033 7.2E-09 84.8 16.4 180 172-383 16-221 (527)
114 KOG0531 Protein phosphatase 1, 97.8 3.2E-06 6.9E-11 100.8 -0.9 100 585-687 70-169 (414)
115 PRK14959 DNA polymerase III su 97.8 0.00043 9.2E-09 83.4 16.7 199 172-387 16-225 (624)
116 PF00308 Bac_DnaA: Bacterial d 97.8 0.00018 4E-09 76.6 12.2 184 173-383 10-208 (219)
117 PRK09111 DNA polymerase III su 97.8 0.00037 7.9E-09 85.0 16.1 199 172-384 24-234 (598)
118 PRK11331 5-methylcytosine-spec 97.8 0.00013 2.8E-09 83.7 11.4 120 172-304 175-297 (459)
119 PF14516 AAA_35: AAA-like doma 97.8 0.0022 4.8E-08 73.4 21.5 201 172-390 11-246 (331)
120 PF05673 DUF815: Protein of un 97.8 0.00055 1.2E-08 71.5 14.6 126 168-322 23-153 (249)
121 PRK14087 dnaA chromosomal repl 97.8 0.00037 8E-09 82.8 15.2 169 200-385 141-321 (450)
122 PRK07133 DNA polymerase III su 97.8 0.00062 1.3E-08 83.4 17.2 193 172-383 18-219 (725)
123 PRK14954 DNA polymerase III su 97.7 0.00077 1.7E-08 82.4 17.4 202 172-383 16-229 (620)
124 PRK14950 DNA polymerase III su 97.7 0.00031 6.7E-09 86.8 14.3 197 172-384 16-222 (585)
125 PF05621 TniB: Bacterial TniB 97.7 0.00095 2.1E-08 72.2 16.0 197 179-381 44-259 (302)
126 PRK14970 DNA polymerase III su 97.7 0.00073 1.6E-08 79.4 16.5 178 172-380 17-206 (367)
127 CHL00181 cbbX CbbX; Provisiona 97.7 0.00092 2E-08 74.4 16.1 136 200-352 59-211 (287)
128 PRK14952 DNA polymerase III su 97.7 0.00085 1.9E-08 81.3 17.0 199 172-387 13-224 (584)
129 PRK06305 DNA polymerase III su 97.7 0.00076 1.7E-08 80.1 16.3 182 172-383 17-223 (451)
130 TIGR03345 VI_ClpV1 type VI sec 97.7 0.00026 5.6E-09 90.7 13.0 183 172-377 187-390 (852)
131 PRK14971 DNA polymerase III su 97.7 0.00075 1.6E-08 83.1 16.4 178 172-382 17-221 (614)
132 TIGR02639 ClpA ATP-dependent C 97.7 0.00027 5.9E-09 90.1 12.9 157 172-350 182-358 (731)
133 PRK08451 DNA polymerase III su 97.6 0.0012 2.5E-08 78.9 16.2 194 172-384 14-219 (535)
134 TIGR02880 cbbX_cfxQ probable R 97.6 0.00084 1.8E-08 74.8 14.0 133 202-351 60-209 (284)
135 PHA02544 44 clamp loader, smal 97.6 0.00048 1E-08 79.2 12.3 146 172-347 21-170 (316)
136 KOG4579 Leucine-rich repeat (L 97.6 4.7E-06 1E-10 76.4 -3.4 90 584-674 50-140 (177)
137 PRK14953 DNA polymerase III su 97.6 0.002 4.3E-08 77.1 17.4 184 172-384 16-221 (486)
138 PRK03992 proteasome-activating 97.6 0.00044 9.5E-09 80.9 11.7 181 171-377 130-337 (389)
139 PRK06620 hypothetical protein; 97.5 0.0014 3E-08 69.5 14.1 136 201-381 45-187 (214)
140 PRK07764 DNA polymerase III su 97.5 0.0015 3.2E-08 82.6 16.6 192 172-381 15-219 (824)
141 TIGR02881 spore_V_K stage V sp 97.5 0.00083 1.8E-08 74.4 12.9 162 173-351 7-192 (261)
142 PRK14948 DNA polymerase III su 97.5 0.0018 3.8E-08 79.8 16.8 198 172-384 16-223 (620)
143 KOG2543 Origin recognition com 97.5 0.00052 1.1E-08 74.8 10.5 169 171-348 5-191 (438)
144 KOG0989 Replication factor C, 97.5 0.00067 1.4E-08 71.9 10.9 189 171-382 35-229 (346)
145 TIGR00362 DnaA chromosomal rep 97.5 0.0024 5.1E-08 76.0 17.3 159 200-381 136-308 (405)
146 CHL00095 clpC Clp protease ATP 97.5 0.00063 1.4E-08 87.8 13.0 156 172-349 179-353 (821)
147 KOG4579 Leucine-rich repeat (L 97.4 2E-05 4.2E-10 72.4 -1.3 98 588-686 28-129 (177)
148 PRK14086 dnaA chromosomal repl 97.4 0.0042 9.1E-08 74.7 17.6 157 201-380 315-485 (617)
149 PRK06647 DNA polymerase III su 97.4 0.0032 6.9E-08 76.7 16.8 195 172-383 16-220 (563)
150 KOG3665 ZYG-1-like serine/thre 97.4 0.00012 2.7E-09 90.6 4.3 113 654-776 170-284 (699)
151 KOG1909 Ran GTPase-activating 97.4 3.8E-05 8.2E-10 82.3 -0.4 92 1034-1125 25-131 (382)
152 KOG1947 Leucine rich repeat pr 97.3 3.5E-05 7.6E-10 95.4 -1.1 37 1302-1338 403-440 (482)
153 KOG1909 Ran GTPase-activating 97.3 3.5E-05 7.5E-10 82.6 -1.0 87 584-670 27-133 (382)
154 PRK05563 DNA polymerase III su 97.3 0.0042 9.1E-08 76.0 16.6 193 172-381 16-218 (559)
155 PRK07399 DNA polymerase III su 97.3 0.0043 9.2E-08 70.0 15.3 196 172-383 4-221 (314)
156 PRK00149 dnaA chromosomal repl 97.3 0.0044 9.6E-08 74.6 16.6 159 200-381 148-320 (450)
157 PF00004 AAA: ATPase family as 97.3 0.00049 1.1E-08 67.5 7.0 69 203-292 1-70 (132)
158 KOG3665 ZYG-1-like serine/thre 97.3 0.00015 3.3E-09 89.9 3.8 111 552-670 145-263 (699)
159 TIGR03346 chaperone_ClpB ATP-d 97.3 0.0019 4.2E-08 83.7 14.0 158 172-350 173-349 (852)
160 PRK10787 DNA-binding ATP-depen 97.3 0.0062 1.3E-07 77.3 17.8 166 171-350 321-506 (784)
161 PRK14088 dnaA chromosomal repl 97.3 0.0041 8.9E-08 74.0 15.4 160 200-381 130-303 (440)
162 PRK11034 clpA ATP-dependent Cl 97.3 0.0016 3.5E-08 81.7 12.4 158 172-350 186-362 (758)
163 KOG1947 Leucine rich repeat pr 97.3 4.4E-05 9.6E-10 94.4 -1.4 67 1062-1128 186-257 (482)
164 KOG1859 Leucine-rich repeat pr 97.3 1.3E-05 2.7E-10 93.2 -5.6 84 583-669 205-291 (1096)
165 PRK12422 chromosomal replicati 97.3 0.0042 9.2E-08 73.5 15.1 155 200-377 141-307 (445)
166 PRK14965 DNA polymerase III su 97.2 0.0042 9.2E-08 76.4 15.2 196 172-384 16-222 (576)
167 COG3267 ExeA Type II secretory 97.2 0.012 2.5E-07 61.4 15.5 182 200-386 51-248 (269)
168 KOG1859 Leucine-rich repeat pr 97.2 1.5E-05 3.2E-10 92.7 -6.0 84 583-670 183-267 (1096)
169 PTZ00361 26 proteosome regulat 97.2 0.0022 4.7E-08 75.1 11.3 159 172-351 183-368 (438)
170 PRK10865 protein disaggregatio 97.1 0.0033 7.1E-08 81.1 13.4 45 172-223 178-222 (857)
171 KOG0991 Replication factor C, 97.1 0.0034 7.4E-08 63.4 10.3 44 172-222 27-70 (333)
172 COG0542 clpA ATP-binding subun 97.1 0.012 2.5E-07 72.5 17.0 124 172-307 491-620 (786)
173 PRK05707 DNA polymerase III su 97.1 0.0064 1.4E-07 69.0 14.1 97 279-383 105-203 (328)
174 smart00382 AAA ATPases associa 97.1 0.002 4.4E-08 64.2 9.1 88 201-293 3-91 (148)
175 COG0593 DnaA ATPase involved i 97.1 0.0063 1.4E-07 69.5 13.4 137 199-353 112-260 (408)
176 PRK08116 hypothetical protein; 97.0 0.0016 3.4E-08 71.8 8.1 104 201-320 115-221 (268)
177 KOG2004 Mitochondrial ATP-depe 97.0 0.0095 2.1E-07 70.4 14.2 107 171-291 410-516 (906)
178 TIGR00602 rad24 checkpoint pro 97.0 0.0031 6.7E-08 77.0 10.7 51 171-223 83-133 (637)
179 PTZ00454 26S protease regulato 97.0 0.0073 1.6E-07 70.3 13.1 181 171-377 144-351 (398)
180 COG0466 Lon ATP-dependent Lon 97.0 0.017 3.6E-07 68.9 15.8 166 171-350 322-508 (782)
181 PF10443 RNA12: RNA12 protein; 96.9 0.12 2.6E-06 58.9 21.8 279 177-491 1-371 (431)
182 KOG1644 U2-associated snRNP A' 96.9 0.001 2.2E-08 66.0 4.9 98 588-687 43-147 (233)
183 PRK10536 hypothetical protein; 96.9 0.0073 1.6E-07 64.2 11.4 55 172-235 55-109 (262)
184 TIGR03689 pup_AAA proteasome A 96.9 0.011 2.4E-07 70.2 14.0 168 172-350 182-378 (512)
185 KOG0741 AAA+-type ATPase [Post 96.9 0.019 4.2E-07 65.3 14.6 149 197-373 535-704 (744)
186 KOG1514 Origin recognition com 96.9 0.014 3.1E-07 69.1 14.2 206 172-386 396-624 (767)
187 TIGR02640 gas_vesic_GvpN gas v 96.9 0.03 6.4E-07 61.9 16.3 56 179-248 9-64 (262)
188 PRK08769 DNA polymerase III su 96.8 0.017 3.6E-07 64.9 14.1 96 279-384 112-209 (319)
189 PF04665 Pox_A32: Poxvirus A32 96.8 0.0019 4E-08 68.4 6.2 35 202-238 15-49 (241)
190 PRK10865 protein disaggregatio 96.8 0.015 3.2E-07 75.2 15.4 139 172-319 568-720 (857)
191 PRK08118 topology modulation p 96.8 0.00061 1.3E-08 69.2 2.3 34 202-235 3-37 (167)
192 COG1373 Predicted ATPase (AAA+ 96.8 0.0087 1.9E-07 70.1 12.0 119 202-346 39-163 (398)
193 PRK08058 DNA polymerase III su 96.8 0.012 2.6E-07 67.3 12.6 163 173-348 6-180 (329)
194 KOG2982 Uncharacterized conser 96.8 0.00024 5.2E-09 74.2 -1.1 37 586-622 70-109 (418)
195 CHL00176 ftsH cell division pr 96.8 0.01 2.3E-07 73.2 12.7 178 172-375 183-386 (638)
196 TIGR00763 lon ATP-dependent pr 96.8 0.014 3.1E-07 75.0 14.5 52 171-223 319-370 (775)
197 KOG1644 U2-associated snRNP A' 96.7 0.0017 3.7E-08 64.5 4.3 85 582-667 59-150 (233)
198 PF02562 PhoH: PhoH-like prote 96.7 0.0044 9.5E-08 64.1 7.4 132 176-321 4-157 (205)
199 TIGR01241 FtsH_fam ATP-depende 96.6 0.028 6E-07 68.7 15.3 209 171-405 54-297 (495)
200 TIGR02639 ClpA ATP-dependent C 96.6 0.0049 1.1E-07 78.7 9.2 122 172-306 454-579 (731)
201 PRK12608 transcription termina 96.6 0.012 2.5E-07 66.4 10.6 103 180-289 119-229 (380)
202 PF13177 DNA_pol3_delta2: DNA 96.6 0.021 4.5E-07 57.7 11.6 139 176-338 1-162 (162)
203 PRK08181 transposase; Validate 96.6 0.0081 1.8E-07 65.7 9.2 101 201-320 107-209 (269)
204 KOG2982 Uncharacterized conser 96.6 0.003 6.5E-08 66.3 5.3 63 1225-1287 93-156 (418)
205 PRK08939 primosomal protein Dn 96.6 0.0069 1.5E-07 67.9 8.6 122 176-319 135-260 (306)
206 PRK07952 DNA replication prote 96.5 0.0078 1.7E-07 64.7 8.5 103 200-319 99-204 (244)
207 TIGR03345 VI_ClpV1 type VI sec 96.5 0.0056 1.2E-07 78.7 8.7 138 172-319 566-718 (852)
208 TIGR03346 chaperone_ClpB ATP-d 96.5 0.01 2.2E-07 77.2 11.0 125 172-306 565-693 (852)
209 COG2607 Predicted ATPase (AAA+ 96.5 0.012 2.6E-07 60.3 9.0 122 169-319 57-182 (287)
210 KOG2739 Leucine-rich acidic nu 96.5 0.0016 3.4E-08 67.9 2.7 107 583-691 39-154 (260)
211 PRK12377 putative replication 96.5 0.0049 1.1E-07 66.5 6.4 102 200-319 101-205 (248)
212 PRK06871 DNA polymerase III su 96.5 0.065 1.4E-06 60.3 15.4 178 180-380 10-200 (325)
213 CHL00095 clpC Clp protease ATP 96.4 0.0097 2.1E-07 77.1 10.1 138 172-319 509-661 (821)
214 PRK06090 DNA polymerase III su 96.4 0.061 1.3E-06 60.3 15.1 93 279-383 107-201 (319)
215 PRK09361 radB DNA repair and r 96.4 0.011 2.3E-07 64.1 8.8 47 198-247 21-67 (225)
216 PRK06526 transposase; Provisio 96.3 0.005 1.1E-07 67.0 5.7 100 201-320 99-201 (254)
217 PRK07261 topology modulation p 96.3 0.0087 1.9E-07 61.2 7.0 65 202-290 2-67 (171)
218 smart00763 AAA_PrkA PrkA AAA d 96.3 0.004 8.7E-08 69.8 4.6 51 172-223 51-101 (361)
219 cd01123 Rad51_DMC1_radA Rad51_ 96.2 0.014 3E-07 63.9 8.6 57 198-255 17-77 (235)
220 COG5238 RNA1 Ran GTPase-activa 96.2 0.0032 6.8E-08 65.3 3.1 88 585-672 28-135 (388)
221 PF00158 Sigma54_activat: Sigm 96.2 0.016 3.4E-07 58.8 8.1 131 174-319 1-143 (168)
222 PRK06921 hypothetical protein; 96.2 0.012 2.6E-07 64.7 7.9 99 200-319 117-224 (266)
223 PRK09183 transposase/IS protei 96.2 0.009 1.9E-07 65.6 6.8 100 201-319 103-205 (259)
224 PF01695 IstB_IS21: IstB-like 96.1 0.0058 1.3E-07 62.7 4.4 100 200-319 47-149 (178)
225 PF07693 KAP_NTPase: KAP famil 96.1 0.15 3.2E-06 59.0 16.6 44 177-224 1-44 (325)
226 COG1222 RPT1 ATP-dependent 26S 96.1 0.076 1.7E-06 58.2 12.7 188 173-388 152-372 (406)
227 PRK04296 thymidine kinase; Pro 96.1 0.0091 2E-07 62.3 5.8 114 201-321 3-117 (190)
228 COG0542 clpA ATP-binding subun 96.0 0.011 2.4E-07 72.6 7.1 157 172-350 170-346 (786)
229 TIGR02237 recomb_radB DNA repa 96.0 0.016 3.4E-07 62.0 7.4 49 198-249 10-58 (209)
230 KOG1969 DNA replication checkp 96.0 0.017 3.6E-07 68.7 7.9 79 196-293 322-400 (877)
231 PRK11034 clpA ATP-dependent Cl 96.0 0.016 3.4E-07 73.1 8.3 119 173-305 459-582 (758)
232 KOG2035 Replication factor C, 96.0 0.23 5E-06 52.3 15.1 227 174-425 15-282 (351)
233 PRK07993 DNA polymerase III su 95.9 0.15 3.2E-06 58.2 15.0 179 180-381 10-202 (334)
234 PRK05541 adenylylsulfate kinas 95.9 0.018 4E-07 59.5 7.2 36 199-236 6-41 (176)
235 COG0470 HolB ATPase involved i 95.9 0.036 7.7E-07 64.3 10.4 142 173-336 2-167 (325)
236 PF07728 AAA_5: AAA domain (dy 95.9 0.0044 9.5E-08 61.3 2.3 88 203-304 2-89 (139)
237 PRK04132 replication factor C 95.9 0.093 2E-06 66.3 14.2 156 208-384 574-732 (846)
238 PF00560 LRR_1: Leucine Rich R 95.8 0.0042 9.1E-08 38.4 1.1 19 612-630 2-20 (22)
239 cd01393 recA_like RecA is a b 95.8 0.041 8.8E-07 59.7 9.6 92 198-290 17-124 (226)
240 KOG2228 Origin recognition com 95.8 0.055 1.2E-06 58.6 9.9 171 173-350 25-219 (408)
241 COG2812 DnaX DNA polymerase II 95.8 0.033 7.2E-07 65.8 9.2 191 172-379 16-216 (515)
242 PRK06835 DNA replication prote 95.8 0.0085 1.8E-07 67.7 4.1 102 201-319 184-288 (329)
243 TIGR02902 spore_lonB ATP-depen 95.8 0.023 5E-07 69.4 8.2 43 173-222 66-108 (531)
244 PRK06964 DNA polymerase III su 95.7 0.21 4.6E-06 56.7 15.1 93 279-383 131-225 (342)
245 PHA00729 NTP-binding motif con 95.7 0.039 8.5E-07 57.9 8.5 24 200-223 17-40 (226)
246 PF13207 AAA_17: AAA domain; P 95.7 0.0068 1.5E-07 58.2 2.7 21 202-222 1-21 (121)
247 PF00448 SRP54: SRP54-type pro 95.7 0.035 7.6E-07 57.9 8.1 88 201-290 2-93 (196)
248 PF08423 Rad51: Rad51; InterP 95.7 0.027 6E-07 61.6 7.6 57 199-256 37-97 (256)
249 TIGR01243 CDC48 AAA family ATP 95.7 0.16 3.4E-06 65.4 15.6 180 172-377 453-657 (733)
250 cd01120 RecA-like_NTPases RecA 95.6 0.031 6.7E-07 57.1 7.6 40 202-243 1-40 (165)
251 KOG2739 Leucine-rich acidic nu 95.6 0.006 1.3E-07 63.7 2.2 87 602-690 35-126 (260)
252 cd01131 PilT Pilus retraction 95.6 0.016 3.5E-07 60.9 5.3 113 201-325 2-114 (198)
253 PRK06696 uridine kinase; Valid 95.6 0.025 5.3E-07 61.0 6.7 44 176-223 2-45 (223)
254 cd01394 radB RadB. The archaea 95.6 0.048 1E-06 58.8 8.9 44 198-243 17-60 (218)
255 COG1223 Predicted ATPase (AAA+ 95.5 0.085 1.8E-06 54.7 9.7 157 172-350 121-297 (368)
256 cd01133 F1-ATPase_beta F1 ATP 95.5 0.052 1.1E-06 58.9 8.8 88 200-289 69-172 (274)
257 KOG2123 Uncharacterized conser 95.5 0.0014 2.9E-08 68.1 -3.1 81 582-663 36-123 (388)
258 PF13604 AAA_30: AAA domain; P 95.5 0.03 6.5E-07 58.7 6.8 108 201-321 19-132 (196)
259 KOG0731 AAA+-type ATPase conta 95.5 0.15 3.2E-06 62.7 13.2 184 172-380 311-521 (774)
260 TIGR01243 CDC48 AAA family ATP 95.5 0.07 1.5E-06 68.7 11.4 182 172-379 178-383 (733)
261 PF14532 Sigma54_activ_2: Sigm 95.4 0.01 2.2E-07 58.5 2.9 108 175-320 1-110 (138)
262 KOG1051 Chaperone HSP104 and r 95.4 0.068 1.5E-06 67.0 10.4 122 173-306 563-686 (898)
263 PF00560 LRR_1: Leucine Rich R 95.4 0.0065 1.4E-07 37.6 0.9 22 588-609 1-22 (22)
264 PRK11889 flhF flagellar biosyn 95.4 0.066 1.4E-06 60.6 9.3 90 199-291 240-331 (436)
265 PF13306 LRR_5: Leucine rich r 95.4 0.04 8.6E-07 53.6 6.9 102 551-666 8-112 (129)
266 cd03238 ABC_UvrA The excision 95.4 0.1 2.2E-06 53.4 9.9 123 200-334 21-161 (176)
267 COG1875 NYN ribonuclease and A 95.4 0.039 8.5E-07 60.4 7.1 134 174-320 226-388 (436)
268 TIGR03499 FlhF flagellar biosy 95.4 0.048 1E-06 60.9 8.2 88 199-289 193-281 (282)
269 PRK13695 putative NTPase; Prov 95.4 0.017 3.6E-07 59.6 4.3 22 202-223 2-23 (174)
270 cd03247 ABCC_cytochrome_bd The 95.4 0.095 2.1E-06 54.3 10.0 127 200-334 28-169 (178)
271 TIGR02012 tigrfam_recA protein 95.3 0.039 8.5E-07 61.6 7.4 86 198-290 53-143 (321)
272 KOG2123 Uncharacterized conser 95.3 0.0017 3.7E-08 67.4 -3.0 99 1018-1120 20-123 (388)
273 PRK04301 radA DNA repair and r 95.3 0.056 1.2E-06 61.7 8.8 57 199-256 101-161 (317)
274 cd00983 recA RecA is a bacter 95.3 0.043 9.2E-07 61.4 7.5 85 198-289 53-142 (325)
275 cd03214 ABC_Iron-Siderophores_ 95.2 0.15 3.2E-06 52.9 10.8 122 200-325 25-163 (180)
276 COG2884 FtsE Predicted ATPase 95.2 0.21 4.6E-06 49.7 10.7 62 266-327 141-204 (223)
277 COG1618 Predicted nucleotide k 95.1 0.016 3.5E-07 55.6 3.1 24 200-223 5-28 (179)
278 COG1136 SalX ABC-type antimicr 95.1 0.19 4.1E-06 52.7 11.2 62 266-327 146-210 (226)
279 KOG0473 Leucine-rich repeat pr 95.1 0.00072 1.6E-08 68.1 -6.2 87 583-670 38-124 (326)
280 KOG0734 AAA+-type ATPase conta 95.1 0.095 2.1E-06 60.0 9.4 54 172-225 304-362 (752)
281 PRK15455 PrkA family serine pr 95.1 0.016 3.4E-07 68.4 3.5 49 173-222 77-125 (644)
282 COG0468 RecA RecA/RadA recombi 95.1 0.077 1.7E-06 57.9 8.5 89 198-289 58-150 (279)
283 PRK09354 recA recombinase A; P 95.1 0.054 1.2E-06 61.1 7.4 86 198-290 58-148 (349)
284 cd00561 CobA_CobO_BtuR ATP:cor 95.1 0.075 1.6E-06 52.7 7.6 118 201-321 3-139 (159)
285 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.1 0.16 3.4E-06 50.4 10.0 106 200-325 26-132 (144)
286 PLN03187 meiotic recombination 95.1 0.06 1.3E-06 61.0 7.8 60 198-258 124-187 (344)
287 COG0572 Udk Uridine kinase [Nu 95.0 0.048 1E-06 56.4 6.4 79 198-281 6-85 (218)
288 PRK14722 flhF flagellar biosyn 95.0 0.065 1.4E-06 61.3 8.0 89 200-291 137-226 (374)
289 PRK12723 flagellar biosynthesi 95.0 0.23 4.9E-06 57.5 12.5 90 199-292 173-266 (388)
290 PRK06067 flagellar accessory p 95.0 0.1 2.2E-06 56.9 9.3 88 198-290 23-130 (234)
291 COG1121 ZnuC ABC-type Mn/Zn tr 95.0 0.17 3.7E-06 54.0 10.5 124 200-325 30-204 (254)
292 CHL00195 ycf46 Ycf46; Provisio 95.0 0.39 8.4E-06 57.6 14.7 181 172-377 228-429 (489)
293 cd03228 ABCC_MRP_Like The MRP 94.9 0.12 2.6E-06 53.0 9.2 119 200-325 28-160 (171)
294 PRK08699 DNA polymerase III su 94.9 0.11 2.4E-06 59.0 9.6 71 279-349 112-184 (325)
295 TIGR01817 nifA Nif-specific re 94.9 0.16 3.5E-06 62.9 12.0 134 170-319 194-340 (534)
296 COG4608 AppF ABC-type oligopep 94.9 0.11 2.3E-06 55.5 8.7 144 200-346 39-198 (268)
297 PLN03186 DNA repair protein RA 94.9 0.12 2.5E-06 58.9 9.6 60 198-258 121-184 (342)
298 PRK11608 pspF phage shock prot 94.9 0.07 1.5E-06 61.0 7.9 133 173-319 7-150 (326)
299 COG1126 GlnQ ABC-type polar am 94.9 0.33 7.1E-06 49.7 11.4 125 200-327 28-203 (240)
300 PRK07667 uridine kinase; Provi 94.8 0.045 9.8E-07 57.3 5.8 38 181-223 3-40 (193)
301 cd03223 ABCD_peroxisomal_ALDP 94.8 0.2 4.4E-06 51.0 10.4 117 200-324 27-152 (166)
302 TIGR02238 recomb_DMC1 meiotic 94.8 0.1 2.2E-06 58.9 8.8 60 198-258 94-157 (313)
303 PRK13531 regulatory ATPase Rav 94.8 0.031 6.8E-07 65.2 4.7 42 173-223 21-62 (498)
304 cd03222 ABC_RNaseL_inhibitor T 94.8 0.16 3.6E-06 51.9 9.5 105 200-326 25-138 (177)
305 TIGR02239 recomb_RAD51 DNA rep 94.8 0.084 1.8E-06 59.7 8.1 59 198-257 94-156 (316)
306 cd03216 ABC_Carb_Monos_I This 94.7 0.089 1.9E-06 53.4 7.4 118 200-325 26-147 (163)
307 PRK08233 hypothetical protein; 94.7 0.084 1.8E-06 55.0 7.5 24 200-223 3-26 (182)
308 TIGR00064 ftsY signal recognit 94.6 0.15 3.2E-06 56.4 9.4 90 199-291 71-165 (272)
309 PF00485 PRK: Phosphoribulokin 94.6 0.13 2.8E-06 54.1 8.7 81 202-284 1-87 (194)
310 KOG0744 AAA+-type ATPase [Post 94.6 0.12 2.6E-06 55.6 8.0 80 200-290 177-260 (423)
311 TIGR00390 hslU ATP-dependent p 94.6 0.073 1.6E-06 60.9 7.0 83 171-255 11-104 (441)
312 PRK09270 nucleoside triphospha 94.6 0.15 3.3E-06 55.1 9.4 26 198-223 31-56 (229)
313 PRK15429 formate hydrogenlyase 94.6 0.11 2.3E-06 66.5 9.4 134 172-319 376-520 (686)
314 PF13306 LRR_5: Leucine rich r 94.6 0.059 1.3E-06 52.3 5.6 102 578-685 3-108 (129)
315 PF06309 Torsin: Torsin; Inte 94.5 0.05 1.1E-06 50.8 4.5 52 172-223 25-76 (127)
316 KOG0728 26S proteasome regulat 94.5 1.4 3.1E-05 45.5 15.0 157 173-350 147-331 (404)
317 PRK05439 pantothenate kinase; 94.5 0.17 3.7E-06 56.4 9.5 81 198-281 84-166 (311)
318 COG1484 DnaC DNA replication p 94.5 0.092 2E-06 57.3 7.3 81 200-298 105-185 (254)
319 PLN00020 ribulose bisphosphate 94.4 0.064 1.4E-06 59.8 5.8 26 198-223 146-171 (413)
320 KOG0733 Nuclear AAA ATPase (VC 94.4 0.14 3.1E-06 59.8 8.6 99 172-291 190-293 (802)
321 KOG1532 GTPase XAB1, interacts 94.4 0.18 3.8E-06 52.9 8.5 85 198-284 17-120 (366)
322 TIGR02236 recomb_radA DNA repa 94.4 0.16 3.5E-06 57.9 9.5 57 199-256 94-154 (310)
323 cd03281 ABC_MSH5_euk MutS5 hom 94.4 0.053 1.1E-06 57.7 5.0 23 200-222 29-51 (213)
324 cd03115 SRP The signal recogni 94.4 0.13 2.8E-06 53.0 7.9 22 202-223 2-23 (173)
325 cd03246 ABCC_Protease_Secretio 94.4 0.15 3.2E-06 52.5 8.2 121 200-324 28-160 (173)
326 COG1419 FlhF Flagellar GTP-bin 94.3 0.11 2.4E-06 58.7 7.6 88 199-290 202-291 (407)
327 PF05659 RPW8: Arabidopsis bro 94.3 0.44 9.6E-06 46.6 10.8 80 3-86 6-86 (147)
328 PRK05703 flhF flagellar biosyn 94.3 0.22 4.8E-06 58.8 10.5 88 200-290 221-309 (424)
329 TIGR02974 phageshock_pspF psp 94.3 0.14 3E-06 58.5 8.6 45 174-223 1-45 (329)
330 PRK12727 flagellar biosynthesi 94.3 0.18 3.9E-06 59.7 9.3 89 199-290 349-438 (559)
331 TIGR02858 spore_III_AA stage I 94.2 0.18 3.8E-06 55.4 8.8 130 180-325 97-234 (270)
332 PHA02244 ATPase-like protein 94.2 0.13 2.8E-06 58.0 7.8 43 172-223 96-142 (383)
333 KOG0733 Nuclear AAA ATPase (VC 94.2 0.4 8.7E-06 56.3 11.7 154 201-377 546-718 (802)
334 KOG2170 ATPase of the AAA+ sup 94.2 0.099 2.1E-06 55.9 6.3 119 172-304 82-202 (344)
335 PRK14974 cell division protein 94.1 0.27 5.8E-06 55.8 10.2 91 199-292 139-234 (336)
336 TIGR00554 panK_bact pantothena 94.1 0.19 4.1E-06 55.6 8.8 25 198-222 60-84 (290)
337 PTZ00035 Rad51 protein; Provis 94.1 0.26 5.5E-06 56.4 10.1 59 198-257 116-178 (337)
338 KOG0735 AAA+-type ATPase [Post 94.1 0.18 3.9E-06 60.0 8.8 74 200-290 431-504 (952)
339 cd01122 GP4d_helicase GP4d_hel 94.1 0.3 6.5E-06 54.7 10.6 53 200-255 30-82 (271)
340 PRK07132 DNA polymerase III su 94.1 0.95 2.1E-05 50.6 14.2 156 200-382 18-184 (299)
341 PRK05022 anaerobic nitric oxid 94.1 0.17 3.8E-06 61.9 9.3 135 171-319 186-331 (509)
342 TIGR03877 thermo_KaiC_1 KaiC d 94.0 0.23 5E-06 54.1 9.3 49 198-250 19-67 (237)
343 PRK10867 signal recognition pa 94.0 0.17 3.7E-06 59.3 8.6 24 199-222 99-122 (433)
344 cd03230 ABC_DR_subfamily_A Thi 94.0 0.29 6.3E-06 50.3 9.5 121 200-326 26-161 (173)
345 PRK06547 hypothetical protein; 94.0 0.066 1.4E-06 54.5 4.5 25 199-223 14-38 (172)
346 cd03229 ABC_Class3 This class 93.9 0.16 3.5E-06 52.5 7.6 23 200-222 26-48 (178)
347 cd02025 PanK Pantothenate kina 93.9 0.17 3.6E-06 54.2 7.8 22 202-223 1-22 (220)
348 PRK12724 flagellar biosynthesi 93.9 0.12 2.7E-06 59.4 7.0 24 199-222 222-245 (432)
349 PRK12726 flagellar biosynthesi 93.9 0.22 4.7E-06 56.4 8.8 91 198-291 204-296 (407)
350 PRK13765 ATP-dependent proteas 93.9 0.07 1.5E-06 65.7 5.5 76 172-258 31-106 (637)
351 PTZ00301 uridine kinase; Provi 93.9 0.06 1.3E-06 56.7 4.2 23 200-222 3-25 (210)
352 cd01125 repA Hexameric Replica 93.8 0.34 7.4E-06 52.9 10.2 21 202-222 3-23 (239)
353 TIGR00959 ffh signal recogniti 93.7 0.19 4.1E-06 59.0 8.3 90 199-290 98-192 (428)
354 COG1102 Cmk Cytidylate kinase 93.7 0.12 2.7E-06 49.8 5.5 44 202-258 2-45 (179)
355 PRK10733 hflB ATP-dependent me 93.6 0.58 1.3E-05 58.9 13.0 158 172-350 152-335 (644)
356 KOG0730 AAA+-type ATPase [Post 93.6 1.6 3.4E-05 52.4 15.3 52 172-223 434-491 (693)
357 PF07726 AAA_3: ATPase family 93.6 0.039 8.4E-07 51.7 1.9 27 203-231 2-28 (131)
358 cd02019 NK Nucleoside/nucleoti 93.6 0.048 1E-06 45.9 2.3 22 202-223 1-22 (69)
359 PF13238 AAA_18: AAA domain; P 93.6 0.044 9.6E-07 53.2 2.5 21 203-223 1-21 (129)
360 PRK06002 fliI flagellum-specif 93.6 0.29 6.3E-06 57.1 9.4 87 200-289 165-263 (450)
361 TIGR01650 PD_CobS cobaltochela 93.6 2.1 4.6E-05 47.9 15.6 40 174-222 47-86 (327)
362 PRK13539 cytochrome c biogenes 93.6 0.25 5.4E-06 52.6 8.3 63 273-338 138-202 (207)
363 PRK05201 hslU ATP-dependent pr 93.5 0.16 3.5E-06 58.2 7.0 53 171-223 14-73 (443)
364 COG2842 Uncharacterized ATPase 93.5 0.83 1.8E-05 49.4 11.8 96 200-304 94-189 (297)
365 TIGR00235 udk uridine kinase. 93.5 0.064 1.4E-06 57.1 3.6 26 198-223 4-29 (207)
366 PF01583 APS_kinase: Adenylyls 93.4 0.082 1.8E-06 52.2 4.0 36 200-237 2-37 (156)
367 PF03215 Rad17: Rad17 cell cyc 93.4 0.22 4.7E-06 60.1 8.3 59 173-237 20-78 (519)
368 cd03217 ABC_FeS_Assembly ABC-t 93.4 0.3 6.5E-06 51.6 8.6 122 200-325 26-169 (200)
369 PRK13948 shikimate kinase; Pro 93.4 0.38 8.3E-06 49.4 9.0 24 199-222 9-32 (182)
370 PF07724 AAA_2: AAA domain (Cd 93.4 0.033 7.1E-07 56.7 1.2 42 200-243 3-45 (171)
371 PRK05480 uridine/cytidine kina 93.4 0.063 1.4E-06 57.3 3.4 25 199-223 5-29 (209)
372 cd01121 Sms Sms (bacterial rad 93.4 0.23 5.1E-06 57.3 8.2 83 199-289 81-167 (372)
373 PF00154 RecA: recA bacterial 93.3 0.15 3.3E-06 56.9 6.3 86 198-290 51-141 (322)
374 TIGR00150 HI0065_YjeE ATPase, 93.3 0.11 2.3E-06 49.8 4.5 41 179-224 6-46 (133)
375 PF12775 AAA_7: P-loop contain 93.3 0.11 2.3E-06 57.5 5.1 95 181-297 22-117 (272)
376 PRK00771 signal recognition pa 93.3 0.26 5.7E-06 58.0 8.6 57 199-258 94-152 (437)
377 COG0563 Adk Adenylate kinase a 93.3 0.11 2.3E-06 53.3 4.6 22 202-223 2-23 (178)
378 COG4088 Predicted nucleotide k 93.2 0.2 4.4E-06 50.3 6.2 22 201-222 2-23 (261)
379 COG0396 sufC Cysteine desulfur 93.2 0.81 1.8E-05 47.4 10.6 64 270-333 152-217 (251)
380 cd03282 ABC_MSH4_euk MutS4 hom 93.1 0.071 1.5E-06 56.1 3.3 119 200-327 29-158 (204)
381 COG1428 Deoxynucleoside kinase 93.1 0.06 1.3E-06 54.8 2.6 24 200-223 4-27 (216)
382 cd01135 V_A-ATPase_B V/A-type 93.1 0.46 1E-05 51.6 9.4 91 200-290 69-176 (276)
383 PF00006 ATP-synt_ab: ATP synt 93.1 0.21 4.6E-06 52.6 6.7 86 200-289 15-114 (215)
384 cd02028 UMPK_like Uridine mono 93.1 0.14 3E-06 52.9 5.2 22 202-223 1-22 (179)
385 PF08298 AAA_PrkA: PrkA AAA do 93.1 0.12 2.5E-06 57.7 4.8 51 171-222 60-110 (358)
386 COG4181 Predicted ABC-type tra 93.0 0.91 2E-05 44.4 10.0 128 201-329 37-216 (228)
387 cd03215 ABC_Carb_Monos_II This 93.0 0.35 7.5E-06 50.3 8.2 24 200-223 26-49 (182)
388 PF03308 ArgK: ArgK protein; 93.0 0.14 3E-06 54.3 5.1 60 180-244 14-73 (266)
389 PF13671 AAA_33: AAA domain; P 93.0 0.072 1.6E-06 52.9 3.0 21 202-222 1-21 (143)
390 COG1224 TIP49 DNA helicase TIP 93.0 0.29 6.2E-06 53.6 7.4 55 171-230 38-95 (450)
391 COG0464 SpoVK ATPases of the A 92.9 0.6 1.3E-05 57.4 11.4 133 198-351 274-424 (494)
392 cd03244 ABCC_MRP_domain2 Domai 92.9 0.73 1.6E-05 49.7 10.8 24 200-223 30-53 (221)
393 KOG0739 AAA+-type ATPase [Post 92.9 1.4 3.1E-05 46.9 12.1 179 172-377 133-335 (439)
394 cd02027 APSK Adenosine 5'-phos 92.9 0.25 5.3E-06 49.3 6.5 22 202-223 1-22 (149)
395 PF13504 LRR_7: Leucine rich r 92.9 0.073 1.6E-06 30.4 1.6 16 588-603 2-17 (17)
396 PTZ00494 tuzin-like protein; P 92.9 0.86 1.9E-05 51.7 11.1 167 169-349 368-543 (664)
397 COG1703 ArgK Putative periplas 92.8 0.13 2.7E-06 55.3 4.4 63 182-249 38-100 (323)
398 cd00267 ABC_ATPase ABC (ATP-bi 92.8 0.3 6.5E-06 49.3 7.2 120 200-326 25-146 (157)
399 PRK10463 hydrogenase nickel in 92.8 0.71 1.5E-05 50.7 10.3 88 198-291 102-195 (290)
400 COG4240 Predicted kinase [Gene 92.8 0.46 1E-05 48.5 8.1 84 198-282 48-135 (300)
401 TIGR01069 mutS2 MutS2 family p 92.7 0.43 9.3E-06 60.9 9.9 185 200-401 322-518 (771)
402 PRK08972 fliI flagellum-specif 92.7 0.36 7.9E-06 56.1 8.4 86 200-289 162-261 (444)
403 KOG0473 Leucine-rich repeat pr 92.7 0.0038 8.3E-08 63.1 -6.5 88 599-687 30-118 (326)
404 PRK13543 cytochrome c biogenes 92.7 0.97 2.1E-05 48.4 11.3 24 200-223 37-60 (214)
405 PF08433 KTI12: Chromatin asso 92.7 0.15 3.3E-06 55.9 5.2 23 201-223 2-24 (270)
406 cd03369 ABCC_NFT1 Domain 2 of 92.7 1.1 2.3E-05 47.8 11.6 23 200-222 34-56 (207)
407 cd02024 NRK1 Nicotinamide ribo 92.7 0.18 3.8E-06 52.0 5.2 22 202-223 1-22 (187)
408 PRK06762 hypothetical protein; 92.7 0.086 1.9E-06 53.9 3.0 24 200-223 2-25 (166)
409 PRK10820 DNA-binding transcrip 92.6 0.34 7.3E-06 59.4 8.6 134 172-320 204-349 (520)
410 PRK04328 hypothetical protein; 92.6 0.34 7.3E-06 53.1 7.8 41 199-241 22-62 (249)
411 PF13504 LRR_7: Leucine rich r 92.6 0.073 1.6E-06 30.4 1.3 16 611-626 2-17 (17)
412 TIGR01420 pilT_fam pilus retra 92.6 0.27 5.8E-06 56.8 7.3 113 200-324 122-234 (343)
413 PRK14721 flhF flagellar biosyn 92.6 0.45 9.8E-06 55.5 9.0 88 199-289 190-278 (420)
414 COG0714 MoxR-like ATPases [Gen 92.4 0.22 4.8E-06 57.3 6.4 63 173-249 25-87 (329)
415 KOG0736 Peroxisome assembly fa 92.4 3.1 6.8E-05 50.7 15.5 152 172-344 672-850 (953)
416 cd03285 ABC_MSH2_euk MutS2 hom 92.4 0.069 1.5E-06 57.1 2.1 176 199-389 29-219 (222)
417 TIGR03881 KaiC_arch_4 KaiC dom 92.4 0.52 1.1E-05 51.1 9.0 41 199-241 19-59 (229)
418 PRK09544 znuC high-affinity zi 92.4 0.84 1.8E-05 50.1 10.6 24 200-223 30-53 (251)
419 TIGR00764 lon_rel lon-related 92.4 0.16 3.4E-06 63.0 5.4 75 172-258 18-93 (608)
420 TIGR01360 aden_kin_iso1 adenyl 92.4 0.1 2.2E-06 54.7 3.3 24 199-222 2-25 (188)
421 TIGR00708 cobA cob(I)alamin ad 92.4 0.61 1.3E-05 46.9 8.4 119 200-320 5-140 (173)
422 TIGR01425 SRP54_euk signal rec 92.3 0.47 1E-05 55.3 8.8 24 199-222 99-122 (429)
423 PTZ00185 ATPase alpha subunit; 92.3 0.67 1.4E-05 54.4 9.8 92 200-291 189-300 (574)
424 TIGR03522 GldA_ABC_ATP gliding 92.3 0.81 1.7E-05 51.9 10.7 24 200-223 28-51 (301)
425 PRK03839 putative kinase; Prov 92.3 0.091 2E-06 54.5 2.8 22 202-223 2-23 (180)
426 cd03233 ABC_PDR_domain1 The pl 92.3 1.1 2.4E-05 47.4 11.0 24 200-223 33-56 (202)
427 PTZ00088 adenylate kinase 1; P 92.3 0.13 2.9E-06 55.0 4.0 20 203-222 9-28 (229)
428 COG2019 AdkA Archaeal adenylat 92.3 0.12 2.6E-06 50.1 3.2 23 200-222 4-26 (189)
429 TIGR03878 thermo_KaiC_2 KaiC d 92.3 0.48 1E-05 52.2 8.5 40 199-240 35-74 (259)
430 cd03280 ABC_MutS2 MutS2 homolo 92.3 0.55 1.2E-05 49.6 8.7 22 200-221 28-49 (200)
431 cd03283 ABC_MutS-like MutS-lik 92.2 0.099 2.1E-06 54.9 2.9 22 201-222 26-47 (199)
432 PF13481 AAA_25: AAA domain; P 92.2 0.32 6.8E-06 51.2 6.8 42 201-242 33-82 (193)
433 cd02021 GntK Gluconate kinase 92.2 0.88 1.9E-05 45.5 9.7 22 202-223 1-22 (150)
434 cd01136 ATPase_flagellum-secre 92.2 0.72 1.6E-05 51.9 9.7 86 200-289 69-168 (326)
435 PRK09580 sufC cysteine desulfu 92.2 0.86 1.9E-05 50.2 10.5 24 200-223 27-50 (248)
436 PRK00625 shikimate kinase; Pro 92.2 0.095 2.1E-06 53.4 2.6 22 202-223 2-23 (173)
437 cd01129 PulE-GspE PulE/GspE Th 92.1 0.42 9.2E-06 52.7 7.8 109 200-324 80-188 (264)
438 PRK04040 adenylate kinase; Pro 92.1 0.11 2.3E-06 54.0 2.9 23 200-222 2-24 (188)
439 PRK09280 F0F1 ATP synthase sub 92.1 0.47 1E-05 55.7 8.4 90 199-289 143-247 (463)
440 KOG0727 26S proteasome regulat 92.1 1.4 2.9E-05 45.7 10.5 51 173-223 156-212 (408)
441 PRK15453 phosphoribulokinase; 92.1 0.68 1.5E-05 50.3 8.9 24 199-222 4-27 (290)
442 COG0467 RAD55 RecA-superfamily 92.0 0.25 5.5E-06 54.7 6.0 42 198-241 21-62 (260)
443 PF00910 RNA_helicase: RNA hel 92.0 0.081 1.7E-06 49.2 1.7 21 203-223 1-21 (107)
444 COG5238 RNA1 Ran GTPase-activa 92.0 0.19 4.2E-06 52.6 4.4 224 1037-1287 28-282 (388)
445 PRK08149 ATP synthase SpaL; Va 92.0 0.72 1.6E-05 53.9 9.7 86 200-289 151-250 (428)
446 PRK06217 hypothetical protein; 92.0 0.22 4.7E-06 51.8 5.1 22 202-223 3-24 (183)
447 PRK14723 flhF flagellar biosyn 91.9 0.55 1.2E-05 58.6 9.1 87 200-290 185-273 (767)
448 PRK06731 flhF flagellar biosyn 91.9 0.66 1.4E-05 50.9 8.8 90 200-292 75-166 (270)
449 TIGR03498 FliI_clade3 flagella 91.9 0.65 1.4E-05 54.3 9.2 87 200-289 140-239 (418)
450 PRK06995 flhF flagellar biosyn 91.9 0.49 1.1E-05 56.1 8.3 88 200-290 256-344 (484)
451 PRK11388 DNA-binding transcrip 91.8 0.38 8.2E-06 61.2 8.0 130 172-319 325-466 (638)
452 PRK08927 fliI flagellum-specif 91.8 0.57 1.2E-05 54.7 8.7 87 199-289 157-257 (442)
453 TIGR01313 therm_gnt_kin carboh 91.8 0.3 6.4E-06 49.7 5.8 21 203-223 1-21 (163)
454 PRK10751 molybdopterin-guanine 91.8 0.17 3.7E-06 51.1 3.8 25 199-223 5-29 (173)
455 cd03240 ABC_Rad50 The catalyti 91.8 0.63 1.4E-05 49.2 8.4 62 272-335 131-196 (204)
456 PRK12597 F0F1 ATP synthase sub 91.8 0.35 7.5E-06 57.0 6.9 90 199-289 142-246 (461)
457 TIGR03771 anch_rpt_ABC anchore 91.7 1.2 2.7E-05 47.9 10.8 24 200-223 6-29 (223)
458 PF03205 MobB: Molybdopterin g 91.7 0.16 3.5E-06 49.7 3.5 39 201-240 1-39 (140)
459 TIGR03575 selen_PSTK_euk L-ser 91.7 0.47 1E-05 53.7 7.6 21 203-223 2-22 (340)
460 PF10236 DAP3: Mitochondrial r 91.6 0.95 2.1E-05 51.2 10.0 49 331-380 258-306 (309)
461 PRK08533 flagellar accessory p 91.6 0.62 1.3E-05 50.2 8.2 48 200-251 24-71 (230)
462 cd03253 ABCC_ATM1_transporter 91.6 1.3 2.7E-05 48.4 10.8 24 200-223 27-50 (236)
463 COG1066 Sms Predicted ATP-depe 91.6 0.49 1.1E-05 53.3 7.3 83 199-290 92-178 (456)
464 TIGR03600 phage_DnaB phage rep 91.5 4.9 0.00011 48.2 16.6 54 200-256 194-247 (421)
465 PRK09099 type III secretion sy 91.5 0.52 1.1E-05 55.3 8.0 87 200-289 163-262 (441)
466 KOG3864 Uncharacterized conser 91.5 0.024 5.3E-07 56.8 -2.4 62 1273-1334 121-185 (221)
467 COG0194 Gmk Guanylate kinase [ 91.5 0.21 4.6E-06 49.9 4.0 24 200-223 4-27 (191)
468 PRK00889 adenylylsulfate kinas 91.5 0.16 3.4E-06 52.5 3.4 24 200-223 4-27 (175)
469 PRK15424 propionate catabolism 91.5 0.51 1.1E-05 57.3 8.1 47 172-223 219-265 (538)
470 PRK12678 transcription termina 91.5 0.41 9E-06 56.7 6.9 86 200-289 416-512 (672)
471 PF01078 Mg_chelatase: Magnesi 91.5 0.3 6.5E-06 50.4 5.2 42 172-222 3-44 (206)
472 PRK05973 replicative DNA helic 91.4 0.69 1.5E-05 49.5 8.2 48 200-251 64-111 (237)
473 PRK10923 glnG nitrogen regulat 91.4 0.64 1.4E-05 56.9 9.2 46 173-223 139-184 (469)
474 cd03243 ABC_MutS_homologs The 91.4 0.16 3.4E-06 53.9 3.4 22 201-222 30-51 (202)
475 cd01132 F1_ATPase_alpha F1 ATP 91.4 0.62 1.3E-05 50.6 7.8 86 200-289 69-170 (274)
476 cd03213 ABCG_EPDR ABCG transpo 91.4 1.2 2.5E-05 46.8 9.9 24 200-223 35-58 (194)
477 TIGR03574 selen_PSTK L-seryl-t 91.4 0.31 6.7E-06 53.6 5.8 21 203-223 2-22 (249)
478 cd02023 UMPK Uridine monophosp 91.4 0.12 2.5E-06 54.8 2.3 21 202-222 1-21 (198)
479 cd01134 V_A-ATPase_A V/A-type 91.3 1.3 2.8E-05 49.7 10.2 48 200-251 157-205 (369)
480 PRK05922 type III secretion sy 91.3 1.1 2.3E-05 52.5 10.1 86 200-289 157-256 (434)
481 CHL00206 ycf2 Ycf2; Provisiona 91.3 1.4 3E-05 59.6 12.1 25 200-224 1630-1654(2281)
482 PRK00409 recombination and DNA 91.2 1 2.2E-05 57.7 10.9 178 199-401 326-523 (782)
483 PRK07594 type III secretion sy 91.2 0.71 1.5E-05 54.0 8.6 86 200-289 155-254 (433)
484 COG1936 Predicted nucleotide k 91.2 0.16 3.4E-06 50.0 2.7 20 202-221 2-21 (180)
485 TIGR02322 phosphon_PhnN phosph 91.1 0.15 3.3E-06 52.8 2.9 23 201-223 2-24 (179)
486 PRK10416 signal recognition pa 91.1 0.92 2E-05 51.4 9.2 25 199-223 113-137 (318)
487 PRK00131 aroK shikimate kinase 91.1 0.15 3.3E-06 52.6 2.9 24 200-223 4-27 (175)
488 TIGR01359 UMP_CMP_kin_fam UMP- 91.0 0.13 2.8E-06 53.6 2.3 21 202-222 1-21 (183)
489 cd03250 ABCC_MRP_domain1 Domai 91.0 3.4 7.3E-05 43.8 13.1 24 200-223 31-54 (204)
490 TIGR03305 alt_F1F0_F1_bet alte 91.0 0.74 1.6E-05 54.0 8.4 89 200-289 138-241 (449)
491 KOG3354 Gluconate kinase [Carb 91.0 0.67 1.5E-05 44.3 6.5 29 200-230 12-40 (191)
492 cd03287 ABC_MSH3_euk MutS3 hom 91.0 1.2 2.6E-05 47.5 9.5 119 200-326 31-160 (222)
493 COG1124 DppF ABC-type dipeptid 91.0 0.27 5.7E-06 51.4 4.3 23 200-222 33-55 (252)
494 PRK06936 type III secretion sy 90.9 1 2.2E-05 52.7 9.5 87 199-289 161-261 (439)
495 PRK13947 shikimate kinase; Pro 90.9 0.15 3.3E-06 52.4 2.5 21 202-222 3-23 (171)
496 PLN02796 D-glycerate 3-kinase 90.8 1 2.2E-05 50.7 9.0 25 199-223 99-123 (347)
497 TIGR03880 KaiC_arch_3 KaiC dom 90.8 0.95 2E-05 48.9 8.8 48 199-250 15-62 (224)
498 PRK06793 fliI flagellum-specif 90.8 0.84 1.8E-05 53.4 8.7 123 200-326 156-292 (432)
499 COG0003 ArsA Predicted ATPase 90.8 0.31 6.6E-06 54.7 5.0 48 200-249 2-49 (322)
500 PRK05688 fliI flagellum-specif 90.8 1 2.2E-05 52.8 9.4 86 200-289 168-267 (451)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=4.3e-86 Score=817.04 Aligned_cols=639 Identities=31% Similarity=0.462 Sum_probs=514.8
Q ss_pred HHHhhcchHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHhhhchhhHHHHHhHHHHHHHhhcccCCCCCCC
Q 040015 26 NLLRSRKYDDLLEKLKITLLTVTALLNDAEEKQFNSPSVGKWLHMAKDALYDAEDVLDELATEALKSKLESQSETSSNTS 105 (1399)
Q Consensus 26 ~~~~~~~~~~~~~~L~~~l~~i~~~l~~a~~~~~~~~~~~~wl~~lr~~~yd~ed~ld~~~~~~~~~~~~~~~~~~~~~~ 105 (1399)
++....++++.+..|++.|..++++++||++++.....+..|.+.+++++|++||+++.|.......+..+... +. .
T Consensus 19 ~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~~~l~--~~-~ 95 (889)
T KOG4658|consen 19 ESECLDGKDNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKANDLLS--TR-S 95 (889)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhh--hh-H
Confidence 34444567889999999999999999999999887788999999999999999999999999876554322110 00 0
Q ss_pred cccccccccCccchhHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCCCCCCCCCCCccCCCCCccccchhHHHHHH
Q 040015 106 QVSNWRVISSPFSRGIDFKMNKIIEKLEFIAKYKDILGLNNDDFRGRRPSGSGTNRRLPTTSLVDESCVYGRENDKNAIV 185 (1399)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGr~~~~~~l~ 185 (1399)
.. ..+..-..++++.+..+..+.+++-++.+..+.++....-..+.. ........++.+...+.. ||.++.++++.
T Consensus 96 ~~-~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~--~~~~~~~~e~~~~~~~~~-VG~e~~~~kl~ 171 (889)
T KOG4658|consen 96 VE-RQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGE--SLDPREKVETRPIQSESD-VGLETMLEKLW 171 (889)
T ss_pred HH-HHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccc--cccchhhcccCCCCcccc-ccHHHHHHHHH
Confidence 00 001111135667777777777777777776666654432111100 011111233444444555 99999999999
Q ss_pred HHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCcc-ccccccceEEEEeCCccCHHHHHHHHHHHccCCCCCCCc
Q 040015 186 ELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSR-VDGRFDLKVWVCVSDQFDVLRVTTTILKSVTSKPADVDD 264 (1399)
Q Consensus 186 ~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~-~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~ 264 (1399)
+.|..++ ..+++|+||||+||||||++++|+.. ++.+||.++||+||+.++...++++|++.++.......+
T Consensus 172 ~~L~~d~-------~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~ 244 (889)
T KOG4658|consen 172 NRLMEDD-------VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWED 244 (889)
T ss_pred HHhccCC-------CCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccch
Confidence 9998875 38999999999999999999999987 999999999999999999999999999999875543332
Q ss_pred -chHHHHHHHHHHhcCcceEEEecCCcCCCcchhhhhhcccCCCCCCcEEEEEcCChhhHHh-cCccceEeCCCCCccch
Q 040015 265 -DLNLLQVCLREKLAGKKFLLVLDDVWSRRNDDWDLICSPLKAGARGSKIIITTRDSSIAAS-MGTVAAHHLECLAFEDC 342 (1399)
Q Consensus 265 -~~~~l~~~l~~~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~-~~~~~~~~l~~L~~~~~ 342 (1399)
..++++..+.+.|++|||+|||||||+. .+|+.+..++|...+||||++|||++.|+.. +++...+++++|+.+||
T Consensus 245 ~~~~~~~~~i~~~L~~krfllvLDDIW~~--~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~ea 322 (889)
T KOG4658|consen 245 KEEDELASKLLNLLEGKRFLLVLDDIWEE--VDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEA 322 (889)
T ss_pred hhHHHHHHHHHHHhccCceEEEEeccccc--ccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCcccc
Confidence 3578999999999999999999999997 5799999999999999999999999999998 78889999999999999
Q ss_pred HHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCchhHHHHHHHHHhcCCChHHHHHHHhhhccCC----CCCcchHHHHH
Q 040015 343 SSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLLLAVKRMGIILRSREDKGEWYDMLNRNIWDL----PHDESSILQTL 418 (1399)
Q Consensus 343 ~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~~l~~~~~~~----~~~~~~i~~~l 418 (1399)
|.||++.||.... ..++.++++|++|+++|+|+|||++++|++|+.+++.++|+++.+...+.. +...+.|.+++
T Consensus 323 W~LF~~~v~~~~~-~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iL 401 (889)
T KOG4658|consen 323 WDLFQKKVGPNTL-GSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPIL 401 (889)
T ss_pred HHHHHHhhccccc-cccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhh
Confidence 9999999987643 334559999999999999999999999999999999999999998765542 23346899999
Q ss_pred HHhhcCCChhhhhhhhhhccCCCCcccchHHHHHHHHHhCCccccccchhHHHHHHHHHHHHHhcccccccc--CCCceE
Q 040015 419 GLSYHHLPPHLKQCFAYCSVFPAGYEFDKEKLVLLWMAEGFVQQSNAKKKLEEVGREYFHELVSRSFFRQSV--HNSSLY 496 (1399)
Q Consensus 419 ~~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~--~~~~~~ 496 (1399)
++||+.||+++|.||+|||+||+||.|+++.||.+|+|||||.+...+.+++++|++|+.+||+++|++..+ .+...|
T Consensus 402 klSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~ 481 (889)
T KOG4658|consen 402 KLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETV 481 (889)
T ss_pred hccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEE
Confidence 999999999999999999999999999999999999999999997778899999999999999999999865 245789
Q ss_pred EehHHHHHHHHHhhc-----cceEeeccccc---cccccccccceeeeeeeccccccchhhcccccCccceeccCCCCCC
Q 040015 497 VMHGLMKDLARFVSG-----EFCFRLEDKVM---DDQKRIFDKARHSSYIRCRRETSTKFEAFNEAECLRTFLPLDPTGE 568 (1399)
Q Consensus 497 ~mH~lv~~~a~~~~~-----~~~~~~~~~~~---~~~~~~~~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~l~~~~~~~~ 568 (1399)
+|||+|||||.++|+ ++..++..+.. ..+..-+..+|+++++.+..... ..-...++|+||.+.++..
T Consensus 482 kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~---~~~~~~~~L~tLll~~n~~- 557 (889)
T KOG4658|consen 482 KMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHI---AGSSENPKLRTLLLQRNSD- 557 (889)
T ss_pred EeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhc---cCCCCCCccceEEEeecch-
Confidence 999999999999999 45544443211 11122345789999988754332 2234566899999988641
Q ss_pred cccccccccccccccCCCCcccEEEecCC-CCcccCcccCCCCCCcEEeccCCccccccccccCCCCCcEEEccCCCCCC
Q 040015 569 IGVSYLADRVPRDILPRLKCLRVLSFSAC-RITALPDSVGDLKHLRYLDLSRTAIKQLPDSTGNLCNLQSIILLECYSLS 647 (1399)
Q Consensus 569 ~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~-~i~~lp~~i~~L~~L~~L~Ls~n~i~~lP~~i~~L~~L~~L~L~~~~~~~ 647 (1399)
....++..+|..++.||||||++| .+..+|++|++|.+||||+|+++.|..+|.++++|+.|.+||+..+..+.
T Consensus 558 -----~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~ 632 (889)
T KOG4658|consen 558 -----WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLE 632 (889)
T ss_pred -----hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccc
Confidence 125678888999999999999987 47899999999999999999999999999999999999999999998888
Q ss_pred CcChhhccCCCCCEEEccCCcccccCccccCCCCCCccCceee
Q 040015 648 KLPTDLGNLTGLRHLRMSGSRLREMPMKMYKLKNLQTLSHFVV 690 (1399)
Q Consensus 648 ~lP~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~ 690 (1399)
.+|..+..|++||+|.+.......-...++.+.+|++|..+..
T Consensus 633 ~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 633 SIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred cccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence 8888788899999999987653222222455566666655544
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=2.6e-63 Score=655.27 Aligned_cols=459 Identities=22% Similarity=0.294 Sum_probs=317.6
Q ss_pred CCCccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEe---CCc-----
Q 040015 170 DESCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCV---SDQ----- 241 (1399)
Q Consensus 170 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~---~~~----- 241 (1399)
+...+|||++.++++..+|.... .++++|+||||||+||||||+++|+ ++..+|+..+|+.. +..
T Consensus 182 ~~~~~vG~~~~l~~l~~lL~l~~-----~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~ 254 (1153)
T PLN03210 182 DFEDFVGIEDHIAKMSSLLHLES-----EEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYS 254 (1153)
T ss_pred ccccccchHHHHHHHHHHHcccc-----CceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhcc
Confidence 44579999999999999986443 4689999999999999999999999 67788998888742 111
Q ss_pred ------cC-HHHHHHHHHHHccCCCCCCCcchHHHHHHHHHHhcCcceEEEecCCcCCCcchhhhhhcccCCCCCCcEEE
Q 040015 242 ------FD-VLRVTTTILKSVTSKPADVDDDLNLLQVCLREKLAGKKFLLVLDDVWSRRNDDWDLICSPLKAGARGSKII 314 (1399)
Q Consensus 242 ------~~-~~~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~il 314 (1399)
+. ...+.++++.++......... . ...+++.++++|+||||||||+. ++|+.+.....+.+.||+||
T Consensus 255 ~~~~~~~~~~~~l~~~~l~~il~~~~~~~~---~-~~~~~~~L~~krvLLVLDdv~~~--~~l~~L~~~~~~~~~GsrII 328 (1153)
T PLN03210 255 SANPDDYNMKLHLQRAFLSEILDKKDIKIY---H-LGAMEERLKHRKVLIFIDDLDDQ--DVLDALAGQTQWFGSGSRII 328 (1153)
T ss_pred cccccccchhHHHHHHHHHHHhCCCCcccC---C-HHHHHHHHhCCeEEEEEeCCCCH--HHHHHHHhhCccCCCCcEEE
Confidence 01 123445555554333221111 1 14567889999999999999875 67888877766778899999
Q ss_pred EEcCChhhHHhcCccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCchhHHHHHHHHHhcCCChH
Q 040015 315 ITTRDSSIAASMGTVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLLLAVKRMGIILRSREDKG 394 (1399)
Q Consensus 315 vTtR~~~v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~ 394 (1399)
||||++.++..++...+|+++.+++++||+||+++||+... .++++++++++|+++|+|+|||++++|+.|+++ +.+
T Consensus 329 iTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~--~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~ 405 (1153)
T PLN03210 329 VITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNS--PPDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKE 405 (1153)
T ss_pred EEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCC--CcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHH
Confidence 99999999988777789999999999999999999997643 345688999999999999999999999999987 789
Q ss_pred HHHHHHhhhccCCCCCcchHHHHHHHhhcCCCh-hhhhhhhhhccCCCCcccchHHHHHHHHHhCCccccccchhHHHHH
Q 040015 395 EWYDMLNRNIWDLPHDESSILQTLGLSYHHLPP-HLKQCFAYCSVFPAGYEFDKEKLVLLWMAEGFVQQSNAKKKLEEVG 473 (1399)
Q Consensus 395 ~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~-~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~ 473 (1399)
+|+.++++..+.. +..|.++|++||+.|++ ..|.||+++|+||.+..++ .+..|+|.+....
T Consensus 406 ~W~~~l~~L~~~~---~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~----------- 468 (1153)
T PLN03210 406 DWMDMLPRLRNGL---DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDV----------- 468 (1153)
T ss_pred HHHHHHHHHHhCc---cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCc-----------
Confidence 9999999876533 34699999999999987 5999999999999987654 4677888765432
Q ss_pred HHHHHHHHhccccccccCCCceEEehHHHHHHHHHhhccce-------Eeeccc-ccc--ccccccccceeeeeeecccc
Q 040015 474 REYFHELVSRSFFRQSVHNSSLYVMHGLMKDLARFVSGEFC-------FRLEDK-VMD--DQKRIFDKARHSSYIRCRRE 543 (1399)
Q Consensus 474 ~~~~~~L~~~~l~~~~~~~~~~~~mH~lv~~~a~~~~~~~~-------~~~~~~-~~~--~~~~~~~~~r~ls~~~~~~~ 543 (1399)
+..++.|+++||++... ..+.|||++|+||+.++.++. +..... ... ........++++++......
T Consensus 469 ~~~l~~L~~ksLi~~~~---~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~ 545 (1153)
T PLN03210 469 NIGLKNLVDKSLIHVRE---DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEID 545 (1153)
T ss_pred hhChHHHHhcCCEEEcC---CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccc
Confidence 22388999999998753 579999999999999987653 111100 000 00111234555554432211
Q ss_pred c-cchhhcccccCccceeccCCCCCCcccccccccccccccCCCCcccEEEecCCCCcccCcccCCCCCCcEEeccCCcc
Q 040015 544 T-STKFEAFNEAECLRTFLPLDPTGEIGVSYLADRVPRDILPRLKCLRVLSFSACRITALPDSVGDLKHLRYLDLSRTAI 622 (1399)
Q Consensus 544 ~-~~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~Ls~n~i 622 (1399)
. .....+|.++++|+.|.+..+.... .+.....+|.++..-..+||+|++.++.++.+|..| ...+|++|+|++|.+
T Consensus 546 ~~~i~~~aF~~m~~L~~L~~~~~~~~~-~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l 623 (1153)
T PLN03210 546 ELHIHENAFKGMRNLLFLKFYTKKWDQ-KKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKL 623 (1153)
T ss_pred eeeecHHHHhcCccccEEEEecccccc-cccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccc
Confidence 1 1112345566666666554332100 001112334433222244666666666666666655 346666666666666
Q ss_pred ccccccccCCCCCcEEEccCCCCCCCcChhhccCCCCCEEEccCC
Q 040015 623 KQLPDSTGNLCNLQSIILLECYSLSKLPTDLGNLTGLRHLRMSGS 667 (1399)
Q Consensus 623 ~~lP~~i~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~ 667 (1399)
..+|..+..+++|++|++++|..+..+|. ++.+++|++|++++|
T Consensus 624 ~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c 667 (1153)
T PLN03210 624 EKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDC 667 (1153)
T ss_pred cccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCC
Confidence 66666666666666666666555555553 555666666666554
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=3e-42 Score=391.38 Aligned_cols=279 Identities=39% Similarity=0.640 Sum_probs=227.2
Q ss_pred chhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHHHHcc
Q 040015 177 RENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTILKSVT 256 (1399)
Q Consensus 177 r~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 256 (1399)
||.++++|.++|.... .+.++|+|+||||+||||||++++++..++.+|+.++||.+++..+..+++..|+.+++
T Consensus 1 re~~~~~l~~~L~~~~-----~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~ 75 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS-----NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLG 75 (287)
T ss_dssp -HHHHHHHHHHHHTTT-----TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhhCCC-----CCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccccccccccccccccc
Confidence 7999999999998743 46899999999999999999999997678999999999999999999999999999998
Q ss_pred CCCCC--CCcchHHHHHHHHHHhcCcceEEEecCCcCCCcchhhhhhcccCCCCCCcEEEEEcCChhhHHhcCc-cceEe
Q 040015 257 SKPAD--VDDDLNLLQVCLREKLAGKKFLLVLDDVWSRRNDDWDLICSPLKAGARGSKIIITTRDSSIAASMGT-VAAHH 333 (1399)
Q Consensus 257 ~~~~~--~~~~~~~l~~~l~~~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~~-~~~~~ 333 (1399)
..... ...+.++....+.+.+.++|+||||||||+. ..|+.+...++....|++||||||+..++..++. ...++
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~ 153 (287)
T PF00931_consen 76 EPDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDE--EDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIE 153 (287)
T ss_dssp CC-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SH--HHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEE
T ss_pred ccccccccccccccccccchhhhccccceeeeeeeccc--cccccccccccccccccccccccccccccccccccccccc
Confidence 87543 2334788999999999999999999999875 5888888888777789999999999999877654 67899
Q ss_pred CCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCchhHHHHHHHHHhcCCChHHHHHHHhhhccCCC---CC
Q 040015 334 LECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLLLAVKRMGIILRSREDKGEWYDMLNRNIWDLP---HD 410 (1399)
Q Consensus 334 l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~~l~~~~~~~~---~~ 410 (1399)
+++|+.++|++||.+.++... ...++..++++++|+++|+|+||||+++|++|+.+.+..+|++++++..+... +.
T Consensus 154 l~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~ 232 (287)
T PF00931_consen 154 LEPLSEEEALELFKKRAGRKE-SESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDY 232 (287)
T ss_dssp CSS--HHHHHHHHHHHHTSHS-----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGS
T ss_pred ccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999997655 12334556789999999999999999999999776678899999877554442 23
Q ss_pred cchHHHHHHHhhcCCChhhhhhhhhhccCCCCcccchHHHHHHHHHhCCcccc
Q 040015 411 ESSILQTLGLSYHHLPPHLKQCFAYCSVFPAGYEFDKEKLVLLWMAEGFVQQS 463 (1399)
Q Consensus 411 ~~~i~~~l~~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~~ 463 (1399)
...+..++.+||+.||++.|+||+|||+||+++.|+++.++++|+|||||+..
T Consensus 233 ~~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 233 DRSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp CHHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred cccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 47899999999999999999999999999999999999999999999999764
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=3.8e-35 Score=391.33 Aligned_cols=302 Identities=14% Similarity=0.122 Sum_probs=147.4
Q ss_pred cCCCCCcceeeecccCCcccccccccccCCccceeeeccchhhhhhhhhhcccccccccEEEeecCCCcccchhhhhCCC
Q 040015 1035 TGGHRSLTYMRICQISKLDCLVEGYFQHFTALEELQISHLAELMTLSNKIGLRSLLSLQRLEISECPYFKELPEKFYELS 1114 (1399)
Q Consensus 1035 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~ 1114 (1399)
+..+++|+.|++++|......+ ..+..+++|+.|++++|.....++... ..+++|+.|++++|.....+|.++..++
T Consensus 304 ~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~p~~l--~~~~~L~~L~Ls~n~l~~~~p~~~~~~~ 380 (968)
T PLN00113 304 VIQLQNLEILHLFSNNFTGKIP-VALTSLPRLQVLQLWSNKFSGEIPKNL--GKHNNLTVLDLSTNNLTGEIPEGLCSSG 380 (968)
T ss_pred HcCCCCCcEEECCCCccCCcCC-hhHhcCCCCCEEECcCCCCcCcCChHH--hCCCCCcEEECCCCeeEeeCChhHhCcC
Confidence 3445555555555554332222 224455555555555554433333322 2455555555555554444555555555
Q ss_pred CccEEEEecCCCCcccCC-CCCCCCcceEEEcCCCccccchhhhccccccCcccCCcceEEecCCCCCCccCcccccCCC
Q 040015 1115 TLKVLRISNCPSLVAFPE-MGLPSTLVGLEIRSCEALQFLPEKMMHESQKNKDAFLLEYLVIEGCPALVSLPRDKLSGTL 1193 (1399)
Q Consensus 1115 ~L~~L~ls~c~~l~~~~~-~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L 1193 (1399)
+|+.|++++|+....+|. ....++|+.|++++|.....+|..+ ..++ +|
T Consensus 381 ~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~-------~~l~-----------------------~L 430 (968)
T PLN00113 381 NLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEF-------TKLP-----------------------LV 430 (968)
T ss_pred CCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhH-------hcCC-----------------------CC
Confidence 555555555443333331 2223444444444443333333221 1233 44
Q ss_pred CeEeeecCCCCCccCccccccccccceeccccCCCCCCceEeecCCCCCcccCCCCCCCCCccceecccccCCccCcccc
Q 040015 1194 KVLEIENCGNLQSLPEQMICSSLENLKVAGCLHNLAFLDHLEIDDCPLLQSFPEPCLPTSMLRYARISNCQNLKFLPNGM 1273 (1399)
Q Consensus 1194 ~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~ 1273 (1399)
+.|++++|.....++.. +..+++|+.|++++|...+.+|..+ ..++|+.|++++|.....+|..+
T Consensus 431 ~~L~Ls~N~l~~~~~~~--------------~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~ 495 (968)
T PLN00113 431 YFLDISNNNLQGRINSR--------------KWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKL 495 (968)
T ss_pred CEEECcCCcccCccChh--------------hccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhh
Confidence 44455443322222211 2344555555555555544444432 23455555555555444555555
Q ss_pred ccCCCcceEeecCCCCCccCCCC-CCCCCcceEEeccCCCCCCCcccccccCCCccEEEEcCCCCccccCCCCCCCCCcc
Q 040015 1274 YILTSLQEFSIHGCSSLMSFPEG-GLPPNLISLSILDCENLKPSSEWGLHRLTCLADFSFGGCQGLVSFPKGWFLPKNLS 1352 (1399)
Q Consensus 1274 ~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 1352 (1399)
.++++|+.|++++|.....+|.. ...++|+.|++++| .++...+..+..+++|++|++++|+....+|..+..+++|+
T Consensus 496 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 574 (968)
T PLN00113 496 GSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHN-QLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLV 574 (968)
T ss_pred hhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCC-cccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccC
Confidence 55555555555554333333322 12234444444432 23333334456667777777777776667777777777777
Q ss_pred eEEcCCCCCCCccccccCCCCCcCceeccCCCCC
Q 040015 1353 SLYLERLPNLKSLPNGLKNLKYLETLEIWECDNL 1386 (1399)
Q Consensus 1353 ~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l 1386 (1399)
.|++++|+....+|.. ..+..+....+.+++.+
T Consensus 575 ~l~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~~l 607 (968)
T PLN00113 575 QVNISHNHLHGSLPST-GAFLAINASAVAGNIDL 607 (968)
T ss_pred EEeccCCcceeeCCCc-chhcccChhhhcCCccc
Confidence 7777777666666621 22334444445555544
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=5.4e-35 Score=389.82 Aligned_cols=129 Identities=26% Similarity=0.447 Sum_probs=88.8
Q ss_pred cccccCccceeccCCCCCCcccccccccccccccCCCCcccEEEecCCCCc-ccCcccCCCCCCcEEeccCCccc-cccc
Q 040015 550 AFNEAECLRTFLPLDPTGEIGVSYLADRVPRDILPRLKCLRVLSFSACRIT-ALPDSVGDLKHLRYLDLSRTAIK-QLPD 627 (1399)
Q Consensus 550 ~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~-~lp~~i~~L~~L~~L~Ls~n~i~-~lP~ 627 (1399)
.+..+++|+.|.+.++. +.+.+|.++|..+++||+|+|++|.++ .+|. +.+++|++|+|++|.+. .+|.
T Consensus 88 ~~~~l~~L~~L~Ls~n~-------~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~ 158 (968)
T PLN00113 88 AIFRLPYIQTINLSNNQ-------LSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPN 158 (968)
T ss_pred HHhCCCCCCEEECCCCc-------cCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCCh
Confidence 45567777777776654 234567777777777777777777766 3453 45677777777777776 5677
Q ss_pred cccCCCCCcEEEccCCCCCCCcChhhccCCCCCEEEccCCccc-ccCccccCCCCCCccCc
Q 040015 628 STGNLCNLQSIILLECYSLSKLPTDLGNLTGLRHLRMSGSRLR-EMPMKMYKLKNLQTLSH 687 (1399)
Q Consensus 628 ~i~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~~ 687 (1399)
.++++++|++|++++|.....+|..|+++++|++|++++|.+. .+|..++++++|++|+.
T Consensus 159 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 219 (968)
T PLN00113 159 DIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYL 219 (968)
T ss_pred HHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEEC
Confidence 7777777777777777555677777777777777777777754 45666666666666643
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.93 E-value=1.6e-29 Score=265.38 Aligned_cols=281 Identities=21% Similarity=0.237 Sum_probs=179.2
Q ss_pred cccccccccccCCccceeeeccchhhhhhhhhhcccccccccEEEeecCCCcccchhhhhCCCCccEEEEecCCCCcc--
Q 040015 1052 LDCLVEGYFQHFTALEELQISHLAELMTLSNKIGLRSLLSLQRLEISECPYFKELPEKFYELSTLKVLRISNCPSLVA-- 1129 (1399)
Q Consensus 1052 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~ls~c~~l~~-- 1129 (1399)
+..++.....++++|..|++.+|+ ++..|.... .+.+|+.||+++|. ++.+|..++++ .|+.|.+.|||.-+-
T Consensus 240 i~~lpae~~~~L~~l~vLDLRdNk-lke~Pde~c--lLrsL~rLDlSNN~-is~Lp~sLgnl-hL~~L~leGNPlrTiRr 314 (565)
T KOG0472|consen 240 IEMLPAEHLKHLNSLLVLDLRDNK-LKEVPDEIC--LLRSLERLDLSNND-ISSLPYSLGNL-HLKFLALEGNPLRTIRR 314 (565)
T ss_pred HHhhHHHHhcccccceeeeccccc-cccCchHHH--HhhhhhhhcccCCc-cccCCcccccc-eeeehhhcCCchHHHHH
Confidence 566677777888999999999985 677777654 68899999999888 67888889999 899999999874221
Q ss_pred -cCCCCCCCCcceEEE-cCCCccc----------cchhhhccccccCcccCCcceEEecCCCCCCccCccccc----CCC
Q 040015 1130 -FPEMGLPSTLVGLEI-RSCEALQ----------FLPEKMMHESQKNKDAFLLEYLVIEGCPALVSLPRDKLS----GTL 1193 (1399)
Q Consensus 1130 -~~~~~~~~~L~~L~l-~~c~~l~----------~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~----~~L 1193 (1399)
+-..+...-|++|.= .-|..+. +.+...+.. .....+.+.|++++ ..++.+|...|- .-.
T Consensus 315 ~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~---~~~~i~tkiL~~s~-~qlt~VPdEVfea~~~~~V 390 (565)
T KOG0472|consen 315 EIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPD---IYAIITTKILDVSD-KQLTLVPDEVFEAAKSEIV 390 (565)
T ss_pred HHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccc---hhhhhhhhhhcccc-cccccCCHHHHHHhhhcce
Confidence 111111112222210 0011110 111111110 01344577777777 677777766553 126
Q ss_pred CeEeeecCCCCCccCccccccccccceeccccCCCCCCceEeecCCCCCcccCCCCCCCCCccceecccccCCccCcccc
Q 040015 1194 KVLEIENCGNLQSLPEQMICSSLENLKVAGCLHNLAFLDHLEIDDCPLLQSFPEPCLPTSMLRYARISNCQNLKFLPNGM 1273 (1399)
Q Consensus 1194 ~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~ 1273 (1399)
+..++++ +.+..+|... ..+..+.+.-+..|+....+|..+..+++|..|++++ +-+.++|..+
T Consensus 391 t~Vnfsk-NqL~elPk~L--------------~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~N-N~Ln~LP~e~ 454 (565)
T KOG0472|consen 391 TSVNFSK-NQLCELPKRL--------------VELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSN-NLLNDLPEEM 454 (565)
T ss_pred EEEeccc-chHhhhhhhh--------------HHHHHHHHHHHhhcCccccchHHHHhhhcceeeeccc-chhhhcchhh
Confidence 7778887 6677787653 3445555555566666777787788888999999988 5578899888
Q ss_pred ccCCCcceEeecCCCCCccCCCCCC-CCCcceEEeccCCCCCCCcccccccCCCccEEEEcCCCCccccCCCCCCCCCcc
Q 040015 1274 YILTSLQEFSIHGCSSLMSFPEGGL-PPNLISLSILDCENLKPSSEWGLHRLTCLADFSFGGCQGLVSFPKGWFLPKNLS 1352 (1399)
Q Consensus 1274 ~~l~~L~~L~l~~c~~l~~l~~~~~-~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 1352 (1399)
+.+..||.|+++.+ ....+|..-. +..++.+ +...+.+..+++..+.++.+|.+||+.+ +.+.++|...+++++|+
T Consensus 455 ~~lv~Lq~LnlS~N-rFr~lP~~~y~lq~lEtl-las~nqi~~vd~~~l~nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~ 531 (565)
T KOG0472|consen 455 GSLVRLQTLNLSFN-RFRMLPECLYELQTLETL-LASNNQIGSVDPSGLKNMRNLTTLDLQN-NDLQQIPPILGNMTNLR 531 (565)
T ss_pred hhhhhhheeccccc-ccccchHHHhhHHHHHHH-HhccccccccChHHhhhhhhcceeccCC-CchhhCChhhcccccee
Confidence 88888999999885 6666665211 1122222 2222456666666666677777777765 44566666666777777
Q ss_pred eEEcCCCC
Q 040015 1353 SLYLERLP 1360 (1399)
Q Consensus 1353 ~L~l~~~~ 1360 (1399)
+|+++++|
T Consensus 532 hLeL~gNp 539 (565)
T KOG0472|consen 532 HLELDGNP 539 (565)
T ss_pred EEEecCCc
Confidence 77777755
No 7
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=9.3e-24 Score=280.05 Aligned_cols=342 Identities=23% Similarity=0.374 Sum_probs=204.8
Q ss_pred CCCCCCcceeEeeccCCC--------ccccccCCC-CCcceeeecccCCcccccccccccCCccceeeeccchhhhhhhh
Q 040015 1012 ALPKLPSILELELNNCDG--------KVLHSTGGH-RSLTYMRICQISKLDCLVEGYFQHFTALEELQISHLAELMTLSN 1082 (1399)
Q Consensus 1012 ~l~~l~~L~~L~l~~~~~--------~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 1082 (1399)
.+..+++|+.|.+..... ..+..+..+ ++|+.|++.++. +..+|..+ .+.+|+.|++++|. +..+|.
T Consensus 553 aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~-l~~lP~~f--~~~~L~~L~L~~s~-l~~L~~ 628 (1153)
T PLN03210 553 AFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYP-LRCMPSNF--RPENLVKLQMQGSK-LEKLWD 628 (1153)
T ss_pred HHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCC-CCCCCCcC--CccCCcEEECcCcc-cccccc
Confidence 355677777777744321 112223332 457777777665 45555542 45677778887774 455554
Q ss_pred hhcccccccccEEEeecCCCcccchhhhhCCCCccEEEEecCCCCcccCC-CCCCCCcceEEEcCCCccccchhhhcccc
Q 040015 1083 KIGLRSLLSLQRLEISECPYFKELPEKFYELSTLKVLRISNCPSLVAFPE-MGLPSTLVGLEIRSCEALQFLPEKMMHES 1161 (1399)
Q Consensus 1083 ~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~ls~c~~l~~~~~-~~~~~~L~~L~l~~c~~l~~l~~~~~~~~ 1161 (1399)
. ...+++|+.|+|++|..++.+|. +..+++|++|++++|..+..+|. +..+++|+.|++++|+.++.+|...
T Consensus 629 ~--~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i---- 701 (1153)
T PLN03210 629 G--VHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI---- 701 (1153)
T ss_pred c--cccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC----
Confidence 3 34677788888877776666764 66777788888887777777763 4455777778888777777777543
Q ss_pred ccCcccCCcceEEecCCCCCCccCcccccCCCCeEeeecCCCCCccCccccccccccceeccccCCCCCCceEeecCCCC
Q 040015 1162 QKNKDAFLLEYLVIEGCPALVSLPRDKLSGTLKVLEIENCGNLQSLPEQMICSSLENLKVAGCLHNLAFLDHLEIDDCPL 1241 (1399)
Q Consensus 1162 ~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~~l~~L~~L~l~~~~~ 1241 (1399)
.+++|+.|++++|..+..+|. .+.+|+.|+++++ .+..+|....+++|.+|.+.+ |..
T Consensus 702 ----~l~sL~~L~Lsgc~~L~~~p~--~~~nL~~L~L~~n-~i~~lP~~~~l~~L~~L~l~~---------------~~~ 759 (1153)
T PLN03210 702 ----NLKSLYRLNLSGCSRLKSFPD--ISTNISWLDLDET-AIEEFPSNLRLENLDELILCE---------------MKS 759 (1153)
T ss_pred ----CCCCCCEEeCCCCCCcccccc--ccCCcCeeecCCC-ccccccccccccccccccccc---------------cch
Confidence 366777777877777776663 2447777777764 466666655445555554443 221
Q ss_pred Cc------c-cCCCCCCCCCccceecccccCCccCccccccCCCcceEeecCCCCCccCCCCCCCCCcceEEeccCCCCC
Q 040015 1242 LQ------S-FPEPCLPTSMLRYARISNCQNLKFLPNGMYILTSLQEFSIHGCSSLMSFPEGGLPPNLISLSILDCENLK 1314 (1399)
Q Consensus 1242 ~~------~-~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~ 1314 (1399)
.. . .+.....+++|+.|++++|+.+..+|..+.++++|+.|++++|+.++.+|....+++|+.|++++|.++.
T Consensus 760 ~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~ 839 (1153)
T PLN03210 760 EKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLR 839 (1153)
T ss_pred hhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccc
Confidence 00 0 0111112345666666666655666665666666666666666666666654445566666666665554
Q ss_pred CCcccccccCCCccEEEEcCCCCccccCCCCCCCCCcceEEcCCCCCCCccccccCCCCCcCceeccCCCCCCCCCC
Q 040015 1315 PSSEWGLHRLTCLADFSFGGCQGLVSFPKGWFLPKNLSSLYLERLPNLKSLPNGLKNLKYLETLEIWECDNLQTVPE 1391 (1399)
Q Consensus 1315 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~ 1391 (1399)
.++. ..++|+.|++++| .++.+|..+..+++|+.|++++|++++.+|..+..+++|+.+++++|++++.++-
T Consensus 840 ~~p~----~~~nL~~L~Ls~n-~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l 911 (1153)
T PLN03210 840 TFPD----ISTNISDLNLSRT-GIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASW 911 (1153)
T ss_pred cccc----cccccCEeECCCC-CCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccC
Confidence 3332 1245666666653 4455665556666666666666666666665556666666666666666665543
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.90 E-value=4.2e-26 Score=264.88 Aligned_cols=261 Identities=23% Similarity=0.319 Sum_probs=163.9
Q ss_pred CcceeeecccCCcccccccccccCCccceeeeccchhhhhhhhhhcccccccccEEEeecCCCcccchhhhhCCCCccEE
Q 040015 1040 SLTYMRICQISKLDCLVEGYFQHFTALEELQISHLAELMTLSNKIGLRSLLSLQRLEISECPYFKELPEKFYELSTLKVL 1119 (1399)
Q Consensus 1040 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L 1119 (1399)
+|++++++++. +..++ .+...+.+|+.+++.+|.. ..++.... ...+|+.|.+..|. +..+|.....+++|++|
T Consensus 242 nl~~~dis~n~-l~~lp-~wi~~~~nle~l~~n~N~l-~~lp~ri~--~~~~L~~l~~~~ne-l~yip~~le~~~sL~tL 315 (1081)
T KOG0618|consen 242 NLQYLDISHNN-LSNLP-EWIGACANLEALNANHNRL-VALPLRIS--RITSLVSLSAAYNE-LEYIPPFLEGLKSLRTL 315 (1081)
T ss_pred cceeeecchhh-hhcch-HHHHhcccceEecccchhH-HhhHHHHh--hhhhHHHHHhhhhh-hhhCCCcccccceeeee
Confidence 45555555554 44455 5667778888888888754 55555433 67788888888887 66777777778888888
Q ss_pred EEecCCCCcccCCCCCC---CCcceEEEcCCCccccchhhhccccccCcccCCcceEEecCCCCCCc--cCcccccCCCC
Q 040015 1120 RISNCPSLVAFPEMGLP---STLVGLEIRSCEALQFLPEKMMHESQKNKDAFLLEYLVIEGCPALVS--LPRDKLSGTLK 1194 (1399)
Q Consensus 1120 ~ls~c~~l~~~~~~~~~---~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~--l~~~~~~~~L~ 1194 (1399)
++.. +.+.++|...+. .+|..|..+. +.++.+|.. ....++.|+.|++.+ +.+++ +|.......|+
T Consensus 316 dL~~-N~L~~lp~~~l~v~~~~l~~ln~s~-n~l~~lp~~------~e~~~~~Lq~Lylan-N~Ltd~c~p~l~~~~hLK 386 (1081)
T KOG0618|consen 316 DLQS-NNLPSLPDNFLAVLNASLNTLNVSS-NKLSTLPSY------EENNHAALQELYLAN-NHLTDSCFPVLVNFKHLK 386 (1081)
T ss_pred eehh-ccccccchHHHhhhhHHHHHHhhhh-ccccccccc------cchhhHHHHHHHHhc-Ccccccchhhhcccccee
Confidence 8887 456666652221 3344555443 344555421 112455677777766 34432 23322234788
Q ss_pred eEeeecCCCCCccCccccccccccceeccccCCCCCCceEeecCCCCCcccCCCCCCCCCccceecccccCCccCccccc
Q 040015 1195 VLEIENCGNLQSLPEQMICSSLENLKVAGCLHNLAFLDHLEIDDCPLLQSFPEPCLPTSMLRYARISNCQNLKFLPNGMY 1274 (1399)
Q Consensus 1195 ~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~ 1274 (1399)
.|++++ +.+.++|... +.++..|++|+|++|. ++.+|.....++.|++|...+ +.+..+| .+.
T Consensus 387 VLhLsy-NrL~~fpas~-------------~~kle~LeeL~LSGNk-L~~Lp~tva~~~~L~tL~ahs-N~l~~fP-e~~ 449 (1081)
T KOG0618|consen 387 VLHLSY-NRLNSFPASK-------------LRKLEELEELNLSGNK-LTTLPDTVANLGRLHTLRAHS-NQLLSFP-ELA 449 (1081)
T ss_pred eeeecc-cccccCCHHH-------------HhchHHhHHHhcccch-hhhhhHHHHhhhhhHHHhhcC-Cceeech-hhh
Confidence 888887 6778887765 5778888888888877 566777777888888887766 4466777 567
Q ss_pred cCCCcceEeecCCCCCccCCC-CCCC-CCcceEEeccCCCCCCCcccccccCCCccEEEEcC
Q 040015 1275 ILTSLQEFSIHGCSSLMSFPE-GGLP-PNLISLSILDCENLKPSSEWGLHRLTCLADFSFGG 1334 (1399)
Q Consensus 1275 ~l~~L~~L~l~~c~~l~~l~~-~~~~-~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~ 1334 (1399)
.++.|+.+|++. +.|..+-. ...+ ++|+.|+++++..+ ......|..+..+...++.-
T Consensus 450 ~l~qL~~lDlS~-N~L~~~~l~~~~p~p~LkyLdlSGN~~l-~~d~~~l~~l~~l~~~~i~~ 509 (1081)
T KOG0618|consen 450 QLPQLKVLDLSC-NNLSEVTLPEALPSPNLKYLDLSGNTRL-VFDHKTLKVLKSLSQMDITL 509 (1081)
T ss_pred hcCcceEEeccc-chhhhhhhhhhCCCcccceeeccCCccc-ccchhhhHHhhhhhheeccc
Confidence 788888888865 45553321 1345 67777777765542 23333444555555555443
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.89 E-value=7.1e-24 Score=233.05 Aligned_cols=86 Identities=20% Similarity=0.335 Sum_probs=71.6
Q ss_pred cccEEEecCCCCccc-CcccCCCCCCcEEeccCCccccccccccCCCCCcEEEccCCCCCCCc-ChhhccCCCCCEEEcc
Q 040015 588 CLRVLSFSACRITAL-PDSVGDLKHLRYLDLSRTAIKQLPDSTGNLCNLQSIILLECYSLSKL-PTDLGNLTGLRHLRMS 665 (1399)
Q Consensus 588 ~Lr~L~Ls~~~i~~l-p~~i~~L~~L~~L~Ls~n~i~~lP~~i~~L~~L~~L~L~~~~~~~~l-P~~i~~L~~L~~L~l~ 665 (1399)
.-+.||+++|.+..+ +..|.++++|+.++|.+|.++.+|...+...+|+.|+|.+| .+.++ .+++.-++.||.|||+
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N-~I~sv~se~L~~l~alrslDLS 157 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHN-LISSVTSEELSALPALRSLDLS 157 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeecc-ccccccHHHHHhHhhhhhhhhh
Confidence 346799999999988 78889999999999999999999988888888999999998 44444 4558888999999999
Q ss_pred CCcccccCc
Q 040015 666 GSRLREMPM 674 (1399)
Q Consensus 666 ~~~l~~lp~ 674 (1399)
.|.|+.+|.
T Consensus 158 rN~is~i~~ 166 (873)
T KOG4194|consen 158 RNLISEIPK 166 (873)
T ss_pred hchhhcccC
Confidence 988887763
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.89 E-value=6.7e-24 Score=233.25 Aligned_cols=347 Identities=15% Similarity=0.231 Sum_probs=221.9
Q ss_pred CCccEEEEcCCCC----ccCCCCCCcceeEeeccCCCccccccCCCCC-cceeeecccCCcccccccccccCCccceeee
Q 040015 997 PSLKTLEIDGCQK----LAALPKLPSILELELNNCDGKVLHSTGGHRS-LTYMRICQISKLDCLVEGYFQHFTALEELQI 1071 (1399)
Q Consensus 997 ~~L~~L~i~~c~~----l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 1071 (1399)
+.-+.|++++|.. ...+-++|+|++++++++.....+.+++..+ |+.|+|.+|. +..+....++.++.|++|++
T Consensus 78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~-I~sv~se~L~~l~alrslDL 156 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNL-ISSVTSEELSALPALRSLDL 156 (873)
T ss_pred cceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccc-cccccHHHHHhHhhhhhhhh
Confidence 3456788888652 2344578888888888888777777766554 8888888776 55555555777788888888
Q ss_pred ccchhhhhhhhhhcccccccccEEEeecCCCcccchhhhhCCCCccEEEEecCCCCcccCC--CCCCCCcceEEEcCCCc
Q 040015 1072 SHLAELMTLSNKIGLRSLLSLQRLEISECPYFKELPEKFYELSTLKVLRISNCPSLVAFPE--MGLPSTLVGLEIRSCEA 1149 (1399)
Q Consensus 1072 ~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~ls~c~~l~~~~~--~~~~~~L~~L~l~~c~~ 1149 (1399)
|.|. +..++.. .+..-.++++|+|++|.+.+.-...|.++.+|-.|.++. +.++.+|. +..++.|+.|++..| .
T Consensus 157 SrN~-is~i~~~-sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsr-NrittLp~r~Fk~L~~L~~LdLnrN-~ 232 (873)
T KOG4194|consen 157 SRNL-ISEIPKP-SFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSR-NRITTLPQRSFKRLPKLESLDLNRN-R 232 (873)
T ss_pred hhch-hhcccCC-CCCCCCCceEEeeccccccccccccccccchheeeeccc-CcccccCHHHhhhcchhhhhhcccc-c
Confidence 8774 3444332 233446788888888876655556677777788888877 45666663 233455666665553 2
Q ss_pred cccchhhhccccccCcccCCcceEEecCCCCCCccCcccccCCCCeEeeecCCCCCccCccccccccccceeccccCCCC
Q 040015 1150 LQFLPEKMMHESQKNKDAFLLEYLVIEGCPALVSLPRDKLSGTLKVLEIENCGNLQSLPEQMICSSLENLKVAGCLHNLA 1229 (1399)
Q Consensus 1150 l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~~l~ 1229 (1399)
++......| ++++ +|+.|.+.. +++..+.++. |..+.
T Consensus 233 irive~ltF------qgL~-----------------------Sl~nlklqr-N~I~kL~DG~-------------Fy~l~ 269 (873)
T KOG4194|consen 233 IRIVEGLTF------QGLP-----------------------SLQNLKLQR-NDISKLDDGA-------------FYGLE 269 (873)
T ss_pred eeeehhhhh------cCch-----------------------hhhhhhhhh-cCcccccCcc-------------eeeec
Confidence 222211111 1333 445555544 3444444443 56666
Q ss_pred CCceEeecCCCCCcccCCCCCCCCCccceecccccCCccCccccccCCCcceEeecCCCCCccCCCCCC--CCCcceEEe
Q 040015 1230 FLDHLEIDDCPLLQSFPEPCLPTSMLRYARISNCQNLKFLPNGMYILTSLQEFSIHGCSSLMSFPEGGL--PPNLISLSI 1307 (1399)
Q Consensus 1230 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l 1307 (1399)
.+++|+|+.|....--...+.+++.|+.|++++|..-+.-+.++..+++|++|+|++ +.++.++.+.+ ...|+.|.+
T Consensus 270 kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~-N~i~~l~~~sf~~L~~Le~LnL 348 (873)
T KOG4194|consen 270 KMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSS-NRITRLDEGSFRVLSQLEELNL 348 (873)
T ss_pred ccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccc-cccccCChhHHHHHHHhhhhcc
Confidence 777777777665444445556667777777776554443345556667777777766 46777766544 356666666
Q ss_pred ccCCCCCCCcccccccCCCccEEEEcCCCCcccc---CCCCCCCCCcceEEcCCCCCCCccc-cccCCCCCcCceeccCC
Q 040015 1308 LDCENLKPSSEWGLHRLTCLADFSFGGCQGLVSF---PKGWFLPKNLSSLYLERLPNLKSLP-NGLKNLKYLETLEIWEC 1383 (1399)
Q Consensus 1308 ~~c~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~---~~~~~~l~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c 1383 (1399)
+. +.+..+.+.+|..+++|++|||++|...-.+ ...|..+++|++|.|.+ |+++.|| ..|..+++||+|++.++
T Consensus 349 s~-Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~N 426 (873)
T KOG4194|consen 349 SH-NSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDN 426 (873)
T ss_pred cc-cchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecC-ceeeecchhhhccCcccceecCCCC
Confidence 65 4566666677778888888888886643332 33467788888888888 5788888 67888888888888887
Q ss_pred CCCCCCCCCCCC
Q 040015 1384 DNLQTVPEEKPT 1395 (1399)
Q Consensus 1384 ~~l~~lp~~~~~ 1395 (1399)
+ |.++-.+.|.
T Consensus 427 a-iaSIq~nAFe 437 (873)
T KOG4194|consen 427 A-IASIQPNAFE 437 (873)
T ss_pred c-ceeecccccc
Confidence 4 6666544443
No 11
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.88 E-value=9.5e-25 Score=253.75 Aligned_cols=109 Identities=28% Similarity=0.449 Sum_probs=68.7
Q ss_pred ccccccccCCCCcccEEEecCCCCcccC-cccCCCCCCcEEeccCCccccccccccCCCCCcEEEccCCCCCCCcChhhc
Q 040015 576 DRVPRDILPRLKCLRVLSFSACRITALP-DSVGDLKHLRYLDLSRTAIKQLPDSTGNLCNLQSIILLECYSLSKLPTDLG 654 (1399)
Q Consensus 576 ~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~Ls~n~i~~lP~~i~~L~~L~~L~L~~~~~~~~lP~~i~ 654 (1399)
..||..++..-. +..|+++.|.+-..| +.+.+..+|+.|+|++|.+...|..|..+.+|+.|+++.| .+...|.+.+
T Consensus 11 ~~ip~~i~~~~~-~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n-~i~~vp~s~~ 88 (1081)
T KOG0618|consen 11 ELIPEQILNNEA-LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRN-YIRSVPSSCS 88 (1081)
T ss_pred cccchhhccHHH-HHhhhccccccccCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchh-hHhhCchhhh
Confidence 345555544333 666666666655554 2334444577777777777777777777777777777766 6666676677
Q ss_pred cCCCCCEEEccCCcccccCccccCCCCCCccC
Q 040015 655 NLTGLRHLRMSGSRLREMPMKMYKLKNLQTLS 686 (1399)
Q Consensus 655 ~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~ 686 (1399)
++.+|++|.|.+|.+..+|.++..+.+|+.|+
T Consensus 89 ~~~~l~~lnL~~n~l~~lP~~~~~lknl~~Ld 120 (1081)
T KOG0618|consen 89 NMRNLQYLNLKNNRLQSLPASISELKNLQYLD 120 (1081)
T ss_pred hhhcchhheeccchhhcCchhHHhhhcccccc
Confidence 77777777777776666666655555555443
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.88 E-value=1.8e-25 Score=235.13 Aligned_cols=104 Identities=29% Similarity=0.566 Sum_probs=90.5
Q ss_pred cCCCCcccEEEecCCCCcccCcccCCCCCCcEEeccCCccccccccccCCCCCcEEEccCCCCCCCcChhhccCCCCCEE
Q 040015 583 LPRLKCLRVLSFSACRITALPDSVGDLKHLRYLDLSRTAIKQLPDSTGNLCNLQSIILLECYSLSKLPTDLGNLTGLRHL 662 (1399)
Q Consensus 583 ~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~Ls~n~i~~lP~~i~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L 662 (1399)
..++..|.||++++|.+.++|.+|+.+..++.|+.++|++.++|+.++.+.+|..|+.++| ...++|++|+.+..|..|
T Consensus 64 l~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n-~~~el~~~i~~~~~l~dl 142 (565)
T KOG0472|consen 64 LKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSN-ELKELPDSIGRLLDLEDL 142 (565)
T ss_pred hhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcccc-ceeecCchHHHHhhhhhh
Confidence 4678889999999999999999999999999999999999999999999999999999988 778888889999999999
Q ss_pred EccCCcccccCccccCCCCCCccCc
Q 040015 663 RMSGSRLREMPMKMYKLKNLQTLSH 687 (1399)
Q Consensus 663 ~l~~~~l~~lp~~i~~L~~L~~L~~ 687 (1399)
+..+|+++++|.+++.+.+|..|..
T Consensus 143 ~~~~N~i~slp~~~~~~~~l~~l~~ 167 (565)
T KOG0472|consen 143 DATNNQISSLPEDMVNLSKLSKLDL 167 (565)
T ss_pred hccccccccCchHHHHHHHHHHhhc
Confidence 9999999999988887777766653
No 13
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.83 E-value=6.2e-23 Score=226.50 Aligned_cols=65 Identities=18% Similarity=0.273 Sum_probs=44.7
Q ss_pred CCCCCCceEeecCCCCCcccCCCCCCCCCccceecccccCCccCccccccCCCcceEeecCCCCCcc
Q 040015 1226 HNLAFLDHLEIDDCPLLQSFPEPCLPTSMLRYARISNCQNLKFLPNGMYILTSLQEFSIHGCSSLMS 1292 (1399)
Q Consensus 1226 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~ 1292 (1399)
+.+..|+.+...+|. ++-+|+.+..|..|+.|.|++| .+..+|+++.-++.|+.|++.++|++.-
T Consensus 313 GKL~~Levf~aanN~-LElVPEglcRC~kL~kL~L~~N-rLiTLPeaIHlL~~l~vLDlreNpnLVM 377 (1255)
T KOG0444|consen 313 GKLIQLEVFHAANNK-LELVPEGLCRCVKLQKLKLDHN-RLITLPEAIHLLPDLKVLDLRENPNLVM 377 (1255)
T ss_pred hhhhhhHHHHhhccc-cccCchhhhhhHHHHHhccccc-ceeechhhhhhcCCcceeeccCCcCccC
Confidence 556666666666554 6667777777777777777663 3556777777777777777777777653
No 14
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.78 E-value=2.8e-21 Score=213.59 Aligned_cols=332 Identities=21% Similarity=0.314 Sum_probs=154.7
Q ss_pred CCCCcceeeecccCCcccccccccccCCccceeeeccchhhhhhhhhhcccccccccEEEeecCCCcc-cchhhhhCCCC
Q 040015 1037 GHRSLTYMRICQISKLDCLVEGYFQHFTALEELQISHLAELMTLSNKIGLRSLLSLQRLEISECPYFK-ELPEKFYELST 1115 (1399)
Q Consensus 1037 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~-~l~~~~~~l~~ 1115 (1399)
.+++++.|.|.... +..+|.. ++.+.+|++|.+++|+.+ ++... +..++.|+.+.+.+|+.-. .+|..+..+..
T Consensus 30 qMt~~~WLkLnrt~-L~~vPeE-L~~lqkLEHLs~~HN~L~-~vhGE--Ls~Lp~LRsv~~R~N~LKnsGiP~diF~l~d 104 (1255)
T KOG0444|consen 30 QMTQMTWLKLNRTK-LEQVPEE-LSRLQKLEHLSMAHNQLI-SVHGE--LSDLPRLRSVIVRDNNLKNSGIPTDIFRLKD 104 (1255)
T ss_pred HhhheeEEEechhh-hhhChHH-HHHHhhhhhhhhhhhhhH-hhhhh--hccchhhHHHhhhccccccCCCCchhccccc
Confidence 34444444443332 3333333 445555555555555422 22222 2245555555555554322 24444555555
Q ss_pred ccEEEEecCCCCcccC-CCCCCCCcceEEEcCCCccccchhhhccccccCcccCCcceEEecCCCCCCccCccc-ccCCC
Q 040015 1116 LKVLRISNCPSLVAFP-EMGLPSTLVGLEIRSCEALQFLPEKMMHESQKNKDAFLLEYLVIEGCPALVSLPRDK-LSGTL 1193 (1399)
Q Consensus 1116 L~~L~ls~c~~l~~~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~-~~~~L 1193 (1399)
|..||+|+ +.++.+| ......++-.|++++ ++++++|...+. +++.|-.|++++ +.+..+|... -...|
T Consensus 105 Lt~lDLSh-NqL~EvP~~LE~AKn~iVLNLS~-N~IetIPn~lfi------nLtDLLfLDLS~-NrLe~LPPQ~RRL~~L 175 (1255)
T KOG0444|consen 105 LTILDLSH-NQLREVPTNLEYAKNSIVLNLSY-NNIETIPNSLFI------NLTDLLFLDLSN-NRLEMLPPQIRRLSML 175 (1255)
T ss_pred ceeeecch-hhhhhcchhhhhhcCcEEEEccc-CccccCCchHHH------hhHhHhhhcccc-chhhhcCHHHHHHhhh
Confidence 55555555 3444444 223334445555555 344555544433 344455555554 4444444321 11245
Q ss_pred CeEeeecCCC----CCccCccccccccccceeccc----------cCCCCCCceEeecCCCCCcccCCCCCCCCCcccee
Q 040015 1194 KVLEIENCGN----LQSLPEQMICSSLENLKVAGC----------LHNLAFLDHLEIDDCPLLQSFPEPCLPTSMLRYAR 1259 (1399)
Q Consensus 1194 ~~L~l~~c~~----l~~l~~~~~~~~L~~L~l~~~----------~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 1259 (1399)
++|.+++++. ++.+|. +.+|+.|++++. +.++.+|..++++.|+ +..+|+....+++|+.|+
T Consensus 176 qtL~Ls~NPL~hfQLrQLPs---mtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~-Lp~vPecly~l~~LrrLN 251 (1255)
T KOG0444|consen 176 QTLKLSNNPLNHFQLRQLPS---MTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN-LPIVPECLYKLRNLRRLN 251 (1255)
T ss_pred hhhhcCCChhhHHHHhcCcc---chhhhhhhcccccchhhcCCCchhhhhhhhhccccccC-CCcchHHHhhhhhhheec
Confidence 5555555331 111111 112222222221 2233344444444333 333344344444444444
Q ss_pred cccccCCccCccccccCCCcceEeecCCCCCccCCCCC-CCCCcceEEeccCCCCC-CCcccccccCCCccEEEEcCCCC
Q 040015 1260 ISNCQNLKFLPNGMYILTSLQEFSIHGCSSLMSFPEGG-LPPNLISLSILDCENLK-PSSEWGLHRLTCLADFSFGGCQG 1337 (1399)
Q Consensus 1260 l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~-~~~~L~~L~l~~c~~l~-~~~~~~l~~l~~L~~L~l~~~~~ 1337 (1399)
|++|. ++.+..+...-.+|++|+++. +.++.+|..- -.+.|+.|.+.+ ++++ +..+.+++++..|+.+..++ +.
T Consensus 252 LS~N~-iteL~~~~~~W~~lEtLNlSr-NQLt~LP~avcKL~kL~kLy~n~-NkL~FeGiPSGIGKL~~Levf~aan-N~ 327 (1255)
T KOG0444|consen 252 LSGNK-ITELNMTEGEWENLETLNLSR-NQLTVLPDAVCKLTKLTKLYANN-NKLTFEGIPSGIGKLIQLEVFHAAN-NK 327 (1255)
T ss_pred cCcCc-eeeeeccHHHHhhhhhhcccc-chhccchHHHhhhHHHHHHHhcc-CcccccCCccchhhhhhhHHHHhhc-cc
Confidence 44422 222222222333444444444 2344444321 123444444432 3333 44455666777777776665 45
Q ss_pred ccccCCCCCCCCCcceEEcCCCCCCCccccccCCCCCcCceeccCCCCCCCCCC
Q 040015 1338 LVSFPKGWFLPKNLSSLYLERLPNLKSLPNGLKNLKYLETLEIWECDNLQTVPE 1391 (1399)
Q Consensus 1338 ~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~ 1391 (1399)
++-+|+.+--+..|+.|.|+. +.+..+|.+++-++-|+.|++.++|++-.=|+
T Consensus 328 LElVPEglcRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 328 LELVPEGLCRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred cccCchhhhhhHHHHHhcccc-cceeechhhhhhcCCcceeeccCCcCccCCCC
Confidence 666777666677777777776 56777777777777777777777777765544
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.61 E-value=1.9e-17 Score=175.31 Aligned_cols=112 Identities=25% Similarity=0.330 Sum_probs=89.0
Q ss_pred ccccccccCCCCcccEEEecCCCCccc-CcccCCCCCCcEEeccC-Cccccccc-cccCCCCCcEEEccCCCCCCCcChh
Q 040015 576 DRVPRDILPRLKCLRVLSFSACRITAL-PDSVGDLKHLRYLDLSR-TAIKQLPD-STGNLCNLQSIILLECYSLSKLPTD 652 (1399)
Q Consensus 576 ~~~~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~L~~L~Ls~-n~i~~lP~-~i~~L~~L~~L~L~~~~~~~~lP~~ 652 (1399)
..||+.+|+.+++||.|||++|.|+.| |++|.+|..|-.|-+-+ |+|+.+|. .|++|..|+.|.+.-|..--.....
T Consensus 80 ~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~a 159 (498)
T KOG4237|consen 80 SSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDA 159 (498)
T ss_pred ccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHH
Confidence 578888999999999999999999988 88898888877776655 88998887 6888999999888888433344456
Q ss_pred hccCCCCCEEEccCCcccccCcc-ccCCCCCCccCc
Q 040015 653 LGNLTGLRHLRMSGSRLREMPMK-MYKLKNLQTLSH 687 (1399)
Q Consensus 653 i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~~ 687 (1399)
|..|++|..|.+..|.+..++.+ +..+.+++++..
T Consensus 160 l~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhl 195 (498)
T KOG4237|consen 160 LRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHL 195 (498)
T ss_pred HHHhhhcchhcccchhhhhhccccccchhccchHhh
Confidence 88899999999888888888774 666666666643
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.58 E-value=1.5e-14 Score=176.77 Aligned_cols=259 Identities=27% Similarity=0.269 Sum_probs=145.5
Q ss_pred cceeeecccCCcccccccccccCCccceeeeccchhhhhhhhhhcccccccccEEEeecCCCcccchhhhhCCCCccEEE
Q 040015 1041 LTYMRICQISKLDCLVEGYFQHFTALEELQISHLAELMTLSNKIGLRSLLSLQRLEISECPYFKELPEKFYELSTLKVLR 1120 (1399)
Q Consensus 1041 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~ 1120 (1399)
-..|+++.+. ++.+|.... ++|+.|++.+|. ++.+|. .+++|++|++++|. ++.+|.. .++|++|+
T Consensus 203 ~~~LdLs~~~-LtsLP~~l~---~~L~~L~L~~N~-Lt~LP~-----lp~~Lk~LdLs~N~-LtsLP~l---p~sL~~L~ 268 (788)
T PRK15387 203 NAVLNVGESG-LTTLPDCLP---AHITTLVIPDNN-LTSLPA-----LPPELRTLEVSGNQ-LTSLPVL---PPGLLELS 268 (788)
T ss_pred CcEEEcCCCC-CCcCCcchh---cCCCEEEccCCc-CCCCCC-----CCCCCcEEEecCCc-cCcccCc---ccccceee
Confidence 4456666664 445555422 356777777664 444443 35667777777765 4455532 35666777
Q ss_pred EecCCCCcccCCCCCCCCcceEEEcCCCccccchhhhccccccCcccCCcceEEecCCCCCCccCcccccCCCCeEeeec
Q 040015 1121 ISNCPSLVAFPEMGLPSTLVGLEIRSCEALQFLPEKMMHESQKNKDAFLLEYLVIEGCPALVSLPRDKLSGTLKVLEIEN 1200 (1399)
Q Consensus 1121 ls~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~ 1200 (1399)
+++| .++.+|. .+.+|+.|++++| .++.+|. ..++|+.|++++ +.+..+|. ++.+|+.|++++
T Consensus 269 Ls~N-~L~~Lp~--lp~~L~~L~Ls~N-~Lt~LP~----------~p~~L~~LdLS~-N~L~~Lp~--lp~~L~~L~Ls~ 331 (788)
T PRK15387 269 IFSN-PLTHLPA--LPSGLCKLWIFGN-QLTSLPV----------LPPGLQELSVSD-NQLASLPA--LPSELCKLWAYN 331 (788)
T ss_pred ccCC-chhhhhh--chhhcCEEECcCC-ccccccc----------cccccceeECCC-CccccCCC--Cccccccccccc
Confidence 7664 3555553 3456666666664 3444442 123466666666 35555543 344566666665
Q ss_pred CCCCCccCccccccccccceeccccCCCCCCceEeecCCCCCcccCCCCCCCCCccceecccccCCccCccccccCCCcc
Q 040015 1201 CGNLQSLPEQMICSSLENLKVAGCLHNLAFLDHLEIDDCPLLQSFPEPCLPTSMLRYARISNCQNLKFLPNGMYILTSLQ 1280 (1399)
Q Consensus 1201 c~~l~~l~~~~~~~~L~~L~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~ 1280 (1399)
+.++.+|.. ..+|+.|++++|.. ..+|.. .++|+.|++++|. +..+|.. .++|+
T Consensus 332 -N~L~~LP~l-----------------p~~Lq~LdLS~N~L-s~LP~l---p~~L~~L~Ls~N~-L~~LP~l---~~~L~ 385 (788)
T PRK15387 332 -NQLTSLPTL-----------------PSGLQELSVSDNQL-ASLPTL---PSELYKLWAYNNR-LTSLPAL---PSGLK 385 (788)
T ss_pred -Ccccccccc-----------------ccccceEecCCCcc-CCCCCC---Ccccceehhhccc-cccCccc---ccccc
Confidence 334444421 13677777777653 345542 2456777777643 5556642 35677
Q ss_pred eEeecCCCCCccCCCCCCCCCcceEEeccCCCCCCCcccccccCCCccEEEEcCCCCccccCCCCCCCCCcceEEcCCCC
Q 040015 1281 EFSIHGCSSLMSFPEGGLPPNLISLSILDCENLKPSSEWGLHRLTCLADFSFGGCQGLVSFPKGWFLPKNLSSLYLERLP 1360 (1399)
Q Consensus 1281 ~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 1360 (1399)
.|++++| .++.+|. .+++|+.|+++++ .++.++.. ..+|+.|++++|+ +..+|..+..+++|+.|+|++|+
T Consensus 386 ~LdLs~N-~Lt~LP~--l~s~L~~LdLS~N-~LssIP~l----~~~L~~L~Ls~Nq-Lt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 386 ELIVSGN-RLTSLPV--LPSELKELMVSGN-RLTSLPML----PSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred eEEecCC-cccCCCC--cccCCCEEEccCC-cCCCCCcc----hhhhhhhhhccCc-ccccChHHhhccCCCeEECCCCC
Confidence 7777774 5666664 3566777777663 34444321 2356666776643 45666666666777777777755
Q ss_pred CCCcc
Q 040015 1361 NLKSL 1365 (1399)
Q Consensus 1361 ~l~~l 1365 (1399)
.-...
T Consensus 457 Ls~~~ 461 (788)
T PRK15387 457 LSERT 461 (788)
T ss_pred CCchH
Confidence 33333
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.55 E-value=3.1e-14 Score=174.14 Aligned_cols=234 Identities=30% Similarity=0.346 Sum_probs=101.1
Q ss_pred cccEEEeecCCCcccchhhhhCCCCccEEEEecCCCCcccCCCCCCCCcceEEEcCCCccccchhhhccccccCcccCCc
Q 040015 1091 SLQRLEISECPYFKELPEKFYELSTLKVLRISNCPSLVAFPEMGLPSTLVGLEIRSCEALQFLPEKMMHESQKNKDAFLL 1170 (1399)
Q Consensus 1091 ~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~ls~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~L 1170 (1399)
+|+.|++.+|+ ++.+|. .+++|++|++++| .++.+|. .+++|+.|++++|. +..+|.. ..+|
T Consensus 223 ~L~~L~L~~N~-Lt~LP~---lp~~Lk~LdLs~N-~LtsLP~--lp~sL~~L~Ls~N~-L~~Lp~l----------p~~L 284 (788)
T PRK15387 223 HITTLVIPDNN-LTSLPA---LPPELRTLEVSGN-QLTSLPV--LPPGLLELSIFSNP-LTHLPAL----------PSGL 284 (788)
T ss_pred CCCEEEccCCc-CCCCCC---CCCCCcEEEecCC-ccCcccC--cccccceeeccCCc-hhhhhhc----------hhhc
Confidence 45555555544 333442 1345555555543 4444442 23455555555542 3333321 1224
Q ss_pred ceEEecCCCCCCccCcccccCCCCeEeeecCCCCCccCccccccccccceeccccCCCCCCceEeecCCCCCcccCCCCC
Q 040015 1171 EYLVIEGCPALVSLPRDKLSGTLKVLEIENCGNLQSLPEQMICSSLENLKVAGCLHNLAFLDHLEIDDCPLLQSFPEPCL 1250 (1399)
Q Consensus 1171 ~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 1250 (1399)
..|+++++ .++.+|. .+++|+.|++++| .++.+|.. ..+|+.|++++|.. ..+|..
T Consensus 285 ~~L~Ls~N-~Lt~LP~--~p~~L~~LdLS~N-~L~~Lp~l-----------------p~~L~~L~Ls~N~L-~~LP~l-- 340 (788)
T PRK15387 285 CKLWIFGN-QLTSLPV--LPPGLQELSVSDN-QLASLPAL-----------------PSELCKLWAYNNQL-TSLPTL-- 340 (788)
T ss_pred CEEECcCC-ccccccc--cccccceeECCCC-ccccCCCC-----------------cccccccccccCcc-cccccc--
Confidence 45555442 3444442 2234555555542 34444321 12234444444432 223321
Q ss_pred CCCCccceecccccCCccCccccccCCCcceEeecCCCCCccCCCCCCCCCcceEEeccCCCCCCCcccccccCCCccEE
Q 040015 1251 PTSMLRYARISNCQNLKFLPNGMYILTSLQEFSIHGCSSLMSFPEGGLPPNLISLSILDCENLKPSSEWGLHRLTCLADF 1330 (1399)
Q Consensus 1251 ~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L 1330 (1399)
..+|+.|+|++| .++.+|.. .++|+.|++++ +.+..+|. .+.+|+.|+++++ .++.++.. .++|+.|
T Consensus 341 -p~~Lq~LdLS~N-~Ls~LP~l---p~~L~~L~Ls~-N~L~~LP~--l~~~L~~LdLs~N-~Lt~LP~l----~s~L~~L 407 (788)
T PRK15387 341 -PSGLQELSVSDN-QLASLPTL---PSELYKLWAYN-NRLTSLPA--LPSGLKELIVSGN-RLTSLPVL----PSELKEL 407 (788)
T ss_pred -ccccceEecCCC-ccCCCCCC---Ccccceehhhc-cccccCcc--cccccceEEecCC-cccCCCCc----ccCCCEE
Confidence 124555555543 23444431 23444555544 24444443 2345555555442 33332211 2345555
Q ss_pred EEcCCCCccccCCCCCCCCCcceEEcCCCCCCCccccccCCCCCcCceeccCCC
Q 040015 1331 SFGGCQGLVSFPKGWFLPKNLSSLYLERLPNLKSLPNGLKNLKYLETLEIWECD 1384 (1399)
Q Consensus 1331 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~ 1384 (1399)
++++|. +..+|. .+.+|+.|++++ +.++.||..+.++++|+.|++++|+
T Consensus 408 dLS~N~-LssIP~---l~~~L~~L~Ls~-NqLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 408 MVSGNR-LTSLPM---LPSGLLSLSVYR-NQLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred EccCCc-CCCCCc---chhhhhhhhhcc-CcccccChHHhhccCCCeEECCCCC
Confidence 555533 333443 223455555555 3355555445555555555555554
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.37 E-value=1.6e-12 Score=160.65 Aligned_cols=244 Identities=23% Similarity=0.340 Sum_probs=149.9
Q ss_pred ccceeeeccchhhhhhhhhhcccccccccEEEeecCCCcccchhhhhCCCCccEEEEecCCCCcccCCCCCCCCcceEEE
Q 040015 1065 ALEELQISHLAELMTLSNKIGLRSLLSLQRLEISECPYFKELPEKFYELSTLKVLRISNCPSLVAFPEMGLPSTLVGLEI 1144 (1399)
Q Consensus 1065 ~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~ls~c~~l~~~~~~~~~~~L~~L~l 1144 (1399)
+...|+++++. ++.+|.. -+++|+.|+|++|+ ++.+|..+. ++|+.|++++| .++.+|. .++.+|+.|++
T Consensus 179 ~~~~L~L~~~~-LtsLP~~----Ip~~L~~L~Ls~N~-LtsLP~~l~--~nL~~L~Ls~N-~LtsLP~-~l~~~L~~L~L 248 (754)
T PRK15370 179 NKTELRLKILG-LTTIPAC----IPEQITTLILDNNE-LKSLPENLQ--GNIKTLYANSN-QLTSIPA-TLPDTIQEMEL 248 (754)
T ss_pred CceEEEeCCCC-cCcCCcc----cccCCcEEEecCCC-CCcCChhhc--cCCCEEECCCC-ccccCCh-hhhccccEEEC
Confidence 46778888764 5566643 24578888888887 556776543 58888888875 4666664 34567888888
Q ss_pred cCCCccccchhhhccccccCcccCCcceEEecCCCCCCccCcccccCCCCeEeeecCCCCCccCccccccccccceeccc
Q 040015 1145 RSCEALQFLPEKMMHESQKNKDAFLLEYLVIEGCPALVSLPRDKLSGTLKVLEIENCGNLQSLPEQMICSSLENLKVAGC 1224 (1399)
Q Consensus 1145 ~~c~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~ 1224 (1399)
++|. +..+|... ..+|+.|++++ +.+..+|.. ++++|+.|++++| +++.+|...
T Consensus 249 s~N~-L~~LP~~l---------~s~L~~L~Ls~-N~L~~LP~~-l~~sL~~L~Ls~N-~Lt~LP~~l------------- 302 (754)
T PRK15370 249 SINR-ITELPERL---------PSALQSLDLFH-NKISCLPEN-LPEELRYLSVYDN-SIRTLPAHL------------- 302 (754)
T ss_pred cCCc-cCcCChhH---------hCCCCEEECcC-CccCccccc-cCCCCcEEECCCC-ccccCcccc-------------
Confidence 8864 44566543 12477777764 566666653 3347777777774 566665421
Q ss_pred cCCCCCCceEeecCCCCCcccCCCCCCCCCccceecccccCCccCccccccCCCcceEeecCCCCCccCCCCCCCCCcce
Q 040015 1225 LHNLAFLDHLEIDDCPLLQSFPEPCLPTSMLRYARISNCQNLKFLPNGMYILTSLQEFSIHGCSSLMSFPEGGLPPNLIS 1304 (1399)
Q Consensus 1225 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~ 1304 (1399)
.++|+.|++++|... .+|..+ .++|++|++++|. ++.+|..+ .++|+.|++++| .+..+|. .++++|+.
T Consensus 303 ---p~sL~~L~Ls~N~Lt-~LP~~l--~~sL~~L~Ls~N~-Lt~LP~~l--~~sL~~L~Ls~N-~L~~LP~-~lp~~L~~ 371 (754)
T PRK15370 303 ---PSGITHLNVQSNSLT-ALPETL--PPGLKTLEAGENA-LTSLPASL--PPELQVLDVSKN-QITVLPE-TLPPTITT 371 (754)
T ss_pred ---hhhHHHHHhcCCccc-cCCccc--cccceeccccCCc-cccCChhh--cCcccEEECCCC-CCCcCCh-hhcCCcCE
Confidence 135666777766533 444432 2567777777754 55566544 367777777775 5666665 35567777
Q ss_pred EEeccCCCCCCCcccccccCCCccEEEEcCCCCccccCCCC----CCCCCcceEEcCCCC
Q 040015 1305 LSILDCENLKPSSEWGLHRLTCLADFSFGGCQGLVSFPKGW----FLPKNLSSLYLERLP 1360 (1399)
Q Consensus 1305 L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~----~~l~~L~~L~l~~~~ 1360 (1399)
|++++| +++.++... ...|+.|++++|+ +..+|..+ ...+++..|++.+|+
T Consensus 372 LdLs~N-~Lt~LP~~l---~~sL~~LdLs~N~-L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 372 LDVSRN-ALTNLPENL---PAALQIMQASRNN-LVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred EECCCC-cCCCCCHhH---HHHHHHHhhccCC-cccCchhHHHHhhcCCCccEEEeeCCC
Confidence 777664 455444321 1256667777644 33555432 334566677777754
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.36 E-value=2.7e-14 Score=133.48 Aligned_cols=100 Identities=26% Similarity=0.475 Sum_probs=83.0
Q ss_pred CCCcccEEEecCCCCcccCcccCCCCCCcEEeccCCccccccccccCCCCCcEEEccCCCCCCCcChhhccCCCCCEEEc
Q 040015 585 RLKCLRVLSFSACRITALPDSVGDLKHLRYLDLSRTAIKQLPDSTGNLCNLQSIILLECYSLSKLPTDLGNLTGLRHLRM 664 (1399)
Q Consensus 585 ~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~Ls~n~i~~lP~~i~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l 664 (1399)
.+.++..|-||+|.++.+|..|..|.+|++|++++|+|+++|.+|+.|++|++|+++-| .+..+|.+|+.++.|+.||+
T Consensus 31 ~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALEVLDL 109 (264)
T ss_pred chhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchh-hhhcCccccCCCchhhhhhc
Confidence 56778888899999999988999999999999999999999999999999999999887 78889999999999999999
Q ss_pred cCCccc--ccCccccCCCCCCcc
Q 040015 665 SGSRLR--EMPMKMYKLKNLQTL 685 (1399)
Q Consensus 665 ~~~~l~--~lp~~i~~L~~L~~L 685 (1399)
..|++. .+|..|..|+.|+.|
T Consensus 110 tynnl~e~~lpgnff~m~tlral 132 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRAL 132 (264)
T ss_pred cccccccccCCcchhHHHHHHHH
Confidence 988765 456555444444443
No 20
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.35 E-value=5e-11 Score=159.16 Aligned_cols=292 Identities=17% Similarity=0.178 Sum_probs=180.8
Q ss_pred ccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeC-CccCHHHHHHHH
Q 040015 173 CVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVS-DQFDVLRVTTTI 251 (1399)
Q Consensus 173 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i 251 (1399)
.+|-|+.-.+. |... ...+++.|+|++|.||||++..+.+. ++.++|+++. ...++......+
T Consensus 15 ~~~~R~rl~~~----l~~~------~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l 78 (903)
T PRK04841 15 NTVVRERLLAK----LSGA------NNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYL 78 (903)
T ss_pred ccCcchHHHHH----Hhcc------cCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHH
Confidence 45666644444 4322 24789999999999999999998852 2268999986 445666666777
Q ss_pred HHHccCCCCCC------------CcchHHHHHHHHHHhc--CcceEEEecCCcCCCcchhhhhhcc-cCCCCCCcEEEEE
Q 040015 252 LKSVTSKPADV------------DDDLNLLQVCLREKLA--GKKFLLVLDDVWSRRNDDWDLICSP-LKAGARGSKIIIT 316 (1399)
Q Consensus 252 ~~~l~~~~~~~------------~~~~~~l~~~l~~~l~--~~r~LlvlDdv~~~~~~~~~~l~~~-l~~~~~gs~ilvT 316 (1399)
+..+....... ..+...+...+...+. +.+++||+||+...+......+... +.....+.++|||
T Consensus 79 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~ 158 (903)
T PRK04841 79 IAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVL 158 (903)
T ss_pred HHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEE
Confidence 76664211110 0112233333333332 6789999999966543333333333 3334456788899
Q ss_pred cCChhhH---HhcCccceEeCC----CCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCchhHHHHHHHHHhc
Q 040015 317 TRDSSIA---ASMGTVAAHHLE----CLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLLLAVKRMGIILRS 389 (1399)
Q Consensus 317 tR~~~v~---~~~~~~~~~~l~----~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~ 389 (1399)
||...-. .........++. +|+.+|+.++|...... +-..+.+.+|.+.|+|.|+++..++..+..
T Consensus 159 sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~-------~~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~ 231 (903)
T PRK04841 159 SRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSS-------PIEAAESSRLCDDVEGWATALQLIALSARQ 231 (903)
T ss_pred eCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCC-------CCCHHHHHHHHHHhCChHHHHHHHHHHHhh
Confidence 9974211 111122345566 99999999999765421 112345788999999999999999887754
Q ss_pred CCChHHHHHHHhhhccCCCC-CcchHHHHHHH-hhcCCChhhhhhhhhhccCCCCcccchHHHHHHHHHhCCccccccch
Q 040015 390 REDKGEWYDMLNRNIWDLPH-DESSILQTLGL-SYHHLPPHLKQCFAYCSVFPAGYEFDKEKLVLLWMAEGFVQQSNAKK 467 (1399)
Q Consensus 390 ~~~~~~w~~~l~~~~~~~~~-~~~~i~~~l~~-sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~ 467 (1399)
..... .... +.+.. ....+...+.- .|+.||++.+..+...|+++ .|+.+.+-.. ..
T Consensus 232 ~~~~~--~~~~----~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~---~~~~~l~~~l------~~------ 290 (903)
T PRK04841 232 NNSSL--HDSA----RRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR---SMNDALIVRV------TG------ 290 (903)
T ss_pred CCCch--hhhh----HhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc---cCCHHHHHHH------cC------
Confidence 42210 0111 11111 12335554433 48899999999999999996 3443322211 11
Q ss_pred hHHHHHHHHHHHHHhcccccc-ccCCCceEEehHHHHHHHHHhh
Q 040015 468 KLEEVGREYFHELVSRSFFRQ-SVHNSSLYVMHGLMKDLARFVS 510 (1399)
Q Consensus 468 ~~~~~~~~~~~~L~~~~l~~~-~~~~~~~~~mH~lv~~~a~~~~ 510 (1399)
.+.+...+++|.+++++.. .+.+..+|++|++++++.+...
T Consensus 291 --~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 291 --EENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred --CCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 1224677999999999754 3334468999999999998765
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.33 E-value=3.2e-12 Score=158.13 Aligned_cols=247 Identities=21% Similarity=0.292 Sum_probs=172.3
Q ss_pred CCcceeeecccCCcccccccccccCCccceeeeccchhhhhhhhhhcccccccccEEEeecCCCcccchhhhhCCCCccE
Q 040015 1039 RSLTYMRICQISKLDCLVEGYFQHFTALEELQISHLAELMTLSNKIGLRSLLSLQRLEISECPYFKELPEKFYELSTLKV 1118 (1399)
Q Consensus 1039 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~ 1118 (1399)
.+.+.|+++++. ++.+|... .++|+.|++++|. ++.+|.. .+.+|++|++++|. ++.+|..+. .+|+.
T Consensus 178 ~~~~~L~L~~~~-LtsLP~~I---p~~L~~L~Ls~N~-LtsLP~~----l~~nL~~L~Ls~N~-LtsLP~~l~--~~L~~ 245 (754)
T PRK15370 178 NNKTELRLKILG-LTTIPACI---PEQITTLILDNNE-LKSLPEN----LQGNIKTLYANSNQ-LTSIPATLP--DTIQE 245 (754)
T ss_pred cCceEEEeCCCC-cCcCCccc---ccCCcEEEecCCC-CCcCChh----hccCCCEEECCCCc-cccCChhhh--ccccE
Confidence 345677887765 55555432 3578899999885 5566654 24689999999887 567776543 47999
Q ss_pred EEEecCCCCcccCCCCCCCCcceEEEcCCCccccchhhhccccccCcccCCcceEEecCCCCCCccCcccccCCCCeEee
Q 040015 1119 LRISNCPSLVAFPEMGLPSTLVGLEIRSCEALQFLPEKMMHESQKNKDAFLLEYLVIEGCPALVSLPRDKLSGTLKVLEI 1198 (1399)
Q Consensus 1119 L~ls~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l 1198 (1399)
|++++|. +..+|. .++.+|+.|++++| .++.+|... .++|+.|++++| .++.+|.. ++++|+.|++
T Consensus 246 L~Ls~N~-L~~LP~-~l~s~L~~L~Ls~N-~L~~LP~~l---------~~sL~~L~Ls~N-~Lt~LP~~-lp~sL~~L~L 311 (754)
T PRK15370 246 MELSINR-ITELPE-RLPSALQSLDLFHN-KISCLPENL---------PEELRYLSVYDN-SIRTLPAH-LPSGITHLNV 311 (754)
T ss_pred EECcCCc-cCcCCh-hHhCCCCEEECcCC-ccCcccccc---------CCCCcEEECCCC-ccccCccc-chhhHHHHHh
Confidence 9999865 556664 24578999999864 666777543 236999999885 67777753 4458899999
Q ss_pred ecCCCCCccCccccccccccceeccccCCCCCCceEeecCCCCCcccCCCCCCCCCccceecccccCCccCccccccCCC
Q 040015 1199 ENCGNLQSLPEQMICSSLENLKVAGCLHNLAFLDHLEIDDCPLLQSFPEPCLPTSMLRYARISNCQNLKFLPNGMYILTS 1278 (1399)
Q Consensus 1199 ~~c~~l~~l~~~~~~~~L~~L~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~ 1278 (1399)
++ +.+..+|... .++|+.|++++|.. ..+|..+ .++|+.|++++|+ +..+|..+ .++
T Consensus 312 s~-N~Lt~LP~~l----------------~~sL~~L~Ls~N~L-t~LP~~l--~~sL~~L~Ls~N~-L~~LP~~l--p~~ 368 (754)
T PRK15370 312 QS-NSLTALPETL----------------PPGLKTLEAGENAL-TSLPASL--PPELQVLDVSKNQ-ITVLPETL--PPT 368 (754)
T ss_pred cC-CccccCCccc----------------cccceeccccCCcc-ccCChhh--cCcccEEECCCCC-CCcCChhh--cCC
Confidence 88 4566666432 25788888888864 4466544 2689999999875 56777654 378
Q ss_pred cceEeecCCCCCccCCCCCCCCCcceEEeccCCCCCCCcc---cccccCCCccEEEEcCCCC
Q 040015 1279 LQEFSIHGCSSLMSFPEGGLPPNLISLSILDCENLKPSSE---WGLHRLTCLADFSFGGCQG 1337 (1399)
Q Consensus 1279 L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~~---~~l~~l~~L~~L~l~~~~~ 1337 (1399)
|+.|+|++| .+..+|.. ++.+|+.|++++ +++..++. ..+..++.+..|++.+|+.
T Consensus 369 L~~LdLs~N-~Lt~LP~~-l~~sL~~LdLs~-N~L~~LP~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 369 ITTLDVSRN-ALTNLPEN-LPAALQIMQASR-NNLVRLPESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred cCEEECCCC-cCCCCCHh-HHHHHHHHhhcc-CCcccCchhHHHHhhcCCCccEEEeeCCCc
Confidence 999999886 67788764 566888888887 45554432 2234457888999988764
No 22
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.33 E-value=2.1e-10 Score=136.55 Aligned_cols=302 Identities=14% Similarity=0.080 Sum_probs=178.5
Q ss_pred CCCccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHH
Q 040015 170 DESCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTT 249 (1399)
Q Consensus 170 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 249 (1399)
.+..++||++++++|...+...- .+.....+.|+|++|+|||++++.++++.......-..+++++....+...++.
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~---~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~ 104 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPAL---RGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFS 104 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHh---CCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHH
Confidence 34579999999999999985532 112345678999999999999999998543222223456777777777888999
Q ss_pred HHHHHccCC-CCCCCcchHHHHHHHHHHhc--CcceEEEecCCcCCC----cchhhhhhcccCCCCCCcE--EEEEcCCh
Q 040015 250 TILKSVTSK-PADVDDDLNLLQVCLREKLA--GKKFLLVLDDVWSRR----NDDWDLICSPLKAGARGSK--IIITTRDS 320 (1399)
Q Consensus 250 ~i~~~l~~~-~~~~~~~~~~l~~~l~~~l~--~~r~LlvlDdv~~~~----~~~~~~l~~~l~~~~~gs~--ilvTtR~~ 320 (1399)
+++.++... ........+++...+.+.+. +++.+||||+++.-. .+.+..+...+.. ..+++ ||.++...
T Consensus 105 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~~~~ 183 (394)
T PRK00411 105 EIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGISSDL 183 (394)
T ss_pred HHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEEECCc
Confidence 999998762 22222235666667777664 456899999996532 1223333332222 22333 56666654
Q ss_pred hhHHhcC-------ccceEeCCCCCccchHHHHHHhhhcCCC-CCCC-ccHHHHHHHHHHHccCchhHHHHHHHHH--h-
Q 040015 321 SIAASMG-------TVAAHHLECLAFEDCSSIFMNQAFENRN-TGIS-PDLETIGAEIVNKCEGLLLAVKRMGIIL--R- 388 (1399)
Q Consensus 321 ~v~~~~~-------~~~~~~l~~L~~~~~~~lf~~~a~~~~~-~~~~-~~~~~~~~~i~~~~~g~PLai~~~~~~l--~- 388 (1399)
.+..... ....+.+++.+.++..+++..++..... ...+ ..++.+++......|..+.|+.++-.+. +
T Consensus 184 ~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~ 263 (394)
T PRK00411 184 TFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAE 263 (394)
T ss_pred chhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 4333221 1256789999999999999887633211 1112 2223333333333466777777764332 1
Q ss_pred -cC---CChHHHHHHHhhhccCCCCCcchHHHHHHHhhcCCChhhhhhhhhhccCCC--CcccchHHHHH--HHHHhCCc
Q 040015 389 -SR---EDKGEWYDMLNRNIWDLPHDESSILQTLGLSYHHLPPHLKQCFAYCSVFPA--GYEFDKEKLVL--LWMAEGFV 460 (1399)
Q Consensus 389 -~~---~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~s~fp~--~~~i~~~~li~--~w~a~g~i 460 (1399)
.. -+.++...+.+.. -.....-.+..||.+.|..+..++..-+ ...+....+.. ..+++.+-
T Consensus 264 ~~~~~~I~~~~v~~a~~~~----------~~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~ 333 (394)
T PRK00411 264 REGSRKVTEEDVRKAYEKS----------EIVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELG 333 (394)
T ss_pred HcCCCCcCHHHHHHHHHHH----------HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcC
Confidence 11 1345555555442 1223445688999998887766653321 12345555543 22332221
Q ss_pred cccccchhHHHHHHHHHHHHHhccccccc
Q 040015 461 QQSNAKKKLEEVGREYFHELVSRSFFRQS 489 (1399)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~L~~~~l~~~~ 489 (1399)
.. ........+|+++|...|+++..
T Consensus 334 ~~----~~~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 334 YE----PRTHTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred CC----cCcHHHHHHHHHHHHhcCCeEEE
Confidence 11 00123456799999999999864
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.32 E-value=8.3e-14 Score=148.03 Aligned_cols=137 Identities=23% Similarity=0.313 Sum_probs=104.1
Q ss_pred CCcccCCCCCC-CccEEEEcCCCCc----cCCCCCCcceeEeeccCCCc--cccccCCCCCcceeeecccCCcccccccc
Q 040015 987 PNLVELPTFLP-SLKTLEIDGCQKL----AALPKLPSILELELNNCDGK--VLHSTGGHRSLTYMRICQISKLDCLVEGY 1059 (1399)
Q Consensus 987 ~~l~~l~~~l~-~L~~L~i~~c~~l----~~l~~l~~L~~L~l~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 1059 (1399)
..|+++|..+| .-..+++..|..- ..|..+++|+.|+++++... .+..|.++++|..|-+.+++.++.++.+.
T Consensus 56 ~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~ 135 (498)
T KOG4237|consen 56 KGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGA 135 (498)
T ss_pred CCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhH
Confidence 35667777654 5667778775421 34456889999999887765 45678899999999999988899999999
Q ss_pred cccCCccceeeeccchhhhhhhhhhcccccccccEEEeecCCCcccchh-hhhCCCCccEEEEecCCC
Q 040015 1060 FQHFTALEELQISHLAELMTLSNKIGLRSLLSLQRLEISECPYFKELPE-KFYELSTLKVLRISNCPS 1126 (1399)
Q Consensus 1060 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~-~~~~l~~L~~L~ls~c~~ 1126 (1399)
|.++.+|+.|.+.-|.. ..+... .+..+++|..|.+.+|. +..++. .|..+.+++.+.+..++.
T Consensus 136 F~gL~slqrLllNan~i-~Cir~~-al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~ 200 (498)
T KOG4237|consen 136 FGGLSSLQRLLLNANHI-NCIRQD-ALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPF 200 (498)
T ss_pred hhhHHHHHHHhcChhhh-cchhHH-HHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCcc
Confidence 99999999998887753 333322 35589999999999998 555554 788889999998887763
No 24
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.24 E-value=1.7e-09 Score=127.33 Aligned_cols=301 Identities=13% Similarity=0.080 Sum_probs=174.2
Q ss_pred CccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCcccc-ccc---cceEEEEeCCccCHHHH
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVD-GRF---DLKVWVCVSDQFDVLRV 247 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~-~~f---~~~~wv~~~~~~~~~~~ 247 (1399)
..++||++++++|..+|...- .+.....+.|+|++|+|||++++.+++..... ... -..+|+++....+...+
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~---~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~ 91 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPIL---RGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQV 91 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHH---cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHH
Confidence 469999999999999997532 11234578999999999999999999742211 111 24567888777778889
Q ss_pred HHHHHHHcc---CCCCCCCcchHHHHHHHHHHh--cCcceEEEecCCcCCC---cchhhhhhccc-CCCC--CCcEEEEE
Q 040015 248 TTTILKSVT---SKPADVDDDLNLLQVCLREKL--AGKKFLLVLDDVWSRR---NDDWDLICSPL-KAGA--RGSKIIIT 316 (1399)
Q Consensus 248 ~~~i~~~l~---~~~~~~~~~~~~l~~~l~~~l--~~~r~LlvlDdv~~~~---~~~~~~l~~~l-~~~~--~gs~ilvT 316 (1399)
+.++++++. ........+..+....+.+.+ .+++++||||+++.-. .+....+.... .... ....+|++
T Consensus 92 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i 171 (365)
T TIGR02928 92 LVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGI 171 (365)
T ss_pred HHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEE
Confidence 999999984 222222112444555555555 3567899999996542 11122222221 1111 22345555
Q ss_pred cCChhhHHhcC-------ccceEeCCCCCccchHHHHHHhhhcC-CCCCCCccHHHHHHHHHHHccCchhHHH-HHHHHH
Q 040015 317 TRDSSIAASMG-------TVAAHHLECLAFEDCSSIFMNQAFEN-RNTGISPDLETIGAEIVNKCEGLLLAVK-RMGIIL 387 (1399)
Q Consensus 317 tR~~~v~~~~~-------~~~~~~l~~L~~~~~~~lf~~~a~~~-~~~~~~~~~~~~~~~i~~~~~g~PLai~-~~~~~l 387 (1399)
|........+. ....+.+++.+.++..+++..++-.. ......++..+...+++....|.|..+. ++-.+.
T Consensus 172 ~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~ 251 (365)
T TIGR02928 172 SNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAG 251 (365)
T ss_pred ECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 55443322221 12468899999999999998886421 1112233444455667777789885443 322211
Q ss_pred --h--cC---CChHHHHHHHhhhccCCCCCcchHHHHHHHhhcCCChhhhhhhhhhccCC--CCcccchHHHHHHHH--H
Q 040015 388 --R--SR---EDKGEWYDMLNRNIWDLPHDESSILQTLGLSYHHLPPHLKQCFAYCSVFP--AGYEFDKEKLVLLWM--A 456 (1399)
Q Consensus 388 --~--~~---~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~s~fp--~~~~i~~~~li~~w~--a 456 (1399)
. .+ -+.++...+.+.. -.....-+...||.+.|..+..++..- ++..+....+...+- +
T Consensus 252 ~~a~~~~~~~it~~~v~~a~~~~----------~~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~ 321 (365)
T TIGR02928 252 EIAEREGAERVTEDHVEKAQEKI----------EKDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEVC 321 (365)
T ss_pred HHHHHcCCCCCCHHHHHHHHHHH----------HHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHH
Confidence 1 11 2233444433331 112334567799999887766654221 333456666666331 2
Q ss_pred hCCccccccchhHHHHHHHHHHHHHhccccccc
Q 040015 457 EGFVQQSNAKKKLEEVGREYFHELVSRSFFRQS 489 (1399)
Q Consensus 457 ~g~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~~ 489 (1399)
+.+ .. ....+....+++++|...|++...
T Consensus 322 ~~~-~~---~~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 322 EDI-GV---DPLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred Hhc-CC---CCCcHHHHHHHHHHHHhcCCeEEE
Confidence 211 11 112245678889999999999865
No 25
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.22 E-value=5.2e-12 Score=158.64 Aligned_cols=101 Identities=30% Similarity=0.432 Sum_probs=55.7
Q ss_pred CcccEEEecCCC--CcccC-cccCCCCCCcEEeccCC-ccccccccccCCCCCcEEEccCCCCCCCcChhhccCCCCCEE
Q 040015 587 KCLRVLSFSACR--ITALP-DSVGDLKHLRYLDLSRT-AIKQLPDSTGNLCNLQSIILLECYSLSKLPTDLGNLTGLRHL 662 (1399)
Q Consensus 587 ~~Lr~L~Ls~~~--i~~lp-~~i~~L~~L~~L~Ls~n-~i~~lP~~i~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L 662 (1399)
+.|++|-+.+|. +..++ +.|..+++|++|||++| .+.+||.+|++|.+||+|+++++ .+..+|.++++|.+|.||
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT-GISHLPSGLGNLKKLIYL 623 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCC-CccccchHHHHHHhhhee
Confidence 356666666654 44443 23555666666666654 35566666666666666666665 555666666666666666
Q ss_pred EccCCcc-cccCccccCCCCCCccCce
Q 040015 663 RMSGSRL-REMPMKMYKLKNLQTLSHF 688 (1399)
Q Consensus 663 ~l~~~~l-~~lp~~i~~L~~L~~L~~~ 688 (1399)
++..+.. ..+|..+..|.+|++|..+
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~ 650 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLRLP 650 (889)
T ss_pred ccccccccccccchhhhcccccEEEee
Confidence 6665542 2222223335555555543
No 26
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.22 E-value=2.7e-13 Score=126.82 Aligned_cols=126 Identities=29% Similarity=0.363 Sum_probs=106.4
Q ss_pred ccCccceeccCCCCCCcccccccccccccccCCCCcccEEEecCCCCcccCcccCCCCCCcEEeccCCccccccccccCC
Q 040015 553 EAECLRTFLPLDPTGEIGVSYLADRVPRDILPRLKCLRVLSFSACRITALPDSVGDLKHLRYLDLSRTAIKQLPDSTGNL 632 (1399)
Q Consensus 553 ~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~Ls~n~i~~lP~~i~~L 632 (1399)
.+.+...|.+..+.. ..+|+.+ ..+++|++|++++|+|+.+|.+|+.|++||.|+++-|.+..+|..||.+
T Consensus 31 ~~s~ITrLtLSHNKl--------~~vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~ 101 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKL--------TVVPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSF 101 (264)
T ss_pred chhhhhhhhcccCce--------eecCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCC
Confidence 344444455555432 4567665 7899999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEccCCCCC-CCcChhhccCCCCCEEEccCCcccccCccccCCCCCCccCc
Q 040015 633 CNLQSIILLECYSL-SKLPTDLGNLTGLRHLRMSGSRLREMPMKMYKLKNLQTLSH 687 (1399)
Q Consensus 633 ~~L~~L~L~~~~~~-~~lP~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~ 687 (1399)
+.|++||+.+|... ..+|..|-.++.|+-|+++.|.+.-+|+.+++|++||.|..
T Consensus 102 p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~l 157 (264)
T KOG0617|consen 102 PALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSL 157 (264)
T ss_pred chhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEee
Confidence 99999999998433 46898899999999999999999999999999999998864
No 27
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.10 E-value=5.3e-09 Score=117.44 Aligned_cols=184 Identities=18% Similarity=0.157 Sum_probs=116.3
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHHHHccCCCCCCCc--chHHHHHHHHHHh
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTILKSVTSKPADVDD--DLNLLQVCLREKL 277 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~--~~~~l~~~l~~~l 277 (1399)
.+++.|+|++|+||||+++.+++.... ..+ .++|+ +....+..+++..++..++.+...... ....+...+....
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~ 119 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQ-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQF 119 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCC-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 458899999999999999999985332 111 12333 333457778899999888765432211 1122333333322
Q ss_pred -cCcceEEEecCCcCCCcchhhhhhcccC---CCCCCcEEEEEcCChhhHHhcC----------ccceEeCCCCCccchH
Q 040015 278 -AGKKFLLVLDDVWSRRNDDWDLICSPLK---AGARGSKIIITTRDSSIAASMG----------TVAAHHLECLAFEDCS 343 (1399)
Q Consensus 278 -~~~r~LlvlDdv~~~~~~~~~~l~~~l~---~~~~gs~ilvTtR~~~v~~~~~----------~~~~~~l~~L~~~~~~ 343 (1399)
.+++.+||+||+|......++.+..... .......|++|... .....+. ....+.+++++.+|..
T Consensus 120 ~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~-~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~ 198 (269)
T TIGR03015 120 AAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQP-EFRETLQSPQLQQLRQRIIASCHLGPLDREETR 198 (269)
T ss_pred hCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCH-HHHHHHcCchhHHHHhheeeeeeCCCCCHHHHH
Confidence 6788999999998876556666543222 11222345555543 2222111 1246789999999999
Q ss_pred HHHHHhhhcCCCCCCCccHHHHHHHHHHHccCchhHHHHHHHHH
Q 040015 344 SIFMNQAFENRNTGISPDLETIGAEIVNKCEGLLLAVKRMGIIL 387 (1399)
Q Consensus 344 ~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l 387 (1399)
+++...+...+......-..+..+.|++.++|.|..|..++..+
T Consensus 199 ~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 199 EYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 99887764332211122345788999999999999999998776
No 28
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.04 E-value=7.4e-10 Score=121.97 Aligned_cols=196 Identities=21% Similarity=0.219 Sum_probs=100.2
Q ss_pred cccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHH---
Q 040015 174 VYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTT--- 250 (1399)
Q Consensus 174 ~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~--- 250 (1399)
|+||++|+++|.+++..+. .+.+.|+|+.|+|||+|++++.+.. +..-..++|+...+.... .....
T Consensus 1 F~gR~~el~~l~~~l~~~~-------~~~~~l~G~rg~GKTsLl~~~~~~~--~~~~~~~~y~~~~~~~~~-~~~~~~~~ 70 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGP-------SQHILLYGPRGSGKTSLLKEFINEL--KEKGYKVVYIDFLEESNE-SSLRSFIE 70 (234)
T ss_dssp S-S-HHHHHHHHHCHHH---------SSEEEEEESTTSSHHHHHHHHHHHC--T--EECCCHHCCTTBSHH-HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhc-------CcEEEEEcCCcCCHHHHHHHHHHHh--hhcCCcEEEEecccchhh-hHHHHHHH
Confidence 7999999999999997643 5688999999999999999999843 221113444444333322 11122
Q ss_pred -----------HHHHccCCCC-----CCCcchHHHHHHHHHHh--cCcceEEEecCCcCCC------cchhhhhhcccCC
Q 040015 251 -----------ILKSVTSKPA-----DVDDDLNLLQVCLREKL--AGKKFLLVLDDVWSRR------NDDWDLICSPLKA 306 (1399)
Q Consensus 251 -----------i~~~l~~~~~-----~~~~~~~~l~~~l~~~l--~~~r~LlvlDdv~~~~------~~~~~~l~~~l~~ 306 (1399)
+...+..... ............+.+.+ .+++++||+||+.... ..-...+...+..
T Consensus 71 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~ 150 (234)
T PF01637_consen 71 ETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDS 150 (234)
T ss_dssp HHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhh
Confidence 1111211110 01111122222233333 2446999999995533 0111122222222
Q ss_pred --CCCCcEEEEEcCChhhHHh--------cCccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCc
Q 040015 307 --GARGSKIIITTRDSSIAAS--------MGTVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGL 376 (1399)
Q Consensus 307 --~~~gs~ilvTtR~~~v~~~--------~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~ 376 (1399)
......+|++.....+... .+....+.+++|+.+++++++...+-.. ... +.-.+..++|+..+||+
T Consensus 151 ~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~--~~~-~~~~~~~~~i~~~~gG~ 227 (234)
T PF01637_consen 151 LLSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL--IKL-PFSDEDIEEIYSLTGGN 227 (234)
T ss_dssp ----TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC---------HHHHHHHHHHHTT-
T ss_pred ccccCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh--hcc-cCCHHHHHHHHHHhCCC
Confidence 1233344455444444433 2233559999999999999998865322 111 22345579999999999
Q ss_pred hhHHHH
Q 040015 377 LLAVKR 382 (1399)
Q Consensus 377 PLai~~ 382 (1399)
|..|..
T Consensus 228 P~~l~~ 233 (234)
T PF01637_consen 228 PRYLQE 233 (234)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 988764
No 29
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.00 E-value=4.4e-09 Score=120.63 Aligned_cols=278 Identities=15% Similarity=0.154 Sum_probs=153.7
Q ss_pred CccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHH
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTI 251 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 251 (1399)
.+|+|+++.++.+..++..... .......+.|+|++|+|||++|+.+++.. ...+ .++... .......+..+
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~--~~~~~~~~ll~GppG~GKT~la~~ia~~l--~~~~---~~~~~~-~~~~~~~l~~~ 96 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKK--RGEALDHVLLYGPPGLGKTTLANIIANEM--GVNI---RITSGP-ALEKPGDLAAI 96 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHh--cCCCCCcEEEECCCCccHHHHHHHHHHHh--CCCe---EEEecc-cccChHHHHHH
Confidence 5699999999999888864210 11335678899999999999999999843 2222 122211 11222223344
Q ss_pred HHHccCCCCCCCcch----HHHHHHHHHHhcCcceEEEecCCcCCCcchhhhhhcccCCCCCCcEEEEEcCChhhHHhcC
Q 040015 252 LKSVTSKPADVDDDL----NLLQVCLREKLAGKKFLLVLDDVWSRRNDDWDLICSPLKAGARGSKIIITTRDSSIAASMG 327 (1399)
Q Consensus 252 ~~~l~~~~~~~~~~~----~~l~~~l~~~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~ 327 (1399)
+..+....--.-++. ....+.+...+.+.+..+|+|+..+... +...+ .+.+-|..|+|...+...+.
T Consensus 97 l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~-----~~~~l---~~~~li~at~~~~~l~~~L~ 168 (328)
T PRK00080 97 LTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARS-----IRLDL---PPFTLIGATTRAGLLTSPLR 168 (328)
T ss_pred HHhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccc-----eeecC---CCceEEeecCCcccCCHHHH
Confidence 444332110000001 1123334445555566666666533211 01011 12455667777554433221
Q ss_pred --ccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCchhHHHHHHHHHhcCCChHHHHHHHhhhcc
Q 040015 328 --TVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLLLAVKRMGIILRSREDKGEWYDMLNRNIW 405 (1399)
Q Consensus 328 --~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~~l~~~~~ 405 (1399)
-...+++++++.++..+++.+.+..... .-..+.+..|++.|+|.|-.+..+...+. .|...... .
T Consensus 169 sRf~~~~~l~~~~~~e~~~il~~~~~~~~~----~~~~~~~~~ia~~~~G~pR~a~~~l~~~~------~~a~~~~~--~ 236 (328)
T PRK00080 169 DRFGIVQRLEFYTVEELEKIVKRSARILGV----EIDEEGALEIARRSRGTPRIANRLLRRVR------DFAQVKGD--G 236 (328)
T ss_pred HhcCeeeecCCCCHHHHHHHHHHHHHHcCC----CcCHHHHHHHHHHcCCCchHHHHHHHHHH------HHHHHcCC--C
Confidence 1246899999999999999988754322 22235688999999999965544443321 22211110 0
Q ss_pred CCCC-CcchHHHHHHHhhcCCChhhhhhhh-hhccCCCCcccchHHHHHHHHHhCCccccccchhHHHHHHHHHH-HHHh
Q 040015 406 DLPH-DESSILQTLGLSYHHLPPHLKQCFA-YCSVFPAGYEFDKEKLVLLWMAEGFVQQSNAKKKLEEVGREYFH-ELVS 482 (1399)
Q Consensus 406 ~~~~-~~~~i~~~l~~sy~~L~~~~k~cf~-~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~-~L~~ 482 (1399)
.... .-......+...|..|++..+..+. ....|+.+ .+..+.+.... .. ..+.+++.++ .|++
T Consensus 237 ~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l------g~------~~~~~~~~~e~~Li~ 303 (328)
T PRK00080 237 VITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL------GE------ERDTIEDVYEPYLIQ 303 (328)
T ss_pred CCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH------CC------CcchHHHHhhHHHHH
Confidence 0100 0023344556677889888887775 67777755 56666554432 11 1233444455 7999
Q ss_pred cccccccc
Q 040015 483 RSFFRQSV 490 (1399)
Q Consensus 483 ~~l~~~~~ 490 (1399)
.+|++...
T Consensus 304 ~~li~~~~ 311 (328)
T PRK00080 304 QGFIQRTP 311 (328)
T ss_pred cCCcccCC
Confidence 99998653
No 30
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.98 E-value=6.4e-09 Score=118.86 Aligned_cols=278 Identities=14% Similarity=0.091 Sum_probs=153.7
Q ss_pred CccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHH
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTI 251 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 251 (1399)
.+|||+++.++.+..++..... .......+.++|++|+|||+||+.+++.. ...+ ..+..+..... ..+...
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~--~~~~~~~~ll~Gp~G~GKT~la~~ia~~~--~~~~---~~~~~~~~~~~-~~l~~~ 75 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKM--RQEALDHLLLYGPPGLGKTTLAHIIANEM--GVNL---KITSGPALEKP-GDLAAI 75 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHh--cCCCCCeEEEECCCCCCHHHHHHHHHHHh--CCCE---EEeccchhcCc-hhHHHH
Confidence 3689999999999998864321 11235567899999999999999999843 2222 12222111111 122233
Q ss_pred HHHccCCC----CCCCcchHHHHHHHHHHhcCcceEEEecCCcCCCcchhhhhhcccCCCCCCcEEEEEcCChhhHHhcC
Q 040015 252 LKSVTSKP----ADVDDDLNLLQVCLREKLAGKKFLLVLDDVWSRRNDDWDLICSPLKAGARGSKIIITTRDSSIAASMG 327 (1399)
Q Consensus 252 ~~~l~~~~----~~~~~~~~~l~~~l~~~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~ 327 (1399)
+..+.... ++...-....++.+...+.+.+..+|+|+.++.. .|. ..+ .+.+-|..||+...+...+.
T Consensus 76 l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~--~~~---~~~---~~~~li~~t~~~~~l~~~l~ 147 (305)
T TIGR00635 76 LTNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSAR--SVR---LDL---PPFTLVGATTRAGMLTSPLR 147 (305)
T ss_pred HHhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCcccc--cee---ecC---CCeEEEEecCCccccCHHHH
Confidence 33333221 0001001123344555566666677777664321 111 111 12455667777654443321
Q ss_pred --ccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCchhHHHHHHHHHhcCCChHHHHHHHhhhcc
Q 040015 328 --TVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLLLAVKRMGIILRSREDKGEWYDMLNRNIW 405 (1399)
Q Consensus 328 --~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~~l~~~~~ 405 (1399)
....+.+++++.++..+++.+.+..... .-..+....|++.|+|.|-.+..++..+ |.........
T Consensus 148 sR~~~~~~l~~l~~~e~~~il~~~~~~~~~----~~~~~al~~ia~~~~G~pR~~~~ll~~~--------~~~a~~~~~~ 215 (305)
T TIGR00635 148 DRFGIILRLEFYTVEELAEIVSRSAGLLNV----EIEPEAALEIARRSRGTPRIANRLLRRV--------RDFAQVRGQK 215 (305)
T ss_pred hhcceEEEeCCCCHHHHHHHHHHHHHHhCC----CcCHHHHHHHHHHhCCCcchHHHHHHHH--------HHHHHHcCCC
Confidence 1246789999999999999988754322 1224567889999999997665554432 1111000000
Q ss_pred CCCC-CcchHHHHHHHhhcCCChhhhhhhh-hhccCCCCcccchHHHHHHHHHhCCccccccchhHHHHHHHHHH-HHHh
Q 040015 406 DLPH-DESSILQTLGLSYHHLPPHLKQCFA-YCSVFPAGYEFDKEKLVLLWMAEGFVQQSNAKKKLEEVGREYFH-ELVS 482 (1399)
Q Consensus 406 ~~~~-~~~~i~~~l~~sy~~L~~~~k~cf~-~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~-~L~~ 482 (1399)
.... .-......+...|..++++.+..+. .++.++.+ .+..+.+.... | .....++..++ .|++
T Consensus 216 ~it~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l---g---------~~~~~~~~~~e~~Li~ 282 (305)
T TIGR00635 216 IINRDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL---G---------EDADTIEDVYEPYLLQ 282 (305)
T ss_pred CcCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh---C---------CCcchHHHhhhHHHHH
Confidence 0000 0012233356678889988887676 55777543 45544443322 1 12234666677 6999
Q ss_pred cccccccc
Q 040015 483 RSFFRQSV 490 (1399)
Q Consensus 483 ~~l~~~~~ 490 (1399)
++|++...
T Consensus 283 ~~li~~~~ 290 (305)
T TIGR00635 283 IGFLQRTP 290 (305)
T ss_pred cCCcccCC
Confidence 99998553
No 31
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.98 E-value=3.7e-11 Score=129.50 Aligned_cols=262 Identities=16% Similarity=0.198 Sum_probs=117.8
Q ss_pred CCCcceeeecccCCcccccc-cccccCCccceeeeccchhhhhhhhhhcccccccccEEEeecCCCccc--chhhhhCCC
Q 040015 1038 HRSLTYMRICQISKLDCLVE-GYFQHFTALEELQISHLAELMTLSNKIGLRSLLSLQRLEISECPYFKE--LPEKFYELS 1114 (1399)
Q Consensus 1038 ~~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~--l~~~~~~l~ 1114 (1399)
+++++.|.+.+|..+++..- ..-..+++|+.|++..|..++...-......+++|++|+++.|+.++. +.....++.
T Consensus 163 CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~ 242 (483)
T KOG4341|consen 163 CPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCK 242 (483)
T ss_pred CCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccch
Confidence 34444444444444433221 122446666666666666555544433334566666666666665443 112234444
Q ss_pred CccEEEEecCCCCcccC---CCCCCCCcceEEEcCCCccccchhhhccccccCcccCCcceEEecCCCCCCccCcccc--
Q 040015 1115 TLKVLRISNCPSLVAFP---EMGLPSTLVGLEIRSCEALQFLPEKMMHESQKNKDAFLLEYLVIEGCPALVSLPRDKL-- 1189 (1399)
Q Consensus 1115 ~L~~L~ls~c~~l~~~~---~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~-- 1189 (1399)
.++.+...+|..+..-. ......-+.++++..|..+++....... ..+..|+.++.++|..+...+...+
T Consensus 243 ~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~-----~~c~~lq~l~~s~~t~~~d~~l~aLg~ 317 (483)
T KOG4341|consen 243 ELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIA-----CGCHALQVLCYSSCTDITDEVLWALGQ 317 (483)
T ss_pred hhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHh-----hhhhHhhhhcccCCCCCchHHHHHHhc
Confidence 55555555554332110 0111223344444455444433311111 1234455555555554443332211
Q ss_pred -cCCCCeEeeecCCCCCccCccccccccccceeccccCCCCCCceEeecCCCCCccc--CCCCCCCCCccceecccccCC
Q 040015 1190 -SGTLKVLEIENCGNLQSLPEQMICSSLENLKVAGCLHNLAFLDHLEIDDCPLLQSF--PEPCLPTSMLRYARISNCQNL 1266 (1399)
Q Consensus 1190 -~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~c~~l 1266 (1399)
..+|+.|-+++|..++..-.... -.+++.|+.+++..|...... -..-.
T Consensus 318 ~~~~L~~l~l~~c~~fsd~~ft~l------------~rn~~~Le~l~~e~~~~~~d~tL~sls~---------------- 369 (483)
T KOG4341|consen 318 HCHNLQVLELSGCQQFSDRGFTML------------GRNCPHLERLDLEECGLITDGTLASLSR---------------- 369 (483)
T ss_pred CCCceEEEeccccchhhhhhhhhh------------hcCChhhhhhcccccceehhhhHhhhcc----------------
Confidence 12455555555554433311110 234455555555554433221 11112
Q ss_pred ccCccccccCCCcceEeecCCCCCccCCCC------CCCCCcceEEeccCCCCCCCcccccccCCCccEEEEcCCCCccc
Q 040015 1267 KFLPNGMYILTSLQEFSIHGCSSLMSFPEG------GLPPNLISLSILDCENLKPSSEWGLHRLTCLADFSFGGCQGLVS 1340 (1399)
Q Consensus 1267 ~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~------~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~ 1340 (1399)
+++.|+.|.+++|..+++-... .-...+..+.+.+|+.+++.....+..+++|+.+++.+|+.+..
T Consensus 370 --------~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk 441 (483)
T KOG4341|consen 370 --------NCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTK 441 (483)
T ss_pred --------CCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhh
Confidence 3444444444444444332100 01235556666666666655555666666777777766666553
No 32
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.94 E-value=4.3e-11 Score=129.07 Aligned_cols=302 Identities=15% Similarity=0.143 Sum_probs=180.8
Q ss_pred cceeeecccCCccccccc-ccccCCccceeeeccchhhhhhhhhhcccccccccEEEeecCCCcccch--hhhhCCCCcc
Q 040015 1041 LTYMRICQISKLDCLVEG-YFQHFTALEELQISHLAELMTLSNKIGLRSLLSLQRLEISECPYFKELP--EKFYELSTLK 1117 (1399)
Q Consensus 1041 L~~L~l~~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~--~~~~~l~~L~ 1117 (1399)
|+.|.+.++.....-+.. +..++++++.|.+.+|..+++..-......+++|++|++..|..++... ....++++|+
T Consensus 140 lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~ 219 (483)
T KOG4341|consen 140 LKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLK 219 (483)
T ss_pred cccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHH
Confidence 444555555544433332 3467999999999999887765544444578999999999998776543 2345789999
Q ss_pred EEEEecCCCCcccCCC---CCCCCcceEEEcCCCccccchhhhccccccCcccCCcceEEecCCCCCCccCcccccCCCC
Q 040015 1118 VLRISNCPSLVAFPEM---GLPSTLVGLEIRSCEALQFLPEKMMHESQKNKDAFLLEYLVIEGCPALVSLPRDKLSGTLK 1194 (1399)
Q Consensus 1118 ~L~ls~c~~l~~~~~~---~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~ 1194 (1399)
+|+++.|+.++.-... .....++.+...+|..++.-...... ..+. -+.
T Consensus 220 ~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~-----~~~~-----------------------~i~ 271 (483)
T KOG4341|consen 220 YLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAA-----AYCL-----------------------EIL 271 (483)
T ss_pred HhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHh-----ccCh-----------------------Hhh
Confidence 9999999988762110 11122444444455333211100000 0111 244
Q ss_pred eEeeecCCCCCccCccccccccccceeccccCCCCCCceEeecCCCCCcccC--CCCCCCCCccceecccccCCccCcc-
Q 040015 1195 VLEIENCGNLQSLPEQMICSSLENLKVAGCLHNLAFLDHLEIDDCPLLQSFP--EPCLPTSMLRYARISNCQNLKFLPN- 1271 (1399)
Q Consensus 1195 ~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~c~~l~~lp~- 1271 (1399)
++++..|+.+++...... -.++..|+.|+.++|......+ .-...+++|++|-++.|+.+...-.
T Consensus 272 ~lnl~~c~~lTD~~~~~i------------~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft 339 (483)
T KOG4341|consen 272 KLNLQHCNQLTDEDLWLI------------ACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFT 339 (483)
T ss_pred ccchhhhccccchHHHHH------------hhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhh
Confidence 444555555554432111 2345566666666665543322 2223456777777777776554311
Q ss_pred -ccccCCCcceEeecCCCCCccCC---CCCCCCCcceEEeccCCCCCCCcccccc----cCCCccEEEEcCCCCccccC-
Q 040015 1272 -GMYILTSLQEFSIHGCSSLMSFP---EGGLPPNLISLSILDCENLKPSSEWGLH----RLTCLADFSFGGCQGLVSFP- 1342 (1399)
Q Consensus 1272 -~~~~l~~L~~L~l~~c~~l~~l~---~~~~~~~L~~L~l~~c~~l~~~~~~~l~----~l~~L~~L~l~~~~~~~~~~- 1342 (1399)
--.+.+.|+.+++..|..+..-. .....+.|+.|.++.|..+++.....+. ....|..+.+++|+.+..-.
T Consensus 340 ~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~L 419 (483)
T KOG4341|consen 340 MLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATL 419 (483)
T ss_pred hhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHH
Confidence 11367888888888886554331 1224578999999999888755333333 35678999999998876433
Q ss_pred CCCCCCCCcceEEcCCCCCCCccc--cccCCCCCcCceeccC
Q 040015 1343 KGWFLPKNLSSLYLERLPNLKSLP--NGLKNLKYLETLEIWE 1382 (1399)
Q Consensus 1343 ~~~~~l~~L~~L~l~~~~~l~~l~--~~~~~l~~L~~L~l~~ 1382 (1399)
+....+++|+.+++.+|.....=+ ..-.++++++......
T Consensus 420 e~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~~a 461 (483)
T KOG4341|consen 420 EHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAYFA 461 (483)
T ss_pred HHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhhcc
Confidence 234677899999999998776644 3445677777665543
No 33
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.90 E-value=3.3e-10 Score=131.45 Aligned_cols=141 Identities=16% Similarity=0.050 Sum_probs=68.1
Q ss_pred cCCCCCCceEeecCCCCCcc----cCCCCCCCCCccceecccccCC----ccCccccccCCCcceEeecCCCCCccCCCC
Q 040015 1225 LHNLAFLDHLEIDDCPLLQS----FPEPCLPTSMLRYARISNCQNL----KFLPNGMYILTSLQEFSIHGCSSLMSFPEG 1296 (1399)
Q Consensus 1225 ~~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~c~~l----~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~ 1296 (1399)
+..++.|++|++++|..... ++..+..+++|+.|++++|... ..++..+..+++|+.|++++|+ ++.....
T Consensus 161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~-l~~~~~~ 239 (319)
T cd00116 161 LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN-LTDAGAA 239 (319)
T ss_pred HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc-CchHHHH
Confidence 34556666777766654321 1222233456666666665422 1223334456667777776652 2210000
Q ss_pred CCCCCcceEEeccCCCCCCCcccccccCCCccEEEEcCCCCc----cccCCCCCCCCCcceEEcCCCCCCCc----cccc
Q 040015 1297 GLPPNLISLSILDCENLKPSSEWGLHRLTCLADFSFGGCQGL----VSFPKGWFLPKNLSSLYLERLPNLKS----LPNG 1368 (1399)
Q Consensus 1297 ~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~~~~----~~~~~~~~~l~~L~~L~l~~~~~l~~----l~~~ 1368 (1399)
.+........+.|++|++++|... ..+...+..+++|+.+++++|+.-.. +...
T Consensus 240 ------------------~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~ 301 (319)
T cd00116 240 ------------------ALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAES 301 (319)
T ss_pred ------------------HHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHH
Confidence 000000112356666666665432 12223333446777777777543211 3334
Q ss_pred cCCC-CCcCceeccCCC
Q 040015 1369 LKNL-KYLETLEIWECD 1384 (1399)
Q Consensus 1369 ~~~l-~~L~~L~l~~c~ 1384 (1399)
+... ++|+.+++.+.|
T Consensus 302 ~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 302 LLEPGNELESLWVKDDS 318 (319)
T ss_pred HhhcCCchhhcccCCCC
Confidence 4444 677777777654
No 34
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.86 E-value=2e-07 Score=110.90 Aligned_cols=291 Identities=18% Similarity=0.215 Sum_probs=186.2
Q ss_pred HHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCc-cCHHHHHHHHHHHccCCC
Q 040015 181 KNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQ-FDVLRVTTTILKSVTSKP 259 (1399)
Q Consensus 181 ~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~ 259 (1399)
..++.+.|... .+.+++.|..++|.||||++.+.+. +. ..=..++|.+++.. .++...+..++..+..-.
T Consensus 24 R~rL~~~L~~~------~~~RL~li~APAGfGKttl~aq~~~--~~-~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~ 94 (894)
T COG2909 24 RPRLLDRLRRA------NDYRLILISAPAGFGKTTLLAQWRE--LA-ADGAAVAWLSLDESDNDPARFLSYLIAALQQAT 94 (894)
T ss_pred cHHHHHHHhcC------CCceEEEEeCCCCCcHHHHHHHHHH--hc-CcccceeEeecCCccCCHHHHHHHHHHHHHHhC
Confidence 34555556443 3589999999999999999999975 11 22246899998654 577788888888876433
Q ss_pred CCCC------------cchHHHHHHHHHHhc--CcceEEEecCCcCCCcchh-hhhhcccCCCCCCcEEEEEcCChhhH-
Q 040015 260 ADVD------------DDLNLLQVCLREKLA--GKKFLLVLDDVWSRRNDDW-DLICSPLKAGARGSKIIITTRDSSIA- 323 (1399)
Q Consensus 260 ~~~~------------~~~~~l~~~l~~~l~--~~r~LlvlDdv~~~~~~~~-~~l~~~l~~~~~gs~ilvTtR~~~v~- 323 (1399)
+... .....+...+...+. .++..+||||..-...... ..+...+.....+-..|||||...-.
T Consensus 95 p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~ 174 (894)
T COG2909 95 PTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLG 174 (894)
T ss_pred ccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCc
Confidence 2221 123344444444443 4578999999754332222 23333444556688999999986422
Q ss_pred --HhcCccceEeCC----CCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCchhHHHHHHHHHhcCCChHHHH
Q 040015 324 --ASMGTVAAHHLE----CLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLLLAVKRMGIILRSREDKGEWY 397 (1399)
Q Consensus 324 --~~~~~~~~~~l~----~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~ 397 (1399)
+.--....++++ .|+.+|+-++|..... .+-.+.-++.+.+..+|-+-|+..++=.++.+.+.+.-.
T Consensus 175 la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~-------l~Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~ 247 (894)
T COG2909 175 LARLRLRDELLEIGSEELRFDTEEAAAFLNDRGS-------LPLDAADLKALYDRTEGWAAALQLIALALRNNTSAEQSL 247 (894)
T ss_pred ccceeehhhHHhcChHhhcCChHHHHHHHHHcCC-------CCCChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHh
Confidence 111122334443 4788999999977541 122234578999999999999999998888443332222
Q ss_pred HHHhhhccCCCCCcchHHH-HHHHhhcCCChhhhhhhhhhccCCCCcccchHHHHHHHHHhCCccccccchhHHHHHHHH
Q 040015 398 DMLNRNIWDLPHDESSILQ-TLGLSYHHLPPHLKQCFAYCSVFPAGYEFDKEKLVLLWMAEGFVQQSNAKKKLEEVGREY 476 (1399)
Q Consensus 398 ~~l~~~~~~~~~~~~~i~~-~l~~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~ 476 (1399)
..+ ....+.+.. ...--++.||+++|.-++-+|+++.- -+.|+..- +-++.|..+
T Consensus 248 ~~L-------sG~~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~f----~~eL~~~L-------------tg~~ng~am 303 (894)
T COG2909 248 RGL-------SGAASHLSDYLVEEVLDRLPPELRDFLLQTSVLSRF----NDELCNAL-------------TGEENGQAM 303 (894)
T ss_pred hhc-------cchHHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHh----hHHHHHHH-------------hcCCcHHHH
Confidence 211 111112222 23445789999999999999999631 12333221 123457788
Q ss_pred HHHHHhcccccc-ccCCCceEEehHHHHHHHHHhhc
Q 040015 477 FHELVSRSFFRQ-SVHNSSLYVMHGLMKDLARFVSG 511 (1399)
Q Consensus 477 ~~~L~~~~l~~~-~~~~~~~~~mH~lv~~~a~~~~~ 511 (1399)
+++|.+++|+-. -+....+|+.|.+..||-+..-.
T Consensus 304 Le~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~ 339 (894)
T COG2909 304 LEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQ 339 (894)
T ss_pred HHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhc
Confidence 999999999763 44467899999999999875544
No 35
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.85 E-value=2e-07 Score=111.46 Aligned_cols=301 Identities=11% Similarity=0.061 Sum_probs=159.2
Q ss_pred CCccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccc---cccc--cceEEEEeCCccCHH
Q 040015 171 ESCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRV---DGRF--DLKVWVCVSDQFDVL 245 (1399)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~---~~~f--~~~~wv~~~~~~~~~ 245 (1399)
+..+.|||+|+++|..+|...-. +.....++.|+|++|+|||++++.|.+.... +... -.+++|.+....++.
T Consensus 754 PD~LPhREeEIeeLasfL~paIk--gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~ 831 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIK--QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPN 831 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHh--cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHH
Confidence 35689999999999999975421 1123467889999999999999999874211 1111 235778887777888
Q ss_pred HHHHHHHHHccCCCCCCCcchHHHHHHHHHHh-c--CcceEEEecCCcCCCcchhhhhhcccCC-CCCCcEEEE--EcCC
Q 040015 246 RVTTTILKSVTSKPADVDDDLNLLQVCLREKL-A--GKKFLLVLDDVWSRRNDDWDLICSPLKA-GARGSKIII--TTRD 319 (1399)
Q Consensus 246 ~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l-~--~~r~LlvlDdv~~~~~~~~~~l~~~l~~-~~~gs~ilv--TtR~ 319 (1399)
.++..|++++........-...+....+...+ . +...+||||+++.-....-+.+...+.+ ...+++|+| +|.+
T Consensus 832 sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNd 911 (1164)
T PTZ00112 832 AAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNT 911 (1164)
T ss_pred HHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCc
Confidence 89999999985544322211223333333333 2 2245899999954322121223322221 224555544 3432
Q ss_pred hh--------hHHhcCccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCchhHHHHHHHHHhcCC
Q 040015 320 SS--------IAASMGTVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLLLAVKRMGIILRSRE 391 (1399)
Q Consensus 320 ~~--------v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~ 391 (1399)
.+ +...++ ...+..+|.+.++-.+++..++-.....-.+..++-+|+.++..-|..=.||.++-.+.....
T Consensus 912 lDLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgEike 990 (1164)
T PTZ00112 912 MDLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFENKR 990 (1164)
T ss_pred hhcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhcC
Confidence 22 222222 234677999999999999998854322112223334444444444555566666654443221
Q ss_pred ----ChHHHHHHHhhhccCCCCCcchHHHHHHHhhcCCChhhhhhhhhhccCCC---CcccchHHHHHHH--HHh--C-C
Q 040015 392 ----DKGEWYDMLNRNIWDLPHDESSILQTLGLSYHHLPPHLKQCFAYCSVFPA---GYEFDKEKLVLLW--MAE--G-F 459 (1399)
Q Consensus 392 ----~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~s~fp~---~~~i~~~~li~~w--~a~--g-~ 459 (1399)
..++-.++.+.. -...+.-....||.|.|..+..+...-+ ...+....+.... +++ | .
T Consensus 991 gskVT~eHVrkAleei----------E~srI~e~IktLPlHqKLVLlALIlLlk~tg~~~i~TGEVYerYk~Lce~~Gk~ 1060 (1164)
T PTZ00112 991 GQKIVPRDITEATNQL----------FDSPLTNAINYLPWPFKMFLTCLIVELRMLNDFIIPYKKVLNRYKVLVETSGKY 1060 (1164)
T ss_pred CCccCHHHHHHHHHHH----------HhhhHHHHHHcCCHHHHHHHHHHHHHHhhcCCCceeHHHHHHHHHHHHHhhhhh
Confidence 111222222111 0112233446789887766554332211 1134444443322 222 1 1
Q ss_pred ccccccchhHHHHHHHHHHHHHhcccccc
Q 040015 460 VQQSNAKKKLEEVGREYFHELVSRSFFRQ 488 (1399)
Q Consensus 460 i~~~~~~~~~~~~~~~~~~~L~~~~l~~~ 488 (1399)
+.. ....+ ...+|+.+|...|+|-.
T Consensus 1061 iGv---~plTq-RV~d~L~eL~~LGIIl~ 1085 (1164)
T PTZ00112 1061 IGM---CSNNE-LFKIMLDKLVKMGILLI 1085 (1164)
T ss_pred cCC---CCcHH-HHHHHHHHHHhcCeEEe
Confidence 111 11122 56677777777777654
No 36
>PF05729 NACHT: NACHT domain
Probab=98.82 E-value=1.1e-08 Score=105.53 Aligned_cols=142 Identities=20% Similarity=0.220 Sum_probs=87.9
Q ss_pred EEEEEEcCCCchHHHHHHHHhcCcccccc----ccceEEEEeCCccCHH---HHHHHHHHHccCCCCCCCcchHHHHHHH
Q 040015 201 SVVPIVGMGGIGKTTVAQLVYNDSRVDGR----FDLKVWVCVSDQFDVL---RVTTTILKSVTSKPADVDDDLNLLQVCL 273 (1399)
Q Consensus 201 ~vv~I~G~gG~GKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~l~~~l 273 (1399)
|++.|+|.+|+||||+++.++........ +...+|+......... .+...+..+..... ..... .+
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~----~~~~~---~~ 73 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI----APIEE---LL 73 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch----hhhHH---HH
Confidence 58899999999999999999875322222 4566677765544332 33333333332211 11111 12
Q ss_pred HHH-hcCcceEEEecCCcCCCcc-------hhhhhhc-ccCC-CCCCcEEEEEcCChhh---HHhcCccceEeCCCCCcc
Q 040015 274 REK-LAGKKFLLVLDDVWSRRND-------DWDLICS-PLKA-GARGSKIIITTRDSSI---AASMGTVAAHHLECLAFE 340 (1399)
Q Consensus 274 ~~~-l~~~r~LlvlDdv~~~~~~-------~~~~l~~-~l~~-~~~gs~ilvTtR~~~v---~~~~~~~~~~~l~~L~~~ 340 (1399)
... .+.++++||+|++++.... .+..+.. .+.. ...+.+|+||+|.... .........+++.+|+++
T Consensus 74 ~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~ 153 (166)
T PF05729_consen 74 QELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEE 153 (166)
T ss_pred HHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHH
Confidence 222 2578999999999664321 1222222 2222 2568999999998766 333445568999999999
Q ss_pred chHHHHHHh
Q 040015 341 DCSSIFMNQ 349 (1399)
Q Consensus 341 ~~~~lf~~~ 349 (1399)
+..+++.+.
T Consensus 154 ~~~~~~~~~ 162 (166)
T PF05729_consen 154 DIKQYLRKY 162 (166)
T ss_pred HHHHHHHHH
Confidence 999988764
No 37
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.77 E-value=1.6e-07 Score=119.39 Aligned_cols=310 Identities=15% Similarity=0.174 Sum_probs=183.1
Q ss_pred ccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceE---EEEeCCcc---CHHH
Q 040015 173 CVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKV---WVCVSDQF---DVLR 246 (1399)
Q Consensus 173 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~---wv~~~~~~---~~~~ 246 (1399)
.++||+.+++.|...+..-. .+...++.+.|..|+|||+++++|... +.+.+...+ +-...... ...+
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~----~g~~~~~lv~G~sGIGKsalv~ev~~~--i~~~~~~~i~~~f~q~~~~ipl~~lvq 74 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVS----KGRGEVVLVAGESGIGKSALVNEVHKP--ITQQRGYFIKGKFDQFERNIPLSPLVQ 74 (849)
T ss_pred CCCchHhHHHHHHHHHHHHh----CCCeEEEEEeecCCCcHHHHHHHHHHH--HhccceeeeHhhcccccCCCchHHHHH
Confidence 37899999999999997653 345679999999999999999999973 322211111 11111111 1234
Q ss_pred HHHHHHHHccCCC-------------------CCC--------------------Cc-chH-----HHHHHHHHHh-cCc
Q 040015 247 VTTTILKSVTSKP-------------------ADV--------------------DD-DLN-----LLQVCLREKL-AGK 280 (1399)
Q Consensus 247 ~~~~i~~~l~~~~-------------------~~~--------------------~~-~~~-----~l~~~l~~~l-~~~ 280 (1399)
.+++++.++.... ... .. ..+ ..+..+.... +.+
T Consensus 75 ~~r~l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~ 154 (849)
T COG3899 75 AFRDLMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEH 154 (849)
T ss_pred HHHHHHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccC
Confidence 4555555442111 000 00 000 1222333333 355
Q ss_pred ceEEEecCCcCCCcchhhhhhcccCCCC----CCcEEE--EEcCCh--hhHHhcCccceEeCCCCCccchHHHHHHhhhc
Q 040015 281 KFLLVLDDVWSRRNDDWDLICSPLKAGA----RGSKII--ITTRDS--SIAASMGTVAAHHLECLAFEDCSSIFMNQAFE 352 (1399)
Q Consensus 281 r~LlvlDdv~~~~~~~~~~l~~~l~~~~----~gs~il--vTtR~~--~v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~ 352 (1399)
+.++|+||+...+....+-+...+.... .-..|. .|.+.. .+-........+.|.||+..+...+.......
T Consensus 155 plVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~ 234 (849)
T COG3899 155 PLVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGC 234 (849)
T ss_pred CeEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCC
Confidence 9999999996555444444333322221 111233 333322 12222234478999999999999999876632
Q ss_pred CCCCCCCccHHHHHHHHHHHccCchhHHHHHHHHHhcC------CChHHHHHHHhhhccCCCCCcchHHHHHHHhhcCCC
Q 040015 353 NRNTGISPDLETIGAEIVNKCEGLLLAVKRMGIILRSR------EDKGEWYDMLNRNIWDLPHDESSILQTLGLSYHHLP 426 (1399)
Q Consensus 353 ~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~------~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~ 426 (1399)
. .....+....|++|..|+|+.+..+-..+..+ .+...|..-..+. ...+.. +.+...+..-.+.||
T Consensus 235 ~-----~~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i-~~~~~~-~~vv~~l~~rl~kL~ 307 (849)
T COG3899 235 T-----KLLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASL-GILATT-DAVVEFLAARLQKLP 307 (849)
T ss_pred c-----ccccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhc-CCchhh-HHHHHHHHHHHhcCC
Confidence 2 22334568899999999999999999888764 2344444333221 111222 236667999999999
Q ss_pred hhhhhhhhhhccCCCCcccchHHHHHHHHHhCCccccccchhHHHHHHHHHHHHHhccccccc-----cCCCceE---Ee
Q 040015 427 PHLKQCFAYCSVFPAGYEFDKEKLVLLWMAEGFVQQSNAKKKLEEVGREYFHELVSRSFFRQS-----VHNSSLY---VM 498 (1399)
Q Consensus 427 ~~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~~-----~~~~~~~---~m 498 (1399)
...|+.+-..||+ |-.|+.+.|...|- .....++....+.|....++-.. ....... ..
T Consensus 308 ~~t~~Vl~~AA~i--G~~F~l~~La~l~~-----------~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~ 374 (849)
T COG3899 308 GTTREVLKAAACI--GNRFDLDTLAALAE-----------DSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFL 374 (849)
T ss_pred HHHHHHHHHHHHh--CccCCHHHHHHHHh-----------hchHHHHHHHHHHhHhhceeccccccccccccchhhHHhh
Confidence 9999999999999 45667777766552 13445566666666655554321 1111122 46
Q ss_pred hHHHHHHHHH
Q 040015 499 HGLMKDLARF 508 (1399)
Q Consensus 499 H~lv~~~a~~ 508 (1399)
||.|++.|-.
T Consensus 375 H~~vqqaaY~ 384 (849)
T COG3899 375 HDRVQQAAYN 384 (849)
T ss_pred HHHHHHHHhc
Confidence 8888887753
No 38
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.77 E-value=6.6e-09 Score=104.23 Aligned_cols=131 Identities=30% Similarity=0.367 Sum_probs=56.6
Q ss_pred ccccCccceeccCCCCCCcccccccccccccccCCCCcccEEEecCCCCcccCcccCCCCCCcEEeccCCccccccccc-
Q 040015 551 FNEAECLRTFLPLDPTGEIGVSYLADRVPRDILPRLKCLRVLSFSACRITALPDSVGDLKHLRYLDLSRTAIKQLPDST- 629 (1399)
Q Consensus 551 ~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~Ls~n~i~~lP~~i- 629 (1399)
+.+..++|.|.+.++.+ ..+ +..-..+.+|++|||++|.|+.++ .+..+++|++|++++|.|+.+++.+
T Consensus 15 ~~n~~~~~~L~L~~n~I--------~~I-e~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~ 84 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQI--------STI-ENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLD 84 (175)
T ss_dssp ------------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHH
T ss_pred ccccccccccccccccc--------ccc-cchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchH
Confidence 34455677888777653 122 222125788999999999999885 5888999999999999999997666
Q ss_pred cCCCCCcEEEccCCCCCCCcC--hhhccCCCCCEEEccCCcccccCcc----ccCCCCCCccCceeeCC
Q 040015 630 GNLCNLQSIILLECYSLSKLP--TDLGNLTGLRHLRMSGSRLREMPMK----MYKLKNLQTLSHFVVGK 692 (1399)
Q Consensus 630 ~~L~~L~~L~L~~~~~~~~lP--~~i~~L~~L~~L~l~~~~l~~lp~~----i~~L~~L~~L~~~~~~~ 692 (1399)
..+++|++|++++| .+..+- ..+..+++|++|++.+|.+...+.- +..+++|+.|+...+..
T Consensus 85 ~~lp~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V~~ 152 (175)
T PF14580_consen 85 KNLPNLQELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDVTE 152 (175)
T ss_dssp HH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEETTS
T ss_pred HhCCcCCEEECcCC-cCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEccH
Confidence 46899999999998 554442 3477899999999999998765432 67889999998766543
No 39
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.65 E-value=1.3e-07 Score=106.16 Aligned_cols=54 Identities=22% Similarity=0.438 Sum_probs=25.6
Q ss_pred CCccceecccccCCccCccccccCCCcceEeecCCCCC-ccCCCCCCCCCcceEEeccC
Q 040015 1253 SMLRYARISNCQNLKFLPNGMYILTSLQEFSIHGCSSL-MSFPEGGLPPNLISLSILDC 1310 (1399)
Q Consensus 1253 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l-~~l~~~~~~~~L~~L~l~~c 1310 (1399)
++|++|++++|..+. +|..+ ..+|+.|+++.+... ..++...+++++ .|.+.+|
T Consensus 156 sSLk~L~Is~c~~i~-LP~~L--P~SLk~L~ls~n~~~sLeI~~~sLP~nl-~L~f~n~ 210 (426)
T PRK15386 156 PSLKTLSLTGCSNII-LPEKL--PESLQSITLHIEQKTTWNISFEGFPDGL-DIDLQNS 210 (426)
T ss_pred CcccEEEecCCCccc-Ccccc--cccCcEEEecccccccccCccccccccc-Eechhhh
Confidence 346666666555432 23222 146666666553211 123333455555 5666555
No 40
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.64 E-value=4.9e-09 Score=121.57 Aligned_cols=88 Identities=26% Similarity=0.311 Sum_probs=49.8
Q ss_pred cCCCCcccEEEecCCCCc-----ccCcccCCCCCCcEEeccCCcccc-------ccccccCCCCCcEEEccCCCCCCCcC
Q 040015 583 LPRLKCLRVLSFSACRIT-----ALPDSVGDLKHLRYLDLSRTAIKQ-------LPDSTGNLCNLQSIILLECYSLSKLP 650 (1399)
Q Consensus 583 ~~~l~~Lr~L~Ls~~~i~-----~lp~~i~~L~~L~~L~Ls~n~i~~-------lP~~i~~L~~L~~L~L~~~~~~~~lP 650 (1399)
|..+..|++|+++++.++ .++..+...+.|++|+++++.+.. ++..+.++.+|++|++++|......+
T Consensus 19 ~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 98 (319)
T cd00116 19 LPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGC 98 (319)
T ss_pred HHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHH
Confidence 445555666666666652 244455555666666666655442 23445556666666666664433444
Q ss_pred hhhccCCC---CCEEEccCCccc
Q 040015 651 TDLGNLTG---LRHLRMSGSRLR 670 (1399)
Q Consensus 651 ~~i~~L~~---L~~L~l~~~~l~ 670 (1399)
..+..+.+ |++|++++|.+.
T Consensus 99 ~~~~~l~~~~~L~~L~ls~~~~~ 121 (319)
T cd00116 99 GVLESLLRSSSLQELKLNNNGLG 121 (319)
T ss_pred HHHHHHhccCcccEEEeeCCccc
Confidence 44544444 666666666554
No 41
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.61 E-value=1.4e-06 Score=95.20 Aligned_cols=174 Identities=20% Similarity=0.246 Sum_probs=105.9
Q ss_pred CCCccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHH
Q 040015 170 DESCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTT 249 (1399)
Q Consensus 170 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 249 (1399)
...+++|-+..+.+++ .. +.+..+.+||++|+||||||+.++. .....| ..++...+-.+-++
T Consensus 28 GQ~HLlg~~~~lrr~v---~~-------~~l~SmIl~GPPG~GKTTlA~liA~--~~~~~f-----~~~sAv~~gvkdlr 90 (436)
T COG2256 28 GQEHLLGEGKPLRRAV---EA-------GHLHSMILWGPPGTGKTTLARLIAG--TTNAAF-----EALSAVTSGVKDLR 90 (436)
T ss_pred ChHhhhCCCchHHHHH---hc-------CCCceeEEECCCCCCHHHHHHHHHH--hhCCce-----EEeccccccHHHHH
Confidence 3445555555554443 22 3477888999999999999999998 333444 33343333222222
Q ss_pred HHHHHccCCCCCCCcchHHHHHHH-HHHhcCcceEEEecCCcCCCcchhhhhhcccCCCCCCcEEEE--EcCChhhH---
Q 040015 250 TILKSVTSKPADVDDDLNLLQVCL-REKLAGKKFLLVLDDVWSRRNDDWDLICSPLKAGARGSKIII--TTRDSSIA--- 323 (1399)
Q Consensus 250 ~i~~~l~~~~~~~~~~~~~l~~~l-~~~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv--TtR~~~v~--- 323 (1399)
++++ .- +....++|++|++|.|..-+..+.+.+... -.+|.-|+| ||.++...
T Consensus 91 ~i~e------------------~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~---vE~G~iilIGATTENPsF~ln~ 149 (436)
T COG2256 91 EIIE------------------EARKNRLLGRRTILFLDEIHRFNKAQQDALLPH---VENGTIILIGATTENPSFELNP 149 (436)
T ss_pred HHHH------------------HHHHHHhcCCceEEEEehhhhcChhhhhhhhhh---hcCCeEEEEeccCCCCCeeecH
Confidence 2222 22 223358999999999977665555555433 345766665 67765432
Q ss_pred HhcCccceEeCCCCCccchHHHHHHhhhcCCCC--CCCc-cHHHHHHHHHHHccCchhHHH
Q 040015 324 ASMGTVAAHHLECLAFEDCSSIFMNQAFENRNT--GISP-DLETIGAEIVNKCEGLLLAVK 381 (1399)
Q Consensus 324 ~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~--~~~~-~~~~~~~~i~~~~~g~PLai~ 381 (1399)
...+...++++++|+.+|-.+++.+.+...... .... -.++...-+++.++|---++-
T Consensus 150 ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aL 210 (436)
T COG2256 150 ALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRAL 210 (436)
T ss_pred HHhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHH
Confidence 223455899999999999999998844322211 1111 223456778888888765543
No 42
>PRK06893 DNA replication initiation factor; Validated
Probab=98.58 E-value=4.1e-07 Score=98.09 Aligned_cols=156 Identities=15% Similarity=0.181 Sum_probs=98.0
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHHHHccCCCCCCCcchHHHHHHHHHHhcC
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTILKSVTSKPADVDDDLNLLQVCLREKLAG 279 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~ 279 (1399)
.+.+.|+|++|+|||+||+.+++.. ......+.|+.+.... ... . .+.+.+.
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~--~~~~~~~~y~~~~~~~---~~~------------------~----~~~~~~~- 90 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHY--LLNQRTAIYIPLSKSQ---YFS------------------P----AVLENLE- 90 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH--HHcCCCeEEeeHHHhh---hhh------------------H----HHHhhcc-
Confidence 4678999999999999999999842 2223355677653210 000 0 1111122
Q ss_pred cceEEEecCCcCCC-cchhhh-hhcccCCC-CCCcEEEE-EcCC---------hhhHHhcCccceEeCCCCCccchHHHH
Q 040015 280 KKFLLVLDDVWSRR-NDDWDL-ICSPLKAG-ARGSKIII-TTRD---------SSIAASMGTVAAHHLECLAFEDCSSIF 346 (1399)
Q Consensus 280 ~r~LlvlDdv~~~~-~~~~~~-l~~~l~~~-~~gs~ilv-TtR~---------~~v~~~~~~~~~~~l~~L~~~~~~~lf 346 (1399)
+.-+||+||+|... ...|+. +...+... ..|..||| |++. +++...+.....++++++++++.++++
T Consensus 91 ~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL 170 (229)
T PRK06893 91 QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVL 170 (229)
T ss_pred cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHH
Confidence 23589999998743 245653 33333221 23555654 4443 456666666678999999999999999
Q ss_pred HHhhhcCCCCCCCccHHHHHHHHHHHccCchhHHHHHHHHH
Q 040015 347 MNQAFENRNTGISPDLETIGAEIVNKCEGLLLAVKRMGIIL 387 (1399)
Q Consensus 347 ~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l 387 (1399)
.+.++...- .--+++..-|++++.|..-++..+-..+
T Consensus 171 ~~~a~~~~l----~l~~~v~~~L~~~~~~d~r~l~~~l~~l 207 (229)
T PRK06893 171 QRNAYQRGI----ELSDEVANFLLKRLDRDMHTLFDALDLL 207 (229)
T ss_pred HHHHHHcCC----CCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 999875432 2234567889999998876665544433
No 43
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.56 E-value=1.3e-06 Score=103.44 Aligned_cols=178 Identities=19% Similarity=0.238 Sum_probs=106.2
Q ss_pred CccccchhHHHH---HHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHH
Q 040015 172 SCVYGRENDKNA---IVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVT 248 (1399)
Q Consensus 172 ~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 248 (1399)
.++||++..+.. +..++... ....+.++|++|+||||+|+.+++. ....| +.++.......-
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~-------~~~~ilL~GppGtGKTtLA~~ia~~--~~~~~-----~~l~a~~~~~~~- 76 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAG-------RLSSMILWGPPGTGKTTLARIIAGA--TDAPF-----EALSAVTSGVKD- 76 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcC-------CCceEEEECCCCCCHHHHHHHHHHH--hCCCE-----EEEecccccHHH-
Confidence 357888877655 77777543 2557888999999999999999884 22222 222221111111
Q ss_pred HHHHHHccCCCCCCCcchHHHHHHHHHH-hcCcceEEEecCCcCCCcchhhhhhcccCCCCCCcEEEE--EcCChh--hH
Q 040015 249 TTILKSVTSKPADVDDDLNLLQVCLREK-LAGKKFLLVLDDVWSRRNDDWDLICSPLKAGARGSKIII--TTRDSS--IA 323 (1399)
Q Consensus 249 ~~i~~~l~~~~~~~~~~~~~l~~~l~~~-l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv--TtR~~~--v~ 323 (1399)
...+....... ..+++.+|++|+++.-.....+.+...+.. |..++| ||.+.. +.
T Consensus 77 -----------------ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI~att~n~~~~l~ 136 (413)
T PRK13342 77 -----------------LREVIEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLIGATTENPSFEVN 136 (413)
T ss_pred -----------------HHHHHHHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEEEeCCCChhhhcc
Confidence 11222222211 246788999999987655556666554432 444444 344432 11
Q ss_pred -HhcCccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCchhHHHHHHH
Q 040015 324 -ASMGTVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLLLAVKRMGI 385 (1399)
Q Consensus 324 -~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~ 385 (1399)
........+.+.+++.++.+.++.+.+..... ...+-..+..+.|++.|+|.+..+..+..
T Consensus 137 ~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~-~~i~i~~~al~~l~~~s~Gd~R~aln~Le 198 (413)
T PRK13342 137 PALLSRAQVFELKPLSEEDIEQLLKRALEDKER-GLVELDDEALDALARLANGDARRALNLLE 198 (413)
T ss_pred HHHhccceeeEeCCCCHHHHHHHHHHHHHHhhc-CCCCCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 11223368999999999999999886532111 11122345678899999999977654443
No 44
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.54 E-value=5.4e-08 Score=97.76 Aligned_cols=102 Identities=26% Similarity=0.394 Sum_probs=36.5
Q ss_pred cCCCCcccEEEecCCCCcccCcccC-CCCCCcEEeccCCccccccccccCCCCCcEEEccCCCCCCCcChhhc-cCCCCC
Q 040015 583 LPRLKCLRVLSFSACRITALPDSVG-DLKHLRYLDLSRTAIKQLPDSTGNLCNLQSIILLECYSLSKLPTDLG-NLTGLR 660 (1399)
Q Consensus 583 ~~~l~~Lr~L~Ls~~~i~~lp~~i~-~L~~L~~L~Ls~n~i~~lP~~i~~L~~L~~L~L~~~~~~~~lP~~i~-~L~~L~ 660 (1399)
+.+..++|.|+|++|.|+.+. .++ .+.+|+.|+|++|.|+.++ .+..|++|++|++++| .+..++..+. .+++|+
T Consensus 15 ~~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNN-RISSISEGLDKNLPNLQ 91 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHHHH-TT--
T ss_pred ccccccccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCC-CCCccccchHHhCCcCC
Confidence 345667999999999999884 565 6899999999999999996 5889999999999999 7788876664 699999
Q ss_pred EEEccCCcccccCc--cccCCCCCCccCc
Q 040015 661 HLRMSGSRLREMPM--KMYKLKNLQTLSH 687 (1399)
Q Consensus 661 ~L~l~~~~l~~lp~--~i~~L~~L~~L~~ 687 (1399)
+|++++|.|..+.. .+..+++|+.|+.
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L 120 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSL 120 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeec
Confidence 99999999876632 1344555555543
No 45
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.54 E-value=3.9e-09 Score=118.34 Aligned_cols=108 Identities=28% Similarity=0.501 Sum_probs=92.8
Q ss_pred cccccccCCCCcccEEEecCCCCcccCcccCCCCCCcEEeccCCccccccccccCCCCCcEEEccCCCCCCCcChhhccC
Q 040015 577 RVPRDILPRLKCLRVLSFSACRITALPDSVGDLKHLRYLDLSRTAIKQLPDSTGNLCNLQSIILLECYSLSKLPTDLGNL 656 (1399)
Q Consensus 577 ~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~Ls~n~i~~lP~~i~~L~~L~~L~L~~~~~~~~lP~~i~~L 656 (1399)
.+|..+ ..+..|..|.|..|.|..+|.++++|..|.||+|+.|++..+|..++.|+ |+.|.+++| .++.+|..++.+
T Consensus 89 elp~~~-~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNN-kl~~lp~~ig~~ 165 (722)
T KOG0532|consen 89 ELPEEA-CAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNN-KLTSLPEEIGLL 165 (722)
T ss_pred cCchHH-HHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecC-ccccCCcccccc
Confidence 455553 56778888889999999999999999999999999999999999888887 899999888 888899999988
Q ss_pred CCCCEEEccCCcccccCccccCCCCCCccCc
Q 040015 657 TGLRHLRMSGSRLREMPMKMYKLKNLQTLSH 687 (1399)
Q Consensus 657 ~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~ 687 (1399)
..|.+||.+.|.+..+|..++.+.+|+.|..
T Consensus 166 ~tl~~ld~s~nei~slpsql~~l~slr~l~v 196 (722)
T KOG0532|consen 166 PTLAHLDVSKNEIQSLPSQLGYLTSLRDLNV 196 (722)
T ss_pred hhHHHhhhhhhhhhhchHHhhhHHHHHHHHH
Confidence 9999999999999999988888888887754
No 46
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.50 E-value=3.8e-07 Score=102.62 Aligned_cols=157 Identities=24% Similarity=0.428 Sum_probs=98.7
Q ss_pred CCCCeEeeecCCCCCccCccccccccccceeccccCCCCCCceEeecCCCCCcccCCCCCCCCCccceecccccCCccCc
Q 040015 1191 GTLKVLEIENCGNLQSLPEQMICSSLENLKVAGCLHNLAFLDHLEIDDCPLLQSFPEPCLPTSMLRYARISNCQNLKFLP 1270 (1399)
Q Consensus 1191 ~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp 1270 (1399)
..++.|++++| .++++| . -.++|++|.+++|..+..+|..+ .++|+.|++++|..+..+|
T Consensus 52 ~~l~~L~Is~c-~L~sLP-~----------------LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP 111 (426)
T PRK15386 52 RASGRLYIKDC-DIESLP-V----------------LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP 111 (426)
T ss_pred cCCCEEEeCCC-CCcccC-C----------------CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc
Confidence 47888888887 677765 2 12468888888888888877644 3589999999988787776
Q ss_pred cccccCCCcceEeecCCCCCccCCCCCCCCCcceEEeccCCCCCCCcccccc-cC-CCccEEEEcCCCCccccCCCCCCC
Q 040015 1271 NGMYILTSLQEFSIHGCSSLMSFPEGGLPPNLISLSILDCENLKPSSEWGLH-RL-TCLADFSFGGCQGLVSFPKGWFLP 1348 (1399)
Q Consensus 1271 ~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~~~~l~-~l-~~L~~L~l~~~~~~~~~~~~~~~l 1348 (1399)
. +|+.|++++ ..+..++. +|++|+.|.+.+++.... ..+. .+ ++|++|++++|..+. +|. ..+
T Consensus 112 ~------sLe~L~L~~-n~~~~L~~--LPssLk~L~I~~~n~~~~---~~lp~~LPsSLk~L~Is~c~~i~-LP~--~LP 176 (426)
T PRK15386 112 E------SVRSLEIKG-SATDSIKN--VPNGLTSLSINSYNPENQ---ARIDNLISPSLKTLSLTGCSNII-LPE--KLP 176 (426)
T ss_pred c------ccceEEeCC-CCCccccc--CcchHhheeccccccccc---cccccccCCcccEEEecCCCccc-Ccc--ccc
Confidence 4 466777753 44444442 667888888754332111 1111 12 589999999887553 443 245
Q ss_pred CCcceEEcCCCCCCC-ccc-cccCCCCCcCceeccCCCC
Q 040015 1349 KNLSSLYLERLPNLK-SLP-NGLKNLKYLETLEIWECDN 1385 (1399)
Q Consensus 1349 ~~L~~L~l~~~~~l~-~l~-~~~~~l~~L~~L~l~~c~~ 1385 (1399)
.+|+.|+++.+.... .++ ..+. +++ .|++.+|-.
T Consensus 177 ~SLk~L~ls~n~~~sLeI~~~sLP--~nl-~L~f~n~lk 212 (426)
T PRK15386 177 ESLQSITLHIEQKTTWNISFEGFP--DGL-DIDLQNSVL 212 (426)
T ss_pred ccCcEEEecccccccccCcccccc--ccc-Eechhhhcc
Confidence 789999988753111 122 2222 445 677777743
No 47
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.49 E-value=9.3e-08 Score=114.06 Aligned_cols=103 Identities=36% Similarity=0.513 Sum_probs=92.1
Q ss_pred CCCCcccEEEecCCCCcccCcccCCCC-CCcEEeccCCccccccccccCCCCCcEEEccCCCCCCCcChhhccCCCCCEE
Q 040015 584 PRLKCLRVLSFSACRITALPDSVGDLK-HLRYLDLSRTAIKQLPDSTGNLCNLQSIILLECYSLSKLPTDLGNLTGLRHL 662 (1399)
Q Consensus 584 ~~l~~Lr~L~Ls~~~i~~lp~~i~~L~-~L~~L~Ls~n~i~~lP~~i~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L 662 (1399)
..++.+..|++.+|.++.+|...+.+. +|++|++++|.+..+|..++.+++|+.|++++| .+..+|...+.+++|+.|
T Consensus 113 ~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~~L 191 (394)
T COG4886 113 LELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNNL 191 (394)
T ss_pred hcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCc-hhhhhhhhhhhhhhhhhe
Confidence 345789999999999999998888885 999999999999999989999999999999999 889999888899999999
Q ss_pred EccCCcccccCccccCCCCCCccCc
Q 040015 663 RMSGSRLREMPMKMYKLKNLQTLSH 687 (1399)
Q Consensus 663 ~l~~~~l~~lp~~i~~L~~L~~L~~ 687 (1399)
++++|.+..+|..++.+..|++|..
T Consensus 192 ~ls~N~i~~l~~~~~~~~~L~~l~~ 216 (394)
T COG4886 192 DLSGNKISDLPPEIELLSALEELDL 216 (394)
T ss_pred eccCCccccCchhhhhhhhhhhhhh
Confidence 9999999999987766677777764
No 48
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.47 E-value=3.2e-07 Score=101.06 Aligned_cols=292 Identities=19% Similarity=0.194 Sum_probs=189.5
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhcCccccccc-cceEEEEeCCccCHHHHHHHHHHHccCCCCCCCcchHHHHHHHHHHh
Q 040015 199 NVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRF-DLKVWVCVSDQFDVLRVTTTILKSVTSKPADVDDDLNLLQVCLREKL 277 (1399)
Q Consensus 199 ~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l 277 (1399)
..+.+.++|.|||||||++-.+.. ++.-| +.+.++......+...+.-.....++........ ....+....
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g~~----~~~~~~~~~ 85 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQPGDS----AVDTLVRRI 85 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhcccccccchH----HHHHHHHHH
Confidence 368999999999999999998887 45566 5566777777777777777777777765443322 333455667
Q ss_pred cCcceEEEecCCcCCCcchhhhhhcccCCCCCCcEEEEEcCChhhHHhcCccceEeCCCCCcc-chHHHHHHhhhcCCCC
Q 040015 278 AGKKFLLVLDDVWSRRNDDWDLICSPLKAGARGSKIIITTRDSSIAASMGTVAAHHLECLAFE-DCSSIFMNQAFENRNT 356 (1399)
Q Consensus 278 ~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~~~~~~~l~~L~~~-~~~~lf~~~a~~~~~~ 356 (1399)
.++|.++|+||-..- .+.-..+...+..+...-.|+.|+|.... +.......+.+|+.. ++.++|...+......
T Consensus 86 ~~rr~llvldncehl-~~~~a~~i~all~~~~~~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~ 161 (414)
T COG3903 86 GDRRALLVLDNCEHL-LDACAALIVALLGACPRLAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVCRAVLVALS 161 (414)
T ss_pred hhhhHHHHhcCcHHH-HHHHHHHHHHHHccchhhhhHHHhHhhhc---ccccccccCCccccCCchhHHHHHHHHHhccc
Confidence 789999999997321 12223344444455566678999997533 234567788888764 7889988776543221
Q ss_pred -CCCccHHHHHHHHHHHccCchhHHHHHHHHHhcCCChHHHHHHHhhhc---cC----CCCCcchHHHHHHHhhcCCChh
Q 040015 357 -GISPDLETIGAEIVNKCEGLLLAVKRMGIILRSREDKGEWYDMLNRNI---WD----LPHDESSILQTLGLSYHHLPPH 428 (1399)
Q Consensus 357 -~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~~l~~~~---~~----~~~~~~~i~~~l~~sy~~L~~~ 428 (1399)
.........+.+|.++.+|.|++|...++..+.- ...+-..-+.... ++ .........+.+.+||.-|...
T Consensus 162 f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl-~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgw 240 (414)
T COG3903 162 FWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSL-SPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGW 240 (414)
T ss_pred eeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhc-CHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhH
Confidence 1223345678999999999999999999888765 2222222222111 01 1112245778999999999999
Q ss_pred hhhhhhhhccCCCCcccchHHHHHHHHHhCCccccccchhHHHHHHHHHHHHHhccccccccC-CCceEEehHHHHHHHH
Q 040015 429 LKQCFAYCSVFPAGYEFDKEKLVLLWMAEGFVQQSNAKKKLEEVGREYFHELVSRSFFRQSVH-NSSLYVMHGLMKDLAR 507 (1399)
Q Consensus 429 ~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~-~~~~~~mH~lv~~~a~ 507 (1399)
.+-.|--++.|..++... ...|.+-|=.-. .+.-.....+..+++.+++..... +...|+.-+-+|.|+.
T Consensus 241 e~~~~~rLa~~~g~f~~~----l~~~~a~g~~~~-----~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~Yal 311 (414)
T COG3903 241 ERALFGRLAVFVGGFDLG----LALAVAAGADVD-----VPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYAL 311 (414)
T ss_pred HHHHhcchhhhhhhhccc----HHHHHhcCCccc-----cchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 999999999998777654 334544442210 112233445667888888765432 3345666666677766
Q ss_pred Hhhc
Q 040015 508 FVSG 511 (1399)
Q Consensus 508 ~~~~ 511 (1399)
.+-.
T Consensus 312 aeL~ 315 (414)
T COG3903 312 AELH 315 (414)
T ss_pred HHHH
Confidence 5543
No 49
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.45 E-value=2.5e-08 Score=102.58 Aligned_cols=124 Identities=22% Similarity=0.248 Sum_probs=92.1
Q ss_pred ccCccceeccCCCCCCcccccccccccccccCCCCcccEEEecCCCCcccCcccCCCCCCcEEeccCCccccccccccCC
Q 040015 553 EAECLRTFLPLDPTGEIGVSYLADRVPRDILPRLKCLRVLSFSACRITALPDSVGDLKHLRYLDLSRTAIKQLPDSTGNL 632 (1399)
Q Consensus 553 ~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~Ls~n~i~~lP~~i~~L 632 (1399)
-.++|.++.+..|.+ ..+.++ ..-.+.+|+|++|+|.|..+-. +..|.+|+.||||+|.+.++-..-.+|
T Consensus 282 TWq~LtelDLS~N~I--------~~iDES-vKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KL 351 (490)
T KOG1259|consen 282 TWQELTELDLSGNLI--------TQIDES-VKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKL 351 (490)
T ss_pred hHhhhhhccccccch--------hhhhhh-hhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhh
Confidence 445666777766543 223222 3556788888888888887744 778888888888888888887777788
Q ss_pred CCCcEEEccCCCCCCCcChhhccCCCCCEEEccCCcccccC--ccccCCCCCCccCce
Q 040015 633 CNLQSIILLECYSLSKLPTDLGNLTGLRHLRMSGSRLREMP--MKMYKLKNLQTLSHF 688 (1399)
Q Consensus 633 ~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~l~~lp--~~i~~L~~L~~L~~~ 688 (1399)
-|.++|.|++| .++.+ .++++|-+|..||+++|+|..+. .+||+|+.|+++...
T Consensus 352 GNIKtL~La~N-~iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~ 407 (490)
T KOG1259|consen 352 GNIKTLKLAQN-KIETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLT 407 (490)
T ss_pred cCEeeeehhhh-hHhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhc
Confidence 88888888888 67766 46888888889999888887654 348888888877653
No 50
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.41 E-value=2.5e-06 Score=92.84 Aligned_cols=171 Identities=13% Similarity=0.133 Sum_probs=101.9
Q ss_pred chhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHHHHcc
Q 040015 177 RENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTILKSVT 256 (1399)
Q Consensus 177 r~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 256 (1399)
.+..++.+..++... ..+.+.|+|..|+|||++|+.+++... ......++++++.-... .
T Consensus 22 ~~~~~~~l~~~~~~~-------~~~~lll~G~~G~GKT~la~~~~~~~~--~~~~~~~~i~~~~~~~~------~----- 81 (226)
T TIGR03420 22 NAELLAALRQLAAGK-------GDRFLYLWGESGSGKSHLLQAACAAAE--ERGKSAIYLPLAELAQA------D----- 81 (226)
T ss_pred cHHHHHHHHHHHhcC-------CCCeEEEECCCCCCHHHHHHHHHHHHH--hcCCcEEEEeHHHHHHh------H-----
Confidence 455677777776432 256888999999999999999997422 22334556655432210 0
Q ss_pred CCCCCCCcchHHHHHHHHHHhcCcceEEEecCCcCCCcc-hh-hhhhcccCC-CCCCcEEEEEcCChh---------hHH
Q 040015 257 SKPADVDDDLNLLQVCLREKLAGKKFLLVLDDVWSRRND-DW-DLICSPLKA-GARGSKIIITTRDSS---------IAA 324 (1399)
Q Consensus 257 ~~~~~~~~~~~~l~~~l~~~l~~~r~LlvlDdv~~~~~~-~~-~~l~~~l~~-~~~gs~ilvTtR~~~---------v~~ 324 (1399)
.. +.+.+.+ .-+||+||++..... .| +.+...+.. ...+.+||+||+... +..
T Consensus 82 ----------~~----~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~ 146 (226)
T TIGR03420 82 ----------PE----VLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRT 146 (226)
T ss_pred ----------HH----HHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHH
Confidence 00 1111222 248999999654322 23 334433322 123447888887532 222
Q ss_pred hcCccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCchhHHHHHHHH
Q 040015 325 SMGTVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLLLAVKRMGII 386 (1399)
Q Consensus 325 ~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~ 386 (1399)
.+.....+++.++++++-..++.+.+-.... +--.+..+.|++.+.|.|..+.-+...
T Consensus 147 r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~----~~~~~~l~~L~~~~~gn~r~L~~~l~~ 204 (226)
T TIGR03420 147 RLAWGLVFQLPPLSDEEKIAALQSRAARRGL----QLPDEVADYLLRHGSRDMGSLMALLDA 204 (226)
T ss_pred HHhcCeeEecCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 2223467999999999989988776532221 122355678888899999877766443
No 51
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.38 E-value=1.7e-05 Score=97.77 Aligned_cols=204 Identities=21% Similarity=0.164 Sum_probs=123.3
Q ss_pred CccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccc---cceEEEEeCCc---cCHH
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRF---DLKVWVCVSDQ---FDVL 245 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f---~~~~wv~~~~~---~~~~ 245 (1399)
++++|++..+..+.+.+.... ...+.|+|++|+||||+|+.+++.......+ ...-|+.+... .+..
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~~-------~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~ 226 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASPF-------PQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPR 226 (615)
T ss_pred HhceeCcHHHHHHHHHHhcCC-------CCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHH
Confidence 358999999999888875332 4578999999999999999998754333332 12345544321 1222
Q ss_pred HHHHH---------------HHHHccCCC----------------CCCCcchHHHHHHHHHHhcCcceEEEecCCcCCCc
Q 040015 246 RVTTT---------------ILKSVTSKP----------------ADVDDDLNLLQVCLREKLAGKKFLLVLDDVWSRRN 294 (1399)
Q Consensus 246 ~~~~~---------------i~~~l~~~~----------------~~~~~~~~~l~~~l~~~l~~~r~LlvlDdv~~~~~ 294 (1399)
.+... .+...+... ++...-....+..+.+.+.++++.++-|+.|..+.
T Consensus 227 ~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~ 306 (615)
T TIGR02903 227 EVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDP 306 (615)
T ss_pred HHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCc
Confidence 22111 111111100 11111123467788888999999999888887777
Q ss_pred chhhhhhcccCCCCCCcEEEE--EcCChhh-HHhc-CccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHH
Q 040015 295 DDWDLICSPLKAGARGSKIII--TTRDSSI-AASM-GTVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIV 370 (1399)
Q Consensus 295 ~~~~~l~~~l~~~~~gs~ilv--TtR~~~v-~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~ 370 (1399)
..|+.+...+....+...|++ ||++... ...+ .....+.+.+++.+|.+.++.+.+-.... .. ..++.+.|+
T Consensus 307 ~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v-~l---s~eal~~L~ 382 (615)
T TIGR02903 307 NVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINV-HL---AAGVEELIA 382 (615)
T ss_pred ccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHH
Confidence 788888777766655555555 6665432 2111 22346788999999999999987643211 11 134455565
Q ss_pred HHccCchhHHHHHHHH
Q 040015 371 NKCEGLLLAVKRMGII 386 (1399)
Q Consensus 371 ~~~~g~PLai~~~~~~ 386 (1399)
+.+..-+-|+..++.+
T Consensus 383 ~ys~~gRraln~L~~~ 398 (615)
T TIGR02903 383 RYTIEGRKAVNILADV 398 (615)
T ss_pred HCCCcHHHHHHHHHHH
Confidence 6555446666655544
No 52
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.38 E-value=3.4e-07 Score=75.27 Aligned_cols=57 Identities=33% Similarity=0.482 Sum_probs=42.3
Q ss_pred CcccEEEecCCCCcccC-cccCCCCCCcEEeccCCccccccc-cccCCCCCcEEEccCC
Q 040015 587 KCLRVLSFSACRITALP-DSVGDLKHLRYLDLSRTAIKQLPD-STGNLCNLQSIILLEC 643 (1399)
Q Consensus 587 ~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~Ls~n~i~~lP~-~i~~L~~L~~L~L~~~ 643 (1399)
++|++|++++|.++.+| ..|.++++|++|++++|.|..+|+ .|.++++|++|++++|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 45777888888777774 567777788888888777777754 6677777777777776
No 53
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.38 E-value=6.4e-07 Score=87.94 Aligned_cols=118 Identities=17% Similarity=0.213 Sum_probs=80.0
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhcCcccc---ccccceEEEEeCCccCHHHHHHHHHHHccCCCCCCCcchHHHHHHHHH
Q 040015 199 NVSVVPIVGMGGIGKTTVAQLVYNDSRVD---GRFDLKVWVCVSDQFDVLRVTTTILKSVTSKPADVDDDLNLLQVCLRE 275 (1399)
Q Consensus 199 ~~~vv~I~G~gG~GKTtLa~~v~~~~~~~---~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~ 275 (1399)
+.+++.|+|.+|+|||++++.+++..... ..-..++|+.+....+...+...++.+++....... +.+++...+.+
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~-~~~~l~~~~~~ 81 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQ-TSDELRSLLID 81 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS--HHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccC-CHHHHHHHHHH
Confidence 35789999999999999999999842110 003456799998888999999999999998766523 36777788888
Q ss_pred HhcCcc-eEEEecCCcCC-CcchhhhhhcccCCCCCCcEEEEEcCC
Q 040015 276 KLAGKK-FLLVLDDVWSR-RNDDWDLICSPLKAGARGSKIIITTRD 319 (1399)
Q Consensus 276 ~l~~~r-~LlvlDdv~~~-~~~~~~~l~~~l~~~~~gs~ilvTtR~ 319 (1399)
.+...+ .+||+|++..- ....++.+..... ..+.+||++.+.
T Consensus 82 ~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 82 ALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 886554 59999999654 4344455544333 556677776664
No 54
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=8.5e-08 Score=104.71 Aligned_cols=89 Identities=16% Similarity=0.208 Sum_probs=40.1
Q ss_pred ccCCccceeeeccchhhhhhhhhhcccccccccEEEeecCCCcc-cchhhhhCCCCccEEEEecCCCCcc-cCCCCCCCC
Q 040015 1061 QHFTALEELQISHLAELMTLSNKIGLRSLLSLQRLEISECPYFK-ELPEKFYELSTLKVLRISNCPSLVA-FPEMGLPST 1138 (1399)
Q Consensus 1061 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~-~l~~~~~~l~~L~~L~ls~c~~l~~-~~~~~~~~~ 1138 (1399)
..+|+|+.|+++.|... ..........++.|+.|.|+.|.... .+...+..+|+|+.|++.+|..+.. ......+..
T Consensus 169 eqLp~Le~LNls~Nrl~-~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~ 247 (505)
T KOG3207|consen 169 EQLPSLENLNLSSNRLS-NFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQT 247 (505)
T ss_pred Hhcccchhccccccccc-CCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhH
Confidence 44555555555555322 11111112245556666666665331 1222344556666666666532221 112233455
Q ss_pred cceEEEcCCCcc
Q 040015 1139 LVGLEIRSCEAL 1150 (1399)
Q Consensus 1139 L~~L~l~~c~~l 1150 (1399)
|+.|++++++.+
T Consensus 248 L~~LdLs~N~li 259 (505)
T KOG3207|consen 248 LQELDLSNNNLI 259 (505)
T ss_pred HhhccccCCccc
Confidence 556666555444
No 55
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.32 E-value=7.9e-08 Score=99.02 Aligned_cols=102 Identities=24% Similarity=0.225 Sum_probs=88.7
Q ss_pred CCCCcccEEEecCCCCcccCcccCCCCCCcEEeccCCccccccccccCCCCCcEEEccCCCCCCCcChhhccCCCCCEEE
Q 040015 584 PRLKCLRVLSFSACRITALPDSVGDLKHLRYLDLSRTAIKQLPDSTGNLCNLQSIILLECYSLSKLPTDLGNLTGLRHLR 663 (1399)
Q Consensus 584 ~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~Ls~n~i~~lP~~i~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~ 663 (1399)
...+.|..||||+|.|+.+.++..-++.+|.|++|+|.|..+-. +..|++|+.|||++| .+.++-.+-.+|-|.+.|.
T Consensus 281 dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGN-LLAECVGWHLKLGNIKTLK 358 (490)
T ss_pred chHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccc-hhHhhhhhHhhhcCEeeee
Confidence 44688999999999999999999989999999999999998844 899999999999999 7777766677899999999
Q ss_pred ccCCcccccCccccCCCCCCccCce
Q 040015 664 MSGSRLREMPMKMYKLKNLQTLSHF 688 (1399)
Q Consensus 664 l~~~~l~~lp~~i~~L~~L~~L~~~ 688 (1399)
+++|.+..+ .++++|-+|..|+.-
T Consensus 359 La~N~iE~L-SGL~KLYSLvnLDl~ 382 (490)
T KOG1259|consen 359 LAQNKIETL-SGLRKLYSLVNLDLS 382 (490)
T ss_pred hhhhhHhhh-hhhHhhhhheecccc
Confidence 999998877 467777777777753
No 56
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.31 E-value=1e-05 Score=92.24 Aligned_cols=179 Identities=18% Similarity=0.223 Sum_probs=115.7
Q ss_pred CccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcC----ccccccccceEEEEe-CCccCHHH
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYND----SRVDGRFDLKVWVCV-SDQFDVLR 246 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~----~~~~~~f~~~~wv~~-~~~~~~~~ 246 (1399)
.+++|-+..++.+..++..+. -...+.++|+.|+||||+|+.+++. .....|.|...|... +....+++
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~------~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ 77 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNR------FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD 77 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCC------CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH
Confidence 357899999999999996543 3457789999999999999999873 123456666555442 22222222
Q ss_pred HHHHHHHHccCCCCCCCcchHHHHHHHHHHhcCcceEEEecCCcCCCcchhhhhhcccCCCCCCcEEEEEcCChhh-HHh
Q 040015 247 VTTTILKSVTSKPADVDDDLNLLQVCLREKLAGKKFLLVLDDVWSRRNDDWDLICSPLKAGARGSKIIITTRDSSI-AAS 325 (1399)
Q Consensus 247 ~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v-~~~ 325 (1399)
.+++.+.+... -..+++=++|+|+++.-....++.+...+.....++.+|++|.+.+. ...
T Consensus 78 -ir~~~~~~~~~-----------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~T 139 (313)
T PRK05564 78 -IRNIIEEVNKK-----------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDT 139 (313)
T ss_pred -HHHHHHHHhcC-----------------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHH
Confidence 22222222111 11244557777777655557888888888877788888888876542 222
Q ss_pred c-CccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCchhHHHH
Q 040015 326 M-GTVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLLLAVKR 382 (1399)
Q Consensus 326 ~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~ 382 (1399)
+ +....+++.++++++....+.+.. .. . ..+.++.++..++|.|..+..
T Consensus 140 I~SRc~~~~~~~~~~~~~~~~l~~~~-~~----~---~~~~~~~l~~~~~g~~~~a~~ 189 (313)
T PRK05564 140 IKSRCQIYKLNRLSKEEIEKFISYKY-ND----I---KEEEKKSAIAFSDGIPGKVEK 189 (313)
T ss_pred HHhhceeeeCCCcCHHHHHHHHHHHh-cC----C---CHHHHHHHHHHcCCCHHHHHH
Confidence 1 233689999999999888776543 11 1 123367889999999875543
No 57
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=2.6e-05 Score=89.16 Aligned_cols=206 Identities=20% Similarity=0.210 Sum_probs=128.1
Q ss_pred cccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHHH
Q 040015 174 VYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTILK 253 (1399)
Q Consensus 174 ~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 253 (1399)
+.+|+++++++...|...-.+ ....-+.|+|..|+|||+.++.|.+..+....=..+++|++-...++.+++..|+.
T Consensus 19 l~~Re~ei~~l~~~l~~~~~~---~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~ 95 (366)
T COG1474 19 LPHREEEINQLASFLAPALRG---ERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILN 95 (366)
T ss_pred ccccHHHHHHHHHHHHHHhcC---CCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHH
Confidence 899999999999998765411 22233889999999999999999984322211111789999999999999999999
Q ss_pred HccCCCCCCCcchHHHHHHHHHHhc--CcceEEEecCCcCCCcchhhhhhcccCCCCC-CcEE--EEEcCChhhHHhcC-
Q 040015 254 SVTSKPADVDDDLNLLQVCLREKLA--GKKFLLVLDDVWSRRNDDWDLICSPLKAGAR-GSKI--IITTRDSSIAASMG- 327 (1399)
Q Consensus 254 ~l~~~~~~~~~~~~~l~~~l~~~l~--~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~-gs~i--lvTtR~~~v~~~~~- 327 (1399)
+++........ ..+....+.+.+. ++.+++|||++..-....-+.+...+..... +++| |..+-+......+.
T Consensus 96 ~~~~~p~~g~~-~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~ 174 (366)
T COG1474 96 KLGKVPLTGDS-SLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDP 174 (366)
T ss_pred HcCCCCCCCCc-hHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhhh
Confidence 99743333333 5566666666663 5788999999955322211333333333222 4544 33444333333222
Q ss_pred ------ccceEeCCCCCccchHHHHHHhhhcCC-CCCCCccHHHHHHHHHHHccC-chhHHHHH
Q 040015 328 ------TVAAHHLECLAFEDCSSIFMNQAFENR-NTGISPDLETIGAEIVNKCEG-LLLAVKRM 383 (1399)
Q Consensus 328 ------~~~~~~l~~L~~~~~~~lf~~~a~~~~-~~~~~~~~~~~~~~i~~~~~g-~PLai~~~ 383 (1399)
....+..+|=+.++-..++..++-.+- .....+..-+.+..++..-+| -=.||..+
T Consensus 175 rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidil 238 (366)
T COG1474 175 RVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDIL 238 (366)
T ss_pred hhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHH
Confidence 123367888888888888888774332 223344444455555555554 34455444
No 58
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=2.2e-07 Score=101.51 Aligned_cols=205 Identities=14% Similarity=0.135 Sum_probs=121.8
Q ss_pred cccCCcceEEecCCCCCCccCc---ccccCCCCeEeeecCCCCCccCccccccccccceeccccCCCCCCceEeecCCCC
Q 040015 1165 KDAFLLEYLVIEGCPALVSLPR---DKLSGTLKVLEIENCGNLQSLPEQMICSSLENLKVAGCLHNLAFLDHLEIDDCPL 1241 (1399)
Q Consensus 1165 ~~~~~L~~L~l~~c~~l~~l~~---~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~~l~~L~~L~l~~~~~ 1241 (1399)
.++..|+++.+++|. ....+. ....++++.|+++. +-+........ + ...+++|+.|+|+.|..
T Consensus 118 sn~kkL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~-NL~~nw~~v~~--------i---~eqLp~Le~LNls~Nrl 184 (505)
T KOG3207|consen 118 SNLKKLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSR-NLFHNWFPVLK--------I---AEQLPSLENLNLSSNRL 184 (505)
T ss_pred hhHHhhhheeecCcc-ccccchhhhhhhCCcceeecchh-hhHHhHHHHHH--------H---HHhcccchhcccccccc
Confidence 467778888888753 222221 11123666666665 22222211000 0 46788888888888775
Q ss_pred CcccCCC-CCCCCCccceecccccCC-ccCccccccCCCcceEeecCCCCCccC-CCCCCCCCcceEEeccCCCCCCCcc
Q 040015 1242 LQSFPEP-CLPTSMLRYARISNCQNL-KFLPNGMYILTSLQEFSIHGCSSLMSF-PEGGLPPNLISLSILDCENLKPSSE 1318 (1399)
Q Consensus 1242 ~~~~~~~-~~~~~~L~~L~l~~c~~l-~~lp~~~~~l~~L~~L~l~~c~~l~~l-~~~~~~~~L~~L~l~~c~~l~~~~~ 1318 (1399)
.....+. -..+++|+.|.|+.|... +++-.....+|+|+.|+++++..+... -....+..|++|++++++.+..-..
T Consensus 185 ~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~ 264 (505)
T KOG3207|consen 185 SNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQG 264 (505)
T ss_pred cCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccc
Confidence 4333221 234678888888888643 123333446888888888886433211 1123567888888888665554434
Q ss_pred cccccCCCccEEEEcCCCCcc-ccCCC-----CCCCCCcceEEcCCCCCCCccc--cccCCCCCcCceeccCC
Q 040015 1319 WGLHRLTCLADFSFGGCQGLV-SFPKG-----WFLPKNLSSLYLERLPNLKSLP--NGLKNLKYLETLEIWEC 1383 (1399)
Q Consensus 1319 ~~l~~l~~L~~L~l~~~~~~~-~~~~~-----~~~l~~L~~L~l~~~~~l~~l~--~~~~~l~~L~~L~l~~c 1383 (1399)
.....++.|+.|+++.|..-+ .+|.. -...++|++|++++| ++...+ ..+..+++|+.|.+..+
T Consensus 265 ~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N-~I~~w~sl~~l~~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 265 YKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISEN-NIRDWRSLNHLRTLENLKHLRITLN 336 (505)
T ss_pred cccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccC-ccccccccchhhccchhhhhhcccc
Confidence 456678888888888754322 22322 256788999999995 465555 45666777777776554
No 59
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.29 E-value=4.3e-07 Score=95.57 Aligned_cols=48 Identities=23% Similarity=0.344 Sum_probs=32.8
Q ss_pred ccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCc
Q 040015 173 CVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDS 224 (1399)
Q Consensus 173 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~ 224 (1399)
.||||+++++++.+.|. .. .....+++.|+|.+|+|||+|+++++...
T Consensus 1 ~fvgR~~e~~~l~~~l~-~~---~~~~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLD-AA---QSGSPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp --TT-HHHHHHHHHTTG-GT---SS-----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH-HH---HcCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999996 22 23457899999999999999999998843
No 60
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.27 E-value=3.3e-05 Score=92.99 Aligned_cols=196 Identities=16% Similarity=0.177 Sum_probs=115.2
Q ss_pred CccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHH
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTI 251 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 251 (1399)
.++||.+..++.|..++.... -...+.++|..|+||||+|+.+.+...-...++ +..+..-...+.|
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gR------L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~-------~~PCG~C~sCr~I 82 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGR------LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVT-------SQPCGVCRACREI 82 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCC------CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCC-------CCCCcccHHHHHH
Confidence 468999999999999986542 245667999999999999998876321111100 0011111111111
Q ss_pred HHH-----ccCCCCCCCcchHHHHHHHHHH----hcCcceEEEecCCcCCCcchhhhhhcccCCCCCCcEEEEEcCChh-
Q 040015 252 LKS-----VTSKPADVDDDLNLLQVCLREK----LAGKKFLLVLDDVWSRRNDDWDLICSPLKAGARGSKIIITTRDSS- 321 (1399)
Q Consensus 252 ~~~-----l~~~~~~~~~~~~~l~~~l~~~----l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~- 321 (1399)
... +...... ...++++...+... ..++.-++|||+++.-....|+.+...+.....+.++|+||.+..
T Consensus 83 ~~G~h~DviEIDAas-~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~K 161 (830)
T PRK07003 83 DEGRFVDYVEMDAAS-NRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQK 161 (830)
T ss_pred hcCCCceEEEecccc-cccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhh
Confidence 110 0000000 01123333222221 124455889999977666678888777766556778777777643
Q ss_pred hHHhc-CccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCchh-HHHHHHH
Q 040015 322 IAASM-GTVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLLL-AVKRMGI 385 (1399)
Q Consensus 322 v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~~~ 385 (1399)
+...+ +....+.+++++.++..+.+.+.+-..+. .-..+....|++.++|..- |+..+-.
T Consensus 162 Ip~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI----~id~eAL~lIA~~A~GsmRdALsLLdQ 223 (830)
T PRK07003 162 IPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERI----AFEPQALRLLARAAQGSMRDALSLTDQ 223 (830)
T ss_pred ccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 33222 23368999999999999998887643321 1224567889999999764 5554333
No 61
>PF13173 AAA_14: AAA domain
Probab=98.27 E-value=2e-06 Score=83.40 Aligned_cols=120 Identities=23% Similarity=0.266 Sum_probs=78.6
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHHHHccCCCCCCCcchHHHHHHHHHHhcC
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTILKSVTSKPADVDDDLNLLQVCLREKLAG 279 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~ 279 (1399)
.+++.|.|+.|+||||++++++++.. .-..+++++..+........ .+ +.+.+.+....
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~-----------------~~-~~~~~~~~~~~ 60 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLAD-----------------PD-LLEYFLELIKP 60 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhh-----------------hh-hHHHHHHhhcc
Confidence 36899999999999999999997422 23456777765543211000 00 22333333444
Q ss_pred cceEEEecCCcCCCcchhhhhhcccCCCCCCcEEEEEcCChhhHHhc------CccceEeCCCCCccch
Q 040015 280 KKFLLVLDDVWSRRNDDWDLICSPLKAGARGSKIIITTRDSSIAASM------GTVAAHHLECLAFEDC 342 (1399)
Q Consensus 280 ~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~------~~~~~~~l~~L~~~~~ 342 (1399)
++.+|+||++... .+|......+.+.....+|++|+........- +....+++.||+..|.
T Consensus 61 ~~~~i~iDEiq~~--~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 61 GKKYIFIDEIQYL--PDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred CCcEEEEehhhhh--ccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 7789999999554 56777666666655667999999986665321 2335688999987663
No 62
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.27 E-value=1.9e-05 Score=91.77 Aligned_cols=194 Identities=15% Similarity=0.155 Sum_probs=111.8
Q ss_pred CccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHH
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTI 251 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 251 (1399)
.+++|.+..++.+...+..+. -...+.++|+.|+||||+|+.+++...-..... ......-...+++
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~------~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~-------~~pc~~c~~c~~~ 82 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGR------IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGIT-------SNPCRKCIICKEI 82 (363)
T ss_pred hhccChHHHHHHHHHHHHcCC------CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCCCHHHHHH
Confidence 468999999999999886543 245678999999999999999987321110000 0000000111111
Q ss_pred HHHccCCC----CCCCcchHHHHHHHHHH----hcCcceEEEecCCcCCCcchhhhhhcccCCCCCCcEEEEEcCCh-hh
Q 040015 252 LKSVTSKP----ADVDDDLNLLQVCLREK----LAGKKFLLVLDDVWSRRNDDWDLICSPLKAGARGSKIIITTRDS-SI 322 (1399)
Q Consensus 252 ~~~l~~~~----~~~~~~~~~l~~~l~~~----l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v 322 (1399)
........ .......++....+... ..+++-++|+|++..-....++.+...+.......++|++|.+. .+
T Consensus 83 ~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l 162 (363)
T PRK14961 83 EKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKI 162 (363)
T ss_pred hcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhh
Confidence 11100000 00001122222222111 12445699999997665556777777776655667777766543 33
Q ss_pred HHhc-CccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCchhHHHH
Q 040015 323 AASM-GTVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLLLAVKR 382 (1399)
Q Consensus 323 ~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~ 382 (1399)
...+ +....+++.+++.++..+.+.+.+...+. .-.++.+..|++.++|.|-.+..
T Consensus 163 ~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~----~i~~~al~~ia~~s~G~~R~al~ 219 (363)
T PRK14961 163 PKTILSRCLQFKLKIISEEKIFNFLKYILIKESI----DTDEYALKLIAYHAHGSMRDALN 219 (363)
T ss_pred hHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHH
Confidence 3322 23368999999999999888876644321 12234577899999998864433
No 63
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.26 E-value=9.9e-06 Score=94.47 Aligned_cols=197 Identities=13% Similarity=0.111 Sum_probs=109.9
Q ss_pred CccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCcccccccc-ceEEEEeCCccCHHHHHHH
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFD-LKVWVCVSDQFDVLRVTTT 250 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~ 250 (1399)
..++|++..++.+..++..+. .+.+.++|+.|+||||+|+.+++... ...+. ..+.+++++..+. ....
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~~-------~~~lll~Gp~GtGKT~la~~~~~~l~-~~~~~~~~~~i~~~~~~~~--~~~~ 84 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSPN-------LPHLLVQGPPGSGKTAAVRALARELY-GDPWENNFTEFNVADFFDQ--GKKY 84 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCCC-------CceEEEECCCCCCHHHHHHHHHHHhc-CcccccceEEechhhhhhc--chhh
Confidence 468999999999999886442 44678999999999999999987421 11121 2344444331100 0000
Q ss_pred HH------HHccCCCCCCCcchHHHHHHHHHHh-----cCcceEEEecCCcCCCcchhhhhhcccCCCCCCcEEEEEcCC
Q 040015 251 IL------KSVTSKPADVDDDLNLLQVCLREKL-----AGKKFLLVLDDVWSRRNDDWDLICSPLKAGARGSKIIITTRD 319 (1399)
Q Consensus 251 i~------~~l~~~~~~~~~~~~~l~~~l~~~l-----~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~ 319 (1399)
+. ..+...........+.....++... .+.+-+||+||+..-.......+...+......+++|+||..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~ 164 (337)
T PRK12402 85 LVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQ 164 (337)
T ss_pred hhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCC
Confidence 00 0000000000001222222222221 134458999999654333444555544444445678777754
Q ss_pred h-hhHHhc-CccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCchhHHHH
Q 040015 320 S-SIAASM-GTVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLLLAVKR 382 (1399)
Q Consensus 320 ~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~ 382 (1399)
. .+...+ .....+++.+++.++...++.+.+...+. .-..+..+.+++.++|.+-.+..
T Consensus 165 ~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~----~~~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 165 PSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGV----DYDDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred hhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHH
Confidence 3 222222 23357888999999998888887643322 12245678889999988765543
No 64
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.26 E-value=4.4e-06 Score=84.30 Aligned_cols=125 Identities=20% Similarity=0.164 Sum_probs=72.6
Q ss_pred ccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHHHH
Q 040015 175 YGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTILKS 254 (1399)
Q Consensus 175 vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 254 (1399)
+||+..++.+...+.... .+.+.|+|.+|+|||++|+++++... ..-..++++..............+...
T Consensus 1 ~~~~~~~~~i~~~~~~~~-------~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~ 71 (151)
T cd00009 1 VGQEEAIEALREALELPP-------PKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDLLEGLVVAELFGHF 71 (151)
T ss_pred CchHHHHHHHHHHHhCCC-------CCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehhhhhhhhHHHHHhhhh
Confidence 478899999999886532 46888999999999999999998432 222345666665443322211111000
Q ss_pred ccCCCCCCCcchHHHHHHHHHHhcCcceEEEecCCcCCCcc---hhhhhhcccCCC---CCCcEEEEEcCChh
Q 040015 255 VTSKPADVDDDLNLLQVCLREKLAGKKFLLVLDDVWSRRND---DWDLICSPLKAG---ARGSKIIITTRDSS 321 (1399)
Q Consensus 255 l~~~~~~~~~~~~~l~~~l~~~l~~~r~LlvlDdv~~~~~~---~~~~l~~~l~~~---~~gs~ilvTtR~~~ 321 (1399)
............++.++|+||++.-... .+..+...+... ..+..||+||....
T Consensus 72 -------------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 -------------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred -------------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0011112223456789999999753112 222222222221 35778888888653
No 65
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.25 E-value=1.4e-06 Score=93.67 Aligned_cols=91 Identities=19% Similarity=0.157 Sum_probs=62.8
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCc--cCHHHHHHHHHHHccCCCCCCCc-----chHHHHH
Q 040015 199 NVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQ--FDVLRVTTTILKSVTSKPADVDD-----DLNLLQV 271 (1399)
Q Consensus 199 ~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~-----~~~~l~~ 271 (1399)
....++|+|++|+|||||+++++++.... +|+.++|+.+.+. +++.++++.+...+-....+... -......
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 35678999999999999999999975444 8999999997776 78899999884333222211111 0112222
Q ss_pred HHHHH-hcCcceEEEecCCc
Q 040015 272 CLREK-LAGKKFLLVLDDVW 290 (1399)
Q Consensus 272 ~l~~~-l~~~r~LlvlDdv~ 290 (1399)
..... -.++++++++|++.
T Consensus 94 ~a~~~~~~G~~vll~iDei~ 113 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSIT 113 (249)
T ss_pred HHHHHHHCCCCEEEEEECHH
Confidence 22222 25899999999994
No 66
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.25 E-value=8e-07 Score=73.03 Aligned_cols=59 Identities=36% Similarity=0.548 Sum_probs=52.3
Q ss_pred CCCcEEeccCCccccccc-cccCCCCCcEEEccCCCCCCCcC-hhhccCCCCCEEEccCCcc
Q 040015 610 KHLRYLDLSRTAIKQLPD-STGNLCNLQSIILLECYSLSKLP-TDLGNLTGLRHLRMSGSRL 669 (1399)
Q Consensus 610 ~~L~~L~Ls~n~i~~lP~-~i~~L~~L~~L~L~~~~~~~~lP-~~i~~L~~L~~L~l~~~~l 669 (1399)
++|++|++++|+|..+|. .|.++++|++|++++| .+..+| ..|.++++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 479999999999999985 7899999999999998 666665 4689999999999999974
No 67
>PRK04195 replication factor C large subunit; Provisional
Probab=98.24 E-value=8.5e-05 Score=89.98 Aligned_cols=247 Identities=16% Similarity=0.160 Sum_probs=139.9
Q ss_pred CccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHH
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTI 251 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 251 (1399)
.+++|+++.++.+.+|+.... .+...+.+.|+|++|+||||+|+.+++... |+ .+-+++++.... ..+..+
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~---~g~~~~~lLL~GppG~GKTtla~ala~el~----~~-~ielnasd~r~~-~~i~~~ 84 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWL---KGKPKKALLLYGPPGVGKTSLAHALANDYG----WE-VIELNASDQRTA-DVIERV 84 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHh---cCCCCCeEEEECCCCCCHHHHHHHHHHHcC----CC-EEEEcccccccH-HHHHHH
Confidence 468999999999999997543 112267899999999999999999998431 22 233344443222 222333
Q ss_pred HHHccCCCCCCCcchHHHHHHHHHHhcCcceEEEecCCcCCCc----chhhhhhcccCCCCCCcEEEEEcCChh-hHH-h
Q 040015 252 LKSVTSKPADVDDDLNLLQVCLREKLAGKKFLLVLDDVWSRRN----DDWDLICSPLKAGARGSKIIITTRDSS-IAA-S 325 (1399)
Q Consensus 252 ~~~l~~~~~~~~~~~~~l~~~l~~~l~~~r~LlvlDdv~~~~~----~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~~-~ 325 (1399)
+....... .....++-+||+|+++.-.. ..+..+...+.. .+..||+|+.+.. ... .
T Consensus 85 i~~~~~~~---------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k~ 147 (482)
T PRK04195 85 AGEAATSG---------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSLRE 147 (482)
T ss_pred HHHhhccC---------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccchhh
Confidence 22221100 00113677999999965322 234445444432 2344666664321 111 1
Q ss_pred c-CccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCchhHHHHHHHHHhcCC---ChHHHHHHHh
Q 040015 326 M-GTVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLLLAVKRMGIILRSRE---DKGEWYDMLN 401 (1399)
Q Consensus 326 ~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~---~~~~w~~~l~ 401 (1399)
. .....+.+.+++.++....+.+.+...+.. . ..++...|++.++|..-.+......+.... +.+.-..+..
T Consensus 148 Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~-i---~~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~~ 223 (482)
T PRK04195 148 LRNACLMIEFKRLSTRSIVPVLKRICRKEGIE-C---DDEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLGR 223 (482)
T ss_pred HhccceEEEecCCCHHHHHHHHHHHHHHcCCC-C---CHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhhc
Confidence 1 233678999999999988888776543321 1 235678999999998876655444443321 2222222221
Q ss_pred hhccCCCCCcchHHHHHHHhhc-CCChhhhhhhhhhccCCCCcccchHHHHHHHHHhCCccc
Q 040015 402 RNIWDLPHDESSILQTLGLSYH-HLPPHLKQCFAYCSVFPAGYEFDKEKLVLLWMAEGFVQQ 462 (1399)
Q Consensus 402 ~~~~~~~~~~~~i~~~l~~sy~-~L~~~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~ 462 (1399)
.+....++.++..-+. .-+......+.. ..++. ..+-.|+.|.+...
T Consensus 224 ------~d~~~~if~~l~~i~~~k~~~~a~~~~~~-------~~~~~-~~i~~~l~en~~~~ 271 (482)
T PRK04195 224 ------RDREESIFDALDAVFKARNADQALEASYD-------VDEDP-DDLIEWIDENIPKE 271 (482)
T ss_pred ------CCCCCCHHHHHHHHHCCCCHHHHHHHHHc-------ccCCH-HHHHHHHHhccccc
Confidence 1222456666665554 333333332221 22333 35678999999765
No 68
>PLN03150 hypothetical protein; Provisional
Probab=98.24 E-value=1.3e-06 Score=108.65 Aligned_cols=91 Identities=26% Similarity=0.479 Sum_probs=82.5
Q ss_pred cccEEEecCCCCc-ccCcccCCCCCCcEEeccCCccc-cccccccCCCCCcEEEccCCCCCCCcChhhccCCCCCEEEcc
Q 040015 588 CLRVLSFSACRIT-ALPDSVGDLKHLRYLDLSRTAIK-QLPDSTGNLCNLQSIILLECYSLSKLPTDLGNLTGLRHLRMS 665 (1399)
Q Consensus 588 ~Lr~L~Ls~~~i~-~lp~~i~~L~~L~~L~Ls~n~i~-~lP~~i~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~ 665 (1399)
.++.|+|++|.+. .+|..|+.|++|++|+|++|.+. .+|..++.+++|++|+|++|.....+|..+++|++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4789999999998 67999999999999999999998 889999999999999999997777899999999999999999
Q ss_pred CCccc-ccCccccC
Q 040015 666 GSRLR-EMPMKMYK 678 (1399)
Q Consensus 666 ~~~l~-~lp~~i~~ 678 (1399)
+|.+. .+|..++.
T Consensus 499 ~N~l~g~iP~~l~~ 512 (623)
T PLN03150 499 GNSLSGRVPAALGG 512 (623)
T ss_pred CCcccccCChHHhh
Confidence 99977 67777654
No 69
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.23 E-value=1.6e-07 Score=105.86 Aligned_cols=108 Identities=31% Similarity=0.499 Sum_probs=93.5
Q ss_pred ccccccccCCCCcccEEEecCCCCcccCcccCCCCCCcEEeccCCccccccccccCCCCCcEEEccCCCCCCCcChhhcc
Q 040015 576 DRVPRDILPRLKCLRVLSFSACRITALPDSVGDLKHLRYLDLSRTAIKQLPDSTGNLCNLQSIILLECYSLSKLPTDLGN 655 (1399)
Q Consensus 576 ~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~Ls~n~i~~lP~~i~~L~~L~~L~L~~~~~~~~lP~~i~~ 655 (1399)
..+|..+| .--|++|-+++|+++.+|+.|+.+.+|..||.+.|.|..+|..++.|..|+.|.++.| .+..+|..+..
T Consensus 134 S~lp~~lC--~lpLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn-~l~~lp~El~~ 210 (722)
T KOG0532|consen 134 SHLPDGLC--DLPLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRN-HLEDLPEELCS 210 (722)
T ss_pred hcCChhhh--cCcceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhh-hhhhCCHHHhC
Confidence 34565553 3458999999999999999999889999999999999999999999999999999998 78888988885
Q ss_pred CCCCCEEEccCCcccccCccccCCCCCCccCc
Q 040015 656 LTGLRHLRMSGSRLREMPMKMYKLKNLQTLSH 687 (1399)
Q Consensus 656 L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~ 687 (1399)
| .|..||++.|++..+|..|.+|+.||+|.+
T Consensus 211 L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~L 241 (722)
T KOG0532|consen 211 L-PLIRLDFSCNKISYLPVDFRKMRHLQVLQL 241 (722)
T ss_pred C-ceeeeecccCceeecchhhhhhhhheeeee
Confidence 4 488999999999999999999999998875
No 70
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.22 E-value=4.4e-06 Score=99.78 Aligned_cols=198 Identities=15% Similarity=0.149 Sum_probs=114.0
Q ss_pred CccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHH
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTI 251 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 251 (1399)
.+++|-+..++.|..++.... -...+.++|++|+||||+|+.+++...-.+.+....|.|.+-. .+.......
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~------l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~-~i~~~~h~d 86 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGR------LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCL-AVRRGAHPD 86 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCC------CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhH-HHhcCCCCc
Confidence 468999999999988886543 2456689999999999999999874321122222233221100 000000000
Q ss_pred HHHccCCCCCCCcchHHHHHHHHH-HhcCcceEEEecCCcCCCcchhhhhhcccCCCCCCcEEEEEcC-ChhhHHhc-Cc
Q 040015 252 LKSVTSKPADVDDDLNLLQVCLRE-KLAGKKFLLVLDDVWSRRNDDWDLICSPLKAGARGSKIIITTR-DSSIAASM-GT 328 (1399)
Q Consensus 252 ~~~l~~~~~~~~~~~~~l~~~l~~-~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR-~~~v~~~~-~~ 328 (1399)
+..+........+.+.++...+.. -..+++-++|+|+++......++.+...+......+.+|++|. ...+...+ ..
T Consensus 87 v~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SR 166 (504)
T PRK14963 87 VLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSR 166 (504)
T ss_pred eEEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcc
Confidence 000010000001112222222221 1235566899999977655677778777765545556555554 33443322 23
Q ss_pred cceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCchhHH
Q 040015 329 VAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLLLAV 380 (1399)
Q Consensus 329 ~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 380 (1399)
...+++.+++.++....+.+.+...+. ....+....|++.++|.+--+
T Consensus 167 c~~~~f~~ls~~el~~~L~~i~~~egi----~i~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 167 TQHFRFRRLTEEEIAGKLRRLLEAEGR----EAEPEALQLVARLADGAMRDA 214 (504)
T ss_pred eEEEEecCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHH
Confidence 468999999999999999887754332 112356788999999988544
No 71
>PTZ00202 tuzin; Provisional
Probab=98.21 E-value=1.6e-05 Score=88.62 Aligned_cols=168 Identities=15% Similarity=0.170 Sum_probs=103.9
Q ss_pred CCCCccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHH
Q 040015 169 VDESCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVT 248 (1399)
Q Consensus 169 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 248 (1399)
.+...|+||++++.++...|...+ ....+++.|+|++|+|||||++.+..... + ..++++. . +..+++
T Consensus 259 a~~~~FVGReaEla~Lr~VL~~~d----~~~privvLtG~~G~GKTTLlR~~~~~l~----~-~qL~vNp-r--g~eElL 326 (550)
T PTZ00202 259 AVIRQFVSREAEESWVRQVLRRLD----TAHPRIVVFTGFRGCGKSSLCRSAVRKEG----M-PAVFVDV-R--GTEDTL 326 (550)
T ss_pred CCccCCCCcHHHHHHHHHHHhccC----CCCceEEEEECCCCCCHHHHHHHHHhcCC----c-eEEEECC-C--CHHHHH
Confidence 446689999999999999997543 12356999999999999999999997322 1 1222322 2 679999
Q ss_pred HHHHHHccCCCCCC-CcchHHHHHHHHHHh-c-CcceEEEecCCcCCC-cchhhhhhcccCCCCCCcEEEEEcCChhhHH
Q 040015 249 TTILKSVTSKPADV-DDDLNLLQVCLREKL-A-GKKFLLVLDDVWSRR-NDDWDLICSPLKAGARGSKIIITTRDSSIAA 324 (1399)
Q Consensus 249 ~~i~~~l~~~~~~~-~~~~~~l~~~l~~~l-~-~~r~LlvlDdv~~~~-~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~ 324 (1399)
+.++.+|+.+.... .+-.+.+++.+.+.- . +++.+||+-==.... ...+++.. .+.....-|.|++----+.+..
T Consensus 327 r~LL~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v-~la~drr~ch~v~evpleslt~ 405 (550)
T PTZ00202 327 RSVVKALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVV-ALACDRRLCHVVIEVPLESLTI 405 (550)
T ss_pred HHHHHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHH-HHHccchhheeeeeehHhhcch
Confidence 99999999744322 122345555554433 2 677777763221100 11222221 2334445677776444333221
Q ss_pred hc---CccceEeCCCCCccchHHHHHHh
Q 040015 325 SM---GTVAAHHLECLAFEDCSSIFMNQ 349 (1399)
Q Consensus 325 ~~---~~~~~~~l~~L~~~~~~~lf~~~ 349 (1399)
.. ..-.-|-+++++.++|.++-.+.
T Consensus 406 ~~~~lprldf~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 406 ANTLLPRLDFYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred hcccCccceeEecCCCCHHHHHHHHhhc
Confidence 11 12356889999999998877654
No 72
>PLN03025 replication factor C subunit; Provisional
Probab=98.21 E-value=1.3e-05 Score=91.51 Aligned_cols=183 Identities=13% Similarity=0.133 Sum_probs=106.0
Q ss_pred CccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCcccccccc-ceEEEEeCCccCHHHHHHH
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFD-LKVWVCVSDQFDVLRVTTT 250 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~ 250 (1399)
.+++|.++.++.|..++.... .+.+.++|++|+||||+|+.+++... ...|. .++-+..++..... ..++
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~~-------~~~lll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~eln~sd~~~~~-~vr~ 83 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDGN-------MPNLILSGPPGTGKTTSILALAHELL-GPNYKEAVLELNASDDRGID-VVRN 83 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcCC-------CceEEEECCCCCCHHHHHHHHHHHHh-cccCccceeeecccccccHH-HHHH
Confidence 458899998888888775432 44577999999999999999987421 12221 11112222222211 1222
Q ss_pred HHHHccCCCCCCCcchHHHHHHHHHHhcCcceEEEecCCcCCCcchhhhhhcccCCCCCCcEEEEEcCCh-hhHHhc-Cc
Q 040015 251 ILKSVTSKPADVDDDLNLLQVCLREKLAGKKFLLVLDDVWSRRNDDWDLICSPLKAGARGSKIIITTRDS-SIAASM-GT 328 (1399)
Q Consensus 251 i~~~l~~~~~~~~~~~~~l~~~l~~~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~~~-~~ 328 (1399)
+++.+...... .-.++.-++|+|+++.-.......+...+......+++++++... .+...+ ..
T Consensus 84 ~i~~~~~~~~~--------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SR 149 (319)
T PLN03025 84 KIKMFAQKKVT--------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSR 149 (319)
T ss_pred HHHHHHhcccc--------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHh
Confidence 22211100000 001345689999997655445555555554444567777766442 222211 12
Q ss_pred cceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCchhHHH
Q 040015 329 VAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLLLAVK 381 (1399)
Q Consensus 329 ~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 381 (1399)
...++++++++++....+...+-..+- .. ..+....|++.++|..-.+.
T Consensus 150 c~~i~f~~l~~~~l~~~L~~i~~~egi-~i---~~~~l~~i~~~~~gDlR~al 198 (319)
T PLN03025 150 CAIVRFSRLSDQEILGRLMKVVEAEKV-PY---VPEGLEAIIFTADGDMRQAL 198 (319)
T ss_pred hhcccCCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCCHHHHH
Confidence 357899999999999888877744322 11 13457888999998774443
No 73
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.20 E-value=1.7e-05 Score=84.54 Aligned_cols=158 Identities=21% Similarity=0.240 Sum_probs=99.3
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHHHHccCCCCCCCcchHHHHHHHHHHhc
Q 040015 199 NVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTILKSVTSKPADVDDDLNLLQVCLREKLA 278 (1399)
Q Consensus 199 ~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~ 278 (1399)
.+..+.+||++|+||||||+.+....+-.. ..||..|....-..-.++|.++... ...+.
T Consensus 161 ~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~aq~----------------~~~l~ 220 (554)
T KOG2028|consen 161 RIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQAQN----------------EKSLT 220 (554)
T ss_pred CCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHHHH----------------HHhhh
Confidence 477889999999999999999998644332 4567776655444444444443211 12346
Q ss_pred CcceEEEecCCcCCCcchhhhhhcccCCCCCCcEEEE--EcCChhh---HHhcCccceEeCCCCCccchHHHHHHhhh--
Q 040015 279 GKKFLLVLDDVWSRRNDDWDLICSPLKAGARGSKIII--TTRDSSI---AASMGTVAAHHLECLAFEDCSSIFMNQAF-- 351 (1399)
Q Consensus 279 ~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv--TtR~~~v---~~~~~~~~~~~l~~L~~~~~~~lf~~~a~-- 351 (1399)
++|.+|++|.|..-+..+.+.+ +|.-.+|.-++| ||.++.. +..+..-.++.+++|+.++...++.+..-
T Consensus 221 krkTilFiDEiHRFNksQQD~f---LP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l 297 (554)
T KOG2028|consen 221 KRKTILFIDEIHRFNKSQQDTF---LPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASL 297 (554)
T ss_pred cceeEEEeHHhhhhhhhhhhcc---cceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHHhh
Confidence 7899999999966543333332 444556776665 7777653 22234457899999999999888877432
Q ss_pred -cCCC---CCCCc---cHHHHHHHHHHHccCchhH
Q 040015 352 -ENRN---TGISP---DLETIGAEIVNKCEGLLLA 379 (1399)
Q Consensus 352 -~~~~---~~~~~---~~~~~~~~i~~~~~g~PLa 379 (1399)
.... +-+.+ -...+.+-++..|+|-..+
T Consensus 298 ~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~ 332 (554)
T KOG2028|consen 298 GDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARA 332 (554)
T ss_pred ccccccCCCCCCcchhhhHHHHHHHHHhcCchHHH
Confidence 1111 11111 1234566677788887643
No 74
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.19 E-value=2.8e-05 Score=92.62 Aligned_cols=195 Identities=14% Similarity=0.147 Sum_probs=114.5
Q ss_pred CccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHH
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTI 251 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 251 (1399)
.++||.+..++.|..++.... -...+.++|+.|+||||+|+.+++...-. -|+.. ..+..-...+.+
T Consensus 15 ddVIGQe~vv~~L~~aI~~gr------l~HAyLF~GPpGvGKTTlAriLAK~LnC~------~~~~~-~pCg~C~sC~~I 81 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGR------LHHAYLFTGTRGVGKTTIARILAKCLNCE------TGVTS-TPCEVCATCKAV 81 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCC------CCeEEEEECCCCCCHHHHHHHHHHHhCCC------cCCCC-CCCccCHHHHHH
Confidence 468999999999999997543 24677899999999999999998632110 01100 001111111111
Q ss_pred HHHccCCC----CCCCcchHHHHHHHHHH----hcCcceEEEecCCcCCCcchhhhhhcccCCCCCCcEEEEEcCCh-hh
Q 040015 252 LKSVTSKP----ADVDDDLNLLQVCLREK----LAGKKFLLVLDDVWSRRNDDWDLICSPLKAGARGSKIIITTRDS-SI 322 (1399)
Q Consensus 252 ~~~l~~~~----~~~~~~~~~l~~~l~~~----l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v 322 (1399)
...-.... .......+++.+.+... ..+++-++|+|++..-....++.+...+.....+.++|++|.+. .+
T Consensus 82 ~~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kI 161 (702)
T PRK14960 82 NEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKL 161 (702)
T ss_pred hcCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhh
Confidence 11000000 00001133332222211 23566689999997665566777777666555667777777653 23
Q ss_pred HHh-cCccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCchhHHHHH
Q 040015 323 AAS-MGTVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLLLAVKRM 383 (1399)
Q Consensus 323 ~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 383 (1399)
... .+....+++++++.++..+.+.+.+-..+. ....+....|++.++|.+..+..+
T Consensus 162 p~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI----~id~eAL~~IA~~S~GdLRdALnL 219 (702)
T PRK14960 162 PITVISRCLQFTLRPLAVDEITKHLGAILEKEQI----AADQDAIWQIAESAQGSLRDALSL 219 (702)
T ss_pred hHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 222 233478999999999999988877644322 122345678999999988555433
No 75
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.18 E-value=1.2e-05 Score=82.45 Aligned_cols=182 Identities=18% Similarity=0.199 Sum_probs=96.3
Q ss_pred CccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHH
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTI 251 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 251 (1399)
.+|||.+.-++.+.-++..... .......+.+||++|+||||||.-+++. ....|. +++...-....+ +..+
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~--r~~~l~h~lf~GPPG~GKTTLA~IIA~e--~~~~~~---~~sg~~i~k~~d-l~~i 95 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKK--RGEALDHMLFYGPPGLGKTTLARIIANE--LGVNFK---ITSGPAIEKAGD-LAAI 95 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHC--TTS---EEEEESSTTSSHHHHHHHHHHH--CT--EE---EEECCC--SCHH-HHHH
T ss_pred HHccCcHHHHhhhHHHHHHHHh--cCCCcceEEEECCCccchhHHHHHHHhc--cCCCeE---eccchhhhhHHH-HHHH
Confidence 5799999888887655543210 1234778899999999999999999983 444442 222211111111 1122
Q ss_pred HHHccCCCCCCCcchHHHHHHHHHHhcCcceEEEecCCcCCCcchhhhhhcccCCC--------C-----------CCcE
Q 040015 252 LKSVTSKPADVDDDLNLLQVCLREKLAGKKFLLVLDDVWSRRNDDWDLICSPLKAG--------A-----------RGSK 312 (1399)
Q Consensus 252 ~~~l~~~~~~~~~~~~~l~~~l~~~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~--------~-----------~gs~ 312 (1399)
+..+ +++.+|.+|++..-+...-+.+..++.++ + +-+-
T Consensus 96 l~~l-----------------------~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTl 152 (233)
T PF05496_consen 96 LTNL-----------------------KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTL 152 (233)
T ss_dssp HHT-------------------------TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EE
T ss_pred HHhc-----------------------CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceE
Confidence 2221 23446666777554433333333333221 1 1233
Q ss_pred EEEEcCChhhHHhcCcc--ceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCchhHHHHHHHHHh
Q 040015 313 IIITTRDSSIAASMGTV--AAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLLLAVKRMGIILR 388 (1399)
Q Consensus 313 ilvTtR~~~v~~~~~~~--~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~ 388 (1399)
|=.|||...+...+... -+.+++..+.+|-.++..+.|..-. -+-.++.+.+|++++.|-|--+.-+-..++
T Consensus 153 igATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~----i~i~~~~~~~Ia~rsrGtPRiAnrll~rvr 226 (233)
T PF05496_consen 153 IGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILN----IEIDEDAAEEIARRSRGTPRIANRLLRRVR 226 (233)
T ss_dssp EEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-----EE-HHHHHHHHHCTTTSHHHHHHHHHHHC
T ss_pred eeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhC----CCcCHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 45688876665544332 2457999999999999988764322 234467799999999999976655544443
No 76
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.14 E-value=3.4e-05 Score=94.87 Aligned_cols=195 Identities=14% Similarity=0.180 Sum_probs=114.3
Q ss_pred CccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHH
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTI 251 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 251 (1399)
.++||.+..++.|..++..+. -...+.++|+.|+||||+|+.+++...-...... ..+..-.....+
T Consensus 16 ddIIGQe~Iv~~LknaI~~~r------l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~-------~pCg~C~sC~~i 82 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQR------LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTA-------TPCGVCSSCVEI 82 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCC------CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCC-------CCCCCchHHHHH
Confidence 468999999999999986543 2345589999999999999999974211100000 000000000111
Q ss_pred HHH-------ccCCCCCCCcchHHHHHHHHH-HhcCcceEEEecCCcCCCcchhhhhhcccCCCCCCcEEEEEcCC-hhh
Q 040015 252 LKS-------VTSKPADVDDDLNLLQVCLRE-KLAGKKFLLVLDDVWSRRNDDWDLICSPLKAGARGSKIIITTRD-SSI 322 (1399)
Q Consensus 252 ~~~-------l~~~~~~~~~~~~~l~~~l~~-~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v 322 (1399)
... +........+.+.++...+.. ...+++-++|||++..-..+.++.+...+.......++|++|.+ ..+
T Consensus 83 ~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kL 162 (944)
T PRK14949 83 AQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKL 162 (944)
T ss_pred hcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhc
Confidence 100 000000001112222222221 12466779999999776667778877777655556666665544 444
Q ss_pred HHhc-CccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCchhHHHHH
Q 040015 323 AASM-GTVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLLLAVKRM 383 (1399)
Q Consensus 323 ~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 383 (1399)
...+ .....|++++++.++..+.+.+.+-..+ .....+....|++.++|.|--+..+
T Consensus 163 l~TIlSRCq~f~fkpLs~eEI~~~L~~il~~Eg----I~~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 163 PVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQ----LPFEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred hHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 4332 2347899999999999998887664321 1222356788999999999654444
No 77
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.14 E-value=1.6e-06 Score=103.39 Aligned_cols=124 Identities=31% Similarity=0.414 Sum_probs=101.6
Q ss_pred ccCccceeccCCCCCCcccccccccccccccCCCC-cccEEEecCCCCcccCcccCCCCCCcEEeccCCccccccccccC
Q 040015 553 EAECLRTFLPLDPTGEIGVSYLADRVPRDILPRLK-CLRVLSFSACRITALPDSVGDLKHLRYLDLSRTAIKQLPDSTGN 631 (1399)
Q Consensus 553 ~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~l~-~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~Ls~n~i~~lP~~i~~ 631 (1399)
....+..|.+..+.. .++++.. ..+. +|+.|++++|.+..+|..++.+++|+.|++++|.+..+|...+.
T Consensus 114 ~~~~l~~L~l~~n~i--------~~i~~~~-~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~ 184 (394)
T COG4886 114 ELTNLTSLDLDNNNI--------TDIPPLI-GLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSN 184 (394)
T ss_pred cccceeEEecCCccc--------ccCcccc-ccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhh
Confidence 345677777666542 4455433 3443 89999999999999999999999999999999999999998889
Q ss_pred CCCCcEEEccCCCCCCCcChhhccCCCCCEEEccCCcccccCccccCCCCCCccC
Q 040015 632 LCNLQSIILLECYSLSKLPTDLGNLTGLRHLRMSGSRLREMPMKMYKLKNLQTLS 686 (1399)
Q Consensus 632 L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~ 686 (1399)
+.+|+.|++++| .+..+|..++.+..|++|.+++|.+..++..+.++.++..|.
T Consensus 185 ~~~L~~L~ls~N-~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~ 238 (394)
T COG4886 185 LSNLNNLDLSGN-KISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLE 238 (394)
T ss_pred hhhhhheeccCC-ccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccc
Confidence 999999999999 899999988888889999999997666666666666666554
No 78
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.14 E-value=4.2e-05 Score=88.48 Aligned_cols=181 Identities=14% Similarity=0.126 Sum_probs=106.1
Q ss_pred CccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEe--CCccCHHHHHH
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCV--SDQFDVLRVTT 249 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~--~~~~~~~~~~~ 249 (1399)
.+++|+++.++.+..++.... .+.+.|+|..|+||||+|+.+++... ...+. ..++.+ +...... ...
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~~-------~~~~ll~G~~G~GKt~~~~~l~~~l~-~~~~~-~~~i~~~~~~~~~~~-~~~ 86 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEKN-------MPHLLFAGPPGTGKTTAALALARELY-GEDWR-ENFLELNASDERGID-VIR 86 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCCC-------CCeEEEECCCCCCHHHHHHHHHHHHc-CCccc-cceEEeccccccchH-HHH
Confidence 458999999999999996543 44579999999999999999987421 11121 122222 2211111 111
Q ss_pred HHHHHccCCCCCCCcchHHHHHHHHHHhcCcceEEEecCCcCCCcchhhhhhcccCCCCCCcEEEEEcCCh-hhHHhc-C
Q 040015 250 TILKSVTSKPADVDDDLNLLQVCLREKLAGKKFLLVLDDVWSRRNDDWDLICSPLKAGARGSKIIITTRDS-SIAASM-G 327 (1399)
Q Consensus 250 ~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~~~-~ 327 (1399)
+.+.++..... .....+-++++|++..-..+.+..+...+......+++|+++... .+.... .
T Consensus 87 ~~i~~~~~~~~---------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~s 151 (319)
T PRK00440 87 NKIKEFARTAP---------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQS 151 (319)
T ss_pred HHHHHHHhcCC---------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHH
Confidence 11111110000 001235589999986544444555655555444556777766432 221111 2
Q ss_pred ccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCchhHHH
Q 040015 328 TVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLLLAVK 381 (1399)
Q Consensus 328 ~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 381 (1399)
....+++.+++.++....+.+.+...+. .-..+....+++.++|.+.-+.
T Consensus 152 r~~~~~~~~l~~~ei~~~l~~~~~~~~~----~i~~~al~~l~~~~~gd~r~~~ 201 (319)
T PRK00440 152 RCAVFRFSPLKKEAVAERLRYIAENEGI----EITDDALEAIYYVSEGDMRKAI 201 (319)
T ss_pred HhheeeeCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHH
Confidence 2356899999999998888887654322 1224467888999999886543
No 79
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.12 E-value=3.4e-05 Score=91.64 Aligned_cols=199 Identities=16% Similarity=0.173 Sum_probs=114.4
Q ss_pred CccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHH
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTI 251 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 251 (1399)
.++||-+..++.|..++..+. -...+.++|..|+||||+|+.+.+...-... +..--+ .+..+..-...+.|
T Consensus 16 ddVIGQe~vv~~L~~al~~gR------LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p-~~~~g~-~~~PCG~C~sC~~I 87 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQR------LHHAYLFTGTRGVGKTTLSRILAKSLNCTGA-DGEGGI-TAQPCGQCRACTEI 87 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCC------CceEEEEECCCCCCHHHHHHHHHHHhcCCCc-cccccC-CCCCCcccHHHHHH
Confidence 468999999999999997553 2456789999999999999999863211000 000000 00001111111111
Q ss_pred HHH-----ccCCCCCCCcchHHHHHHHHHH----hcCcceEEEecCCcCCCcchhhhhhcccCCCCCCcEEE-EEcCChh
Q 040015 252 LKS-----VTSKPADVDDDLNLLQVCLREK----LAGKKFLLVLDDVWSRRNDDWDLICSPLKAGARGSKII-ITTRDSS 321 (1399)
Q Consensus 252 ~~~-----l~~~~~~~~~~~~~l~~~l~~~----l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~il-vTtR~~~ 321 (1399)
... +...... ...++++.+.+... ..++.-++|+|+++.-....++.+...+..-..+.++| +||....
T Consensus 88 ~aG~hpDviEIdAas-~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~k 166 (700)
T PRK12323 88 DAGRFVDYIEMDAAS-NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQK 166 (700)
T ss_pred HcCCCCcceEecccc-cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHh
Confidence 110 0000000 01133333333222 14556689999998776677888777776555566655 4555455
Q ss_pred hHHhc-CccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCchhHHHHH
Q 040015 322 IAASM-GTVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLLLAVKRM 383 (1399)
Q Consensus 322 v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 383 (1399)
+...+ +....+.++.++.++..+.+.+.+...+. ....+..+.|++.++|.|..+..+
T Consensus 167 LlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi----~~d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 167 IPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGI----AHEVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred hhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 54333 23368999999999999988876643221 112345678999999999755444
No 80
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.11 E-value=5.5e-05 Score=90.46 Aligned_cols=185 Identities=17% Similarity=0.163 Sum_probs=113.2
Q ss_pred CccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCcccc-------------------ccccc
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVD-------------------GRFDL 232 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~-------------------~~f~~ 232 (1399)
.+++|-+..++.+..++.... -...+.++|+.|+||||+|+.+++...-. +.|..
T Consensus 16 ~diiGq~~~v~~L~~~i~~~r------l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~d 89 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQK------VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFID 89 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCC------CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCc
Confidence 468999999999999996543 24567899999999999999998621100 01112
Q ss_pred eEEEEeCCccCHHHHHHHHHHHccCCCCCCCcchHHHHHHHHHH-hcCcceEEEecCCcCCCcchhhhhhcccCCCCCCc
Q 040015 233 KVWVCVSDQFDVLRVTTTILKSVTSKPADVDDDLNLLQVCLREK-LAGKKFLLVLDDVWSRRNDDWDLICSPLKAGARGS 311 (1399)
Q Consensus 233 ~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~-l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs 311 (1399)
.+++.......++ +..++...+... ..+++-++|+|++..-....++.+...+......+
T Consensus 90 lieidaas~~gvd-------------------~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v 150 (546)
T PRK14957 90 LIEIDAASRTGVE-------------------ETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYV 150 (546)
T ss_pred eEEeecccccCHH-------------------HHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCc
Confidence 2222221111111 122233222221 24566799999997666567777877776655566
Q ss_pred EEE-EEcCChhhHHhc-CccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCchh-HHHHHHH
Q 040015 312 KII-ITTRDSSIAASM-GTVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLLL-AVKRMGI 385 (1399)
Q Consensus 312 ~il-vTtR~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~~~ 385 (1399)
.+| +||....+...+ .....+++++++.++....+.+.+-..+. ....+....|++.++|.+- |+..+-.
T Consensus 151 ~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi----~~e~~Al~~Ia~~s~GdlR~alnlLek 223 (546)
T PRK14957 151 KFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENI----NSDEQSLEYIAYHAKGSLRDALSLLDQ 223 (546)
T ss_pred eEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 655 455444444332 33478999999999988877775533221 2223456789999999774 4444433
No 81
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.11 E-value=2.4e-05 Score=93.02 Aligned_cols=196 Identities=15% Similarity=0.149 Sum_probs=115.1
Q ss_pred CccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccc-eEEEEeCCccCHHHHHHH
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDL-KVWVCVSDQFDVLRVTTT 250 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~ 250 (1399)
.++||-+..++.+...+..+. -...+.++|+.|+||||+|+.+++...-...... -.+..+.. -.....
T Consensus 21 ~dliGq~~vv~~L~~ai~~~r------i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~----C~~C~~ 90 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDR------LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQ----CTNCIS 90 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCC------CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCC----ChHHHH
Confidence 468999999999888776542 2457889999999999999999873211110000 00000000 011111
Q ss_pred HHHHccCCC----CCCCcchHHHHHHHHHH----hcCcceEEEecCCcCCCcchhhhhhcccCCCCCCcEEEE-EcCChh
Q 040015 251 ILKSVTSKP----ADVDDDLNLLQVCLREK----LAGKKFLLVLDDVWSRRNDDWDLICSPLKAGARGSKIII-TTRDSS 321 (1399)
Q Consensus 251 i~~~l~~~~----~~~~~~~~~l~~~l~~~----l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv-TtR~~~ 321 (1399)
+........ .......+++...+... +.+++-++|+|+++.-....|+.+...+......+.+|+ ||+...
T Consensus 91 i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~k 170 (507)
T PRK06645 91 FNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQK 170 (507)
T ss_pred HhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHH
Confidence 111000000 00011133333333222 245677899999987666778888777766555666554 555555
Q ss_pred hHHhc-CccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCchhHHH
Q 040015 322 IAASM-GTVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLLLAVK 381 (1399)
Q Consensus 322 v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 381 (1399)
+...+ .....+++++++.++....+.+.+...+. .-..+....|++.++|.+--+.
T Consensus 171 I~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi----~ie~eAL~~Ia~~s~GslR~al 227 (507)
T PRK06645 171 IPATIISRCQRYDLRRLSFEEIFKLLEYITKQENL----KTDIEALRIIAYKSEGSARDAV 227 (507)
T ss_pred hhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHH
Confidence 55443 23367999999999999999888754332 1123456779999999885443
No 82
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.11 E-value=1.3e-05 Score=92.90 Aligned_cols=193 Identities=13% Similarity=0.094 Sum_probs=113.7
Q ss_pred CccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHH
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTI 251 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 251 (1399)
.++||.+..+..|..++.... -...+.++|+.|+||||+|+.+++...-..... ...+..... .+.+
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~r------i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~---~~pCg~C~s----C~~i 84 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGK------IGHAYIFFGPRGVGKTTIARILAKRLNCENPIG---NEPCNECTS----CLEI 84 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCC------CCeEEEEECCCCCCHHHHHHHHHHhcCcccccC---ccccCCCcH----HHHH
Confidence 468999999999999886543 234678999999999999999987321110000 000111111 1122
Q ss_pred HHHccCC-------CCCCCcchHHHHHHHHHH-hcCcceEEEecCCcCCCcchhhhhhcccCCCCCCcEEE-EEcCChhh
Q 040015 252 LKSVTSK-------PADVDDDLNLLQVCLREK-LAGKKFLLVLDDVWSRRNDDWDLICSPLKAGARGSKII-ITTRDSSI 322 (1399)
Q Consensus 252 ~~~l~~~-------~~~~~~~~~~l~~~l~~~-l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~il-vTtR~~~v 322 (1399)
....... .....+++.++.+.+... ..++.-++|+|++..-..+.++.+...+.........| .||....+
T Consensus 85 ~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI 164 (484)
T PRK14956 85 TKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKI 164 (484)
T ss_pred HccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhc
Confidence 2111110 001111133333333222 24566699999998776677888877775544455544 45554445
Q ss_pred HHhc-CccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCchhHHH
Q 040015 323 AASM-GTVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLLLAVK 381 (1399)
Q Consensus 323 ~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 381 (1399)
...+ .....|.+.+++.++..+.+.+.+-..+. .-..+....|++.++|.+.-+.
T Consensus 165 ~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi----~~e~eAL~~Ia~~S~Gd~RdAL 220 (484)
T PRK14956 165 PETILSRCQDFIFKKVPLSVLQDYSEKLCKIENV----QYDQEGLFWIAKKGDGSVRDML 220 (484)
T ss_pred cHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCChHHHHH
Confidence 4333 23367999999999988888877643321 1224567889999999985443
No 83
>PRK08727 hypothetical protein; Validated
Probab=98.10 E-value=3.9e-05 Score=82.97 Aligned_cols=148 Identities=16% Similarity=0.134 Sum_probs=89.7
Q ss_pred EEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHHHHccCCCCCCCcchHHHHHHHHHHhcCc
Q 040015 201 SVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTILKSVTSKPADVDDDLNLLQVCLREKLAGK 280 (1399)
Q Consensus 201 ~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~~ 280 (1399)
..+.|+|..|+|||.|++.+++.. ......+.|+.+.+ .... .. ..+. .+ .+
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~--~~~~~~~~y~~~~~------~~~~---------------~~---~~~~-~l-~~ 93 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAA--EQAGRSSAYLPLQA------AAGR---------------LR---DALE-AL-EG 93 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEEeHHH------hhhh---------------HH---HHHH-HH-hc
Confidence 459999999999999999998742 23333556666432 1110 00 1111 11 23
Q ss_pred ceEEEecCCcCCC-cchhhh-hhcccCC-CCCCcEEEEEcCCh---------hhHHhcCccceEeCCCCCccchHHHHHH
Q 040015 281 KFLLVLDDVWSRR-NDDWDL-ICSPLKA-GARGSKIIITTRDS---------SIAASMGTVAAHHLECLAFEDCSSIFMN 348 (1399)
Q Consensus 281 r~LlvlDdv~~~~-~~~~~~-l~~~l~~-~~~gs~ilvTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~ 348 (1399)
.-+||+||+.... ...|.. +...+.. ...|..||+|++.. ++...+.....+++++++.++-.+++.+
T Consensus 94 ~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~ 173 (233)
T PRK08727 94 RSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRE 173 (233)
T ss_pred CCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHH
Confidence 3589999995432 123432 2222211 12466799999852 2333333456899999999999999998
Q ss_pred hhhcCCCCCCCccHHHHHHHHHHHccCchhHH
Q 040015 349 QAFENRNTGISPDLETIGAEIVNKCEGLLLAV 380 (1399)
Q Consensus 349 ~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 380 (1399)
++...+- .-.+++..-|++.++|-.-++
T Consensus 174 ~a~~~~l----~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 174 RAQRRGL----ALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHHcCC----CCCHHHHHHHHHhCCCCHHHH
Confidence 7754321 223456778888888766555
No 84
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.10 E-value=5.1e-05 Score=84.62 Aligned_cols=214 Identities=13% Similarity=0.114 Sum_probs=131.0
Q ss_pred CCCccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHH
Q 040015 170 DESCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTT 249 (1399)
Q Consensus 170 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 249 (1399)
.+..++||+.|++.+..|+...- .....+.+.|.|-+|.|||.+...|+.+..-...=..++++.+-.-....+++.
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hl---e~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~ 224 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHL---ELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFK 224 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhh---hcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHH
Confidence 35679999999999999997764 234567889999999999999999998532211112457777766566778888
Q ss_pred HHHHHccCCCCCCCcchHHHHHHHHHHhcCc--ceEEEecCCcCCCcchhhhhhcccCC-CCCCcEEEEEcCCh------
Q 040015 250 TILKSVTSKPADVDDDLNLLQVCLREKLAGK--KFLLVLDDVWSRRNDDWDLICSPLKA-GARGSKIIITTRDS------ 320 (1399)
Q Consensus 250 ~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~~--r~LlvlDdv~~~~~~~~~~l~~~l~~-~~~gs~ilvTtR~~------ 320 (1399)
.|...+......... ..+.+..+.++..+. -+|+|+|.++.-....-..+...|.+ .-.++|+|+.--..
T Consensus 225 kI~~~~~q~~~s~~~-~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTd 303 (529)
T KOG2227|consen 225 KIFSSLLQDLVSPGT-GMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTD 303 (529)
T ss_pred HHHHHHHHHhcCCch-hHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHH
Confidence 888877322222222 255666777777544 58899999854322233334444433 23566665432211
Q ss_pred -hhHHh---c-CccceEeCCCCCccchHHHHHHhhhcCCCC-CCCccHHHHHHHHHHHccCchhHHHHHHHHH
Q 040015 321 -SIAAS---M-GTVAAHHLECLAFEDCSSIFMNQAFENRNT-GISPDLETIGAEIVNKCEGLLLAVKRMGIIL 387 (1399)
Q Consensus 321 -~v~~~---~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~-~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l 387 (1399)
...+. . .....+..+|-+.++-.++|..+.-..... ..+..++-.|++++.-.|.+=-|+.+.-+++
T Consensus 304 R~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~ai 376 (529)
T KOG2227|consen 304 RFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRAI 376 (529)
T ss_pred HHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 11111 1 134678889999999999999887443221 1222334444444444455555555554443
No 85
>PLN03150 hypothetical protein; Provisional
Probab=98.08 E-value=5.6e-06 Score=103.14 Aligned_cols=104 Identities=23% Similarity=0.393 Sum_probs=87.4
Q ss_pred cceeccCCCCCCcccccccccccccccCCCCcccEEEecCCCCc-ccCcccCCCCCCcEEeccCCccc-cccccccCCCC
Q 040015 557 LRTFLPLDPTGEIGVSYLADRVPRDILPRLKCLRVLSFSACRIT-ALPDSVGDLKHLRYLDLSRTAIK-QLPDSTGNLCN 634 (1399)
Q Consensus 557 Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~-~lp~~i~~L~~L~~L~Ls~n~i~-~lP~~i~~L~~ 634 (1399)
++.|.+.++. +.+.+|.. +..+++|+.|+|++|.+. .+|..++.+++|++|+|++|.+. .+|+.+++|++
T Consensus 420 v~~L~L~~n~-------L~g~ip~~-i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~ 491 (623)
T PLN03150 420 IDGLGLDNQG-------LRGFIPND-ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491 (623)
T ss_pred EEEEECCCCC-------ccccCCHH-HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCC
Confidence 4555555443 33556654 688999999999999998 77999999999999999999998 78999999999
Q ss_pred CcEEEccCCCCCCCcChhhccC-CCCCEEEccCCc
Q 040015 635 LQSIILLECYSLSKLPTDLGNL-TGLRHLRMSGSR 668 (1399)
Q Consensus 635 L~~L~L~~~~~~~~lP~~i~~L-~~L~~L~l~~~~ 668 (1399)
|++|+|++|.....+|..++.+ .++..+++.+|.
T Consensus 492 L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 492 LRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence 9999999998778999988764 577889888875
No 86
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=8.8e-08 Score=98.93 Aligned_cols=178 Identities=17% Similarity=0.183 Sum_probs=101.3
Q ss_pred CCCCeEeeecCCCCCccCccccccccccceeccccCCCCCCceEeecCCCCCcccCCCCCCCCCccceecccccCCccCc
Q 040015 1191 GTLKVLEIENCGNLQSLPEQMICSSLENLKVAGCLHNLAFLDHLEIDDCPLLQSFPEPCLPTSMLRYARISNCQNLKFLP 1270 (1399)
Q Consensus 1191 ~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp 1270 (1399)
+.|+.||+++ ..++.-.-.. -++.|..|+.|.|.++.....+-..+..-.+|+.|+|+.|+.++...
T Consensus 185 sRlq~lDLS~-s~it~stl~~------------iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~ 251 (419)
T KOG2120|consen 185 SRLQHLDLSN-SVITVSTLHG------------ILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENA 251 (419)
T ss_pred hhhHHhhcch-hheeHHHHHH------------HHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhH
Confidence 4689999987 3332111000 04456666666666666555555555555667777777777666532
Q ss_pred --cccccCCCcceEeecCCCCCccC---CCCCCCCCcceEEeccCCCC-CCCcc-cccccCCCccEEEEcCCCCccc-cC
Q 040015 1271 --NGMYILTSLQEFSIHGCSSLMSF---PEGGLPPNLISLSILDCENL-KPSSE-WGLHRLTCLADFSFGGCQGLVS-FP 1342 (1399)
Q Consensus 1271 --~~~~~l~~L~~L~l~~c~~l~~l---~~~~~~~~L~~L~l~~c~~l-~~~~~-~~l~~l~~L~~L~l~~~~~~~~-~~ 1342 (1399)
--+.+|+.|..|+++-|...+.. -.....++|+.|++++|... ..... .-...|++|.+||+++|..++. ..
T Consensus 252 ~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~ 331 (419)
T KOG2120|consen 252 LQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCF 331 (419)
T ss_pred HHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHH
Confidence 22346777777777777443322 11124467777777776532 21111 1234677777777777665542 11
Q ss_pred CCCCCCCCcceEEcCCCCCCCccc---cccCCCCCcCceeccCC
Q 040015 1343 KGWFLPKNLSSLYLERLPNLKSLP---NGLKNLKYLETLEIWEC 1383 (1399)
Q Consensus 1343 ~~~~~l~~L~~L~l~~~~~l~~l~---~~~~~l~~L~~L~l~~c 1383 (1399)
..+..++.|++|.++.|=.+ +| --+...++|.+|++.+|
T Consensus 332 ~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 332 QEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred HHHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEeccc
Confidence 23456667777777777433 22 23556677777777776
No 87
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=3e-07 Score=95.08 Aligned_cols=107 Identities=21% Similarity=0.229 Sum_probs=71.4
Q ss_pred CcceeeecccCCcccccccccccCCccceeeeccchhhhhhhhhhcccccccccEEEeecCCCcccch--hhhhCCCCcc
Q 040015 1040 SLTYMRICQISKLDCLVEGYFQHFTALEELQISHLAELMTLSNKIGLRSLLSLQRLEISECPYFKELP--EKFYELSTLK 1117 (1399)
Q Consensus 1040 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~--~~~~~l~~L~ 1117 (1399)
.|++|||+.......-..+.+..|.+|+.|.+.++..-..+..... .-.+|+.|+|+.|..++... -.+.+++.|.
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iA--kN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIA--KNSNLVRLNLSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHh--ccccceeeccccccccchhHHHHHHHhhhhHh
Confidence 3666666655533334445567788888888888875555544433 56788899999888877643 3577888899
Q ss_pred EEEEecCCCCcccCC---CCCCCCcceEEEcCCC
Q 040015 1118 VLRISNCPSLVAFPE---MGLPSTLVGLEIRSCE 1148 (1399)
Q Consensus 1118 ~L~ls~c~~l~~~~~---~~~~~~L~~L~l~~c~ 1148 (1399)
.|+|+.|...+..-. ....++|+.|++++|.
T Consensus 264 ~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~r 297 (419)
T KOG2120|consen 264 ELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYR 297 (419)
T ss_pred hcCchHhhccchhhhHHHhhhchhhhhhhhhhhH
Confidence 999998876554321 1223677777777774
No 88
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.06 E-value=2.5e-05 Score=96.97 Aligned_cols=173 Identities=18% Similarity=0.236 Sum_probs=98.6
Q ss_pred CccccchhHHH---HHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHH
Q 040015 172 SCVYGRENDKN---AIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVT 248 (1399)
Q Consensus 172 ~~~vGr~~~~~---~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 248 (1399)
.+|+|.+..+. .+..++... ....+.++|++|+||||+|+.+++. ...+|. .++... ....
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~~-------~~~slLL~GPpGtGKTTLA~aIA~~--~~~~f~---~lna~~-~~i~--- 91 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKAD-------RVGSLILYGPPGVGKTTLARIIANH--TRAHFS---SLNAVL-AGVK--- 91 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhcC-------CCceEEEECCCCCCHHHHHHHHHHH--hcCcce---eehhhh-hhhH---
Confidence 45889888774 455666433 3557789999999999999999983 334441 111110 0000
Q ss_pred HHHHHHccCCCCCCCcchHHHHHHHHHHh--cCcceEEEecCCcCCCcchhhhhhcccCCCCCCcEEEE--EcCChh--h
Q 040015 249 TTILKSVTSKPADVDDDLNLLQVCLREKL--AGKKFLLVLDDVWSRRNDDWDLICSPLKAGARGSKIII--TTRDSS--I 322 (1399)
Q Consensus 249 ~~i~~~l~~~~~~~~~~~~~l~~~l~~~l--~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv--TtR~~~--v 322 (1399)
+..+......+.+ .+++.++|+||++.-....++.+...+. .|+.++| ||.+.. +
T Consensus 92 ----------------dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l 152 (725)
T PRK13341 92 ----------------DLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEV 152 (725)
T ss_pred ----------------HHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhh
Confidence 0111112222222 2467899999997655555666554432 3555555 344431 2
Q ss_pred HHhc-CccceEeCCCCCccchHHHHHHhhhcCCC---CCCCccHHHHHHHHHHHccCchhH
Q 040015 323 AASM-GTVAAHHLECLAFEDCSSIFMNQAFENRN---TGISPDLETIGAEIVNKCEGLLLA 379 (1399)
Q Consensus 323 ~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~---~~~~~~~~~~~~~i~~~~~g~PLa 379 (1399)
.... ....++.+++++.++...++.+.+-.... .....-..+....|++.+.|..-.
T Consensus 153 ~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~ 213 (725)
T PRK13341 153 NKALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARS 213 (725)
T ss_pred hhHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHH
Confidence 2211 23467999999999999998876531000 001122245567888888886543
No 89
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.06 E-value=6.6e-05 Score=89.07 Aligned_cols=187 Identities=15% Similarity=0.145 Sum_probs=107.9
Q ss_pred CccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCcccccc-------------------ccc
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGR-------------------FDL 232 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~-------------------f~~ 232 (1399)
.++||.+..++.+...+..+. -...+.++|++|+||||+|+.+++...-... +..
T Consensus 14 ~divGq~~i~~~L~~~i~~~~------l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~d 87 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNS------ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMD 87 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCC------CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCc
Confidence 468999988888888876543 2356789999999999999999863211100 001
Q ss_pred eEEEEeCCccCHHHHHHHHHHHccCCCCCCCcchHHHHHHHHH-HhcCcceEEEecCCcCCCcchhhhhhcccCCCCCCc
Q 040015 233 KVWVCVSDQFDVLRVTTTILKSVTSKPADVDDDLNLLQVCLRE-KLAGKKFLLVLDDVWSRRNDDWDLICSPLKAGARGS 311 (1399)
Q Consensus 233 ~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~-~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs 311 (1399)
++.+..+....... +..+...+.. ...+++-++|+|+++.-.....+.+...+.......
T Consensus 88 v~el~aa~~~gid~-------------------iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~v 148 (472)
T PRK14962 88 VIELDAASNRGIDE-------------------IRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHV 148 (472)
T ss_pred cEEEeCcccCCHHH-------------------HHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcE
Confidence 11222211111111 1111111111 123456799999996544445566666665433444
Q ss_pred EEEE-EcCChhhHHhc-CccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCc-hhHHHHHHHHH
Q 040015 312 KIII-TTRDSSIAASM-GTVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGL-LLAVKRMGIIL 387 (1399)
Q Consensus 312 ~ilv-TtR~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~-PLai~~~~~~l 387 (1399)
.+|+ ||....+...+ .....+++.+++.++....+.+.+...+. .-..+....|++.++|. +.|+..+-.+.
T Consensus 149 v~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi----~i~~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 149 VFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGI----EIDREALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred EEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 4444 44334444333 23468899999999988888877643321 12235577888877654 56666665543
No 90
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.05 E-value=7e-06 Score=91.45 Aligned_cols=101 Identities=18% Similarity=0.204 Sum_probs=65.2
Q ss_pred HHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCcc--CHHHHHHHHHHHccCCCC
Q 040015 183 AIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQF--DVLRVTTTILKSVTSKPA 260 (1399)
Q Consensus 183 ~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~ 260 (1399)
++++++..- +......|+|++|+||||||+++|++.... +|+.++||.+.+.. .+.++++.+...+-....
T Consensus 158 rvID~l~PI------GkGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~ 230 (416)
T PRK09376 158 RIIDLIAPI------GKGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTF 230 (416)
T ss_pred eeeeeeccc------ccCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECC
Confidence 455555433 234567899999999999999999975544 89999999998887 677777777643322221
Q ss_pred CCCcch-----HHHHHHHHHH-hcCcceEEEecCCc
Q 040015 261 DVDDDL-----NLLQVCLREK-LAGKKFLLVLDDVW 290 (1399)
Q Consensus 261 ~~~~~~-----~~l~~~l~~~-l~~~r~LlvlDdv~ 290 (1399)
+..... ....+.-+.. ..+++++|++|++.
T Consensus 231 d~~~~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsIt 266 (416)
T PRK09376 231 DEPAERHVQVAEMVIEKAKRLVEHGKDVVILLDSIT 266 (416)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEChH
Confidence 111101 0111111111 36899999999993
No 91
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.05 E-value=3.6e-05 Score=91.83 Aligned_cols=196 Identities=13% Similarity=0.142 Sum_probs=111.3
Q ss_pred CccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHH
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTI 251 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 251 (1399)
.+++|++..++.+..++..+. -.+.+.++|+.|+||||+|+.+++... +.-|... ..+..-...+.+
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~r------l~hA~Lf~GP~GvGKTTlA~~lAk~L~------C~~~~~~-~~Cg~C~sCr~i 82 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNK------LTHAYIFSGPRGIGKTSIAKIFAKAIN------CLNPKDG-DCCNSCSVCESI 82 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCC------CCceEEEECCCCCCHHHHHHHHHHHhc------CCCCCCC-CCCcccHHHHHH
Confidence 468999999999999986543 245688999999999999999986321 1112111 111111222222
Q ss_pred HHHccCCC---CC-CCcchHHHHHH---HHHH-hcCcceEEEecCCcCCCcchhhhhhcccCCCCCCcEEEEEc-CChhh
Q 040015 252 LKSVTSKP---AD-VDDDLNLLQVC---LREK-LAGKKFLLVLDDVWSRRNDDWDLICSPLKAGARGSKIIITT-RDSSI 322 (1399)
Q Consensus 252 ~~~l~~~~---~~-~~~~~~~l~~~---l~~~-l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTt-R~~~v 322 (1399)
........ .. .....+++... +... ..+++=++|+|+++.-....++.+...+......+.+|++| ....+
T Consensus 83 ~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KL 162 (605)
T PRK05896 83 NTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKI 162 (605)
T ss_pred HcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhh
Confidence 21111000 00 00112222222 1111 12334469999997655566777777665544556655555 43444
Q ss_pred HHh-cCccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCchh-HHHHHH
Q 040015 323 AAS-MGTVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLLL-AVKRMG 384 (1399)
Q Consensus 323 ~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~~ 384 (1399)
... ......+++.+++.++....+.+.+...+. . -..+.+..+++.++|.+- |+..+-
T Consensus 163 l~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi-~---Is~eal~~La~lS~GdlR~AlnlLe 222 (605)
T PRK05896 163 PLTIISRCQRYNFKKLNNSELQELLKSIAKKEKI-K---IEDNAIDKIADLADGSLRDGLSILD 222 (605)
T ss_pred hHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCcHHHHHHHHH
Confidence 332 233468999999999998888876643321 1 113457789999999764 444433
No 92
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.05 E-value=5.4e-05 Score=91.29 Aligned_cols=194 Identities=14% Similarity=0.167 Sum_probs=110.1
Q ss_pred CccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHH
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTI 251 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 251 (1399)
.++||.+..++.|..++.... -...+.++|+.|+||||+|+.+++...-.... -+..+. .-...+.+
T Consensus 16 ddIIGQe~vv~~L~~ai~~~r------l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~---~~~pCg----~C~sCr~i 82 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGR------LHHAYLLTGTRGVGKTTIARILAKSLNCENAQ---HGEPCG----VCQSCTQI 82 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCC------CCeEEEEECCCCCcHHHHHHHHHHHhcccCCC---CCCCCc----ccHHHHHH
Confidence 468999999999999997543 24567899999999999999998631111000 000000 00001111
Q ss_pred HHH-----ccCCCCCCCcchHHHHHHHHHH----hcCcceEEEecCCcCCCcchhhhhhcccCCCCCCcEEEEEcCCh-h
Q 040015 252 LKS-----VTSKPADVDDDLNLLQVCLREK----LAGKKFLLVLDDVWSRRNDDWDLICSPLKAGARGSKIIITTRDS-S 321 (1399)
Q Consensus 252 ~~~-----l~~~~~~~~~~~~~l~~~l~~~----l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~ 321 (1399)
... +...... ...++.+...+... ..+++-++|+|++..-.....+.+...+......+++|++|.+. .
T Consensus 83 ~~g~~~DvlEidaAs-~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~k 161 (709)
T PRK08691 83 DAGRYVDLLEIDAAS-NTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHK 161 (709)
T ss_pred hccCccceEEEeccc-cCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccc
Confidence 000 0000000 01122232222211 23566689999996654445666666665444566677666543 3
Q ss_pred hHHh-cCccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCchhHHHHH
Q 040015 322 IAAS-MGTVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLLLAVKRM 383 (1399)
Q Consensus 322 v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 383 (1399)
+... .+....+.+++++.++....+.+.+-..+. .-..+....|++.++|.+.-+..+
T Consensus 162 L~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi----~id~eAL~~Ia~~A~GslRdAlnL 220 (709)
T PRK08691 162 VPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKI----AYEPPALQLLGRAAAGSMRDALSL 220 (709)
T ss_pred cchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCC----CcCHHHHHHHHHHhCCCHHHHHHH
Confidence 3222 123356888899999999988877643321 122346788999999998554433
No 93
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.03 E-value=9.1e-05 Score=87.00 Aligned_cols=183 Identities=14% Similarity=0.150 Sum_probs=109.7
Q ss_pred CccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCcc--cc------------------cccc
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSR--VD------------------GRFD 231 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~--~~------------------~~f~ 231 (1399)
.+++|.+..++.+..++..+. -...+.++|+.|+||||+|+.++.... .. .+++
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~------~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~ 87 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGR------IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLD 87 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCC------CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCC
Confidence 467999999999999996543 245778999999999999998875311 00 1222
Q ss_pred ceEEEEeCCccCHHHHHHHHHHHccCCCCCCCcchHHHHHHHHHH-hcCcceEEEecCCcCCCcchhhhhhcccCCCCCC
Q 040015 232 LKVWVCVSDQFDVLRVTTTILKSVTSKPADVDDDLNLLQVCLREK-LAGKKFLLVLDDVWSRRNDDWDLICSPLKAGARG 310 (1399)
Q Consensus 232 ~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~-l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~g 310 (1399)
. +++..+..... .. ..++...+... ..+++-++|+|++..-.....+.+...+......
T Consensus 88 ~-~~~~~~~~~~~-~~------------------~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~ 147 (355)
T TIGR02397 88 V-IEIDAASNNGV-DD------------------IREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEH 147 (355)
T ss_pred E-EEeeccccCCH-HH------------------HHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccc
Confidence 1 22221111111 01 11222211111 1244558899998654444566666666544456
Q ss_pred cEEEEEcCChh-hHHhc-CccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCchhHHHHHH
Q 040015 311 SKIIITTRDSS-IAASM-GTVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLLLAVKRMG 384 (1399)
Q Consensus 311 s~ilvTtR~~~-v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~ 384 (1399)
+.+|++|.+.. +...+ .....+++.+++.++....+...+-..+. .-..+.+..+++.++|.|..+....
T Consensus 148 ~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~----~i~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 148 VVFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGI----KIEDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred eeEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCChHHHHHHH
Confidence 66666665443 33222 23357888999999988888876643321 1123567889999999997665443
No 94
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.01 E-value=0.00011 Score=79.72 Aligned_cols=156 Identities=12% Similarity=0.082 Sum_probs=93.6
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHHHHccCCCCCCCcchHHHHHHHHHHhcC
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTILKSVTSKPADVDDDLNLLQVCLREKLAG 279 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~ 279 (1399)
.+.+.|+|+.|+|||+|++.+++... ..-..+.++.+..... . ..++.+.+ ..
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~--~~~~~v~y~~~~~~~~--------------------~-~~~~~~~~----~~ 97 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELS--QRGRAVGYVPLDKRAW--------------------F-VPEVLEGM----EQ 97 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEEHHHHhh--------------------h-hHHHHHHh----hh
Confidence 35789999999999999999987422 2223455666532100 0 11111111 11
Q ss_pred cceEEEecCCcCCCc-chhhh-hhcccCC-CCCC-cEEEEEcCCh---------hhHHhcCccceEeCCCCCccchHHHH
Q 040015 280 KKFLLVLDDVWSRRN-DDWDL-ICSPLKA-GARG-SKIIITTRDS---------SIAASMGTVAAHHLECLAFEDCSSIF 346 (1399)
Q Consensus 280 ~r~LlvlDdv~~~~~-~~~~~-l~~~l~~-~~~g-s~ilvTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf 346 (1399)
--++++||+..... ..|+. +...+.. -..| .++|+||+.. ++...+....+++++++++++-.+++
T Consensus 98 -~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l 176 (235)
T PRK08084 98 -LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQAL 176 (235)
T ss_pred -CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHH
Confidence 24889999955321 34543 2222211 1123 4799999753 34444556689999999999999998
Q ss_pred HHhhhcCCCCCCCccHHHHHHHHHHHccCchhHHHHHHHHH
Q 040015 347 MNQAFENRNTGISPDLETIGAEIVNKCEGLLLAVKRMGIIL 387 (1399)
Q Consensus 347 ~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l 387 (1399)
.+++...+ -.--+++..-|++.+.|..-++..+-..+
T Consensus 177 ~~~a~~~~----~~l~~~v~~~L~~~~~~d~r~l~~~l~~l 213 (235)
T PRK08084 177 QLRARLRG----FELPEDVGRFLLKRLDREMRTLFMTLDQL 213 (235)
T ss_pred HHHHHHcC----CCCCHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 88664322 12235678889999988776655444333
No 95
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.00 E-value=8.8e-05 Score=90.11 Aligned_cols=196 Identities=15% Similarity=0.181 Sum_probs=115.0
Q ss_pred CccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHH
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTI 251 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 251 (1399)
.++||-+..++.|...+..+. -...+.++|..|+||||+|+.+++...-...+ ....+..-...++|
T Consensus 16 ~divGQe~vv~~L~~~l~~~r------l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~-------~~~pCg~C~~C~~i 82 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGR------LHHAYLFSGTRGVGKTTIARLLAKGLNCETGI-------TATPCGECDNCREI 82 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCC------CCeEEEEECCCCCCHHHHHHHHHHhhhhccCC-------CCCCCCCCHHHHHH
Confidence 468999999999999886543 23456799999999999999998732111000 00111111222222
Q ss_pred HHH-------ccCCCCCCCcchHHHHHHHHHH-hcCcceEEEecCCcCCCcchhhhhhcccCCCCCCcEEEEEcCC-hhh
Q 040015 252 LKS-------VTSKPADVDDDLNLLQVCLREK-LAGKKFLLVLDDVWSRRNDDWDLICSPLKAGARGSKIIITTRD-SSI 322 (1399)
Q Consensus 252 ~~~-------l~~~~~~~~~~~~~l~~~l~~~-l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v 322 (1399)
... +........+++.++...+... ..+++-++|+|+++.-....++.+...+.......++|++|.+ ..+
T Consensus 83 ~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kL 162 (647)
T PRK07994 83 EQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 162 (647)
T ss_pred HcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCcccc
Confidence 211 0000000111122222222211 2466779999999776666777777777655556665555544 444
Q ss_pred HHhc-CccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCchhHHHHHH
Q 040015 323 AASM-GTVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLLLAVKRMG 384 (1399)
Q Consensus 323 ~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~ 384 (1399)
...+ +....+.+++++.++....+.+.+-..+. ....+....|++.++|.+--+..+.
T Consensus 163 l~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i----~~e~~aL~~Ia~~s~Gs~R~Al~ll 221 (647)
T PRK07994 163 PVTILSRCLQFHLKALDVEQIRQQLEHILQAEQI----PFEPRALQLLARAADGSMRDALSLT 221 (647)
T ss_pred chHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3322 23478999999999999888876533221 1223456789999999887554443
No 96
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.00 E-value=6.6e-05 Score=81.50 Aligned_cols=152 Identities=13% Similarity=0.101 Sum_probs=88.3
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHHHHccCCCCCCCcchHHHHHHHHHHhcC
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTILKSVTSKPADVDDDLNLLQVCLREKLAG 279 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~ 279 (1399)
.+.+.|+|..|+|||+||+.+++... +.. ....+++...... .+ .. ..
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~-~~~-~~~~~i~~~~~~~------~~-----------------------~~-~~ 89 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADAS-YGG-RNARYLDAASPLL------AF-----------------------DF-DP 89 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH-hCC-CcEEEEehHHhHH------HH-----------------------hh-cc
Confidence 45788999999999999999998421 111 1344554432110 00 01 12
Q ss_pred cceEEEecCCcCCCcchhhhhhcccCCC-CCCc-EEEEEcCChhhHH--------hcCccceEeCCCCCccchHHHHHHh
Q 040015 280 KKFLLVLDDVWSRRNDDWDLICSPLKAG-ARGS-KIIITTRDSSIAA--------SMGTVAAHHLECLAFEDCSSIFMNQ 349 (1399)
Q Consensus 280 ~r~LlvlDdv~~~~~~~~~~l~~~l~~~-~~gs-~ilvTtR~~~v~~--------~~~~~~~~~l~~L~~~~~~~lf~~~ 349 (1399)
..-+||+||+..-....-+.+...+... ..+. .||+|++...... .+.....++++++++++-..++.+.
T Consensus 90 ~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~ 169 (227)
T PRK08903 90 EAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAA 169 (227)
T ss_pred cCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHH
Confidence 2347899999643322333344433221 2333 4677776533221 2223468899999998766666654
Q ss_pred hhcCCCCCCCccHHHHHHHHHHHccCchhHHHHHHHHH
Q 040015 350 AFENRNTGISPDLETIGAEIVNKCEGLLLAVKRMGIIL 387 (1399)
Q Consensus 350 a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l 387 (1399)
+-..+ ..--++..+.+++.+.|.+..+..+-..+
T Consensus 170 ~~~~~----v~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 170 AAERG----LQLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHcC----CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 42221 12234567888889999999887776655
No 97
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.00 E-value=0.0001 Score=86.83 Aligned_cols=181 Identities=14% Similarity=0.143 Sum_probs=111.9
Q ss_pred CccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCcc------c-------------cccccc
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSR------V-------------DGRFDL 232 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~------~-------------~~~f~~ 232 (1399)
.++||.+..++.+..++..+. -...+.++|+.|+||||+|+.+++... . .+.+.-
T Consensus 13 ~dliGQe~vv~~L~~a~~~~r------i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~D 86 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNK------IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPD 86 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCC------CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCC
Confidence 468999999998888886543 234788999999999999999975210 0 001111
Q ss_pred eEEEEeCCccCHHHHHHHHHHHccCCCCCCCcchHHHHHHHHHH-hcCcceEEEecCCcCCCcchhhhhhcccCCCCCCc
Q 040015 233 KVWVCVSDQFDVLRVTTTILKSVTSKPADVDDDLNLLQVCLREK-LAGKKFLLVLDDVWSRRNDDWDLICSPLKAGARGS 311 (1399)
Q Consensus 233 ~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~-l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs 311 (1399)
++.++.+....+.+ +.++.+..... ..+++=++|+|++..-.....+.+...+......+
T Consensus 87 v~eidaas~~~vdd-------------------IR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v 147 (491)
T PRK14964 87 VIEIDAASNTSVDD-------------------IKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHV 147 (491)
T ss_pred EEEEecccCCCHHH-------------------HHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCe
Confidence 22333322222211 11111111110 13455689999997665566777777776656677
Q ss_pred EEEEEc-CChhhHHhc-CccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCchhHHH
Q 040015 312 KIIITT-RDSSIAASM-GTVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLLLAVK 381 (1399)
Q Consensus 312 ~ilvTt-R~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 381 (1399)
++|++| ....+...+ .....+++++++.++....+.+.+...+. .-..+....|++.++|.+-.+.
T Consensus 148 ~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi----~i~~eAL~lIa~~s~GslR~al 215 (491)
T PRK14964 148 KFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENI----EHDEESLKLIAENSSGSMRNAL 215 (491)
T ss_pred EEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHH
Confidence 766555 444554433 33477999999999999988887754322 1223456789999999886443
No 98
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.98 E-value=6.2e-06 Score=61.55 Aligned_cols=39 Identities=33% Similarity=0.508 Sum_probs=21.5
Q ss_pred cccEEEecCCCCcccCcccCCCCCCcEEeccCCcccccc
Q 040015 588 CLRVLSFSACRITALPDSVGDLKHLRYLDLSRTAIKQLP 626 (1399)
Q Consensus 588 ~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~Ls~n~i~~lP 626 (1399)
+|++|++++|+|+.+|..|++|++|++|++++|.|+.+|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 455666666666665555566666666666666555443
No 99
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.98 E-value=0.00011 Score=83.83 Aligned_cols=198 Identities=12% Similarity=0.123 Sum_probs=115.7
Q ss_pred CCccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCcccc--ccccceEEEEeCCccCHHHHH
Q 040015 171 ESCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVD--GRFDLKVWVCVSDQFDVLRVT 248 (1399)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~--~~f~~~~wv~~~~~~~~~~~~ 248 (1399)
...++|-++..+.+...+..+. ....+.|+|+.|+||||+|..+++..--. ..+.... ...........
T Consensus 22 ~~~l~Gh~~a~~~L~~a~~~gr------l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~---~~~~~~~c~~c 92 (351)
T PRK09112 22 NTRLFGHEEAEAFLAQAYREGK------LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPET---LADPDPASPVW 92 (351)
T ss_pred hhhccCcHHHHHHHHHHHHcCC------CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccc---cCCCCCCCHHH
Confidence 4568999999999999996553 34568899999999999999988632110 0011110 01111111233
Q ss_pred HHHHHH-------ccCCCCC------CCcchHHHHHHHHHHh-----cCcceEEEecCCcCCCcchhhhhhcccCCCCCC
Q 040015 249 TTILKS-------VTSKPAD------VDDDLNLLQVCLREKL-----AGKKFLLVLDDVWSRRNDDWDLICSPLKAGARG 310 (1399)
Q Consensus 249 ~~i~~~-------l~~~~~~------~~~~~~~l~~~l~~~l-----~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~g 310 (1399)
+.+... +..+.+. ..-.++++. .+.+.+ .+++-++|+|++..-+....+.+...+.....+
T Consensus 93 ~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~ 171 (351)
T PRK09112 93 RQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPAR 171 (351)
T ss_pred HHHHcCCCCCEEEeecccccccccccccCCHHHHH-HHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCC
Confidence 333222 1110000 000134433 333333 356678999999776666677777666554445
Q ss_pred cEE-EEEcCChhhHHhc-CccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCchhHHHHHH
Q 040015 311 SKI-IITTRDSSIAASM-GTVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLLLAVKRMG 384 (1399)
Q Consensus 311 s~i-lvTtR~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~ 384 (1399)
..+ ++|++...+.... +....+.+.+++.++..+++.+.+.. . . ...+.+..|++.++|.|..+..+.
T Consensus 172 ~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~--~---~-~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 172 ALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSS--Q---G-SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred ceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcc--c---C-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 554 4444443333322 23368999999999999999874311 1 1 113456789999999998765443
No 100
>PRK05642 DNA replication initiation factor; Validated
Probab=97.96 E-value=9.8e-05 Score=79.83 Aligned_cols=156 Identities=16% Similarity=0.196 Sum_probs=93.8
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHHHHccCCCCCCCcchHHHHHHHHHHhcC
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTILKSVTSKPADVDDDLNLLQVCLREKLAG 279 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~ 279 (1399)
...+.|+|..|+|||.|++.+++.. ...-..++|++..+ +... .. .+.+.+.+
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~--~~~~~~v~y~~~~~------~~~~---------------~~----~~~~~~~~ 97 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRF--EQRGEPAVYLPLAE------LLDR---------------GP----ELLDNLEQ 97 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH--HhCCCcEEEeeHHH------HHhh---------------hH----HHHHhhhh
Confidence 4678999999999999999998732 22223466776532 1110 01 12222222
Q ss_pred cceEEEecCCcCCC-cchhhh-hhcccCC-CCCCcEEEEEcCChh---------hHHhcCccceEeCCCCCccchHHHHH
Q 040015 280 KKFLLVLDDVWSRR-NDDWDL-ICSPLKA-GARGSKIIITTRDSS---------IAASMGTVAAHHLECLAFEDCSSIFM 347 (1399)
Q Consensus 280 ~r~LlvlDdv~~~~-~~~~~~-l~~~l~~-~~~gs~ilvTtR~~~---------v~~~~~~~~~~~l~~L~~~~~~~lf~ 347 (1399)
- =++|+||+.... ...|+. +...+.. ...|.+||+|++... +...+....++++++++.++-.+++.
T Consensus 98 ~-d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~ 176 (234)
T PRK05642 98 Y-ELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQ 176 (234)
T ss_pred C-CEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHH
Confidence 2 268899996432 234543 3333321 224667888887422 22233344779999999999999998
Q ss_pred HhhhcCCCCCCCccHHHHHHHHHHHccCchhHHHHHHHHH
Q 040015 348 NQAFENRNTGISPDLETIGAEIVNKCEGLLLAVKRMGIIL 387 (1399)
Q Consensus 348 ~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l 387 (1399)
+++....- .--+++..-|++++.|..-++..+-..|
T Consensus 177 ~ka~~~~~----~l~~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 177 LRASRRGL----HLTDEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred HHHHHcCC----CCCHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 77654321 1224678889999988876665444433
No 101
>PRK09087 hypothetical protein; Validated
Probab=97.95 E-value=0.00014 Score=77.81 Aligned_cols=142 Identities=13% Similarity=0.143 Sum_probs=88.1
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHHHHccCCCCCCCcchHHHHHHHHHHhcC
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTILKSVTSKPADVDDDLNLLQVCLREKLAG 279 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~ 279 (1399)
.+.+.|+|..|+|||+|++.++.... ..+++.. ....+++. .+.+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~-------~~~i~~~------~~~~~~~~----------------------~~~~ 88 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD-------ALLIHPN------EIGSDAAN----------------------AAAE 88 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC-------CEEecHH------HcchHHHH----------------------hhhc
Confidence 46789999999999999999887421 1233321 11111111 1111
Q ss_pred cceEEEecCCcCCC--cchhhhhhcccCCCCCCcEEEEEcCC---------hhhHHhcCccceEeCCCCCccchHHHHHH
Q 040015 280 KKFLLVLDDVWSRR--NDDWDLICSPLKAGARGSKIIITTRD---------SSIAASMGTVAAHHLECLAFEDCSSIFMN 348 (1399)
Q Consensus 280 ~r~LlvlDdv~~~~--~~~~~~l~~~l~~~~~gs~ilvTtR~---------~~v~~~~~~~~~~~l~~L~~~~~~~lf~~ 348 (1399)
-+|++||+.... .+.+-.+...+. ..|..||+|++. ++....+....+++++++++++-.+++.+
T Consensus 89 --~~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~ 164 (226)
T PRK09087 89 --GPVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFK 164 (226)
T ss_pred --CeEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHH
Confidence 278889995432 122222222222 236679998873 44455556668999999999999999998
Q ss_pred hhhcCCCCCCCccHHHHHHHHHHHccCchhHHHHHH
Q 040015 349 QAFENRNTGISPDLETIGAEIVNKCEGLLLAVKRMG 384 (1399)
Q Consensus 349 ~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~ 384 (1399)
++-... -.--+++..-|++.+.|..-++..+-
T Consensus 165 ~~~~~~----~~l~~ev~~~La~~~~r~~~~l~~~l 196 (226)
T PRK09087 165 LFADRQ----LYVDPHVVYYLVSRMERSLFAAQTIV 196 (226)
T ss_pred HHHHcC----CCCCHHHHHHHHHHhhhhHHHHHHHH
Confidence 874421 12224667888888888887766433
No 102
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.95 E-value=9.6e-05 Score=86.93 Aligned_cols=201 Identities=12% Similarity=0.115 Sum_probs=112.5
Q ss_pred CccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEE-eCCccCHHHHHHH
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVC-VSDQFDVLRVTTT 250 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~ 250 (1399)
.+++|.+..++.|..++..+. -...+.++|+.|+||||+|+.+++...-...+....|.. +...+..-...+.
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~------~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~ 89 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGR------VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRD 89 (397)
T ss_pred hhccChHHHHHHHHHHHHhCC------cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHH
Confidence 468999999999999886543 234578999999999999999986321111111111110 0111111111222
Q ss_pred HHHHccCCC---CC-CCcchHHHHHHHHHH----hcCcceEEEecCCcCCCcchhhhhhcccCCCCCCcEEEEEc-CChh
Q 040015 251 ILKSVTSKP---AD-VDDDLNLLQVCLREK----LAGKKFLLVLDDVWSRRNDDWDLICSPLKAGARGSKIIITT-RDSS 321 (1399)
Q Consensus 251 i~~~l~~~~---~~-~~~~~~~l~~~l~~~----l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTt-R~~~ 321 (1399)
+........ .. .....+++.+..... ..+++-++|+|++..-....++.+...+......+.+|++| +...
T Consensus 90 ~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~k 169 (397)
T PRK14955 90 FDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHK 169 (397)
T ss_pred HhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHH
Confidence 221110000 00 001133333322211 23455688999997655557778877776655666666555 4444
Q ss_pred hHHhcC-ccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCchhHHHH
Q 040015 322 IAASMG-TVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLLLAVKR 382 (1399)
Q Consensus 322 v~~~~~-~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~ 382 (1399)
+...+. ....++++++++++....+...+-..+. .-..+.+..|++.++|.+--+..
T Consensus 170 l~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~----~i~~~al~~l~~~s~g~lr~a~~ 227 (397)
T PRK14955 170 IPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGI----SVDADALQLIGRKAQGSMRDAQS 227 (397)
T ss_pred hHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHH
Confidence 443322 2357899999999888888776533211 12245678999999998854433
No 103
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.93 E-value=0.00023 Score=74.43 Aligned_cols=181 Identities=17% Similarity=0.193 Sum_probs=102.2
Q ss_pred CccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHH
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTI 251 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 251 (1399)
.+|||.++-++.+.=++..... .+...-.+.++|++|.||||||.-+++. ....+ -+..+....-..-+..+
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~--r~e~lDHvLl~GPPGlGKTTLA~IIA~E--mgvn~----k~tsGp~leK~gDlaai 97 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKK--RGEALDHVLLFGPPGLGKTTLAHIIANE--LGVNL----KITSGPALEKPGDLAAI 97 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHh--cCCCcCeEEeeCCCCCcHHHHHHHHHHH--hcCCe----EecccccccChhhHHHH
Confidence 4799999988888777765431 2345778999999999999999999984 33322 11111111111112223
Q ss_pred HHHccCCCCCCCcchHHHHHHHHHHhcCcceEEEecCCcCCCcchhhhhhcccCC--------CCCCcE-----------
Q 040015 252 LKSVTSKPADVDDDLNLLQVCLREKLAGKKFLLVLDDVWSRRNDDWDLICSPLKA--------GARGSK----------- 312 (1399)
Q Consensus 252 ~~~l~~~~~~~~~~~~~l~~~l~~~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~--------~~~gs~----------- 312 (1399)
+..+.. .=++.+|.+..-....-+-+..++.+ .++++|
T Consensus 98 Lt~Le~-----------------------~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTL 154 (332)
T COG2255 98 LTNLEE-----------------------GDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTL 154 (332)
T ss_pred HhcCCc-----------------------CCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeE
Confidence 332222 22444455543322222222222221 123333
Q ss_pred EEEEcCChhhHHhcCc--cceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCchhHHHHHHHHH
Q 040015 313 IIITTRDSSIAASMGT--VAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLLLAVKRMGIIL 387 (1399)
Q Consensus 313 ilvTtR~~~v~~~~~~--~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l 387 (1399)
|=.|||.-.+...+.. ..+.+++--+.+|-.++..+.|..-.- .-.++-+.+|+++..|-|--+.-+-+..
T Consensus 155 IGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i----~i~~~~a~eIA~rSRGTPRIAnRLLrRV 227 (332)
T COG2255 155 IGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGI----EIDEEAALEIARRSRGTPRIANRLLRRV 227 (332)
T ss_pred eeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCC----CCChHHHHHHHHhccCCcHHHHHHHHHH
Confidence 3368997555443321 245677888888988988887733221 2224568999999999996554444333
No 104
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=97.93 E-value=0.00014 Score=76.24 Aligned_cols=91 Identities=13% Similarity=0.145 Sum_probs=63.8
Q ss_pred CcceEEEecCCcCCCcchhhhhhcccCCCCCCcEEEEEcCCh-hhHHhc-CccceEeCCCCCccchHHHHHHhhhcCCCC
Q 040015 279 GKKFLLVLDDVWSRRNDDWDLICSPLKAGARGSKIIITTRDS-SIAASM-GTVAAHHLECLAFEDCSSIFMNQAFENRNT 356 (1399)
Q Consensus 279 ~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 356 (1399)
+.+-++|+||+..-..+.++.+...+......+.+|++|++. .+...+ .....+++.+++.++..+.+.+..
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~g------ 168 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQG------ 168 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHcC------
Confidence 456689999997655556777777776655566777777643 332222 233689999999999988887761
Q ss_pred CCCccHHHHHHHHHHHccCchhH
Q 040015 357 GISPDLETIGAEIVNKCEGLLLA 379 (1399)
Q Consensus 357 ~~~~~~~~~~~~i~~~~~g~PLa 379 (1399)
.. .+.+..|++.++|.|..
T Consensus 169 -i~---~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 169 -IS---EEAAELLLALAGGSPGA 187 (188)
T ss_pred -CC---HHHHHHHHHHcCCCccc
Confidence 11 35688999999999853
No 105
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.92 E-value=0.00014 Score=84.04 Aligned_cols=195 Identities=9% Similarity=0.116 Sum_probs=108.5
Q ss_pred CccccchhHHHHHHHHHhccCCCC---CCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHH
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSS---SSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVT 248 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~---~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 248 (1399)
.+++|-+..++.+..++..+.... +..-...+.++|+.|+|||++|+.+++...-... . +..+ ..-...
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~--~--~~~C----g~C~~C 76 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDP--D--EPGC----GECRAC 76 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCC--C--CCCC----CCCHHH
Confidence 358899999999999997643100 0113456889999999999999998752110000 0 0000 000111
Q ss_pred HHHHHHccCC-----CCCCCcchHHHHHHHHHH----hcCcceEEEecCCcCCCcchhhhhhcccCCCCCCcEEEEEcCC
Q 040015 249 TTILKSVTSK-----PADVDDDLNLLQVCLREK----LAGKKFLLVLDDVWSRRNDDWDLICSPLKAGARGSKIIITTRD 319 (1399)
Q Consensus 249 ~~i~~~l~~~-----~~~~~~~~~~l~~~l~~~----l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~ 319 (1399)
+.+...-... .....-.++++...+... ..+++-++|+|+++.-.....+.+...+.....+..+|++|.+
T Consensus 77 ~~~~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~ 156 (394)
T PRK07940 77 RTVLAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPS 156 (394)
T ss_pred HHHhcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECC
Confidence 1111000000 000001123322222111 1245558888999776555666676666555556666665555
Q ss_pred -hhhHHhc-CccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCchhHHHHH
Q 040015 320 -SSIAASM-GTVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLLLAVKRM 383 (1399)
Q Consensus 320 -~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 383 (1399)
..+...+ +....+.+++++.++..+.+.+.. . .. .+.+..+++.++|.|..+..+
T Consensus 157 ~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~---~---~~---~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 157 PEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRD---G---VD---PETARRAARASQGHIGRARRL 213 (394)
T ss_pred hHHChHHHHhhCeEEECCCCCHHHHHHHHHHhc---C---CC---HHHHHHHHHHcCCCHHHHHHH
Confidence 3444332 334789999999999988886432 0 11 244778999999999765444
No 106
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.92 E-value=0.00015 Score=88.07 Aligned_cols=198 Identities=15% Similarity=0.157 Sum_probs=113.9
Q ss_pred CccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCcccccc--ccceEEEEeCCccCHHHHHH
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGR--FDLKVWVCVSDQFDVLRVTT 249 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~--f~~~~wv~~~~~~~~~~~~~ 249 (1399)
.++||-+..++.|..++.... -...+.++|..|+||||+|+.+++...-... ....-+ ..++.-...+
T Consensus 16 ~dviGQe~vv~~L~~~l~~~r------l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C~ 85 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQR------LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQACR 85 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCC------CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHHH
Confidence 468999999999999987553 2456789999999999999999652110000 000000 1111112222
Q ss_pred HHHHHccCCC---C-CCCcchHHHHHHHHHH----hcCcceEEEecCCcCCCcchhhhhhcccCCCCCCcEEEEEc-CCh
Q 040015 250 TILKSVTSKP---A-DVDDDLNLLQVCLREK----LAGKKFLLVLDDVWSRRNDDWDLICSPLKAGARGSKIIITT-RDS 320 (1399)
Q Consensus 250 ~i~~~l~~~~---~-~~~~~~~~l~~~l~~~----l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTt-R~~ 320 (1399)
.|...-.... + .....++++.+.+... ..++.-++|+|+++.-....++.+...+.......++|++| ...
T Consensus 86 ~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~ 165 (618)
T PRK14951 86 DIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQ 165 (618)
T ss_pred HHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCch
Confidence 2211000000 0 0001133333333221 12445589999998776677888877776655566666555 434
Q ss_pred hhHHhc-CccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCchhHHHHH
Q 040015 321 SIAASM-GTVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLLLAVKRM 383 (1399)
Q Consensus 321 ~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 383 (1399)
.+...+ .....+++++++.++....+.+.+...+. ....+....|++.++|.+--+..+
T Consensus 166 kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi----~ie~~AL~~La~~s~GslR~al~l 225 (618)
T PRK14951 166 KVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENV----PAEPQALRLLARAARGSMRDALSL 225 (618)
T ss_pred hhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 443322 33478999999999998888876643322 112345788899999988555443
No 107
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=97.91 E-value=3.1e-05 Score=88.72 Aligned_cols=193 Identities=15% Similarity=0.129 Sum_probs=113.1
Q ss_pred CCccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccc--ccc------ceEEEEeCCcc
Q 040015 171 ESCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDG--RFD------LKVWVCVSDQF 242 (1399)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~--~f~------~~~wv~~~~~~ 242 (1399)
..+++|.++.++.+.+.+..+. -...+.++|+.|+||+|+|..+++..-=.. ... ...-+ ....
T Consensus 18 ~~~iiGq~~~~~~L~~~~~~~r------l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~--~~~c 89 (365)
T PRK07471 18 TTALFGHAAAEAALLDAYRSGR------LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAI--DPDH 89 (365)
T ss_pred hhhccChHHHHHHHHHHHHcCC------CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccC--CCCC
Confidence 3568999999999999997653 244688999999999999988876311000 000 00000 0000
Q ss_pred CHHHHHHHHHHHccCC-------CCCC-----C-cchHHHHHHHHHHh-----cCcceEEEecCCcCCCcchhhhhhccc
Q 040015 243 DVLRVTTTILKSVTSK-------PADV-----D-DDLNLLQVCLREKL-----AGKKFLLVLDDVWSRRNDDWDLICSPL 304 (1399)
Q Consensus 243 ~~~~~~~~i~~~l~~~-------~~~~-----~-~~~~~l~~~l~~~l-----~~~r~LlvlDdv~~~~~~~~~~l~~~l 304 (1399)
...+.+...-... ..+. . =.++++. .+.+.+ .+.+-++|+||+..-+....+.+...+
T Consensus 90 ---~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR-~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~L 165 (365)
T PRK07471 90 ---PVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVR-ELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVL 165 (365)
T ss_pred ---hHHHHHHccCCCCeEEEecccccccccccccccHHHHH-HHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHH
Confidence 1111111110000 0000 0 0134432 233333 255678999999777667777777777
Q ss_pred CCCCCCcEEEEEcCCh-hhHHhc-CccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCchhHHHH
Q 040015 305 KAGARGSKIIITTRDS-SIAASM-GTVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLLLAVKR 382 (1399)
Q Consensus 305 ~~~~~gs~ilvTtR~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~ 382 (1399)
.....++.+|++|.+. .+...+ .....+.+.+++.++..+++.+.... .+ .+....+++.++|.|..+..
T Consensus 166 Eepp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~------~~--~~~~~~l~~~s~Gsp~~Al~ 237 (365)
T PRK07471 166 EEPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD------LP--DDPRAALAALAEGSVGRALR 237 (365)
T ss_pred hcCCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc------CC--HHHHHHHHHHcCCCHHHHHH
Confidence 6555566677777654 333322 33468999999999999999775311 11 11226789999999986655
Q ss_pred H
Q 040015 383 M 383 (1399)
Q Consensus 383 ~ 383 (1399)
+
T Consensus 238 l 238 (365)
T PRK07471 238 L 238 (365)
T ss_pred H
Confidence 4
No 108
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.89 E-value=5.3e-05 Score=88.42 Aligned_cols=182 Identities=15% Similarity=0.142 Sum_probs=100.2
Q ss_pred CCCccccchhHHHHHHHHHhccCCCC------CCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccC
Q 040015 170 DESCVYGRENDKNAIVELLMVEDDSS------SSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFD 243 (1399)
Q Consensus 170 ~~~~~vGr~~~~~~l~~~L~~~~~~~------~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 243 (1399)
...++.|+++.+++|.+.+...-..+ +-...+-+.++|++|+|||++|+.+++. ....| +.+..
T Consensus 120 ~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~--l~~~~-----~~v~~--- 189 (364)
T TIGR01242 120 SYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNATF-----IRVVG--- 189 (364)
T ss_pred CHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--CCCCE-----Eecch---
Confidence 34578999999999998875321000 0112455889999999999999999984 33333 22211
Q ss_pred HHHHHHHHHHHccCCCCCCCcchHHHHHHHHHHhcCcceEEEecCCcCCC-----------cc---hhhhhhcccCC--C
Q 040015 244 VLRVTTTILKSVTSKPADVDDDLNLLQVCLREKLAGKKFLLVLDDVWSRR-----------ND---DWDLICSPLKA--G 307 (1399)
Q Consensus 244 ~~~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~~r~LlvlDdv~~~~-----------~~---~~~~l~~~l~~--~ 307 (1399)
..+. ....+ .....+...+...-...+.+|++|+++.-. .. .+..+...+.. .
T Consensus 190 -~~l~----~~~~g------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~ 258 (364)
T TIGR01242 190 -SELV----RKYIG------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDP 258 (364)
T ss_pred -HHHH----HHhhh------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCC
Confidence 1111 11100 001112222222223456899999986421 01 12222222211 1
Q ss_pred CCCcEEEEEcCChhhH-Hhc----CccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCch
Q 040015 308 ARGSKIIITTRDSSIA-ASM----GTVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLL 377 (1399)
Q Consensus 308 ~~gs~ilvTtR~~~v~-~~~----~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~P 377 (1399)
..+.+||.||...... ..+ .-...+.++..+.++..++|..++.+.... .... ...+++.+.|..
T Consensus 259 ~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~-~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 259 RGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLA-EDVD----LEAIAKMTEGAS 328 (364)
T ss_pred CCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCC-ccCC----HHHHHHHcCCCC
Confidence 2466788888754321 111 123578899999999999998877543221 1112 356777777754
No 109
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.86 E-value=0.00016 Score=86.81 Aligned_cols=179 Identities=15% Similarity=0.134 Sum_probs=109.0
Q ss_pred CccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccc-------------------cccc
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDG-------------------RFDL 232 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~-------------------~f~~ 232 (1399)
.++||-+..++.|..++.... -...+.++|+.|+||||+|+.+++...-.. .|.-
T Consensus 16 ~divGq~~v~~~L~~~~~~~~------l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d 89 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQY------LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPD 89 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCC------CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCce
Confidence 468999999999999996543 234678999999999999999986321111 1111
Q ss_pred eEEEEeCCccCHHHHHHHHHHHccCCCCCCCcchHHHHHHHHHH----hcCcceEEEecCCcCCCcchhhhhhcccCCCC
Q 040015 233 KVWVCVSDQFDVLRVTTTILKSVTSKPADVDDDLNLLQVCLREK----LAGKKFLLVLDDVWSRRNDDWDLICSPLKAGA 308 (1399)
Q Consensus 233 ~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~----l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~ 308 (1399)
++.+..+.... ++++.+.+... ..++.-++|+|+++.-..+..+.+...+....
T Consensus 90 ~~eidaas~~~----------------------v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp 147 (509)
T PRK14958 90 LFEVDAASRTK----------------------VEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPP 147 (509)
T ss_pred EEEEcccccCC----------------------HHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccC
Confidence 22222211111 23322222111 13555689999997766667777777776655
Q ss_pred CCcEEEEEcCC-hhhHHhc-CccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCchhHHHH
Q 040015 309 RGSKIIITTRD-SSIAASM-GTVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLLLAVKR 382 (1399)
Q Consensus 309 ~gs~ilvTtR~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~ 382 (1399)
..+++|++|.+ ..+...+ +....+++++++.++....+.+.+-..+. .-..+....|++.++|.+.-+..
T Consensus 148 ~~~~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi----~~~~~al~~ia~~s~GslR~al~ 219 (509)
T PRK14958 148 SHVKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENV----EFENAALDLLARAANGSVRDALS 219 (509)
T ss_pred CCeEEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCcHHHHHH
Confidence 66776665543 3333222 23367889999998887776665533221 11233467889999998865443
No 110
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.85 E-value=2.6e-05 Score=87.63 Aligned_cols=91 Identities=15% Similarity=0.124 Sum_probs=63.1
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCc--cCHHHHHHHHHHHccCCCCCCCcch-----HHHHH
Q 040015 199 NVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQ--FDVLRVTTTILKSVTSKPADVDDDL-----NLLQV 271 (1399)
Q Consensus 199 ~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~-----~~l~~ 271 (1399)
....++|+|++|+|||||++.+++.... .+|+..+||.+.+. .++.++++.++..+-...-+..... ..+.+
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~-nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITR-NHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhcc-cCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 3567899999999999999999986433 37999999999866 7888999988655433332221101 11222
Q ss_pred HHHHH-hcCcceEEEecCCc
Q 040015 272 CLREK-LAGKKFLLVLDDVW 290 (1399)
Q Consensus 272 ~l~~~-l~~~r~LlvlDdv~ 290 (1399)
..+.. -.+++++|++|++.
T Consensus 246 ~Ae~~~~~GkdVVLlIDEit 265 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSIT 265 (415)
T ss_pred HHHHHHHcCCCeEEEEEChh
Confidence 22222 36899999999994
No 111
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.84 E-value=3.5e-06 Score=100.39 Aligned_cols=101 Identities=27% Similarity=0.385 Sum_probs=71.9
Q ss_pred cCCCCcccEEEecCCCCcccCcccCCCCCCcEEeccCCccccccccccCCCCCcEEEccCCCCCCCcChhhccCCCCCEE
Q 040015 583 LPRLKCLRVLSFSACRITALPDSVGDLKHLRYLDLSRTAIKQLPDSTGNLCNLQSIILLECYSLSKLPTDLGNLTGLRHL 662 (1399)
Q Consensus 583 ~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~Ls~n~i~~lP~~i~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L 662 (1399)
...+++|.+|++.+|.|..+...+..+.+|++|+|++|.|..+. .+..|..|+.|++++| .+..++ .+..+++|+.+
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N-~i~~~~-~~~~l~~L~~l 167 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGN-LISDIS-GLESLKSLKLL 167 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhheeccC-cchhcc-CCccchhhhcc
Confidence 45677888888888888877655777888888888888888773 4677777888888887 666554 36668888888
Q ss_pred EccCCcccccCcc-ccCCCCCCccC
Q 040015 663 RMSGSRLREMPMK-MYKLKNLQTLS 686 (1399)
Q Consensus 663 ~l~~~~l~~lp~~-i~~L~~L~~L~ 686 (1399)
++++|.+..+... ...+.+++.+.
T Consensus 168 ~l~~n~i~~ie~~~~~~~~~l~~l~ 192 (414)
T KOG0531|consen 168 DLSYNRIVDIENDELSELISLEELD 192 (414)
T ss_pred cCCcchhhhhhhhhhhhccchHHHh
Confidence 8888877766542 24445555444
No 112
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.83 E-value=1.8e-05 Score=59.02 Aligned_cols=39 Identities=38% Similarity=0.532 Sum_probs=24.2
Q ss_pred CCCcEEeccCCccccccccccCCCCCcEEEccCCCCCCCc
Q 040015 610 KHLRYLDLSRTAIKQLPDSTGNLCNLQSIILLECYSLSKL 649 (1399)
Q Consensus 610 ~~L~~L~Ls~n~i~~lP~~i~~L~~L~~L~L~~~~~~~~l 649 (1399)
++|++|++++|+|+.+|..+++|++|++|++++| .+..+
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i 39 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDI 39 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBE
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCC
Confidence 3567777777777777666667777777777666 44444
No 113
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.82 E-value=0.00033 Score=84.83 Aligned_cols=180 Identities=17% Similarity=0.195 Sum_probs=108.5
Q ss_pred CccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccc-------------------cccc
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDG-------------------RFDL 232 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~-------------------~f~~ 232 (1399)
.++||-+..++.+..++.... -...+.++|+.|+||||+|+.+++...-.. .|.-
T Consensus 16 ~divGq~~v~~~L~~~i~~~~------~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d 89 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQR------LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVD 89 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCC------CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCc
Confidence 468999999999999987543 234567999999999999999976321100 0111
Q ss_pred eEEEEeCCccCHHHHHHHHHHHccCCCCCCCcchHHHHHHHHHH----hcCcceEEEecCCcCCCcchhhhhhcccCCCC
Q 040015 233 KVWVCVSDQFDVLRVTTTILKSVTSKPADVDDDLNLLQVCLREK----LAGKKFLLVLDDVWSRRNDDWDLICSPLKAGA 308 (1399)
Q Consensus 233 ~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~----l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~ 308 (1399)
.+++..+... ..+++...+... ..+++-++|+|++..-.....+.+...+....
T Consensus 90 ~~ei~~~~~~----------------------~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp 147 (527)
T PRK14969 90 LIEVDAASNT----------------------QVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPP 147 (527)
T ss_pred eeEeeccccC----------------------CHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCC
Confidence 1222111111 123322222211 13566799999997655556777777776555
Q ss_pred CCcEEEEEcCC-hhhHHhc-CccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCchh-HHHHH
Q 040015 309 RGSKIIITTRD-SSIAASM-GTVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLLL-AVKRM 383 (1399)
Q Consensus 309 ~gs~ilvTtR~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~ 383 (1399)
..+.+|++|.+ ..+...+ +....+++++++.++....+.+.+...+. ....+..+.|++.++|.+- |+..+
T Consensus 148 ~~~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi----~~~~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 148 EHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENI----PFDATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred CCEEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 56666655543 3333221 22367899999999988888776533221 1223456789999999885 44443
No 114
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.82 E-value=3.2e-06 Score=100.75 Aligned_cols=100 Identities=29% Similarity=0.402 Sum_probs=83.6
Q ss_pred CCCcccEEEecCCCCcccCcccCCCCCCcEEeccCCccccccccccCCCCCcEEEccCCCCCCCcChhhccCCCCCEEEc
Q 040015 585 RLKCLRVLSFSACRITALPDSVGDLKHLRYLDLSRTAIKQLPDSTGNLCNLQSIILLECYSLSKLPTDLGNLTGLRHLRM 664 (1399)
Q Consensus 585 ~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~Ls~n~i~~lP~~i~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l 664 (1399)
.+..+..+++..|.|..+-..++.+++|.+|++.+|.|+.+...+..+.+|++|++++| .+..+. .+..++.|+.|++
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N-~I~~i~-~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFN-KITKLE-GLSTLTLLKELNL 147 (414)
T ss_pred HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccc-cccccc-chhhccchhhhee
Confidence 46777778899998888666788999999999999999999777999999999999999 777774 4888999999999
Q ss_pred cCCcccccCccccCCCCCCccCc
Q 040015 665 SGSRLREMPMKMYKLKNLQTLSH 687 (1399)
Q Consensus 665 ~~~~l~~lp~~i~~L~~L~~L~~ 687 (1399)
++|.+..++ ++..+++|+.++.
T Consensus 148 ~~N~i~~~~-~~~~l~~L~~l~l 169 (414)
T KOG0531|consen 148 SGNLISDIS-GLESLKSLKLLDL 169 (414)
T ss_pred ccCcchhcc-CCccchhhhcccC
Confidence 999998774 4555666666654
No 115
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.81 E-value=0.00043 Score=83.43 Aligned_cols=199 Identities=12% Similarity=0.155 Sum_probs=114.3
Q ss_pred CccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHH
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTI 251 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 251 (1399)
.+++|-+..++.|..++.... -...+.++|+.|+||||+|+.+++...-....+ ...++.-...+.|
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~r------i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~-------~~pCg~C~sC~~i 82 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENR------VAPAYLFSGTRGVGKTTIARIFAKALNCETAPT-------GEPCNTCEQCRKV 82 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCC------CCceEEEECCCCCCHHHHHHHHHHhccccCCCC-------CCCCcccHHHHHH
Confidence 467899888888888886542 245778899999999999999987421110000 0011111111222
Q ss_pred HHHccCC-------CCCCCcchHHHHHHHHH-HhcCcceEEEecCCcCCCcchhhhhhcccCCCCCCcEEEEEcCC-hhh
Q 040015 252 LKSVTSK-------PADVDDDLNLLQVCLRE-KLAGKKFLLVLDDVWSRRNDDWDLICSPLKAGARGSKIIITTRD-SSI 322 (1399)
Q Consensus 252 ~~~l~~~-------~~~~~~~~~~l~~~l~~-~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v 322 (1399)
....... .....+.+..+.+.+.. -..+++-+||+|++..-....++.+...+........+|++|.. ..+
T Consensus 83 ~~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kl 162 (624)
T PRK14959 83 TQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKF 162 (624)
T ss_pred hcCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhh
Confidence 1110000 00000112222222221 12356679999999766556677777776544445556665544 444
Q ss_pred HHhc-CccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCch-hHHHHHHHHH
Q 040015 323 AASM-GTVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLL-LAVKRMGIIL 387 (1399)
Q Consensus 323 ~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~P-Lai~~~~~~l 387 (1399)
...+ .....+++++++.++....+...+..... .-..+.++.|++.++|.+ .|+..+...+
T Consensus 163 l~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi----~id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 163 PVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGV----DYDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred hHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 4332 23367899999999999888876644321 122356788999999965 6777766554
No 116
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.80 E-value=0.00018 Score=76.65 Aligned_cols=184 Identities=14% Similarity=0.160 Sum_probs=101.0
Q ss_pred ccccch-hHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccc--cceEEEEeCCccCHHHHHH
Q 040015 173 CVYGRE-NDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRF--DLKVWVCVSDQFDVLRVTT 249 (1399)
Q Consensus 173 ~~vGr~-~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~ 249 (1399)
-++|-. +..-.....+.... +.....+.|+|..|+|||.|.+++++. ..... ..+++++. .+...
T Consensus 10 fv~g~~N~~a~~~~~~ia~~~----~~~~~~l~l~G~~G~GKTHLL~Ai~~~--~~~~~~~~~v~y~~~------~~f~~ 77 (219)
T PF00308_consen 10 FVVGESNELAYAAAKAIAENP----GERYNPLFLYGPSGLGKTHLLQAIANE--AQKQHPGKRVVYLSA------EEFIR 77 (219)
T ss_dssp S--TTTTHHHHHHHHHHHHST----TTSSSEEEEEESTTSSHHHHHHHHHHH--HHHHCTTS-EEEEEH------HHHHH
T ss_pred CCcCCcHHHHHHHHHHHHhcC----CCCCCceEEECCCCCCHHHHHHHHHHH--HHhccccccceeecH------HHHHH
Confidence 345642 33334444454432 123456789999999999999999984 32222 23555543 34555
Q ss_pred HHHHHccCCCCCCCcchHHHHHHHHHHhcCcceEEEecCCcCCCcc-hhhh-hhcccCC-CCCCcEEEEEcCCh------
Q 040015 250 TILKSVTSKPADVDDDLNLLQVCLREKLAGKKFLLVLDDVWSRRND-DWDL-ICSPLKA-GARGSKIIITTRDS------ 320 (1399)
Q Consensus 250 ~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~~r~LlvlDdv~~~~~~-~~~~-l~~~l~~-~~~gs~ilvTtR~~------ 320 (1399)
.+...+.... .++ +++.++ .-=+|++||++.-... .|.. +...+.. ...|-+||+|++..
T Consensus 78 ~~~~~~~~~~------~~~----~~~~~~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~ 146 (219)
T PF00308_consen 78 EFADALRDGE------IEE----FKDRLR-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSG 146 (219)
T ss_dssp HHHHHHHTTS------HHH----HHHHHC-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTT
T ss_pred HHHHHHHccc------chh----hhhhhh-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccc
Confidence 5555543311 222 223333 3358999999664322 2332 2222211 12466899999642
Q ss_pred ---hhHHhcCccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCchhHHHHH
Q 040015 321 ---SIAASMGTVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLLLAVKRM 383 (1399)
Q Consensus 321 ---~v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 383 (1399)
++...+...-++++++.++++-.+++.+.|...+- .--+++++-|++.+.+..-.+..+
T Consensus 147 ~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~----~l~~~v~~~l~~~~~~~~r~L~~~ 208 (219)
T PF00308_consen 147 LLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGI----ELPEEVIEYLARRFRRDVRELEGA 208 (219)
T ss_dssp S-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT------S-HHHHHHHHHHTTSSHHHHHHH
T ss_pred cChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCC----CCcHHHHHHHHHhhcCCHHHHHHH
Confidence 23334445678999999999999999988854332 233566777888877766555443
No 117
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.79 E-value=0.00037 Score=85.03 Aligned_cols=199 Identities=13% Similarity=0.118 Sum_probs=114.5
Q ss_pred CccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCcccccccc--ceEEEEeCCccCHHHHHH
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFD--LKVWVCVSDQFDVLRVTT 249 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~ 249 (1399)
.++||.+..++.|..++..+. -...+.++|+.|+||||+|+.+++...-..... ...+- .+..-...+
T Consensus 24 ~dliGq~~~v~~L~~~~~~gr------i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~----~cg~c~~C~ 93 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGR------IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTID----LCGVGEHCQ 93 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCC------CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccc----cCcccHHHH
Confidence 468999999999999997543 244688999999999999999987321111000 00000 011111112
Q ss_pred HHHHHccCCC----CCCCcchHHHHHHHHHH----hcCcceEEEecCCcCCCcchhhhhhcccCCCCCCcEEEEEc-CCh
Q 040015 250 TILKSVTSKP----ADVDDDLNLLQVCLREK----LAGKKFLLVLDDVWSRRNDDWDLICSPLKAGARGSKIIITT-RDS 320 (1399)
Q Consensus 250 ~i~~~l~~~~----~~~~~~~~~l~~~l~~~----l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTt-R~~ 320 (1399)
.|...-.... ......++++.+.+... ..+++-++|+|++..-.....+.+...+..-..++.+|++| ...
T Consensus 94 ~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~ 173 (598)
T PRK09111 94 AIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIR 173 (598)
T ss_pred HHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChh
Confidence 2222111100 00011133333222111 23455579999996655556777777776555667665554 444
Q ss_pred hhHHhc-CccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCchhHHHHHH
Q 040015 321 SIAASM-GTVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLLLAVKRMG 384 (1399)
Q Consensus 321 ~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~ 384 (1399)
.+...+ .....+++.+++.++....+.+.+-..+. .-..+....|++.++|.+.-+...-
T Consensus 174 kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi----~i~~eAl~lIa~~a~Gdlr~al~~L 234 (598)
T PRK09111 174 KVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGV----EVEDEALALIARAAEGSVRDGLSLL 234 (598)
T ss_pred hhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 444333 23367899999999999888887643321 1123567889999999986655443
No 118
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.79 E-value=0.00013 Score=83.69 Aligned_cols=120 Identities=12% Similarity=0.129 Sum_probs=76.6
Q ss_pred CccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHH
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTI 251 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 251 (1399)
.++++.++..+.+...|... +.+.++|++|+|||++|+.+++.......|+.+.||.++..++..+.+...
T Consensus 175 ~d~~i~e~~le~l~~~L~~~---------~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~ 245 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK---------KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGY 245 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC---------CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhccc
Confidence 45788999999999999643 367889999999999999999854444578889999999888766554322
Q ss_pred HHHccCCCCCCCcchHHHHHHHHHHh--cCcceEEEecCCcCCCcch-hhhhhccc
Q 040015 252 LKSVTSKPADVDDDLNLLQVCLREKL--AGKKFLLVLDDVWSRRNDD-WDLICSPL 304 (1399)
Q Consensus 252 ~~~l~~~~~~~~~~~~~l~~~l~~~l--~~~r~LlvlDdv~~~~~~~-~~~l~~~l 304 (1399)
........-......+.+.... .++++++|+|++...+.+. +..+...+
T Consensus 246 ----rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lL 297 (459)
T PRK11331 246 ----RPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLM 297 (459)
T ss_pred ----CCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhc
Confidence 1111110000011222222222 2468999999996544332 44444433
No 119
>PF14516 AAA_35: AAA-like domain
Probab=97.78 E-value=0.0022 Score=73.39 Aligned_cols=201 Identities=12% Similarity=0.082 Sum_probs=117.7
Q ss_pred CccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCc-----cCHHH
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQ-----FDVLR 246 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-----~~~~~ 246 (1399)
+..|+|...-+++.+.+..+ ...+.|.|+-.+|||+|...+.+..+. ..| .++++++... .+..+
T Consensus 11 ~~Yi~R~~~e~~~~~~i~~~--------G~~~~I~apRq~GKTSll~~l~~~l~~-~~~-~~v~id~~~~~~~~~~~~~~ 80 (331)
T PF14516_consen 11 PFYIERPPAEQECYQEIVQP--------GSYIRIKAPRQMGKTSLLLRLLERLQQ-QGY-RCVYIDLQQLGSAIFSDLEQ 80 (331)
T ss_pred CcccCchHHHHHHHHHHhcC--------CCEEEEECcccCCHHHHHHHHHHHHHH-CCC-EEEEEEeecCCCcccCCHHH
Confidence 34578987777777777653 358999999999999999999874332 233 3557776542 23444
Q ss_pred HHH----HHHHHccCCCC------CCCcchHHHHHHHHHHh---cCcceEEEecCCcCCCc--chhhhhhcccC----CC
Q 040015 247 VTT----TILKSVTSKPA------DVDDDLNLLQVCLREKL---AGKKFLLVLDDVWSRRN--DDWDLICSPLK----AG 307 (1399)
Q Consensus 247 ~~~----~i~~~l~~~~~------~~~~~~~~l~~~l~~~l---~~~r~LlvlDdv~~~~~--~~~~~l~~~l~----~~ 307 (1399)
.++ .+.+++..... ............+.+.+ .+++.+|++|+++.--. ...+++...++ ..
T Consensus 81 f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~ 160 (331)
T PF14516_consen 81 FLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQR 160 (331)
T ss_pred HHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhc
Confidence 444 44455543321 00111233444455543 26899999999954211 11122222221 11
Q ss_pred C----CCcEEEEEcCChh--hHHh-----cCccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCc
Q 040015 308 A----RGSKIIITTRDSS--IAAS-----MGTVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGL 376 (1399)
Q Consensus 308 ~----~gs~ilvTtR~~~--v~~~-----~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~ 376 (1399)
. ...-.+|...... .... +.....++|++++.+|...|..++...- . ....++|...+||+
T Consensus 161 ~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~-----~---~~~~~~l~~~tgGh 232 (331)
T PF14516_consen 161 KNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEF-----S---QEQLEQLMDWTGGH 232 (331)
T ss_pred ccCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccC-----C---HHHHHHHHHHHCCC
Confidence 1 1111222222211 1111 1123578999999999999987764211 1 12288999999999
Q ss_pred hhHHHHHHHHHhcC
Q 040015 377 LLAVKRMGIILRSR 390 (1399)
Q Consensus 377 PLai~~~~~~l~~~ 390 (1399)
|.-+..++..+..+
T Consensus 233 P~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 233 PYLVQKACYLLVEE 246 (331)
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999999764
No 120
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.77 E-value=0.00055 Score=71.52 Aligned_cols=126 Identities=24% Similarity=0.285 Sum_probs=73.4
Q ss_pred CCCCCccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHH
Q 040015 168 LVDESCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRV 247 (1399)
Q Consensus 168 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 247 (1399)
.+.-..++|.|.+++.|++-...-- .+....-+.+||..|+|||++++++.+.-..++ .--|.|.+.
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl---~G~pannvLL~G~rGtGKSSlVkall~~y~~~G----LRlIev~k~------ 89 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFL---QGLPANNVLLWGARGTGKSSLVKALLNEYADQG----LRLIEVSKE------ 89 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHH---cCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC----ceEEEECHH------
Confidence 3445679999999988876543321 112345677899999999999999987322111 112233221
Q ss_pred HHHHHHHccCCCCCCCcchHHHHHHHHHHhcCcceEEEecCCcCCC-cchhhhhhcccCCC----CCCcEEEEEcCChhh
Q 040015 248 TTTILKSVTSKPADVDDDLNLLQVCLREKLAGKKFLLVLDDVWSRR-NDDWDLICSPLKAG----ARGSKIIITTRDSSI 322 (1399)
Q Consensus 248 ~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~~r~LlvlDdv~~~~-~~~~~~l~~~l~~~----~~gs~ilvTtR~~~v 322 (1399)
+.. ++..+...++. ...||+|++||+.-+. ...+..+++.+..+ .....|..||-.++.
T Consensus 90 -------------~L~-~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHL 153 (249)
T PF05673_consen 90 -------------DLG-DLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHL 153 (249)
T ss_pred -------------Hhc-cHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhc
Confidence 111 13444444442 3579999999985433 34567777766543 223344455544443
No 121
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.76 E-value=0.00037 Score=82.76 Aligned_cols=169 Identities=11% Similarity=0.054 Sum_probs=101.3
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHHHHccCCCCCCCcchHHHHHHHHHHhcC
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTILKSVTSKPADVDDDLNLLQVCLREKLAG 279 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~ 279 (1399)
..-+.|+|..|+|||.|++++++.......-..+++++ ..++..++...+.... +. ...+++.++
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~------~~~f~~~~~~~l~~~~-------~~-~~~~~~~~~- 205 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS------GDEFARKAVDILQKTH-------KE-IEQFKNEIC- 205 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE------HHHHHHHHHHHHHHhh-------hH-HHHHHHHhc-
Confidence 34688999999999999999988322111112334443 3456666666554210 11 122333333
Q ss_pred cceEEEecCCcCCCc-chh-hhhhcccCC-CCCCcEEEEEcCCh---------hhHHhcCccceEeCCCCCccchHHHHH
Q 040015 280 KKFLLVLDDVWSRRN-DDW-DLICSPLKA-GARGSKIIITTRDS---------SIAASMGTVAAHHLECLAFEDCSSIFM 347 (1399)
Q Consensus 280 ~r~LlvlDdv~~~~~-~~~-~~l~~~l~~-~~~gs~ilvTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~ 347 (1399)
..-+||+||+..... ..+ +.+...+.. ...|..||+|+... .+...+...-++.+++++.++-.+++.
T Consensus 206 ~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~ 285 (450)
T PRK14087 206 QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIK 285 (450)
T ss_pred cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHH
Confidence 345889999965432 122 233333321 12345788887542 233334455688899999999999999
Q ss_pred HhhhcCCCCCCCccHHHHHHHHHHHccCchhHHHHHHH
Q 040015 348 NQAFENRNTGISPDLETIGAEIVNKCEGLLLAVKRMGI 385 (1399)
Q Consensus 348 ~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~ 385 (1399)
+++-..+. ...-.+++..-|++.++|.|-.+.-+..
T Consensus 286 ~~~~~~gl--~~~l~~evl~~Ia~~~~gd~R~L~gaL~ 321 (450)
T PRK14087 286 KEIKNQNI--KQEVTEEAINFISNYYSDDVRKIKGSVS 321 (450)
T ss_pred HHHHhcCC--CCCCCHHHHHHHHHccCCCHHHHHHHHH
Confidence 88753221 0123356789999999999987765543
No 122
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.75 E-value=0.00062 Score=83.39 Aligned_cols=193 Identities=13% Similarity=0.138 Sum_probs=109.9
Q ss_pred CccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHH
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTI 251 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 251 (1399)
.+++|.+..++.+..++..+. -...+.++|+.|+||||+|+.+++..--....+ .+ .+-......
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~r------l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~--~~-------~pC~~C~~~ 82 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNK------ISHAYLFSGPRGTGKTSVAKIFANALNCSHKTD--LL-------EPCQECIEN 82 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCC------CCeEEEEECCCCCcHHHHHHHHHHHhcccccCC--CC-------CchhHHHHh
Confidence 468999999999999997543 245667999999999999999986311000000 00 000000000
Q ss_pred HH------HccCCCCCCCcchHHHHHHHHHH-hcCcceEEEecCCcCCCcchhhhhhcccCCCCCCcEEE-EEcCChhhH
Q 040015 252 LK------SVTSKPADVDDDLNLLQVCLREK-LAGKKFLLVLDDVWSRRNDDWDLICSPLKAGARGSKII-ITTRDSSIA 323 (1399)
Q Consensus 252 ~~------~l~~~~~~~~~~~~~l~~~l~~~-l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~il-vTtR~~~v~ 323 (1399)
.. .+........+.++++++.+... ..+++-++|+|++..-....+..+...+......+.+| +|++...+.
T Consensus 83 ~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl 162 (725)
T PRK07133 83 VNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIP 162 (725)
T ss_pred hcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhh
Confidence 00 00000000011123333322221 23566689999997655567777777665544455544 455545554
Q ss_pred Hhc-CccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCchhHHHHH
Q 040015 324 ASM-GTVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLLLAVKRM 383 (1399)
Q Consensus 324 ~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 383 (1399)
..+ .....+++.+++.++....+...+-..+. ....+.++.|++.++|.+--+..+
T Consensus 163 ~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI----~id~eAl~~LA~lS~GslR~Alsl 219 (725)
T PRK07133 163 LTILSRVQRFNFRRISEDEIVSRLEFILEKENI----SYEKNALKLIAKLSSGSLRDALSI 219 (725)
T ss_pred HHHHhhceeEEccCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 332 33468999999999998888776543221 112345778999999977544333
No 123
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.72 E-value=0.00077 Score=82.37 Aligned_cols=202 Identities=13% Similarity=0.137 Sum_probs=112.1
Q ss_pred CccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEE-eCCccCHHHHHHH
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVC-VSDQFDVLRVTTT 250 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~ 250 (1399)
.++||-+..++.|..++..+. -...+.++|+.|+||||+|+.+++...-...++...|-. +...+..-...+.
T Consensus 16 ~eivGQe~i~~~L~~~i~~~r------i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~ 89 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDR------VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRD 89 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCC------CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHH
Confidence 468999999999999886543 234578999999999999999886321111111001110 0011111112222
Q ss_pred HHHHccCCC---CC-CCcchHHHHHHHHHH----hcCcceEEEecCCcCCCcchhhhhhcccCCCCCCcEEEE-EcCChh
Q 040015 251 ILKSVTSKP---AD-VDDDLNLLQVCLREK----LAGKKFLLVLDDVWSRRNDDWDLICSPLKAGARGSKIII-TTRDSS 321 (1399)
Q Consensus 251 i~~~l~~~~---~~-~~~~~~~l~~~l~~~----l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv-TtR~~~ 321 (1399)
+...-.... +. ....++++...+... ..+++-++|+|+++.-.....+.+...+..-...+.+|+ |++...
T Consensus 90 ~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~k 169 (620)
T PRK14954 90 FDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHK 169 (620)
T ss_pred HhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhh
Confidence 211100000 00 011133333322222 234556889999976555567777777765545565554 444444
Q ss_pred hHHhc-CccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCchh-HHHHH
Q 040015 322 IAASM-GTVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLLL-AVKRM 383 (1399)
Q Consensus 322 v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~ 383 (1399)
+...+ .....+++.+++.++....+.+.+...+. .-..+.++.|++.++|..- |+..+
T Consensus 170 Ll~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi----~I~~eal~~La~~s~Gdlr~al~eL 229 (620)
T PRK14954 170 IPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGI----QIDADALQLIARKAQGSMRDAQSIL 229 (620)
T ss_pred hhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHhCCCHHHHHHHH
Confidence 44332 34478999999999988877765543221 1123567889999999665 44433
No 124
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.72 E-value=0.00031 Score=86.83 Aligned_cols=197 Identities=10% Similarity=0.104 Sum_probs=112.9
Q ss_pred CccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHH
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTI 251 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 251 (1399)
.++||.+..++.|..++.... -...+.++|..|+||||+|+.+++...-.... .....++.-...+.+
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~------i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~------~~~~~c~~c~~c~~i 83 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGR------VAHAYLFTGPRGVGKTSTARILAKAVNCTTND------PKGRPCGTCEMCRAI 83 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCC------CceEEEEECCCCCCHHHHHHHHHHHhcCCCCC------CCCCCCccCHHHHHH
Confidence 468999999999998886542 24567899999999999999998632100000 000111112233333
Q ss_pred HHHccCCC---CC-CCcchHHHHHHH---HHH-hcCcceEEEecCCcCCCcchhhhhhcccCCCCCCcEEEEEcCC-hhh
Q 040015 252 LKSVTSKP---AD-VDDDLNLLQVCL---REK-LAGKKFLLVLDDVWSRRNDDWDLICSPLKAGARGSKIIITTRD-SSI 322 (1399)
Q Consensus 252 ~~~l~~~~---~~-~~~~~~~l~~~l---~~~-l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v 322 (1399)
........ .. .....+++...+ ... ..+++-++|+|++..-..+..+.+...+......+.+|++|.+ ..+
T Consensus 84 ~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kl 163 (585)
T PRK14950 84 AEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKV 163 (585)
T ss_pred hcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhh
Confidence 32221110 00 001123322221 111 1245668999999665545667776666554456666665543 333
Q ss_pred HHhc-CccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCchhHHHHHH
Q 040015 323 AASM-GTVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLLLAVKRMG 384 (1399)
Q Consensus 323 ~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~ 384 (1399)
...+ .....+++++++.++....+.+.+...+. .-..+.+..|++.++|.+..+...-
T Consensus 164 l~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl----~i~~eal~~La~~s~Gdlr~al~~L 222 (585)
T PRK14950 164 PATILSRCQRFDFHRHSVADMAAHLRKIAAAEGI----NLEPGALEAIARAATGSMRDAENLL 222 (585)
T ss_pred hHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3322 23357889999999888888777644322 1123567899999999996555443
No 125
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.72 E-value=0.00095 Score=72.23 Aligned_cols=197 Identities=15% Similarity=0.120 Sum_probs=117.6
Q ss_pred hHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCcccc----ccccceEEEEeCCccCHHHHHHHHHHH
Q 040015 179 NDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVD----GRFDLKVWVCVSDQFDVLRVTTTILKS 254 (1399)
Q Consensus 179 ~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~ 254 (1399)
+.++++.+++..+. ....+-+.|||.+|.|||++++++.+..-.. ..--.++.|.+....+...++..|+.+
T Consensus 44 ~~L~~L~~Ll~~P~----~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~ 119 (302)
T PF05621_consen 44 EALDRLEELLEYPK----RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEA 119 (302)
T ss_pred HHHHHHHHHHhCCc----ccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHH
Confidence 45667777776543 3456779999999999999999998531111 111257778888899999999999999
Q ss_pred ccCCCCCCCcchHHHHHHHHHHhcC-cceEEEecCCcCCCc---chhhh---hhcccCCCCCCcEEEEEcCChhhHHhc-
Q 040015 255 VTSKPADVDDDLNLLQVCLREKLAG-KKFLLVLDDVWSRRN---DDWDL---ICSPLKAGARGSKIIITTRDSSIAASM- 326 (1399)
Q Consensus 255 l~~~~~~~~~~~~~l~~~l~~~l~~-~r~LlvlDdv~~~~~---~~~~~---l~~~l~~~~~gs~ilvTtR~~~v~~~~- 326 (1399)
++.+...... ...+...+.+.++. +-=+||+|.+.+--. .+-.. ....+...-.=+-|.|-|++.--+-..
T Consensus 120 lgaP~~~~~~-~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D 198 (302)
T PF05621_consen 120 LGAPYRPRDR-VAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTD 198 (302)
T ss_pred hCcccCCCCC-HHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccC
Confidence 9988755544 55555555555543 233889999965211 11122 222333333445666766643222111
Q ss_pred ----CccceEeCCCCCcc-chHHHHHHhhhc--CCCCCCCccHHHHHHHHHHHccCchhHHH
Q 040015 327 ----GTVAAHHLECLAFE-DCSSIFMNQAFE--NRNTGISPDLETIGAEIVNKCEGLLLAVK 381 (1399)
Q Consensus 327 ----~~~~~~~l~~L~~~-~~~~lf~~~a~~--~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 381 (1399)
....++.++.-..+ +...|+...... -..+. .-...++++.|.+.++|+.=-+.
T Consensus 199 ~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S-~l~~~~la~~i~~~s~G~iG~l~ 259 (302)
T PF05621_consen 199 PQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPS-NLASPELARRIHERSEGLIGELS 259 (302)
T ss_pred HHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCC-CCCCHHHHHHHHHHcCCchHHHH
Confidence 12245666665544 444454332211 11111 12346789999999999874443
No 126
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.71 E-value=0.00073 Score=79.35 Aligned_cols=178 Identities=14% Similarity=0.214 Sum_probs=104.7
Q ss_pred CccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCcccc------ccccceEEEEeCCccCHH
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVD------GRFDLKVWVCVSDQFDVL 245 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~------~~f~~~~wv~~~~~~~~~ 245 (1399)
.+++|.+..++.+...+..+. -.+.+.++|+.|+||||+|+.+.+...-. ..|...+ +.+...
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~------~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~-~~l~~~---- 85 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNH------LAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNI-FELDAA---- 85 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCC------CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcce-EEeccc----
Confidence 457999999999999996543 24588899999999999999997732110 1121111 111100
Q ss_pred HHHHHHHHHccCCCCCCCcchHHHHHHHHHH----hcCcceEEEecCCcCCCcchhhhhhcccCCCCCCcEEEEEc-CCh
Q 040015 246 RVTTTILKSVTSKPADVDDDLNLLQVCLREK----LAGKKFLLVLDDVWSRRNDDWDLICSPLKAGARGSKIIITT-RDS 320 (1399)
Q Consensus 246 ~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~----l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTt-R~~ 320 (1399)
.. ...+++...+.+. ..+++-++|+|++..-....++.+...+......+.+|++| +..
T Consensus 86 ---------------~~-~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~ 149 (367)
T PRK14970 86 ---------------SN-NSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKH 149 (367)
T ss_pred ---------------cC-CCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcc
Confidence 00 0022222222111 12445589999986544445666665554433445555554 333
Q ss_pred hhHHhc-CccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCchhHH
Q 040015 321 SIAASM-GTVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLLLAV 380 (1399)
Q Consensus 321 ~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 380 (1399)
.+...+ .....++.+++++++....+...+...+. . -..+.+..|++.++|.+-.+
T Consensus 150 kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~-~---i~~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 150 KIIPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGI-K---FEDDALHIIAQKADGALRDA 206 (367)
T ss_pred cCCHHHHhcceeEecCCccHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHhCCCCHHHH
Confidence 333222 23357899999999998888877754322 1 12356788899999876533
No 127
>CHL00181 cbbX CbbX; Provisional
Probab=97.69 E-value=0.00092 Score=74.36 Aligned_cols=136 Identities=13% Similarity=0.060 Sum_probs=73.0
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHHHHccCCCCCCCcchHHHHHHHHHHhcC
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTILKSVTSKPADVDDDLNLLQVCLREKLAG 279 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~ 279 (1399)
...+.++|++|+||||+|+.+++.....+.-...-|+.++. .. +...+.+.. .......+.+.
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~----~~----l~~~~~g~~------~~~~~~~l~~a--- 121 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR----DD----LVGQYIGHT------APKTKEVLKKA--- 121 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH----HH----HHHHHhccc------hHHHHHHHHHc---
Confidence 34578999999999999999976321111111122455542 12 222222111 11122222222
Q ss_pred cceEEEecCCcCC---------CcchhhhhhcccCCCCCCcEEEEEcCChhhHHhc--------CccceEeCCCCCccch
Q 040015 280 KKFLLVLDDVWSR---------RNDDWDLICSPLKAGARGSKIIITTRDSSIAASM--------GTVAAHHLECLAFEDC 342 (1399)
Q Consensus 280 ~r~LlvlDdv~~~---------~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~--------~~~~~~~l~~L~~~~~ 342 (1399)
..-+|++|++..- ..+..+.+...+.....+.+||+++....+.... .-...+.+++++.++.
T Consensus 122 ~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el 201 (287)
T CHL00181 122 MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEEL 201 (287)
T ss_pred cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHH
Confidence 2349999999531 1122233444444444556777777543332111 1235789999999999
Q ss_pred HHHHHHhhhc
Q 040015 343 SSIFMNQAFE 352 (1399)
Q Consensus 343 ~~lf~~~a~~ 352 (1399)
.+++...+-.
T Consensus 202 ~~I~~~~l~~ 211 (287)
T CHL00181 202 LQIAKIMLEE 211 (287)
T ss_pred HHHHHHHHHH
Confidence 9988877643
No 128
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.69 E-value=0.00085 Score=81.34 Aligned_cols=199 Identities=11% Similarity=0.073 Sum_probs=114.8
Q ss_pred CccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHH
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTI 251 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 251 (1399)
.++||.+..++.|..++..+. -...+.++|+.|+||||+|+.+++...-....+ + ..++.-...+.+
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r------~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---~----~pCg~C~~C~~i 79 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGR------INHAYLFSGPRGCGKTSSARILARSLNCAQGPT---A----TPCGVCESCVAL 79 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCC------CCeEEEEECCCCCCHHHHHHHHHHHhccccCCC---C----CcccccHHHHHh
Confidence 468999999999999996543 244578999999999999999986321000000 0 001111111111
Q ss_pred HHH---------ccCCCCCCCcchHHHHHHHHHH-hcCcceEEEecCCcCCCcchhhhhhcccCCCCCCcEEEE-EcCCh
Q 040015 252 LKS---------VTSKPADVDDDLNLLQVCLREK-LAGKKFLLVLDDVWSRRNDDWDLICSPLKAGARGSKIII-TTRDS 320 (1399)
Q Consensus 252 ~~~---------l~~~~~~~~~~~~~l~~~l~~~-l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv-TtR~~ 320 (1399)
... +........+.+.++...+... ..+++-++|+|++..-.....+.+...+........+|+ ||...
T Consensus 80 ~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~ 159 (584)
T PRK14952 80 APNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPE 159 (584)
T ss_pred hcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChH
Confidence 110 0000000111122332222211 135556899999977666777788777766555666555 54445
Q ss_pred hhHHhc-CccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCchh-HHHHHHHHH
Q 040015 321 SIAASM-GTVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLLL-AVKRMGIIL 387 (1399)
Q Consensus 321 ~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~~~~l 387 (1399)
.+...+ +....+++.+++.++..+.+.+.+...+. .-..+....|++.++|.+- |+..+-.++
T Consensus 160 kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi----~i~~~al~~Ia~~s~GdlR~aln~Ldql~ 224 (584)
T PRK14952 160 KVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGV----VVDDAVYPLVIRAGGGSPRDTLSVLDQLL 224 (584)
T ss_pred hhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 444432 33478999999999988888776643321 1123456788999999885 444444443
No 129
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.68 E-value=0.00076 Score=80.14 Aligned_cols=182 Identities=14% Similarity=0.157 Sum_probs=107.4
Q ss_pred CccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCcccc---------------------ccc
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVD---------------------GRF 230 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~---------------------~~f 230 (1399)
.+++|.+..++.+..++.... -...+.++|+.|+||||+|+.+++...-. .++
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~------i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~ 90 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNR------AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSL 90 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCC------CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCC
Confidence 468999999999999996543 23567899999999999999997631100 011
Q ss_pred cceEEEEeCCccCHHHHHHHHHHHccCCCCCCCcchHHHHHHHHHH-hcCcceEEEecCCcCCCcchhhhhhcccCCCCC
Q 040015 231 DLKVWVCVSDQFDVLRVTTTILKSVTSKPADVDDDLNLLQVCLREK-LAGKKFLLVLDDVWSRRNDDWDLICSPLKAGAR 309 (1399)
Q Consensus 231 ~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~-l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~ 309 (1399)
+ |+.+... .....+++.++.+.+... ..+++-++|+|++..-..+..+.+...+.....
T Consensus 91 d---~~~i~g~-----------------~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~ 150 (451)
T PRK06305 91 D---VLEIDGA-----------------SHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQ 150 (451)
T ss_pred c---eEEeecc-----------------ccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCC
Confidence 1 1111100 000001122222222111 135667899999865444456666666655445
Q ss_pred CcEEEEEcC-ChhhHHhc-CccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCchh-HHHHH
Q 040015 310 GSKIIITTR-DSSIAASM-GTVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLLL-AVKRM 383 (1399)
Q Consensus 310 gs~ilvTtR-~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~ 383 (1399)
+..+|++|. ...+...+ .....++++++++++....+.+.+-..+. .-..+.+..|++.++|.+- |+..+
T Consensus 151 ~~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~----~i~~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 151 HVKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGI----ETSREALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred CceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 666666653 33333222 23467999999999988888776543221 1223567889999999774 44433
No 130
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.68 E-value=0.00026 Score=90.72 Aligned_cols=183 Identities=14% Similarity=0.109 Sum_probs=96.8
Q ss_pred CccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCcc---ccc-cccceEE-EEeCCccCHHH
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSR---VDG-RFDLKVW-VCVSDQFDVLR 246 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~---~~~-~f~~~~w-v~~~~~~~~~~ 246 (1399)
..+|||+.++++++..|.... ..-+.++|.+|+||||+|+.+++... +.. -.+..+| +.++.-
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~-------~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l----- 254 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRR-------QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLL----- 254 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCC-------cCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhh-----
Confidence 468999999999999996653 33456999999999999999987421 111 1123333 222210
Q ss_pred HHHHHHHHccCCCCCCCcchHHHHHHHHHHh-cCcceEEEecCCcCCC-------cchhh-hhhcccCCCCCCcEEEEEc
Q 040015 247 VTTTILKSVTSKPADVDDDLNLLQVCLREKL-AGKKFLLVLDDVWSRR-------NDDWD-LICSPLKAGARGSKIIITT 317 (1399)
Q Consensus 247 ~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l-~~~r~LlvlDdv~~~~-------~~~~~-~l~~~l~~~~~gs~ilvTt 317 (1399)
........+-.+.+...+.+.- .+++.+|++|++..-. ..+-. .+...+.. ..-++|-||
T Consensus 255 ---------~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~--G~l~~IgaT 323 (852)
T TIGR03345 255 ---------QAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALAR--GELRTIAAT 323 (852)
T ss_pred ---------hcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhC--CCeEEEEec
Confidence 0000001110223333333332 2568999999985421 11111 12222222 134566666
Q ss_pred CChhhHHhc-------CccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCch
Q 040015 318 RDSSIAASM-------GTVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLL 377 (1399)
Q Consensus 318 R~~~v~~~~-------~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~P 377 (1399)
...+....+ .....+.+++++.++..+++....-.-.......-..+....+++.+.+..
T Consensus 324 T~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi 390 (852)
T TIGR03345 324 TWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYI 390 (852)
T ss_pred CHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccccc
Confidence 543322111 233689999999999999975443211110011122344556666665543
No 131
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.67 E-value=0.00075 Score=83.09 Aligned_cols=178 Identities=13% Similarity=0.165 Sum_probs=111.6
Q ss_pred CccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCcc---------------------ccccc
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSR---------------------VDGRF 230 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~---------------------~~~~f 230 (1399)
.+++|.+..++.|..++..+. -...+.++|+.|+||||+|+.++.... ...+|
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~------l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~ 90 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNK------LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSY 90 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCC------CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCC
Confidence 468999999999999997543 245678999999999999998876321 01122
Q ss_pred cceEEEEeCCccCHHHHHHHHHHHccCCCCCCCcchHHHHHHHHHH----hcCcceEEEecCCcCCCcchhhhhhcccCC
Q 040015 231 DLKVWVCVSDQFDVLRVTTTILKSVTSKPADVDDDLNLLQVCLREK----LAGKKFLLVLDDVWSRRNDDWDLICSPLKA 306 (1399)
Q Consensus 231 ~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~----l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~ 306 (1399)
+. ..+..+.... .+++...+.+. ..+++=++|+|++..-....++.+...+..
T Consensus 91 n~-~~ld~~~~~~----------------------vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEe 147 (614)
T PRK14971 91 NI-HELDAASNNS----------------------VDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEE 147 (614)
T ss_pred ce-EEecccccCC----------------------HHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhC
Confidence 21 1111111111 22332222211 124455889999977665677778777766
Q ss_pred CCCCcEEEE-EcCChhhHHhc-CccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCchhHHHH
Q 040015 307 GARGSKIII-TTRDSSIAASM-GTVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLLLAVKR 382 (1399)
Q Consensus 307 ~~~gs~ilv-TtR~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~ 382 (1399)
-..++.+|+ ||+...+...+ ....++++++++.++....+.+.+-..+- ....+.+..|++.++|..--+..
T Consensus 148 pp~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi----~i~~~al~~La~~s~gdlr~al~ 221 (614)
T PRK14971 148 PPSYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGI----TAEPEALNVIAQKADGGMRDALS 221 (614)
T ss_pred CCCCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHH
Confidence 555666555 54545554433 33468999999999999888876643321 11234578899999997754433
No 132
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.66 E-value=0.00027 Score=90.05 Aligned_cols=157 Identities=17% Similarity=0.210 Sum_probs=85.9
Q ss_pred CccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCc---cccccc-cceEEEEeCCccCHHHH
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDS---RVDGRF-DLKVWVCVSDQFDVLRV 247 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~---~~~~~f-~~~~wv~~~~~~~~~~~ 247 (1399)
..++||+++++++++.|.... ..-+.++|++|+|||++|+.+++.. .+...+ +..+|. + +...+
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~-------~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~----~~~~l 249 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRK-------KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-L----DMGSL 249 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCC-------CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-e----cHHHH
Confidence 368999999999999996553 3345699999999999999998742 111112 334442 1 11111
Q ss_pred HHHHHHHccCCCCCCCcchHHHHHHHHHHhcCcceEEEecCCcCCC---------cchhhhhhcccCCCCCCcEEEEEcC
Q 040015 248 TTTILKSVTSKPADVDDDLNLLQVCLREKLAGKKFLLVLDDVWSRR---------NDDWDLICSPLKAGARGSKIIITTR 318 (1399)
Q Consensus 248 ~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~~r~LlvlDdv~~~~---------~~~~~~l~~~l~~~~~gs~ilvTtR 318 (1399)
. ... . ...+..+.+...+.+.-..++.+|++|++..-. .+.-+.+...+..+ .-++|-+|.
T Consensus 250 ~----a~~---~-~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g--~i~~IgaTt 319 (731)
T TIGR02639 250 L----AGT---K-YRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSG--KLRCIGSTT 319 (731)
T ss_pred h----hhc---c-ccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCC--CeEEEEecC
Confidence 1 000 0 001102223333333223467899999985321 11122233333221 234555554
Q ss_pred ChhhHHh------c-CccceEeCCCCCccchHHHHHHhh
Q 040015 319 DSSIAAS------M-GTVAAHHLECLAFEDCSSIFMNQA 350 (1399)
Q Consensus 319 ~~~v~~~------~-~~~~~~~l~~L~~~~~~~lf~~~a 350 (1399)
..+.... + .....+++++++.++..+++....
T Consensus 320 ~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 320 YEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 3222111 1 123578999999999999998654
No 133
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.61 E-value=0.0012 Score=78.89 Aligned_cols=194 Identities=11% Similarity=0.105 Sum_probs=112.0
Q ss_pred CccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccc--cccccceEEEEeCCccCHHHHHH
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRV--DGRFDLKVWVCVSDQFDVLRVTT 249 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~--~~~f~~~~wv~~~~~~~~~~~~~ 249 (1399)
.++||-+..++.+..++.... -..++.++|+.|+||||+|+.+++..-- ...+. .+..-...+
T Consensus 14 deiiGqe~v~~~L~~~I~~gr------l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~---------pC~~C~~C~ 78 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNR------LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSST---------PCDTCIQCQ 78 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCC------CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCC---------CCcccHHHH
Confidence 468999999999999986543 2456689999999999999988763110 00000 000000000
Q ss_pred HHHHHccCCC---CCC-CcchHHHHHHHHHH----hcCcceEEEecCCcCCCcchhhhhhcccCCCCCCcEEEEEcCCh-
Q 040015 250 TILKSVTSKP---ADV-DDDLNLLQVCLREK----LAGKKFLLVLDDVWSRRNDDWDLICSPLKAGARGSKIIITTRDS- 320 (1399)
Q Consensus 250 ~i~~~l~~~~---~~~-~~~~~~l~~~l~~~----l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~- 320 (1399)
.+........ ... ....+++...+... ..+++-++|+|++..-..+..+.+...+......+++|++|.+.
T Consensus 79 ~~~~~~h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~ 158 (535)
T PRK08451 79 SALENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPL 158 (535)
T ss_pred HHhhcCCCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChh
Confidence 0000000000 000 00133333333221 12455688999997766667777777776555667767666553
Q ss_pred hhHHhc-CccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCchhHHHHHH
Q 040015 321 SIAASM-GTVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLLLAVKRMG 384 (1399)
Q Consensus 321 ~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~ 384 (1399)
.+...+ .....+++.+++.++....+.+.+-..+. .-..+.++.|++.++|.+.-+..+.
T Consensus 159 kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi----~i~~~Al~~Ia~~s~GdlR~alnlL 219 (535)
T PRK08451 159 KLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGV----SYEPEALEILARSGNGSLRDTLTLL 219 (535)
T ss_pred hCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCcHHHHHHHH
Confidence 222222 23468999999999998888776643321 1224567899999999996555443
No 134
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.59 E-value=0.00084 Score=74.80 Aligned_cols=133 Identities=12% Similarity=0.060 Sum_probs=71.6
Q ss_pred EEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHHHHccCCCCCCCcchHHHHHHHHHHhcCcc
Q 040015 202 VVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTILKSVTSKPADVDDDLNLLQVCLREKLAGKK 281 (1399)
Q Consensus 202 vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~~r 281 (1399)
-+.++|++|+|||++|+.+++.....+.....-|+.++. . +++..+.+.. .......+.+. ..
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~----~l~~~~~g~~------~~~~~~~~~~a---~~ 122 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----D----DLVGQYIGHT------APKTKEILKRA---MG 122 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----H----HHhHhhcccc------hHHHHHHHHHc---cC
Confidence 577999999999999987765321111111123444442 1 2222222211 11222223322 23
Q ss_pred eEEEecCCcCC---------CcchhhhhhcccCCCCCCcEEEEEcCChhhHHhcC--------ccceEeCCCCCccchHH
Q 040015 282 FLLVLDDVWSR---------RNDDWDLICSPLKAGARGSKIIITTRDSSIAASMG--------TVAAHHLECLAFEDCSS 344 (1399)
Q Consensus 282 ~LlvlDdv~~~---------~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~--------~~~~~~l~~L~~~~~~~ 344 (1399)
-+|+||++..- ..+.++.+...+.....+.+||+++.......... -...+++++++.+|-..
T Consensus 123 gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~ 202 (284)
T TIGR02880 123 GVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLV 202 (284)
T ss_pred cEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHH
Confidence 58999999521 11223445555544445667777765432221111 13568999999999999
Q ss_pred HHHHhhh
Q 040015 345 IFMNQAF 351 (1399)
Q Consensus 345 lf~~~a~ 351 (1399)
++.+.+-
T Consensus 203 I~~~~l~ 209 (284)
T TIGR02880 203 IAGLMLK 209 (284)
T ss_pred HHHHHHH
Confidence 9887763
No 135
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.58 E-value=0.00048 Score=79.22 Aligned_cols=146 Identities=17% Similarity=0.176 Sum_probs=83.1
Q ss_pred CccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHH
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTI 251 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 251 (1399)
.+++|.+...+.+..++..+. -..++.++|++|+|||++|+.+++.. ... ...++.+. ... ...++.
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~~------~~~~lll~G~~G~GKT~la~~l~~~~--~~~---~~~i~~~~-~~~-~~i~~~ 87 (316)
T PHA02544 21 DECILPAADKETFKSIVKKGR------IPNMLLHSPSPGTGKTTVAKALCNEV--GAE---VLFVNGSD-CRI-DFVRNR 87 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcCC------CCeEEEeeCcCCCCHHHHHHHHHHHh--Ccc---ceEeccCc-ccH-HHHHHH
Confidence 568999999999999997542 34677779999999999999998742 221 23344433 111 111111
Q ss_pred HHHccCCCCCCCcchHHHHHHHHH-HhcCcceEEEecCCcCC-CcchhhhhhcccCCCCCCcEEEEEcCChh-hHHhc-C
Q 040015 252 LKSVTSKPADVDDDLNLLQVCLRE-KLAGKKFLLVLDDVWSR-RNDDWDLICSPLKAGARGSKIIITTRDSS-IAASM-G 327 (1399)
Q Consensus 252 ~~~l~~~~~~~~~~~~~l~~~l~~-~l~~~r~LlvlDdv~~~-~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~~~~-~ 327 (1399)
+... ... .+.+.+-++|+||+... ..+..+.+...+.....++++|+||.... +...+ +
T Consensus 88 l~~~-----------------~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~s 150 (316)
T PHA02544 88 LTRF-----------------ASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRS 150 (316)
T ss_pred HHHH-----------------HHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHh
Confidence 1110 000 01234558899999654 22233344444444456778888886532 11111 1
Q ss_pred ccceEeCCCCCccchHHHHH
Q 040015 328 TVAAHHLECLAFEDCSSIFM 347 (1399)
Q Consensus 328 ~~~~~~l~~L~~~~~~~lf~ 347 (1399)
....+.++..+.++..+++.
T Consensus 151 R~~~i~~~~p~~~~~~~il~ 170 (316)
T PHA02544 151 RCRVIDFGVPTKEEQIEMMK 170 (316)
T ss_pred hceEEEeCCCCHHHHHHHHH
Confidence 22456666666666655544
No 136
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.57 E-value=4.7e-06 Score=76.36 Aligned_cols=90 Identities=19% Similarity=0.214 Sum_probs=54.1
Q ss_pred CCCCcccEEEecCCCCcccCcccCC-CCCCcEEeccCCccccccccccCCCCCcEEEccCCCCCCCcChhhccCCCCCEE
Q 040015 584 PRLKCLRVLSFSACRITALPDSVGD-LKHLRYLDLSRTAIKQLPDSTGNLCNLQSIILLECYSLSKLPTDLGNLTGLRHL 662 (1399)
Q Consensus 584 ~~l~~Lr~L~Ls~~~i~~lp~~i~~-L~~L~~L~Ls~n~i~~lP~~i~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L 662 (1399)
.+..+|...+|++|.+..+|+.|.. .+.++.|+|++|.|..+|..+..++.|+.|+++.| .+...|..|..|.+|-.|
T Consensus 50 ~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N-~l~~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 50 SKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFN-PLNAEPRVIAPLIKLDML 128 (177)
T ss_pred hCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccC-ccccchHHHHHHHhHHHh
Confidence 3445566666666666666555533 23566666666666666666666666666666666 555566666666666666
Q ss_pred EccCCcccccCc
Q 040015 663 RMSGSRLREMPM 674 (1399)
Q Consensus 663 ~l~~~~l~~lp~ 674 (1399)
+..+|.+..+|-
T Consensus 129 ds~~na~~eid~ 140 (177)
T KOG4579|consen 129 DSPENARAEIDV 140 (177)
T ss_pred cCCCCccccCcH
Confidence 666665555543
No 137
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.56 E-value=0.002 Score=77.09 Aligned_cols=184 Identities=14% Similarity=0.136 Sum_probs=107.9
Q ss_pred CccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccc--cc-----------------cccc
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRV--DG-----------------RFDL 232 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~--~~-----------------~f~~ 232 (1399)
.+++|-+..++.+..++.... -...+.++|+.|+||||+|+.++....- .. .|..
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~------i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d 89 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQR------VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPD 89 (486)
T ss_pred HHccChHHHHHHHHHHHHcCC------CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCc
Confidence 468899999999999996543 2446678999999999999998763110 00 0111
Q ss_pred eEEEEeCCccCHHHHHHHHHHHccCCCCCCCcchHHHHHHHHHH-hcCcceEEEecCCcCCCcchhhhhhcccCCCCCCc
Q 040015 233 KVWVCVSDQFDVLRVTTTILKSVTSKPADVDDDLNLLQVCLREK-LAGKKFLLVLDDVWSRRNDDWDLICSPLKAGARGS 311 (1399)
Q Consensus 233 ~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~-l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs 311 (1399)
.+++..+.... .++...+...+... ..+++-++|+|+++.-.....+.+...+.......
T Consensus 90 ~~eidaas~~g-------------------vd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~ 150 (486)
T PRK14953 90 LIEIDAASNRG-------------------IDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRT 150 (486)
T ss_pred EEEEeCccCCC-------------------HHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCe
Confidence 11121111000 01122222222111 13566699999996654456666766665544455
Q ss_pred EEEEEc-CChhhHHhc-CccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCchhHHHHHH
Q 040015 312 KIIITT-RDSSIAASM-GTVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLLLAVKRMG 384 (1399)
Q Consensus 312 ~ilvTt-R~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~ 384 (1399)
.+|++| +...+...+ .....+.+.+++.++....+.+.+-..+. ....+.+..|++.++|.+..+....
T Consensus 151 v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi----~id~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 151 IFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKI----EYEEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred EEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 555544 443443322 23357899999999988888776643321 1123456788899999876554443
No 138
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.56 E-value=0.00044 Score=80.95 Aligned_cols=181 Identities=14% Similarity=0.099 Sum_probs=96.9
Q ss_pred CCccccchhHHHHHHHHHhccCCC------CCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCH
Q 040015 171 ESCVYGRENDKNAIVELLMVEDDS------SSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDV 244 (1399)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 244 (1399)
..++.|+++.++++.+.+..+-.. -+-...+-|.++|++|+|||++|+.+++. .... |+.++.
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~--~~~~-----~i~v~~---- 198 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNAT-----FIRVVG---- 198 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHH--hCCC-----EEEeeh----
Confidence 346899999999999877431100 01123456889999999999999999983 2222 233321
Q ss_pred HHHHHHHHHHccCCCCCCCcchHHHHHHHHHHhcCcceEEEecCCcCCC-----------cchhhhhhccc---CC--CC
Q 040015 245 LRVTTTILKSVTSKPADVDDDLNLLQVCLREKLAGKKFLLVLDDVWSRR-----------NDDWDLICSPL---KA--GA 308 (1399)
Q Consensus 245 ~~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~~r~LlvlDdv~~~~-----------~~~~~~l~~~l---~~--~~ 308 (1399)
..+ .....+ .....+...+...-...+.+|+|||++.-. .+.+..+...+ .. ..
T Consensus 199 ~~l----~~~~~g------~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~ 268 (389)
T PRK03992 199 SEL----VQKFIG------EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPR 268 (389)
T ss_pred HHH----hHhhcc------chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCC
Confidence 111 111111 001122222222223456899999985420 01111222222 11 12
Q ss_pred CCcEEEEEcCChhhHH-hc-C---ccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCch
Q 040015 309 RGSKIIITTRDSSIAA-SM-G---TVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLL 377 (1399)
Q Consensus 309 ~gs~ilvTtR~~~v~~-~~-~---~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~P 377 (1399)
.+..||.||...+... .+ . -...+.+++.+.++-.++|..+..+..- ..... ...+++.+.|.-
T Consensus 269 ~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~-~~~~~----~~~la~~t~g~s 337 (389)
T PRK03992 269 GNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNL-ADDVD----LEELAELTEGAS 337 (389)
T ss_pred CCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCC-CCcCC----HHHHHHHcCCCC
Confidence 3567887886543221 11 1 2357899999999999999877643221 11122 345666666643
No 139
>PRK06620 hypothetical protein; Validated
Probab=97.53 E-value=0.0014 Score=69.51 Aligned_cols=136 Identities=15% Similarity=0.099 Sum_probs=79.9
Q ss_pred EEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHHHHccCCCCCCCcchHHHHHHHHHHhcCc
Q 040015 201 SVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTILKSVTSKPADVDDDLNLLQVCLREKLAGK 280 (1399)
Q Consensus 201 ~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~~ 280 (1399)
+.+.|+|++|+|||+|++.+++... . .++. ..+.. + +.. +.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~--~-----~~~~--~~~~~----------------------~-------~~~-~~ 85 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN--A-----YIIK--DIFFN----------------------E-------EIL-EK 85 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC--C-----EEcc--hhhhc----------------------h-------hHH-hc
Confidence 5789999999999999999887432 1 1111 00000 0 011 12
Q ss_pred ceEEEecCCcCCCcchhhhhhcccCCCCCCcEEEEEcCChh-------hHHhcCccceEeCCCCCccchHHHHHHhhhcC
Q 040015 281 KFLLVLDDVWSRRNDDWDLICSPLKAGARGSKIIITTRDSS-------IAASMGTVAAHHLECLAFEDCSSIFMNQAFEN 353 (1399)
Q Consensus 281 r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-------v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~ 353 (1399)
.-++++||+........-.+...+. ..|..||+|++.+. ....+...-+++++++++++-..++.+.+...
T Consensus 86 ~d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~ 163 (214)
T PRK06620 86 YNAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSIS 163 (214)
T ss_pred CCEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHc
Confidence 3578899995321111112222222 34668999987432 23333455689999999999888887766432
Q ss_pred CCCCCCccHHHHHHHHHHHccCchhHHH
Q 040015 354 RNTGISPDLETIGAEIVNKCEGLLLAVK 381 (1399)
Q Consensus 354 ~~~~~~~~~~~~~~~i~~~~~g~PLai~ 381 (1399)
. -.--+++..-|++.+.|.--.+.
T Consensus 164 ~----l~l~~ev~~~L~~~~~~d~r~l~ 187 (214)
T PRK06620 164 S----VTISRQIIDFLLVNLPREYSKII 187 (214)
T ss_pred C----CCCCHHHHHHHHHHccCCHHHHH
Confidence 1 11224667888888887665544
No 140
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.53 E-value=0.0015 Score=82.63 Aligned_cols=192 Identities=10% Similarity=0.063 Sum_probs=110.9
Q ss_pred CccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHH
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTI 251 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 251 (1399)
.++||.+..++.|..++.... -...+.++|..|+||||+|+.+++...-..... ...+..-...+.|
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~r------i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~-------~~pCg~C~sC~~~ 81 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGR------INHAYLFSGPRGCGKTSSARILARSLNCVEGPT-------STPCGECDSCVAL 81 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHHhCcccCCC-------CCCCcccHHHHHH
Confidence 468999999999999997543 234678999999999999999976321000000 0000000111111
Q ss_pred HHHc-------cCCCCCCCcchHHHHHHHHH----HhcCcceEEEecCCcCCCcchhhhhhcccCCCCCCcEEEEEcC-C
Q 040015 252 LKSV-------TSKPADVDDDLNLLQVCLRE----KLAGKKFLLVLDDVWSRRNDDWDLICSPLKAGARGSKIIITTR-D 319 (1399)
Q Consensus 252 ~~~l-------~~~~~~~~~~~~~l~~~l~~----~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR-~ 319 (1399)
...- ...... ...++++.....+ -..+++-++|||+++.-....++.|...+..-...+.+|++|. .
T Consensus 82 ~~g~~~~~dv~eidaas-~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~ 160 (824)
T PRK07764 82 APGGPGSLDVTEIDAAS-HGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEP 160 (824)
T ss_pred HcCCCCCCcEEEecccc-cCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCCh
Confidence 1110 000000 0013333221111 1235555889999977766778888888876656666665554 4
Q ss_pred hhhHHhc-CccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCchhHHH
Q 040015 320 SSIAASM-GTVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLLLAVK 381 (1399)
Q Consensus 320 ~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 381 (1399)
..+...+ .....|++..++.++..+.+.+..-..+. ....+....|++.++|.+..+.
T Consensus 161 ~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv----~id~eal~lLa~~sgGdlR~Al 219 (824)
T PRK07764 161 DKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGV----PVEPGVLPLVIRAGGGSVRDSL 219 (824)
T ss_pred hhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHH
Confidence 4454433 33478999999999888888765532221 1123456788999999885443
No 141
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.53 E-value=0.00083 Score=74.40 Aligned_cols=162 Identities=14% Similarity=0.124 Sum_probs=80.6
Q ss_pred ccccchhHHHHHHHHHhcc--------CCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCH
Q 040015 173 CVYGRENDKNAIVELLMVE--------DDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDV 244 (1399)
Q Consensus 173 ~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 244 (1399)
.++|.+..+++|.+..... .+-...+....+.++|++|+||||+|+.+++.....+.-....++.++..
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~--- 83 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA--- 83 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH---
Confidence 4788887776665433210 10112234567789999999999999999863110011111123333221
Q ss_pred HHHHHHHHHHccCCCCCCCcchHHHHHHHHHHhcCcceEEEecCCcCCC--------cchhhhhhcccCCCCCCcEEEEE
Q 040015 245 LRVTTTILKSVTSKPADVDDDLNLLQVCLREKLAGKKFLLVLDDVWSRR--------NDDWDLICSPLKAGARGSKIIIT 316 (1399)
Q Consensus 245 ~~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~~r~LlvlDdv~~~~--------~~~~~~l~~~l~~~~~gs~ilvT 316 (1399)
++ .....+ +........+.+. ..-+|++|++..-. .+..+.+...+........+|++
T Consensus 84 -~l----~~~~~g------~~~~~~~~~~~~a---~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila 149 (261)
T TIGR02881 84 -DL----VGEYIG------HTAQKTREVIKKA---LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILA 149 (261)
T ss_pred -Hh----hhhhcc------chHHHHHHHHHhc---cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEec
Confidence 11 111111 0012222222222 23489999996421 11233344444333333345555
Q ss_pred cCChhhHH------hc-Cc-cceEeCCCCCccchHHHHHHhhh
Q 040015 317 TRDSSIAA------SM-GT-VAAHHLECLAFEDCSSIFMNQAF 351 (1399)
Q Consensus 317 tR~~~v~~------~~-~~-~~~~~l~~L~~~~~~~lf~~~a~ 351 (1399)
+...+... .+ .. ...+.+++++.++-.+++.+.+.
T Consensus 150 ~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~ 192 (261)
T TIGR02881 150 GYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVK 192 (261)
T ss_pred CCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHH
Confidence 54332211 11 11 24578889999988888887664
No 142
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.53 E-value=0.0018 Score=79.82 Aligned_cols=198 Identities=11% Similarity=0.124 Sum_probs=112.3
Q ss_pred CccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHH
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTI 251 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 251 (1399)
.+++|.+..++.|..++.... -...+.++|..|+||||+|+.+++...-. ..+.. ....+..-...+.+
T Consensus 16 ~~liGq~~i~~~L~~~l~~~r------l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~-~~~~~----~~~~Cg~C~~C~~i 84 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNR------IAPAYLFTGPRGTGKTSSARILAKSLNCL-NSDKP----TPEPCGKCELCRAI 84 (620)
T ss_pred hhccChHHHHHHHHHHHHcCC------CCceEEEECCCCCChHHHHHHHHHHhcCC-CcCCC----CCCCCcccHHHHHH
Confidence 468999999999999987542 23567899999999999999998742111 00000 00111112223333
Q ss_pred HHHccCCC----CCCCcchHHHHHHHHHH----hcCcceEEEecCCcCCCcchhhhhhcccCCCCCCcEEEEEcCC-hhh
Q 040015 252 LKSVTSKP----ADVDDDLNLLQVCLREK----LAGKKFLLVLDDVWSRRNDDWDLICSPLKAGARGSKIIITTRD-SSI 322 (1399)
Q Consensus 252 ~~~l~~~~----~~~~~~~~~l~~~l~~~----l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v 322 (1399)
........ ......++++.+.+... ..+++-++|+|++..-..+.++.+...+........+|++|.+ ..+
T Consensus 85 ~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~l 164 (620)
T PRK14948 85 AAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRV 164 (620)
T ss_pred hcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhh
Confidence 22211100 00111133333333221 1245568999999765556777777777654445555544443 333
Q ss_pred HHhc-CccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCchhHHHHHH
Q 040015 323 AASM-GTVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLLLAVKRMG 384 (1399)
Q Consensus 323 ~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~ 384 (1399)
...+ .....+++..++.++....+.+.+...+. . -..+.+..|++.++|.+..+....
T Consensus 165 lpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi-~---is~~al~~La~~s~G~lr~A~~lL 223 (620)
T PRK14948 165 LPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESI-E---IEPEALTLVAQRSQGGLRDAESLL 223 (620)
T ss_pred hHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCC-C---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3322 23367888899988888777766543221 1 112457889999999886554433
No 143
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.52 E-value=0.00052 Score=74.84 Aligned_cols=169 Identities=21% Similarity=0.225 Sum_probs=101.5
Q ss_pred CCccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHH
Q 040015 171 ESCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTT 250 (1399)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 250 (1399)
++.|.+|+.+++.+..++...+ ..-...|.|+|..|.|||.+.+++.+... ...+|+++-+.++.+.++..
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~----~~~PS~~~iyG~sgTGKT~~~r~~l~~~n-----~~~vw~n~~ecft~~~lle~ 75 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNS----CTIPSIVHIYGHSGTGKTYLVRQLLRKLN-----LENVWLNCVECFTYAILLEK 75 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCC----cccceeEEEeccCCCchhHHHHHHHhhcC-----CcceeeehHHhccHHHHHHH
Confidence 4578899999999999996654 12345668999999999999999998542 23589999999999999999
Q ss_pred HHHHccCCCCCCCc------chHHHHHHHHH--Hhc--CcceEEEecCCcCCCc---chhhhhhcccCCCCCCcEEEEEc
Q 040015 251 ILKSVTSKPADVDD------DLNLLQVCLRE--KLA--GKKFLLVLDDVWSRRN---DDWDLICSPLKAGARGSKIIITT 317 (1399)
Q Consensus 251 i~~~l~~~~~~~~~------~~~~l~~~l~~--~l~--~~r~LlvlDdv~~~~~---~~~~~l~~~l~~~~~gs~ilvTt 317 (1399)
|+.+......+... ........+.+ ... ++.++||||+++.-.. .-+..+.....-.....-+|+++
T Consensus 76 IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils 155 (438)
T KOG2543|consen 76 ILNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILS 155 (438)
T ss_pred HHHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEe
Confidence 99998522111111 11222223333 122 4689999999954221 01111111100011122334444
Q ss_pred CChhh---HHhcCcc--ceEeCCCCCccchHHHHHH
Q 040015 318 RDSSI---AASMGTV--AAHHLECLAFEDCSSIFMN 348 (1399)
Q Consensus 318 R~~~v---~~~~~~~--~~~~l~~L~~~~~~~lf~~ 348 (1399)
-...- ...+|+. .++..+.-+.+|...++.+
T Consensus 156 ~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~ 191 (438)
T KOG2543|consen 156 APSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSR 191 (438)
T ss_pred ccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhc
Confidence 32211 1123433 3456667778888887754
No 144
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.51 E-value=0.00067 Score=71.87 Aligned_cols=189 Identities=17% Similarity=0.142 Sum_probs=115.5
Q ss_pred CCccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEE-EEeCCccCHHHHHH
Q 040015 171 ESCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVW-VCVSDQFDVLRVTT 249 (1399)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~w-v~~~~~~~~~~~~~ 249 (1399)
-.+++|-+..+..+...+... ..++...+|++|.|||+-|..+++..--..-|.+++- .++|..-... +.+
T Consensus 35 ~de~~gQe~vV~~L~~a~~~~-------~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis-vvr 106 (346)
T KOG0989|consen 35 FDELAGQEHVVQVLKNALLRR-------ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS-VVR 106 (346)
T ss_pred HHhhcchHHHHHHHHHHHhhc-------CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-chh
Confidence 356899999999999999763 3778999999999999999998874322334544332 3344332211 100
Q ss_pred HHHHHccCCCCCCCcchHHHHHHHHHHh--cCcc-eEEEecCCcCCCcchhhhhhcccCCCCCCcEEEEEcCC-hhhHHh
Q 040015 250 TILKSVTSKPADVDDDLNLLQVCLREKL--AGKK-FLLVLDDVWSRRNDDWDLICSPLKAGARGSKIIITTRD-SSIAAS 325 (1399)
Q Consensus 250 ~i~~~l~~~~~~~~~~~~~l~~~l~~~l--~~~r-~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~~~ 325 (1399)
+-.. +...+........ ..++ =.||||+++.-..+.|..+...+......++.++.+-. ..+...
T Consensus 107 ~Kik-----------~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~p 175 (346)
T KOG0989|consen 107 EKIK-----------NFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRP 175 (346)
T ss_pred hhhc-----------CHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChH
Confidence 0000 0111111000000 1123 36889999887788999999888877777775554443 222221
Q ss_pred c-CccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCchhHHHH
Q 040015 326 M-GTVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLLLAVKR 382 (1399)
Q Consensus 326 ~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~ 382 (1399)
+ +.-.-+..++|.+++...-+...|-.++.. -..+..+.|++.++|----+.+
T Consensus 176 i~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~----~d~~al~~I~~~S~GdLR~Ait 229 (346)
T KOG0989|consen 176 LVSRCQKFRFKKLKDEDIVDRLEKIASKEGVD----IDDDALKLIAKISDGDLRRAIT 229 (346)
T ss_pred HHhhHHHhcCCCcchHHHHHHHHHHHHHhCCC----CCHHHHHHHHHHcCCcHHHHHH
Confidence 1 122468889999999998888887554332 2234578899999986543333
No 145
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.51 E-value=0.0024 Score=75.99 Aligned_cols=159 Identities=16% Similarity=0.173 Sum_probs=92.2
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCccccccc--cceEEEEeCCccCHHHHHHHHHHHccCCCCCCCcchHHHHHHHHHHh
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSRVDGRF--DLKVWVCVSDQFDVLRVTTTILKSVTSKPADVDDDLNLLQVCLREKL 277 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l 277 (1399)
...+.|+|..|+|||.||+++++.. .... ..++++++ .+...++...+... ..+... +.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l--~~~~~~~~v~yi~~------~~~~~~~~~~~~~~------~~~~~~----~~~ 197 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEI--LENNPNAKVVYVSS------EKFTNDFVNALRNN------KMEEFK----EKY 197 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH--HHhCCCCcEEEEEH------HHHHHHHHHHHHcC------CHHHHH----HHH
Confidence 4568899999999999999999843 2222 23456543 23344455444321 123332 233
Q ss_pred cCcceEEEecCCcCCCcch-h-hhhhcccCC-CCCCcEEEEEcCCh-h--------hHHhcCccceEeCCCCCccchHHH
Q 040015 278 AGKKFLLVLDDVWSRRNDD-W-DLICSPLKA-GARGSKIIITTRDS-S--------IAASMGTVAAHHLECLAFEDCSSI 345 (1399)
Q Consensus 278 ~~~r~LlvlDdv~~~~~~~-~-~~l~~~l~~-~~~gs~ilvTtR~~-~--------v~~~~~~~~~~~l~~L~~~~~~~l 345 (1399)
++ .-+||+||+....... + +.+...+.. ...|..||+|+... . +...+....++.+++.+.++-..+
T Consensus 198 ~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~i 276 (405)
T TIGR00362 198 RS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAI 276 (405)
T ss_pred Hh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHH
Confidence 22 3489999996532221 1 223222211 12345677777642 2 222223335789999999999999
Q ss_pred HHHhhhcCCCCCCCccHHHHHHHHHHHccCchhHHH
Q 040015 346 FMNQAFENRNTGISPDLETIGAEIVNKCEGLLLAVK 381 (1399)
Q Consensus 346 f~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 381 (1399)
+.+.+..... .--+++...|++.+.|..-.+.
T Consensus 277 l~~~~~~~~~----~l~~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 277 LQKKAEEEGL----ELPDEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred HHHHHHHcCC----CCCHHHHHHHHHhcCCCHHHHH
Confidence 9888754321 1225678888999998776443
No 146
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.49 E-value=0.00063 Score=87.83 Aligned_cols=156 Identities=17% Similarity=0.162 Sum_probs=86.0
Q ss_pred CccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCcc---ccccc-cceEEEEeCCccCHHHH
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSR---VDGRF-DLKVWVCVSDQFDVLRV 247 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~---~~~~f-~~~~wv~~~~~~~~~~~ 247 (1399)
..++||+++++++++.|.... ..-+.++|.+|+|||++|+.++.... +.... +..+|. + +...+
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~-------~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l 246 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT-------KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLL 246 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc-------cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHH
Confidence 358999999999999997553 23456999999999999999987421 11111 344552 1 21111
Q ss_pred HHHHHHHccCCCCCCCcchHHHHHHHHHHhcCcceEEEecCCcCCC--------cchhhhhhcccCCCCCCcEEEEEcCC
Q 040015 248 TTTILKSVTSKPADVDDDLNLLQVCLREKLAGKKFLLVLDDVWSRR--------NDDWDLICSPLKAGARGSKIIITTRD 319 (1399)
Q Consensus 248 ~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~~r~LlvlDdv~~~~--------~~~~~~l~~~l~~~~~gs~ilvTtR~ 319 (1399)
+. +.. ...+-.+.+...+.+.-..++.+|++|++..-- .+.-+.+...+.. ..-++|.+|..
T Consensus 247 ~a-------g~~-~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~r--g~l~~IgaTt~ 316 (821)
T CHL00095 247 LA-------GTK-YRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALAR--GELQCIGATTL 316 (821)
T ss_pred hc-------cCC-CccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhC--CCcEEEEeCCH
Confidence 11 111 111112233333433334568899999984210 0111222222221 12456666655
Q ss_pred hhhHHh-------cCccceEeCCCCCccchHHHHHHh
Q 040015 320 SSIAAS-------MGTVAAHHLECLAFEDCSSIFMNQ 349 (1399)
Q Consensus 320 ~~v~~~-------~~~~~~~~l~~L~~~~~~~lf~~~ 349 (1399)
...... ......+.++..+.++...++...
T Consensus 317 ~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 317 DEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 443221 123456788888888888887653
No 147
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.43 E-value=2e-05 Score=72.42 Aligned_cols=98 Identities=22% Similarity=0.363 Sum_probs=58.8
Q ss_pred cccEEEecCCCCcccCcc---cCCCCCCcEEeccCCccccccccccC-CCCCcEEEccCCCCCCCcChhhccCCCCCEEE
Q 040015 588 CLRVLSFSACRITALPDS---VGDLKHLRYLDLSRTAIKQLPDSTGN-LCNLQSIILLECYSLSKLPTDLGNLTGLRHLR 663 (1399)
Q Consensus 588 ~Lr~L~Ls~~~i~~lp~~---i~~L~~L~~L~Ls~n~i~~lP~~i~~-L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~ 663 (1399)
.+..+||++|.+-.+++. +....+|...+|++|.++.+|..|.. .+.+.+|++++| .+..+|.++..++.|+.|+
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSLN 106 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhcc
Confidence 344566666665555443 34445555566666666666665543 336666666666 6666666666666666666
Q ss_pred ccCCcccccCccccCCCCCCccC
Q 040015 664 MSGSRLREMPMKMYKLKNLQTLS 686 (1399)
Q Consensus 664 l~~~~l~~lp~~i~~L~~L~~L~ 686 (1399)
++.|.+...|.-|..|.+|-.|+
T Consensus 107 l~~N~l~~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 107 LRFNPLNAEPRVIAPLIKLDMLD 129 (177)
T ss_pred cccCccccchHHHHHHHhHHHhc
Confidence 66666666666665555555443
No 148
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.43 E-value=0.0042 Score=74.71 Aligned_cols=157 Identities=11% Similarity=0.147 Sum_probs=91.8
Q ss_pred EEEEEEcCCCchHHHHHHHHhcCccccccc--cceEEEEeCCccCHHHHHHHHHHHccCCCCCCCcchHHHHHHHHHHhc
Q 040015 201 SVVPIVGMGGIGKTTVAQLVYNDSRVDGRF--DLKVWVCVSDQFDVLRVTTTILKSVTSKPADVDDDLNLLQVCLREKLA 278 (1399)
Q Consensus 201 ~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~ 278 (1399)
..+.|+|..|+|||.|++.+++.. ...+ ..++++.. .++..++...+... ..+. +++.+.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a--~~~~~g~~V~Yita------eef~~el~~al~~~------~~~~----f~~~y~ 376 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYA--RRLYPGTRVRYVSS------EEFTNEFINSIRDG------KGDS----FRRRYR 376 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHH--HHhCCCCeEEEeeH------HHHHHHHHHHHHhc------cHHH----HHHHhh
Confidence 458999999999999999999843 2222 23455543 33444444433211 0222 223333
Q ss_pred CcceEEEecCCcCCCc-chhh-hhhcccCC-CCCCcEEEEEcCCh---------hhHHhcCccceEeCCCCCccchHHHH
Q 040015 279 GKKFLLVLDDVWSRRN-DDWD-LICSPLKA-GARGSKIIITTRDS---------SIAASMGTVAAHHLECLAFEDCSSIF 346 (1399)
Q Consensus 279 ~~r~LlvlDdv~~~~~-~~~~-~l~~~l~~-~~~gs~ilvTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf 346 (1399)
. -=+|||||+..... +.|. .+...+.. ...|..|||||+.. .+...+...-+++|++.+.+.-.+++
T Consensus 377 ~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL 455 (617)
T PRK14086 377 E-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAIL 455 (617)
T ss_pred c-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHH
Confidence 2 34789999965432 2232 22222221 12355688888752 23334455678999999999999999
Q ss_pred HHhhhcCCCCCCCccHHHHHHHHHHHccCchhHH
Q 040015 347 MNQAFENRNTGISPDLETIGAEIVNKCEGLLLAV 380 (1399)
Q Consensus 347 ~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 380 (1399)
.+++....- .--++++.-|++.+.+..-.+
T Consensus 456 ~kka~~r~l----~l~~eVi~yLa~r~~rnvR~L 485 (617)
T PRK14086 456 RKKAVQEQL----NAPPEVLEFIASRISRNIREL 485 (617)
T ss_pred HHHHHhcCC----CCCHHHHHHHHHhccCCHHHH
Confidence 988754322 122466777888777665443
No 149
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.42 E-value=0.0032 Score=76.68 Aligned_cols=195 Identities=10% Similarity=0.091 Sum_probs=112.3
Q ss_pred CccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHH
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTI 251 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 251 (1399)
.+++|-+..++.+..++.... -...+.++|+.|+||||+|+.+++..--..... ...+... ...+++
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~------i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~---~~pC~~C----~~C~~i 82 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNK------IANAYIFSGPRGVGKTSSARAFARCLNCVNGPT---PMPCGEC----SSCKSI 82 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCC------CCeEEEEECCCCCCHHHHHHHHHHhhccccCCC---CCCCccc----hHHHHH
Confidence 468999999999999997543 345688999999999999999987421110000 0000000 001111
Q ss_pred HHHccCC---CCCC-CcchHHHHHHH---HH-HhcCcceEEEecCCcCCCcchhhhhhcccCCCCCCcEEEEEcCC-hhh
Q 040015 252 LKSVTSK---PADV-DDDLNLLQVCL---RE-KLAGKKFLLVLDDVWSRRNDDWDLICSPLKAGARGSKIIITTRD-SSI 322 (1399)
Q Consensus 252 ~~~l~~~---~~~~-~~~~~~l~~~l---~~-~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v 322 (1399)
...-... .... ....+++.... .. -..+++-++|+|++..-....++.+...+......+.+|++|.. ..+
T Consensus 83 ~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL 162 (563)
T PRK06647 83 DNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKL 162 (563)
T ss_pred HcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHh
Confidence 1110000 0000 01133332222 11 12355668999999766556677777777655556666665543 344
Q ss_pred HHhc-CccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCchhHHHHH
Q 040015 323 AASM-GTVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLLLAVKRM 383 (1399)
Q Consensus 323 ~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 383 (1399)
...+ .....+++++++.++....+.+.+...+. +-..+.+..|++.++|.+-.+...
T Consensus 163 ~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi----~id~eAl~lLa~~s~GdlR~alsl 220 (563)
T PRK06647 163 PATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQI----KYEDEALKWIAYKSTGSVRDAYTL 220 (563)
T ss_pred HHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 3322 23357899999999988888877644322 122456778999999988554433
No 150
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.38 E-value=0.00012 Score=90.63 Aligned_cols=113 Identities=25% Similarity=0.203 Sum_probs=60.3
Q ss_pred ccCCCCCEEEccCCcccccCccccCCCCCCccCceeeCCCCCCCccccccccccccEEEEcCCcCCCCH--hHHHHhhcC
Q 040015 654 GNLTGLRHLRMSGSRLREMPMKMYKLKNLQTLSHFVVGKDRGSGIKDLKEMQQLQGELVISGLQNVICF--TDAMEANLK 731 (1399)
Q Consensus 654 ~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~l~~L~~~l~i~~l~~~~~~--~~~~~~~l~ 731 (1399)
.++++|+.||+++++++.+ .++++|++|+.|...+........+.+|-+|++|+ .|.|+.-.+.... .......-.
T Consensus 170 ~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~-vLDIS~~~~~~~~~ii~qYlec~~ 247 (699)
T KOG3665|consen 170 ASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLR-VLDISRDKNNDDTKIIEQYLECGM 247 (699)
T ss_pred hccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCC-eeeccccccccchHHHHHHHHhcc
Confidence 3455555555555555444 44555555555554444433334444444444444 4444433332222 222233444
Q ss_pred CCCCCceEEEEecCCCCCCCCCCChhHHHHHHHhhccccccccCC
Q 040015 732 DKKELTQLVLQWSDDFGDSTNDGDEEEVFKVAQLHRNRKDLNASG 776 (1399)
Q Consensus 732 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~~ 776 (1399)
.+++|+.|+.+.+.. ++..+-....-|++++...+-+
T Consensus 248 ~LpeLrfLDcSgTdi--------~~~~le~ll~sH~~L~~i~~~~ 284 (699)
T KOG3665|consen 248 VLPELRFLDCSGTDI--------NEEILEELLNSHPNLQQIAALD 284 (699)
T ss_pred cCccccEEecCCcch--------hHHHHHHHHHhCccHhhhhhhh
Confidence 578999999986554 5555566777778877666554
No 151
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.36 E-value=3.8e-05 Score=82.35 Aligned_cols=92 Identities=17% Similarity=0.162 Sum_probs=55.3
Q ss_pred ccCCCCCcceeeecccCCcccc---cccccccCCccceeeeccchh---hhhhhhh-----hcccccccccEEEeecCCC
Q 040015 1034 STGGHRSLTYMRICQISKLDCL---VEGYFQHFTALEELQISHLAE---LMTLSNK-----IGLRSLLSLQRLEISECPY 1102 (1399)
Q Consensus 1034 ~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~l~~L~~L~l~~~~~---l~~~~~~-----~~~~~l~~L~~L~L~~~~~ 1102 (1399)
....+.+++++++++|..-... ....+.+.++|+..++++-.- ...++.. ..+..++.|++|+||+|-.
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 3456788889999988843332 222355566777777775421 0111111 1233566888888888864
Q ss_pred cccch----hhhhCCCCccEEEEecCC
Q 040015 1103 FKELP----EKFYELSTLKVLRISNCP 1125 (1399)
Q Consensus 1103 ~~~l~----~~~~~l~~L~~L~ls~c~ 1125 (1399)
-..-+ .-+.++++|++|.+.+|.
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~G 131 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCG 131 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCC
Confidence 43322 345677888888888875
No 152
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.34 E-value=3.5e-05 Score=95.36 Aligned_cols=37 Identities=24% Similarity=0.438 Sum_probs=18.0
Q ss_pred cceEEeccCCCCCCCccccccc-CCCccEEEEcCCCCc
Q 040015 1302 LISLSILDCENLKPSSEWGLHR-LTCLADFSFGGCQGL 1338 (1399)
Q Consensus 1302 L~~L~l~~c~~l~~~~~~~l~~-l~~L~~L~l~~~~~~ 1338 (1399)
++.|++..|...+......... +..+..+++++|..+
T Consensus 403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~ 440 (482)
T KOG1947|consen 403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVI 440 (482)
T ss_pred cceEecccCccccccchHHHhhhhhccccCCccCcccc
Confidence 5555555555544333222222 555566666665443
No 153
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.33 E-value=3.5e-05 Score=82.62 Aligned_cols=87 Identities=22% Similarity=0.209 Sum_probs=59.4
Q ss_pred CCCCcccEEEecCCCCc-----ccCcccCCCCCCcEEeccCCc----cccccc-------cccCCCCCcEEEccCCCCCC
Q 040015 584 PRLKCLRVLSFSACRIT-----ALPDSVGDLKHLRYLDLSRTA----IKQLPD-------STGNLCNLQSIILLECYSLS 647 (1399)
Q Consensus 584 ~~l~~Lr~L~Ls~~~i~-----~lp~~i~~L~~L~~L~Ls~n~----i~~lP~-------~i~~L~~L~~L~L~~~~~~~ 647 (1399)
..+..+..|+|++|.+. .+-+.+.+.++|+.-++|.-. ...+|+ .+-..++|++||||+|-.-.
T Consensus 27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 45677888888888764 244566777788888887521 224444 34556689999999884443
Q ss_pred CcChh----hccCCCCCEEEccCCccc
Q 040015 648 KLPTD----LGNLTGLRHLRMSGSRLR 670 (1399)
Q Consensus 648 ~lP~~----i~~L~~L~~L~l~~~~l~ 670 (1399)
.-++. +...+.|+||+|.+|.+.
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~Glg 133 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNCGLG 133 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcCCCC
Confidence 33333 556888999999988765
No 154
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.32 E-value=0.0042 Score=76.02 Aligned_cols=193 Identities=13% Similarity=0.124 Sum_probs=108.7
Q ss_pred CccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHH
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTI 251 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 251 (1399)
.+++|.+..++.+..++.... -...+.++|+.|+||||+|+.+++...-...-+ ...++.-...+.+
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~------~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~-------~~pC~~C~~C~~i 82 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGK------ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD-------GEPCNECEICKAI 82 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCC------CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCccHHHHHH
Confidence 468999999999999997653 245677899999999999999975311000000 0111111122222
Q ss_pred HHHccCCC----CCCCcchHHHH---HHHHHH-hcCcceEEEecCCcCCCcchhhhhhcccCCCCCCcEEEE-EcCChhh
Q 040015 252 LKSVTSKP----ADVDDDLNLLQ---VCLREK-LAGKKFLLVLDDVWSRRNDDWDLICSPLKAGARGSKIII-TTRDSSI 322 (1399)
Q Consensus 252 ~~~l~~~~----~~~~~~~~~l~---~~l~~~-l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv-TtR~~~v 322 (1399)
........ .......+++. ..+... ..+++-++|+|++..-....++.+...+........+|+ ||....+
T Consensus 83 ~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki 162 (559)
T PRK05563 83 TNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKI 162 (559)
T ss_pred hcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhC
Confidence 11110000 00001122222 222111 134566889999976555667777766655444555454 4444444
Q ss_pred HHhc-CccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCchhHHH
Q 040015 323 AASM-GTVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLLLAVK 381 (1399)
Q Consensus 323 ~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 381 (1399)
...+ +....+++.+++.++....+...+-..+. .-..+.+..|++.++|.+..+.
T Consensus 163 ~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi----~i~~~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 163 PATILSRCQRFDFKRISVEDIVERLKYILDKEGI----EYEDEALRLIARAAEGGMRDAL 218 (559)
T ss_pred cHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHH
Confidence 3332 23467889999999888888776643221 1123557788999998876544
No 155
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.32 E-value=0.0043 Score=69.96 Aligned_cols=196 Identities=13% Similarity=0.120 Sum_probs=111.8
Q ss_pred CccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccc-------------cccccceEEEEe
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRV-------------DGRFDLKVWVCV 238 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~-------------~~~f~~~~wv~~ 238 (1399)
.+++|.+..++.+...+..+. -.....++|+.|+||+++|..+++..-- ...+.-..|+.-
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r------l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p 77 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR------IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEP 77 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEec
Confidence 368999999999999996653 2468899999999999999888653100 111222344421
Q ss_pred CCccCHHHHHHHHHHHccC--CCCCCCcchHHHHHHHHHHh-----cCcceEEEecCCcCCCcchhhhhhcccCCCCCCc
Q 040015 239 SDQFDVLRVTTTILKSVTS--KPADVDDDLNLLQVCLREKL-----AGKKFLLVLDDVWSRRNDDWDLICSPLKAGARGS 311 (1399)
Q Consensus 239 ~~~~~~~~~~~~i~~~l~~--~~~~~~~~~~~l~~~l~~~l-----~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs 311 (1399)
....+-..+-..-++..+. ...... .+++.. .+.+.+ .+++=++|+|++..-+....+.+...+..-. .+
T Consensus 78 ~~~~~g~~~~~~~~~~~~~~~~~~~~I-~id~ir-~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~ 154 (314)
T PRK07399 78 TYQHQGKLITASEAEEAGLKRKAPPQI-RLEQIR-EIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NG 154 (314)
T ss_pred cccccccccchhhhhhccccccccccC-cHHHHH-HHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CC
Confidence 1000000000111111110 000011 123322 233333 3556789999997666566777777665444 34
Q ss_pred EEEEEc-CChhhHHhc-CccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCchhHHHHH
Q 040015 312 KIIITT-RDSSIAASM-GTVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLLLAVKRM 383 (1399)
Q Consensus 312 ~ilvTt-R~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 383 (1399)
.+|++| +...+...+ +....+++.++++++..+.+.+...... .......++..++|.|..+...
T Consensus 155 ~fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~-------~~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 155 TLILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI-------LNINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred eEEEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc-------chhHHHHHHHHcCCCHHHHHHH
Confidence 455444 444444433 3447899999999999999987642111 0111357899999999766543
No 156
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.32 E-value=0.0044 Score=74.63 Aligned_cols=159 Identities=16% Similarity=0.178 Sum_probs=93.4
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCccccccc--cceEEEEeCCccCHHHHHHHHHHHccCCCCCCCcchHHHHHHHHHHh
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSRVDGRF--DLKVWVCVSDQFDVLRVTTTILKSVTSKPADVDDDLNLLQVCLREKL 277 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l 277 (1399)
..-+.|+|..|+|||+||+.+++. ....+ ..+++++.. ++..++...+... ..+.. .+.+
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~v~yi~~~------~~~~~~~~~~~~~------~~~~~----~~~~ 209 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNY--ILEKNPNAKVVYVTSE------KFTNDFVNALRNN------TMEEF----KEKY 209 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEEEHH------HHHHHHHHHHHcC------cHHHH----HHHH
Confidence 456889999999999999999984 33333 234455442 3334444444211 12222 2333
Q ss_pred cCcceEEEecCCcCCCcch-h-hhhhcccCC-CCCCcEEEEEcCChh---------hHHhcCccceEeCCCCCccchHHH
Q 040015 278 AGKKFLLVLDDVWSRRNDD-W-DLICSPLKA-GARGSKIIITTRDSS---------IAASMGTVAAHHLECLAFEDCSSI 345 (1399)
Q Consensus 278 ~~~r~LlvlDdv~~~~~~~-~-~~l~~~l~~-~~~gs~ilvTtR~~~---------v~~~~~~~~~~~l~~L~~~~~~~l 345 (1399)
+ +.-+||+||+....... + +.+...+.. ...|..||+|+.... +...+....++++++.+.++-..+
T Consensus 210 ~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~i 288 (450)
T PRK00149 210 R-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAI 288 (450)
T ss_pred h-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHH
Confidence 3 34489999996532211 1 223222211 113445788776431 222334446899999999999999
Q ss_pred HHHhhhcCCCCCCCccHHHHHHHHHHHccCchhHHH
Q 040015 346 FMNQAFENRNTGISPDLETIGAEIVNKCEGLLLAVK 381 (1399)
Q Consensus 346 f~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 381 (1399)
+.+.+-... ..--+++...|++.+.|..-.+.
T Consensus 289 l~~~~~~~~----~~l~~e~l~~ia~~~~~~~R~l~ 320 (450)
T PRK00149 289 LKKKAEEEG----IDLPDEVLEFIAKNITSNVRELE 320 (450)
T ss_pred HHHHHHHcC----CCCCHHHHHHHHcCcCCCHHHHH
Confidence 998875421 12234568889999998876543
No 157
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.31 E-value=0.00049 Score=67.49 Aligned_cols=69 Identities=16% Similarity=0.134 Sum_probs=41.3
Q ss_pred EEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHHHHccCCCCCCCcchHHHHHHHHHHhcCc-c
Q 040015 203 VPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTILKSVTSKPADVDDDLNLLQVCLREKLAGK-K 281 (1399)
Q Consensus 203 v~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~~-r 281 (1399)
|.|+|++|+||||+|+.+++.. ..+ .+.++.+...+. ...+....+...+.+.-+.. +
T Consensus 1 ill~G~~G~GKT~l~~~la~~l--~~~---~~~i~~~~~~~~----------------~~~~~~~~i~~~~~~~~~~~~~ 59 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL--GFP---FIEIDGSELISS----------------YAGDSEQKIRDFFKKAKKSAKP 59 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT--TSE---EEEEETTHHHTS----------------STTHHHHHHHHHHHHHHHTSTS
T ss_pred CEEECcCCCCeeHHHHHHHhhc--ccc---cccccccccccc----------------cccccccccccccccccccccc
Confidence 5799999999999999999843 222 244443322110 11122334444444443343 7
Q ss_pred eEEEecCCcCC
Q 040015 282 FLLVLDDVWSR 292 (1399)
Q Consensus 282 ~LlvlDdv~~~ 292 (1399)
.+|++||++.-
T Consensus 60 ~vl~iDe~d~l 70 (132)
T PF00004_consen 60 CVLFIDEIDKL 70 (132)
T ss_dssp EEEEEETGGGT
T ss_pred eeeeeccchhc
Confidence 99999999553
No 158
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.30 E-value=0.00015 Score=89.86 Aligned_cols=111 Identities=19% Similarity=0.157 Sum_probs=84.1
Q ss_pred cccCccceeccCCCCCCcccccccccccccccCCCCcccEEEecCCCCcccCcccCCCCCCcEEeccCCcccccc--ccc
Q 040015 552 NEAECLRTFLPLDPTGEIGVSYLADRVPRDILPRLKCLRVLSFSACRITALPDSVGDLKHLRYLDLSRTAIKQLP--DST 629 (1399)
Q Consensus 552 ~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~Ls~n~i~~lP--~~i 629 (1399)
..+|.||+|.+.+-.. ...-....+.++++|+.||+|+++++.+ ..+++|++|++|.+.+=.++.-+ ..+
T Consensus 145 ~~LPsL~sL~i~~~~~-------~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~L 216 (699)
T KOG3665|consen 145 TMLPSLRSLVISGRQF-------DNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDL 216 (699)
T ss_pred hhCcccceEEecCcee-------cchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHH
Confidence 4588999999876442 1111335678999999999999999988 78999999999999987777543 357
Q ss_pred cCCCCCcEEEccCCCCCCCc--Ch----hhccCCCCCEEEccCCccc
Q 040015 630 GNLCNLQSIILLECYSLSKL--PT----DLGNLTGLRHLRMSGSRLR 670 (1399)
Q Consensus 630 ~~L~~L~~L~L~~~~~~~~l--P~----~i~~L~~L~~L~l~~~~l~ 670 (1399)
.+|++|++||+|........ .. .-..|++||+||.+++.+.
T Consensus 217 F~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 217 FNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred hcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 88999999999987433221 11 1235999999999988754
No 159
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.30 E-value=0.0019 Score=83.68 Aligned_cols=158 Identities=15% Similarity=0.135 Sum_probs=84.5
Q ss_pred CccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccc---c-ccceEEEEeCCccCHHHH
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDG---R-FDLKVWVCVSDQFDVLRV 247 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~---~-f~~~~wv~~~~~~~~~~~ 247 (1399)
..+|||+.++++++..|.... ..-+.++|.+|+|||++|+.+++...... . ....+|.- +...+
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~-------~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l-----~~~~l 240 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRT-------KNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL-----DMGAL 240 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCC-------CCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe-----eHHHH
Confidence 458999999999999996543 33455899999999999999987421110 0 12333321 11111
Q ss_pred HHHHHHHccCCCCCCCcchHHHHHHHHHHhc-CcceEEEecCCcCCCc-------chhhhhhcccCCCCCCcEEEEEcCC
Q 040015 248 TTTILKSVTSKPADVDDDLNLLQVCLREKLA-GKKFLLVLDDVWSRRN-------DDWDLICSPLKAGARGSKIIITTRD 319 (1399)
Q Consensus 248 ~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~-~~r~LlvlDdv~~~~~-------~~~~~l~~~l~~~~~gs~ilvTtR~ 319 (1399)
. . +.. ...+....+...+.+.-+ +++.+|++|++..-.. .+...+..+....+ .-++|.+|..
T Consensus 241 ~----a---~~~-~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g-~i~~IgaTt~ 311 (852)
T TIGR03346 241 I----A---GAK-YRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARG-ELHCIGATTL 311 (852)
T ss_pred h----h---cch-hhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcC-ceEEEEeCcH
Confidence 1 0 000 001112233333333322 4689999999853210 01112222222211 2345555554
Q ss_pred hhhHHhc-------CccceEeCCCCCccchHHHHHHhh
Q 040015 320 SSIAASM-------GTVAAHHLECLAFEDCSSIFMNQA 350 (1399)
Q Consensus 320 ~~v~~~~-------~~~~~~~l~~L~~~~~~~lf~~~a 350 (1399)
......+ ....++.++..+.++...++....
T Consensus 312 ~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 312 DEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 4332111 233568888889999999887654
No 160
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.28 E-value=0.0062 Score=77.34 Aligned_cols=166 Identities=17% Similarity=0.198 Sum_probs=88.2
Q ss_pred CCccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHH
Q 040015 171 ESCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTT 250 (1399)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 250 (1399)
+.+.+|.++.+++|.++|...... ......++.++|++|+||||+|+.++.. ....|- -+..+...+..++...
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~-~~~~g~~i~l~GppG~GKTtl~~~ia~~--l~~~~~---~i~~~~~~d~~~i~g~ 394 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRV-NKIKGPILCLVGPPGVGKTSLGQSIAKA--TGRKYV---RMALGGVRDEAEIRGH 394 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhc-ccCCCceEEEECCCCCCHHHHHHHHHHH--hCCCEE---EEEcCCCCCHHHhccc
Confidence 456899999999999998743210 1234568999999999999999999972 333332 2333433333222211
Q ss_pred HHHHccCCCCCCCcchHHHHHHHHHHhcCcceEEEecCCcCCCcch----hhhhhcccCC---------------CCCCc
Q 040015 251 ILKSVTSKPADVDDDLNLLQVCLREKLAGKKFLLVLDDVWSRRNDD----WDLICSPLKA---------------GARGS 311 (1399)
Q Consensus 251 i~~~l~~~~~~~~~~~~~l~~~l~~~l~~~r~LlvlDdv~~~~~~~----~~~l~~~l~~---------------~~~gs 311 (1399)
-....+ .. ...+...+... ....-+|+||.++.-..+. ...+...+.. .-...
T Consensus 395 ~~~~~g----~~---~G~~~~~l~~~-~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v 466 (784)
T PRK10787 395 RRTYIG----SM---PGKLIQKMAKV-GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDV 466 (784)
T ss_pred hhccCC----CC---CcHHHHHHHhc-CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCce
Confidence 100000 00 12222233322 2234578999986533221 2233333321 11233
Q ss_pred EEEEEcCChhhHHhc-CccceEeCCCCCccchHHHHHHhh
Q 040015 312 KIIITTRDSSIAASM-GTVAAHHLECLAFEDCSSIFMNQA 350 (1399)
Q Consensus 312 ~ilvTtR~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a 350 (1399)
-+|.|+....+...+ +...++++.+++.++-.++.+++.
T Consensus 467 ~~i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 467 MFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EEEEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 445555443332222 233567888888777777766654
No 161
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.28 E-value=0.0041 Score=73.97 Aligned_cols=160 Identities=19% Similarity=0.147 Sum_probs=93.3
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCcccccc-cc-ceEEEEeCCccCHHHHHHHHHHHccCCCCCCCcchHHHHHHHHHHh
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSRVDGR-FD-LKVWVCVSDQFDVLRVTTTILKSVTSKPADVDDDLNLLQVCLREKL 277 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~-f~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l 277 (1399)
..-+.|+|..|+|||.||+.+++. .... .. .++|++. .+...++...+... ..+. +++.+
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~--l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~------~~~~----f~~~~ 191 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITS------EKFLNDLVDSMKEG------KLNE----FREKY 191 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHH--HHHhCCCCeEEEEEH------HHHHHHHHHHHhcc------cHHH----HHHHH
Confidence 345899999999999999999984 3232 22 3556654 34555555554321 1222 22333
Q ss_pred cCcceEEEecCCcCCCc-chh-hhhhcccCC-CCCCcEEEEEcC-ChhhH--------HhcCccceEeCCCCCccchHHH
Q 040015 278 AGKKFLLVLDDVWSRRN-DDW-DLICSPLKA-GARGSKIIITTR-DSSIA--------ASMGTVAAHHLECLAFEDCSSI 345 (1399)
Q Consensus 278 ~~~r~LlvlDdv~~~~~-~~~-~~l~~~l~~-~~~gs~ilvTtR-~~~v~--------~~~~~~~~~~l~~L~~~~~~~l 345 (1399)
..+.-+|++||+..... ..+ +.+...+.. ...|..||+||. .+.-. ..+....++++++.+.+.-.++
T Consensus 192 ~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~I 271 (440)
T PRK14088 192 RKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKI 271 (440)
T ss_pred HhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHH
Confidence 33456899999964211 111 222222211 123456888874 33221 2223445789999999999999
Q ss_pred HHHhhhcCCCCCCCccHHHHHHHHHHHccCchhHHH
Q 040015 346 FMNQAFENRNTGISPDLETIGAEIVNKCEGLLLAVK 381 (1399)
Q Consensus 346 f~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 381 (1399)
+.+.+..... .--+++...|++.+.|..-.+.
T Consensus 272 L~~~~~~~~~----~l~~ev~~~Ia~~~~~~~R~L~ 303 (440)
T PRK14088 272 ARKMLEIEHG----ELPEEVLNFVAENVDDNLRRLR 303 (440)
T ss_pred HHHHHHhcCC----CCCHHHHHHHHhccccCHHHHH
Confidence 9888753221 1224678888888888655443
No 162
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.27 E-value=0.0016 Score=81.67 Aligned_cols=158 Identities=16% Similarity=0.181 Sum_probs=86.1
Q ss_pred CccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCcc---cccc-ccceEEEEeCCccCHHHH
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSR---VDGR-FDLKVWVCVSDQFDVLRV 247 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~---~~~~-f~~~~wv~~~~~~~~~~~ 247 (1399)
..++||+++++++++.|.... ..-+.++|.+|+|||++|+.+++... +... .++.+|.. +...+
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~-------~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~l 253 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRR-------KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSL 253 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccC-------CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHH
Confidence 358999999999999997643 22345899999999999999986321 1111 24444421 11111
Q ss_pred HHHHHHHccCCCCCCCcchHHHHHHHHHHhcCcceEEEecCCcCC--------CcchhhhhhcccCCCCCCcEEEEEcCC
Q 040015 248 TTTILKSVTSKPADVDDDLNLLQVCLREKLAGKKFLLVLDDVWSR--------RNDDWDLICSPLKAGARGSKIIITTRD 319 (1399)
Q Consensus 248 ~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~~r~LlvlDdv~~~--------~~~~~~~l~~~l~~~~~gs~ilvTtR~ 319 (1399)
+. +.. ...+....+...+...-+.++.+|++|++..- ...+...+..++... ..-+||-+|..
T Consensus 254 ----la---G~~-~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~-g~i~vIgATt~ 324 (758)
T PRK11034 254 ----LA---GTK-YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGSTTY 324 (758)
T ss_pred ----hc---ccc-hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC-CCeEEEecCCh
Confidence 10 100 00110122222222222356789999999531 111222223332222 23455555554
Q ss_pred hhhHHhc-------CccceEeCCCCCccchHHHHHHhh
Q 040015 320 SSIAASM-------GTVAAHHLECLAFEDCSSIFMNQA 350 (1399)
Q Consensus 320 ~~v~~~~-------~~~~~~~l~~L~~~~~~~lf~~~a 350 (1399)
++....+ .....+.+++.+.++..+++....
T Consensus 325 ~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 325 QEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 4332111 233578999999999999987654
No 163
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.27 E-value=4.4e-05 Score=94.43 Aligned_cols=67 Identities=21% Similarity=0.223 Sum_probs=32.7
Q ss_pred cCCccceeeeccchhhhhhhhhhcccccccccEEEeecC-CCcccch----hhhhCCCCccEEEEecCCCCc
Q 040015 1062 HFTALEELQISHLAELMTLSNKIGLRSLLSLQRLEISEC-PYFKELP----EKFYELSTLKVLRISNCPSLV 1128 (1399)
Q Consensus 1062 ~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~-~~~~~l~----~~~~~l~~L~~L~ls~c~~l~ 1128 (1399)
.++.|+.|.+.+|..+...........++.|+.|++++| ......+ .....+.+|+.|++++|..++
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~is 257 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVT 257 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccC
Confidence 356666666666655554222222335666666666652 2222211 122334555556665555433
No 164
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.26 E-value=1.3e-05 Score=93.24 Aligned_cols=84 Identities=29% Similarity=0.310 Sum_probs=40.4
Q ss_pred cCCCCcccEEEecCCCCcccCcc-cCCCCCCcEEeccCCccccccccccCCCCCcEEEccCCCCCCCcC--hhhccCCCC
Q 040015 583 LPRLKCLRVLSFSACRITALPDS-VGDLKHLRYLDLSRTAIKQLPDSTGNLCNLQSIILLECYSLSKLP--TDLGNLTGL 659 (1399)
Q Consensus 583 ~~~l~~Lr~L~Ls~~~i~~lp~~-i~~L~~L~~L~Ls~n~i~~lP~~i~~L~~L~~L~L~~~~~~~~lP--~~i~~L~~L 659 (1399)
+..+++|+.|||++|++..+|.- ...+ +|..|.|++|.++.| ..+.+|++|+.||+++| .+...- .-++.|..|
T Consensus 205 Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~l~tL-~gie~LksL~~LDlsyN-ll~~hseL~pLwsLs~L 281 (1096)
T KOG1859|consen 205 LRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNALTTL-RGIENLKSLYGLDLSYN-LLSEHSELEPLWSLSSL 281 (1096)
T ss_pred HHhcccccccccccchhccccccchhhh-hheeeeecccHHHhh-hhHHhhhhhhccchhHh-hhhcchhhhHHHHHHHH
Confidence 44555555555555555555421 1122 255555555555555 23555555555555555 222110 114445555
Q ss_pred CEEEccCCcc
Q 040015 660 RHLRMSGSRL 669 (1399)
Q Consensus 660 ~~L~l~~~~l 669 (1399)
+.|+|.||.+
T Consensus 282 ~~L~LeGNPl 291 (1096)
T KOG1859|consen 282 IVLWLEGNPL 291 (1096)
T ss_pred HHHhhcCCcc
Confidence 5555555544
No 165
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.26 E-value=0.0042 Score=73.54 Aligned_cols=155 Identities=15% Similarity=0.107 Sum_probs=87.7
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHHHHccCCCCCCCcchHHHHHHHHHHhcC
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTILKSVTSKPADVDDDLNLLQVCLREKLAG 279 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~ 279 (1399)
..-+.|+|+.|+|||+|++.+++... ..-..+++++. ..+..++...+... . .+ .+++.++
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~--~~~~~v~yi~~------~~f~~~~~~~l~~~-----~-~~----~f~~~~~- 201 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALR--ESGGKILYVRS------ELFTEHLVSAIRSG-----E-MQ----RFRQFYR- 201 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHH--HcCCCEEEeeH------HHHHHHHHHHHhcc-----h-HH----HHHHHcc-
Confidence 45678999999999999999998432 22233455543 33444444444321 0 11 2333333
Q ss_pred cceEEEecCCcCCCcchh--hhhhcccCC-CCCCcEEEEEcCCh---------hhHHhcCccceEeCCCCCccchHHHHH
Q 040015 280 KKFLLVLDDVWSRRNDDW--DLICSPLKA-GARGSKIIITTRDS---------SIAASMGTVAAHHLECLAFEDCSSIFM 347 (1399)
Q Consensus 280 ~r~LlvlDdv~~~~~~~~--~~l~~~l~~-~~~gs~ilvTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~ 347 (1399)
..-++++||+.......| +.+...+.. ...|..||+||... .+...+....++++.+++.++-..++.
T Consensus 202 ~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~ 281 (445)
T PRK12422 202 NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLE 281 (445)
T ss_pred cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHH
Confidence 345888999855322222 222222211 11355788888542 122333445688999999999999998
Q ss_pred HhhhcCCCCCCCccHHHHHHHHHHHccCch
Q 040015 348 NQAFENRNTGISPDLETIGAEIVNKCEGLL 377 (1399)
Q Consensus 348 ~~a~~~~~~~~~~~~~~~~~~i~~~~~g~P 377 (1399)
+++-.... .--+++..-|++.+.|.-
T Consensus 282 ~k~~~~~~----~l~~evl~~la~~~~~di 307 (445)
T PRK12422 282 RKAEALSI----RIEETALDFLIEALSSNV 307 (445)
T ss_pred HHHHHcCC----CCCHHHHHHHHHhcCCCH
Confidence 88754321 122345666777666543
No 166
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.23 E-value=0.0042 Score=76.43 Aligned_cols=196 Identities=13% Similarity=0.172 Sum_probs=109.0
Q ss_pred CccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHH
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTI 251 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 251 (1399)
.++||.+..++.|..++.... -...+.++|+.|+||||+|+.+++...-....+ ...++.-...++|
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~------~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~-------~~~c~~c~~c~~i 82 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGR------VAHAFLFTGARGVGKTSTARILAKALNCEQGLT-------AEPCNVCPPCVEI 82 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCC------CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCC-------CCCCCccHHHHHH
Confidence 468999999999999986543 235668999999999999999986321000000 0001111111111
Q ss_pred HHHc-------cCCCCCCCcchHHHHHHHHHH-hcCcceEEEecCCcCCCcchhhhhhcccCCCCCCcEEEE-EcCChhh
Q 040015 252 LKSV-------TSKPADVDDDLNLLQVCLREK-LAGKKFLLVLDDVWSRRNDDWDLICSPLKAGARGSKIII-TTRDSSI 322 (1399)
Q Consensus 252 ~~~l-------~~~~~~~~~~~~~l~~~l~~~-l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv-TtR~~~v 322 (1399)
...- .+......+++.++...+... ..+++-++|+|++..-.....+.+...+......+.+|+ ||....+
T Consensus 83 ~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl 162 (576)
T PRK14965 83 TEGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKV 162 (576)
T ss_pred hcCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhh
Confidence 1100 000000001122222222111 134455889999976555567777777765555666654 5444545
Q ss_pred HHhc-CccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCch-hHHHHHH
Q 040015 323 AASM-GTVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLL-LAVKRMG 384 (1399)
Q Consensus 323 ~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~P-Lai~~~~ 384 (1399)
...+ .....+++++++.++....+...+-..+. .-..+....|++.++|.. .|+..+-
T Consensus 163 ~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi----~i~~~al~~la~~a~G~lr~al~~Ld 222 (576)
T PRK14965 163 PITILSRCQRFDFRRIPLQKIVDRLRYIADQEGI----SISDAALALVARKGDGSMRDSLSTLD 222 (576)
T ss_pred hHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCC----CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4433 23467889999998888777765533221 122345778999999976 4444443
No 167
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.20 E-value=0.012 Score=61.42 Aligned_cols=182 Identities=12% Similarity=0.130 Sum_probs=108.0
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeC-CccCHHHHHHHHHHHccCCCCCCCc-chHHHHHHHHHHh
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVS-DQFDVLRVTTTILKSVTSKPADVDD-DLNLLQVCLREKL 277 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~~l~~~~~~~~~-~~~~l~~~l~~~l 277 (1399)
.+++.++|.-|.|||.+++....... + +.++-|.+. .......+...++..+..+...... -.++....+.+..
T Consensus 51 qg~~~vtGevGsGKTv~~Ral~~s~~--~--d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~ 126 (269)
T COG3267 51 QGILAVTGEVGSGKTVLRRALLASLN--E--DQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALV 126 (269)
T ss_pred CceEEEEecCCCchhHHHHHHHHhcC--C--CceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHH
Confidence 56999999999999999995543211 1 112223443 3456677888888888763322111 2334444444444
Q ss_pred -cCcc-eEEEecCCcCCCcchhhhhhcccCCCCCCc---EEEEEcCC-------hhhHHhcC--ccceEeCCCCCccchH
Q 040015 278 -AGKK-FLLVLDDVWSRRNDDWDLICSPLKAGARGS---KIIITTRD-------SSIAASMG--TVAAHHLECLAFEDCS 343 (1399)
Q Consensus 278 -~~~r-~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs---~ilvTtR~-------~~v~~~~~--~~~~~~l~~L~~~~~~ 343 (1399)
+++| ..++.||..+...+..+.++....-...++ +|+..-.. ..+.+..+ ....|++.|++.++..
T Consensus 127 ~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t~ 206 (269)
T COG3267 127 KKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAETG 206 (269)
T ss_pred HhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHHHH
Confidence 5777 899999997766666665544332221222 23332221 01111111 1223899999999888
Q ss_pred HHHHHhhhcCCCCCCCccHHHHHHHHHHHccCchhHHHHHHHH
Q 040015 344 SIFMNQAFENRNTGISPDLETIGAEIVNKCEGLLLAVKRMGII 386 (1399)
Q Consensus 344 ~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~ 386 (1399)
.++..+.-+...+ .+---.+....|..+..|.|.+|..++..
T Consensus 207 ~yl~~~Le~a~~~-~~l~~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 207 LYLRHRLEGAGLP-EPLFSDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred HHHHHHHhccCCC-cccCChhHHHHHHHHhccchHHHHHHHHH
Confidence 8887776544322 12223456778999999999999887654
No 168
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.20 E-value=1.5e-05 Score=92.73 Aligned_cols=84 Identities=30% Similarity=0.367 Sum_probs=45.3
Q ss_pred cCCCCcccEEEecCCCCcccCcccCCCCCCcEEeccCCccccccc-cccCCCCCcEEEccCCCCCCCcChhhccCCCCCE
Q 040015 583 LPRLKCLRVLSFSACRITALPDSVGDLKHLRYLDLSRTAIKQLPD-STGNLCNLQSIILLECYSLSKLPTDLGNLTGLRH 661 (1399)
Q Consensus 583 ~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~Ls~n~i~~lP~-~i~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~ 661 (1399)
+.-++.|+.|||++|+++... .+..|.+|++|||++|.+..+|. +...+. |+.|.+++| -+..+ .++.+|.+|++
T Consensus 183 Lqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN-~l~tL-~gie~LksL~~ 258 (1096)
T KOG1859|consen 183 LQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNN-ALTTL-RGIENLKSLYG 258 (1096)
T ss_pred HHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeeeccc-HHHhh-hhHHhhhhhhc
Confidence 344555666666666555543 45555566666666666655554 222333 566666555 44444 34556666666
Q ss_pred EEccCCccc
Q 040015 662 LRMSGSRLR 670 (1399)
Q Consensus 662 L~l~~~~l~ 670 (1399)
||++.|-+.
T Consensus 259 LDlsyNll~ 267 (1096)
T KOG1859|consen 259 LDLSYNLLS 267 (1096)
T ss_pred cchhHhhhh
Confidence 666655443
No 169
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.18 E-value=0.0022 Score=75.07 Aligned_cols=159 Identities=17% Similarity=0.158 Sum_probs=87.6
Q ss_pred CccccchhHHHHHHHHHhccCCC------CCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHH
Q 040015 172 SCVYGRENDKNAIVELLMVEDDS------SSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVL 245 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 245 (1399)
.++.|.+.++++|.+.+.-.-.. -+-...+-+.++|++|+|||++|+.+++. ....| +.+..+.
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~e--l~~~f---i~V~~se----- 252 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANE--TSATF---LRVVGSE----- 252 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHh--hCCCE---EEEecch-----
Confidence 45789999999988877421100 01123456779999999999999999983 33333 1221111
Q ss_pred HHHHHHHHHccCCCCCCCcchHHHHHHHHHHhcCcceEEEecCCcCCCc----------ch----hhhhhcccCC--CCC
Q 040015 246 RVTTTILKSVTSKPADVDDDLNLLQVCLREKLAGKKFLLVLDDVWSRRN----------DD----WDLICSPLKA--GAR 309 (1399)
Q Consensus 246 ~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~~r~LlvlDdv~~~~~----------~~----~~~l~~~l~~--~~~ 309 (1399)
+. ....+ .....+...+.....+.+.+|+||+++.... .. ...+...+.. ...
T Consensus 253 -L~----~k~~G------e~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~ 321 (438)
T PTZ00361 253 -LI----QKYLG------DGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRG 321 (438)
T ss_pred -hh----hhhcc------hHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccC
Confidence 11 11111 0012222333333346678999999743100 00 1111111211 123
Q ss_pred CcEEEEEcCChhhHHh-c---C-ccceEeCCCCCccchHHHHHHhhh
Q 040015 310 GSKIIITTRDSSIAAS-M---G-TVAAHHLECLAFEDCSSIFMNQAF 351 (1399)
Q Consensus 310 gs~ilvTtR~~~v~~~-~---~-~~~~~~l~~L~~~~~~~lf~~~a~ 351 (1399)
+.+||+||...+.... + + -...++++..+.++..++|..+..
T Consensus 322 ~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~ 368 (438)
T PTZ00361 322 DVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTS 368 (438)
T ss_pred CeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHh
Confidence 5678888876544332 1 1 235788998888888899987653
No 170
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.13 E-value=0.0033 Score=81.13 Aligned_cols=45 Identities=20% Similarity=0.358 Sum_probs=38.0
Q ss_pred CccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcC
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
..+|||+.+++++++.|.... ..-+.++|.+|+|||++|+.++..
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~-------~~n~lL~G~pGvGKT~l~~~la~~ 222 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRT-------KNNPVLIGEPGVGKTAIVEGLAQR 222 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCC-------cCceEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999997653 335568999999999999999874
No 171
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.12 E-value=0.0034 Score=63.42 Aligned_cols=44 Identities=23% Similarity=0.243 Sum_probs=36.4
Q ss_pred CccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhc
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
.++||-++.++++.-.-.++ +.+-+.|.||+|+||||-+...++
T Consensus 27 ~dIVGNe~tv~rl~via~~g-------nmP~liisGpPG~GKTTsi~~LAr 70 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKEG-------NMPNLIISGPPGTGKTTSILCLAR 70 (333)
T ss_pred HHhhCCHHHHHHHHHHHHcC-------CCCceEeeCCCCCchhhHHHHHHH
Confidence 46899999999887666443 477889999999999998888876
No 172
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.012 Score=72.47 Aligned_cols=124 Identities=17% Similarity=0.291 Sum_probs=79.3
Q ss_pred CccccchhHHHHHHHHHhccCCC--CCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccc---cceEEEEeCCccCHHH
Q 040015 172 SCVYGRENDKNAIVELLMVEDDS--SSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRF---DLKVWVCVSDQFDVLR 246 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~--~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f---~~~~wv~~~~~~~~~~ 246 (1399)
..++|-+..++.+.+.+.....+ .......+...+|+.|||||.||++++.. -| +..+-++.|+-. .
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~-----Lfg~e~aliR~DMSEy~-E-- 562 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEA-----LFGDEQALIRIDMSEYM-E-- 562 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHH-----hcCCCccceeechHHHH-H--
Confidence 45899999999999999764311 12345778889999999999999999862 23 334444444321 1
Q ss_pred HHHHHHHHccCCCCCCCcchHHHHHHHHHHhcCcce-EEEecCCcCCCcchhhhhhcccCCC
Q 040015 247 VTTTILKSVTSKPADVDDDLNLLQVCLREKLAGKKF-LLVLDDVWSRRNDDWDLICSPLKAG 307 (1399)
Q Consensus 247 ~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~~r~-LlvlDdv~~~~~~~~~~l~~~l~~~ 307 (1399)
+.-...|-+..+..-. .++ -..+.+..+.++| +|.||++...+++..+-+...|.++
T Consensus 563 --kHsVSrLIGaPPGYVG-yee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdG 620 (786)
T COG0542 563 --KHSVSRLIGAPPGYVG-YEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDG 620 (786)
T ss_pred --HHHHHHHhCCCCCCce-ecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCC
Confidence 1222333333322111 111 2245566677878 7888999888888888888777654
No 173
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.12 E-value=0.0064 Score=68.95 Aligned_cols=97 Identities=7% Similarity=0.130 Sum_probs=65.4
Q ss_pred CcceEEEecCCcCCCcchhhhhhcccCCCCCCcEEEEEcCCh-hhHHhc-CccceEeCCCCCccchHHHHHHhhhcCCCC
Q 040015 279 GKKFLLVLDDVWSRRNDDWDLICSPLKAGARGSKIIITTRDS-SIAASM-GTVAAHHLECLAFEDCSSIFMNQAFENRNT 356 (1399)
Q Consensus 279 ~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 356 (1399)
+++=++|+|+++.-.....+.+...+..-..++.+|+||.+. .+...+ +....+.+.+++.+++.+.+.... ...
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~-~~~-- 181 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQAL-PES-- 181 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhc-ccC--
Confidence 334455679997776677788777776655677777777664 344332 334679999999999998887643 111
Q ss_pred CCCccHHHHHHHHHHHccCchhHHHHH
Q 040015 357 GISPDLETIGAEIVNKCEGLLLAVKRM 383 (1399)
Q Consensus 357 ~~~~~~~~~~~~i~~~~~g~PLai~~~ 383 (1399)
..+.+..++..++|.|..+..+
T Consensus 182 -----~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 182 -----DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred -----ChHHHHHHHHHcCCCHHHHHHH
Confidence 1233567789999999766544
No 174
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.10 E-value=0.002 Score=64.16 Aligned_cols=88 Identities=18% Similarity=0.078 Sum_probs=47.0
Q ss_pred EEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHHHHccCCCCCCCcchHHHHHHHHHHhcCc
Q 040015 201 SVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTILKSVTSKPADVDDDLNLLQVCLREKLAGK 280 (1399)
Q Consensus 201 ~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~~ 280 (1399)
..+.|+|++|+||||+|+.++.... .....++++..+........... ............ .......+.+.....
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 77 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELG--PPGGGVIYIDGEDILEEVLDQLL--LIIVGGKKASGS-GELRLRLALALARKL 77 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccC--CCCCCEEEECCEEccccCHHHHH--hhhhhccCCCCC-HHHHHHHHHHHHHhc
Confidence 5789999999999999999998432 22223555555443322221111 111111111111 222223334444433
Q ss_pred -ceEEEecCCcCCC
Q 040015 281 -KFLLVLDDVWSRR 293 (1399)
Q Consensus 281 -r~LlvlDdv~~~~ 293 (1399)
..+|++|+++...
T Consensus 78 ~~~viiiDei~~~~ 91 (148)
T smart00382 78 KPDVLILDEITSLL 91 (148)
T ss_pred CCCEEEEECCcccC
Confidence 4899999997653
No 175
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.08 E-value=0.0063 Score=69.46 Aligned_cols=137 Identities=18% Similarity=0.138 Sum_probs=82.4
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHHHHccCCCCCCCcchHHHHHHHHHHhc
Q 040015 199 NVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTILKSVTSKPADVDDDLNLLQVCLREKLA 278 (1399)
Q Consensus 199 ~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~ 278 (1399)
....+.|||..|.|||-|++++.+. ...+......++++ .+....+++..+.. .-....++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~--~~~~~~~a~v~y~~----se~f~~~~v~a~~~----------~~~~~Fk~~y- 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNE--ALANGPNARVVYLT----SEDFTNDFVKALRD----------NEMEKFKEKY- 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHH--HHhhCCCceEEecc----HHHHHHHHHHHHHh----------hhHHHHHHhh-
Confidence 4778999999999999999999984 44444433333332 22333344443322 1122334444
Q ss_pred CcceEEEecCCcCCCc-chhh-hhhcccCC-CCCCcEEEEEcCC---------hhhHHhcCccceEeCCCCCccchHHHH
Q 040015 279 GKKFLLVLDDVWSRRN-DDWD-LICSPLKA-GARGSKIIITTRD---------SSIAASMGTVAAHHLECLAFEDCSSIF 346 (1399)
Q Consensus 279 ~~r~LlvlDdv~~~~~-~~~~-~l~~~l~~-~~~gs~ilvTtR~---------~~v~~~~~~~~~~~l~~L~~~~~~~lf 346 (1399)
.-=++++||++.-.. +.|+ .+...|.. ...|-.||+|++. +.+...+...-++++.+.+.+.-..++
T Consensus 175 -~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL 253 (408)
T COG0593 175 -SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAIL 253 (408)
T ss_pred -ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHH
Confidence 334889999965321 1222 22222221 1234489999964 334455566688999999999999999
Q ss_pred HHhhhcC
Q 040015 347 MNQAFEN 353 (1399)
Q Consensus 347 ~~~a~~~ 353 (1399)
.+++...
T Consensus 254 ~kka~~~ 260 (408)
T COG0593 254 RKKAEDR 260 (408)
T ss_pred HHHHHhc
Confidence 8876543
No 176
>PRK08116 hypothetical protein; Validated
Probab=97.04 E-value=0.0016 Score=71.82 Aligned_cols=104 Identities=24% Similarity=0.304 Sum_probs=59.3
Q ss_pred EEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHHHHccCCCCCCCcchHHHHHHHHHHhcCc
Q 040015 201 SVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTILKSVTSKPADVDDDLNLLQVCLREKLAGK 280 (1399)
Q Consensus 201 ~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~~ 280 (1399)
.-+.++|..|+|||.||.++++... .+-..++++++ .+++..+........ ..+..+ +.+.+.+-
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~--~~~~~v~~~~~------~~ll~~i~~~~~~~~---~~~~~~----~~~~l~~~ 179 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELI--EKGVPVIFVNF------PQLLNRIKSTYKSSG---KEDENE----IIRSLVNA 179 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEEEH------HHHHHHHHHHHhccc---cccHHH----HHHHhcCC
Confidence 3578999999999999999999532 22334566653 345555554433211 111222 22333433
Q ss_pred ceEEEecCCcCCCcchhhh--hhcccCC-CCCCcEEEEEcCCh
Q 040015 281 KFLLVLDDVWSRRNDDWDL--ICSPLKA-GARGSKIIITTRDS 320 (1399)
Q Consensus 281 r~LlvlDdv~~~~~~~~~~--l~~~l~~-~~~gs~ilvTtR~~ 320 (1399)
. ||||||+..+...+|.. +...+.. -..|..+||||...
T Consensus 180 d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 180 D-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred C-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 3 89999996554455643 3322221 12455689999753
No 177
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.0095 Score=70.40 Aligned_cols=107 Identities=23% Similarity=0.336 Sum_probs=68.4
Q ss_pred CCccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHH
Q 040015 171 ESCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTT 250 (1399)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 250 (1399)
+.+-+|.++-+++|.+++.-.. -.+..+.++++.+|++|||||.+|+.++. ...+.| +-++|+.-.|..+|-..
T Consensus 410 deDHYgm~dVKeRILEfiAV~k-Lrgs~qGkIlCf~GPPGVGKTSI~kSIA~--ALnRkF---fRfSvGG~tDvAeIkGH 483 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGK-LRGSVQGKILCFVGPPGVGKTSIAKSIAR--ALNRKF---FRFSVGGMTDVAEIKGH 483 (906)
T ss_pred cccccchHHHHHHHHHHHHHHh-hcccCCCcEEEEeCCCCCCcccHHHHHHH--HhCCce---EEEeccccccHHhhccc
Confidence 5678999999999999997543 11345678999999999999999999998 444445 23466666665544221
Q ss_pred HHHHccCCCCCCCcchHHHHHHHHHHhcCcceEEEecCCcC
Q 040015 251 ILKSVTSKPADVDDDLNLLQVCLREKLAGKKFLLVLDDVWS 291 (1399)
Q Consensus 251 i~~~l~~~~~~~~~~~~~l~~~l~~~l~~~r~LlvlDdv~~ 291 (1399)
--..++ .- ...+++.++.. +...-|+.+|.|+.
T Consensus 484 RRTYVG------AM-PGkiIq~LK~v-~t~NPliLiDEvDK 516 (906)
T KOG2004|consen 484 RRTYVG------AM-PGKIIQCLKKV-KTENPLILIDEVDK 516 (906)
T ss_pred ceeeec------cC-ChHHHHHHHhh-CCCCceEEeehhhh
Confidence 111111 01 12233333322 45567899999854
No 178
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.00 E-value=0.0031 Score=77.02 Aligned_cols=51 Identities=14% Similarity=0.198 Sum_probs=40.7
Q ss_pred CCccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcC
Q 040015 171 ESCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
-.+++|-+..++++..++....- .....+++.|+|++|+||||+++.++..
T Consensus 83 ldel~~~~~ki~~l~~~l~~~~~--~~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 83 QHELAVHKKKIEEVETWLKAQVL--ENAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred HHHhcCcHHHHHHHHHHHHhccc--ccCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999865421 1123468999999999999999999973
No 179
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=96.98 E-value=0.0073 Score=70.33 Aligned_cols=181 Identities=15% Similarity=0.135 Sum_probs=95.2
Q ss_pred CCccccchhHHHHHHHHHhccCC------CCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCH
Q 040015 171 ESCVYGRENDKNAIVELLMVEDD------SSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDV 244 (1399)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 244 (1399)
-.++.|.+..+++|.+.+.-+-. .-+-...+-+.++|++|+|||++|+.+++. ....| +.+..
T Consensus 144 ~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~--l~~~f-----i~i~~---- 212 (398)
T PTZ00454 144 YSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH--TTATF-----IRVVG---- 212 (398)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE-----EEEeh----
Confidence 34688999999888887642100 001123567889999999999999999984 22333 22211
Q ss_pred HHHHHHHHHHccCCCCCCCcchHHHHHHHHHHhcCcceEEEecCCcCCC------c----ch----hhhhhcccCC--CC
Q 040015 245 LRVTTTILKSVTSKPADVDDDLNLLQVCLREKLAGKKFLLVLDDVWSRR------N----DD----WDLICSPLKA--GA 308 (1399)
Q Consensus 245 ~~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~~r~LlvlDdv~~~~------~----~~----~~~l~~~l~~--~~ 308 (1399)
..+ .....+ .....+...+.......+.+|++|+++.-. . .. +..+...+.. ..
T Consensus 213 s~l----~~k~~g------e~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~ 282 (398)
T PTZ00454 213 SEF----VQKYLG------EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQT 282 (398)
T ss_pred HHH----HHHhcc------hhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCC
Confidence 111 111111 002222333333335678899999975310 0 01 1122222221 22
Q ss_pred CCcEEEEEcCChhhHH-hc-C---ccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCch
Q 040015 309 RGSKIIITTRDSSIAA-SM-G---TVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLL 377 (1399)
Q Consensus 309 ~gs~ilvTtR~~~v~~-~~-~---~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~P 377 (1399)
.+..||+||...+... .+ . -...++++..+.++-.++|..+.... ......+ ..++++.+.|.-
T Consensus 283 ~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~-~l~~dvd----~~~la~~t~g~s 351 (398)
T PTZ00454 283 TNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKM-NLSEEVD----LEDFVSRPEKIS 351 (398)
T ss_pred CCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcC-CCCcccC----HHHHHHHcCCCC
Confidence 4567888887654322 11 1 23567888878887777777654321 1111223 345666666654
No 180
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.017 Score=68.92 Aligned_cols=166 Identities=17% Similarity=0.198 Sum_probs=93.4
Q ss_pred CCccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHH
Q 040015 171 ESCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTT 250 (1399)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 250 (1399)
+.+.+|-++-+++|+++|.-..- ...-+.+++++||++|+|||.|++.+++ ...+.|- -++++.-.|..++-..
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l-~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~Rkfv---R~sLGGvrDEAEIRGH 395 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKL-TKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKFV---RISLGGVRDEAEIRGH 395 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHH-hccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCEE---EEecCccccHHHhccc
Confidence 56789999999999999975431 1233468999999999999999999998 4556663 2445554444332211
Q ss_pred HHHHccCCCCCCCcchHHHHHHHHHHhcCcceEEEecCCcCCCc----chhhhhhcccCCC-------------CCCcEE
Q 040015 251 ILKSVTSKPADVDDDLNLLQVCLREKLAGKKFLLVLDDVWSRRN----DDWDLICSPLKAG-------------ARGSKI 313 (1399)
Q Consensus 251 i~~~l~~~~~~~~~~~~~l~~~l~~~l~~~r~LlvlDdv~~~~~----~~~~~l~~~l~~~-------------~~gs~i 313 (1399)
=-..++ .- ...+.+.+++. +.+.=+++||.++.-.. +.-..+...|.+. -.=|+|
T Consensus 396 RRTYIG------am-PGrIiQ~mkka-~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~V 467 (782)
T COG0466 396 RRTYIG------AM-PGKIIQGMKKA-GVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKV 467 (782)
T ss_pred cccccc------cC-ChHHHHHHHHh-CCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhhe
Confidence 001111 00 12223333322 45677999999854321 1111122222111 112444
Q ss_pred E-EEcCC-hh-h-HHhcCccceEeCCCCCccchHHHHHHhh
Q 040015 314 I-ITTRD-SS-I-AASMGTVAAHHLECLAFEDCSSIFMNQA 350 (1399)
Q Consensus 314 l-vTtR~-~~-v-~~~~~~~~~~~l~~L~~~~~~~lf~~~a 350 (1399)
+ |||-+ -+ + +..+....++++.+-+++|=.++-+++.
T Consensus 468 mFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 468 MFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 4 34433 11 2 2233455788888888887777666654
No 181
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.94 E-value=0.12 Score=58.95 Aligned_cols=279 Identities=13% Similarity=0.118 Sum_probs=155.9
Q ss_pred chhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHH-HHHhcCccccccccceEEEEeCCc---cCHHHHHHHHH
Q 040015 177 RENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVA-QLVYNDSRVDGRFDLKVWVCVSDQ---FDVLRVTTTIL 252 (1399)
Q Consensus 177 r~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa-~~v~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~i~ 252 (1399)
|.+..++|..||.+.. -..|.|.|+-|.||+.|+ .++..+.+ .++.+++.+- .+-...++.++
T Consensus 1 R~e~~~~L~~wL~e~~-------~TFIvV~GPrGSGK~elV~d~~L~~r~------~vL~IDC~~i~~ar~D~~~I~~lA 67 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENP-------NTFIVVQGPRGSGKRELVMDHVLKDRK------NVLVIDCDQIVKARGDAAFIKNLA 67 (431)
T ss_pred CchHHHHHHHHHhcCC-------CeEEEEECCCCCCccHHHHHHHHhCCC------CEEEEEChHhhhccChHHHHHHHH
Confidence 6778999999998764 469999999999999999 77776422 2666665432 22345555555
Q ss_pred HHccCC-----------------------CCCCCcch-HHHHH-------HHHHH-------------------h---cC
Q 040015 253 KSVTSK-----------------------PADVDDDL-NLLQV-------CLREK-------------------L---AG 279 (1399)
Q Consensus 253 ~~l~~~-----------------------~~~~~~~~-~~l~~-------~l~~~-------------------l---~~ 279 (1399)
.+++-. .....++. .++.. .|++. + ..
T Consensus 68 ~qvGY~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe 147 (431)
T PF10443_consen 68 SQVGYFPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPE 147 (431)
T ss_pred HhcCCCcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCc
Confidence 555432 21211211 22221 12210 1 12
Q ss_pred cceEEEecCCcCCCc---chhhhhhcc--cCCCCCCcEEEEEcCChhhHHhcC------ccceEeCCCCCccchHHHHHH
Q 040015 280 KKFLLVLDDVWSRRN---DDWDLICSP--LKAGARGSKIIITTRDSSIAASMG------TVAAHHLECLAFEDCSSIFMN 348 (1399)
Q Consensus 280 ~r~LlvlDdv~~~~~---~~~~~l~~~--l~~~~~gs~ilvTtR~~~v~~~~~------~~~~~~l~~L~~~~~~~lf~~ 348 (1399)
+|=+||+|+.-.... .-|+.+... ..-..+=.+||++|-+........ ..+.+.|.-.+.+.|.++..+
T Consensus 148 ~~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~ 227 (431)
T PF10443_consen 148 RRPVVVIDNFLHKAEENDFIYDKLAEWAASLVQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLS 227 (431)
T ss_pred cCCEEEEcchhccCcccchHHHHHHHHHHHHHhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHH
Confidence 267899999744221 122222111 001234558999998765554332 346788999999999999988
Q ss_pred hhhcCCCC------------CCC----ccHHHHHHHHHHHccCchhHHHHHHHHHhcCCChH-HHHHHHhhhccCCCCCc
Q 040015 349 QAFENRNT------------GIS----PDLETIGAEIVNKCEGLLLAVKRMGIILRSREDKG-EWYDMLNRNIWDLPHDE 411 (1399)
Q Consensus 349 ~a~~~~~~------------~~~----~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~-~w~~~l~~~~~~~~~~~ 411 (1399)
+.-..... ... .....-....++.+||--.-+..+++.++...+++ .-.++.++.
T Consensus 228 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~~Av~~iI~qs-------- 299 (431)
T PF10443_consen 228 QLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPEEAVEEIISQS-------- 299 (431)
T ss_pred HhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHH--------
Confidence 76432110 000 12334456778999999999999999998876543 333444331
Q ss_pred chHHHHHHHhhc-------CCChhhhhhhhhhccCCCCcccchHHHHHHHHHhCCccccccchhHHHHHHHHHHHHHhcc
Q 040015 412 SSILQTLGLSYH-------HLPPHLKQCFAYCSVFPAGYEFDKEKLVLLWMAEGFVQQSNAKKKLEEVGREYFHELVSRS 484 (1399)
Q Consensus 412 ~~i~~~l~~sy~-------~L~~~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~~L~~~~ 484 (1399)
+..+.+.-+. ..+-...+.+..+-.+-+...++...++.- ..... .++..+..|.+..
T Consensus 300 --a~eI~k~fl~~~~~~~~~~~Wt~~QaW~LIk~Ls~~~~v~Y~~ll~~----~lFk~---------~~E~~L~aLe~ae 364 (431)
T PF10443_consen 300 --ASEIRKMFLLDDSDDAKSLKWTREQAWYLIKLLSKNDEVPYNELLLS----PLFKG---------NDETALRALEQAE 364 (431)
T ss_pred --HHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHhccCCcCcHHHHHcc----cccCC---------CChHHHHHHHHCC
Confidence 2222222222 222223334434444444445555555431 01111 1234688888999
Q ss_pred ccccccC
Q 040015 485 FFRQSVH 491 (1399)
Q Consensus 485 l~~~~~~ 491 (1399)
||.....
T Consensus 365 LItv~~~ 371 (431)
T PF10443_consen 365 LITVTTD 371 (431)
T ss_pred cEEEEec
Confidence 9877543
No 182
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.94 E-value=0.001 Score=66.00 Aligned_cols=98 Identities=23% Similarity=0.344 Sum_probs=58.2
Q ss_pred cccEEEecCCCCcccCcccCCCCCCcEEeccCCccccccccccC-CCCCcEEEccCCCCCCCcC--hhhccCCCCCEEEc
Q 040015 588 CLRVLSFSACRITALPDSVGDLKHLRYLDLSRTAIKQLPDSTGN-LCNLQSIILLECYSLSKLP--TDLGNLTGLRHLRM 664 (1399)
Q Consensus 588 ~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~Ls~n~i~~lP~~i~~-L~~L~~L~L~~~~~~~~lP--~~i~~L~~L~~L~l 664 (1399)
..-.+||++|.+..++ .|..+..|.+|.|++|.|+.+-+.+.. +++|+.|.+.+| .+..+- ..+..+++|++|.+
T Consensus 43 ~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCc-chhhhhhcchhccCCccceeee
Confidence 3456677777666553 355666777777777777766554443 555777777766 333332 12556677777777
Q ss_pred cCCcccccCcc----ccCCCCCCccCc
Q 040015 665 SGSRLREMPMK----MYKLKNLQTLSH 687 (1399)
Q Consensus 665 ~~~~l~~lp~~----i~~L~~L~~L~~ 687 (1399)
-+|.++.-+.- +.++++|++|+.
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF 147 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDF 147 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeeh
Confidence 77766543221 556666666654
No 183
>PRK10536 hypothetical protein; Provisional
Probab=96.93 E-value=0.0073 Score=64.24 Aligned_cols=55 Identities=15% Similarity=0.212 Sum_probs=40.6
Q ss_pred CccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEE
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVW 235 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~w 235 (1399)
..+.+|......+..++... .+|.+.|.+|+|||+||.++..+.-..+.|+.++-
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~---------~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI 109 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESK---------QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIV 109 (262)
T ss_pred ccccCCCHHHHHHHHHHhcC---------CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEE
Confidence 34678889999999988543 38999999999999999998874222344554443
No 184
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=96.90 E-value=0.011 Score=70.25 Aligned_cols=168 Identities=17% Similarity=0.165 Sum_probs=89.4
Q ss_pred CccccchhHHHHHHHHHhccCC------CCCCCCcEEEEEEcCCCchHHHHHHHHhcCcccc---ccccceEEEEeCCcc
Q 040015 172 SCVYGRENDKNAIVELLMVEDD------SSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVD---GRFDLKVWVCVSDQF 242 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~---~~f~~~~wv~~~~~~ 242 (1399)
.++.|.+..+++|.+.+..+-- .-+-...+-+.++|++|+|||++|+.+++..... ..+....|+.+...
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~- 260 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGP- 260 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccch-
Confidence 4578899999999888642110 0011224557899999999999999999843211 01223445554331
Q ss_pred CHHHHHHHHHHHccCCCCCCCcchHHHHHHHHHHh-cCcceEEEecCCcCCC-------cchh-----hhhhcccCCC--
Q 040015 243 DVLRVTTTILKSVTSKPADVDDDLNLLQVCLREKL-AGKKFLLVLDDVWSRR-------NDDW-----DLICSPLKAG-- 307 (1399)
Q Consensus 243 ~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l-~~~r~LlvlDdv~~~~-------~~~~-----~~l~~~l~~~-- 307 (1399)
+ ++....+ +.......+....++.. .+++.+|+||+++.-- ..+. ..+...+...
T Consensus 261 ---e----Ll~kyvG---ete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~ 330 (512)
T TIGR03689 261 ---E----LLNKYVG---ETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVES 330 (512)
T ss_pred ---h----hcccccc---hHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhccccc
Confidence 1 1111110 00001222223333222 3578999999996421 0111 1232222211
Q ss_pred CCCcEEEEEcCChhhHH-hc----CccceEeCCCCCccchHHHHHHhh
Q 040015 308 ARGSKIIITTRDSSIAA-SM----GTVAAHHLECLAFEDCSSIFMNQA 350 (1399)
Q Consensus 308 ~~gs~ilvTtR~~~v~~-~~----~~~~~~~l~~L~~~~~~~lf~~~a 350 (1399)
..+..||.||...+... .+ .-+..++++..+.++..++|..+.
T Consensus 331 ~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 331 LDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred CCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 13445666665443221 11 123468999999999999998876
No 185
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.019 Score=65.33 Aligned_cols=149 Identities=19% Similarity=0.251 Sum_probs=90.0
Q ss_pred CCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHHHHccCCCCCCCcchHHHHHHHHHH
Q 040015 197 SNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTILKSVTSKPADVDDDLNLLQVCLREK 276 (1399)
Q Consensus 197 ~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~ 276 (1399)
......+.+.|++|+|||+||..++.. ..|..+--++-.+.....+ . .....+.......
T Consensus 535 ~s~lvSvLl~Gp~~sGKTaLAA~iA~~----S~FPFvKiiSpe~miG~sE---------------s-aKc~~i~k~F~DA 594 (744)
T KOG0741|consen 535 RSPLVSVLLEGPPGSGKTALAAKIALS----SDFPFVKIISPEDMIGLSE---------------S-AKCAHIKKIFEDA 594 (744)
T ss_pred cCcceEEEEecCCCCChHHHHHHHHhh----cCCCeEEEeChHHccCccH---------------H-HHHHHHHHHHHHh
Confidence 345677789999999999999999874 4565544443222111110 0 0133344445555
Q ss_pred hcCcceEEEecCCcCCCcchhhhhh------------cccCC-CCCCcE--EEEEcCChhhHHhcCc----cceEeCCCC
Q 040015 277 LAGKKFLLVLDDVWSRRNDDWDLIC------------SPLKA-GARGSK--IIITTRDSSIAASMGT----VAAHHLECL 337 (1399)
Q Consensus 277 l~~~r~LlvlDdv~~~~~~~~~~l~------------~~l~~-~~~gs~--ilvTtR~~~v~~~~~~----~~~~~l~~L 337 (1399)
.++.--.||+||+.. --+|-.+. ..+.. ..+|-| |+-||....|.+.|+- ...|.++.+
T Consensus 595 YkS~lsiivvDdiEr--LiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl 672 (744)
T KOG0741|consen 595 YKSPLSIIVVDDIER--LLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNL 672 (744)
T ss_pred hcCcceEEEEcchhh--hhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCcc
Confidence 677778999999943 23443222 22221 123444 5668888889888863 367889998
Q ss_pred Cc-cchHHHHHHhh-hcCCCCCCCccHHHHHHHHHHHc
Q 040015 338 AF-EDCSSIFMNQA-FENRNTGISPDLETIGAEIVNKC 373 (1399)
Q Consensus 338 ~~-~~~~~lf~~~a-~~~~~~~~~~~~~~~~~~i~~~~ 373 (1399)
+. ++..+.+...- |. +.+.+.++.+.+.+|
T Consensus 673 ~~~~~~~~vl~~~n~fs------d~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 673 TTGEQLLEVLEELNIFS------DDEVRAIAEQLLSKK 704 (744)
T ss_pred CchHHHHHHHHHccCCC------cchhHHHHHHHhccc
Confidence 87 77777776543 22 234455666666666
No 186
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.88 E-value=0.014 Score=69.08 Aligned_cols=206 Identities=13% Similarity=0.099 Sum_probs=118.8
Q ss_pred CccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCcc------ccccccceEEEEeCCccCHH
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSR------VDGRFDLKVWVCVSDQFDVL 245 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~------~~~~f~~~~wv~~~~~~~~~ 245 (1399)
..+-+|+.|..+|.+++...=. .......+.|.|.+|+|||+.+..|.+... .-..|+ .+.|+.-.-..+.
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~--~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~ 472 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFIS--DQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPR 472 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcC--CCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHH
Confidence 3467899999999998865321 113355999999999999999999987422 112343 3455555666799
Q ss_pred HHHHHHHHHccCCCCCCCcchHHHHHHHHHHhc-----CcceEEEecCCcCCCcchhhhhhcccCC-CCCCcEEEEEcCC
Q 040015 246 RVTTTILKSVTSKPADVDDDLNLLQVCLREKLA-----GKKFLLVLDDVWSRRNDDWDLICSPLKA-GARGSKIIITTRD 319 (1399)
Q Consensus 246 ~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~-----~~r~LlvlDdv~~~~~~~~~~l~~~l~~-~~~gs~ilvTtR~ 319 (1399)
+++..|..++.+...... ...+.+..++. .+..++++|+++.--....+-+...|.| ..++||++|.+=.
T Consensus 473 ~~Y~~I~~~lsg~~~~~~----~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~Ia 548 (767)
T KOG1514|consen 473 EIYEKIWEALSGERVTWD----AALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIA 548 (767)
T ss_pred HHHHHHHHhcccCcccHH----HHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEec
Confidence 999999999988654332 33334444443 4467888888733111122334444443 4578886665421
Q ss_pred --hh---------hHHhcCccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCchhHHHHHHHH
Q 040015 320 --SS---------IAASMGTVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLLLAVKRMGII 386 (1399)
Q Consensus 320 --~~---------v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~ 386 (1399)
.+ |...+ ....+..+|-+.++-.++...+..+... -.....+-+|++|+.-.|..-.|+.+.-++
T Consensus 549 NTmdlPEr~l~nrvsSRl-g~tRi~F~pYth~qLq~Ii~~RL~~~~~-f~~~aielvarkVAavSGDaRraldic~RA 624 (767)
T KOG1514|consen 549 NTMDLPERLLMNRVSSRL-GLTRICFQPYTHEQLQEIISARLKGLDA-FENKAIELVARKVAAVSGDARRALDICRRA 624 (767)
T ss_pred ccccCHHHHhccchhhhc-cceeeecCCCCHHHHHHHHHHhhcchhh-cchhHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 11 11111 1245566666666666665554432211 122233444556655555555555554443
No 187
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.87 E-value=0.03 Score=61.94 Aligned_cols=56 Identities=20% Similarity=0.182 Sum_probs=35.1
Q ss_pred hHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHH
Q 040015 179 NDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVT 248 (1399)
Q Consensus 179 ~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 248 (1399)
+-++++..++..+ +-|.+.|.+|+|||++|+.+++ .... ..+++++....+..+++
T Consensus 9 ~l~~~~l~~l~~g---------~~vLL~G~~GtGKT~lA~~la~--~lg~---~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 9 RVTSRALRYLKSG---------YPVHLRGPAGTGKTTLAMHVAR--KRDR---PVMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHHHhcC---------CeEEEEcCCCCCHHHHHHHHHH--HhCC---CEEEEeCCccCCHHHHh
Confidence 3445555555433 2456899999999999999986 2222 23455555555544443
No 188
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.85 E-value=0.017 Score=64.89 Aligned_cols=96 Identities=10% Similarity=0.139 Sum_probs=64.4
Q ss_pred CcceEEEecCCcCCCcchhhhhhcccCCCCCCcEEEEEcCC-hhhHHhc-CccceEeCCCCCccchHHHHHHhhhcCCCC
Q 040015 279 GKKFLLVLDDVWSRRNDDWDLICSPLKAGARGSKIIITTRD-SSIAASM-GTVAAHHLECLAFEDCSSIFMNQAFENRNT 356 (1399)
Q Consensus 279 ~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 356 (1399)
+++=++|+|+++.-....-+.+...+..-..++.+|++|.. ..+...+ +.-..+.+.+++.+++.+.+.... .
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~---~-- 186 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG---V-- 186 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC---C--
Confidence 45668999999766555666676666655567777766664 3444333 334678999999999888886531 1
Q ss_pred CCCccHHHHHHHHHHHccCchhHHHHHH
Q 040015 357 GISPDLETIGAEIVNKCEGLLLAVKRMG 384 (1399)
Q Consensus 357 ~~~~~~~~~~~~i~~~~~g~PLai~~~~ 384 (1399)
+ +..+..++..++|.|+.+..+.
T Consensus 187 --~---~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 187 --S---ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred --C---hHHHHHHHHHcCCCHHHHHHHh
Confidence 1 1226678999999998765443
No 189
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.84 E-value=0.0019 Score=68.40 Aligned_cols=35 Identities=26% Similarity=0.371 Sum_probs=28.9
Q ss_pred EEEEEcCCCchHHHHHHHHhcCccccccccceEEEEe
Q 040015 202 VVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCV 238 (1399)
Q Consensus 202 vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~ 238 (1399)
.++|+|..|+||||++..+..+ ....|..+++++-
T Consensus 15 r~viIG~sGSGKT~li~~lL~~--~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYY--LRHKFDHIFLITP 49 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHh--hcccCCEEEEEec
Confidence 5679999999999999999874 5678877777654
No 190
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.82 E-value=0.015 Score=75.25 Aligned_cols=139 Identities=17% Similarity=0.234 Sum_probs=76.3
Q ss_pred CccccchhHHHHHHHHHhccCCC--CCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHH
Q 040015 172 SCVYGRENDKNAIVELLMVEDDS--SSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTT 249 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~--~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 249 (1399)
..++|.+..++.+...+.....+ .......++.++|+.|+|||++|+.+++... ..-...+.+.++.-.. .
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~--~~~~~~i~id~se~~~-~---- 640 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMF--DSDDAMVRIDMSEFME-K---- 640 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhh--cCCCcEEEEEhHHhhh-h----
Confidence 35899999999999988643200 0112245788999999999999999986321 1112234444443211 1
Q ss_pred HHHHHccCCCCCCCcchHHHHHHHHHHhcC-cceEEEecCCcCCCcchhhhhhcccCCC----C-------CCcEEEEEc
Q 040015 250 TILKSVTSKPADVDDDLNLLQVCLREKLAG-KKFLLVLDDVWSRRNDDWDLICSPLKAG----A-------RGSKIIITT 317 (1399)
Q Consensus 250 ~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~-~r~LlvlDdv~~~~~~~~~~l~~~l~~~----~-------~gs~ilvTt 317 (1399)
.....+.+..+.... .+. ...+.+.++. ..-+|+||++...+.+.+..+...+..+ + ..+-||+||
T Consensus 641 ~~~~~LiG~~pgy~g-~~~-~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TS 718 (857)
T PRK10865 641 HSVSRLVGAPPGYVG-YEE-GGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTS 718 (857)
T ss_pred hhHHHHhCCCCcccc-cch-hHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeC
Confidence 112222222211111 111 1122333322 3368999999776667777776665432 1 223377787
Q ss_pred CC
Q 040015 318 RD 319 (1399)
Q Consensus 318 R~ 319 (1399)
..
T Consensus 719 N~ 720 (857)
T PRK10865 719 NL 720 (857)
T ss_pred Cc
Confidence 65
No 191
>PRK08118 topology modulation protein; Reviewed
Probab=96.81 E-value=0.00061 Score=69.21 Aligned_cols=34 Identities=26% Similarity=0.549 Sum_probs=27.4
Q ss_pred EEEEEcCCCchHHHHHHHHhcCcccc-ccccceEE
Q 040015 202 VVPIVGMGGIGKTTVAQLVYNDSRVD-GRFDLKVW 235 (1399)
Q Consensus 202 vv~I~G~gG~GKTtLa~~v~~~~~~~-~~f~~~~w 235 (1399)
.|.|+|++|+||||+|+.+++..... -+||..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 57899999999999999999854443 45777776
No 192
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.80 E-value=0.0087 Score=70.10 Aligned_cols=119 Identities=22% Similarity=0.221 Sum_probs=75.1
Q ss_pred EEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHHHHccCCCCCCCcchHHHHHHHHHHhcCcc
Q 040015 202 VVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTILKSVTSKPADVDDDLNLLQVCLREKLAGKK 281 (1399)
Q Consensus 202 vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~~r 281 (1399)
++.|.|+-++||||+++.+...- .+. .+++...+...-..- ..+....+.+.-..++
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~--~~~---~iy~~~~d~~~~~~~------------------l~d~~~~~~~~~~~~~ 95 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGL--LEE---IIYINFDDLRLDRIE------------------LLDLLRAYIELKEREK 95 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhC--Ccc---eEEEEecchhcchhh------------------HHHHHHHHHHhhccCC
Confidence 99999999999999997777632 122 455544332111110 1111111111212278
Q ss_pred eEEEecCCcCCCcchhhhhhcccCCCCCCcEEEEEcCChhhH-----Hhc-CccceEeCCCCCccchHHHH
Q 040015 282 FLLVLDDVWSRRNDDWDLICSPLKAGARGSKIIITTRDSSIA-----ASM-GTVAAHHLECLAFEDCSSIF 346 (1399)
Q Consensus 282 ~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~-----~~~-~~~~~~~l~~L~~~~~~~lf 346 (1399)
..|+||.|.. ...|......+.+.++. +|++|+-+.... ... |....+++.||+..|...+-
T Consensus 96 ~yifLDEIq~--v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~ 163 (398)
T COG1373 96 SYIFLDEIQN--VPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLK 163 (398)
T ss_pred ceEEEecccC--chhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhc
Confidence 8999999955 46898887777776655 888888765432 222 34568899999998887654
No 193
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=96.77 E-value=0.012 Score=67.31 Aligned_cols=163 Identities=10% Similarity=0.054 Sum_probs=90.0
Q ss_pred cccc-chhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHH
Q 040015 173 CVYG-RENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTI 251 (1399)
Q Consensus 173 ~~vG-r~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 251 (1399)
.++| -+..++.+...+..+. -...+.++|+.|+||||+|+.+++..--....... .+..-...+.+
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~------l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~-------~cg~C~~c~~~ 72 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNR------LSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE-------PCGTCTNCKRI 72 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCC------CCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC-------CCCcCHHHHHH
Confidence 3566 6667778888775443 34567899999999999999987531100000000 00000011111
Q ss_pred HHHccC-----CCCCCCcchHHHHHHHHHH----hcCcceEEEecCCcCCCcchhhhhhcccCCCCCCcEEEEEcCCh-h
Q 040015 252 LKSVTS-----KPADVDDDLNLLQVCLREK----LAGKKFLLVLDDVWSRRNDDWDLICSPLKAGARGSKIIITTRDS-S 321 (1399)
Q Consensus 252 ~~~l~~-----~~~~~~~~~~~l~~~l~~~----l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~ 321 (1399)
...-.. ......-.++++...+... ..+.+=++|+|++..-.....+.+...+.....++.+|++|.++ .
T Consensus 73 ~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ 152 (329)
T PRK08058 73 DSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQ 152 (329)
T ss_pred hcCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHh
Confidence 000000 0000001133333332221 23455579999997666566777777777666677777777653 3
Q ss_pred hHHhc-CccceEeCCCCCccchHHHHHH
Q 040015 322 IAASM-GTVAAHHLECLAFEDCSSIFMN 348 (1399)
Q Consensus 322 v~~~~-~~~~~~~l~~L~~~~~~~lf~~ 348 (1399)
+...+ +....+++.+++.++..+.+.+
T Consensus 153 ll~TIrSRc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 153 ILPTILSRCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred CcHHHHhhceeeeCCCCCHHHHHHHHHH
Confidence 33332 3447899999999998887764
No 194
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.76 E-value=0.00024 Score=74.21 Aligned_cols=37 Identities=19% Similarity=0.282 Sum_probs=16.7
Q ss_pred CCcccEEEecCCCCcc---cCcccCCCCCCcEEeccCCcc
Q 040015 586 LKCLRVLSFSACRITA---LPDSVGDLKHLRYLDLSRTAI 622 (1399)
Q Consensus 586 l~~Lr~L~Ls~~~i~~---lp~~i~~L~~L~~L~Ls~n~i 622 (1399)
...++.|||.+|.|+. +-.-+.+|++|++|+|+.|.+
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L 109 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSL 109 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcC
Confidence 3445555555554442 112224445555555555443
No 195
>CHL00176 ftsH cell division protein; Validated
Probab=96.75 E-value=0.01 Score=73.19 Aligned_cols=178 Identities=15% Similarity=0.195 Sum_probs=95.1
Q ss_pred CccccchhHHHHHHH---HHhccCCC--CCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHH
Q 040015 172 SCVYGRENDKNAIVE---LLMVEDDS--SSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLR 246 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~---~L~~~~~~--~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 246 (1399)
.+++|.++.++++.+ ++.....- -+....+-|.++|++|+|||++|+.+++.. ... |+.++.. +
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~--~~p-----~i~is~s----~ 251 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA--EVP-----FFSISGS----E 251 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh--CCC-----eeeccHH----H
Confidence 457888766555544 44433210 011224568899999999999999998742 222 3333211 1
Q ss_pred HHHHHHHHccCCCCCCCcchHHHHHHHHHHhcCcceEEEecCCcCCC----------cchh----hhhhcccCC--CCCC
Q 040015 247 VTTTILKSVTSKPADVDDDLNLLQVCLREKLAGKKFLLVLDDVWSRR----------NDDW----DLICSPLKA--GARG 310 (1399)
Q Consensus 247 ~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~~r~LlvlDdv~~~~----------~~~~----~~l~~~l~~--~~~g 310 (1399)
+. ....+ .....+...+.......+.+|++||++.-. .+.+ ..+...+.. ...+
T Consensus 252 f~----~~~~g------~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ 321 (638)
T CHL00176 252 FV----EMFVG------VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKG 321 (638)
T ss_pred HH----HHhhh------hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCC
Confidence 11 11100 012333444455556778999999995321 1122 222222211 2345
Q ss_pred cEEEEEcCChhhHH-hc-C---ccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccC
Q 040015 311 SKIIITTRDSSIAA-SM-G---TVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEG 375 (1399)
Q Consensus 311 s~ilvTtR~~~v~~-~~-~---~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g 375 (1399)
..||.||...+... .+ . -...+.++..+.++-.++++.++-... . ........+++.+.|
T Consensus 322 ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~---~--~~d~~l~~lA~~t~G 386 (638)
T CHL00176 322 VIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKK---L--SPDVSLELIARRTPG 386 (638)
T ss_pred eeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcc---c--chhHHHHHHHhcCCC
Confidence 56777776644322 11 1 235678888888888888887764311 1 112235677888877
No 196
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.75 E-value=0.014 Score=75.04 Aligned_cols=52 Identities=25% Similarity=0.386 Sum_probs=39.3
Q ss_pred CCccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcC
Q 040015 171 ESCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
+.+++|.+..+++|.+++....-. .....+++.++|++|+|||++|+.+++.
T Consensus 319 ~~~~~G~~~~k~~i~~~~~~~~~~-~~~~~~~lll~GppG~GKT~lAk~iA~~ 370 (775)
T TIGR00763 319 DEDHYGLKKVKERILEYLAVQKLR-GKMKGPILCLVGPPGVGKTSLGKSIAKA 370 (775)
T ss_pred hhhcCChHHHHHHHHHHHHHHHhh-cCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 345899999999999877533100 1123458999999999999999999983
No 197
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.71 E-value=0.0017 Score=64.51 Aligned_cols=85 Identities=27% Similarity=0.341 Sum_probs=68.4
Q ss_pred ccCCCCcccEEEecCCCCcccCcccCC-CCCCcEEeccCCccccccc--cccCCCCCcEEEccCCCCCCCcCh----hhc
Q 040015 582 ILPRLKCLRVLSFSACRITALPDSVGD-LKHLRYLDLSRTAIKQLPD--STGNLCNLQSIILLECYSLSKLPT----DLG 654 (1399)
Q Consensus 582 ~~~~l~~Lr~L~Ls~~~i~~lp~~i~~-L~~L~~L~Ls~n~i~~lP~--~i~~L~~L~~L~L~~~~~~~~lP~----~i~ 654 (1399)
-|+.++.|.+|.|++|+|+.|...+.. +++|..|.|.+|+|.++-+ -+..++.|++|.+-+| .+...+. .+.
T Consensus 59 ~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~N-pv~~k~~YR~yvl~ 137 (233)
T KOG1644|consen 59 NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGN-PVEHKKNYRLYVLY 137 (233)
T ss_pred cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCC-chhcccCceeEEEE
Confidence 478899999999999999999545544 5779999999999997744 4678899999999998 4444433 278
Q ss_pred cCCCCCEEEccCC
Q 040015 655 NLTGLRHLRMSGS 667 (1399)
Q Consensus 655 ~L~~L~~L~l~~~ 667 (1399)
++++|+.||..+-
T Consensus 138 klp~l~~LDF~kV 150 (233)
T KOG1644|consen 138 KLPSLRTLDFQKV 150 (233)
T ss_pred ecCcceEeehhhh
Confidence 8999999998753
No 198
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.68 E-value=0.0044 Score=64.15 Aligned_cols=132 Identities=18% Similarity=0.221 Sum_probs=63.4
Q ss_pred cchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeC----Ccc--CHHH---
Q 040015 176 GRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVS----DQF--DVLR--- 246 (1399)
Q Consensus 176 Gr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~----~~~--~~~~--- 246 (1399)
.+..+-...++.|.. ..++.+.|++|.|||.||.+.+-+.-..++|+.++++.-. +.. -+-.
T Consensus 4 p~~~~Q~~~~~al~~---------~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~e 74 (205)
T PF02562_consen 4 PKNEEQKFALDALLN---------NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEE 74 (205)
T ss_dssp --SHHHHHHHHHHHH----------SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS------
T ss_pred CCCHHHHHHHHHHHh---------CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHH
Confidence 445566667777763 3489999999999999999988664445788888876421 110 0000
Q ss_pred ----HHHHHHHHccCCCCCCCcchHHHHHH------HHHHhcCc---ceEEEecCCcCCCcchhhhhhcccCCCCCCcEE
Q 040015 247 ----VTTTILKSVTSKPADVDDDLNLLQVC------LREKLAGK---KFLLVLDDVWSRRNDDWDLICSPLKAGARGSKI 313 (1399)
Q Consensus 247 ----~~~~i~~~l~~~~~~~~~~~~~l~~~------l~~~l~~~---r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~i 313 (1399)
.+.-+...+..-. ... ..+.+... --.+++|+ ...||+|++.+....++..+... .+.||||
T Consensus 75 K~~p~~~p~~d~l~~~~-~~~-~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR---~g~~ski 149 (205)
T PF02562_consen 75 KMEPYLRPIYDALEELF-GKE-KLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTR---IGEGSKI 149 (205)
T ss_dssp ---TTTHHHHHHHTTTS--TT-CHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTT---B-TT-EE
T ss_pred HHHHHHHHHHHHHHHHh-ChH-hHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHcc---cCCCcEE
Confidence 0111111111100 000 12222210 01123444 35899999977666666666544 4678999
Q ss_pred EEEcCChh
Q 040015 314 IITTRDSS 321 (1399)
Q Consensus 314 lvTtR~~~ 321 (1399)
|++=-..+
T Consensus 150 i~~GD~~Q 157 (205)
T PF02562_consen 150 IITGDPSQ 157 (205)
T ss_dssp EEEE----
T ss_pred EEecCcee
Confidence 99876543
No 199
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.64 E-value=0.028 Score=68.69 Aligned_cols=209 Identities=13% Similarity=0.169 Sum_probs=104.0
Q ss_pred CCccccchhHHHHHHHHHh---ccCC--CCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHH
Q 040015 171 ESCVYGRENDKNAIVELLM---VEDD--SSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVL 245 (1399)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~---~~~~--~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 245 (1399)
-.+++|-++.++++.+++. .... ..+....+-+.++|++|+|||++|+.+++.. ... ++.++..
T Consensus 54 ~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~--~~~-----~~~i~~~---- 122 (495)
T TIGR01241 54 FKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA--GVP-----FFSISGS---- 122 (495)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc--CCC-----eeeccHH----
Confidence 3468898877666555443 2110 0011223457899999999999999999742 222 2333211
Q ss_pred HHHHHHHHHccCCCCCCCcchHHHHHHHHHHhcCcceEEEecCCcCCC----------cchhhh----hhcccC--CCCC
Q 040015 246 RVTTTILKSVTSKPADVDDDLNLLQVCLREKLAGKKFLLVLDDVWSRR----------NDDWDL----ICSPLK--AGAR 309 (1399)
Q Consensus 246 ~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~~r~LlvlDdv~~~~----------~~~~~~----l~~~l~--~~~~ 309 (1399)
++. ....+. ....+...+.......+.+|++||++.-. .+.+.. +...+. ....
T Consensus 123 ~~~----~~~~g~------~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~ 192 (495)
T TIGR01241 123 DFV----EMFVGV------GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNT 192 (495)
T ss_pred HHH----HHHhcc------cHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCC
Confidence 111 111110 12333344444445567899999984421 011222 211111 1223
Q ss_pred CcEEEEEcCChhhH-Hhc----CccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCch-hHHHHH
Q 040015 310 GSKIIITTRDSSIA-ASM----GTVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLL-LAVKRM 383 (1399)
Q Consensus 310 gs~ilvTtR~~~v~-~~~----~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~P-Lai~~~ 383 (1399)
+..||.||...... ..+ .-...+.++..+.++-.++|..+.-.... .++ .....+++.+.|.- -.|..+
T Consensus 193 ~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~---~~~--~~l~~la~~t~G~sgadl~~l 267 (495)
T TIGR01241 193 GVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKL---APD--VDLKAVARRTPGFSGADLANL 267 (495)
T ss_pred CeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCC---Ccc--hhHHHHHHhCCCCCHHHHHHH
Confidence 45566677654321 111 12356888888877778888776532211 111 12447788887743 333333
Q ss_pred HH---H--HhcC---CChHHHHHHHhhhcc
Q 040015 384 GI---I--LRSR---EDKGEWYDMLNRNIW 405 (1399)
Q Consensus 384 ~~---~--l~~~---~~~~~w~~~l~~~~~ 405 (1399)
.. . .+.+ -+.++...++++..+
T Consensus 268 ~~eA~~~a~~~~~~~i~~~~l~~a~~~~~~ 297 (495)
T TIGR01241 268 LNEAALLAARKNKTEITMNDIEEAIDRVIA 297 (495)
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHhc
Confidence 21 1 1111 245666666665443
No 200
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.64 E-value=0.0049 Score=78.74 Aligned_cols=122 Identities=15% Similarity=0.233 Sum_probs=71.2
Q ss_pred CccccchhHHHHHHHHHhccCCC--CCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHH
Q 040015 172 SCVYGRENDKNAIVELLMVEDDS--SSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTT 249 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~--~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 249 (1399)
..++|.+..++.|...+....-. .......++.++|+.|+|||++|+.++.. . +...+.++.+.-.....
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~--l---~~~~~~~d~se~~~~~~--- 525 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEA--L---GVHLERFDMSEYMEKHT--- 525 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHH--h---cCCeEEEeCchhhhccc---
Confidence 45889999999999888743100 01123557889999999999999999873 2 23345555544222111
Q ss_pred HHHHHccCCCCC-CCcchHHHHHHHHHHhcCc-ceEEEecCCcCCCcchhhhhhcccCC
Q 040015 250 TILKSVTSKPAD-VDDDLNLLQVCLREKLAGK-KFLLVLDDVWSRRNDDWDLICSPLKA 306 (1399)
Q Consensus 250 ~i~~~l~~~~~~-~~~~~~~l~~~l~~~l~~~-r~LlvlDdv~~~~~~~~~~l~~~l~~ 306 (1399)
+...++..... ..+....+ .+.++.+ .-+++||+++..+.+.++.+...+..
T Consensus 526 -~~~lig~~~gyvg~~~~~~l----~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~ 579 (731)
T TIGR02639 526 -VSRLIGAPPGYVGFEQGGLL----TEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDY 579 (731)
T ss_pred -HHHHhcCCCCCcccchhhHH----HHHHHhCCCeEEEEechhhcCHHHHHHHHHhhcc
Confidence 11112211111 11112223 3333333 45999999988777777777776654
No 201
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.61 E-value=0.012 Score=66.43 Aligned_cols=103 Identities=17% Similarity=0.187 Sum_probs=63.8
Q ss_pred HHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccc-eEEEEeCCc-cCHHHHHHHHHHHccC
Q 040015 180 DKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDL-KVWVCVSDQ-FDVLRVTTTILKSVTS 257 (1399)
Q Consensus 180 ~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~-~~wv~~~~~-~~~~~~~~~i~~~l~~ 257 (1399)
-..++++.+..-. ....+.|+|..|+|||||++++++... ..+-+. ++|+.+.+. ..+.++.+.+...+..
T Consensus 119 ~~~RvID~l~PiG------kGQR~LIvG~pGtGKTTLl~~la~~i~-~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vva 191 (380)
T PRK12608 119 LSMRVVDLVAPIG------KGQRGLIVAPPRAGKTVLLQQIAAAVA-ANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYA 191 (380)
T ss_pred hhHhhhhheeecC------CCceEEEECCCCCCHHHHHHHHHHHHH-hcCCCceEEEEEecCCCCCHHHHHHHHhhhEEe
Confidence 3455778776432 234558999999999999999887422 122233 467666554 5677888888877765
Q ss_pred CCCCCCcc----hHHHHHHHHHHh--cCcceEEEecCC
Q 040015 258 KPADVDDD----LNLLQVCLREKL--AGKKFLLVLDDV 289 (1399)
Q Consensus 258 ~~~~~~~~----~~~l~~~l~~~l--~~~r~LlvlDdv 289 (1399)
...+.... .......+-+++ ++++++||+|++
T Consensus 192 st~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsl 229 (380)
T PRK12608 192 STFDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSL 229 (380)
T ss_pred ecCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 43222220 111111222222 589999999999
No 202
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.60 E-value=0.021 Score=57.73 Aligned_cols=139 Identities=15% Similarity=0.217 Sum_probs=76.9
Q ss_pred cchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCc---ccc---------------ccccceEEEE
Q 040015 176 GRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDS---RVD---------------GRFDLKVWVC 237 (1399)
Q Consensus 176 Gr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~---~~~---------------~~f~~~~wv~ 237 (1399)
|-++..+.+...+..+. -...+.++|..|+||+++|..+++.. ... ....-..|+.
T Consensus 1 gq~~~~~~L~~~~~~~~------l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~ 74 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGR------LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIK 74 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--------SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEE
T ss_pred CcHHHHHHHHHHHHcCC------cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEe
Confidence 55667777777776543 24467899999999999999987631 111 1122233333
Q ss_pred eCCc---cCHHHHHHHHHHHccCCCCCCCcchHHHHHHHHHHhcCcceEEEecCCcCCCcchhhhhhcccCCCCCCcEEE
Q 040015 238 VSDQ---FDVLRVTTTILKSVTSKPADVDDDLNLLQVCLREKLAGKKFLLVLDDVWSRRNDDWDLICSPLKAGARGSKII 314 (1399)
Q Consensus 238 ~~~~---~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~il 314 (1399)
-... ..++++ +++.+.+.... ..+++=++|+||++.-..+.++.+...+.....++++|
T Consensus 75 ~~~~~~~i~i~~i-r~i~~~~~~~~-----------------~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fi 136 (162)
T PF13177_consen 75 PDKKKKSIKIDQI-REIIEFLSLSP-----------------SEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFI 136 (162)
T ss_dssp TTTSSSSBSHHHH-HHHHHHCTSS------------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEE
T ss_pred cccccchhhHHHH-HHHHHHHHHHH-----------------hcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEE
Confidence 2221 122111 13332222211 12345589999998877788888888887777888988
Q ss_pred EEcCChh-hHHhc-CccceEeCCCCC
Q 040015 315 ITTRDSS-IAASM-GTVAAHHLECLA 338 (1399)
Q Consensus 315 vTtR~~~-v~~~~-~~~~~~~l~~L~ 338 (1399)
++|++.. +.... +.-..+.+.+++
T Consensus 137 L~t~~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 137 LITNNPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp EEES-GGGS-HHHHTTSEEEEE----
T ss_pred EEECChHHChHHHHhhceEEecCCCC
Confidence 8888754 33332 333556666553
No 203
>PRK08181 transposase; Validated
Probab=96.60 E-value=0.0081 Score=65.71 Aligned_cols=101 Identities=18% Similarity=0.130 Sum_probs=54.9
Q ss_pred EEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHHHHccCCCCCCCcchHHHHHHHHHHhcCc
Q 040015 201 SVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTILKSVTSKPADVDDDLNLLQVCLREKLAGK 280 (1399)
Q Consensus 201 ~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~~ 280 (1399)
.-+.++|++|+|||.||..+.+.. ......++|+.+ .+++.++..... + ...+... .. + .+
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a--~~~g~~v~f~~~------~~L~~~l~~a~~----~--~~~~~~l---~~-l-~~ 167 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLAL--IENGWRVLFTRT------TDLVQKLQVARR----E--LQLESAI---AK-L-DK 167 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHH--HHcCCceeeeeH------HHHHHHHHHHHh----C--CcHHHHH---HH-H-hc
Confidence 358899999999999999998742 222334566643 344444433211 0 1122222 22 2 23
Q ss_pred ceEEEecCCcCCCcchhh--hhhcccCCCCCCcEEEEEcCCh
Q 040015 281 KFLLVLDDVWSRRNDDWD--LICSPLKAGARGSKIIITTRDS 320 (1399)
Q Consensus 281 r~LlvlDdv~~~~~~~~~--~l~~~l~~~~~gs~ilvTtR~~ 320 (1399)
-=|||+||+.....+.|. .+...+.....+..+||||...
T Consensus 168 ~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 168 FDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 459999999654333332 2333332211123588888753
No 204
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.57 E-value=0.003 Score=66.31 Aligned_cols=63 Identities=17% Similarity=0.154 Sum_probs=44.4
Q ss_pred cCCCCCCceEeecCCCCCcccCCCCCCCCCccceecccccC-CccCccccccCCCcceEeecCC
Q 040015 1225 LHNLAFLDHLEIDDCPLLQSFPEPCLPTSMLRYARISNCQN-LKFLPNGMYILTSLQEFSIHGC 1287 (1399)
Q Consensus 1225 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~-l~~lp~~~~~l~~L~~L~l~~c 1287 (1399)
+.++|.|++|+|+.|+....+...-.+..+|++|-|.+... .+.....+..+|.++.|.++.+
T Consensus 93 le~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 93 LEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred HhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence 68899999999999987665554446778999999877321 1122334556788888877774
No 205
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.57 E-value=0.0069 Score=67.92 Aligned_cols=122 Identities=13% Similarity=0.165 Sum_probs=71.3
Q ss_pred cchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHHHHc
Q 040015 176 GRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTILKSV 255 (1399)
Q Consensus 176 Gr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 255 (1399)
+|....+...+++..-. .....+-+.++|..|+|||.||.++++... +.. ..+.+++++ .++.++....
T Consensus 135 ~~~~~~~~~~~fi~~~~---~~~~~~gl~L~G~~G~GKThLa~Aia~~l~-~~g-~~v~~~~~~------~l~~~lk~~~ 203 (306)
T PRK08939 135 DRLDALMAALDFLEAYP---PGEKVKGLYLYGDFGVGKSYLLAAIANELA-KKG-VSSTLLHFP------EFIRELKNSI 203 (306)
T ss_pred HHHHHHHHHHHHHHHhh---ccCCCCeEEEECCCCCCHHHHHHHHHHHHH-HcC-CCEEEEEHH------HHHHHHHHHH
Confidence 55555666666665432 112346788999999999999999998532 222 235566553 4455554443
Q ss_pred cCCCCCCCcchHHHHHHHHHHhcCcceEEEecCCcCCCcchhhh--hhccc-CCC-CCCcEEEEEcCC
Q 040015 256 TSKPADVDDDLNLLQVCLREKLAGKKFLLVLDDVWSRRNDDWDL--ICSPL-KAG-ARGSKIIITTRD 319 (1399)
Q Consensus 256 ~~~~~~~~~~~~~l~~~l~~~l~~~r~LlvlDdv~~~~~~~~~~--l~~~l-~~~-~~gs~ilvTtR~ 319 (1399)
... .... .+.. + .+-=||||||+.-+....|.. +...+ ... ..+-.+|+||--
T Consensus 204 ~~~------~~~~---~l~~-l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 204 SDG------SVKE---KIDA-V-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred hcC------cHHH---HHHH-h-cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 211 1222 2222 2 245689999997776677864 44433 221 234568888874
No 206
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.54 E-value=0.0078 Score=64.75 Aligned_cols=103 Identities=16% Similarity=0.199 Sum_probs=57.1
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHHHHccCCCCCCCcchHHHHHHHHHHhcC
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTILKSVTSKPADVDDDLNLLQVCLREKLAG 279 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~ 279 (1399)
...+.++|.+|+|||+||.++++... ..-..++++++ .+++..+-..... .....+. +.+.+.
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~--~~g~~v~~it~------~~l~~~l~~~~~~----~~~~~~~----~l~~l~- 161 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELL--LRGKSVLIITV------ADIMSAMKDTFSN----SETSEEQ----LLNDLS- 161 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEEH------HHHHHHHHHHHhh----ccccHHH----HHHHhc-
Confidence 35788999999999999999998532 22234555543 3444444333321 1111222 222344
Q ss_pred cceEEEecCCcCCCcchhhh--hhcccCCC-CCCcEEEEEcCC
Q 040015 280 KKFLLVLDDVWSRRNDDWDL--ICSPLKAG-ARGSKIIITTRD 319 (1399)
Q Consensus 280 ~r~LlvlDdv~~~~~~~~~~--l~~~l~~~-~~gs~ilvTtR~ 319 (1399)
+.=+||+||+......+|+. +...+... ...-.+||||.-
T Consensus 162 ~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 162 NVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred cCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 34588999997766566764 22222211 122347777764
No 207
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.54 E-value=0.0056 Score=78.70 Aligned_cols=138 Identities=20% Similarity=0.288 Sum_probs=76.9
Q ss_pred CccccchhHHHHHHHHHhccCCC--CCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHH
Q 040015 172 SCVYGRENDKNAIVELLMVEDDS--SSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTT 249 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~--~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 249 (1399)
..++|.+..++.+.+.+.....+ .......++.++|+.|+|||.+|+.++.. .-+.....+-++++.-.+.
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~--l~~~~~~~~~~dmse~~~~----- 638 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAEL--LYGGEQNLITINMSEFQEA----- 638 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHH--HhCCCcceEEEeHHHhhhh-----
Confidence 46899999999999998653100 01234568899999999999999988763 2111122222333321111
Q ss_pred HHHHHccCCCCC-CC-cchHHHHHHHHHHhcCcceEEEecCCcCCCcchhhhhhcccCCCC-----------CCcEEEEE
Q 040015 250 TILKSVTSKPAD-VD-DDLNLLQVCLREKLAGKKFLLVLDDVWSRRNDDWDLICSPLKAGA-----------RGSKIIIT 316 (1399)
Q Consensus 250 ~i~~~l~~~~~~-~~-~~~~~l~~~l~~~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvT 316 (1399)
.-...+.+.... .. +....+...++ +...-+|+||++...+.+.++.+...+..+. ..+-||+|
T Consensus 639 ~~~~~l~g~~~gyvg~~~~g~L~~~v~---~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~T 715 (852)
T TIGR03345 639 HTVSRLKGSPPGYVGYGEGGVLTEAVR---RKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLT 715 (852)
T ss_pred hhhccccCCCCCcccccccchHHHHHH---hCCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEe
Confidence 111122221111 11 11122333333 2455699999997777777777766665432 34556666
Q ss_pred cCC
Q 040015 317 TRD 319 (1399)
Q Consensus 317 tR~ 319 (1399)
|.-
T Consensus 716 SNl 718 (852)
T TIGR03345 716 SNA 718 (852)
T ss_pred CCC
Confidence 653
No 208
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.52 E-value=0.01 Score=77.17 Aligned_cols=125 Identities=15% Similarity=0.212 Sum_probs=71.4
Q ss_pred CccccchhHHHHHHHHHhccCCC--CCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHH
Q 040015 172 SCVYGRENDKNAIVELLMVEDDS--SSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTT 249 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~--~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 249 (1399)
..++|.+..++.+...+.....+ .......++.++|+.|+|||++|+.++... -..-...+.++++.-.....
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l--~~~~~~~i~~d~s~~~~~~~--- 639 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFL--FDDEDAMVRIDMSEYMEKHS--- 639 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh--cCCCCcEEEEechhhcccch---
Confidence 45899999999999999753200 011235678899999999999999999732 11112334444443222111
Q ss_pred HHHHHccCCCCCCC--cchHHHHHHHHHHhcCcceEEEecCCcCCCcchhhhhhcccCC
Q 040015 250 TILKSVTSKPADVD--DDLNLLQVCLREKLAGKKFLLVLDDVWSRRNDDWDLICSPLKA 306 (1399)
Q Consensus 250 ~i~~~l~~~~~~~~--~~~~~l~~~l~~~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~ 306 (1399)
...+.+..+... +....+...++ +....+|+||++.....+.++.+...+..
T Consensus 640 --~~~l~g~~~g~~g~~~~g~l~~~v~---~~p~~vlllDeieka~~~v~~~Ll~~l~~ 693 (852)
T TIGR03346 640 --VARLIGAPPGYVGYEEGGQLTEAVR---RKPYSVVLFDEVEKAHPDVFNVLLQVLDD 693 (852)
T ss_pred --HHHhcCCCCCccCcccccHHHHHHH---cCCCcEEEEeccccCCHHHHHHHHHHHhc
Confidence 111211111111 00122333222 22334899999988777788877776644
No 209
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.52 E-value=0.012 Score=60.29 Aligned_cols=122 Identities=22% Similarity=0.260 Sum_probs=71.8
Q ss_pred CCCCccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHH
Q 040015 169 VDESCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVT 248 (1399)
Q Consensus 169 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 248 (1399)
++-..++|.|..++.+++--..-- .+...--|.+||.-|+|||.|++++.+ .+.+..-. -|.|.+. ++
T Consensus 57 i~L~~l~Gvd~qk~~L~~NT~~F~---~G~pANnVLLwGaRGtGKSSLVKA~~~--e~~~~glr--LVEV~k~----dl- 124 (287)
T COG2607 57 IDLADLVGVDRQKEALVRNTEQFA---EGLPANNVLLWGARGTGKSSLVKALLN--EYADEGLR--LVEVDKE----DL- 124 (287)
T ss_pred cCHHHHhCchHHHHHHHHHHHHHH---cCCcccceEEecCCCCChHHHHHHHHH--HHHhcCCe--EEEEcHH----HH-
Confidence 344568999998888876443211 112244678999999999999999998 34343322 2333221 00
Q ss_pred HHHHHHccCCCCCCCcchHHHHHHHHHHhcCcceEEEecCCcCC-CcchhhhhhcccCCCC---CCcEEEEEcCC
Q 040015 249 TTILKSVTSKPADVDDDLNLLQVCLREKLAGKKFLLVLDDVWSR-RNDDWDLICSPLKAGA---RGSKIIITTRD 319 (1399)
Q Consensus 249 ~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~~r~LlvlDdv~~~-~~~~~~~l~~~l~~~~---~gs~ilvTtR~ 319 (1399)
. +...+...++. ..+||.|..||..-+ +.+.+..++..+..+- +...++..|.+
T Consensus 125 --------------~-~Lp~l~~~Lr~--~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSN 182 (287)
T COG2607 125 --------------A-TLPDLVELLRA--RPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSN 182 (287)
T ss_pred --------------h-hHHHHHHHHhc--CCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecC
Confidence 0 02222222222 367999999998544 3457788888876542 33344444444
No 210
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.50 E-value=0.0016 Score=67.94 Aligned_cols=107 Identities=23% Similarity=0.232 Sum_probs=61.4
Q ss_pred cCCCCcccEEEecCCCCcccCcccCCCCCCcEEeccCC--ccc-cccccccCCCCCcEEEccCCCC--CCCcChhhccCC
Q 040015 583 LPRLKCLRVLSFSACRITALPDSVGDLKHLRYLDLSRT--AIK-QLPDSTGNLCNLQSIILLECYS--LSKLPTDLGNLT 657 (1399)
Q Consensus 583 ~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~Ls~n--~i~-~lP~~i~~L~~L~~L~L~~~~~--~~~lP~~i~~L~ 657 (1399)
+..+..|..|++.+..++++ ..+-.|++|++|.++.| .+. .++....++++|++|++++|+. +..++ .+.++.
T Consensus 39 ~d~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~~l~ 116 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLKELE 116 (260)
T ss_pred cccccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc-hhhhhc
Confidence 34455556666666555544 23445667777777777 333 4444455557777777777732 12222 255667
Q ss_pred CCCEEEccCCcccccCcc----ccCCCCCCccCceeeC
Q 040015 658 GLRHLRMSGSRLREMPMK----MYKLKNLQTLSHFVVG 691 (1399)
Q Consensus 658 ~L~~L~l~~~~l~~lp~~----i~~L~~L~~L~~~~~~ 691 (1399)
+|..|++.+|..+.+-.. +.-+++|..|+.+.+.
T Consensus 117 nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 117 NLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred chhhhhcccCCccccccHHHHHHHHhhhhccccccccC
Confidence 777777777765443211 4556777777766554
No 211
>PRK12377 putative replication protein; Provisional
Probab=96.47 E-value=0.0049 Score=66.45 Aligned_cols=102 Identities=21% Similarity=0.160 Sum_probs=56.9
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHHHHccCCCCCCCcchHHHHHHHHHHhcC
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTILKSVTSKPADVDDDLNLLQVCLREKLAG 279 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~ 279 (1399)
...+.++|..|+|||.||.++++.. ......++++++. +++..+-..... ... .... +. .+ .
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l--~~~g~~v~~i~~~------~l~~~l~~~~~~----~~~-~~~~---l~-~l-~ 162 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRL--LAKGRSVIVVTVP------DVMSRLHESYDN----GQS-GEKF---LQ-EL-C 162 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH--HHcCCCeEEEEHH------HHHHHHHHHHhc----cch-HHHH---HH-Hh-c
Confidence 3578999999999999999999853 2333345666553 344444333211 101 1121 22 22 3
Q ss_pred cceEEEecCCcCCCcchhhh--hhcccCCC-CCCcEEEEEcCC
Q 040015 280 KKFLLVLDDVWSRRNDDWDL--ICSPLKAG-ARGSKIIITTRD 319 (1399)
Q Consensus 280 ~r~LlvlDdv~~~~~~~~~~--l~~~l~~~-~~gs~ilvTtR~ 319 (1399)
+--||||||+.......|.. +...+... .+.--+||||-.
T Consensus 163 ~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 163 KVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred CCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 45699999996554455543 33333221 122336778764
No 212
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.47 E-value=0.065 Score=60.32 Aligned_cols=178 Identities=7% Similarity=-0.002 Sum_probs=99.3
Q ss_pred HHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHHHHccC--
Q 040015 180 DKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTILKSVTS-- 257 (1399)
Q Consensus 180 ~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~-- 257 (1399)
..+.+...+..+. -...+.+.|+.|+||+++|+.++...-=..... ...++.-...+.+...-..
T Consensus 10 ~~~~l~~~~~~~r------l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~-------~~~Cg~C~sC~~~~~g~HPD~ 76 (325)
T PRK06871 10 TYQQITQAFQQGL------GHHALLFKADSGLGTEQLIRALAQWLMCQTPQG-------DQPCGQCHSCHLFQAGNHPDF 76 (325)
T ss_pred HHHHHHHHHHcCC------cceeEEeECCCCCCHHHHHHHHHHHHcCCCCCC-------CCCCCCCHHHHHHhcCCCCCE
Confidence 3455666665432 245677899999999999999975210000000 0000000111111110000
Q ss_pred ----CCCCCCcchHHHHHHHHHHh-----cCcceEEEecCCcCCCcchhhhhhcccCCCCCCcEEEEEcCCh-hhHHhc-
Q 040015 258 ----KPADVDDDLNLLQVCLREKL-----AGKKFLLVLDDVWSRRNDDWDLICSPLKAGARGSKIIITTRDS-SIAASM- 326 (1399)
Q Consensus 258 ----~~~~~~~~~~~l~~~l~~~l-----~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~~~- 326 (1399)
+.....-.++++.+. .+.+ .+++=++|+|+++.-.....+.+...+..-..++.+|++|.+. .+...+
T Consensus 77 ~~i~p~~~~~I~id~iR~l-~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~ 155 (325)
T PRK06871 77 HILEPIDNKDIGVDQVREI-NEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIY 155 (325)
T ss_pred EEEccccCCCCCHHHHHHH-HHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHH
Confidence 000000113443332 2222 3556688899997766677788877777666677777776654 444333
Q ss_pred CccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCchhHH
Q 040015 327 GTVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLLLAV 380 (1399)
Q Consensus 327 ~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 380 (1399)
+.-..+.+.++++++..+.+..... . + ...+...+..++|.|+.+
T Consensus 156 SRC~~~~~~~~~~~~~~~~L~~~~~---~----~--~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 156 SRCQTWLIHPPEEQQALDWLQAQSS---A----E--ISEILTALRINYGRPLLA 200 (325)
T ss_pred hhceEEeCCCCCHHHHHHHHHHHhc---c----C--hHHHHHHHHHcCCCHHHH
Confidence 3346899999999999988876531 1 1 112556788999999644
No 213
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.45 E-value=0.0097 Score=77.10 Aligned_cols=138 Identities=18% Similarity=0.239 Sum_probs=76.7
Q ss_pred CccccchhHHHHHHHHHhccCCC--CCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHH
Q 040015 172 SCVYGRENDKNAIVELLMVEDDS--SSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTT 249 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~--~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 249 (1399)
..++|-+..++.|...+....-+ .......++.++|+.|+|||+||+.+++. .-+.-...+-++.+.-.+...+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~--l~~~~~~~~~~d~s~~~~~~~~-- 584 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASY--FFGSEDAMIRLDMSEYMEKHTV-- 584 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHH--hcCCccceEEEEchhccccccH--
Confidence 46899999999999988643200 01223456779999999999999999862 1111122333444432221111
Q ss_pred HHHHHccCCCCC-CCcchHHHHHHHHHHhcCcc-eEEEecCCcCCCcchhhhhhcccCCC-----------CCCcEEEEE
Q 040015 250 TILKSVTSKPAD-VDDDLNLLQVCLREKLAGKK-FLLVLDDVWSRRNDDWDLICSPLKAG-----------ARGSKIIIT 316 (1399)
Q Consensus 250 ~i~~~l~~~~~~-~~~~~~~l~~~l~~~l~~~r-~LlvlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~ilvT 316 (1399)
..-++.+..- ..+.... +.+.++.++ -+++||++...+.+.++.+...+..+ -..+-||+|
T Consensus 585 --~~l~g~~~gyvg~~~~~~----l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~T 658 (821)
T CHL00095 585 --SKLIGSPPGYVGYNEGGQ----LTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMT 658 (821)
T ss_pred --HHhcCCCCcccCcCccch----HHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEe
Confidence 1111211110 1111222 334444444 58889999877777777777766543 134456666
Q ss_pred cCC
Q 040015 317 TRD 319 (1399)
Q Consensus 317 tR~ 319 (1399)
|..
T Consensus 659 sn~ 661 (821)
T CHL00095 659 SNL 661 (821)
T ss_pred CCc
Confidence 664
No 214
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.45 E-value=0.061 Score=60.35 Aligned_cols=93 Identities=11% Similarity=0.082 Sum_probs=65.0
Q ss_pred CcceEEEecCCcCCCcchhhhhhcccCCCCCCcEEEEEcCC-hhhHHhc-CccceEeCCCCCccchHHHHHHhhhcCCCC
Q 040015 279 GKKFLLVLDDVWSRRNDDWDLICSPLKAGARGSKIIITTRD-SSIAASM-GTVAAHHLECLAFEDCSSIFMNQAFENRNT 356 (1399)
Q Consensus 279 ~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 356 (1399)
+++=++|+|++..-.....+.+...+..-..++.+|++|.+ ..+...+ +.-..+.+.+++.+++.+.+.... .
T Consensus 107 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~----~- 181 (319)
T PRK06090 107 NGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQG----I- 181 (319)
T ss_pred CCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcC----C-
Confidence 44558899999776667788887777666667776666655 3444433 344688999999999988886531 1
Q ss_pred CCCccHHHHHHHHHHHccCchhHHHHH
Q 040015 357 GISPDLETIGAEIVNKCEGLLLAVKRM 383 (1399)
Q Consensus 357 ~~~~~~~~~~~~i~~~~~g~PLai~~~ 383 (1399)
. .+..+++.++|.|+.+..+
T Consensus 182 --~-----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 182 --T-----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred --c-----hHHHHHHHcCCCHHHHHHH
Confidence 1 1356789999999877544
No 215
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.41 E-value=0.011 Score=64.15 Aligned_cols=47 Identities=15% Similarity=0.189 Sum_probs=35.6
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHH
Q 040015 198 NNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRV 247 (1399)
Q Consensus 198 ~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 247 (1399)
....++.|+|.+|+|||++|.+++.+. ...-..++|++.. .++...+
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~~--~~~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVEA--AKNGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEECC-CCCHHHH
Confidence 346799999999999999999998742 2334678899887 5555443
No 216
>PRK06526 transposase; Provisional
Probab=96.35 E-value=0.005 Score=67.03 Aligned_cols=100 Identities=20% Similarity=0.184 Sum_probs=52.4
Q ss_pred EEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHHHHccCCCCCCCcchHHHHHHHHHHhcCc
Q 040015 201 SVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTILKSVTSKPADVDDDLNLLQVCLREKLAGK 280 (1399)
Q Consensus 201 ~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~~ 280 (1399)
.-+.|+|++|+|||+||..+.+... +..+ .+.|+ +..+++.++...... ..+...+.+. .+
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~-~~g~-~v~f~------t~~~l~~~l~~~~~~---------~~~~~~l~~l--~~ 159 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRAC-QAGH-RVLFA------TAAQWVARLAAAHHA---------GRLQAELVKL--GR 159 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHH-HCCC-chhhh------hHHHHHHHHHHHHhc---------CcHHHHHHHh--cc
Confidence 4578999999999999999987432 1222 23343 233444444332110 1111223222 23
Q ss_pred ceEEEecCCcCCCcchhh--hhhcccCC-CCCCcEEEEEcCCh
Q 040015 281 KFLLVLDDVWSRRNDDWD--LICSPLKA-GARGSKIIITTRDS 320 (1399)
Q Consensus 281 r~LlvlDdv~~~~~~~~~--~l~~~l~~-~~~gs~ilvTtR~~ 320 (1399)
.-+||+||+.....+.|. .+...+.. ...++ +|+||..+
T Consensus 160 ~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s-~IitSn~~ 201 (254)
T PRK06526 160 YPLLIVDEVGYIPFEPEAANLFFQLVSSRYERAS-LIVTSNKP 201 (254)
T ss_pred CCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCC-EEEEcCCC
Confidence 458999999654322332 23333221 12344 88888854
No 217
>PRK07261 topology modulation protein; Provisional
Probab=96.32 E-value=0.0087 Score=61.20 Aligned_cols=65 Identities=17% Similarity=0.196 Sum_probs=39.3
Q ss_pred EEEEEcCCCchHHHHHHHHhcCcccc-ccccceEEEEeCCccCHHHHHHHHHHHccCCCCCCCcchHHHHHHHHHHhcCc
Q 040015 202 VVPIVGMGGIGKTTVAQLVYNDSRVD-GRFDLKVWVCVSDQFDVLRVTTTILKSVTSKPADVDDDLNLLQVCLREKLAGK 280 (1399)
Q Consensus 202 vv~I~G~gG~GKTtLa~~v~~~~~~~-~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~~ 280 (1399)
.|.|+|++|+||||||+++....... -+.|...|-.... .. +.++....+.+.+.+.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~~---------------------~~-~~~~~~~~~~~~~~~~ 59 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNWQ---------------------ER-DDDDMIADISNFLLKH 59 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccccc---------------------cC-CHHHHHHHHHHHHhCC
Confidence 47899999999999999998642221 2345555521100 11 1344555566666665
Q ss_pred ceEEEecCCc
Q 040015 281 KFLLVLDDVW 290 (1399)
Q Consensus 281 r~LlvlDdv~ 290 (1399)
+ .|+|+..
T Consensus 60 ~--wIidg~~ 67 (171)
T PRK07261 60 D--WIIDGNY 67 (171)
T ss_pred C--EEEcCcc
Confidence 5 6778873
No 218
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.29 E-value=0.004 Score=69.77 Aligned_cols=51 Identities=14% Similarity=0.245 Sum_probs=42.4
Q ss_pred CccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcC
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
.+++|.++.++++++++...... .+...+++.++|++|+||||||+.+++.
T Consensus 51 ~~~~G~~~~i~~lv~~l~~~a~g-~~~~r~il~L~GPPGsGKStla~~La~~ 101 (361)
T smart00763 51 HDFFGMEEAIERFVNYFKSAAQG-LEERKQILYLLGPVGGGKSSLVECLKRG 101 (361)
T ss_pred hhccCcHHHHHHHHHHHHHHHhc-CCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999775411 2345689999999999999999999874
No 219
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.24 E-value=0.014 Score=63.86 Aligned_cols=57 Identities=19% Similarity=0.187 Sum_probs=40.1
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHhcCccccc----cccceEEEEeCCccCHHHHHHHHHHHc
Q 040015 198 NNVSVVPIVGMGGIGKTTVAQLVYNDSRVDG----RFDLKVWVCVSDQFDVLRVTTTILKSV 255 (1399)
Q Consensus 198 ~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l 255 (1399)
....++.|+|.+|+|||++|.+++....... .-..++|++....++..++ .++++..
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl-~~~~~~~ 77 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERL-VQIAERF 77 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHH-HHHHHHh
Confidence 3468999999999999999999975322222 1367899998887776544 3344443
No 220
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.24 E-value=0.0032 Score=65.26 Aligned_cols=88 Identities=20% Similarity=0.272 Sum_probs=66.7
Q ss_pred CCCcccEEEecCCCCc-----ccCcccCCCCCCcEEeccCCccc----cc-------cccccCCCCCcEEEccCCCCCCC
Q 040015 585 RLKCLRVLSFSACRIT-----ALPDSVGDLKHLRYLDLSRTAIK----QL-------PDSTGNLCNLQSIILLECYSLSK 648 (1399)
Q Consensus 585 ~l~~Lr~L~Ls~~~i~-----~lp~~i~~L~~L~~L~Ls~n~i~----~l-------P~~i~~L~~L~~L~L~~~~~~~~ 648 (1399)
-+..+..+|||+|.|. .+...|.+-.+|+..+++.-... .+ -..+-++++|++.+||.|-.-..
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 3678889999999875 35567778889999998853221 33 34567899999999999966555
Q ss_pred cChh----hccCCCCCEEEccCCccccc
Q 040015 649 LPTD----LGNLTGLRHLRMSGSRLREM 672 (1399)
Q Consensus 649 lP~~----i~~L~~L~~L~l~~~~l~~l 672 (1399)
.|.. |++-+.|.||.+++|.+..+
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~ 135 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGLGPI 135 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCCCcc
Confidence 6554 66789999999999987544
No 221
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.24 E-value=0.016 Score=58.81 Aligned_cols=131 Identities=19% Similarity=0.196 Sum_probs=66.6
Q ss_pred cccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCcc-ccccccceEEEEeCCccCHHHHHHHHH
Q 040015 174 VYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSR-VDGRFDLKVWVCVSDQFDVLRVTTTIL 252 (1399)
Q Consensus 174 ~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~-~~~~f~~~~wv~~~~~~~~~~~~~~i~ 252 (1399)
+||.+..+.++++.+..-. .... -|.|+|..|+||+.+|+.+++... -...| +-|+++.- +.+.+-.++.
T Consensus 1 liG~s~~m~~~~~~~~~~a----~~~~-pVlI~GE~GtGK~~lA~~IH~~s~r~~~pf---i~vnc~~~-~~~~~e~~LF 71 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAA----SSDL-PVLITGETGTGKELLARAIHNNSPRKNGPF---ISVNCAAL-PEELLESELF 71 (168)
T ss_dssp SS--SHHHHHHHHHHHHHT----TSTS--EEEECSTTSSHHHHHHHHHHCSTTTTS-E---EEEETTTS--HHHHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHh----CCCC-CEEEEcCCCCcHHHHHHHHHHhhhcccCCe---EEEehhhh-hcchhhhhhh
Confidence 4788888888888887643 1224 455999999999999999998432 12223 34455432 3333333333
Q ss_pred HHccCCCCCCCcchHHHHHHHHHHhcCcceEEEecCCcCCCcchhhhhhcccCC------CC-----CCcEEEEEcCC
Q 040015 253 KSVTSKPADVDDDLNLLQVCLREKLAGKKFLLVLDDVWSRRNDDWDLICSPLKA------GA-----RGSKIIITTRD 319 (1399)
Q Consensus 253 ~~l~~~~~~~~~~~~~l~~~l~~~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~------~~-----~gs~ilvTtR~ 319 (1399)
..-.+...+......- .+. +-..=-|+||++..-.......+...+.. +. ...|||.||..
T Consensus 72 G~~~~~~~~~~~~~~G---~l~---~A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~ 143 (168)
T PF00158_consen 72 GHEKGAFTGARSDKKG---LLE---QANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSK 143 (168)
T ss_dssp EBCSSSSTTTSSEBEH---HHH---HTTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS
T ss_pred ccccccccccccccCC---cee---eccceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCc
Confidence 3221111111110111 111 12344788888866544444444443321 11 25688888875
No 222
>PRK06921 hypothetical protein; Provisional
Probab=96.23 E-value=0.012 Score=64.74 Aligned_cols=99 Identities=19% Similarity=0.288 Sum_probs=54.2
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCcccccc-ccceEEEEeCCccCHHHHHHHHHHHccCCCCCCCcchHHHHHHHHHHhc
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSRVDGR-FDLKVWVCVSDQFDVLRVTTTILKSVTSKPADVDDDLNLLQVCLREKLA 278 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~ 278 (1399)
...+.++|..|+|||.||.++++.. ... -..++++... +++..+.... +.....+.. +
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l--~~~~g~~v~y~~~~------~l~~~l~~~~-----------~~~~~~~~~-~- 175 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANEL--MRKKGVPVLYFPFV------EGFGDLKDDF-----------DLLEAKLNR-M- 175 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH--hhhcCceEEEEEHH------HHHHHHHHHH-----------HHHHHHHHH-h-
Confidence 4578899999999999999999843 222 3345666542 2333332211 111122222 2
Q ss_pred CcceEEEecCCcC-----CCcchhhh--hhcccCCC-CCCcEEEEEcCC
Q 040015 279 GKKFLLVLDDVWS-----RRNDDWDL--ICSPLKAG-ARGSKIIITTRD 319 (1399)
Q Consensus 279 ~~r~LlvlDdv~~-----~~~~~~~~--l~~~l~~~-~~gs~ilvTtR~ 319 (1399)
.+-=||||||+.. +...+|.. +...+... ..+..+||||..
T Consensus 176 ~~~dlLiIDDl~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~tIitsn~ 224 (266)
T PRK06921 176 KKVEVLFIDDLFKPVNGKPRATEWQIEQMYSVLNYRYLNHKPILISSEL 224 (266)
T ss_pred cCCCEEEEeccccccCCCccCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 2345999999932 22345543 33333211 124457888874
No 223
>PRK09183 transposase/IS protein; Provisional
Probab=96.21 E-value=0.009 Score=65.57 Aligned_cols=100 Identities=15% Similarity=0.197 Sum_probs=51.5
Q ss_pred EEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHHHHccCCCCCCCcchHHHHHHHHHHhcCc
Q 040015 201 SVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTILKSVTSKPADVDDDLNLLQVCLREKLAGK 280 (1399)
Q Consensus 201 ~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~~ 280 (1399)
..+.|+|+.|+|||+||..+.+.... ..+ .+.++.+ .++...+...... ..+...+++.+ .+
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~-~G~-~v~~~~~------~~l~~~l~~a~~~---------~~~~~~~~~~~-~~ 164 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVR-AGI-KVRFTTA------ADLLLQLSTAQRQ---------GRYKTTLQRGV-MA 164 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHH-cCC-eEEEEeH------HHHHHHHHHHHHC---------CcHHHHHHHHh-cC
Confidence 46779999999999999999763221 122 2334432 2333333221111 01112222222 34
Q ss_pred ceEEEecCCcCCCcchhh--hhhcccCCC-CCCcEEEEEcCC
Q 040015 281 KFLLVLDDVWSRRNDDWD--LICSPLKAG-ARGSKIIITTRD 319 (1399)
Q Consensus 281 r~LlvlDdv~~~~~~~~~--~l~~~l~~~-~~gs~ilvTtR~ 319 (1399)
.-++|+||+.....+.+. .+...+... ..++ +||||..
T Consensus 165 ~dlLiiDdlg~~~~~~~~~~~lf~li~~r~~~~s-~iiTsn~ 205 (259)
T PRK09183 165 PRLLIIDEIGYLPFSQEEANLFFQVIAKRYEKGS-MILTSNL 205 (259)
T ss_pred CCEEEEcccccCCCChHHHHHHHHHHHHHHhcCc-EEEecCC
Confidence 459999999754333333 233333211 2344 8888875
No 224
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.11 E-value=0.0058 Score=62.71 Aligned_cols=100 Identities=21% Similarity=0.323 Sum_probs=51.1
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHHHHccCCCCCCCcchHHHHHHHHHHhcC
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTILKSVTSKPADVDDDLNLLQVCLREKLAG 279 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~ 279 (1399)
..-+.++|..|+|||.||..+.+... +..+ .+.|+.+ .+++..+-. .... .. .+.. +. .+.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~-~~g~-~v~f~~~------~~L~~~l~~----~~~~-~~-~~~~---~~-~l~- 107 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAI-RKGY-SVLFITA------SDLLDELKQ----SRSD-GS-YEEL---LK-RLK- 107 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHH-HTT---EEEEEH------HHHHHHHHC----CHCC-TT-HCHH---HH-HHH-
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhc-cCCc-ceeEeec------Cceeccccc----cccc-cc-hhhh---cC-ccc-
Confidence 35689999999999999999987432 2222 3566654 334444322 1111 11 2222 22 222
Q ss_pred cceEEEecCCcCCCcchhhh--hhcccCCC-CCCcEEEEEcCC
Q 040015 280 KKFLLVLDDVWSRRNDDWDL--ICSPLKAG-ARGSKIIITTRD 319 (1399)
Q Consensus 280 ~r~LlvlDdv~~~~~~~~~~--l~~~l~~~-~~gs~ilvTtR~ 319 (1399)
+-=||||||+-.....+|.. +...+... .++ .+||||.-
T Consensus 108 ~~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~-~tIiTSN~ 149 (178)
T PF01695_consen 108 RVDLLILDDLGYEPLSEWEAELLFEIIDERYERK-PTIITSNL 149 (178)
T ss_dssp TSSCEEEETCTSS---HHHHHCTHHHHHHHHHT--EEEEEESS
T ss_pred cccEecccccceeeecccccccchhhhhHhhccc-CeEeeCCC
Confidence 23588899997665555543 22222111 123 57888874
No 225
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.10 E-value=0.15 Score=59.05 Aligned_cols=44 Identities=23% Similarity=0.366 Sum_probs=34.4
Q ss_pred chhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCc
Q 040015 177 RENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDS 224 (1399)
Q Consensus 177 r~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~ 224 (1399)
|+.-.+.|.+.+...+ .....+|+|.|.=|+|||++.+++.+..
T Consensus 1 ~~~~a~~la~~I~~~~----~~~~~~IgL~G~WGsGKSs~l~~l~~~L 44 (325)
T PF07693_consen 1 RKPYAKALAEIIKNPD----SDDPFVIGLYGEWGSGKSSFLNMLKEEL 44 (325)
T ss_pred ChHHHHHHHHHHhccC----CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3455677888887653 2457899999999999999999998743
No 226
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.10 E-value=0.076 Score=58.17 Aligned_cols=188 Identities=18% Similarity=0.151 Sum_probs=99.5
Q ss_pred ccccchhHHHHHHHHHhccCCCC------CCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHH
Q 040015 173 CVYGRENDKNAIVELLMVEDDSS------SSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLR 246 (1399)
Q Consensus 173 ~~vGr~~~~~~l~~~L~~~~~~~------~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 246 (1399)
++=|-++++++|.+...-+=-.+ +=...+=|.++|++|.|||-||++|++. ....| +.|...
T Consensus 152 dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~--T~AtF-----IrvvgS----- 219 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQ--TDATF-----IRVVGS----- 219 (406)
T ss_pred hccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhc--cCceE-----EEeccH-----
Confidence 46688999999988774321000 1123456779999999999999999994 33444 444332
Q ss_pred HHHHHHHHccCCCCCCCcchHHHHHHHHHHhc-CcceEEEecCCcCCC-----------cchh---hhhhcccCCC--CC
Q 040015 247 VTTTILKSVTSKPADVDDDLNLLQVCLREKLA-GKKFLLVLDDVWSRR-----------NDDW---DLICSPLKAG--AR 309 (1399)
Q Consensus 247 ~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~-~~r~LlvlDdv~~~~-----------~~~~---~~l~~~l~~~--~~ 309 (1399)
++.+..-+. -..+.+.+.+..+ ..+..|.+|.++... .+.. -++...+..+ ..
T Consensus 220 ---ElVqKYiGE-------GaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~ 289 (406)
T COG1222 220 ---ELVQKYIGE-------GARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRG 289 (406)
T ss_pred ---HHHHHHhcc-------chHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCC
Confidence 122222111 1223333333333 457888889885311 0111 1233333322 23
Q ss_pred CcEEEEEcCChhhHHhc----C-ccceEeCCCCCccchHH-HHHHhhhcCCCCCCCccHHHHHHHHHHHccCch----hH
Q 040015 310 GSKIIITTRDSSIAASM----G-TVAAHHLECLAFEDCSS-IFMNQAFENRNTGISPDLETIGAEIVNKCEGLL----LA 379 (1399)
Q Consensus 310 gs~ilvTtR~~~v~~~~----~-~~~~~~l~~L~~~~~~~-lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~P----La 379 (1399)
.-|||..|...++.... | -+..++++ ++..++.. +|+-++-. -.....-++ +.+++.|.|.- -|
T Consensus 290 nvKVI~ATNR~D~LDPALLRPGR~DRkIEfp-lPd~~gR~~Il~IHtrk-M~l~~dvd~----e~la~~~~g~sGAdlka 363 (406)
T COG1222 290 NVKVIMATNRPDILDPALLRPGRFDRKIEFP-LPDEEGRAEILKIHTRK-MNLADDVDL----ELLARLTEGFSGADLKA 363 (406)
T ss_pred CeEEEEecCCccccChhhcCCCcccceeecC-CCCHHHHHHHHHHHhhh-ccCccCcCH----HHHHHhcCCCchHHHHH
Confidence 56899888766554321 1 23567776 55555554 55555422 121222333 45666666654 34
Q ss_pred HHHHHHHHh
Q 040015 380 VKRMGIILR 388 (1399)
Q Consensus 380 i~~~~~~l~ 388 (1399)
+.+=|++++
T Consensus 364 ictEAGm~A 372 (406)
T COG1222 364 ICTEAGMFA 372 (406)
T ss_pred HHHHHhHHH
Confidence 445555543
No 227
>PRK04296 thymidine kinase; Provisional
Probab=96.09 E-value=0.0091 Score=62.29 Aligned_cols=114 Identities=12% Similarity=-0.001 Sum_probs=62.2
Q ss_pred EEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHHHHccCCCCCC-CcchHHHHHHHHHHhcC
Q 040015 201 SVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTILKSVTSKPADV-DDDLNLLQVCLREKLAG 279 (1399)
Q Consensus 201 ~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~l~~~l~~~l~~ 279 (1399)
.++.|+|..|.||||+|...+.. ...+-..++.+. ..++.+.....++++++...... ....+++...+.+ ..+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~--~~~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~ 77 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYN--YEERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGE 77 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHH--HHHcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCC
Confidence 57889999999999999998873 323323333331 11222222334555554322210 1123445555544 333
Q ss_pred cceEEEecCCcCCCcchhhhhhcccCCCCCCcEEEEEcCChh
Q 040015 280 KKFLLVLDDVWSRRNDDWDLICSPLKAGARGSKIIITTRDSS 321 (1399)
Q Consensus 280 ~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~ 321 (1399)
+.-+||+|.+..-..++..++...+ ...|..||+|.++.+
T Consensus 78 ~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 78 KIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTD 117 (190)
T ss_pred CCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCcc
Confidence 4458999999443222222333332 245788999999844
No 228
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.05 E-value=0.011 Score=72.55 Aligned_cols=157 Identities=20% Similarity=0.247 Sum_probs=83.1
Q ss_pred CccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCc---cccccc-cceEEEEeCCccCHHHH
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDS---RVDGRF-DLKVWVCVSDQFDVLRV 247 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~---~~~~~f-~~~~wv~~~~~~~~~~~ 247 (1399)
..++||++|++++++.|.... .+-+ .++|.+|||||++|.-++... .|-... +..++. . |+
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~-----KNNP--vLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~s-L----D~--- 234 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRT-----KNNP--VLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYS-L----DL--- 234 (786)
T ss_pred CCCcChHHHHHHHHHHHhccC-----CCCC--eEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEE-e----cH---
Confidence 458999999999999998764 2222 357999999999887776521 111111 112211 0 11
Q ss_pred HHHHHHHccCCCCCCCcchHHHHHHHHHHhcCcceEEEecCCcCC---------CcchhhhhhcccCCCCCCcEEEEEcC
Q 040015 248 TTTILKSVTSKPADVDDDLNLLQVCLREKLAGKKFLLVLDDVWSR---------RNDDWDLICSPLKAGARGSKIIITTR 318 (1399)
Q Consensus 248 ~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~~r~LlvlDdv~~~---------~~~~~~~l~~~l~~~~~gs~ilvTtR 318 (1399)
..-..+.. -..+-.+.+...+.+.-+.++..+++|.+..- ..+.-+-++.++..+. --.|=.||-
T Consensus 235 ----g~LvAGak-yRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGe-L~~IGATT~ 308 (786)
T COG0542 235 ----GSLVAGAK-YRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGE-LRCIGATTL 308 (786)
T ss_pred ----HHHhcccc-ccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCC-eEEEEeccH
Confidence 11111111 11121344444455554556899999998542 0122223333333321 222445554
Q ss_pred ChhhHHhc-------CccceEeCCCCCccchHHHHHHhh
Q 040015 319 DSSIAASM-------GTVAAHHLECLAFEDCSSIFMNQA 350 (1399)
Q Consensus 319 ~~~v~~~~-------~~~~~~~l~~L~~~~~~~lf~~~a 350 (1399)
++ --+.+ ...+.+.++.-+.+++..+++-..
T Consensus 309 ~E-YRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 309 DE-YRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred HH-HHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 32 11111 234677888888888888876543
No 229
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.01 E-value=0.016 Score=62.02 Aligned_cols=49 Identities=16% Similarity=0.224 Sum_probs=37.3
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHH
Q 040015 198 NNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTT 249 (1399)
Q Consensus 198 ~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 249 (1399)
....++.|+|.+|+|||++|.+++.+ ....-..++|++... +++.++.+
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC-CCHHHHHH
Confidence 44689999999999999999998863 223346789999876 66655443
No 230
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.01 E-value=0.017 Score=68.74 Aligned_cols=79 Identities=20% Similarity=0.263 Sum_probs=55.4
Q ss_pred CCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHHHHccCCCCCCCcchHHHHHHHHH
Q 040015 196 SSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTILKSVTSKPADVDDDLNLLQVCLRE 275 (1399)
Q Consensus 196 ~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~ 275 (1399)
..+..+++.++|++|+||||||.-++++. .| .++=|++|+.-+...+-..|...+........
T Consensus 322 ~RP~kKilLL~GppGlGKTTLAHViAkqa----GY-sVvEINASDeRt~~~v~~kI~~avq~~s~l~a------------ 384 (877)
T KOG1969|consen 322 KRPPKKILLLCGPPGLGKTTLAHVIAKQA----GY-SVVEINASDERTAPMVKEKIENAVQNHSVLDA------------ 384 (877)
T ss_pred CCCccceEEeecCCCCChhHHHHHHHHhc----Cc-eEEEecccccccHHHHHHHHHHHHhhcccccc------------
Confidence 44668999999999999999999999743 23 36678888887776666665554433221111
Q ss_pred HhcCcceEEEecCCcCCC
Q 040015 276 KLAGKKFLLVLDDVWSRR 293 (1399)
Q Consensus 276 ~l~~~r~LlvlDdv~~~~ 293 (1399)
.+++..+|+|.++...
T Consensus 385 --dsrP~CLViDEIDGa~ 400 (877)
T KOG1969|consen 385 --DSRPVCLVIDEIDGAP 400 (877)
T ss_pred --CCCcceEEEecccCCc
Confidence 2678889999996543
No 231
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.00 E-value=0.016 Score=73.06 Aligned_cols=119 Identities=18% Similarity=0.272 Sum_probs=68.9
Q ss_pred ccccchhHHHHHHHHHhccCCC--CCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHH
Q 040015 173 CVYGRENDKNAIVELLMVEDDS--SSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTT 250 (1399)
Q Consensus 173 ~~vGr~~~~~~l~~~L~~~~~~--~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 250 (1399)
.++|-++.++.|...+.....+ ........+.++|+.|+|||++|+.++... .. ..+.++++.-.....
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l--~~---~~i~id~se~~~~~~---- 529 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL--GI---ELLRFDMSEYMERHT---- 529 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh--CC---CcEEeechhhccccc----
Confidence 4799999999999998743100 012235678999999999999999998732 22 234445443222111
Q ss_pred HHHHccCCCCCC-C-cchHHHHHHHHHHhc-CcceEEEecCCcCCCcchhhhhhcccC
Q 040015 251 ILKSVTSKPADV-D-DDLNLLQVCLREKLA-GKKFLLVLDDVWSRRNDDWDLICSPLK 305 (1399)
Q Consensus 251 i~~~l~~~~~~~-~-~~~~~l~~~l~~~l~-~~r~LlvlDdv~~~~~~~~~~l~~~l~ 305 (1399)
...+.+..... . +.... +.+.++ ...-+|+||++.....+.++.+...+.
T Consensus 530 -~~~LiG~~~gyvg~~~~g~----L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld 582 (758)
T PRK11034 530 -VSRLIGAPPGYVGFDQGGL----LTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMD 582 (758)
T ss_pred -HHHHcCCCCCcccccccch----HHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHh
Confidence 12222211111 1 10112 223333 334699999998777777777766654
No 232
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.99 E-value=0.23 Score=52.31 Aligned_cols=227 Identities=15% Similarity=0.181 Sum_probs=122.0
Q ss_pred cccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCc----cccccccceEEEEeCCc--------
Q 040015 174 VYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDS----RVDGRFDLKVWVCVSDQ-------- 241 (1399)
Q Consensus 174 ~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~----~~~~~f~~~~wv~~~~~-------- 241 (1399)
+.++++....+...... +..+-+.++|+.|.||-|.+..+.+.. -.+-+-+.+.|.+-+..
T Consensus 15 l~~~~e~~~~Lksl~~~-------~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvs 87 (351)
T KOG2035|consen 15 LIYHEELANLLKSLSST-------GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVS 87 (351)
T ss_pred cccHHHHHHHHHHhccc-------CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEec
Confidence 56777777777766642 247889999999999998877665531 11122344555543332
Q ss_pred --cC-----------HHHHHHHHHHHccCCCCCCCcchHHHHHHHHHHhcCc-ce-EEEecCCcCCCcchhhhhhcccCC
Q 040015 242 --FD-----------VLRVTTTILKSVTSKPADVDDDLNLLQVCLREKLAGK-KF-LLVLDDVWSRRNDDWDLICSPLKA 306 (1399)
Q Consensus 242 --~~-----------~~~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~~-r~-LlvlDdv~~~~~~~~~~l~~~l~~ 306 (1399)
+. -+-+.++++++......- ..+++ .| ++|+-.+++-..++...+.+-+..
T Consensus 88 S~yHlEitPSDaG~~DRvViQellKevAQt~qi--------------e~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEk 153 (351)
T KOG2035|consen 88 SNYHLEITPSDAGNYDRVVIQELLKEVAQTQQI--------------ETQGQRPFKVVVINEADELTRDAQHALRRTMEK 153 (351)
T ss_pred ccceEEeChhhcCcccHHHHHHHHHHHHhhcch--------------hhccccceEEEEEechHhhhHHHHHHHHHHHHH
Confidence 11 122333333333221100 01122 33 466666644333455555555544
Q ss_pred CCCCcEEEEEcCCh-hhHHhc-CccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCchhHHHHHH
Q 040015 307 GARGSKIIITTRDS-SIAASM-GTVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLLLAVKRMG 384 (1399)
Q Consensus 307 ~~~gs~ilvTtR~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~ 384 (1399)
-...+|+|+...+. .+.... +.--.+.+...+++|....+.+.+-..+- .. | .+++.+|+++++|.---+..+-
T Consensus 154 Ys~~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l-~l-p--~~~l~rIa~kS~~nLRrAllml 229 (351)
T KOG2035|consen 154 YSSNCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGL-QL-P--KELLKRIAEKSNRNLRRALLML 229 (351)
T ss_pred HhcCceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcc-cC-c--HHHHHHHHHHhcccHHHHHHHH
Confidence 45667877654331 111111 22245788999999999999887754432 11 2 6789999999998765444443
Q ss_pred HHHhcC----------CChHHHHHHHhhhccCCC--CCcchHHHHHHHhhcCC
Q 040015 385 IILRSR----------EDKGEWYDMLNRNIWDLP--HDESSILQTLGLSYHHL 425 (1399)
Q Consensus 385 ~~l~~~----------~~~~~w~~~l~~~~~~~~--~~~~~i~~~l~~sy~~L 425 (1399)
..++-+ -..-+|+-.+.+...... ...+.+.++-..=|+-|
T Consensus 230 E~~~~~n~~~~a~~~~i~~~dWe~~i~e~a~~i~~eQs~~~L~~vR~~LYeLL 282 (351)
T KOG2035|consen 230 EAVRVNNEPFTANSQVIPKPDWEIYIQEIARVILKEQSPAKLLEVRGRLYELL 282 (351)
T ss_pred HHHHhccccccccCCCCCCccHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 333221 114578887765432221 11234555544455544
No 233
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=95.92 E-value=0.15 Score=58.16 Aligned_cols=179 Identities=11% Similarity=0.071 Sum_probs=99.7
Q ss_pred HHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCc---cccccccc-----eEEEEeCCccCHHHHHHHH
Q 040015 180 DKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDS---RVDGRFDL-----KVWVCVSDQFDVLRVTTTI 251 (1399)
Q Consensus 180 ~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~---~~~~~f~~-----~~wv~~~~~~~~~~~~~~i 251 (1399)
.-+++...+..+. -...+.+.|+.|+||+++|..++... ...+.-.| .-++.....+|+..+
T Consensus 10 ~~~~l~~~~~~~r------l~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i---- 79 (334)
T PRK07993 10 DYEQLVGSYQAGR------GHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTL---- 79 (334)
T ss_pred HHHHHHHHHHcCC------cceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEE----
Confidence 4556666665432 35577899999999999999987521 00000000 001111111111000
Q ss_pred HHHccCCCCCCCcchHHHHHHHHHH----hcCcceEEEecCCcCCCcchhhhhhcccCCCCCCcEEEEEcCC-hhhHHhc
Q 040015 252 LKSVTSKPADVDDDLNLLQVCLREK----LAGKKFLLVLDDVWSRRNDDWDLICSPLKAGARGSKIIITTRD-SSIAASM 326 (1399)
Q Consensus 252 ~~~l~~~~~~~~~~~~~l~~~l~~~----l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~~~~ 326 (1399)
........=.++++.+..+.. ..+++=++|+|+++.-.....+.+...+..-..++.+|++|.+ ..+...+
T Consensus 80 ----~p~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI 155 (334)
T PRK07993 80 ----TPEKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATL 155 (334)
T ss_pred ----ecccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHH
Confidence 000000001134433322221 1356668999999776666777777777666667776666665 4455443
Q ss_pred -CccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCchhHHH
Q 040015 327 -GTVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLLLAVK 381 (1399)
Q Consensus 327 -~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 381 (1399)
+.-..+.+.+++.+++.+.+.... + .+ .+.+..++..++|.|..+.
T Consensus 156 rSRCq~~~~~~~~~~~~~~~L~~~~-~-----~~---~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 156 RSRCRLHYLAPPPEQYALTWLSREV-T-----MS---QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred HhccccccCCCCCHHHHHHHHHHcc-C-----CC---HHHHHHHHHHcCCCHHHHH
Confidence 334678999999999888776532 0 11 2236788999999996544
No 234
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.92 E-value=0.018 Score=59.48 Aligned_cols=36 Identities=33% Similarity=0.603 Sum_probs=28.2
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEE
Q 040015 199 NVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWV 236 (1399)
Q Consensus 199 ~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv 236 (1399)
...+|.+.|+.|+||||+|+.+++ +....+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYE--RLKLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEE
Confidence 356999999999999999999997 444455555555
No 235
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.91 E-value=0.036 Score=64.26 Aligned_cols=142 Identities=13% Similarity=0.164 Sum_probs=82.3
Q ss_pred ccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccc-------------------cccce
Q 040015 173 CVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDG-------------------RFDLK 233 (1399)
Q Consensus 173 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~-------------------~f~~~ 233 (1399)
.++|-+....++..+..... .....+.++|+.|+||||+|..+++...-.. ...-+
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~-----~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 76 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG-----RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDF 76 (325)
T ss_pred CcccchhHHHHHHHHHHhcC-----CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCce
Confidence 46777888888888887542 1233589999999999999999987421000 11233
Q ss_pred EEEEeCCccC---HHHHHHHHHHHccCCCCCCCcchHHHHHHHHHHhcCcceEEEecCCcCCCcchhhhhhcccCCCCCC
Q 040015 234 VWVCVSDQFD---VLRVTTTILKSVTSKPADVDDDLNLLQVCLREKLAGKKFLLVLDDVWSRRNDDWDLICSPLKAGARG 310 (1399)
Q Consensus 234 ~wv~~~~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~g 310 (1399)
..+..++... ..+..+++.+....... .++.-++++|+++.-..+.-..+...+......
T Consensus 77 lel~~s~~~~~~i~~~~vr~~~~~~~~~~~-----------------~~~~kviiidead~mt~~A~nallk~lEep~~~ 139 (325)
T COG0470 77 LELNPSDLRKIDIIVEQVRELAEFLSESPL-----------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKN 139 (325)
T ss_pred EEecccccCCCcchHHHHHHHHHHhccCCC-----------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCC
Confidence 3444443333 12223333322221110 256779999999765555556666666556667
Q ss_pred cEEEEEcCCh-hhHHhc-CccceEeCCC
Q 040015 311 SKIIITTRDS-SIAASM-GTVAAHHLEC 336 (1399)
Q Consensus 311 s~ilvTtR~~-~v~~~~-~~~~~~~l~~ 336 (1399)
+++|++|... .+...+ .....+++.+
T Consensus 140 ~~~il~~n~~~~il~tI~SRc~~i~f~~ 167 (325)
T COG0470 140 TRFILITNDPSKILPTIRSRCQRIRFKP 167 (325)
T ss_pred eEEEEEcCChhhccchhhhcceeeecCC
Confidence 7888888743 333322 2234566666
No 236
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.89 E-value=0.0044 Score=61.26 Aligned_cols=88 Identities=20% Similarity=0.163 Sum_probs=47.1
Q ss_pred EEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHHHHccCCCCCCCcchHHHHHHHHHHhcCcce
Q 040015 203 VPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTILKSVTSKPADVDDDLNLLQVCLREKLAGKKF 282 (1399)
Q Consensus 203 v~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~~r~ 282 (1399)
|.++|.+|+|||+||+.+++. ... ...-+.++...+..++... .........-....+...+ .+..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~--~~~---~~~~i~~~~~~~~~dl~g~----~~~~~~~~~~~~~~l~~a~-----~~~~ 67 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAAL--LGR---PVIRINCSSDTTEEDLIGS----YDPSNGQFEFKDGPLVRAM-----RKGG 67 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHH--HTC---EEEEEE-TTTSTHHHHHCE----EET-TTTTCEEE-CCCTTH-----HEEE
T ss_pred EEEECCCCCCHHHHHHHHHHH--hhc---ceEEEEeccccccccceee----eeecccccccccccccccc-----ccee
Confidence 578999999999999999973 211 2234567777776655432 2211110000000000011 1788
Q ss_pred EEEecCCcCCCcchhhhhhccc
Q 040015 283 LLVLDDVWSRRNDDWDLICSPL 304 (1399)
Q Consensus 283 LlvlDdv~~~~~~~~~~l~~~l 304 (1399)
++|||++.....+.+..+...+
T Consensus 68 il~lDEin~a~~~v~~~L~~ll 89 (139)
T PF07728_consen 68 ILVLDEINRAPPEVLESLLSLL 89 (139)
T ss_dssp EEEESSCGG--HHHHHTTHHHH
T ss_pred EEEECCcccCCHHHHHHHHHHH
Confidence 9999999755444555554444
No 237
>PRK04132 replication factor C small subunit; Provisional
Probab=95.88 E-value=0.093 Score=66.33 Aligned_cols=156 Identities=14% Similarity=0.037 Sum_probs=95.5
Q ss_pred CCCchHHHHHHHHhcCccccccc-cceEEEEeCCccCHHHHHHHHHHHccCCCCCCCcchHHHHHHHHHHhcCcceEEEe
Q 040015 208 MGGIGKTTVAQLVYNDSRVDGRF-DLKVWVCVSDQFDVLRVTTTILKSVTSKPADVDDDLNLLQVCLREKLAGKKFLLVL 286 (1399)
Q Consensus 208 ~gG~GKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~~r~Llvl 286 (1399)
+.++||||+|..++++. ..+.+ ...+-+++++..... ..+++++.+...... -..+.-++|+
T Consensus 574 Ph~lGKTT~A~ala~~l-~g~~~~~~~lElNASd~rgid-~IR~iIk~~a~~~~~---------------~~~~~KVvII 636 (846)
T PRK04132 574 PTVLHNTTAALALAREL-FGENWRHNFLELNASDERGIN-VIREKVKEFARTKPI---------------GGASFKIIFL 636 (846)
T ss_pred CCcccHHHHHHHHHHhh-hcccccCeEEEEeCCCcccHH-HHHHHHHHHHhcCCc---------------CCCCCEEEEE
Confidence 67899999999999842 12222 235566777654443 333333332211000 0124579999
Q ss_pred cCCcCCCcchhhhhhcccCCCCCCcEEEEEcCC-hhhHHhc-CccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHH
Q 040015 287 DDVWSRRNDDWDLICSPLKAGARGSKIIITTRD-SSIAASM-GTVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLET 364 (1399)
Q Consensus 287 Ddv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~ 364 (1399)
|+++.-..++.+.+...+......+++|++|.+ ..+.... +....+.+.+++.++....+...+...+- .-..+
T Consensus 637 DEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi----~i~~e 712 (846)
T PRK04132 637 DEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGL----ELTEE 712 (846)
T ss_pred ECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCC----CCCHH
Confidence 999877666777777777654556676666554 3343332 23468999999999888887766543221 11234
Q ss_pred HHHHHHHHccCchhHHHHHH
Q 040015 365 IGAEIVNKCEGLLLAVKRMG 384 (1399)
Q Consensus 365 ~~~~i~~~~~g~PLai~~~~ 384 (1399)
....|++.++|.+..+..+-
T Consensus 713 ~L~~Ia~~s~GDlR~AIn~L 732 (846)
T PRK04132 713 GLQAILYIAEGDMRRAINIL 732 (846)
T ss_pred HHHHHHHHcCCCHHHHHHHH
Confidence 67899999999986554443
No 238
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.80 E-value=0.0042 Score=38.40 Aligned_cols=19 Identities=42% Similarity=0.714 Sum_probs=9.0
Q ss_pred CcEEeccCCcccccccccc
Q 040015 612 LRYLDLSRTAIKQLPDSTG 630 (1399)
Q Consensus 612 L~~L~Ls~n~i~~lP~~i~ 630 (1399)
|++|+|++|.|+.+|.+|+
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 4444444444444444443
No 239
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=95.79 E-value=0.041 Score=59.74 Aligned_cols=92 Identities=18% Similarity=0.173 Sum_probs=55.2
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHhcCccccc----cccceEEEEeCCccCHHHHHHHHHHHccCCCCC--------CCcc
Q 040015 198 NNVSVVPIVGMGGIGKTTVAQLVYNDSRVDG----RFDLKVWVCVSDQFDVLRVTTTILKSVTSKPAD--------VDDD 265 (1399)
Q Consensus 198 ~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--------~~~~ 265 (1399)
....++.|+|.+|+|||++|.+++......+ .=..++|++....++...+. ++.+........ ...+
T Consensus 17 ~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~ 95 (226)
T cd01393 17 PTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARPYN 95 (226)
T ss_pred cCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeCCC
Confidence 3467999999999999999999976321111 11567899988877765543 333332221100 0112
Q ss_pred hHHHHHHHHHHhc----CcceEEEecCCc
Q 040015 266 LNLLQVCLREKLA----GKKFLLVLDDVW 290 (1399)
Q Consensus 266 ~~~l~~~l~~~l~----~~r~LlvlDdv~ 290 (1399)
.+++...+++... .+.-++|+|.+.
T Consensus 96 ~~~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 96 GEQQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred HHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 4555555555442 344589999974
No 240
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=95.79 E-value=0.055 Score=58.56 Aligned_cols=171 Identities=18% Similarity=0.204 Sum_probs=91.7
Q ss_pred ccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcC-ccccccccceEEEEeCCccCH-HHHHHH
Q 040015 173 CVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYND-SRVDGRFDLKVWVCVSDQFDV-LRVTTT 250 (1399)
Q Consensus 173 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~-~~~~~~f~~~~wv~~~~~~~~-~~~~~~ 250 (1399)
.++|-.++..++..++...- --+...-|.|+|+.|.|||+|...+..+ .++..+| +-|...+.... +-.++.
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~---~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~---l~v~Lng~~~~dk~al~~ 98 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTI---LHGESNSVIIIGPRGSGKTILIDTRLSDIQENGENF---LLVRLNGELQTDKIALKG 98 (408)
T ss_pred ceeehHHHHHHHHHHHHHHH---HhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeE---EEEEECccchhhHHHHHH
Confidence 47899999999998887542 1122446789999999999998877765 2233343 33444433322 223444
Q ss_pred HHHHcc----CCCCCCCcchHHHHHHHHHHhc------CcceEEEecCCcCCCcch-hhhhhcccC----CCCCCcEEEE
Q 040015 251 ILKSVT----SKPADVDDDLNLLQVCLREKLA------GKKFLLVLDDVWSRRNDD-WDLICSPLK----AGARGSKIII 315 (1399)
Q Consensus 251 i~~~l~----~~~~~~~~~~~~l~~~l~~~l~------~~r~LlvlDdv~~~~~~~-~~~l~~~l~----~~~~gs~ilv 315 (1399)
|..++. ........ ..+-...+-+.|+ +-++..|+|.++-..... ..-+...|. ...+-+-|-+
T Consensus 99 I~rql~~e~~~~~k~~gs-fte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~ 177 (408)
T KOG2228|consen 99 ITRQLALELNRIVKSFGS-FTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGV 177 (408)
T ss_pred HHHHHHHHHhhhheeecc-cchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEe
Confidence 444443 22211111 2222223333332 235778888774322111 111222221 1345567788
Q ss_pred EcCChh-------hHHhcCccceEeCCCCCccchHHHHHHhh
Q 040015 316 TTRDSS-------IAASMGTVAAHHLECLAFEDCSSIFMNQA 350 (1399)
Q Consensus 316 TtR~~~-------v~~~~~~~~~~~l~~L~~~~~~~lf~~~a 350 (1399)
|||-.- |-..+.-..++-++.++.++...++++..
T Consensus 178 Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 178 TTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred eccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 999532 22333333455566777788888877765
No 241
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=95.79 E-value=0.033 Score=65.83 Aligned_cols=191 Identities=14% Similarity=0.144 Sum_probs=112.1
Q ss_pred CccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHH
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTI 251 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 251 (1399)
+++||-+.-...|...+.... -..-....|+-|+||||+|+-++.... |.-| .....+..-...++|
T Consensus 16 ~evvGQe~v~~~L~nal~~~r------i~hAYlfsG~RGvGKTt~Ari~AkalN------C~~~-~~~ePC~~C~~Ck~I 82 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGR------IAHAYLFSGPRGVGKTTIARILAKALN------CENG-PTAEPCGKCISCKEI 82 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCc------chhhhhhcCCCCcCchhHHHHHHHHhc------CCCC-CCCCcchhhhhhHhh
Confidence 457999999999999997653 234556789999999999999875211 0001 111222222222333
Q ss_pred HHHccCCC---CC-CCcchHHHHHHHHHHh----cCcceEEEecCCcCCCcchhhhhhcccCCCCCCcEEEEEcCC-hhh
Q 040015 252 LKSVTSKP---AD-VDDDLNLLQVCLREKL----AGKKFLLVLDDVWSRRNDDWDLICSPLKAGARGSKIIITTRD-SSI 322 (1399)
Q Consensus 252 ~~~l~~~~---~~-~~~~~~~l~~~l~~~l----~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v 322 (1399)
...-..+. +. ....+++....+.+.. ++|-=+.|+|.|.--....|+.+..-+..-..+.+.|+.|.+ ..+
T Consensus 83 ~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Ki 162 (515)
T COG2812 83 NEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKI 162 (515)
T ss_pred hcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcC
Confidence 22200000 00 0112333333222222 345558899999776667888888777665566665555554 444
Q ss_pred HHhc-CccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCchhH
Q 040015 323 AASM-GTVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLLLA 379 (1399)
Q Consensus 323 ~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 379 (1399)
...+ +..+.|.++.++.++-...+...+-.... ...++....|++..+|...-
T Consensus 163 p~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I----~~e~~aL~~ia~~a~Gs~RD 216 (515)
T COG2812 163 PNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGI----NIEEDALSLIARAAEGSLRD 216 (515)
T ss_pred chhhhhccccccccCCCHHHHHHHHHHHHHhcCC----ccCHHHHHHHHHHcCCChhh
Confidence 4333 44578999999999888888777643322 22334566777777776643
No 242
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.76 E-value=0.0085 Score=67.72 Aligned_cols=102 Identities=17% Similarity=0.229 Sum_probs=54.9
Q ss_pred EEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHHHHccCCCCCCCcchHHHHHHHHHHhcCc
Q 040015 201 SVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTILKSVTSKPADVDDDLNLLQVCLREKLAGK 280 (1399)
Q Consensus 201 ~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~~ 280 (1399)
.-+.++|..|+|||.||.++++... ..-..++++++.+ ++..+...-.. ...+ ... .+ +.+. .
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~--~~g~~V~y~t~~~------l~~~l~~~~~~---~~~~-~~~---~~-~~l~-~ 246 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELL--DRGKSVIYRTADE------LIEILREIRFN---NDKE-LEE---VY-DLLI-N 246 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHH--HCCCeEEEEEHHH------HHHHHHHHHhc---cchh-HHH---HH-HHhc-c
Confidence 5689999999999999999998532 2223456665432 33333221110 0111 111 12 2222 2
Q ss_pred ceEEEecCCcCCCcchhhh--hhcccCCC-CCCcEEEEEcCC
Q 040015 281 KFLLVLDDVWSRRNDDWDL--ICSPLKAG-ARGSKIIITTRD 319 (1399)
Q Consensus 281 r~LlvlDdv~~~~~~~~~~--l~~~l~~~-~~gs~ilvTtR~ 319 (1399)
-=||||||+..+....|.. +...+... ..+-.+||||..
T Consensus 247 ~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 247 CDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred CCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 2489999996664444532 33332211 224458888874
No 243
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=95.76 E-value=0.023 Score=69.35 Aligned_cols=43 Identities=33% Similarity=0.406 Sum_probs=35.6
Q ss_pred ccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhc
Q 040015 173 CVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 173 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
+++|.+..++.+...+.... ..-|.|+|..|+|||++|+.+++
T Consensus 66 ~iiGqs~~i~~l~~al~~~~-------~~~vLi~Ge~GtGKt~lAr~i~~ 108 (531)
T TIGR02902 66 EIIGQEEGIKALKAALCGPN-------PQHVIIYGPPGVGKTAAARLVLE 108 (531)
T ss_pred HeeCcHHHHHHHHHHHhCCC-------CceEEEECCCCCCHHHHHHHHHH
Confidence 58999999999998875432 34567999999999999999976
No 244
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=95.74 E-value=0.21 Score=56.73 Aligned_cols=93 Identities=13% Similarity=0.173 Sum_probs=63.6
Q ss_pred CcceEEEecCCcCCCcchhhhhhcccCCCCCCcEEEEEcCC-hhhHHhc-CccceEeCCCCCccchHHHHHHhhhcCCCC
Q 040015 279 GKKFLLVLDDVWSRRNDDWDLICSPLKAGARGSKIIITTRD-SSIAASM-GTVAAHHLECLAFEDCSSIFMNQAFENRNT 356 (1399)
Q Consensus 279 ~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 356 (1399)
+++=++|+|+++.-....++.+...+..-..++.+|++|.+ ..+...+ +.-..+.+.+++.++..+.+.... .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~---~-- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG---V-- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC---C--
Confidence 44558889999877777888888888766667766655554 4444433 334789999999999998886642 1
Q ss_pred CCCccHHHHHHHHHHHccCchhHHHHH
Q 040015 357 GISPDLETIGAEIVNKCEGLLLAVKRM 383 (1399)
Q Consensus 357 ~~~~~~~~~~~~i~~~~~g~PLai~~~ 383 (1399)
. + ...++..++|.|..+..+
T Consensus 206 --~-~----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 206 --A-D----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred --C-h----HHHHHHHcCCCHHHHHHH
Confidence 1 1 223577889999765544
No 245
>PHA00729 NTP-binding motif containing protein
Probab=95.72 E-value=0.039 Score=57.86 Aligned_cols=24 Identities=42% Similarity=0.392 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcC
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
...|.|+|.+|+||||||..+.+.
T Consensus 17 f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 17 FVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHH
Confidence 457889999999999999999873
No 246
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=95.70 E-value=0.0068 Score=58.21 Aligned_cols=21 Identities=38% Similarity=0.501 Sum_probs=20.0
Q ss_pred EEEEEcCCCchHHHHHHHHhc
Q 040015 202 VVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 202 vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
||+|.|++|+||||+|+.+++
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 247
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.70 E-value=0.035 Score=57.89 Aligned_cols=88 Identities=15% Similarity=0.133 Sum_probs=50.8
Q ss_pred EEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCc-cCHHHHHHHHHHHccCCCC---CCCcchHHHHHHHHHH
Q 040015 201 SVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQ-FDVLRVTTTILKSVTSKPA---DVDDDLNLLQVCLREK 276 (1399)
Q Consensus 201 ~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~---~~~~~~~~l~~~l~~~ 276 (1399)
+|+.++|+.|+||||.+-+++..... +=..+..++.... ....+-++..++.++.+.. ...+..+.+.+.+++.
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~--~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~ 79 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKL--KGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKF 79 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHH--TT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhh--ccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHH
Confidence 69999999999999988888764332 2334666765432 3445667777777775432 1222233333444443
Q ss_pred hcCcceEEEecCCc
Q 040015 277 LAGKKFLLVLDDVW 290 (1399)
Q Consensus 277 l~~~r~LlvlDdv~ 290 (1399)
-..+.=+|++|=.-
T Consensus 80 ~~~~~D~vlIDT~G 93 (196)
T PF00448_consen 80 RKKGYDLVLIDTAG 93 (196)
T ss_dssp HHTTSSEEEEEE-S
T ss_pred hhcCCCEEEEecCC
Confidence 23333477777653
No 248
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.68 E-value=0.027 Score=61.60 Aligned_cols=57 Identities=21% Similarity=0.235 Sum_probs=41.2
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhcCccccc----cccceEEEEeCCccCHHHHHHHHHHHcc
Q 040015 199 NVSVVPIVGMGGIGKTTVAQLVYNDSRVDG----RFDLKVWVCVSDQFDVLRVTTTILKSVT 256 (1399)
Q Consensus 199 ~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 256 (1399)
...+.=|+|.+|+|||.||.+++-+..... .=..++||+....|.++++. +|+++..
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~ 97 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFG 97 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTT
T ss_pred CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccc
Confidence 356999999999999999988864322221 22468999999999987765 5666653
No 249
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.66 E-value=0.16 Score=65.45 Aligned_cols=180 Identities=16% Similarity=0.131 Sum_probs=93.5
Q ss_pred CccccchhHHHHHHHHHhccCCC------CCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHH
Q 040015 172 SCVYGRENDKNAIVELLMVEDDS------SSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVL 245 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 245 (1399)
.++.|.+..++.|.+.+.-+-.. -+-...+-+.++|++|+|||++|+++++. ....| +.+...
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e--~~~~f-----i~v~~~---- 521 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATE--SGANF-----IAVRGP---- 521 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE-----EEEehH----
Confidence 45788888888877766421100 01122345788999999999999999984 22333 222211
Q ss_pred HHHHHHHHHccCCCCCCCcchHHHHHHHHHHhcCcceEEEecCCcCCC--------cc----hhhhhhcccCC--CCCCc
Q 040015 246 RVTTTILKSVTSKPADVDDDLNLLQVCLREKLAGKKFLLVLDDVWSRR--------ND----DWDLICSPLKA--GARGS 311 (1399)
Q Consensus 246 ~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~~r~LlvlDdv~~~~--------~~----~~~~l~~~l~~--~~~gs 311 (1399)
+++....+ +....+...+...-...+.+|++|+++.-. .. ....+...+.. ...+.
T Consensus 522 ----~l~~~~vG------ese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v 591 (733)
T TIGR01243 522 ----EILSKWVG------ESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNV 591 (733)
T ss_pred ----HHhhcccC------cHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCE
Confidence 11111111 112233333333335667899999984310 00 11122222221 12344
Q ss_pred EEEEEcCChhhHH-hc----CccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCch
Q 040015 312 KIIITTRDSSIAA-SM----GTVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLL 377 (1399)
Q Consensus 312 ~ilvTtR~~~v~~-~~----~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~P 377 (1399)
-||.||..++... .+ .-...+.++..+.++-.++|+.+.-+. ......+ ...+++.+.|.-
T Consensus 592 ~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~-~~~~~~~----l~~la~~t~g~s 657 (733)
T TIGR01243 592 VVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSM-PLAEDVD----LEELAEMTEGYT 657 (733)
T ss_pred EEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCC-CCCccCC----HHHHHHHcCCCC
Confidence 5666776554332 11 123567888888887788887654221 1111122 355677777654
No 250
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.65 E-value=0.031 Score=57.09 Aligned_cols=40 Identities=23% Similarity=0.318 Sum_probs=29.4
Q ss_pred EEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccC
Q 040015 202 VVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFD 243 (1399)
Q Consensus 202 vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 243 (1399)
++.|+|.+|+||||+|..+.... ...-..++|+.......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~--~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI--ATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH--HhcCCEEEEEECCcchH
Confidence 36899999999999999998742 22335577887765543
No 251
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.65 E-value=0.006 Score=63.73 Aligned_cols=87 Identities=20% Similarity=0.288 Sum_probs=59.6
Q ss_pred cCcccCCCCCCcEEeccCCccccccccccCCCCCcEEEccCC--CCCCCcChhhccCCCCCEEEccCCcccccCcc---c
Q 040015 602 LPDSVGDLKHLRYLDLSRTAIKQLPDSTGNLCNLQSIILLEC--YSLSKLPTDLGNLTGLRHLRMSGSRLREMPMK---M 676 (1399)
Q Consensus 602 lp~~i~~L~~L~~L~Ls~n~i~~lP~~i~~L~~L~~L~L~~~--~~~~~lP~~i~~L~~L~~L~l~~~~l~~lp~~---i 676 (1399)
+....-.+..|+.|++.+..++.+ ..+-.|++|++|+++.| .....++.-..++++|++|++++|+++. +.. +
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~-lstl~pl 112 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD-LSTLRPL 112 (260)
T ss_pred cccccccccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc-ccccchh
Confidence 333344556677777777666654 33557899999999999 5566777667788999999999999764 233 3
Q ss_pred cCCCCCCccCceee
Q 040015 677 YKLKNLQTLSHFVV 690 (1399)
Q Consensus 677 ~~L~~L~~L~~~~~ 690 (1399)
..+.+|..|..|.+
T Consensus 113 ~~l~nL~~Ldl~n~ 126 (260)
T KOG2739|consen 113 KELENLKSLDLFNC 126 (260)
T ss_pred hhhcchhhhhcccC
Confidence 44555555555443
No 252
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.59 E-value=0.016 Score=60.90 Aligned_cols=113 Identities=16% Similarity=0.232 Sum_probs=60.1
Q ss_pred EEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHHHHccCCCCCCCcchHHHHHHHHHHhcCc
Q 040015 201 SVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTILKSVTSKPADVDDDLNLLQVCLREKLAGK 280 (1399)
Q Consensus 201 ~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~~ 280 (1399)
++|.|+|+.|.||||++..+... ...+....+++- .++.. ...... ..+-.+. +...+.......++..+...
T Consensus 2 GlilI~GptGSGKTTll~~ll~~--~~~~~~~~i~t~-e~~~E--~~~~~~-~~~i~q~-~vg~~~~~~~~~i~~aLr~~ 74 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDY--INKNKTHHILTI-EDPIE--FVHESK-RSLINQR-EVGLDTLSFENALKAALRQD 74 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH--hhhcCCcEEEEE-cCCcc--ccccCc-cceeeec-ccCCCccCHHHHHHHHhcCC
Confidence 47899999999999999987763 222333344432 22111 000000 0000000 01111233455677777777
Q ss_pred ceEEEecCCcCCCcchhhhhhcccCCCCCCcEEEEEcCChhhHHh
Q 040015 281 KFLLVLDDVWSRRNDDWDLICSPLKAGARGSKIIITTRDSSIAAS 325 (1399)
Q Consensus 281 r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~ 325 (1399)
.=.|++|++.+. +........ ...|..|+.|+....+...
T Consensus 75 pd~ii~gEird~--e~~~~~l~~---a~~G~~v~~t~Ha~~~~~~ 114 (198)
T cd01131 75 PDVILVGEMRDL--ETIRLALTA---AETGHLVMSTLHTNSAAKT 114 (198)
T ss_pred cCEEEEcCCCCH--HHHHHHHHH---HHcCCEEEEEecCCcHHHH
Confidence 779999999543 333332222 2346668888877665543
No 253
>PRK06696 uridine kinase; Validated
Probab=95.56 E-value=0.025 Score=61.00 Aligned_cols=44 Identities=23% Similarity=0.261 Sum_probs=36.0
Q ss_pred cchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcC
Q 040015 176 GRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 176 Gr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
.|++-+++|.+.+.... .....+|+|.|.+|+||||+|+.+...
T Consensus 2 ~~~~~~~~la~~~~~~~----~~~~~iI~I~G~sgsGKSTlA~~L~~~ 45 (223)
T PRK06696 2 SRKQLIKELAEHILTLN----LTRPLRVAIDGITASGKTTFADELAEE 45 (223)
T ss_pred cHHHHHHHHHHHHHHhC----CCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 46777888888887532 245789999999999999999999973
No 254
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.56 E-value=0.048 Score=58.76 Aligned_cols=44 Identities=18% Similarity=0.225 Sum_probs=32.7
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccC
Q 040015 198 NNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFD 243 (1399)
Q Consensus 198 ~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 243 (1399)
....++.|.|.+|+||||+|.+++... ...-..++|++....+.
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~~--~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVET--AGQGKKVAYIDTEGLSS 60 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEECCCCCH
Confidence 346899999999999999999998632 22234577887765554
No 255
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.53 E-value=0.085 Score=54.74 Aligned_cols=157 Identities=18% Similarity=0.173 Sum_probs=84.6
Q ss_pred CccccchhHHH---HHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHH
Q 040015 172 SCVYGRENDKN---AIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVT 248 (1399)
Q Consensus 172 ~~~vGr~~~~~---~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 248 (1399)
+++||.++.+. -|+++|..++.- +++..+-|..+|++|.|||-+|+++++..++ .| +.+-. .++
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~F-g~WAPknVLFyGppGTGKTm~Akalane~kv--p~-----l~vka----t~l- 187 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERF-GDWAPKNVLFYGPPGTGKTMMAKALANEAKV--PL-----LLVKA----TEL- 187 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHh-cccCcceeEEECCCCccHHHHHHHHhcccCC--ce-----EEech----HHH-
Confidence 46899887664 477888765421 4566888999999999999999999995432 22 22211 111
Q ss_pred HHHHHHccCCCCCCCcchHHHHHHHHHHhcCcceEEEecCCcCCCc------------chhhhhhcccCC--CCCCcEEE
Q 040015 249 TTILKSVTSKPADVDDDLNLLQVCLREKLAGKKFLLVLDDVWSRRN------------DDWDLICSPLKA--GARGSKII 314 (1399)
Q Consensus 249 ~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~~r~LlvlDdv~~~~~------------~~~~~l~~~l~~--~~~gs~il 314 (1399)
|-+..+ +...++.+...+.-+.-++++.+|.++-..- +..+.+..-+.. .+.|...|
T Consensus 188 --iGehVG-------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtI 258 (368)
T COG1223 188 --IGEHVG-------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTI 258 (368)
T ss_pred --HHHHhh-------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEE
Confidence 111111 1122222222222245678899998743110 111222222221 23565556
Q ss_pred EEcCChhhHHhc-Cc--cceEeCCCCCccchHHHHHHhh
Q 040015 315 ITTRDSSIAASM-GT--VAAHHLECLAFEDCSSIFMNQA 350 (1399)
Q Consensus 315 vTtR~~~v~~~~-~~--~~~~~l~~L~~~~~~~lf~~~a 350 (1399)
..|......... .. ..-++..--+++|-.+++...+
T Consensus 259 aaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~ 297 (368)
T COG1223 259 AATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYA 297 (368)
T ss_pred eecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHH
Confidence 666655543321 11 1345555556777777777766
No 256
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=95.52 E-value=0.052 Score=58.91 Aligned_cols=88 Identities=17% Similarity=0.290 Sum_probs=52.6
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCccccccc-cceEEEEeCCcc-CHHHHHHHHHHHccCCC-----CCCCc-chH----
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSRVDGRF-DLKVWVCVSDQF-DVLRVTTTILKSVTSKP-----ADVDD-DLN---- 267 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~-----~~~~~-~~~---- 267 (1399)
..-++|+|..|+||||||+++++. ++.+| +.++++-+.+.. .+.++.+++.+.-..+. ...++ ...
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~~--i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~ 146 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELINN--IAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARV 146 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHHH--HHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 456799999999999999999984 44445 445566665543 34455555544211111 01111 011
Q ss_pred -HHHHHHHHHh--c-CcceEEEecCC
Q 040015 268 -LLQVCLREKL--A-GKKFLLVLDDV 289 (1399)
Q Consensus 268 -~l~~~l~~~l--~-~~r~LlvlDdv 289 (1399)
.....+.+++ + ++.+|+++||+
T Consensus 147 ~~~a~~~AEyfr~~~g~~Vl~~~Dsl 172 (274)
T cd01133 147 ALTGLTMAEYFRDEEGQDVLLFIDNI 172 (274)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeCh
Confidence 1223345555 3 88999999998
No 257
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.50 E-value=0.0014 Score=68.15 Aligned_cols=81 Identities=27% Similarity=0.343 Sum_probs=54.5
Q ss_pred ccCCCCcccEEEecCCCCcccCcccCCCCCCcEEeccCCccccccc--cccCCCCCcEEEccCCCCCCCcChh-----hc
Q 040015 582 ILPRLKCLRVLSFSACRITALPDSVGDLKHLRYLDLSRTAIKQLPD--STGNLCNLQSIILLECYSLSKLPTD-----LG 654 (1399)
Q Consensus 582 ~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~Ls~n~i~~lP~--~i~~L~~L~~L~L~~~~~~~~lP~~-----i~ 654 (1399)
++.+|+.|.||.||-|.|+++ ..+..+++|+.|.|+.|.|..+-+ -+.+|++|++|.|..|.-.+.-+.. +.
T Consensus 36 ic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR 114 (388)
T KOG2123|consen 36 ICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLR 114 (388)
T ss_pred HHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHH
Confidence 467788888888888888877 246778888888888888776643 3566777777777776544444332 33
Q ss_pred cCCCCCEEE
Q 040015 655 NLTGLRHLR 663 (1399)
Q Consensus 655 ~L~~L~~L~ 663 (1399)
.|++|+.||
T Consensus 115 ~LPnLkKLD 123 (388)
T KOG2123|consen 115 VLPNLKKLD 123 (388)
T ss_pred Hcccchhcc
Confidence 455555544
No 258
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.49 E-value=0.03 Score=58.72 Aligned_cols=108 Identities=15% Similarity=0.153 Sum_probs=53.3
Q ss_pred EEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHHHHccCCCCCCCcchHHHHHHHHHH-h--
Q 040015 201 SVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTILKSVTSKPADVDDDLNLLQVCLREK-L-- 277 (1399)
Q Consensus 201 ~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~-l-- 277 (1399)
+++.|.|.+|+||||+++.+..... .. ...+.+...... ....+.+..+... .++.......... .
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~--~~-g~~v~~~apT~~----Aa~~L~~~~~~~a----~Ti~~~l~~~~~~~~~~ 87 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALE--AA-GKRVIGLAPTNK----AAKELREKTGIEA----QTIHSFLYRIPNGDDEG 87 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHH--HT-T--EEEEESSHH----HHHHHHHHHTS-E----EEHHHHTTEECCEECCS
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHH--hC-CCeEEEECCcHH----HHHHHHHhhCcch----hhHHHHHhcCCcccccc
Confidence 5888999999999999999876322 22 123333332222 2222333322111 0011100000000 0
Q ss_pred ---cCcceEEEecCCcCCCcchhhhhhcccCCCCCCcEEEEEcCChh
Q 040015 278 ---AGKKFLLVLDDVWSRRNDDWDLICSPLKAGARGSKIIITTRDSS 321 (1399)
Q Consensus 278 ---~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~ 321 (1399)
..++-+||+|+++-.+...+..+...... .|+|+|+.=-..+
T Consensus 88 ~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~~Q 132 (196)
T PF13604_consen 88 RPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDPNQ 132 (196)
T ss_dssp SCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-TTS
T ss_pred cccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCcch
Confidence 23456999999977665667666665544 4778887655443
No 259
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.48 E-value=0.15 Score=62.65 Aligned_cols=184 Identities=14% Similarity=0.142 Sum_probs=101.5
Q ss_pred Cccccchh---HHHHHHHHHhccCCC--CCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHH
Q 040015 172 SCVYGREN---DKNAIVELLMVEDDS--SSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLR 246 (1399)
Q Consensus 172 ~~~vGr~~---~~~~l~~~L~~~~~~--~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 246 (1399)
.++.|-|+ |+++++++|..++.. -+..-.+=+.++|++|+|||-||++++-...| =|++++..
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgV-------PF~svSGS----- 378 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGV-------PFFSVSGS----- 378 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCC-------ceeeechH-----
Confidence 45788775 556667777654310 02234566789999999999999999985432 24555542
Q ss_pred HHHHHHHHccCCCCCCCcchHHHHHHHHHHhcCcceEEEecCCcCCCc---------------chhhhhhcccCCCC--C
Q 040015 247 VTTTILKSVTSKPADVDDDLNLLQVCLREKLAGKKFLLVLDDVWSRRN---------------DDWDLICSPLKAGA--R 309 (1399)
Q Consensus 247 ~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~~r~LlvlDdv~~~~~---------------~~~~~l~~~l~~~~--~ 309 (1399)
+.++.+.+.. ...+.++. ...-...+..|.+|+++.... ..++++..-+.... .
T Consensus 379 ---EFvE~~~g~~---asrvr~lf---~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~ 449 (774)
T KOG0731|consen 379 ---EFVEMFVGVG---ASRVRDLF---PLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSK 449 (774)
T ss_pred ---HHHHHhcccc---hHHHHHHH---HHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCC
Confidence 1222222211 11112221 111134567888888743210 11233333332222 2
Q ss_pred CcEEEEEcCChhhHHhc----C-ccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCchhHH
Q 040015 310 GSKIIITTRDSSIAASM----G-TVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLLLAV 380 (1399)
Q Consensus 310 gs~ilvTtR~~~v~~~~----~-~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 380 (1399)
+.-++-+|+..++.... | -+..+.++.-+...-.++|..++-.-.. ..+..++++ |+...-|.+=|.
T Consensus 450 ~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~---~~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 450 GVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKL---DDEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred cEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCC---CcchhhHHH-HHhcCCCCcHHH
Confidence 33345566666554321 1 2356777777778888899888743322 245566676 999998888553
No 260
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.46 E-value=0.07 Score=68.66 Aligned_cols=182 Identities=14% Similarity=0.145 Sum_probs=92.5
Q ss_pred CccccchhHHHHHHHHHhccCCC------CCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHH
Q 040015 172 SCVYGRENDKNAIVELLMVEDDS------SSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVL 245 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 245 (1399)
.++.|.+..+++|.+++...-.. -+-...+-|.++|++|+|||++|+.+++. ....| +.++..
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~--~~~~~-----i~i~~~---- 246 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANE--AGAYF-----ISINGP---- 246 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHH--hCCeE-----EEEecH----
Confidence 45889999999998887432100 01122456789999999999999999983 22222 222211
Q ss_pred HHHHHHHHHccCCCCCCCcchHHHHHHHHHHhcCcceEEEecCCcCCCc------c-----hhhhhhcccCCC-CCCcEE
Q 040015 246 RVTTTILKSVTSKPADVDDDLNLLQVCLREKLAGKKFLLVLDDVWSRRN------D-----DWDLICSPLKAG-ARGSKI 313 (1399)
Q Consensus 246 ~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~~r~LlvlDdv~~~~~------~-----~~~~l~~~l~~~-~~gs~i 313 (1399)
++ ..... ......+...+.........+|++|++..... . ....+...+... ..+..+
T Consensus 247 ~i----~~~~~------g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vi 316 (733)
T TIGR01243 247 EI----MSKYY------GESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVI 316 (733)
T ss_pred HH----hcccc------cHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEE
Confidence 11 11110 01123333344444456678999999843210 0 112232222211 223334
Q ss_pred EE-EcCChh-hHHhcC----ccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCchhH
Q 040015 314 II-TTRDSS-IAASMG----TVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLLLA 379 (1399)
Q Consensus 314 lv-TtR~~~-v~~~~~----~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 379 (1399)
+| ||.... +...+. -...+.+...+.++-.+++....-. ...... .....+++.+.|.--|
T Consensus 317 vI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~-~~l~~d----~~l~~la~~t~G~~ga 383 (733)
T TIGR01243 317 VIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRN-MPLAED----VDLDKLAEVTHGFVGA 383 (733)
T ss_pred EEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcC-CCCccc----cCHHHHHHhCCCCCHH
Confidence 44 554332 211111 1245777777777777777754321 111111 1246778888886543
No 261
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=95.44 E-value=0.01 Score=58.45 Aligned_cols=108 Identities=19% Similarity=0.184 Sum_probs=61.4
Q ss_pred ccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccc-cccccceEEEEeCCccCHHHHHHHHHH
Q 040015 175 YGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRV-DGRFDLKVWVCVSDQFDVLRVTTTILK 253 (1399)
Q Consensus 175 vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~ 253 (1399)
||+...++++.+.+..-. ....-|.|+|..|+||+++|+.++..... ...|..+ .+... . .++++
T Consensus 1 vG~S~~~~~l~~~l~~~a-----~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~---~~~~~-~-----~~~l~ 66 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLA-----KSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVI---DCASL-P-----AELLE 66 (138)
T ss_dssp --SCHHHHHHHHHHHHHH-----CSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCC---CHHCT-C-----HHHHH
T ss_pred CCCCHHHHHHHHHHHHHh-----CCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEe---chhhC-c-----HHHHH
Confidence 577777777777775532 12345689999999999999999874322 1222111 11110 0 11111
Q ss_pred HccCCCCCCCcchHHHHHHHHHHhcCcceEEEecCCcCCCcchhhhhhcccCCC-CCCcEEEEEcCCh
Q 040015 254 SVTSKPADVDDDLNLLQVCLREKLAGKKFLLVLDDVWSRRNDDWDLICSPLKAG-ARGSKIIITTRDS 320 (1399)
Q Consensus 254 ~l~~~~~~~~~~~~~l~~~l~~~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~-~~gs~ilvTtR~~ 320 (1399)
+ -+.--++++|+..-..+....+...+... ....|+|.||+..
T Consensus 67 ---------------------~---a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 67 ---------------------Q---AKGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp ---------------------H---CTTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred ---------------------H---cCCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 1 14456788998665555566666666432 5677999999853
No 262
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.41 E-value=0.068 Score=66.97 Aligned_cols=122 Identities=16% Similarity=0.211 Sum_probs=74.0
Q ss_pred ccccchhHHHHHHHHHhccCCCCCC-CCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHH
Q 040015 173 CVYGRENDKNAIVELLMVEDDSSSS-NNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTI 251 (1399)
Q Consensus 173 ~~vGr~~~~~~l~~~L~~~~~~~~~-~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 251 (1399)
.++|-++.+..|.+.+.....+..+ .....+.+.|+.|+|||.||++++. .+-+..+..+-++.+. ...
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~--~~Fgse~~~IriDmse------~~e-- 632 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAE--YVFGSEENFIRLDMSE------FQE-- 632 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHH--HHcCCccceEEechhh------hhh--
Confidence 4789999999999998765422112 2577888999999999999999987 2322233334444332 222
Q ss_pred HHHccCCCCCCCcchHHHHHHHHHHhcCcce-EEEecCCcCCCcchhhhhhcccCC
Q 040015 252 LKSVTSKPADVDDDLNLLQVCLREKLAGKKF-LLVLDDVWSRRNDDWDLICSPLKA 306 (1399)
Q Consensus 252 ~~~l~~~~~~~~~~~~~l~~~l~~~l~~~r~-LlvlDdv~~~~~~~~~~l~~~l~~ 306 (1399)
..++.+..+.... .+....+.+.++.++| +|+||||...+.+....+...+..
T Consensus 633 vskligsp~gyvG--~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD~ 686 (898)
T KOG1051|consen 633 VSKLIGSPPGYVG--KEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDR 686 (898)
T ss_pred hhhccCCCccccc--chhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHhc
Confidence 2333222221111 1122356667777776 566799987776666655555543
No 263
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.39 E-value=0.0065 Score=37.57 Aligned_cols=22 Identities=32% Similarity=0.537 Sum_probs=18.8
Q ss_pred cccEEEecCCCCcccCcccCCC
Q 040015 588 CLRVLSFSACRITALPDSVGDL 609 (1399)
Q Consensus 588 ~Lr~L~Ls~~~i~~lp~~i~~L 609 (1399)
+|++|||++|+++.+|++|++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 5899999999999999888764
No 264
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.39 E-value=0.066 Score=60.57 Aligned_cols=90 Identities=14% Similarity=0.169 Sum_probs=49.5
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCcc-CHHHHHHHHHHHccCCCCCCCcchHHHHHHHHHHh
Q 040015 199 NVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQF-DVLRVTTTILKSVTSKPADVDDDLNLLQVCLREKL 277 (1399)
Q Consensus 199 ~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l 277 (1399)
+.++|+++|++|+||||++..++.... .+=..+..+...... ...+-++...+.++.+..... +...+...+...-
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~--~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~-d~~~L~~aL~~lk 316 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFH--GKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVR-DEAAMTRALTYFK 316 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHH--HcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecC-CHHHHHHHHHHHH
Confidence 457999999999999999999986322 221234455543221 122333344444443322222 2555665555443
Q ss_pred cC-cceEEEecCCcC
Q 040015 278 AG-KKFLLVLDDVWS 291 (1399)
Q Consensus 278 ~~-~r~LlvlDdv~~ 291 (1399)
.. +.=+|++|-.-.
T Consensus 317 ~~~~~DvVLIDTaGR 331 (436)
T PRK11889 317 EEARVDYILIDTAGK 331 (436)
T ss_pred hccCCCEEEEeCccc
Confidence 22 234777887644
No 265
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.38 E-value=0.04 Score=53.56 Aligned_cols=102 Identities=15% Similarity=0.334 Sum_probs=46.5
Q ss_pred ccccCccceeccCCCCCCcccccccccccccccCCCCcccEEEecCCCCcccC-cccCCCCCCcEEeccCCccccccc-c
Q 040015 551 FNEAECLRTFLPLDPTGEIGVSYLADRVPRDILPRLKCLRVLSFSACRITALP-DSVGDLKHLRYLDLSRTAIKQLPD-S 628 (1399)
Q Consensus 551 ~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~Ls~n~i~~lP~-~ 628 (1399)
|.++.+|+.+.+.+.- ..++...|..+..|+.+++.++ +..++ ..|.++..|+++.+.+ .+..++. .
T Consensus 8 F~~~~~l~~i~~~~~~---------~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~ 76 (129)
T PF13306_consen 8 FYNCSNLESITFPNTI---------KKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNA 76 (129)
T ss_dssp TTT-TT--EEEETST-----------EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTT
T ss_pred HhCCCCCCEEEECCCe---------eEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccc
Confidence 4455556655544311 3455566666666777776664 55553 4466666677777754 4444443 4
Q ss_pred ccCCCCCcEEEccCCCCCCCcC-hhhccCCCCCEEEccC
Q 040015 629 TGNLCNLQSIILLECYSLSKLP-TDLGNLTGLRHLRMSG 666 (1399)
Q Consensus 629 i~~L~~L~~L~L~~~~~~~~lP-~~i~~L~~L~~L~l~~ 666 (1399)
|..+++|+.+++..+ +..++ ..|.+. +|+.+.+..
T Consensus 77 F~~~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 77 FSNCTNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TTT-TTECEEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred ccccccccccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence 555667776666543 33333 235554 666666554
No 266
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.37 E-value=0.1 Score=53.43 Aligned_cols=123 Identities=19% Similarity=0.213 Sum_probs=64.8
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCc---ccccc---cc--ceEEEEeCCccCHHHHHHHHHHHccCCCC---CC---Ccc
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDS---RVDGR---FD--LKVWVCVSDQFDVLRVTTTILKSVTSKPA---DV---DDD 265 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~---~~~~~---f~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---~~---~~~ 265 (1399)
..+++|+|+.|+|||||.+.+..+. .+... |. .+.|+ .+ .+.++.++.... .. -+.
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LSg 90 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLSG 90 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCCH
Confidence 4689999999999999999986321 11111 11 12332 22 355666654321 11 111
Q ss_pred hHHHHHHHHHHhcCc--ceEEEecCCcCC-CcchhhhhhcccCCC-CCCcEEEEEcCChhhHHhcCccceEeC
Q 040015 266 LNLLQVCLREKLAGK--KFLLVLDDVWSR-RNDDWDLICSPLKAG-ARGSKIIITTRDSSIAASMGTVAAHHL 334 (1399)
Q Consensus 266 ~~~l~~~l~~~l~~~--r~LlvlDdv~~~-~~~~~~~l~~~l~~~-~~gs~ilvTtR~~~v~~~~~~~~~~~l 334 (1399)
-+...-.+...+..+ .-++++|+--.. +....+.+...+... ..|..||++|.+...... .+.++.+
T Consensus 91 Gq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~--~d~i~~l 161 (176)
T cd03238 91 GELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSS--ADWIIDF 161 (176)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh--CCEEEEE
Confidence 122223344455556 678888986332 222233333333221 246679999998876643 3344444
No 267
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.37 E-value=0.039 Score=60.36 Aligned_cols=134 Identities=19% Similarity=0.270 Sum_probs=73.9
Q ss_pred cccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcC-ccccccccceEE----EEeCCccC-----
Q 040015 174 VYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYND-SRVDGRFDLKVW----VCVSDQFD----- 243 (1399)
Q Consensus 174 ~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~-~~~~~~f~~~~w----v~~~~~~~----- 243 (1399)
+-+|..+-.--.++|.+++ +..|.+.|.+|.|||.||.+..=. ...++.|..++- +.+++...
T Consensus 226 i~prn~eQ~~ALdlLld~d-------I~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~ 298 (436)
T COG1875 226 IRPRNAEQRVALDLLLDDD-------IDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGT 298 (436)
T ss_pred cCcccHHHHHHHHHhcCCC-------CCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCc
Confidence 3457778888888888775 899999999999999998776422 233445544432 22333211
Q ss_pred ----HHHHHHHHH---HHccCCCCCCCcchHHHHHHH---------HHHhcCc---ceEEEecCCcCCCcchhhhhhccc
Q 040015 244 ----VLRVTTTIL---KSVTSKPADVDDDLNLLQVCL---------REKLAGK---KFLLVLDDVWSRRNDDWDLICSPL 304 (1399)
Q Consensus 244 ----~~~~~~~i~---~~l~~~~~~~~~~~~~l~~~l---------~~~l~~~---r~LlvlDdv~~~~~~~~~~l~~~l 304 (1399)
+.-.++.|. +.+....... ...+...+ -.+.+|+ +-+||+|.+.+-...+. +..+
T Consensus 299 eEeKm~PWmq~i~DnLE~L~~~~~~~---~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTphei---kTil 372 (436)
T COG1875 299 EEEKMGPWMQAIFDNLEVLFSPNEPG---DRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPHEL---KTIL 372 (436)
T ss_pred hhhhccchHHHHHhHHHHHhcccccc---hHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHHHH---HHHH
Confidence 111122222 2222211111 11222111 1123444 46899999976544344 4444
Q ss_pred CCCCCCcEEEEEcCCh
Q 040015 305 KAGARGSKIIITTRDS 320 (1399)
Q Consensus 305 ~~~~~gs~ilvTtR~~ 320 (1399)
...+.||||+.|---.
T Consensus 373 tR~G~GsKIVl~gd~a 388 (436)
T COG1875 373 TRAGEGSKIVLTGDPA 388 (436)
T ss_pred HhccCCCEEEEcCCHH
Confidence 4567899999886543
No 268
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.36 E-value=0.048 Score=60.86 Aligned_cols=88 Identities=18% Similarity=0.150 Sum_probs=47.9
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCcc-CHHHHHHHHHHHccCCCCCCCcchHHHHHHHHHHh
Q 040015 199 NVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQF-DVLRVTTTILKSVTSKPADVDDDLNLLQVCLREKL 277 (1399)
Q Consensus 199 ~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l 277 (1399)
..++++|+|++|+||||++..++.....+..-..+..|+..... ...+.+....+.++.+.....+ ...+...+...
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~-~~~l~~~l~~~- 270 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARD-PKELRKALDRL- 270 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCC-HHHHHHHHHHc-
Confidence 46799999999999999999988643222111245556554321 1223333444444433322222 44555555443
Q ss_pred cCcceEEEecCC
Q 040015 278 AGKKFLLVLDDV 289 (1399)
Q Consensus 278 ~~~r~LlvlDdv 289 (1399)
.+ .=+|++|..
T Consensus 271 ~~-~d~vliDt~ 281 (282)
T TIGR03499 271 RD-KDLILIDTA 281 (282)
T ss_pred cC-CCEEEEeCC
Confidence 33 357777754
No 269
>PRK13695 putative NTPase; Provisional
Probab=95.35 E-value=0.017 Score=59.60 Aligned_cols=22 Identities=32% Similarity=0.409 Sum_probs=19.6
Q ss_pred EEEEEcCCCchHHHHHHHHhcC
Q 040015 202 VVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 202 vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
.++|+|.+|+|||||++.+++.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999998874
No 270
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.35 E-value=0.095 Score=54.26 Aligned_cols=127 Identities=13% Similarity=0.065 Sum_probs=62.8
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHHHHcc--CCC------------CCCCcc
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTILKSVT--SKP------------ADVDDD 265 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~--~~~------------~~~~~~ 265 (1399)
..+++|+|..|.|||||++.++.-.. .....+++.-. +.......+-..+. .+. ...-..
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~ 101 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDLK---PQQGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSG 101 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCC---CCCCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCH
Confidence 45899999999999999999987421 11223332211 11111011111110 000 000111
Q ss_pred hHHHHHHHHHHhcCcceEEEecCCcCC-CcchhhhhhcccCCCCCCcEEEEEcCChhhHHhcCccceEeC
Q 040015 266 LNLLQVCLREKLAGKKFLLVLDDVWSR-RNDDWDLICSPLKAGARGSKIIITTRDSSIAASMGTVAAHHL 334 (1399)
Q Consensus 266 ~~~l~~~l~~~l~~~r~LlvlDdv~~~-~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~~~~~~~l 334 (1399)
-+...-.+.+.+..++=++++|+.... +....+.+...+.....+..||++|.+...... ...++.+
T Consensus 102 G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~~~~l 169 (178)
T cd03247 102 GERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEH--MDKILFL 169 (178)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 122223355556677788999987442 112223333333222236678899988776653 2344443
No 271
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.35 E-value=0.039 Score=61.65 Aligned_cols=86 Identities=15% Similarity=0.124 Sum_probs=55.6
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHHHHccCCCC----CCCcchHHHHHHH
Q 040015 198 NNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTILKSVTSKPA----DVDDDLNLLQVCL 273 (1399)
Q Consensus 198 ~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----~~~~~~~~l~~~l 273 (1399)
...+++-|+|++|+||||||.+++.. ....-..++||+..+.++.. .+++++.... ...+..++....+
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~--~~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~ 125 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIA 125 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 45689999999999999999998763 22333567899887766653 3444443221 1112245555555
Q ss_pred HHHhc-CcceEEEecCCc
Q 040015 274 REKLA-GKKFLLVLDDVW 290 (1399)
Q Consensus 274 ~~~l~-~~r~LlvlDdv~ 290 (1399)
....+ +..-+||+|.|-
T Consensus 126 ~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 126 ETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHHhhccCCcEEEEcchh
Confidence 55553 456689999973
No 272
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.33 E-value=0.0017 Score=67.40 Aligned_cols=99 Identities=22% Similarity=0.239 Sum_probs=58.9
Q ss_pred cceeEeeccCCCccccccCCCCCcceeeecccCCcccccccccccCCccceeeeccchhhhhhhhhhcccccccccEEEe
Q 040015 1018 SILELELNNCDGKVLHSTGGHRSLTYMRICQISKLDCLVEGYFQHFTALEELQISHLAELMTLSNKIGLRSLLSLQRLEI 1097 (1399)
Q Consensus 1018 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L 1097 (1399)
+.++|+..+|..........++.|++|.|+-|. ++.+.. +..|++|++|+|..|. +.++..-.-+.++|+|+.|.|
T Consensus 20 ~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNk-IssL~p--l~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDISICEKMPLLEVLSLSVNK-ISSLAP--LQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HhhhhcccCCCccHHHHHHhcccceeEEeeccc-cccchh--HHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhHhh
Confidence 344555555555555555566777777776665 333322 5667777777777663 444444445567777777777
Q ss_pred ecCCCcccchh-----hhhCCCCccEEE
Q 040015 1098 SECPYFKELPE-----KFYELSTLKVLR 1120 (1399)
Q Consensus 1098 ~~~~~~~~l~~-----~~~~l~~L~~L~ 1120 (1399)
..|+-...-+. -+.-|++|++||
T Consensus 96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 96 DENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccCCcccccchhHHHHHHHHcccchhcc
Confidence 77765544332 245577777775
No 273
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.31 E-value=0.056 Score=61.74 Aligned_cols=57 Identities=16% Similarity=0.234 Sum_probs=41.6
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhcCcccccc----ccceEEEEeCCccCHHHHHHHHHHHcc
Q 040015 199 NVSVVPIVGMGGIGKTTVAQLVYNDSRVDGR----FDLKVWVCVSDQFDVLRVTTTILKSVT 256 (1399)
Q Consensus 199 ~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~i~~~l~ 256 (1399)
...++-|+|.+|+|||++|.+++........ =..++||+....+++.++. ++++.++
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~-~~~~~~g 161 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIE-QMAEALG 161 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHH-HHHHHcC
Confidence 4679999999999999999999854222111 1478999999988887754 4445544
No 274
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.29 E-value=0.043 Score=61.40 Aligned_cols=85 Identities=18% Similarity=0.136 Sum_probs=55.4
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHHHHccCCCC----CCCcchHHHHHHH
Q 040015 198 NNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTILKSVTSKPA----DVDDDLNLLQVCL 273 (1399)
Q Consensus 198 ~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----~~~~~~~~l~~~l 273 (1399)
+..+++-|+|++|+||||||.+++.. ....-..++||+..+.+++. .+++++...+ ...++.++....+
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~~--~~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~ 125 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIAE--AQKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIA 125 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHH
Confidence 45679999999999999999998763 22334568899988877753 3444443211 1112245555555
Q ss_pred HHHhc-CcceEEEecCC
Q 040015 274 REKLA-GKKFLLVLDDV 289 (1399)
Q Consensus 274 ~~~l~-~~r~LlvlDdv 289 (1399)
....+ +.--+||+|.|
T Consensus 126 ~~li~s~~~~lIVIDSv 142 (325)
T cd00983 126 DSLVRSGAVDLIVVDSV 142 (325)
T ss_pred HHHHhccCCCEEEEcch
Confidence 55553 45668999997
No 275
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.20 E-value=0.15 Score=52.95 Aligned_cols=122 Identities=17% Similarity=0.148 Sum_probs=65.5
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEE---eCCccCHHHHH------HHHHHHccCCCC-----CCCcc
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVC---VSDQFDVLRVT------TTILKSVTSKPA-----DVDDD 265 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~---~~~~~~~~~~~------~~i~~~l~~~~~-----~~~~~ 265 (1399)
..+++|+|..|.|||||++.++... ......+++. +.. .+..... -++++.++.... ..-+.
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~---~~~~G~v~~~g~~~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~ 100 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLL---KPSSGEILLDGKDLAS-LSPKELARKIAYVPQALELLGLAHLADRPFNELSG 100 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEECCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence 4599999999999999999998732 2233444432 211 1221111 113444443211 11111
Q ss_pred hHHHHHHHHHHhcCcceEEEecCCcCC-CcchhhhhhcccCCC-CC-CcEEEEEcCChhhHHh
Q 040015 266 LNLLQVCLREKLAGKKFLLVLDDVWSR-RNDDWDLICSPLKAG-AR-GSKIIITTRDSSIAAS 325 (1399)
Q Consensus 266 ~~~l~~~l~~~l~~~r~LlvlDdv~~~-~~~~~~~l~~~l~~~-~~-gs~ilvTtR~~~v~~~ 325 (1399)
-+...-.+.+.+...+-++++|+--.. +.+..+.+...+... .. |..||++|.+......
T Consensus 101 G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~ 163 (180)
T cd03214 101 GERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAAR 163 (180)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 222233455566677789999986432 223333444444322 12 6678889888766543
No 276
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.15 E-value=0.21 Score=49.70 Aligned_cols=62 Identities=13% Similarity=0.232 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHhcCcceEEEecCCcC-CCc-chhhhhhcccCCCCCCcEEEEEcCChhhHHhcC
Q 040015 266 LNLLQVCLREKLAGKKFLLVLDDVWS-RRN-DDWDLICSPLKAGARGSKIIITTRDSSIAASMG 327 (1399)
Q Consensus 266 ~~~l~~~l~~~l~~~r~LlvlDdv~~-~~~-~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~ 327 (1399)
-++..-.|.+.+-+++-+++-|.=-- -++ -.|+-+.-.-.-+..|+.||++|.+.++...+.
T Consensus 141 GEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 141 GEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred hHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhcc
Confidence 34444567777788888999886311 111 345543322223557999999999998877664
No 277
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.15 E-value=0.016 Score=55.65 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcC
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
.--|+|.|++|+||||+++.+++.
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~ 28 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEK 28 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHH
Confidence 346789999999999999999974
No 278
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.13 E-value=0.19 Score=52.75 Aligned_cols=62 Identities=18% Similarity=0.203 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHhcCcceEEEecCCcC-CCcchhhhhhcccCCC--CCCcEEEEEcCChhhHHhcC
Q 040015 266 LNLLQVCLREKLAGKKFLLVLDDVWS-RRNDDWDLICSPLKAG--ARGSKIIITTRDSSIAASMG 327 (1399)
Q Consensus 266 ~~~l~~~l~~~l~~~r~LlvlDdv~~-~~~~~~~~l~~~l~~~--~~gs~ilvTtR~~~v~~~~~ 327 (1399)
-++-.-.+.+.+-..+-+|+-|+=-. -+.+.-+.+...+... ..|..||+.|.++.+|..+.
T Consensus 146 GqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~d 210 (226)
T COG1136 146 GQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYAD 210 (226)
T ss_pred HHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCC
Confidence 34444567777888888999987311 1222233344444322 34778999999999998654
No 279
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.13 E-value=0.00072 Score=68.15 Aligned_cols=87 Identities=21% Similarity=0.217 Sum_probs=77.4
Q ss_pred cCCCCcccEEEecCCCCcccCcccCCCCCCcEEeccCCccccccccccCCCCCcEEEccCCCCCCCcChhhccCCCCCEE
Q 040015 583 LPRLKCLRVLSFSACRITALPDSVGDLKHLRYLDLSRTAIKQLPDSTGNLCNLQSIILLECYSLSKLPTDLGNLTGLRHL 662 (1399)
Q Consensus 583 ~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~Ls~n~i~~lP~~i~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L 662 (1399)
+..++..++||++.|++..+-..|.-++.|..|+++.|.|..+|..++.+..++.+++..| ..+..|.+++++++++++
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n-~~~~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKN-NHSQQPKSQKKEPHPKKN 116 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhcc-chhhCCccccccCCcchh
Confidence 3556888999999999888888888899999999999999999999999999999998777 888999999999999999
Q ss_pred EccCCccc
Q 040015 663 RMSGSRLR 670 (1399)
Q Consensus 663 ~l~~~~l~ 670 (1399)
++-+|.+.
T Consensus 117 e~k~~~~~ 124 (326)
T KOG0473|consen 117 EQKKTEFF 124 (326)
T ss_pred hhccCcch
Confidence 99888743
No 280
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.12 E-value=0.095 Score=60.04 Aligned_cols=54 Identities=28% Similarity=0.302 Sum_probs=39.8
Q ss_pred Cccccch---hHHHHHHHHHhccCCCC--CCCCcEEEEEEcCCCchHHHHHHHHhcCcc
Q 040015 172 SCVYGRE---NDKNAIVELLMVEDDSS--SSNNVSVVPIVGMGGIGKTTVAQLVYNDSR 225 (1399)
Q Consensus 172 ~~~vGr~---~~~~~l~~~L~~~~~~~--~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~ 225 (1399)
.++-|-| +|+++|+++|.++..-. ++.=.+=|.++|++|.|||-||++|+....
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~ 362 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAG 362 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccC
Confidence 4567776 47788999998764211 223356678999999999999999998544
No 281
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.11 E-value=0.016 Score=68.37 Aligned_cols=49 Identities=20% Similarity=0.303 Sum_probs=40.0
Q ss_pred ccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhc
Q 040015 173 CVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 173 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
+++|.++.+++|++.|...... .+...+++.++|++|+||||||+.+++
T Consensus 77 d~yGlee~ieriv~~l~~Aa~g-l~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQG-LEEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHh-cCCCCceEEEecCCCCCchHHHHHHHH
Confidence 5899999999999999433211 234467999999999999999999997
No 282
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.09 E-value=0.077 Score=57.89 Aligned_cols=89 Identities=20% Similarity=0.133 Sum_probs=56.0
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHHHH-ccCCCCCCCcchH---HHHHHH
Q 040015 198 NNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTILKS-VTSKPADVDDDLN---LLQVCL 273 (1399)
Q Consensus 198 ~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~-l~~~~~~~~~~~~---~l~~~l 273 (1399)
+..+++=|+|+.|.||||+|.+++-.. +..-..++||+..+.++++.+. ++... +..-......+.+ ++...+
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~~a--q~~g~~a~fIDtE~~l~p~r~~-~l~~~~~d~l~v~~~~~~e~q~~i~~~~ 134 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVANA--QKPGGKAAFIDTEHALDPERAK-QLGVDLLDNLLVSQPDTGEQQLEIAEKL 134 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHHHh--hcCCCeEEEEeCCCCCCHHHHH-HHHHhhhcceeEecCCCHHHHHHHHHHH
Confidence 567899999999999999999988633 3333478999999999987654 33333 2111111111122 233333
Q ss_pred HHHhcCcceEEEecCC
Q 040015 274 REKLAGKKFLLVLDDV 289 (1399)
Q Consensus 274 ~~~l~~~r~LlvlDdv 289 (1399)
......+--|+|+|.+
T Consensus 135 ~~~~~~~i~LvVVDSv 150 (279)
T COG0468 135 ARSGAEKIDLLVVDSV 150 (279)
T ss_pred HHhccCCCCEEEEecC
Confidence 3333334568889988
No 283
>PRK09354 recA recombinase A; Provisional
Probab=95.07 E-value=0.054 Score=61.10 Aligned_cols=86 Identities=19% Similarity=0.129 Sum_probs=56.8
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHHHHccCCCC----CCCcchHHHHHHH
Q 040015 198 NNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTILKSVTSKPA----DVDDDLNLLQVCL 273 (1399)
Q Consensus 198 ~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----~~~~~~~~l~~~l 273 (1399)
...+++-|+|++|+||||||.+++.. ....-..++||+..+.+++. .+++++.... ...+..++....+
T Consensus 58 p~G~IteI~G~~GsGKTtLal~~~~~--~~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~ 130 (349)
T PRK09354 58 PRGRIVEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIA 130 (349)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 45789999999999999999998763 22334568899988877753 3444443321 1112245555555
Q ss_pred HHHhc-CcceEEEecCCc
Q 040015 274 REKLA-GKKFLLVLDDVW 290 (1399)
Q Consensus 274 ~~~l~-~~r~LlvlDdv~ 290 (1399)
...++ +.--+||+|.|-
T Consensus 131 ~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 131 DTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHHhhcCCCCEEEEeChh
Confidence 55553 456689999983
No 284
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.07 E-value=0.075 Score=52.66 Aligned_cols=118 Identities=18% Similarity=0.131 Sum_probs=61.5
Q ss_pred EEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCc---cCHHHHHHHHHHHc-----cCCCC-CCCcch-----
Q 040015 201 SVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQ---FDVLRVTTTILKSV-----TSKPA-DVDDDL----- 266 (1399)
Q Consensus 201 ~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~i~~~l-----~~~~~-~~~~~~----- 266 (1399)
..|-|++-.|.||||+|...+-. ..++=..+.+|..-+. .....+++.+ ..+ +.... ...+..
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~r--a~~~g~~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALR--ALGHGYRVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 46788888899999999888752 2222223444433222 2333333332 000 00000 001111
Q ss_pred -HHHHHHHHHHhcC-cceEEEecCCcCC---CcchhhhhhcccCCCCCCcEEEEEcCChh
Q 040015 267 -NLLQVCLREKLAG-KKFLLVLDDVWSR---RNDDWDLICSPLKAGARGSKIIITTRDSS 321 (1399)
Q Consensus 267 -~~l~~~l~~~l~~-~r~LlvlDdv~~~---~~~~~~~l~~~l~~~~~gs~ilvTtR~~~ 321 (1399)
.+..+..++.+.. +-=|+|||++-.. ..-..+.+...+.....+..||+|.|+..
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 1122233444443 4459999997321 22345566666666667788999999853
No 285
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.05 E-value=0.16 Score=50.36 Aligned_cols=106 Identities=17% Similarity=0.178 Sum_probs=57.5
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHHHHccCCCCCCCcchHHHHHHHHHHhcC
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTILKSVTSKPADVDDDLNLLQVCLREKLAG 279 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~ 279 (1399)
..+++|+|..|.|||||++.+..... .....+|+.-.. .+..-. .... -+...-.+.+.+..
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~~~~-------------~i~~~~-~lS~-G~~~rv~laral~~ 87 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELE---PDEGIVTWGSTV-------------KIGYFE-QLSG-GEKMRLALAKLLLE 87 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCC---CCceEEEECCeE-------------EEEEEc-cCCH-HHHHHHHHHHHHhc
Confidence 46899999999999999999987422 223333332100 000000 0111 22222334555666
Q ss_pred cceEEEecCCcCC-CcchhhhhhcccCCCCCCcEEEEEcCChhhHHh
Q 040015 280 KKFLLVLDDVWSR-RNDDWDLICSPLKAGARGSKIIITTRDSSIAAS 325 (1399)
Q Consensus 280 ~r~LlvlDdv~~~-~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~ 325 (1399)
++-++++|+--.. +.+....+...+... +..||++|.+...+..
T Consensus 88 ~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~ 132 (144)
T cd03221 88 NPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQ 132 (144)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHH
Confidence 7778999986432 223333444444322 2468888887666544
No 286
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.05 E-value=0.06 Score=61.05 Aligned_cols=60 Identities=15% Similarity=0.181 Sum_probs=44.0
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHhcCccc----cccccceEEEEeCCccCHHHHHHHHHHHccCC
Q 040015 198 NNVSVVPIVGMGGIGKTTVAQLVYNDSRV----DGRFDLKVWVCVSDQFDVLRVTTTILKSVTSK 258 (1399)
Q Consensus 198 ~~~~vv~I~G~gG~GKTtLa~~v~~~~~~----~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 258 (1399)
....++-|+|.+|+|||+|+.+++-.... .+.-..++||+....|+++++.+ ++++++..
T Consensus 124 ~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d 187 (344)
T PLN03187 124 ETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMD 187 (344)
T ss_pred CCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCC
Confidence 34678899999999999999988642222 12225789999999999887654 66666544
No 287
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.05 E-value=0.048 Score=56.41 Aligned_cols=79 Identities=24% Similarity=0.251 Sum_probs=44.0
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHHHHccCCCC-CCCcchHHHHHHHHHH
Q 040015 198 NNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTILKSVTSKPA-DVDDDLNLLQVCLREK 276 (1399)
Q Consensus 198 ~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-~~~~~~~~l~~~l~~~ 276 (1399)
..+.+|+|.|.+|+||||+|+.++. .++..+ ++-++...-+. ..-.....+......+ ...-+.+-+.+.|...
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~--~~~~~~--~~~I~~D~YYk-~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L 80 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSE--QLGVEK--VVVISLDDYYK-DQSHLPFEERNKINYDHPEAFDLDLLIEHLKDL 80 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHH--HhCcCc--ceEeecccccc-chhhcCHhhcCCcCccChhhhcHHHHHHHHHHH
Confidence 3578999999999999999999998 333331 22222211111 1101111111111111 1122477888888888
Q ss_pred hcCcc
Q 040015 277 LAGKK 281 (1399)
Q Consensus 277 l~~~r 281 (1399)
+++++
T Consensus 81 ~~g~~ 85 (218)
T COG0572 81 KQGKP 85 (218)
T ss_pred HcCCc
Confidence 88887
No 288
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.02 E-value=0.065 Score=61.27 Aligned_cols=89 Identities=19% Similarity=0.163 Sum_probs=50.7
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCC-ccCHHHHHHHHHHHccCCCCCCCcchHHHHHHHHHHhc
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSD-QFDVLRVTTTILKSVTSKPADVDDDLNLLQVCLREKLA 278 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~ 278 (1399)
.+++.++|+.|+||||++.+++.....+.....+..+.... .....+-++...+.++.+...... ..++...+.+ +.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~-~~~l~~~l~~-l~ 214 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKD-GGDLQLALAE-LR 214 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCC-cccHHHHHHH-hc
Confidence 46999999999999999999987321111123455555432 123445555556666554432222 2334444433 34
Q ss_pred CcceEEEecCCcC
Q 040015 279 GKKFLLVLDDVWS 291 (1399)
Q Consensus 279 ~~r~LlvlDdv~~ 291 (1399)
++ =+|++|..-.
T Consensus 215 ~~-DlVLIDTaG~ 226 (374)
T PRK14722 215 NK-HMVLIDTIGM 226 (374)
T ss_pred CC-CEEEEcCCCC
Confidence 44 5666898743
No 289
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.01 E-value=0.23 Score=57.52 Aligned_cols=90 Identities=13% Similarity=0.123 Sum_probs=52.8
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhcCcccc--ccccceEEEEeCCccC--HHHHHHHHHHHccCCCCCCCcchHHHHHHHH
Q 040015 199 NVSVVPIVGMGGIGKTTVAQLVYNDSRVD--GRFDLKVWVCVSDQFD--VLRVTTTILKSVTSKPADVDDDLNLLQVCLR 274 (1399)
Q Consensus 199 ~~~vv~I~G~gG~GKTtLa~~v~~~~~~~--~~f~~~~wv~~~~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~l~~~l~ 274 (1399)
..++|.++|+.|+||||.+..++...... .+=..+..|++. .+. ....++..++.++.+..... ..+.+...+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~D-t~R~aa~eQL~~~a~~lgvpv~~~~-~~~~l~~~L~ 250 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITID-NYRIGAKKQIQTYGDIMGIPVKAIE-SFKDLKEEIT 250 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecc-CccHHHHHHHHHHhhcCCcceEeeC-cHHHHHHHHH
Confidence 35799999999999999999888632211 111234455544 332 22335555665655432222 2455655555
Q ss_pred HHhcCcceEEEecCCcCC
Q 040015 275 EKLAGKKFLLVLDDVWSR 292 (1399)
Q Consensus 275 ~~l~~~r~LlvlDdv~~~ 292 (1399)
+. .+.-+|++|.+...
T Consensus 251 ~~--~~~DlVLIDTaGr~ 266 (388)
T PRK12723 251 QS--KDFDLVLVDTIGKS 266 (388)
T ss_pred Hh--CCCCEEEEcCCCCC
Confidence 43 44568889988543
No 290
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.99 E-value=0.1 Score=56.87 Aligned_cols=88 Identities=15% Similarity=0.103 Sum_probs=54.6
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHHHHccCCCC-----------------
Q 040015 198 NNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTILKSVTSKPA----------------- 260 (1399)
Q Consensus 198 ~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----------------- 260 (1399)
....++.|+|.+|+|||++|.++.... .+ +=..++|++..+. +.++.+.+ ++++....
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~-~~-~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~ 97 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGA-LK-QGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEG 97 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHH-Hh-CCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEeccccc
Confidence 346799999999999999999996531 11 2246788888654 34555543 33332111
Q ss_pred --CCCcchHHHHHHHHHHhcC-cceEEEecCCc
Q 040015 261 --DVDDDLNLLQVCLREKLAG-KKFLLVLDDVW 290 (1399)
Q Consensus 261 --~~~~~~~~l~~~l~~~l~~-~r~LlvlDdv~ 290 (1399)
......+.+...+.+.+.. +.-++|+|.+-
T Consensus 98 ~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 98 FEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred cccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0112235566666666653 55689999974
No 291
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=94.99 E-value=0.17 Score=53.97 Aligned_cols=124 Identities=18% Similarity=0.215 Sum_probs=68.3
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCcc-----cc------ccc---cceEEEEeCCccC------H---------------
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSR-----VD------GRF---DLKVWVCVSDQFD------V--------------- 244 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~-----~~------~~f---~~~~wv~~~~~~~------~--------------- 244 (1399)
..+++|+|+.|.|||||.+.+..-.+ +. ..+ ..+.||.-...++ +
T Consensus 30 G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~ 109 (254)
T COG1121 30 GEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWF 109 (254)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCccccccc
Confidence 36999999999999999999986211 00 001 2355553211111 1
Q ss_pred -------HHHHHHHHHHccCCCC-----CCCcchHHHHHHHHHHhcCcceEEEecCCcC----CCcchhhhhhcccCCCC
Q 040015 245 -------LRVTTTILKSVTSKPA-----DVDDDLNLLQVCLREKLAGKKFLLVLDDVWS----RRNDDWDLICSPLKAGA 308 (1399)
Q Consensus 245 -------~~~~~~i~~~l~~~~~-----~~~~~~~~l~~~l~~~l~~~r~LlvlDdv~~----~~~~~~~~l~~~l~~~~ 308 (1399)
++...+.+++++...- ..-+.-+.-.-.+.+.|..+.=|+|||.--. ......-++...+...
T Consensus 110 ~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e- 188 (254)
T COG1121 110 RRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE- 188 (254)
T ss_pred ccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC-
Confidence 2344455555543321 1111122233346777888999999997422 1112233334444333
Q ss_pred CCcEEEEEcCChhhHHh
Q 040015 309 RGSKIIITTRDSSIAAS 325 (1399)
Q Consensus 309 ~gs~ilvTtR~~~v~~~ 325 (1399)
|..||++|-+-.....
T Consensus 189 -g~tIl~vtHDL~~v~~ 204 (254)
T COG1121 189 -GKTVLMVTHDLGLVMA 204 (254)
T ss_pred -CCEEEEEeCCcHHhHh
Confidence 8889999998655443
No 292
>CHL00195 ycf46 Ycf46; Provisional
Probab=94.96 E-value=0.39 Score=57.59 Aligned_cols=181 Identities=14% Similarity=0.115 Sum_probs=89.9
Q ss_pred CccccchhHHHHHHHHHhc---cCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHH
Q 040015 172 SCVYGRENDKNAIVELLMV---EDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVT 248 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~---~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 248 (1399)
.++.|.+..++.+...... ....-+-...+-|.++|++|+|||.+|+.+++. ....| +-+..+.
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e--~~~~~---~~l~~~~-------- 294 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIAND--WQLPL---LRLDVGK-------- 294 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEEhHH--------
Confidence 3577877666665543211 000001123456789999999999999999984 22222 1122211
Q ss_pred HHHHHHccCCCCCCCcchHHHHHHHHHHhcCcceEEEecCCcCCCc-------c-hh----hhhhcccCCCCCCcEEEEE
Q 040015 249 TTILKSVTSKPADVDDDLNLLQVCLREKLAGKKFLLVLDDVWSRRN-------D-DW----DLICSPLKAGARGSKIIIT 316 (1399)
Q Consensus 249 ~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~~r~LlvlDdv~~~~~-------~-~~----~~l~~~l~~~~~gs~ilvT 316 (1399)
+..... ......+...+...-...+++|++|+++.--. . .- ..+...+.....+.-||.|
T Consensus 295 --l~~~~v------Gese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaT 366 (489)
T CHL00195 295 --LFGGIV------GESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVAT 366 (489)
T ss_pred --hccccc------ChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 111110 01122333333333345789999999853100 0 01 1122222222334456667
Q ss_pred cCChhh-HHhc----CccceEeCCCCCccchHHHHHHhhhcCCCCC-CCccHHHHHHHHHHHccCch
Q 040015 317 TRDSSI-AASM----GTVAAHHLECLAFEDCSSIFMNQAFENRNTG-ISPDLETIGAEIVNKCEGLL 377 (1399)
Q Consensus 317 tR~~~v-~~~~----~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~-~~~~~~~~~~~i~~~~~g~P 377 (1399)
|....- -..+ .-+..+.++.-+.++-.++|..+........ ...+ ...+++.+.|.-
T Consensus 367 TN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~d----l~~La~~T~GfS 429 (489)
T CHL00195 367 ANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYD----IKKLSKLSNKFS 429 (489)
T ss_pred cCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccC----HHHHHhhcCCCC
Confidence 765432 2121 1235677887788888888877764322111 1112 356666666654
No 293
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.95 E-value=0.12 Score=53.02 Aligned_cols=119 Identities=21% Similarity=0.232 Sum_probs=59.9
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCc--cCHHHHHHHHHHHcc--CCCCCC---------Ccch
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQ--FDVLRVTTTILKSVT--SKPADV---------DDDL 266 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~--~~~~~~---------~~~~ 266 (1399)
..+++|+|..|.|||||.+.++.-. ......+++.-... ...... ...+. .+.... -+.-
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~---~~~~G~i~~~g~~~~~~~~~~~----~~~i~~~~~~~~~~~~t~~e~lLS~G 100 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLY---DPTSGEILIDGVDLRDLDLESL----RKNIAYVPQDPFLFSGTIRENILSGG 100 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC---CCCCCEEEECCEEhhhcCHHHH----HhhEEEEcCCchhccchHHHHhhCHH
Confidence 4589999999999999999998732 12233333321110 011111 11111 000000 0001
Q ss_pred HHHHHHHHHHhcCcceEEEecCCcCC-CcchhhhhhcccCCCCCCcEEEEEcCChhhHHh
Q 040015 267 NLLQVCLREKLAGKKFLLVLDDVWSR-RNDDWDLICSPLKAGARGSKIIITTRDSSIAAS 325 (1399)
Q Consensus 267 ~~l~~~l~~~l~~~r~LlvlDdv~~~-~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~ 325 (1399)
+...-.+...+..++-++++|+-... +......+...+.....+..||++|.+......
T Consensus 101 ~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 160 (171)
T cd03228 101 QRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD 160 (171)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh
Confidence 11222345556667789999986432 112233333333222235678888888776654
No 294
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=94.94 E-value=0.11 Score=58.96 Aligned_cols=71 Identities=7% Similarity=0.102 Sum_probs=44.4
Q ss_pred CcceEEEecCCcCCCcchhhhhhcccCCCCCCcEEEEEcCChh-hHHhc-CccceEeCCCCCccchHHHHHHh
Q 040015 279 GKKFLLVLDDVWSRRNDDWDLICSPLKAGARGSKIIITTRDSS-IAASM-GTVAAHHLECLAFEDCSSIFMNQ 349 (1399)
Q Consensus 279 ~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~~~~-~~~~~~~l~~L~~~~~~~lf~~~ 349 (1399)
+++=++|+|++..-+....+.+...+.....+..+|++|.+.. +...+ +.-..+.+.+++.+++.+.+...
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 3344556688866555555555555544444566777776643 44332 23367899999999988877653
No 295
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=94.93 E-value=0.16 Score=62.86 Aligned_cols=134 Identities=15% Similarity=0.107 Sum_probs=73.4
Q ss_pred CCCccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCcc-ccccccceEEEEeCCccCHHHHH
Q 040015 170 DESCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSR-VDGRFDLKVWVCVSDQFDVLRVT 248 (1399)
Q Consensus 170 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~-~~~~f~~~~wv~~~~~~~~~~~~ 248 (1399)
....++|....++++.+.+..-. ....-|.|+|..|+|||++|+.+++... -.+. .+.|++..... ..+
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a-----~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~p---fv~i~c~~~~~--~~~ 263 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVA-----RSNSTVLLRGESGTGKELIAKAIHYLSPRAKRP---FVKVNCAALSE--TLL 263 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHh-----CcCCCEEEECCCCccHHHHHHHHHHhCCCCCCC---eEEeecCCCCH--HHH
Confidence 34578999999999988886543 1233567999999999999999997432 1222 34455554322 222
Q ss_pred HHHHHHccCCCCCC-CcchHHHHHHHHHHhcCcceEEEecCCcCCCcchhhhhhcccCCCC-----------CCcEEEEE
Q 040015 249 TTILKSVTSKPADV-DDDLNLLQVCLREKLAGKKFLLVLDDVWSRRNDDWDLICSPLKAGA-----------RGSKIIIT 316 (1399)
Q Consensus 249 ~~i~~~l~~~~~~~-~~~~~~l~~~l~~~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvT 316 (1399)
.. .+.+..... .......... ......-.|+||+|..-....+..+...+..+. ...|||.|
T Consensus 264 ~~---~lfg~~~~~~~~~~~~~~g~---~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~ 337 (534)
T TIGR01817 264 ES---ELFGHEKGAFTGAIAQRKGR---FELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAA 337 (534)
T ss_pred HH---HHcCCCCCccCCCCcCCCCc---ccccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEe
Confidence 22 121111000 0000000000 001234568999997665556666666554321 12578888
Q ss_pred cCC
Q 040015 317 TRD 319 (1399)
Q Consensus 317 tR~ 319 (1399)
|..
T Consensus 338 s~~ 340 (534)
T TIGR01817 338 TNR 340 (534)
T ss_pred CCC
Confidence 754
No 296
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.92 E-value=0.11 Score=55.50 Aligned_cols=144 Identities=17% Similarity=0.141 Sum_probs=80.4
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCC-----ccCHHHHHHHHHHHccCCCC------CCCcchHH
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSD-----QFDVLRVTTTILKSVTSKPA------DVDDDLNL 268 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~-----~~~~~~~~~~i~~~l~~~~~------~~~~~~~~ 268 (1399)
..+++|||..|.||||+++.+..= ...-.+.+++.-.+ .....+-..++++.++.... ..-+.-+.
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~L---~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr 115 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILGL---EEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQR 115 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHcC---cCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence 469999999999999999999972 22223333333211 22233456667777664431 11111222
Q ss_pred HHHHHHHHhcCcceEEEecCCcCC-CcchhhhhhcccC--CCCCCcEEEEEcCChhhHHhcCcc-ceEeCCCC-CccchH
Q 040015 269 LQVCLREKLAGKKFLLVLDDVWSR-RNDDWDLICSPLK--AGARGSKIIITTRDSSIAASMGTV-AAHHLECL-AFEDCS 343 (1399)
Q Consensus 269 l~~~l~~~l~~~r~LlvlDdv~~~-~~~~~~~l~~~l~--~~~~gs~ilvTtR~~~v~~~~~~~-~~~~l~~L-~~~~~~ 343 (1399)
-.-.+.+.+.-+.-+||.|..-.. +...-..+...+. ....|-..++.|-+-.|++.++.. .++.++.. .....-
T Consensus 116 QRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~ 195 (268)
T COG4608 116 QRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTE 195 (268)
T ss_pred hhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHH
Confidence 223466777888999999986332 1111122222222 123467789999998888877542 33344433 223344
Q ss_pred HHH
Q 040015 344 SIF 346 (1399)
Q Consensus 344 ~lf 346 (1399)
++|
T Consensus 196 ~~~ 198 (268)
T COG4608 196 EVF 198 (268)
T ss_pred HHh
Confidence 444
No 297
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=94.88 E-value=0.12 Score=58.88 Aligned_cols=60 Identities=17% Similarity=0.201 Sum_probs=43.5
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHhcCcccc----ccccceEEEEeCCccCHHHHHHHHHHHccCC
Q 040015 198 NNVSVVPIVGMGGIGKTTVAQLVYNDSRVD----GRFDLKVWVCVSDQFDVLRVTTTILKSVTSK 258 (1399)
Q Consensus 198 ~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 258 (1399)
....++-|+|.+|+|||++|..++-..... +.-..++||+....|.++++ .++++.++..
T Consensus 121 ~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~~ 184 (342)
T PLN03186 121 ETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGLN 184 (342)
T ss_pred cCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCCC
Confidence 346788999999999999999887432211 11236899999999998776 4567766543
No 298
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=94.87 E-value=0.07 Score=61.00 Aligned_cols=133 Identities=12% Similarity=0.017 Sum_probs=71.1
Q ss_pred ccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHH
Q 040015 173 CVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTIL 252 (1399)
Q Consensus 173 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 252 (1399)
.++|+...++++.+.+..-. ....-|.|+|..|+||+++|+.++...... -..-+.|++.... ...+-..+.
T Consensus 7 ~liG~S~~~~~~~~~i~~~a-----~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~--~~pfv~v~c~~~~-~~~~~~~lf 78 (326)
T PRK11608 7 NLLGEANSFLEVLEQVSRLA-----PLDKPVLIIGERGTGKELIASRLHYLSSRW--QGPFISLNCAALN-ENLLDSELF 78 (326)
T ss_pred ccEECCHHHHHHHHHHHHHh-----CCCCCEEEECCCCCcHHHHHHHHHHhCCcc--CCCeEEEeCCCCC-HHHHHHHHc
Confidence 58999999999888886543 123356799999999999999998632111 1123445555432 222222222
Q ss_pred HHccCCCCCCCcchHHHHHHHHHHhcCcceEEEecCCcCCCcchhhhhhcccCCCC-----------CCcEEEEEcCC
Q 040015 253 KSVTSKPADVDDDLNLLQVCLREKLAGKKFLLVLDDVWSRRNDDWDLICSPLKAGA-----------RGSKIIITTRD 319 (1399)
Q Consensus 253 ~~l~~~~~~~~~~~~~l~~~l~~~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtR~ 319 (1399)
..-.+...... ......+. ....-.|+||+|..-....+..+...+..+. ...|||+||..
T Consensus 79 g~~~~~~~g~~---~~~~g~l~---~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~ 150 (326)
T PRK11608 79 GHEAGAFTGAQ---KRHPGRFE---RADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNA 150 (326)
T ss_pred cccccccCCcc---cccCCchh---ccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCch
Confidence 11100000000 00001111 1223468899997655555666665553321 13588888764
No 299
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.86 E-value=0.33 Score=49.67 Aligned_cols=125 Identities=19% Similarity=0.175 Sum_probs=72.1
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeC-------------------CccC-----------------
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVS-------------------DQFD----------------- 243 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~-------------------~~~~----------------- 243 (1399)
..|++|+|+.|.|||||.+.+..=+. .=...+||.-. +.|+
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN~LE~---~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~ 104 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLNGLEE---PDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVK 104 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCcC---CCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHH
Confidence 46999999999999999999975222 22334444321 1111
Q ss_pred --------HHHHHHHHHHHccCCCC-----CCCcchHHHHHHHHHHhcCcceEEEecCCcCC-CcchhhhhhcccCC-CC
Q 040015 244 --------VLRVTTTILKSVTSKPA-----DVDDDLNLLQVCLREKLAGKKFLLVLDDVWSR-RNDDWDLICSPLKA-GA 308 (1399)
Q Consensus 244 --------~~~~~~~i~~~l~~~~~-----~~~~~~~~l~~~l~~~l~~~r~LlvlDdv~~~-~~~~~~~l~~~l~~-~~ 308 (1399)
.++...++++.++.... ..-+.-++-.-.|.+.|.-++=++.+|..-+. +++.-.++...+.. ..
T Consensus 105 v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~ 184 (240)
T COG1126 105 VKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAE 184 (240)
T ss_pred HcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHH
Confidence 12334444454443321 11122344445678888888889999997442 22233333333322 23
Q ss_pred CCcEEEEEcCChhhHHhcC
Q 040015 309 RGSKIIITTRDSSIAASMG 327 (1399)
Q Consensus 309 ~gs~ilvTtR~~~v~~~~~ 327 (1399)
.|-.+|+.|..-..|+.+.
T Consensus 185 eGmTMivVTHEM~FAr~Va 203 (240)
T COG1126 185 EGMTMIIVTHEMGFAREVA 203 (240)
T ss_pred cCCeEEEEechhHHHHHhh
Confidence 5777888888877777664
No 300
>PRK07667 uridine kinase; Provisional
Probab=94.83 E-value=0.045 Score=57.35 Aligned_cols=38 Identities=21% Similarity=0.352 Sum_probs=30.5
Q ss_pred HHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcC
Q 040015 181 KNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 181 ~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
.+.|.+.+.... +...+|+|.|.+|+||||+|+.+...
T Consensus 3 ~~~~~~~~~~~~-----~~~~iIgI~G~~gsGKStla~~L~~~ 40 (193)
T PRK07667 3 TNELINIMKKHK-----ENRFILGIDGLSRSGKTTFVANLKEN 40 (193)
T ss_pred HHHHHHHHHhcC-----CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 466777776554 34589999999999999999999873
No 301
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=94.81 E-value=0.2 Score=51.01 Aligned_cols=117 Identities=15% Similarity=0.138 Sum_probs=59.5
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCccc-ccc--cc---ceEEEEeCCcc--CHHHHHHHHHHHccCCCCCCCcchHHHHH
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSRV-DGR--FD---LKVWVCVSDQF--DVLRVTTTILKSVTSKPADVDDDLNLLQV 271 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~~-~~~--f~---~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~l~~ 271 (1399)
..+++|+|..|.|||||++.+..-... .+. ++ .+.++ .+.. ....+...+.-. ....... -+...-
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~--~q~~~~~~~tv~~nl~~~---~~~~LS~-G~~~rv 100 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFL--PQRPYLPLGTLREQLIYP---WDDVLSG-GEQQRL 100 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEE--CCCCccccccHHHHhhcc---CCCCCCH-HHHHHH
Confidence 458999999999999999999874221 111 11 12222 2221 111222222110 1111222 233333
Q ss_pred HHHHHhcCcceEEEecCCcCC-CcchhhhhhcccCCCCCCcEEEEEcCChhhHH
Q 040015 272 CLREKLAGKKFLLVLDDVWSR-RNDDWDLICSPLKAGARGSKIIITTRDSSIAA 324 (1399)
Q Consensus 272 ~l~~~l~~~r~LlvlDdv~~~-~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~ 324 (1399)
.+.+.+..++=++++|+--.. +......+...+... +..||++|.+.....
T Consensus 101 ~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~ 152 (166)
T cd03223 101 AFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK 152 (166)
T ss_pred HHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh
Confidence 455556667778889986332 122233333333322 356888888776654
No 302
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=94.81 E-value=0.1 Score=58.85 Aligned_cols=60 Identities=15% Similarity=0.231 Sum_probs=43.5
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHhcCcccc----ccccceEEEEeCCccCHHHHHHHHHHHccCC
Q 040015 198 NNVSVVPIVGMGGIGKTTVAQLVYNDSRVD----GRFDLKVWVCVSDQFDVLRVTTTILKSVTSK 258 (1399)
Q Consensus 198 ~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 258 (1399)
....++-|+|.+|+|||+++.+++-..... +.=..++||+....|+++++. +++++++..
T Consensus 94 ~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~d 157 (313)
T TIGR02238 94 ESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGVD 157 (313)
T ss_pred cCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCCC
Confidence 346799999999999999998876422221 112468999999999888765 456666543
No 303
>PRK13531 regulatory ATPase RavA; Provisional
Probab=94.77 E-value=0.031 Score=65.22 Aligned_cols=42 Identities=19% Similarity=0.241 Sum_probs=37.0
Q ss_pred ccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcC
Q 040015 173 CVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 173 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
.++||++.++.+...+..+. -|.|.|++|+|||++|+.+...
T Consensus 21 ~i~gre~vI~lll~aalag~---------hVLL~GpPGTGKT~LAraLa~~ 62 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSGE---------SVFLLGPPGIAKSLIARRLKFA 62 (498)
T ss_pred hccCcHHHHHHHHHHHccCC---------CEEEECCCChhHHHHHHHHHHH
Confidence 48999999999999987654 5789999999999999999973
No 304
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.76 E-value=0.16 Score=51.89 Aligned_cols=105 Identities=14% Similarity=0.124 Sum_probs=57.2
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEE------eCCccCHHHHHHHHHHHccCCCCCCCcchHHHHHHH
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVC------VSDQFDVLRVTTTILKSVTSKPADVDDDLNLLQVCL 273 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~------~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~l 273 (1399)
..+++|+|..|+|||||++.+..-.. .....+++. +.+... ... -+...-.+
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~q~~~------------------LSg-Gq~qrv~l 82 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQLI---PNGDNDEWDGITPVYKPQYID------------------LSG-GELQRVAI 82 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCC---CCCcEEEECCEEEEEEcccCC------------------CCH-HHHHHHHH
Confidence 45999999999999999999986322 122223221 111111 111 22233345
Q ss_pred HHHhcCcceEEEecCCcCC-CcchhhhhhcccCCC-CC-CcEEEEEcCChhhHHhc
Q 040015 274 REKLAGKKFLLVLDDVWSR-RNDDWDLICSPLKAG-AR-GSKIIITTRDSSIAASM 326 (1399)
Q Consensus 274 ~~~l~~~r~LlvlDdv~~~-~~~~~~~l~~~l~~~-~~-gs~ilvTtR~~~v~~~~ 326 (1399)
...+..++-++++|+--.. +....+.+...+... .. +..||++|.+......+
T Consensus 83 aral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~ 138 (177)
T cd03222 83 AAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYL 138 (177)
T ss_pred HHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHh
Confidence 5566667789999986332 112223333333221 12 35688888877665543
No 305
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=94.76 E-value=0.084 Score=59.70 Aligned_cols=59 Identities=17% Similarity=0.166 Sum_probs=41.6
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHhcCcccc----ccccceEEEEeCCccCHHHHHHHHHHHccC
Q 040015 198 NNVSVVPIVGMGGIGKTTVAQLVYNDSRVD----GRFDLKVWVCVSDQFDVLRVTTTILKSVTS 257 (1399)
Q Consensus 198 ~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 257 (1399)
....++.|+|.+|+|||++|..++...... +.-..++|++....+.+.+ +.++++.++.
T Consensus 94 ~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~R-l~~ia~~~~~ 156 (316)
T TIGR02239 94 ETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPER-LLAIAERYGL 156 (316)
T ss_pred CCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHH-HHHHHHHcCC
Confidence 347899999999999999999987532221 1123579999988888776 4445555543
No 306
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.72 E-value=0.089 Score=53.43 Aligned_cols=118 Identities=14% Similarity=0.107 Sum_probs=62.2
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCc--cCHHHHHHHHHHHccCCCCCCCcchHHHHHHHHHHh
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQ--FDVLRVTTTILKSVTSKPADVDDDLNLLQVCLREKL 277 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l 277 (1399)
..+++|+|..|.|||||.+.++... ......+++.-... .+..+..+ ..++.-. +... -+...-.+.+.+
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~---~~~~G~v~~~g~~~~~~~~~~~~~---~~i~~~~-qLS~-G~~qrl~laral 97 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLY---KPDSGEILVDGKEVSFASPRDARR---AGIAMVY-QLSV-GERQMVEIARAL 97 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEECCcCCHHHHHh---cCeEEEE-ecCH-HHHHHHHHHHHH
Confidence 4589999999999999999998732 23344454432111 11111111 1111100 0111 223333455566
Q ss_pred cCcceEEEecCCcCC-CcchhhhhhcccCCC-CCCcEEEEEcCChhhHHh
Q 040015 278 AGKKFLLVLDDVWSR-RNDDWDLICSPLKAG-ARGSKIIITTRDSSIAAS 325 (1399)
Q Consensus 278 ~~~r~LlvlDdv~~~-~~~~~~~l~~~l~~~-~~gs~ilvTtR~~~v~~~ 325 (1399)
-.++-++++|+--.. +....+.+...+... ..|..||++|.+......
T Consensus 98 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~ 147 (163)
T cd03216 98 ARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFE 147 (163)
T ss_pred hcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 667788999986432 222333444444322 236678888888765443
No 307
>PRK08233 hypothetical protein; Provisional
Probab=94.69 E-value=0.084 Score=55.00 Aligned_cols=24 Identities=25% Similarity=0.465 Sum_probs=21.8
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcC
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
..+|+|.|.+|+||||+|+.++..
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 479999999999999999999874
No 308
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.64 E-value=0.15 Score=56.45 Aligned_cols=90 Identities=16% Similarity=0.155 Sum_probs=49.2
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCH--HHHHHHHHHHccCCC---CCCCcchHHHHHHH
Q 040015 199 NVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDV--LRVTTTILKSVTSKP---ADVDDDLNLLQVCL 273 (1399)
Q Consensus 199 ~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~--~~~~~~i~~~l~~~~---~~~~~~~~~l~~~l 273 (1399)
..+++.++|++|+||||++..++... +..-..++++++. .+.. .+-++...+..+... ....+........+
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l--~~~g~~V~li~~D-~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l 147 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKL--KKQGKSVLLAAGD-TFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAI 147 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH--HhcCCEEEEEeCC-CCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHH
Confidence 46899999999999999999888632 2222345566544 2322 233344455544321 11112122233444
Q ss_pred HHHhcCcceEEEecCCcC
Q 040015 274 REKLAGKKFLLVLDDVWS 291 (1399)
Q Consensus 274 ~~~l~~~r~LlvlDdv~~ 291 (1399)
........=++++|-.-.
T Consensus 148 ~~~~~~~~D~ViIDT~G~ 165 (272)
T TIGR00064 148 QKAKARNIDVVLIDTAGR 165 (272)
T ss_pred HHHHHCCCCEEEEeCCCC
Confidence 444444455788887643
No 309
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=94.63 E-value=0.13 Score=54.07 Aligned_cols=81 Identities=19% Similarity=0.215 Sum_probs=42.5
Q ss_pred EEEEEcCCCchHHHHHHHHhcCcccccccc---ceEEEEeCCccCHHHHHHHHHHHccCCC---CCCCcchHHHHHHHHH
Q 040015 202 VVPIVGMGGIGKTTVAQLVYNDSRVDGRFD---LKVWVCVSDQFDVLRVTTTILKSVTSKP---ADVDDDLNLLQVCLRE 275 (1399)
Q Consensus 202 vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~---~~~wv~~~~~~~~~~~~~~i~~~l~~~~---~~~~~~~~~l~~~l~~ 275 (1399)
||+|.|.+|+||||+|+.+...... .... ....+....-....... ..-....... ....-+.+.+.+.+..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~-~~~~~~~~~~~~~~d~~~~~~~~~-~~~~~~~~~~~~~~p~a~d~~~l~~~l~~ 78 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNK-RGIPAMEMDIILSLDDFYDDYHLR-DRKGRGENRYNFDHPDAFDFDLLKEDLKA 78 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTT-CTTTCCCSEEEEEGGGGBHHHHHH-HHHHHCTTTSSTTSGGGBSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCc-cCcCccceeEEEeecccccccchh-hHhhccccccCCCCccccCHHHHHHHHHH
Confidence 7999999999999999999873221 1122 23333333322222222 2222211111 1112246777777777
Q ss_pred HhcCcceEE
Q 040015 276 KLAGKKFLL 284 (1399)
Q Consensus 276 ~l~~~r~Ll 284 (1399)
..+++..-+
T Consensus 79 L~~g~~i~~ 87 (194)
T PF00485_consen 79 LKNGGSIEI 87 (194)
T ss_dssp HHTTSCEEE
T ss_pred HhCCCcccc
Confidence 666665433
No 310
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.62 E-value=0.12 Score=55.62 Aligned_cols=80 Identities=11% Similarity=0.188 Sum_probs=50.6
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCcc--ccccccceEEEEeCCccCHHHHHHHHHHHccCCCCCCCcchHHHHHHHHHHh
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSR--VDGRFDLKVWVCVSDQFDVLRVTTTILKSVTSKPADVDDDLNLLQVCLREKL 277 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~--~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l 277 (1399)
-|+|.++|++|.|||+|+++.++... ..++|....-+.+.. ..++.+...+ ....+..+.+.|++.+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins----hsLFSKWFsE-------SgKlV~kmF~kI~ELv 245 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS----HSLFSKWFSE-------SGKLVAKMFQKIQELV 245 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh----hHHHHHHHhh-------hhhHHHHHHHHHHHHH
Confidence 47899999999999999999998643 345555444454422 1222222221 1122666777788887
Q ss_pred cCcce--EEEecCCc
Q 040015 278 AGKKF--LLVLDDVW 290 (1399)
Q Consensus 278 ~~~r~--LlvlDdv~ 290 (1399)
.++.. .+.+|.|.
T Consensus 246 ~d~~~lVfvLIDEVE 260 (423)
T KOG0744|consen 246 EDRGNLVFVLIDEVE 260 (423)
T ss_pred hCCCcEEEEEeHHHH
Confidence 76654 35578884
No 311
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.61 E-value=0.073 Score=60.85 Aligned_cols=83 Identities=17% Similarity=0.264 Sum_probs=50.1
Q ss_pred CCccccchhHHHHHHHHHhccC-------CCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccc---cceEEEEeC-
Q 040015 171 ESCVYGRENDKNAIVELLMVED-------DSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRF---DLKVWVCVS- 239 (1399)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~-------~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f---~~~~wv~~~- 239 (1399)
+..+||.++.++.+.-.+.... +-......+-|.++|++|+|||++|+.++.. ....| +..-++..+
T Consensus 11 d~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~--l~~~fi~vdat~~~e~g~ 88 (441)
T TIGR00390 11 DKYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKL--ANAPFIKVEATKFTEVGY 88 (441)
T ss_pred hhhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHH--hCCeEEEeecceeecCCc
Confidence 3468999999999887776430 0001122467889999999999999999873 33333 322222221
Q ss_pred CccCHHHHHHHHHHHc
Q 040015 240 DQFDVLRVTTTILKSV 255 (1399)
Q Consensus 240 ~~~~~~~~~~~i~~~l 255 (1399)
...+.+.+++.+....
T Consensus 89 vG~dvE~i~r~l~e~A 104 (441)
T TIGR00390 89 VGRDVESMVRDLTDAA 104 (441)
T ss_pred ccCCHHHHHHHHHHHH
Confidence 1224556665555443
No 312
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=94.59 E-value=0.15 Score=55.13 Aligned_cols=26 Identities=31% Similarity=0.442 Sum_probs=23.3
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHhcC
Q 040015 198 NNVSVVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 198 ~~~~vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
....+++|.|..|+|||||++.+...
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999999873
No 313
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=94.59 E-value=0.11 Score=66.54 Aligned_cols=134 Identities=16% Similarity=0.082 Sum_probs=73.1
Q ss_pred CccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHH
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTI 251 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 251 (1399)
..++|+...++.+.+.+..-. ....-|.|+|..|+|||++|+.+++....+ -...+.+++..... ..+-..+
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a-----~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~--~~~~v~i~c~~~~~-~~~~~~l 447 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVA-----QSDSTVLILGETGTGKELIARAIHNLSGRN--NRRMVKMNCAAMPA-GLLESDL 447 (686)
T ss_pred cceeecCHHHHHHHHHHHHHh-----CCCCCEEEECCCCcCHHHHHHHHHHhcCCC--CCCeEEEecccCCh-hHhhhhh
Confidence 368999999998877776432 123467799999999999999998743211 12344555554321 1111111
Q ss_pred HHHccCCCCCCCcchHHHHHHHHHHhcCcceEEEecCCcCCCcchhhhhhcccCCCC-----------CCcEEEEEcCC
Q 040015 252 LKSVTSKPADVDDDLNLLQVCLREKLAGKKFLLVLDDVWSRRNDDWDLICSPLKAGA-----------RGSKIIITTRD 319 (1399)
Q Consensus 252 ~~~l~~~~~~~~~~~~~l~~~l~~~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtR~ 319 (1399)
.....+..... .......+ -....-.|+||+|..-..+....+...+..+. ...|||.||..
T Consensus 448 fg~~~~~~~g~---~~~~~g~l---e~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~ 520 (686)
T PRK15429 448 FGHERGAFTGA---SAQRIGRF---ELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNR 520 (686)
T ss_pred cCccccccccc---ccchhhHH---HhcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCC
Confidence 11111100000 00111111 11234579999997765555666655553221 24588888864
No 314
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.57 E-value=0.059 Score=52.33 Aligned_cols=102 Identities=16% Similarity=0.339 Sum_probs=63.9
Q ss_pred ccccccCCCCcccEEEecCCCCccc-CcccCCCCCCcEEeccCCccccccc-cccCCCCCcEEEccCCCCCCCcC-hhhc
Q 040015 578 VPRDILPRLKCLRVLSFSACRITAL-PDSVGDLKHLRYLDLSRTAIKQLPD-STGNLCNLQSIILLECYSLSKLP-TDLG 654 (1399)
Q Consensus 578 ~~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~L~~L~Ls~n~i~~lP~-~i~~L~~L~~L~L~~~~~~~~lP-~~i~ 654 (1399)
++..+|.++.+|+.+.+.. .+..+ ..+|..+.+|+.+.+..+ +..++. .|.++.+|+.+.+.. .+..++ ..|.
T Consensus 3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~ 78 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFS 78 (129)
T ss_dssp E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTT
T ss_pred ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc--ccccccccccc
Confidence 5677899999999999985 68888 567899999999999885 887766 678888999999975 344444 3477
Q ss_pred cCCCCCEEEccCCcccccCcc-ccCCCCCCcc
Q 040015 655 NLTGLRHLRMSGSRLREMPMK-MYKLKNLQTL 685 (1399)
Q Consensus 655 ~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L 685 (1399)
..++|+.+++..+ +..++.. +.+. +|+.+
T Consensus 79 ~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i 108 (129)
T PF13306_consen 79 NCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEI 108 (129)
T ss_dssp T-TTECEEEETTT--BEEHTTTTTT--T--EE
T ss_pred ccccccccccCcc-ccEEchhhhcCC-CceEE
Confidence 8999999999765 5555544 3333 44443
No 315
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=94.53 E-value=0.05 Score=50.80 Aligned_cols=52 Identities=17% Similarity=0.290 Sum_probs=37.4
Q ss_pred CccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcC
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
..++|.+-..+.|++.+...-......+.-|++..|..|+|||.+|+.++++
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 3577777666666666654321123567889999999999999999888875
No 316
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=94.51 E-value=1.4 Score=45.52 Aligned_cols=157 Identities=16% Similarity=0.128 Sum_probs=82.3
Q ss_pred ccccc-hhHHHHHHHHHhccCC------CCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHH
Q 040015 173 CVYGR-ENDKNAIVELLMVEDD------SSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVL 245 (1399)
Q Consensus 173 ~~vGr-~~~~~~l~~~L~~~~~------~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 245 (1399)
++||+ +..+++|.+.+.-+-. .-+-.+.+-+.++|++|.|||-||++|+++ ....|+.||...
T Consensus 147 eMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahh-------t~c~firvsgse--- 216 (404)
T KOG0728|consen 147 EMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH-------TDCTFIRVSGSE--- 216 (404)
T ss_pred HHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhh-------cceEEEEechHH---
Confidence 35665 7777777776643210 002234566789999999999999999974 235667777642
Q ss_pred HHHHHHHHHccCCCCCCCcchHHHHHHHHHHhcCcceEEEecCCcCCCc-----------chhh---hhhcccCC--CCC
Q 040015 246 RVTTTILKSVTSKPADVDDDLNLLQVCLREKLAGKKFLLVLDDVWSRRN-----------DDWD---LICSPLKA--GAR 309 (1399)
Q Consensus 246 ~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~~r~LlvlDdv~~~~~-----------~~~~---~l~~~l~~--~~~ 309 (1399)
+.+..+. .. ..-..++.-.-+ ..-+..|.+|.++.... +... ++...+.. ..+
T Consensus 217 -lvqk~ig----eg---srmvrelfvmar---ehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatk 285 (404)
T KOG0728|consen 217 -LVQKYIG----EG---SRMVRELFVMAR---EHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATK 285 (404)
T ss_pred -HHHHHhh----hh---HHHHHHHHHHHH---hcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcccccccc
Confidence 2222111 10 000222222222 23467888888754211 1111 12222222 235
Q ss_pred CcEEEEEcCChhhHHhc-----CccceEeCCCCCccchHHHHHHhh
Q 040015 310 GSKIIITTRDSSIAASM-----GTVAAHHLECLAFEDCSSIFMNQA 350 (1399)
Q Consensus 310 gs~ilvTtR~~~v~~~~-----~~~~~~~l~~L~~~~~~~lf~~~a 350 (1399)
.-+||..|..-++.... ..+..++.++-+++.-.++++-+.
T Consensus 286 nikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 286 NIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred ceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 56788877654443321 133557777766666566665443
No 317
>PRK05439 pantothenate kinase; Provisional
Probab=94.51 E-value=0.17 Score=56.38 Aligned_cols=81 Identities=19% Similarity=0.102 Sum_probs=44.8
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHhcCcccccc--ccceEEEEeCCccCHHHHHHHHHHHccCCCCCCCcchHHHHHHHHH
Q 040015 198 NNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGR--FDLKVWVCVSDQFDVLRVTTTILKSVTSKPADVDDDLNLLQVCLRE 275 (1399)
Q Consensus 198 ~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~--f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~ 275 (1399)
+..-+|+|.|.+|+||||+|+.+..- .+.. -..+.-++..+-+...+.+.+- ..+........-+.+.+...+..
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~--l~~~~~~~~v~vi~~DdFy~~~~~l~~~-~l~~~kg~Pes~D~~~l~~~L~~ 160 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQAL--LSRWPEHPKVELVTTDGFLYPNAVLEER-GLMKRKGFPESYDMRALLRFLSD 160 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH--HHhhCCCCceEEEeccccccCHHHHhhh-hccccCCCcccccHHHHHHHHHH
Confidence 45789999999999999999988762 2221 1234445554433333222210 11111111112246777777777
Q ss_pred HhcCcc
Q 040015 276 KLAGKK 281 (1399)
Q Consensus 276 ~l~~~r 281 (1399)
...++.
T Consensus 161 Lk~G~~ 166 (311)
T PRK05439 161 VKSGKP 166 (311)
T ss_pred HHcCCC
Confidence 666664
No 318
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=94.47 E-value=0.092 Score=57.33 Aligned_cols=81 Identities=19% Similarity=0.192 Sum_probs=48.7
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHHHHccCCCCCCCcchHHHHHHHHHHhcC
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTILKSVTSKPADVDDDLNLLQVCLREKLAG 279 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~ 279 (1399)
..-+.++|.+|+|||.||.++.+..- +.. -.+.++++ .+++.++....... .....+.+.++
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g-~sv~f~~~------~el~~~Lk~~~~~~---------~~~~~l~~~l~- 166 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELL-KAG-ISVLFITA------PDLLSKLKAAFDEG---------RLEEKLLRELK- 166 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHH-HcC-CeEEEEEH------HHHHHHHHHHHhcC---------chHHHHHHHhh-
Confidence 45688999999999999999999543 222 24555544 34555555544321 11112222121
Q ss_pred cceEEEecCCcCCCcchhh
Q 040015 280 KKFLLVLDDVWSRRNDDWD 298 (1399)
Q Consensus 280 ~r~LlvlDdv~~~~~~~~~ 298 (1399)
+-=||||||+--.....|.
T Consensus 167 ~~dlLIiDDlG~~~~~~~~ 185 (254)
T COG1484 167 KVDLLIIDDIGYEPFSQEE 185 (254)
T ss_pred cCCEEEEecccCccCCHHH
Confidence 2348999999776556665
No 319
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=94.40 E-value=0.064 Score=59.81 Aligned_cols=26 Identities=27% Similarity=0.382 Sum_probs=23.6
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHhcC
Q 040015 198 NNVSVVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 198 ~~~~vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
...+.++|||++|.|||.+|+.+++.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 45789999999999999999999984
No 320
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.39 E-value=0.14 Score=59.81 Aligned_cols=99 Identities=15% Similarity=0.233 Sum_probs=61.4
Q ss_pred CccccchhHHHHHHHHHhccCCCC-----CCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHH
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSS-----SSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLR 246 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~-----~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 246 (1399)
.++=|.+..+.++.+++..-..+. +-...+=|.++|++|.|||.||+++++... -. ++.++.+
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~--vP-----f~~isAp----- 257 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELG--VP-----FLSISAP----- 257 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcC--Cc-----eEeecch-----
Confidence 457788988888777765422100 112245677999999999999999999533 22 3344332
Q ss_pred HHHHHHHHccCCCCCCCcchHHHHHHHHHHhcCcceEEEecCCcC
Q 040015 247 VTTTILKSVTSKPADVDDDLNLLQVCLREKLAGKKFLLVLDDVWS 291 (1399)
Q Consensus 247 ~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~~r~LlvlDdv~~ 291 (1399)
+|+..+.+. ..+.+.+...+....-++++++|+++-
T Consensus 258 ---eivSGvSGE------SEkkiRelF~~A~~~aPcivFiDeIDA 293 (802)
T KOG0733|consen 258 ---EIVSGVSGE------SEKKIRELFDQAKSNAPCIVFIDEIDA 293 (802)
T ss_pred ---hhhcccCcc------cHHHHHHHHHHHhccCCeEEEeecccc
Confidence 223322221 144455555556667799999999854
No 321
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=94.39 E-value=0.18 Score=52.88 Aligned_cols=85 Identities=15% Similarity=0.212 Sum_probs=49.0
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEE---------eCCccCHHHH--HHHHHHHccCCCCCCCc--
Q 040015 198 NNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVC---------VSDQFDVLRV--TTTILKSVTSKPADVDD-- 264 (1399)
Q Consensus 198 ~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~---------~~~~~~~~~~--~~~i~~~l~~~~~~~~~-- 264 (1399)
.+..+|.++||+|.||||..+.++.+.. ..+..-.-|+ ...+.|+++. .++.+++......+..-
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~--~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~Ts 94 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLH--AKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTS 94 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHh--hccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhh
Confidence 4466888899999999999999987432 2222222222 2333455443 56777887665543321
Q ss_pred ------chHHHHHHHHHHhcCcceEE
Q 040015 265 ------DLNLLQVCLREKLAGKKFLL 284 (1399)
Q Consensus 265 ------~~~~l~~~l~~~l~~~r~Ll 284 (1399)
..++....+.+.-..-+|.|
T Consensus 95 LNLF~tk~dqv~~~iek~~~~~~~~l 120 (366)
T KOG1532|consen 95 LNLFATKFDQVIELIEKRAEEFDYVL 120 (366)
T ss_pred HHHHHHHHHHHHHHHHHhhcccCEEE
Confidence 24555555555544434444
No 322
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=94.39 E-value=0.16 Score=57.92 Aligned_cols=57 Identities=16% Similarity=0.254 Sum_probs=41.4
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhcCcccc----ccccceEEEEeCCccCHHHHHHHHHHHcc
Q 040015 199 NVSVVPIVGMGGIGKTTVAQLVYNDSRVD----GRFDLKVWVCVSDQFDVLRVTTTILKSVT 256 (1399)
Q Consensus 199 ~~~vv~I~G~gG~GKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 256 (1399)
...++-|+|.+|+|||++|.+++.+.... ..=..++||+....++++++. ++++.++
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~g 154 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARG 154 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcC
Confidence 46799999999999999999997643221 111378999999988887654 4555544
No 323
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.37 E-value=0.053 Score=57.68 Aligned_cols=23 Identities=26% Similarity=0.257 Sum_probs=20.7
Q ss_pred cEEEEEEcCCCchHHHHHHHHhc
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
.+++.|+|+.|.||||+.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 47899999999999999999874
No 324
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.36 E-value=0.13 Score=52.96 Aligned_cols=22 Identities=41% Similarity=0.564 Sum_probs=19.8
Q ss_pred EEEEEcCCCchHHHHHHHHhcC
Q 040015 202 VVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 202 vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
++.++|++|+||||++..++..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~ 23 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALY 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6789999999999999999863
No 325
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=94.35 E-value=0.15 Score=52.46 Aligned_cols=121 Identities=21% Similarity=0.200 Sum_probs=58.7
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCC--ccCHHHHHHHHHHHccCCCCCC--------CcchHHH
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSD--QFDVLRVTTTILKSVTSKPADV--------DDDLNLL 269 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~--~~~~~~~~~~i~~~l~~~~~~~--------~~~~~~l 269 (1399)
..+++|+|..|.|||||++.++.-. ......+++.-.. ........+.+ ..+.....-. -+.-+..
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~i-~~~~q~~~~~~~tv~~~lLS~G~~q 103 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLL---RPTSGRVRLDGADISQWDPNELGDHV-GYLPQDDELFSGSIAENILSGGQRQ 103 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcc---CCCCCeEEECCEEcccCCHHHHHhhe-EEECCCCccccCcHHHHCcCHHHHH
Confidence 4589999999999999999998632 1222333322110 01111111100 0000000000 0111222
Q ss_pred HHHHHHHhcCcceEEEecCCcCC-CcchhhhhhcccCC-CCCCcEEEEEcCChhhHH
Q 040015 270 QVCLREKLAGKKFLLVLDDVWSR-RNDDWDLICSPLKA-GARGSKIIITTRDSSIAA 324 (1399)
Q Consensus 270 ~~~l~~~l~~~r~LlvlDdv~~~-~~~~~~~l~~~l~~-~~~gs~ilvTtR~~~v~~ 324 (1399)
.-.+...+..++=++++|+-... +......+...+.. ...|..||++|.+.....
T Consensus 104 rv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 160 (173)
T cd03246 104 RLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA 160 (173)
T ss_pred HHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 23345555666678999987432 12222333333322 123667888888877664
No 326
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.35 E-value=0.11 Score=58.74 Aligned_cols=88 Identities=16% Similarity=0.107 Sum_probs=47.8
Q ss_pred CcEEEEEEcCCCchHHH-HHHHHhcCccccccccceEEEEeCCc-cCHHHHHHHHHHHccCCCCCCCcchHHHHHHHHHH
Q 040015 199 NVSVVPIVGMGGIGKTT-VAQLVYNDSRVDGRFDLKVWVCVSDQ-FDVLRVTTTILKSVTSKPADVDDDLNLLQVCLREK 276 (1399)
Q Consensus 199 ~~~vv~I~G~gG~GKTt-La~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~ 276 (1399)
+.+||.+||+.|||||| ||+..++-.. ...=..++.|+...- ....+-++.-++-++.+.....+ ..++...+...
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~-~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~-~~el~~ai~~l 279 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVM-LKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYS-PKELAEAIEAL 279 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHh-hccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecC-HHHHHHHHHHh
Confidence 37899999999999985 5666665321 122245666665432 22333344444545554433333 55555555443
Q ss_pred hcCcceEEEecCCc
Q 040015 277 LAGKKFLLVLDDVW 290 (1399)
Q Consensus 277 l~~~r~LlvlDdv~ 290 (1399)
++. =+|.+|=+.
T Consensus 280 -~~~-d~ILVDTaG 291 (407)
T COG1419 280 -RDC-DVILVDTAG 291 (407)
T ss_pred -hcC-CEEEEeCCC
Confidence 333 345556553
No 327
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=94.35 E-value=0.44 Score=46.59 Aligned_cols=80 Identities=16% Similarity=0.272 Sum_probs=55.2
Q ss_pred hhhhHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhccC-CChhHHHHHHHHHHhhhchhhH
Q 040015 3 VGEAFLSAFLQVLFDRLASREFLNLLRSRKYDDLLEKLKITLLTVTALLNDAEEKQF-NSPSVGKWLHMAKDALYDAEDV 81 (1399)
Q Consensus 3 ~~~~~~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~L~~~l~~i~~~l~~a~~~~~-~~~~~~~wl~~lr~~~yd~ed~ 81 (1399)
++||+++++++.++..+. .........+.-.++|..++..|.=++.+.+.-.. -++.-+.-++++.+...+++++
T Consensus 6 ~~gaalG~~~~eLlk~v~----~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~L 81 (147)
T PF05659_consen 6 VGGAALGAVFGELLKAVI----DASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKEL 81 (147)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHH
Confidence 455555555555554433 33333334667888999999999999999887432 2333367788999999999999
Q ss_pred HHHHh
Q 040015 82 LDELA 86 (1399)
Q Consensus 82 ld~~~ 86 (1399)
+..|.
T Consensus 82 V~k~s 86 (147)
T PF05659_consen 82 VEKCS 86 (147)
T ss_pred HHHhc
Confidence 98874
No 328
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.34 E-value=0.22 Score=58.84 Aligned_cols=88 Identities=18% Similarity=0.085 Sum_probs=48.2
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCcc-CHHHHHHHHHHHccCCCCCCCcchHHHHHHHHHHhc
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQF-DVLRVTTTILKSVTSKPADVDDDLNLLQVCLREKLA 278 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~ 278 (1399)
.+++.++|++|+||||++..++........-..+..|+..... ...+.++...+.++.+...... ..++...+.+. .
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~-~~~l~~~l~~~-~ 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYD-PKELAKALEQL-R 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCC-HHhHHHHHHHh-C
Confidence 4699999999999999988887532201222346666654321 1122233334444433322222 44555555543 2
Q ss_pred CcceEEEecCCc
Q 040015 279 GKKFLLVLDDVW 290 (1399)
Q Consensus 279 ~~r~LlvlDdv~ 290 (1399)
..=+||+|..-
T Consensus 299 -~~DlVlIDt~G 309 (424)
T PRK05703 299 -DCDVILIDTAG 309 (424)
T ss_pred -CCCEEEEeCCC
Confidence 34678889763
No 329
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=94.31 E-value=0.14 Score=58.52 Aligned_cols=45 Identities=22% Similarity=0.168 Sum_probs=34.2
Q ss_pred cccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcC
Q 040015 174 VYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 174 ~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
+||+...++++.+.+..-. ..-.-|.|+|..|+||+++|+.+++.
T Consensus 1 liG~S~~m~~~~~~~~~~a-----~~~~pVLI~GE~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLA-----PLDRPVLIIGERGTGKELIAARLHYL 45 (329)
T ss_pred CCcCCHHHHHHHHHHHHHh-----CCCCCEEEECCCCChHHHHHHHHHHh
Confidence 4788878888777776543 12345679999999999999999864
No 330
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.25 E-value=0.18 Score=59.65 Aligned_cols=89 Identities=17% Similarity=0.083 Sum_probs=46.6
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCc-cCHHHHHHHHHHHccCCCCCCCcchHHHHHHHHHHh
Q 040015 199 NVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQ-FDVLRVTTTILKSVTSKPADVDDDLNLLQVCLREKL 277 (1399)
Q Consensus 199 ~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l 277 (1399)
..++|+|+|.+|+||||++.+++.....+.....+..++.... ....+.++...+.++.......+ ...+...+++.
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d-~~~L~~aL~~l- 426 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADS-AESLLDLLERL- 426 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCc-HHHHHHHHHHh-
Confidence 4679999999999999999888763211111233455554321 11122233333333322222222 34455544433
Q ss_pred cCcceEEEecCCc
Q 040015 278 AGKKFLLVLDDVW 290 (1399)
Q Consensus 278 ~~~r~LlvlDdv~ 290 (1399)
. ..=+|++|..-
T Consensus 427 ~-~~DLVLIDTaG 438 (559)
T PRK12727 427 R-DYKLVLIDTAG 438 (559)
T ss_pred c-cCCEEEecCCC
Confidence 3 34588888874
No 331
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=94.22 E-value=0.18 Score=55.44 Aligned_cols=130 Identities=17% Similarity=0.103 Sum_probs=66.9
Q ss_pred HHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHHHHccC-C
Q 040015 180 DKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTILKSVTS-K 258 (1399)
Q Consensus 180 ~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~-~ 258 (1399)
..+.+...|... +...-++|+|..|.||||+.+.++.... .....+++.-.+-... +-..++...... .
T Consensus 97 ~~~~~l~~l~~~------~~~~~~~i~g~~g~GKttl~~~l~~~~~---~~~G~i~~~g~~v~~~-d~~~ei~~~~~~~~ 166 (270)
T TIGR02858 97 AADKLLPYLVRN------NRVLNTLIISPPQCGKTTLLRDLARILS---TGISQLGLRGKKVGIV-DERSEIAGCVNGVP 166 (270)
T ss_pred cHHHHHHHHHhC------CCeeEEEEEcCCCCCHHHHHHHHhCccC---CCCceEEECCEEeecc-hhHHHHHHHhcccc
Confidence 344455555433 2357889999999999999999997422 2233333321110000 011233222211 1
Q ss_pred CC------CCCcchHHHHHHHHHHh-cCcceEEEecCCcCCCcchhhhhhcccCCCCCCcEEEEEcCChhhHHh
Q 040015 259 PA------DVDDDLNLLQVCLREKL-AGKKFLLVLDDVWSRRNDDWDLICSPLKAGARGSKIIITTRDSSIAAS 325 (1399)
Q Consensus 259 ~~------~~~~~~~~l~~~l~~~l-~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~ 325 (1399)
.. +..+.... ...+...+ ...+=+|++|.+-. .+.+..+...+. .|..||+||.+..+...
T Consensus 167 q~~~~~r~~v~~~~~k-~~~~~~~i~~~~P~villDE~~~--~e~~~~l~~~~~---~G~~vI~ttH~~~~~~~ 234 (270)
T TIGR02858 167 QHDVGIRTDVLDGCPK-AEGMMMLIRSMSPDVIVVDEIGR--EEDVEALLEALH---AGVSIIATAHGRDVEDL 234 (270)
T ss_pred cccccccccccccchH-HHHHHHHHHhCCCCEEEEeCCCc--HHHHHHHHHHHh---CCCEEEEEechhHHHHH
Confidence 11 11111111 11223333 25778999999843 344555544442 47789999998766543
No 332
>PHA02244 ATPase-like protein
Probab=94.22 E-value=0.13 Score=57.99 Aligned_cols=43 Identities=16% Similarity=0.291 Sum_probs=29.2
Q ss_pred Cccccchh----HHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcC
Q 040015 172 SCVYGREN----DKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 172 ~~~vGr~~----~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
..++|... ....+..++... . -|.|+|+.|+|||++|+++++.
T Consensus 96 ~~~ig~sp~~~~~~~ri~r~l~~~--------~-PVLL~GppGtGKTtLA~aLA~~ 142 (383)
T PHA02244 96 TTKIASNPTFHYETADIAKIVNAN--------I-PVFLKGGAGSGKNHIAEQIAEA 142 (383)
T ss_pred CcccCCCHHHHHHHHHHHHHHhcC--------C-CEEEECCCCCCHHHHHHHHHHH
Confidence 34556443 344555555432 2 3578999999999999999973
No 333
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.21 E-value=0.4 Score=56.29 Aligned_cols=154 Identities=19% Similarity=0.267 Sum_probs=83.1
Q ss_pred EEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHHHHccCCCCCCCcchHHHHHHHHHHhcCc
Q 040015 201 SVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTILKSVTSKPADVDDDLNLLQVCLREKLAGK 280 (1399)
Q Consensus 201 ~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~~ 280 (1399)
.=|.+||++|.|||-||++|+|. -+..| ++|-.. +++ ...-+. ....+....++.-..-
T Consensus 546 sGvLL~GPPGCGKTLlAKAVANE--ag~NF-----isVKGP----ELl----NkYVGE------SErAVR~vFqRAR~sa 604 (802)
T KOG0733|consen 546 SGVLLCGPPGCGKTLLAKAVANE--AGANF-----ISVKGP----ELL----NKYVGE------SERAVRQVFQRARASA 604 (802)
T ss_pred CceEEeCCCCccHHHHHHHHhhh--ccCce-----EeecCH----HHH----HHHhhh------HHHHHHHHHHHhhcCC
Confidence 34679999999999999999994 33444 555432 222 211111 1233333334443567
Q ss_pred ceEEEecCCcCC-----Ccchh------hhhhcccCC--CCCCcEEEEEcCChhhHHh-c-C---ccceEeCCCCCccch
Q 040015 281 KFLLVLDDVWSR-----RNDDW------DLICSPLKA--GARGSKIIITTRDSSIAAS-M-G---TVAAHHLECLAFEDC 342 (1399)
Q Consensus 281 r~LlvlDdv~~~-----~~~~~------~~l~~~l~~--~~~gs~ilvTtR~~~v~~~-~-~---~~~~~~l~~L~~~~~ 342 (1399)
+++|.||.++.- +...| +.+..-+.. .-.|.-||-.|..+++... + . -++..-++.-+.+|-
T Consensus 605 PCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR 684 (802)
T KOG0733|consen 605 PCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEER 684 (802)
T ss_pred CeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHH
Confidence 899999998531 11112 223222322 2356677777766665332 2 1 235666776677788
Q ss_pred HHHHHHhhhcCCCC-CCCccHHHHHHHHHHHccCch
Q 040015 343 SSIFMNQAFENRNT-GISPDLETIGAEIVNKCEGLL 377 (1399)
Q Consensus 343 ~~lf~~~a~~~~~~-~~~~~~~~~~~~i~~~~~g~P 377 (1399)
.++++...-....+ ..+-++.++|+. .+|.|.-
T Consensus 685 ~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 685 VAILKTITKNTKPPLSSDVDLDEIARN--TKCEGFT 718 (802)
T ss_pred HHHHHHHhccCCCCCCcccCHHHHhhc--ccccCCc
Confidence 88887776432221 222344444432 3555654
No 334
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=94.15 E-value=0.099 Score=55.85 Aligned_cols=119 Identities=18% Similarity=0.228 Sum_probs=68.5
Q ss_pred CccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHH
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTI 251 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 251 (1399)
..++|..-.++.|+..+...-..+...+.-|++.+|..|+||.-+|+.++++....+--. ......
T Consensus 82 ~~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S--------------~~V~~f 147 (344)
T KOG2170|consen 82 RALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRS--------------PFVHHF 147 (344)
T ss_pred HHhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccc--------------hhHHHh
Confidence 457888777777777776543233456788999999999999999999987532111000 000111
Q ss_pred HHHccCCCC-CCCcchHHHHHHHHHHhc-CcceEEEecCCcCCCcchhhhhhccc
Q 040015 252 LKSVTSKPA-DVDDDLNLLQVCLREKLA-GKKFLLVLDDVWSRRNDDWDLICSPL 304 (1399)
Q Consensus 252 ~~~l~~~~~-~~~~~~~~l~~~l~~~l~-~~r~LlvlDdv~~~~~~~~~~l~~~l 304 (1399)
.....-+.. ...+-.++++..+++.++ -+|.|+|+|+++.-...-.+.+...+
T Consensus 148 vat~hFP~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~gLld~lkpfL 202 (344)
T KOG2170|consen 148 VATLHFPHASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPPGLLDVLKPFL 202 (344)
T ss_pred hhhccCCChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcCHhHHHHHhhhh
Confidence 111111111 111113455556666554 47999999999665444444444433
No 335
>PRK14974 cell division protein FtsY; Provisional
Probab=94.12 E-value=0.27 Score=55.76 Aligned_cols=91 Identities=18% Similarity=0.144 Sum_probs=48.5
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccC--HHHHHHHHHHHccCCCCC---CCcchHHHHHHH
Q 040015 199 NVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFD--VLRVTTTILKSVTSKPAD---VDDDLNLLQVCL 273 (1399)
Q Consensus 199 ~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~--~~~~~~~i~~~l~~~~~~---~~~~~~~l~~~l 273 (1399)
+..+|.++|+.|+||||++..++.... ...+ .++.+.. +.+. ..+-++.....++.+... ..+....+...+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~-~~g~-~V~li~~-Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai 215 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLK-KNGF-SVVIAAG-DTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAI 215 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH-HcCC-eEEEecC-CcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHH
Confidence 468999999999999998888876322 1223 2334432 3332 223345566666543321 112112223333
Q ss_pred HHHhcCcceEEEecCCcCC
Q 040015 274 REKLAGKKFLLVLDDVWSR 292 (1399)
Q Consensus 274 ~~~l~~~r~LlvlDdv~~~ 292 (1399)
+.......=+|++|-+-..
T Consensus 216 ~~~~~~~~DvVLIDTaGr~ 234 (336)
T PRK14974 216 EHAKARGIDVVLIDTAGRM 234 (336)
T ss_pred HHHHhCCCCEEEEECCCcc
Confidence 3322222338889987543
No 336
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=94.11 E-value=0.19 Score=55.63 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=21.8
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHhc
Q 040015 198 NNVSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 198 ~~~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
....+|+|.|..|+||||+|+.+..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ 84 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQA 84 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4568999999999999999987754
No 337
>PTZ00035 Rad51 protein; Provisional
Probab=94.09 E-value=0.26 Score=56.36 Aligned_cols=59 Identities=15% Similarity=0.181 Sum_probs=41.5
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHhcCccc----cccccceEEEEeCCccCHHHHHHHHHHHccC
Q 040015 198 NNVSVVPIVGMGGIGKTTVAQLVYNDSRV----DGRFDLKVWVCVSDQFDVLRVTTTILKSVTS 257 (1399)
Q Consensus 198 ~~~~vv~I~G~gG~GKTtLa~~v~~~~~~----~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 257 (1399)
....++.|+|..|+|||+++..++-.... .+.=..++||+....+++++ +.+++++++.
T Consensus 116 ~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~er-i~~ia~~~g~ 178 (337)
T PTZ00035 116 ETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPER-IVQIAERFGL 178 (337)
T ss_pred CCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHH-HHHHHHHhCC
Confidence 45789999999999999999988743221 11223567999888888776 4455665543
No 338
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.08 E-value=0.18 Score=60.02 Aligned_cols=74 Identities=20% Similarity=0.165 Sum_probs=48.2
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHHHHccCCCCCCCcchHHHHHHHHHHhcC
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTILKSVTSKPADVDDDLNLLQVCLREKLAG 279 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~ 279 (1399)
..-|.|.|..|+|||+||+++++... +++.-.+.+|+++.-.... +..| ...+...+.+.+..
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~--~e~i--------------Qk~l~~vfse~~~~ 493 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSS--LEKI--------------QKFLNNVFSEALWY 493 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchh--HHHH--------------HHHHHHHHHHHHhh
Confidence 45688999999999999999998543 4555556677766432111 1110 11222334455677
Q ss_pred cceEEEecCCc
Q 040015 280 KKFLLVLDDVW 290 (1399)
Q Consensus 280 ~r~LlvlDdv~ 290 (1399)
.+-+|||||++
T Consensus 494 ~PSiIvLDdld 504 (952)
T KOG0735|consen 494 APSIIVLDDLD 504 (952)
T ss_pred CCcEEEEcchh
Confidence 88999999984
No 339
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.08 E-value=0.3 Score=54.68 Aligned_cols=53 Identities=17% Similarity=0.108 Sum_probs=36.8
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHHHHc
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTILKSV 255 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 255 (1399)
..++.|.|.+|+||||++.+++.+.. ..+=..++|++... +..++...+...+
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~-~~~g~~vl~iS~E~--~~~~~~~r~~~~~ 82 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLI-TQHGVRVGTISLEE--PVVRTARRLLGQY 82 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH-HhcCceEEEEEccc--CHHHHHHHHHHHH
Confidence 45888999999999999999876422 12124578888766 3455666665543
No 340
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=94.08 E-value=0.95 Score=50.57 Aligned_cols=156 Identities=5% Similarity=0.003 Sum_probs=87.1
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCc---c-----ccccccceEEEEe-CCccCHHHHHHHHHHHccCCCCCCCcchHHHH
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDS---R-----VDGRFDLKVWVCV-SDQFDVLRVTTTILKSVTSKPADVDDDLNLLQ 270 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~---~-----~~~~f~~~~wv~~-~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l~ 270 (1399)
..+..++|..|.||+++|..+.+.. . ...|=+-..++.. +....++++ +++.+.+....-
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~I-r~l~~~~~~~~~---------- 86 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEF-LSAINKLYFSSF---------- 86 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHH-HHHHHHhccCCc----------
Confidence 4566799999999999999987632 0 0111112222221 111111111 122222211100
Q ss_pred HHHHHHhcCcceEEEecCCcCCCcchhhhhhcccCCCCCCcEEEEEc-CChhhHHh-cCccceEeCCCCCccchHHHHHH
Q 040015 271 VCLREKLAGKKFLLVLDDVWSRRNDDWDLICSPLKAGARGSKIIITT-RDSSIAAS-MGTVAAHHLECLAFEDCSSIFMN 348 (1399)
Q Consensus 271 ~~l~~~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTt-R~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~ 348 (1399)
-.+++=++|+|++..-.....+.+...+.....++.+|++| ....+... .+....+++.++++++..+.+..
T Consensus 87 ------~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~~ 160 (299)
T PRK07132 87 ------VQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLLS 160 (299)
T ss_pred ------ccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHHH
Confidence 01466688889986655556777777777666677777655 44444443 23457899999999988877765
Q ss_pred hhhcCCCCCCCccHHHHHHHHHHHccCchhHHHH
Q 040015 349 QAFENRNTGISPDLETIGAEIVNKCEGLLLAVKR 382 (1399)
Q Consensus 349 ~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~ 382 (1399)
.. .+ ++.++.++...+|.=-|+..
T Consensus 161 ~~-------~~---~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 161 KN-------KE---KEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred cC-------CC---hhHHHHHHHHcCCHHHHHHH
Confidence 31 11 12355666666763345544
No 341
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=94.06 E-value=0.17 Score=61.91 Aligned_cols=135 Identities=16% Similarity=0.083 Sum_probs=74.4
Q ss_pred CCccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHH
Q 040015 171 ESCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTT 250 (1399)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 250 (1399)
...++|+...++++.+.+..-. ....-|.|+|..|+|||++|+.+++.... .-...+.|++....+ ..+-.+
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a-----~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r--~~~p~v~v~c~~~~~-~~~e~~ 257 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVA-----ASDLNVLILGETGVGKELVARAIHAASPR--ADKPLVYLNCAALPE-SLAESE 257 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHh-----CCCCcEEEECCCCccHHHHHHHHHHhCCc--CCCCeEEEEcccCCh-HHHHHH
Confidence 3568999999999988887643 22346679999999999999999874321 112345566655432 111112
Q ss_pred HHHHccCCCCCCCcchHHHHHHHHHHhcCcceEEEecCCcCCCcchhhhhhcccCCCC-----------CCcEEEEEcCC
Q 040015 251 ILKSVTSKPADVDDDLNLLQVCLREKLAGKKFLLVLDDVWSRRNDDWDLICSPLKAGA-----------RGSKIIITTRD 319 (1399)
Q Consensus 251 i~~~l~~~~~~~~~~~~~l~~~l~~~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtR~ 319 (1399)
+.....+....... .....+. ....-.|+||+|..-..+....+...+..+. ...|||.||..
T Consensus 258 lfG~~~g~~~ga~~---~~~g~~~---~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~ 331 (509)
T PRK05022 258 LFGHVKGAFTGAIS---NRSGKFE---LADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNR 331 (509)
T ss_pred hcCccccccCCCcc---cCCcchh---hcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCC
Confidence 21111110000000 0000011 1123357899997765556666666554321 24588888864
No 342
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=94.04 E-value=0.23 Score=54.08 Aligned_cols=49 Identities=18% Similarity=0.268 Sum_probs=34.9
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHH
Q 040015 198 NNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTT 250 (1399)
Q Consensus 198 ~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 250 (1399)
....++.|.|.+|+|||++|.++.... . ..-..++||+... ++.++.+.
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~~-~-~~ge~~lyvs~ee--~~~~i~~~ 67 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWNG-L-QMGEPGIYVALEE--HPVQVRRN 67 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHH-H-HcCCcEEEEEeeC--CHHHHHHH
Confidence 346799999999999999999876531 1 2235688888765 44455554
No 343
>PRK10867 signal recognition particle protein; Provisional
Probab=94.00 E-value=0.17 Score=59.32 Aligned_cols=24 Identities=38% Similarity=0.522 Sum_probs=21.0
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhc
Q 040015 199 NVSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 199 ~~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
...+|.++|.+|+||||.|..++.
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 367999999999999998888876
No 344
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.00 E-value=0.29 Score=50.33 Aligned_cols=121 Identities=16% Similarity=0.146 Sum_probs=61.4
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHHHHcc--CCCCCC-----------Ccch
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTILKSVT--SKPADV-----------DDDL 266 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~--~~~~~~-----------~~~~ 266 (1399)
..+++|+|..|.|||||++.++.... .....+++.-....... ..+...+. .+.... -+.-
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G 99 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLLK---PDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSGG 99 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCHH
Confidence 45899999999999999999987421 22333333211000000 01111110 000000 0101
Q ss_pred HHHHHHHHHHhcCcceEEEecCCcCC-CcchhhhhhcccCCC-CCCcEEEEEcCChhhHHhc
Q 040015 267 NLLQVCLREKLAGKKFLLVLDDVWSR-RNDDWDLICSPLKAG-ARGSKIIITTRDSSIAASM 326 (1399)
Q Consensus 267 ~~l~~~l~~~l~~~r~LlvlDdv~~~-~~~~~~~l~~~l~~~-~~gs~ilvTtR~~~v~~~~ 326 (1399)
+...-.+...+..++=++++|+--.. +....+.+...+... ..|..||++|.+......+
T Consensus 100 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~ 161 (173)
T cd03230 100 MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERL 161 (173)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHh
Confidence 22222456666778889999997432 222233333333321 2367799999887766543
No 345
>PRK06547 hypothetical protein; Provisional
Probab=93.96 E-value=0.066 Score=54.53 Aligned_cols=25 Identities=36% Similarity=0.379 Sum_probs=22.6
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhcC
Q 040015 199 NVSVVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 199 ~~~vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
...+|+|.|.+|+||||+|+.+.+.
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999874
No 346
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.94 E-value=0.16 Score=52.47 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCchHHHHHHHHhc
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
..+++|+|..|.|||||++.++.
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G 48 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAG 48 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45999999999999999999986
No 347
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=93.93 E-value=0.17 Score=54.18 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=20.0
Q ss_pred EEEEEcCCCchHHHHHHHHhcC
Q 040015 202 VVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 202 vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
+|+|.|..|+||||+|+.+...
T Consensus 1 IigI~G~sGSGKTTla~~L~~~ 22 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQAL 22 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHH
Confidence 5899999999999999999873
No 348
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.92 E-value=0.12 Score=59.38 Aligned_cols=24 Identities=38% Similarity=0.336 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhc
Q 040015 199 NVSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 199 ~~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
...++.++|++|+||||+|.+++.
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999986
No 349
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.92 E-value=0.22 Score=56.42 Aligned_cols=91 Identities=11% Similarity=0.047 Sum_probs=54.3
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCcc-CHHHHHHHHHHHccCCCCCCCcchHHHHHHHHHH
Q 040015 198 NNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQF-DVLRVTTTILKSVTSKPADVDDDLNLLQVCLREK 276 (1399)
Q Consensus 198 ~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~ 276 (1399)
...+++.|+|+.|+||||++..++.....++ ..+.+|++.... ...+-++...+.++.+..... +..++...+...
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g--~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~-dp~dL~~al~~l 280 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQN--RTVGFITTDTFRSGAVEQFQGYADKLDVELIVAT-SPAELEEAVQYM 280 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEeCCccCccHHHHHHHHhhcCCCCEEecC-CHHHHHHHHHHH
Confidence 3478999999999999999999886422222 346666664322 223445555665554332222 255666555544
Q ss_pred hc-CcceEEEecCCcC
Q 040015 277 LA-GKKFLLVLDDVWS 291 (1399)
Q Consensus 277 l~-~~r~LlvlDdv~~ 291 (1399)
-. +..=+|++|-.-.
T Consensus 281 ~~~~~~D~VLIDTAGr 296 (407)
T PRK12726 281 TYVNCVDHILIDTVGR 296 (407)
T ss_pred HhcCCCCEEEEECCCC
Confidence 31 3446788887744
No 350
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=93.92 E-value=0.07 Score=65.74 Aligned_cols=76 Identities=14% Similarity=0.059 Sum_probs=55.9
Q ss_pred CccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHH
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTI 251 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 251 (1399)
.+++|.++.++.+...+... +.+.++|.+|+||||+|+.+.+.. ...+++..+|..-+ ..+....++.+
T Consensus 31 ~~vigq~~a~~~L~~~~~~~---------~~~l~~G~~G~GKttla~~l~~~l-~~~~~~~~~~~~np-~~~~~~~~~~v 99 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQR---------RHVMMIGSPGTGKSMLAKAMAELL-PKEELQDILVYPNP-EDPNNPKIRTV 99 (637)
T ss_pred HHcCChHHHHHHHHHHHHhC---------CeEEEECCCCCcHHHHHHHHHHHc-ChHhHHHheEeeCC-CcchHHHHHHH
Confidence 46899999998888777533 368899999999999999998742 23346778887653 34667777777
Q ss_pred HHHccCC
Q 040015 252 LKSVTSK 258 (1399)
Q Consensus 252 ~~~l~~~ 258 (1399)
..+++.+
T Consensus 100 ~~~~G~~ 106 (637)
T PRK13765 100 PAGKGKQ 106 (637)
T ss_pred HHhcCHH
Confidence 7766543
No 351
>PTZ00301 uridine kinase; Provisional
Probab=93.90 E-value=0.06 Score=56.72 Aligned_cols=23 Identities=26% Similarity=0.524 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCchHHHHHHHHhc
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
..+|+|.|.+|+||||+|+.+.+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 57999999999999999998876
No 352
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=93.84 E-value=0.34 Score=52.90 Aligned_cols=21 Identities=29% Similarity=0.474 Sum_probs=18.9
Q ss_pred EEEEEcCCCchHHHHHHHHhc
Q 040015 202 VVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 202 vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
+..|+|++|+|||+||..++-
T Consensus 3 ~~ll~g~~G~GKS~lal~la~ 23 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLAL 23 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHH
Confidence 567899999999999999975
No 353
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=93.73 E-value=0.19 Score=59.02 Aligned_cols=90 Identities=14% Similarity=0.100 Sum_probs=46.6
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCH--HHHHHHHHHHccCCCCC--CCcchHHHHHHHH
Q 040015 199 NVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDV--LRVTTTILKSVTSKPAD--VDDDLNLLQVCLR 274 (1399)
Q Consensus 199 ~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~--~~~~~~i~~~l~~~~~~--~~~~~~~l~~~l~ 274 (1399)
...++.++|.+|+||||.|..++.....+..+ .++-|++. .+.+ .+-++...++.+.+... ...+...+.....
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~-kV~lV~~D-~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al 175 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGK-KVLLVACD-LYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRAL 175 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCC-eEEEEecc-ccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHH
Confidence 35799999999999999988887632111122 33444443 2322 23344445554433211 1112333433333
Q ss_pred HHhcCcce-EEEecCCc
Q 040015 275 EKLAGKKF-LLVLDDVW 290 (1399)
Q Consensus 275 ~~l~~~r~-LlvlDdv~ 290 (1399)
+....+.| ++|+|-.-
T Consensus 176 ~~~~~~~~DvVIIDTaG 192 (428)
T TIGR00959 176 EYAKENGFDVVIVDTAG 192 (428)
T ss_pred HHHHhcCCCEEEEeCCC
Confidence 33334445 77777764
No 354
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=93.72 E-value=0.12 Score=49.83 Aligned_cols=44 Identities=25% Similarity=0.347 Sum_probs=32.2
Q ss_pred EEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHHHHccCC
Q 040015 202 VVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTILKSVTSK 258 (1399)
Q Consensus 202 vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 258 (1399)
+|.|.|.+|.||||+|+.++++... .| | +.-.++++|+++.+..
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl--~~-----v------saG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGL--KL-----V------SAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCC--ce-----e------eccHHHHHHHHHcCCC
Confidence 6899999999999999999984221 11 1 2235778888887654
No 355
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=93.63 E-value=0.58 Score=58.90 Aligned_cols=158 Identities=16% Similarity=0.209 Sum_probs=79.6
Q ss_pred CccccchhHHHHHHHHHhccCCCC-----CCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHH
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSS-----SSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLR 246 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~-----~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 246 (1399)
.++.|.+..++++.+.+.....+. ...-.+-|.++|++|+|||++|+.+++.. ...| +.++.+.
T Consensus 152 ~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~--~~~f---~~is~~~------ 220 (644)
T PRK10733 152 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA--KVPF---FTISGSD------ 220 (644)
T ss_pred HHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc--CCCE---EEEehHH------
Confidence 356787766665555443211000 01112348899999999999999998732 2233 2222221
Q ss_pred HHHHHHHHccCCCCCCCcchHHHHHHHHHHhcCcceEEEecCCcCCC----------cchhhh----hhcccCC--CCCC
Q 040015 247 VTTTILKSVTSKPADVDDDLNLLQVCLREKLAGKKFLLVLDDVWSRR----------NDDWDL----ICSPLKA--GARG 310 (1399)
Q Consensus 247 ~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~~r~LlvlDdv~~~~----------~~~~~~----l~~~l~~--~~~g 310 (1399)
+. ....+. ....+...+...-...+.+|++|+++.-. ...++. +...+.. ...+
T Consensus 221 ~~----~~~~g~------~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~ 290 (644)
T PRK10733 221 FV----EMFVGV------GASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEG 290 (644)
T ss_pred hH----Hhhhcc------cHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCC
Confidence 11 111000 12233333444444567899999985421 011222 2111211 1234
Q ss_pred cEEEEEcCChhhHHh-c---C-ccceEeCCCCCccchHHHHHHhh
Q 040015 311 SKIIITTRDSSIAAS-M---G-TVAAHHLECLAFEDCSSIFMNQA 350 (1399)
Q Consensus 311 s~ilvTtR~~~v~~~-~---~-~~~~~~l~~L~~~~~~~lf~~~a 350 (1399)
.-||.||..++.... . + -...+.++.-+.++-.+++..+.
T Consensus 291 vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~ 335 (644)
T PRK10733 291 IIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHM 335 (644)
T ss_pred eeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHh
Confidence 456667776553321 1 1 23567777777777777777665
No 356
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.63 E-value=1.6 Score=52.37 Aligned_cols=52 Identities=21% Similarity=0.169 Sum_probs=34.2
Q ss_pred CccccchhHHHHHHHHHhccCCCC------CCCCcEEEEEEcCCCchHHHHHHHHhcC
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSS------SSNNVSVVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~------~~~~~~vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
+++=|-++-+++|.+...-+-.-+ +-...+-|..+|++|.|||++|+++++.
T Consensus 434 ~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne 491 (693)
T KOG0730|consen 434 DDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANE 491 (693)
T ss_pred hhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhh
Confidence 445567776666665543221000 1134567789999999999999999993
No 357
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=93.59 E-value=0.039 Score=51.66 Aligned_cols=27 Identities=33% Similarity=0.520 Sum_probs=18.6
Q ss_pred EEEEcCCCchHHHHHHHHhcCcccccccc
Q 040015 203 VPIVGMGGIGKTTVAQLVYNDSRVDGRFD 231 (1399)
Q Consensus 203 v~I~G~gG~GKTtLa~~v~~~~~~~~~f~ 231 (1399)
|.|+|.+|+||||+|+.++. .....|.
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EE
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCcee
Confidence 57999999999999999998 4556664
No 358
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=93.58 E-value=0.048 Score=45.85 Aligned_cols=22 Identities=36% Similarity=0.595 Sum_probs=19.7
Q ss_pred EEEEEcCCCchHHHHHHHHhcC
Q 040015 202 VVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 202 vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
+|+|.|..|+||||+|+.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999874
No 359
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=93.58 E-value=0.044 Score=53.20 Aligned_cols=21 Identities=38% Similarity=0.572 Sum_probs=19.3
Q ss_pred EEEEcCCCchHHHHHHHHhcC
Q 040015 203 VPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 203 v~I~G~gG~GKTtLa~~v~~~ 223 (1399)
|.|.|+.|+||||+|+.+.+.
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999873
No 360
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=93.57 E-value=0.29 Score=57.13 Aligned_cols=87 Identities=18% Similarity=0.204 Sum_probs=49.2
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHHHHccCCC------CCCCc----chHHH
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTILKSVTSKP------ADVDD----DLNLL 269 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------~~~~~----~~~~l 269 (1399)
...++|+|..|+|||||++.+..... ....++|..-.+..++.+.....+....... .+... .....
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l~~---pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~ 241 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARADA---FDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLT 241 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC---CCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHH
Confidence 45889999999999999999986322 2234455443344455544444443331111 11111 01112
Q ss_pred HHHHHHHh--cCcceEEEecCC
Q 040015 270 QVCLREKL--AGKKFLLVLDDV 289 (1399)
Q Consensus 270 ~~~l~~~l--~~~r~LlvlDdv 289 (1399)
...+.+++ +++.+|+++||+
T Consensus 242 a~~iAEyfrd~G~~Vll~~Dsl 263 (450)
T PRK06002 242 ATAIAEYFRDRGENVLLIVDSV 263 (450)
T ss_pred HHHHHHHHHHcCCCEEEeccch
Confidence 22344444 588999999998
No 361
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=93.55 E-value=2.1 Score=47.94 Aligned_cols=40 Identities=20% Similarity=0.195 Sum_probs=29.8
Q ss_pred cccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhc
Q 040015 174 VYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 174 ~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
++=..+....+..++... +.|.|.|.+|+||||+|+.++.
T Consensus 47 y~f~~~~~~~vl~~l~~~---------~~ilL~G~pGtGKTtla~~lA~ 86 (327)
T TIGR01650 47 YLFDKATTKAICAGFAYD---------RRVMVQGYHGTGKSTHIEQIAA 86 (327)
T ss_pred ccCCHHHHHHHHHHHhcC---------CcEEEEeCCCChHHHHHHHHHH
Confidence 333444556677777433 3588999999999999999987
No 362
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.55 E-value=0.25 Score=52.62 Aligned_cols=63 Identities=19% Similarity=0.168 Sum_probs=36.7
Q ss_pred HHHHhcCcceEEEecCCcCC-CcchhhhhhcccCC-CCCCcEEEEEcCChhhHHhcCccceEeCCCCC
Q 040015 273 LREKLAGKKFLLVLDDVWSR-RNDDWDLICSPLKA-GARGSKIIITTRDSSIAASMGTVAAHHLECLA 338 (1399)
Q Consensus 273 l~~~l~~~r~LlvlDdv~~~-~~~~~~~l~~~l~~-~~~gs~ilvTtR~~~v~~~~~~~~~~~l~~L~ 338 (1399)
+...+..++-++++|+--.. +....+.+...+.. ...|..||++|.+...... ..++.++...
T Consensus 138 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~---~~~~~~~~~~ 202 (207)
T PRK13539 138 LARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG---ARELDLGPFA 202 (207)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc---CcEEeecCcc
Confidence 44555566789999986332 22233344444432 1246678999988765543 5667766543
No 363
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=93.51 E-value=0.16 Score=58.20 Aligned_cols=53 Identities=19% Similarity=0.340 Sum_probs=38.6
Q ss_pred CCccccchhHHHHHHHHHhcc-------CCCCCCCCcEEEEEEcCCCchHHHHHHHHhcC
Q 040015 171 ESCVYGRENDKNAIVELLMVE-------DDSSSSNNVSVVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~-------~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
+..++|.++.++.+..++... .....+...+.|.++|+.|+|||++|+.+...
T Consensus 14 d~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~ 73 (443)
T PRK05201 14 DKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKL 73 (443)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999998888542 00000112367899999999999999999873
No 364
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=93.49 E-value=0.83 Score=49.41 Aligned_cols=96 Identities=17% Similarity=0.152 Sum_probs=64.5
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHHHHccCCCCCCCcchHHHHHHHHHHhcC
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTILKSVTSKPADVDDDLNLLQVCLREKLAG 279 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~ 279 (1399)
.+.+.|+|+.|+|||+-++.+++.. ...+-+..+..+....++..+........... .......+...+++
T Consensus 94 g~l~~vyg~~g~gKt~a~~~y~~s~------p~~~l~~~~p~~~a~~~i~~i~~~~~~~~~~~---~~d~~~~~~~~l~~ 164 (297)
T COG2842 94 GSLVVVYGYAGLGKTQAAKNYAPSN------PNALLIEADPSYTALVLILIICAAAFGATDGT---INDLTERLMIRLRD 164 (297)
T ss_pred CceEEEeccccchhHHHHHhhcccC------ccceeecCChhhHHHHHHHHHHHHHhcccchh---HHHHHHHHHHHHcc
Confidence 4488899999999999999999831 22333456777777666666666555433222 44555556666688
Q ss_pred cceEEEecCCcCCCcchhhhhhccc
Q 040015 280 KKFLLVLDDVWSRRNDDWDLICSPL 304 (1399)
Q Consensus 280 ~r~LlvlDdv~~~~~~~~~~l~~~l 304 (1399)
..-+|+.|+...-....++.+....
T Consensus 165 ~~~~iivDEA~~L~~~ale~lr~i~ 189 (297)
T COG2842 165 TVRLIIVDEADRLPYRALEELRRIH 189 (297)
T ss_pred CcceeeeehhhccChHHHHHHHHHH
Confidence 8889999998665555666655443
No 365
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=93.47 E-value=0.064 Score=57.09 Aligned_cols=26 Identities=38% Similarity=0.528 Sum_probs=23.0
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHhcC
Q 040015 198 NNVSVVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 198 ~~~~vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
+...+|+|+|++|+||||||+.++..
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 34689999999999999999999863
No 366
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=93.44 E-value=0.082 Score=52.15 Aligned_cols=36 Identities=25% Similarity=0.166 Sum_probs=26.2
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEE
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVC 237 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~ 237 (1399)
..||.|.|.+|+||||||+++.+. ....-..+.++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~--L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERR--LFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHH--HHHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEec
Confidence 468999999999999999999983 333334455554
No 367
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=93.43 E-value=0.22 Score=60.12 Aligned_cols=59 Identities=17% Similarity=0.278 Sum_probs=42.7
Q ss_pred ccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEE
Q 040015 173 CVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVC 237 (1399)
Q Consensus 173 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~ 237 (1399)
+++--.+.++++..||...-. .....+++.+.|++|+||||.++.+++. -.|+.+-|.+
T Consensus 20 eLavhkkKv~eV~~wl~~~~~--~~~~~~iLlLtGP~G~GKtttv~~La~e----lg~~v~Ew~n 78 (519)
T PF03215_consen 20 ELAVHKKKVEEVRSWLEEMFS--GSSPKRILLLTGPSGCGKTTTVKVLAKE----LGFEVQEWIN 78 (519)
T ss_pred HhhccHHHHHHHHHHHHHHhc--cCCCcceEEEECCCCCCHHHHHHHHHHH----hCCeeEEecC
Confidence 454456788899999976431 2234679999999999999999999974 2356666754
No 368
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=93.40 E-value=0.3 Score=51.63 Aligned_cols=122 Identities=18% Similarity=0.146 Sum_probs=60.8
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCc--c-cccc--cc--------------c-eEEEEeCCccCHHHHHHHHHHHccCCC
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDS--R-VDGR--FD--------------L-KVWVCVSDQFDVLRVTTTILKSVTSKP 259 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~--~-~~~~--f~--------------~-~~wv~~~~~~~~~~~~~~i~~~l~~~~ 259 (1399)
..+++|+|..|.|||||.+.+.... . ..+. |+ . +.++.-....-......+++...
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~~~---- 101 (200)
T cd03217 26 GEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFLRYV---- 101 (200)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCccHHHHHhhc----
Confidence 4699999999999999999998741 1 1110 10 0 11221110000001111222111
Q ss_pred CCCCcchHHHHHHHHHHhcCcceEEEecCCcCC-CcchhhhhhcccCCC-CCCcEEEEEcCChhhHHh
Q 040015 260 ADVDDDLNLLQVCLREKLAGKKFLLVLDDVWSR-RNDDWDLICSPLKAG-ARGSKIIITTRDSSIAAS 325 (1399)
Q Consensus 260 ~~~~~~~~~l~~~l~~~l~~~r~LlvlDdv~~~-~~~~~~~l~~~l~~~-~~gs~ilvTtR~~~v~~~ 325 (1399)
...-+.-+...-.+...+..++=++++|+--.. +......+...+... ..|..||++|.+...+..
T Consensus 102 ~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~ 169 (200)
T cd03217 102 NEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDY 169 (200)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHH
Confidence 011111223333455666677789999986432 222333333333321 236678889888776654
No 369
>PRK13948 shikimate kinase; Provisional
Probab=93.39 E-value=0.38 Score=49.40 Aligned_cols=24 Identities=25% Similarity=0.392 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhc
Q 040015 199 NVSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 199 ~~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
..+.|.++|+.|+||||+++.+.+
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~ 32 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSR 32 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 356888999999999999999987
No 370
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=93.39 E-value=0.033 Score=56.66 Aligned_cols=42 Identities=21% Similarity=0.222 Sum_probs=30.1
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCcccc-ccccceEEEEeCCccC
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSRVD-GRFDLKVWVCVSDQFD 243 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~~~-~~f~~~~wv~~~~~~~ 243 (1399)
..++.+.|+.|+|||.+|+.+++- .. +.....+-++++.-..
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~--l~~~~~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAEL--LFVGSERPLIRIDMSEYSE 45 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHH--HT-SSCCEEEEEEGGGHCS
T ss_pred EEEEEEECCCCCCHHHHHHHHHHH--hccCCccchHHHhhhcccc
Confidence 568899999999999999999873 33 3344555566554333
No 371
>PRK05480 uridine/cytidine kinase; Provisional
Probab=93.38 E-value=0.063 Score=57.32 Aligned_cols=25 Identities=40% Similarity=0.643 Sum_probs=22.8
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhcC
Q 040015 199 NVSVVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 199 ~~~vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
+..+|+|+|.+|+||||||+.++..
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999999873
No 372
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=93.37 E-value=0.23 Score=57.35 Aligned_cols=83 Identities=19% Similarity=0.209 Sum_probs=49.0
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHHHHccCCCCCC----CcchHHHHHHHH
Q 040015 199 NVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTILKSVTSKPADV----DDDLNLLQVCLR 274 (1399)
Q Consensus 199 ~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~----~~~~~~l~~~l~ 274 (1399)
...++.|.|.+|+|||||+.+++... ...-..++|++..+. ..++ +.-+++++...... ..+.+.+...+.
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~--a~~g~~VlYvs~EEs--~~qi-~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~ 155 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARL--AKRGGKVLYVSGEES--PEQI-KLRADRLGISTENLYLLAETNLEDILASIE 155 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH--HhcCCeEEEEECCcC--HHHH-HHHHHHcCCCcccEEEEccCcHHHHHHHHH
Confidence 35799999999999999999998632 222246778776543 3333 22344554332211 112444444432
Q ss_pred HHhcCcceEEEecCC
Q 040015 275 EKLAGKKFLLVLDDV 289 (1399)
Q Consensus 275 ~~l~~~r~LlvlDdv 289 (1399)
..+.-++|+|.+
T Consensus 156 ---~~~~~lVVIDSI 167 (372)
T cd01121 156 ---ELKPDLVIIDSI 167 (372)
T ss_pred ---hcCCcEEEEcch
Confidence 235567888887
No 373
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=93.32 E-value=0.15 Score=56.87 Aligned_cols=86 Identities=19% Similarity=0.131 Sum_probs=52.7
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHHHHccCCCCC----CCcchHHHHHHH
Q 040015 198 NNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTILKSVTSKPAD----VDDDLNLLQVCL 273 (1399)
Q Consensus 198 ~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~----~~~~~~~l~~~l 273 (1399)
+..+++-|+|..|+||||||..+... .+..-..++||+..+.+++. .+++++.+.+. ..+..++....+
T Consensus 51 p~G~ivEi~G~~ssGKttLaL~~ia~--~q~~g~~~a~ID~e~~ld~~-----~a~~lGvdl~rllv~~P~~~E~al~~~ 123 (322)
T PF00154_consen 51 PRGRIVEIYGPESSGKTTLALHAIAE--AQKQGGICAFIDAEHALDPE-----YAESLGVDLDRLLVVQPDTGEQALWIA 123 (322)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHH--HHHTT-EEEEEESSS---HH-----HHHHTT--GGGEEEEE-SSHHHHHHHH
T ss_pred ccCceEEEeCCCCCchhhhHHHHHHh--hhcccceeEEecCcccchhh-----HHHhcCccccceEEecCCcHHHHHHHH
Confidence 34679999999999999999999873 33344568999998887764 34445443221 122245555556
Q ss_pred HHHhc-CcceEEEecCCc
Q 040015 274 REKLA-GKKFLLVLDDVW 290 (1399)
Q Consensus 274 ~~~l~-~~r~LlvlDdv~ 290 (1399)
.+.++ +..-++|+|-|-
T Consensus 124 e~lirsg~~~lVVvDSv~ 141 (322)
T PF00154_consen 124 EQLIRSGAVDLVVVDSVA 141 (322)
T ss_dssp HHHHHTTSESEEEEE-CT
T ss_pred HHHhhcccccEEEEecCc
Confidence 66664 345688999883
No 374
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=93.31 E-value=0.11 Score=49.79 Aligned_cols=41 Identities=22% Similarity=0.141 Sum_probs=29.3
Q ss_pred hHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCc
Q 040015 179 NDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDS 224 (1399)
Q Consensus 179 ~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~ 224 (1399)
++.+++.+.|...- ....+|.+.|.-|+||||+++.+++..
T Consensus 6 ~~t~~l~~~l~~~l-----~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 6 KAMDKFGKAFAKPL-----DFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHHhC-----CCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 44555555554321 124589999999999999999999753
No 375
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=93.31 E-value=0.11 Score=57.51 Aligned_cols=95 Identities=24% Similarity=0.380 Sum_probs=48.9
Q ss_pred HHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHHHH-ccCCC
Q 040015 181 KNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTILKS-VTSKP 259 (1399)
Q Consensus 181 ~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~-l~~~~ 259 (1399)
...+++.+.... +-+.++|+.|+|||++++....... ...| ...-++.+...+...+++ +++. +....
T Consensus 22 ~~~ll~~l~~~~--------~pvLl~G~~GtGKT~li~~~l~~l~-~~~~-~~~~~~~s~~Tts~~~q~-~ie~~l~k~~ 90 (272)
T PF12775_consen 22 YSYLLDLLLSNG--------RPVLLVGPSGTGKTSLIQNFLSSLD-SDKY-LVITINFSAQTTSNQLQK-IIESKLEKRR 90 (272)
T ss_dssp HHHHHHHHHHCT--------EEEEEESSTTSSHHHHHHHHHHCST-TCCE-EEEEEES-TTHHHHHHHH-CCCTTECECT
T ss_pred HHHHHHHHHHcC--------CcEEEECCCCCchhHHHHhhhccCC-cccc-ceeEeeccCCCCHHHHHH-HHhhcEEcCC
Confidence 355666665543 4568999999999999999886321 1222 133455555444433332 2221 11110
Q ss_pred CCCCcchHHHHHHHHHHhcCcceEEEecCCcCCCcchh
Q 040015 260 ADVDDDLNLLQVCLREKLAGKKFLLVLDDVWSRRNDDW 297 (1399)
Q Consensus 260 ~~~~~~~~~l~~~l~~~l~~~r~LlvlDdv~~~~~~~~ 297 (1399)
...- .--.+|+.++.+||+--...+.|
T Consensus 91 ~~~~-----------gP~~~k~lv~fiDDlN~p~~d~y 117 (272)
T PF12775_consen 91 GRVY-----------GPPGGKKLVLFIDDLNMPQPDKY 117 (272)
T ss_dssp TEEE-----------EEESSSEEEEEEETTT-S---TT
T ss_pred CCCC-----------CCCCCcEEEEEecccCCCCCCCC
Confidence 0000 00136888999999855444443
No 376
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=93.30 E-value=0.26 Score=57.98 Aligned_cols=57 Identities=16% Similarity=0.140 Sum_probs=35.6
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCH--HHHHHHHHHHccCC
Q 040015 199 NVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDV--LRVTTTILKSVTSK 258 (1399)
Q Consensus 199 ~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~--~~~~~~i~~~l~~~ 258 (1399)
...+|.++|.+|+||||+|..++.... ..-..++.|++. .+.+ .+.++.+.++++.+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~--~~g~kV~lV~~D-~~R~aa~eQL~~la~~~gvp 152 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFK--KKGLKVGLVAAD-TYRPAAYDQLKQLAEKIGVP 152 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH--HcCCeEEEecCC-CCCHHHHHHHHHHHHHcCCc
Confidence 367999999999999999999987432 221234444443 2222 34455566665543
No 377
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=93.26 E-value=0.11 Score=53.26 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=19.9
Q ss_pred EEEEEcCCCchHHHHHHHHhcC
Q 040015 202 VVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 202 vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
.|.|.|.+|+||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999984
No 378
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=93.24 E-value=0.2 Score=50.33 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=19.9
Q ss_pred EEEEEEcCCCchHHHHHHHHhc
Q 040015 201 SVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 201 ~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
+.|.+.|.+|+||||+|++.+.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak 23 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAK 23 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHH
Confidence 4678899999999999999987
No 379
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.17 E-value=0.81 Score=47.40 Aligned_cols=64 Identities=17% Similarity=0.168 Sum_probs=38.7
Q ss_pred HHHHHHHhcCcceEEEecCCcCC-CcchhhhhhcccCC-CCCCcEEEEEcCChhhHHhcCccceEe
Q 040015 270 QVCLREKLAGKKFLLVLDDVWSR-RNDDWDLICSPLKA-GARGSKIIITTRDSSIAASMGTVAAHH 333 (1399)
Q Consensus 270 ~~~l~~~l~~~r~LlvlDdv~~~-~~~~~~~l~~~l~~-~~~gs~ilvTtR~~~v~~~~~~~~~~~ 333 (1399)
...+.+.+--++-+.|||..++- +.+..+.+...+.. ...|+-+++.|..+.++....++.++-
T Consensus 152 R~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhv 217 (251)
T COG0396 152 RNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHV 217 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEE
Confidence 34455555566779999988542 22334333322211 234777888999899998877665544
No 380
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.14 E-value=0.071 Score=56.10 Aligned_cols=119 Identities=18% Similarity=0.173 Sum_probs=60.2
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHHHHccCCCCCCCc------chHHHHHHH
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTILKSVTSKPADVDD------DLNLLQVCL 273 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~------~~~~l~~~l 273 (1399)
.+++.|.|+.|.||||+.+.+....-. .+ ...+|.+.. ....+...|...+......... ...++...+
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~~l-a~--~G~~vpa~~--~~l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il 103 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLAIM-AQ--IGCFVPAEY--ATLPIFNRLLSRLSNDDSMERNLSTFASEMSETAYIL 103 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH-HH--cCCCcchhh--cCccChhheeEecCCccccchhhhHHHHHHHHHHHHH
Confidence 478999999999999999988642111 11 111121111 0112223333333332111000 112221111
Q ss_pred HHHhcCcceEEEecCCcCCC-cch----hhhhhcccCCCCCCcEEEEEcCChhhHHhcC
Q 040015 274 REKLAGKKFLLVLDDVWSRR-NDD----WDLICSPLKAGARGSKIIITTRDSSIAASMG 327 (1399)
Q Consensus 274 ~~~l~~~r~LlvlDdv~~~~-~~~----~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~ 327 (1399)
. +..++-|+++|....-. ..+ ...+...+.. .|+.+|++|.+.+++..+.
T Consensus 104 ~--~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 104 D--YADGDSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIAAILG 158 (204)
T ss_pred H--hcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHHHhh
Confidence 1 23567899999974321 111 1122223322 3789999999999887665
No 381
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=93.13 E-value=0.06 Score=54.81 Aligned_cols=24 Identities=42% Similarity=0.530 Sum_probs=22.0
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcC
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
..+|+|-||-|+||||||+..+++
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~ 27 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEH 27 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHH
Confidence 468999999999999999999984
No 382
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=93.11 E-value=0.46 Score=51.58 Aligned_cols=91 Identities=16% Similarity=0.206 Sum_probs=54.9
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCccc--cccccceEEEEeCCcc-CHHHHHHHHHHHccCCCC-----CCCc-ch----
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSRV--DGRFDLKVWVCVSDQF-DVLRVTTTILKSVTSKPA-----DVDD-DL---- 266 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~~--~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~-----~~~~-~~---- 266 (1399)
..-++|.|-.|+|||+|+.++.++... +++-+.++++-+.+.. ...++..++.+.-..+.. ..++ ..
T Consensus 69 GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~ 148 (276)
T cd01135 69 GQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERII 148 (276)
T ss_pred CCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHH
Confidence 456799999999999999999875431 1234678888887654 445555555443211110 1111 01
Q ss_pred -HHHHHHHHHHh--c-CcceEEEecCCc
Q 040015 267 -NLLQVCLREKL--A-GKKFLLVLDDVW 290 (1399)
Q Consensus 267 -~~l~~~l~~~l--~-~~r~LlvlDdv~ 290 (1399)
......+.+++ + ++++|+++||+-
T Consensus 149 a~~~a~aiAEyfrd~~g~~VLl~~D~lt 176 (276)
T cd01135 149 TPRMALTTAEYLAYEKGKHVLVILTDMT 176 (276)
T ss_pred HHHHHHHHHHHHHhccCCeEEEEEcChh
Confidence 11223355555 3 789999999983
No 383
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=93.11 E-value=0.21 Score=52.62 Aligned_cols=86 Identities=22% Similarity=0.348 Sum_probs=50.4
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCc-cCHHHHHHHHHHHccCCC-----CCCCcc-hH-----
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQ-FDVLRVTTTILKSVTSKP-----ADVDDD-LN----- 267 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~-----~~~~~~-~~----- 267 (1399)
..-++|.|.+|+|||+|+.++.++.. -+.++++.+++. ..+.++.+++...-..+. ...++. ..
T Consensus 15 Gqr~~I~g~~g~GKt~Ll~~i~~~~~----~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~ 90 (215)
T PF00006_consen 15 GQRIGIFGGAGVGKTVLLQEIANNQD----ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAP 90 (215)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHCT----TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHH
T ss_pred CCEEEEEcCcccccchhhHHHHhccc----ccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhh
Confidence 35678999999999999999998532 234477777654 345555555543311111 001110 11
Q ss_pred HHHHHHHHHh--cCcceEEEecCC
Q 040015 268 LLQVCLREKL--AGKKFLLVLDDV 289 (1399)
Q Consensus 268 ~l~~~l~~~l--~~~r~LlvlDdv 289 (1399)
...-.+.+++ +++.+|+++||+
T Consensus 91 ~~a~t~AEyfrd~G~dVlli~Dsl 114 (215)
T PF00006_consen 91 YTALTIAEYFRDQGKDVLLIIDSL 114 (215)
T ss_dssp HHHHHHHHHHHHTTSEEEEEEETH
T ss_pred ccchhhhHHHhhcCCceeehhhhh
Confidence 1112233333 689999999998
No 384
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=93.08 E-value=0.14 Score=52.87 Aligned_cols=22 Identities=50% Similarity=0.607 Sum_probs=20.1
Q ss_pred EEEEEcCCCchHHHHHHHHhcC
Q 040015 202 VVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 202 vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
+|+|.|..|+||||+|+.+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~ 22 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQ 22 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999873
No 385
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=93.06 E-value=0.12 Score=57.68 Aligned_cols=51 Identities=22% Similarity=0.354 Sum_probs=43.8
Q ss_pred CCccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhc
Q 040015 171 ESCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
+..|+|.++.++++++.+.... ...+..-+|+.++|+.|.||||||..+.+
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA-~g~~~~krIl~L~GPvg~GKSsl~~~Lk~ 110 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAA-QGLEERKRILLLLGPVGGGKSSLAELLKR 110 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHH-hccCccceEEEEECCCCCCHHHHHHHHHH
Confidence 4579999999999999998764 22456689999999999999999999986
No 386
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=93.04 E-value=0.91 Score=44.44 Aligned_cols=128 Identities=21% Similarity=0.231 Sum_probs=75.5
Q ss_pred EEEEEEcCCCchHHHHHHHHhcCc-------------------cccccc--cceEEEE--------------e------C
Q 040015 201 SVVPIVGMGGIGKTTVAQLVYNDS-------------------RVDGRF--DLKVWVC--------------V------S 239 (1399)
Q Consensus 201 ~vv~I~G~gG~GKTtLa~~v~~~~-------------------~~~~~f--~~~~wv~--------------~------~ 239 (1399)
..|+|+|+.|.||+||..-.+--. .-+..| ..+.+|- | .
T Consensus 37 e~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ 116 (228)
T COG4181 37 ETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELR 116 (228)
T ss_pred ceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccchhhhhccchhhhc
Confidence 478999999999999987775310 001112 1122221 0 1
Q ss_pred C--ccCHHHHHHHHHHHccCCCC-----CCCcchHHHHHHHHHHhcCcceEEEecCCc----CCCcchhhhhhcccCCCC
Q 040015 240 D--QFDVLRVTTTILKSVTSKPA-----DVDDDLNLLQVCLREKLAGKKFLLVLDDVW----SRRNDDWDLICSPLKAGA 308 (1399)
Q Consensus 240 ~--~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~l~~~l~~~l~~~r~LlvlDdv~----~~~~~~~~~l~~~l~~~~ 308 (1399)
. ..+.....++.+++++.... ..-+.-++..-.|.+.+..++-+++-|.-- ....+...++...+ ...
T Consensus 117 ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~l-nre 195 (228)
T COG4181 117 GESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFAL-NRE 195 (228)
T ss_pred CCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHH-hhh
Confidence 1 33456667788888776432 122224455556778888888888888642 11112223333332 234
Q ss_pred CCcEEEEEcCChhhHHhcCcc
Q 040015 309 RGSKIIITTRDSSIAASMGTV 329 (1399)
Q Consensus 309 ~gs~ilvTtR~~~v~~~~~~~ 329 (1399)
.|+..++.|.++.+|..|...
T Consensus 196 ~G~TlVlVTHD~~LA~Rc~R~ 216 (228)
T COG4181 196 RGTTLVLVTHDPQLAARCDRQ 216 (228)
T ss_pred cCceEEEEeCCHHHHHhhhhe
Confidence 688899999999999887643
No 387
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=93.03 E-value=0.35 Score=50.25 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcC
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
..+++|+|..|.|||||++.++.-
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~ 49 (182)
T cd03215 26 GEIVGIAGLVGNGQTELAEALFGL 49 (182)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999863
No 388
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=93.02 E-value=0.14 Score=54.31 Aligned_cols=60 Identities=22% Similarity=0.272 Sum_probs=35.8
Q ss_pred HHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCH
Q 040015 180 DKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDV 244 (1399)
Q Consensus 180 ~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 244 (1399)
+..++++.+.... ++..+|+|.|++|+|||||..++....+.+++=-.++=|+=|.+++-
T Consensus 14 ~~~~ll~~l~~~~-----g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tG 73 (266)
T PF03308_consen 14 EARELLKRLYPHT-----GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTG 73 (266)
T ss_dssp HHHHHHHHHGGGT-----T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC-
T ss_pred HHHHHHHHHHhhc-----CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCC
Confidence 4556666666543 35789999999999999999998874333333233333443444443
No 389
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=92.99 E-value=0.072 Score=52.85 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=19.4
Q ss_pred EEEEEcCCCchHHHHHHHHhc
Q 040015 202 VVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 202 vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
||.+.|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 678999999999999999985
No 390
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=92.97 E-value=0.29 Score=53.62 Aligned_cols=55 Identities=27% Similarity=0.325 Sum_probs=41.4
Q ss_pred CCccccchhHHHH---HHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccc
Q 040015 171 ESCVYGRENDKNA---IVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRF 230 (1399)
Q Consensus 171 ~~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f 230 (1399)
...+||..+..+. |++++.... -..+.|.|+|++|.|||+||..+.+..-..-+|
T Consensus 38 ~dG~VGQ~~AReAaGvIv~mik~gk-----~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF 95 (450)
T COG1224 38 GDGLVGQEEAREAAGVIVKMIKQGK-----MAGRGILIVGPPGTGKTALAMGIARELGEDVPF 95 (450)
T ss_pred CCcccchHHHHHhhhHHHHHHHhCc-----ccccEEEEECCCCCcHHHHHHHHHHHhCCCCCc
Confidence 4568998766654 777776553 346889999999999999999999854444456
No 391
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=92.89 E-value=0.6 Score=57.38 Aligned_cols=133 Identities=17% Similarity=0.121 Sum_probs=74.8
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHHHHccCCCCCCCcchHHHHHHHHHHh
Q 040015 198 NNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTILKSVTSKPADVDDDLNLLQVCLREKL 277 (1399)
Q Consensus 198 ~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l 277 (1399)
...+.+.++|++|.|||.||+++++ ..+.+| +.+... . ++.... .+....+........
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~--~~~~~f-----i~v~~~----~----l~sk~v------Gesek~ir~~F~~A~ 332 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVAL--ESRSRF-----ISVKGS----E----LLSKWV------GESEKNIRELFEKAR 332 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHh--hCCCeE-----EEeeCH----H----Hhcccc------chHHHHHHHHHHHHH
Confidence 3456889999999999999999998 333444 222221 1 111111 111333344444444
Q ss_pred cCcceEEEecCCcCCC-----c------chhhhhhcccCCC--CCCcEEEEEcCChhhHHhc-----CccceEeCCCCCc
Q 040015 278 AGKKFLLVLDDVWSRR-----N------DDWDLICSPLKAG--ARGSKIIITTRDSSIAASM-----GTVAAHHLECLAF 339 (1399)
Q Consensus 278 ~~~r~LlvlDdv~~~~-----~------~~~~~l~~~l~~~--~~gs~ilvTtR~~~v~~~~-----~~~~~~~l~~L~~ 339 (1399)
+..+..|.+|.++.-. . .....+...+... ..+..||-||-.+...... .-...+.+.+-+.
T Consensus 333 ~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~ 412 (494)
T COG0464 333 KLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDL 412 (494)
T ss_pred cCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCH
Confidence 6788999999984310 0 1122233333222 2333455566544433211 1235788888888
Q ss_pred cchHHHHHHhhh
Q 040015 340 EDCSSIFMNQAF 351 (1399)
Q Consensus 340 ~~~~~lf~~~a~ 351 (1399)
++..+.|+.+.-
T Consensus 413 ~~r~~i~~~~~~ 424 (494)
T COG0464 413 EERLEIFKIHLR 424 (494)
T ss_pred HHHHHHHHHHhc
Confidence 889999988874
No 392
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=92.88 E-value=0.73 Score=49.68 Aligned_cols=24 Identities=29% Similarity=0.374 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcC
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
..+++|+|..|.|||||++.++..
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~l~G~ 53 (221)
T cd03244 30 GEKVGIVGRTGSGKSSLLLALFRL 53 (221)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcC
Confidence 458999999999999999999853
No 393
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.87 E-value=1.4 Score=46.93 Aligned_cols=179 Identities=18% Similarity=0.144 Sum_probs=92.3
Q ss_pred CccccchhHHHHHHHHHhccCC-----CCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHH
Q 040015 172 SCVYGRENDKNAIVELLMVEDD-----SSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLR 246 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~-----~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 246 (1399)
+++-|-+..++.+.+...-+-. .+.....+-|.++|++|.||+-||++|+.... .. |.+||.. +
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn--ST-----FFSvSSS----D 201 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN--ST-----FFSVSSS----D 201 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC--Cc-----eEEeehH----H
Confidence 3467888888888776542210 00123467889999999999999999997432 22 3344432 1
Q ss_pred HHHHHHHHccCCCCCCCcchHHHHHHHHHHh-cCcceEEEecCCcCC-------Ccchhhhhhcc----cC---CCCCCc
Q 040015 247 VTTTILKSVTSKPADVDDDLNLLQVCLREKL-AGKKFLLVLDDVWSR-------RNDDWDLICSP----LK---AGARGS 311 (1399)
Q Consensus 247 ~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l-~~~r~LlvlDdv~~~-------~~~~~~~l~~~----l~---~~~~gs 311 (1399)
+.. ...+. .+.+...+.+.. .+|+.+|.+|.++.. +.+.-..+..- +. ....|.
T Consensus 202 LvS----KWmGE-------SEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gv 270 (439)
T KOG0739|consen 202 LVS----KWMGE-------SEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGV 270 (439)
T ss_pred HHH----HHhcc-------HHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCce
Confidence 222 21111 334444444443 468889999998531 11222222221 11 233455
Q ss_pred EEEEEcCChhhHHhcC---ccceEeCCCCCccchHH-HHHHhhhcCCCCCCCccHHHHHHHHHHHccCch
Q 040015 312 KIIITTRDSSIAASMG---TVAAHHLECLAFEDCSS-IFMNQAFENRNTGISPDLETIGAEIVNKCEGLL 377 (1399)
Q Consensus 312 ~ilvTtR~~~v~~~~~---~~~~~~l~~L~~~~~~~-lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~P 377 (1399)
-|+-.|..+=+....- -.+.|.+ ||++..|.. +|+-+. +... +...+.--++++++..|.-
T Consensus 271 LVLgATNiPw~LDsAIRRRFekRIYI-PLPe~~AR~~MF~lhl-G~tp---~~LT~~d~~eL~~kTeGyS 335 (439)
T KOG0739|consen 271 LVLGATNIPWVLDSAIRRRFEKRIYI-PLPEAHARARMFKLHL-GDTP---HVLTEQDFKELARKTEGYS 335 (439)
T ss_pred EEEecCCCchhHHHHHHHHhhcceec-cCCcHHHhhhhheecc-CCCc---cccchhhHHHHHhhcCCCC
Confidence 5666676554433211 1122332 566666665 444443 2211 2222333556667766654
No 394
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=92.87 E-value=0.25 Score=49.26 Aligned_cols=22 Identities=32% Similarity=0.592 Sum_probs=19.8
Q ss_pred EEEEEcCCCchHHHHHHHHhcC
Q 040015 202 VVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 202 vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
||.|+|.+|+||||+|+.+...
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~ 22 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEK 22 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999999999873
No 395
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.87 E-value=0.073 Score=30.43 Aligned_cols=16 Identities=50% Similarity=0.754 Sum_probs=5.9
Q ss_pred cccEEEecCCCCcccC
Q 040015 588 CLRVLSFSACRITALP 603 (1399)
Q Consensus 588 ~Lr~L~Ls~~~i~~lp 603 (1399)
+|++|+|++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 3455555555544443
No 396
>PTZ00494 tuzin-like protein; Provisional
Probab=92.86 E-value=0.86 Score=51.72 Aligned_cols=167 Identities=13% Similarity=0.154 Sum_probs=104.9
Q ss_pred CCCCccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHH
Q 040015 169 VDESCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVT 248 (1399)
Q Consensus 169 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 248 (1399)
.....+|.|++|-..+...|..-+ ..+.+++.+.|.-|.||++|.+.....+.+ ..++|.+....| .+
T Consensus 368 a~~~~~V~R~~eE~~vRqvL~qld----~aHPRIvV~TG~~GcGKSslcRsAvrkE~~-----paV~VDVRg~ED---tL 435 (664)
T PTZ00494 368 AAEAFEVRREDEEALVRSVLTQMA----PSHPRIVALAGGSGGGRCVPCRRAVRVEGV-----ALVHVDVGGTED---TL 435 (664)
T ss_pred cccccccchhhHHHHHHHHHhhcc----CCCCcEEEEecCCCCCchHHHHHHHHHcCC-----CeEEEEecCCcc---hH
Confidence 345678999999999998887764 357899999999999999999998874332 467788876654 57
Q ss_pred HHHHHHccCCCCCC-CcchHHHHHHHHHH---hcCcceEEEec--CCcCCCcchhhhhhcccCCCCCCcEEEEEcCChhh
Q 040015 249 TTILKSVTSKPADV-DDDLNLLQVCLREK---LAGKKFLLVLD--DVWSRRNDDWDLICSPLKAGARGSKIIITTRDSSI 322 (1399)
Q Consensus 249 ~~i~~~l~~~~~~~-~~~~~~l~~~l~~~---l~~~r~LlvlD--dv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v 322 (1399)
+.+.+.++.+..+. .+-++.+.+..+.. ..++.-+||+- +-.+- ...+++.. .+.....-|+|++----+.+
T Consensus 436 rsVVKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL-~RVYnE~v-aLacDrRlCHvv~EVplESL 513 (664)
T PTZ00494 436 RSVVRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDL-GRVYGEVV-SLVSDCQACHIVLAVPMKAL 513 (664)
T ss_pred HHHHHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcH-HHHHHHHH-HHHccchhheeeeechHhhh
Confidence 88899998876433 22234444433332 34555566653 22110 11222221 23334456777764433332
Q ss_pred HHhc---CccceEeCCCCCccchHHHHHHh
Q 040015 323 AASM---GTVAAHHLECLAFEDCSSIFMNQ 349 (1399)
Q Consensus 323 ~~~~---~~~~~~~l~~L~~~~~~~lf~~~ 349 (1399)
.... ..-.-|.+++++.++|.++-.+.
T Consensus 514 T~~n~~LPRLDFy~VPnFSr~QAf~YtqH~ 543 (664)
T PTZ00494 514 TPLNVSSRRLDFYCIPPFSRRQAFAYAEHT 543 (664)
T ss_pred chhhccCccceeEecCCcCHHHHHHHHhcc
Confidence 2111 12356889999999999887654
No 397
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=92.80 E-value=0.13 Score=55.33 Aligned_cols=63 Identities=22% Similarity=0.242 Sum_probs=43.2
Q ss_pred HHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHH
Q 040015 182 NAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTT 249 (1399)
Q Consensus 182 ~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 249 (1399)
.+++..+.... ++..||+|.|.||+|||||.-.+....+.++|=-.++=|+-|.+++--.++.
T Consensus 38 ~~ll~~l~p~t-----G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLG 100 (323)
T COG1703 38 RELLRALYPRT-----GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILG 100 (323)
T ss_pred HHHHHHHhhcC-----CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccc
Confidence 45555555443 4678999999999999999999887555555545555566666666544443
No 398
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.80 E-value=0.3 Score=49.28 Aligned_cols=120 Identities=20% Similarity=0.203 Sum_probs=61.8
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHHHHccCCCCCCCcchHHHHHHHHHHhcC
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTILKSVTSKPADVDDDLNLLQVCLREKLAG 279 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~ 279 (1399)
..+++|+|..|.|||||++.+.... ......+++......... ..+....+..-.. ... -+...-.+...+..
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~~---~~~~G~i~~~~~~~~~~~--~~~~~~~i~~~~q-lS~-G~~~r~~l~~~l~~ 97 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLL---KPTSGEILIDGKDIAKLP--LEELRRRIGYVPQ-LSG-GQRQRVALARALLL 97 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC---CCCccEEEECCEEcccCC--HHHHHhceEEEee-CCH-HHHHHHHHHHHHhc
Confidence 3689999999999999999998742 223444444322111100 0011111111000 111 22222335555556
Q ss_pred cceEEEecCCcCC-CcchhhhhhcccCCC-CCCcEEEEEcCChhhHHhc
Q 040015 280 KKFLLVLDDVWSR-RNDDWDLICSPLKAG-ARGSKIIITTRDSSIAASM 326 (1399)
Q Consensus 280 ~r~LlvlDdv~~~-~~~~~~~l~~~l~~~-~~gs~ilvTtR~~~v~~~~ 326 (1399)
..-++++|+.-.. +......+...+... ..+..|+++|.+.......
T Consensus 98 ~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~ 146 (157)
T cd00267 98 NPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELA 146 (157)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 6789999997432 122233333333221 1256788888887766654
No 399
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=92.78 E-value=0.71 Score=50.74 Aligned_cols=88 Identities=15% Similarity=0.133 Sum_probs=47.7
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHHHHccCCCCC------CCcchHHHHH
Q 040015 198 NNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTILKSVTSKPAD------VDDDLNLLQV 271 (1399)
Q Consensus 198 ~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~l~~ 271 (1399)
.+..+|.|+|.+|+|||||+..+.+. .+... .++.+ ..+..+..+ .+.+...+.+... .-.+...+..
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~--l~~~~-~~~VI-~gD~~t~~D--a~rI~~~g~pvvqi~tG~~Chl~a~mv~~ 175 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMR--LKDSV-PCAVI-EGDQQTVND--AARIRATGTPAIQVNTGKGCHLDAQMIAD 175 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--hccCC-CEEEE-CCCcCcHHH--HHHHHhcCCcEEEecCCCCCcCcHHHHHH
Confidence 35899999999999999999999873 33333 22332 222222222 1223333222110 0112344555
Q ss_pred HHHHHhcCcceEEEecCCcC
Q 040015 272 CLREKLAGKKFLLVLDDVWS 291 (1399)
Q Consensus 272 ~l~~~l~~~r~LlvlDdv~~ 291 (1399)
.+.......-=++|++++-+
T Consensus 176 Al~~L~~~~~d~liIEnvGn 195 (290)
T PRK10463 176 AAPRLPLDDNGILFIENVGN 195 (290)
T ss_pred HHHHHhhcCCcEEEEECCCC
Confidence 55555444446778899843
No 400
>COG4240 Predicted kinase [General function prediction only]
Probab=92.77 E-value=0.46 Score=48.51 Aligned_cols=84 Identities=18% Similarity=0.162 Sum_probs=57.0
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHHHHcc----CCCCCCCcchHHHHHHH
Q 040015 198 NNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTILKSVT----SKPADVDDDLNLLQVCL 273 (1399)
Q Consensus 198 ~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~----~~~~~~~~~~~~l~~~l 273 (1399)
+..-+++|.|+-|+||||++..+++....++- ..++..+..+-+-...-...++++.. ........+..-....+
T Consensus 48 grPli~gisGpQGSGKStls~~i~~~L~~kg~-ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlglnVL 126 (300)
T COG4240 48 GRPLIVGISGPQGSGKSTLSALIVRLLAAKGL-ERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLNVL 126 (300)
T ss_pred CCceEEEeecCCCCchhhHHHHHHHHHHHhcc-cceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHHHHH
Confidence 34789999999999999999999985433332 46777777666555555556666642 22223334577788888
Q ss_pred HHHhcCcce
Q 040015 274 REKLAGKKF 282 (1399)
Q Consensus 274 ~~~l~~~r~ 282 (1399)
....+++.-
T Consensus 127 nai~~g~~~ 135 (300)
T COG4240 127 NAIARGGPT 135 (300)
T ss_pred HHHhcCCCC
Confidence 888877744
No 401
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=92.72 E-value=0.43 Score=60.92 Aligned_cols=185 Identities=14% Similarity=0.156 Sum_probs=83.0
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHHHHccCCC------CCCCcchHHHHHHH
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTILKSVTSKP------ADVDDDLNLLQVCL 273 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------~~~~~~~~~l~~~l 273 (1399)
.+++.|+|+.|.||||+.+.+....-. .....+|.+...... ..+.++...++... .........+...+
T Consensus 322 ~~~liItGpNg~GKSTlLK~i~~~~l~---aq~G~~Vpa~~~~~~-~~~d~i~~~i~~~~si~~~LStfS~~m~~~~~il 397 (771)
T TIGR01069 322 KRVLAITGPNTGGKTVTLKTLGLLALM---FQSGIPIPANEHSEI-PYFEEIFADIGDEQSIEQNLSTFSGHMKNISAIL 397 (771)
T ss_pred ceEEEEECCCCCCchHHHHHHHHHHHH---HHhCCCccCCccccc-cchhheeeecChHhHHhhhhhHHHHHHHHHHHHH
Confidence 478999999999999999998753100 001111211110000 00111111111100 00000122222222
Q ss_pred HHHhcCcceEEEecCCcCC-Ccchhhhh----hcccCCCCCCcEEEEEcCChhhHHhcCccceEeCCCCCcc-chHHHHH
Q 040015 274 REKLAGKKFLLVLDDVWSR-RNDDWDLI----CSPLKAGARGSKIIITTRDSSIAASMGTVAAHHLECLAFE-DCSSIFM 347 (1399)
Q Consensus 274 ~~~l~~~r~LlvlDdv~~~-~~~~~~~l----~~~l~~~~~gs~ilvTtR~~~v~~~~~~~~~~~l~~L~~~-~~~~lf~ 347 (1399)
.. + +.+-|+++|..-.- +..+...+ ...+. ..|+.+|+||....+.........+.-..+..+ +... |.
T Consensus 398 ~~-~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~~~~d~~~l~-p~ 472 (771)
T TIGR01069 398 SK-T-TENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENASVLFDEETLS-PT 472 (771)
T ss_pred Hh-c-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEeEEEEcCCCCc-eE
Confidence 21 1 47899999998542 11222222 22222 357899999999887554322111111111111 1000 11
Q ss_pred HhhhcCCCCCCCccHHHHHHHHHHHccCchhHHHHHHHHHhcCCChHHHHHHHh
Q 040015 348 NQAFENRNTGISPDLETIGAEIVNKCEGLLLAVKRMGIILRSREDKGEWYDMLN 401 (1399)
Q Consensus 348 ~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~~l~ 401 (1399)
.+... +. +. ...|-+|++++ |+|-.+.--|..+... ...++.++++
T Consensus 473 Ykl~~-G~---~g--~S~a~~iA~~~-Glp~~ii~~A~~~~~~-~~~~~~~li~ 518 (771)
T TIGR01069 473 YKLLK-GI---PG--ESYAFEIAQRY-GIPHFIIEQAKTFYGE-FKEEINVLIE 518 (771)
T ss_pred EEECC-CC---CC--CcHHHHHHHHh-CcCHHHHHHHHHHHHh-hHHHHHHHHH
Confidence 11111 11 11 23467777776 7888877777766544 2334444443
No 402
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=92.70 E-value=0.36 Score=56.06 Aligned_cols=86 Identities=19% Similarity=0.221 Sum_probs=50.5
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccC-HHHHHHHHHHHccCCCC-----CCCc-ch-----H
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFD-VLRVTTTILKSVTSKPA-----DVDD-DL-----N 267 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~-----~~~~-~~-----~ 267 (1399)
...++|+|..|+|||||++.+++.. ..+.++.+-+.+... +.+..++++..-..... ..++ .. .
T Consensus 162 GqrigI~G~sG~GKSTLL~~I~~~~----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~ 237 (444)
T PRK08972 162 GQRMGLFAGSGVGKSVLLGMMTRGT----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGC 237 (444)
T ss_pred CCEEEEECCCCCChhHHHHHhccCC----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHH
Confidence 4678999999999999999998732 224556666655443 34444444333111110 0111 01 1
Q ss_pred HHHHHHHHHh--cCcceEEEecCC
Q 040015 268 LLQVCLREKL--AGKKFLLVLDDV 289 (1399)
Q Consensus 268 ~l~~~l~~~l--~~~r~LlvlDdv 289 (1399)
.....+.+++ +++.+|+++||+
T Consensus 238 ~~A~tiAEyfrd~G~~VLl~~Dsl 261 (444)
T PRK08972 238 ETATTIAEYFRDQGLNVLLLMDSL 261 (444)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcCh
Confidence 1222344554 689999999999
No 403
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.69 E-value=0.0038 Score=63.15 Aligned_cols=88 Identities=17% Similarity=0.207 Sum_probs=78.4
Q ss_pred CcccC-cccCCCCCCcEEeccCCccccccccccCCCCCcEEEccCCCCCCCcChhhccCCCCCEEEccCCcccccCcccc
Q 040015 599 ITALP-DSVGDLKHLRYLDLSRTAIKQLPDSTGNLCNLQSIILLECYSLSKLPTDLGNLTGLRHLRMSGSRLREMPMKMY 677 (1399)
Q Consensus 599 i~~lp-~~i~~L~~L~~L~Ls~n~i~~lP~~i~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~l~~lp~~i~ 677 (1399)
++.+| ..|.....-+.||++.|++..+-..|+.++.|..||++.| .+..+|..++.+..++++++..|..+..|.+++
T Consensus 30 ~s~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~skn-q~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~ 108 (326)
T KOG0473|consen 30 LSEIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKN-QIKFLPKDAKQQRETVNAASHKNNHSQQPKSQK 108 (326)
T ss_pred hcccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHh-hHhhChhhHHHHHHHHHHHhhccchhhCCcccc
Confidence 34454 3566778899999999999999999999999999999998 889999999999999999999999999999999
Q ss_pred CCCCCCccCc
Q 040015 678 KLKNLQTLSH 687 (1399)
Q Consensus 678 ~L~~L~~L~~ 687 (1399)
++++++.++.
T Consensus 109 k~~~~k~~e~ 118 (326)
T KOG0473|consen 109 KEPHPKKNEQ 118 (326)
T ss_pred ccCCcchhhh
Confidence 9999988763
No 404
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=92.69 E-value=0.97 Score=48.37 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcC
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
..+++|+|..|.|||||++.++..
T Consensus 37 Ge~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 37 GEALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 458999999999999999999864
No 405
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=92.68 E-value=0.15 Score=55.95 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=18.2
Q ss_pred EEEEEEcCCCchHHHHHHHHhcC
Q 040015 201 SVVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 201 ~vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
+.|.|.|.+|+||||+|+++...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~ 24 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKY 24 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Confidence 46889999999999999999874
No 406
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=92.67 E-value=1.1 Score=47.78 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCchHHHHHHHHhc
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
..+++|.|..|.|||||++.+..
T Consensus 34 G~~~~i~G~nGsGKSTLl~~l~G 56 (207)
T cd03369 34 GEKIGIVGRTGAGKSTLILALFR 56 (207)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999975
No 407
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=92.65 E-value=0.18 Score=51.98 Aligned_cols=22 Identities=41% Similarity=0.527 Sum_probs=20.1
Q ss_pred EEEEEcCCCchHHHHHHHHhcC
Q 040015 202 VVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 202 vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
+|+|.|.+|+||||+|+.+...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 408
>PRK06762 hypothetical protein; Provisional
Probab=92.65 E-value=0.086 Score=53.90 Aligned_cols=24 Identities=33% Similarity=0.505 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcC
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
..+|.|.|++|+||||+|+.+.+.
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~ 25 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQER 25 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999873
No 409
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=92.62 E-value=0.34 Score=59.42 Aligned_cols=134 Identities=13% Similarity=0.022 Sum_probs=69.8
Q ss_pred CccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHH
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTI 251 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 251 (1399)
..++|....+.++++.+..-. ..-.-|.|+|..|+||+.+|+.+++...- .-..-+.++++...+ ..+..
T Consensus 204 ~~~ig~s~~~~~~~~~~~~~A-----~~~~pvlI~GE~GtGK~~lA~aiH~~s~r--~~~pfv~inca~~~~--~~~e~- 273 (520)
T PRK10820 204 SQIVAVSPKMRQVVEQARKLA-----MLDAPLLITGDTGTGKDLLAYACHLRSPR--GKKPFLALNCASIPD--DVVES- 273 (520)
T ss_pred cceeECCHHHHHHHHHHHHHh-----CCCCCEEEECCCCccHHHHHHHHHHhCCC--CCCCeEEeccccCCH--HHHHH-
Confidence 358999988888887775432 11234679999999999999998763211 112234566655332 22222
Q ss_pred HHHccCCCCCCCcchHHHHHHHHHHh-cCcceEEEecCCcCCCcchhhhhhcccCCCC-----------CCcEEEEEcCC
Q 040015 252 LKSVTSKPADVDDDLNLLQVCLREKL-AGKKFLLVLDDVWSRRNDDWDLICSPLKAGA-----------RGSKIIITTRD 319 (1399)
Q Consensus 252 ~~~l~~~~~~~~~~~~~l~~~l~~~l-~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtR~ 319 (1399)
.+.+............. ...+ ....-.|+||+++.-.......+...+..+. ...|||.||..
T Consensus 274 --elFG~~~~~~~~~~~~~---~g~~e~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~ 348 (520)
T PRK10820 274 --ELFGHAPGAYPNALEGK---KGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQK 348 (520)
T ss_pred --HhcCCCCCCcCCcccCC---CChhhhcCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCC
Confidence 12221110000000000 0011 1223457899997755555555655554321 13478887765
Q ss_pred h
Q 040015 320 S 320 (1399)
Q Consensus 320 ~ 320 (1399)
.
T Consensus 349 ~ 349 (520)
T PRK10820 349 N 349 (520)
T ss_pred C
Confidence 3
No 410
>PRK04328 hypothetical protein; Provisional
Probab=92.62 E-value=0.34 Score=53.09 Aligned_cols=41 Identities=22% Similarity=0.296 Sum_probs=30.9
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCc
Q 040015 199 NVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQ 241 (1399)
Q Consensus 199 ~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 241 (1399)
...++.|.|.+|+|||++|.++.... . ..-..++|++....
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~-~-~~ge~~lyis~ee~ 62 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNG-L-QMGEPGVYVALEEH 62 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH-H-hcCCcEEEEEeeCC
Confidence 46799999999999999999977531 1 22356788887663
No 411
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.61 E-value=0.073 Score=30.43 Aligned_cols=16 Identities=50% Similarity=0.787 Sum_probs=7.3
Q ss_pred CCcEEeccCCcccccc
Q 040015 611 HLRYLDLSRTAIKQLP 626 (1399)
Q Consensus 611 ~L~~L~Ls~n~i~~lP 626 (1399)
+|+.|+|++|+++.+|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 5666666666665554
No 412
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=92.58 E-value=0.27 Score=56.76 Aligned_cols=113 Identities=17% Similarity=0.230 Sum_probs=62.0
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHHHHccCCCCCCCcchHHHHHHHHHHhcC
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTILKSVTSKPADVDDDLNLLQVCLREKLAG 279 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~ 279 (1399)
...+.|.|+.|.||||+++.+.+. +..+....++. +.+.... ..... ..+..+. +...+.......++..++.
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~--i~~~~~~~i~t-iEdp~E~--~~~~~-~~~i~q~-evg~~~~~~~~~l~~~lr~ 194 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDY--INKNAAGHIIT-IEDPIEY--VHRNK-RSLINQR-EVGLDTLSFANALRAALRE 194 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh--hCcCCCCEEEE-EcCChhh--hccCc-cceEEcc-ccCCCCcCHHHHHHHhhcc
Confidence 368999999999999999998863 33334445544 2222111 10000 0000000 0111123355667778888
Q ss_pred cceEEEecCCcCCCcchhhhhhcccCCCCCCcEEEEEcCChhhHH
Q 040015 280 KKFLLVLDDVWSRRNDDWDLICSPLKAGARGSKIIITTRDSSIAA 324 (1399)
Q Consensus 280 ~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~ 324 (1399)
..=.|++|.+.+. +.+..... ....|..|+.|.-...+..
T Consensus 195 ~pd~i~vgEird~--~~~~~~l~---aa~tGh~v~~T~Ha~~~~~ 234 (343)
T TIGR01420 195 DPDVILIGEMRDL--ETVELALT---AAETGHLVFGTLHTNSAAQ 234 (343)
T ss_pred CCCEEEEeCCCCH--HHHHHHHH---HHHcCCcEEEEEcCCCHHH
Confidence 8899999999543 33433222 2234666777777655543
No 413
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.58 E-value=0.45 Score=55.50 Aligned_cols=88 Identities=22% Similarity=0.275 Sum_probs=45.9
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCC-ccCHHHHHHHHHHHccCCCCCCCcchHHHHHHHHHHh
Q 040015 199 NVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSD-QFDVLRVTTTILKSVTSKPADVDDDLNLLQVCLREKL 277 (1399)
Q Consensus 199 ~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l 277 (1399)
...+++++|..|+||||++..++........-+.+.++.... .....+-+....+.++.+.....+ ..++...+.. +
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~-~~dl~~al~~-l 267 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKD-IADLQLMLHE-L 267 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCC-HHHHHHHHHH-h
Confidence 357999999999999999988875311111123344444322 122233344455555544333232 3333333332 3
Q ss_pred cCcceEEEecCC
Q 040015 278 AGKKFLLVLDDV 289 (1399)
Q Consensus 278 ~~~r~LlvlDdv 289 (1399)
.++ -++++|-.
T Consensus 268 ~~~-d~VLIDTa 278 (420)
T PRK14721 268 RGK-HMVLIDTV 278 (420)
T ss_pred cCC-CEEEecCC
Confidence 333 45666765
No 414
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=92.45 E-value=0.22 Score=57.32 Aligned_cols=63 Identities=19% Similarity=0.156 Sum_probs=46.3
Q ss_pred ccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHH
Q 040015 173 CVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTT 249 (1399)
Q Consensus 173 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 249 (1399)
.++|+++.+..+...+.... -+.+.|.+|+|||+||+.++.. .... .++|.+.....+.++..
T Consensus 25 ~~~g~~~~~~~~l~a~~~~~---------~vll~G~PG~gKT~la~~lA~~--l~~~---~~~i~~t~~l~p~d~~G 87 (329)
T COG0714 25 VVVGDEEVIELALLALLAGG---------HVLLEGPPGVGKTLLARALARA--LGLP---FVRIQCTPDLLPSDLLG 87 (329)
T ss_pred eeeccHHHHHHHHHHHHcCC---------CEEEECCCCccHHHHHHHHHHH--hCCC---eEEEecCCCCCHHHhcC
Confidence 48899888888887776553 5779999999999999999983 3323 35666666666655543
No 415
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=92.44 E-value=3.1 Score=50.72 Aligned_cols=152 Identities=16% Similarity=0.133 Sum_probs=83.7
Q ss_pred CccccchhHHHHHHHHHhccC---C--CCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHH
Q 040015 172 SCVYGRENDKNAIVELLMVED---D--SSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLR 246 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~---~--~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 246 (1399)
+++=|-++-+.+|.+-+.-+= + .++-.+..=|.++|++|.|||-+|++|+..-. ..|++|-.+ +
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcs-------L~FlSVKGP----E 740 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECS-------LNFLSVKGP----E 740 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhce-------eeEEeecCH----H
Confidence 457788998999888774310 0 01122244577999999999999999997321 345666443 2
Q ss_pred HHHHHHHHccCCCCCCCcchHHHHHHHHHHhcCcceEEEecCCcCCCc---------chhhhhhc----cc---CC-CCC
Q 040015 247 VTTTILKSVTSKPADVDDDLNLLQVCLREKLAGKKFLLVLDDVWSRRN---------DDWDLICS----PL---KA-GAR 309 (1399)
Q Consensus 247 ~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~~r~LlvlDdv~~~~~---------~~~~~l~~----~l---~~-~~~ 309 (1399)
++ ...-++ ..+.+.+...+.-..++++|.||.++.-.. ..-+.+.+ -+ .+ ...
T Consensus 741 LL----NMYVGq------SE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~ 810 (953)
T KOG0736|consen 741 LL----NMYVGQ------SEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQ 810 (953)
T ss_pred HH----HHHhcc------hHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCC
Confidence 22 211111 134444444445466899999999865321 11122211 11 11 223
Q ss_pred CcEEEEEcCChhhHHhc----C-ccceEeCCCCCccchHH
Q 040015 310 GSKIIITTRDSSIAASM----G-TVAAHHLECLAFEDCSS 344 (1399)
Q Consensus 310 gs~ilvTtR~~~v~~~~----~-~~~~~~l~~L~~~~~~~ 344 (1399)
+-=||-.|..++..... | -++.+.+++=+.+++..
T Consensus 811 ~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~ 850 (953)
T KOG0736|consen 811 DVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKL 850 (953)
T ss_pred ceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHH
Confidence 44466666655554321 1 23566777766655554
No 416
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=92.44 E-value=0.069 Score=57.15 Aligned_cols=176 Identities=13% Similarity=0.115 Sum_probs=80.1
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHHHHccCCCCCC--CcchHHHHHHHHHH
Q 040015 199 NVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTILKSVTSKPADV--DDDLNLLQVCLREK 276 (1399)
Q Consensus 199 ~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~l~~~l~~~ 276 (1399)
..+++.|+|+.|.||||+.+.+....-. +..-.+|.+... ......+++..++...... ......-...+...
T Consensus 29 ~~~~~~l~G~n~~GKstll~~i~~~~~l---a~~g~~vpa~~~--~~~~~~~il~~~~l~d~~~~~lS~~~~e~~~~a~i 103 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYIRQIGVIVLM---AQIGCFVPCDSA--DIPIVDCILARVGASDSQLKGVSTFMAEMLETAAI 103 (222)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHH---HHhCCCcCcccE--EEeccceeEeeeccccchhcCcChHHHHHHHHHHH
Confidence 3579999999999999999887632100 001112222110 0011222233332221110 01111111222233
Q ss_pred h--cCcceEEEecCCcC---CC-c--chhhhhhcccCCCCCCcEEEEEcCChhhHHhcCccce---EeCCCCCcc--chH
Q 040015 277 L--AGKKFLLVLDDVWS---RR-N--DDWDLICSPLKAGARGSKIIITTRDSSIAASMGTVAA---HHLECLAFE--DCS 343 (1399)
Q Consensus 277 l--~~~r~LlvlDdv~~---~~-~--~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~~~~~---~~l~~L~~~--~~~ 343 (1399)
+ ...+-|+++|.... .. . ..|..+ ..+.. ..|+.+|+||-..++...+..... ..+.....+ +..
T Consensus 104 l~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il-~~l~~-~~~~~vlisTH~~el~~~~~~~~~i~~g~~~~~~~~~~~~~ 181 (222)
T cd03285 104 LKSATENSLIIIDELGRGTSTYDGFGLAWAIA-EYIAT-QIKCFCLFATHFHELTALADEVPNVKNLHVTALTDDASRTL 181 (222)
T ss_pred HHhCCCCeEEEEecCcCCCChHHHHHHHHHHH-HHHHh-cCCCeEEEEechHHHHHHhhcCCCeEEEEEEEEEeCCCCcE
Confidence 3 35788999999832 11 0 122221 22322 347789999998777664432211 122111111 111
Q ss_pred HHHHHhhhcCCCCCCCccHHHHHHHHHHHccCchhHHHHHHHHHhc
Q 040015 344 SIFMNQAFENRNTGISPDLETIGAEIVNKCEGLLLAVKRMGIILRS 389 (1399)
Q Consensus 344 ~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~ 389 (1399)
.|..+...+. .. ...|-++++++ |+|-.+..-|..+..
T Consensus 182 -~~~Y~l~~G~----~~--~s~a~~~a~~~-g~p~~vi~~A~~~~~ 219 (222)
T cd03285 182 -TMLYKVEKGA----CD--QSFGIHVAELA-NFPKEVIEMAKQKAL 219 (222)
T ss_pred -eEEEEEeeCC----CC--CcHHHHHHHHh-CcCHHHHHHHHHHHH
Confidence 1111111111 01 23466677666 888888777766543
No 417
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=92.41 E-value=0.52 Score=51.15 Aligned_cols=41 Identities=20% Similarity=0.177 Sum_probs=29.9
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCc
Q 040015 199 NVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQ 241 (1399)
Q Consensus 199 ~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 241 (1399)
...++.|.|.+|+||||+|.+++.... ..-..++|++....
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~--~~g~~~~~is~e~~ 59 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGL--RDGDPVIYVTTEES 59 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHH--hcCCeEEEEEccCC
Confidence 467999999999999999998765321 12346788877543
No 418
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=92.40 E-value=0.84 Score=50.13 Aligned_cols=24 Identities=25% Similarity=0.495 Sum_probs=21.7
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcC
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
..+++|+|..|.|||||++.++.-
T Consensus 30 Ge~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 30 GKILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999864
No 419
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=92.39 E-value=0.16 Score=63.00 Aligned_cols=75 Identities=13% Similarity=0.115 Sum_probs=50.5
Q ss_pred CccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccc-cccceEEEEeCCccCHHHHHHH
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDG-RFDLKVWVCVSDQFDVLRVTTT 250 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~-~f~~~~wv~~~~~~~~~~~~~~ 250 (1399)
++++|.++.++.+...+... +.+.++|++|+||||+|+.+.+. ... .|...+++.-+ ..+...+++.
T Consensus 18 ~~viG~~~a~~~l~~a~~~~---------~~~ll~G~pG~GKT~la~~la~~--l~~~~~~~~~~~~n~-~~~~~~~~~~ 85 (608)
T TIGR00764 18 DQVIGQEEAVEIIKKAAKQK---------RNVLLIGEPGVGKSMLAKAMAEL--LPDEELEDILVYPNP-EDPNMPRIVE 85 (608)
T ss_pred hhccCHHHHHHHHHHHHHcC---------CCEEEECCCCCCHHHHHHHHHHH--cCchhheeEEEEeCC-CCCchHHHHH
Confidence 46899999888888777543 24559999999999999999973 322 33333433222 2345566777
Q ss_pred HHHHccCC
Q 040015 251 ILKSVTSK 258 (1399)
Q Consensus 251 i~~~l~~~ 258 (1399)
++.+++.+
T Consensus 86 v~~~~g~~ 93 (608)
T TIGR00764 86 VPAGEGRE 93 (608)
T ss_pred HHHhhchH
Confidence 77776643
No 420
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=92.39 E-value=0.1 Score=54.69 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhc
Q 040015 199 NVSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 199 ~~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
+.++|.|+|++|+||||+|+.++.
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 367999999999999999999986
No 421
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=92.38 E-value=0.61 Score=46.93 Aligned_cols=119 Identities=16% Similarity=0.031 Sum_probs=60.8
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEe---CCccCHHHHHHHHHHH---ccCCC----CCCCcc---h
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCV---SDQFDVLRVTTTILKS---VTSKP----ADVDDD---L 266 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~---~~~~~~~~~~~~i~~~---l~~~~----~~~~~~---~ 266 (1399)
...|-|++-.|.||||.|..++-.. ....+ .++.+.. .........++...-. .+... .+...+ .
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra-~~~g~-~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~ 82 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRA-LGHGK-KVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIA 82 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHH-HHCCC-eEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHH
Confidence 3577888889999999998887532 11222 2222222 2122333333332000 01100 011111 1
Q ss_pred HHHHHHHHHHhcC-cceEEEecCCcC---CCcchhhhhhcccCCCCCCcEEEEEcCCh
Q 040015 267 NLLQVCLREKLAG-KKFLLVLDDVWS---RRNDDWDLICSPLKAGARGSKIIITTRDS 320 (1399)
Q Consensus 267 ~~l~~~l~~~l~~-~r~LlvlDdv~~---~~~~~~~~l~~~l~~~~~gs~ilvTtR~~ 320 (1399)
.+.....++.+.. +-=++|||.+-. ...-..+.+...+.....+..||+|-|+.
T Consensus 83 ~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 83 KAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 2222334444544 445999999732 11234456666666666778999999985
No 422
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=92.34 E-value=0.47 Score=55.34 Aligned_cols=24 Identities=33% Similarity=0.463 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhc
Q 040015 199 NVSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 199 ~~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
...+|.++|..|+||||+|..++.
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~ 122 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAY 122 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 368999999999999999998876
No 423
>PTZ00185 ATPase alpha subunit; Provisional
Probab=92.34 E-value=0.67 Score=54.38 Aligned_cols=92 Identities=21% Similarity=0.275 Sum_probs=52.6
Q ss_pred cEEEEEEcCCCchHHHHH-HHHhcCcccc-----ccccceEEEEeCCccCHHHHHHHHHHHccC-CCC-----CCCc-ch
Q 040015 200 VSVVPIVGMGGIGKTTVA-QLVYNDSRVD-----GRFDLKVWVCVSDQFDVLRVTTTILKSVTS-KPA-----DVDD-DL 266 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa-~~v~~~~~~~-----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~-~~~-----~~~~-~~ 266 (1399)
..-++|.|..|+|||+|| ..+.+...+. ++-+.++++-+++......-+.+.+++-+. +.. ..++ ..
T Consensus 189 GQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~~ 268 (574)
T PTZ00185 189 GQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPAG 268 (574)
T ss_pred CCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCHH
Confidence 456789999999999997 6667654221 234567888887765433223333333331 110 1111 01
Q ss_pred H-----HHHHHHHHHh--cCcceEEEecCCcC
Q 040015 267 N-----LLQVCLREKL--AGKKFLLVLDDVWS 291 (1399)
Q Consensus 267 ~-----~l~~~l~~~l--~~~r~LlvlDdv~~ 291 (1399)
. .....+.+++ +++.+|+|+||+-.
T Consensus 269 ~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr 300 (574)
T PTZ00185 269 LQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSK 300 (574)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEcCchH
Confidence 1 1122344444 58899999999843
No 424
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=92.33 E-value=0.81 Score=51.91 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=21.7
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcC
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
..+++|+|+.|.|||||.+.+...
T Consensus 28 Gei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 28 GRIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Confidence 469999999999999999999863
No 425
>PRK03839 putative kinase; Provisional
Probab=92.33 E-value=0.091 Score=54.53 Aligned_cols=22 Identities=41% Similarity=0.764 Sum_probs=20.0
Q ss_pred EEEEEcCCCchHHHHHHHHhcC
Q 040015 202 VVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 202 vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
.|.|+|++|+||||+|+.+++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999984
No 426
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.32 E-value=1.1 Score=47.44 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=21.7
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcC
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
..+++|+|..|+|||||++.+..-
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (202)
T cd03233 33 GEMVLVLGRPGSGCSTLLKALANR 56 (202)
T ss_pred CcEEEEECCCCCCHHHHHHHhccc
Confidence 469999999999999999999864
No 427
>PTZ00088 adenylate kinase 1; Provisional
Probab=92.31 E-value=0.13 Score=54.96 Aligned_cols=20 Identities=30% Similarity=0.619 Sum_probs=18.9
Q ss_pred EEEEcCCCchHHHHHHHHhc
Q 040015 203 VPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 203 v~I~G~gG~GKTtLa~~v~~ 222 (1399)
|.|+|++|+||||+|+.+++
T Consensus 9 Ivl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999987
No 428
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=92.29 E-value=0.12 Score=50.10 Aligned_cols=23 Identities=43% Similarity=0.661 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCchHHHHHHHHhc
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
.+++.|+|.+|+||||+.+.+..
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~ 26 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALK 26 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHH
Confidence 58999999999999999988876
No 429
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=92.28 E-value=0.48 Score=52.21 Aligned_cols=40 Identities=23% Similarity=0.302 Sum_probs=30.1
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCC
Q 040015 199 NVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSD 240 (1399)
Q Consensus 199 ~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 240 (1399)
...++.|.|.+|+|||++|.+++.... ..=..+++++...
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a--~~Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQA--SRGNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH--hCCCcEEEEEecC
Confidence 467999999999999999999865321 1224678888764
No 430
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=92.27 E-value=0.55 Score=49.59 Aligned_cols=22 Identities=27% Similarity=0.232 Sum_probs=20.3
Q ss_pred cEEEEEEcCCCchHHHHHHHHh
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVY 221 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~ 221 (1399)
-++++|+|+.|.|||||.+.+.
T Consensus 28 ~~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 28 KRVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred ceEEEEECCCCCChHHHHHHHH
Confidence 3789999999999999999987
No 431
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=92.23 E-value=0.099 Score=54.93 Aligned_cols=22 Identities=23% Similarity=0.191 Sum_probs=20.4
Q ss_pred EEEEEEcCCCchHHHHHHHHhc
Q 040015 201 SVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 201 ~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
++++|+|+.|.||||+.+.+..
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHH
Confidence 7999999999999999999874
No 432
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=92.21 E-value=0.32 Score=51.22 Aligned_cols=42 Identities=24% Similarity=0.294 Sum_probs=28.3
Q ss_pred EEEEEEcCCCchHHHHHHHHhcCccccccc--------cceEEEEeCCcc
Q 040015 201 SVVPIVGMGGIGKTTVAQLVYNDSRVDGRF--------DLKVWVCVSDQF 242 (1399)
Q Consensus 201 ~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f--------~~~~wv~~~~~~ 242 (1399)
.++.|+|.+|+||||++..++........| ..++|++.....
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~ 82 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSE 82 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-H
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCH
Confidence 488899999999999999988643322222 367888876653
No 433
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=92.21 E-value=0.88 Score=45.46 Aligned_cols=22 Identities=27% Similarity=0.617 Sum_probs=19.6
Q ss_pred EEEEEcCCCchHHHHHHHHhcC
Q 040015 202 VVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 202 vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
++.|+|++|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 4678999999999999999873
No 434
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=92.21 E-value=0.72 Score=51.90 Aligned_cols=86 Identities=20% Similarity=0.261 Sum_probs=48.6
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeC-CccCHHHHHHHHHHHccCCC-------CCCCc----chH
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVS-DQFDVLRVTTTILKSVTSKP-------ADVDD----DLN 267 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~~l~~~~-------~~~~~----~~~ 267 (1399)
...++|+|..|+|||||++.+.+... -+..+..-+. +..++.+...+....-.... .+... ...
T Consensus 69 Gqri~I~G~sG~GKTtLl~~Ia~~~~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~ 144 (326)
T cd01136 69 GQRLGIFAGSGVGKSTLLGMIARGTT----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAA 144 (326)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHH
Confidence 45789999999999999999997432 1233333333 33345555555544322111 11111 011
Q ss_pred HHHHHHHHHh--cCcceEEEecCC
Q 040015 268 LLQVCLREKL--AGKKFLLVLDDV 289 (1399)
Q Consensus 268 ~l~~~l~~~l--~~~r~LlvlDdv 289 (1399)
.....+.+++ +++.+|+++||+
T Consensus 145 ~~a~~~AEyfr~~g~~Vll~~Dsl 168 (326)
T cd01136 145 YTATAIAEYFRDQGKDVLLLMDSL 168 (326)
T ss_pred HHHHHHHHHHHHcCCCeEEEeccc
Confidence 1222334444 589999999998
No 435
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=92.20 E-value=0.86 Score=50.19 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=21.8
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcC
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
..+++|+|..|.|||||++.++..
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (248)
T PRK09580 27 GEVHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCC
Confidence 458999999999999999999874
No 436
>PRK00625 shikimate kinase; Provisional
Probab=92.17 E-value=0.095 Score=53.41 Aligned_cols=22 Identities=18% Similarity=0.320 Sum_probs=19.6
Q ss_pred EEEEEcCCCchHHHHHHHHhcC
Q 040015 202 VVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 202 vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
.|.++||+|+||||+++.+.+.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~ 23 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKF 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999873
No 437
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=92.14 E-value=0.42 Score=52.66 Aligned_cols=109 Identities=13% Similarity=0.208 Sum_probs=55.7
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHHHHccCCCCCCCcchHHHHHHHHHHhcC
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTILKSVTSKPADVDDDLNLLQVCLREKLAG 279 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~ 279 (1399)
..+|.|.|..|.||||++..+.+. +.. ....+ +.+.+..... +.. ..++..... . .......++..++.
T Consensus 80 ~GlilisG~tGSGKTT~l~all~~--i~~-~~~~i-itiEdp~E~~--~~~-~~q~~v~~~-~---~~~~~~~l~~~lR~ 148 (264)
T cd01129 80 HGIILVTGPTGSGKTTTLYSALSE--LNT-PEKNI-ITVEDPVEYQ--IPG-INQVQVNEK-A---GLTFARGLRAILRQ 148 (264)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhh--hCC-CCCeE-EEECCCceec--CCC-ceEEEeCCc-C---CcCHHHHHHHHhcc
Confidence 358999999999999999988763 211 11121 2232221110 000 011111110 0 12355667777888
Q ss_pred cceEEEecCCcCCCcchhhhhhcccCCCCCCcEEEEEcCChhhHH
Q 040015 280 KKFLLVLDDVWSRRNDDWDLICSPLKAGARGSKIIITTRDSSIAA 324 (1399)
Q Consensus 280 ~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~ 324 (1399)
..=.|+++++.+. +....+..+ ...|..++-|....++..
T Consensus 149 ~PD~i~vgEiR~~--e~a~~~~~a---a~tGh~v~tTlHa~~~~~ 188 (264)
T cd01129 149 DPDIIMVGEIRDA--ETAEIAVQA---ALTGHLVLSTLHTNDAPG 188 (264)
T ss_pred CCCEEEeccCCCH--HHHHHHHHH---HHcCCcEEEEeccCCHHH
Confidence 8889999999553 222222222 224544555555544433
No 438
>PRK04040 adenylate kinase; Provisional
Probab=92.14 E-value=0.11 Score=54.05 Aligned_cols=23 Identities=39% Similarity=0.619 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCchHHHHHHHHhc
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
..+|+|+|++|+||||+++.+.+
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~ 24 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALE 24 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHH
Confidence 36899999999999999999987
No 439
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=92.10 E-value=0.47 Score=55.70 Aligned_cols=90 Identities=18% Similarity=0.276 Sum_probs=53.2
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCcc-CHHHHHHHHHHHccCCCC-----CCCc-chH----
Q 040015 199 NVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQF-DVLRVTTTILKSVTSKPA-----DVDD-DLN---- 267 (1399)
Q Consensus 199 ~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~-----~~~~-~~~---- 267 (1399)
...-++|.|..|+|||||+.+++.+.... +=+.++++-+.+.. .+.++++++...-..+.. ..++ ...
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~~~-~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a 221 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNIAKE-HGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRV 221 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhc-CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 34578999999999999999987643211 11456677675543 445555555543211110 0111 011
Q ss_pred -HHHHHHHHHh---cCcceEEEecCC
Q 040015 268 -LLQVCLREKL---AGKKFLLVLDDV 289 (1399)
Q Consensus 268 -~l~~~l~~~l---~~~r~LlvlDdv 289 (1399)
.....+.+++ +++.+|+++||+
T Consensus 222 ~~~a~tiAEyfrd~~G~~VLll~Dsl 247 (463)
T PRK09280 222 ALTGLTMAEYFRDVEGQDVLLFIDNI 247 (463)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecch
Confidence 2223355555 679999999999
No 440
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=92.09 E-value=1.4 Score=45.74 Aligned_cols=51 Identities=25% Similarity=0.216 Sum_probs=34.9
Q ss_pred ccccchhHHHHHHHHHhccCCC------CCCCCcEEEEEEcCCCchHHHHHHHHhcC
Q 040015 173 CVYGRENDKNAIVELLMVEDDS------SSSNNVSVVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 173 ~~vGr~~~~~~l~~~L~~~~~~------~~~~~~~vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
++=|.|-.+++|.+...-+-.- -+-...+-|..+|++|.|||-||++|+++
T Consensus 156 diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~ 212 (408)
T KOG0727|consen 156 DIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANH 212 (408)
T ss_pred ccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhc
Confidence 4667788888877766321100 01112456779999999999999999995
No 441
>PRK15453 phosphoribulokinase; Provisional
Probab=92.05 E-value=0.68 Score=50.33 Aligned_cols=24 Identities=25% Similarity=0.465 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhc
Q 040015 199 NVSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 199 ~~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
...+|+|.|.+|+||||+|+.+.+
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~ 27 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEK 27 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999885
No 442
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=92.03 E-value=0.25 Score=54.74 Aligned_cols=42 Identities=26% Similarity=0.218 Sum_probs=35.2
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCc
Q 040015 198 NNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQ 241 (1399)
Q Consensus 198 ~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 241 (1399)
...+++.|+|.+|+|||++|.++.. +...+...++||+..+.
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~--~~~~~ge~vlyvs~~e~ 62 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLY--EGAREGEPVLYVSTEES 62 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHH--HHHhcCCcEEEEEecCC
Confidence 3578999999999999999999988 34455788999998764
No 443
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=92.02 E-value=0.081 Score=49.21 Aligned_cols=21 Identities=43% Similarity=0.572 Sum_probs=18.7
Q ss_pred EEEEcCCCchHHHHHHHHhcC
Q 040015 203 VPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 203 v~I~G~gG~GKTtLa~~v~~~ 223 (1399)
|.|+|.+|+|||++|+.++.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999998873
No 444
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=91.97 E-value=0.19 Score=52.60 Aligned_cols=224 Identities=17% Similarity=0.152 Sum_probs=105.9
Q ss_pred CCCCcceeeecccCCcccccc---cccccCCccceeeeccchhh---hhhhhh-----hcccccccccEEEeecCCCccc
Q 040015 1037 GHRSLTYMRICQISKLDCLVE---GYFQHFTALEELQISHLAEL---MTLSNK-----IGLRSLLSLQRLEISECPYFKE 1105 (1399)
Q Consensus 1037 ~~~~L~~L~l~~~~~~~~~~~---~~~~~l~~L~~L~l~~~~~l---~~~~~~-----~~~~~l~~L~~L~L~~~~~~~~ 1105 (1399)
.+..++.++|++|.+-+.... ..+.+-.+|+..++++-..- ..++.. ..+-.||.|+..+||+|-....
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 367778888888875443322 23344556666666543210 011111 1233677788888887765544
Q ss_pred ch----hhhhCCCCccEEEEecCCCCcccCCCCCCCCcceEEEcCCCccccchhhhccccccCcccCCcceEEecCCCCC
Q 040015 1106 LP----EKFYELSTLKVLRISNCPSLVAFPEMGLPSTLVGLEIRSCEALQFLPEKMMHESQKNKDAFLLEYLVIEGCPAL 1181 (1399)
Q Consensus 1106 l~----~~~~~l~~L~~L~ls~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l 1181 (1399)
.| +.+++-+.|++|.+++|. +..+.....-..|..| ..+. ...+-|.|+.+.... +++
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~l--a~nK--------------Kaa~kp~Le~vicgr-NRl 169 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHL--AYNK--------------KAADKPKLEVVICGR-NRL 169 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHH--HHHh--------------hhccCCCceEEEecc-chh
Confidence 44 345666777788777753 2222211000111110 0111 112344466555544 344
Q ss_pred CccCcccc------cCCCCeEeeecCCCCCccCccccccccccceeccccCCCCCCceEeecCCCCCccc----CCCCCC
Q 040015 1182 VSLPRDKL------SGTLKVLEIENCGNLQSLPEQMICSSLENLKVAGCLHNLAFLDHLEIDDCPLLQSF----PEPCLP 1251 (1399)
Q Consensus 1182 ~~l~~~~~------~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~~l~~L~~L~l~~~~~~~~~----~~~~~~ 1251 (1399)
.+.+.... ..+|+.+.+..+. ++ |.+.. .|-.+. +..+.+|+.|+|.+|.+...- ......
T Consensus 170 engs~~~~a~~l~sh~~lk~vki~qNg-Ir--pegv~--~L~~~g----l~y~~~LevLDlqDNtft~~gS~~La~al~~ 240 (388)
T COG5238 170 ENGSKELSAALLESHENLKEVKIQQNG-IR--PEGVT--MLAFLG----LFYSHSLEVLDLQDNTFTLEGSRYLADALCE 240 (388)
T ss_pred ccCcHHHHHHHHHhhcCceeEEeeecC-cC--cchhH--HHHHHH----HHHhCcceeeeccccchhhhhHHHHHHHhcc
Confidence 43332111 1267777776632 22 11110 000000 345677777777777654322 123334
Q ss_pred CCCccceecccccCCccCcc----cc--ccCCCcceEeecCC
Q 040015 1252 TSMLRYARISNCQNLKFLPN----GM--YILTSLQEFSIHGC 1287 (1399)
Q Consensus 1252 ~~~L~~L~l~~c~~l~~lp~----~~--~~l~~L~~L~l~~c 1287 (1399)
++.|+.|.+.+|-....-.. .+ ...|+|+.|-..++
T Consensus 241 W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yn 282 (388)
T COG5238 241 WNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYN 282 (388)
T ss_pred cchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchh
Confidence 56678888877754332111 11 13566666666553
No 445
>PRK08149 ATP synthase SpaL; Validated
Probab=91.97 E-value=0.72 Score=53.87 Aligned_cols=86 Identities=20% Similarity=0.315 Sum_probs=50.0
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCC-ccCHHHHHHHHHHHccCCC-------CCCCc----chH
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSD-QFDVLRVTTTILKSVTSKP-------ADVDD----DLN 267 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~-------~~~~~----~~~ 267 (1399)
...++|+|..|+|||||+..+++... -+.++...+.. ..++.++..+......... .+... ...
T Consensus 151 Gq~i~I~G~sG~GKTTLl~~i~~~~~----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~ 226 (428)
T PRK08149 151 GQRMGIFASAGCGKTSLMNMLIEHSE----ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAA 226 (428)
T ss_pred CCEEEEECCCCCChhHHHHHHhcCCC----CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHH
Confidence 45889999999999999999987432 23333333433 3345555555555432211 11111 011
Q ss_pred HHHHHHHHHh--cCcceEEEecCC
Q 040015 268 LLQVCLREKL--AGKKFLLVLDDV 289 (1399)
Q Consensus 268 ~l~~~l~~~l--~~~r~LlvlDdv 289 (1399)
.....+.+++ +++++|+++||+
T Consensus 227 ~~a~tiAE~fr~~G~~Vll~~Dsl 250 (428)
T PRK08149 227 LVATTVAEYFRDQGKRVVLFIDSM 250 (428)
T ss_pred HHHHHHHHHHHHcCCCEEEEccch
Confidence 2223344444 589999999999
No 446
>PRK06217 hypothetical protein; Validated
Probab=91.96 E-value=0.22 Score=51.82 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=20.1
Q ss_pred EEEEEcCCCchHHHHHHHHhcC
Q 040015 202 VVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 202 vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
.|.|.|.+|+||||+|+++...
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999974
No 447
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=91.93 E-value=0.55 Score=58.64 Aligned_cols=87 Identities=23% Similarity=0.248 Sum_probs=51.2
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccC--HHHHHHHHHHHccCCCCCCCcchHHHHHHHHHHh
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFD--VLRVTTTILKSVTSKPADVDDDLNLLQVCLREKL 277 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l 277 (1399)
.+|++++|+.|+||||.+.+++...........+..+... .+. ..+-++...+.++.+.....+ ..++...+.+ +
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~D-t~RigA~eQL~~~a~~~gvpv~~~~~-~~~l~~al~~-~ 261 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTD-SFRIGALEQLRIYGRILGVPVHAVKD-AADLRFALAA-L 261 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCc-ccchHHHHHHHHHHHhCCCCccccCC-HHHHHHHHHH-h
Confidence 4799999999999999999988632211111244555443 233 344556666666654433333 5556555553 3
Q ss_pred cCcceEEEecCCc
Q 040015 278 AGKKFLLVLDDVW 290 (1399)
Q Consensus 278 ~~~r~LlvlDdv~ 290 (1399)
+++ =+|++|=.-
T Consensus 262 ~~~-D~VLIDTAG 273 (767)
T PRK14723 262 GDK-HLVLIDTVG 273 (767)
T ss_pred cCC-CEEEEeCCC
Confidence 443 367777764
No 448
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=91.89 E-value=0.66 Score=50.86 Aligned_cols=90 Identities=14% Similarity=0.171 Sum_probs=48.2
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCcc-CHHHHHHHHHHHccCCCCCCCcchHHHHHHHHHHhc
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQF-DVLRVTTTILKSVTSKPADVDDDLNLLQVCLREKLA 278 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~ 278 (1399)
..+++++|.+|+||||++..+.... ...=..+.+++..... ....-++...+.++.+..... +...+...+...-.
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l--~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~-~~~~l~~~l~~l~~ 151 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQF--HGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVR-DEAAMTRALTYFKE 151 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHH--HHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecC-CHHHHHHHHHHHHh
Confidence 4699999999999999999887632 1111235556554321 122222333333332222222 24455554444322
Q ss_pred -CcceEEEecCCcCC
Q 040015 279 -GKKFLLVLDDVWSR 292 (1399)
Q Consensus 279 -~~r~LlvlDdv~~~ 292 (1399)
++.=++++|..-..
T Consensus 152 ~~~~D~ViIDt~Gr~ 166 (270)
T PRK06731 152 EARVDYILIDTAGKN 166 (270)
T ss_pred cCCCCEEEEECCCCC
Confidence 24567888987443
No 449
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=91.88 E-value=0.65 Score=54.26 Aligned_cols=87 Identities=20% Similarity=0.220 Sum_probs=47.6
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHHHHccCCCC-----CCCc-chH-----H
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTILKSVTSKPA-----DVDD-DLN-----L 268 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~-~~~-----~ 268 (1399)
...++|+|..|+|||||++.+..... ....++...-.+...+.++.++.+..-..+.. ..++ ... .
T Consensus 140 Gq~i~I~G~sG~GKTtLl~~I~~~~~---~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~~ 216 (418)
T TIGR03498 140 GQRLGIFAGSGVGKSTLLSMLARNTD---ADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAAY 216 (418)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCC---CCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHHH
Confidence 45789999999999999999987432 12222222222333344444444333221110 0111 011 1
Q ss_pred HHHHHHHHh--cCcceEEEecCC
Q 040015 269 LQVCLREKL--AGKKFLLVLDDV 289 (1399)
Q Consensus 269 l~~~l~~~l--~~~r~LlvlDdv 289 (1399)
....+.+++ +++.+|+++||+
T Consensus 217 ~a~~iAEyfrd~G~~Vll~~Dsl 239 (418)
T TIGR03498 217 TATAIAEYFRDQGKDVLLLMDSV 239 (418)
T ss_pred HHHHHHHHHHHcCCCEEEeccch
Confidence 222345555 588999999998
No 450
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=91.87 E-value=0.49 Score=56.15 Aligned_cols=88 Identities=17% Similarity=0.177 Sum_probs=46.5
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCC-ccCHHHHHHHHHHHccCCCCCCCcchHHHHHHHHHHhc
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSD-QFDVLRVTTTILKSVTSKPADVDDDLNLLQVCLREKLA 278 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~ 278 (1399)
.+|++++|+.|+||||++.+++.....+..-..+..|.... .....+-++...+.++.......+ ..+....+ ..+.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~-~~Dl~~aL-~~L~ 333 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKD-AADLRLAL-SELR 333 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCC-chhHHHHH-Hhcc
Confidence 47999999999999999999986322221112345555432 122334444455555443322222 12222222 2233
Q ss_pred CcceEEEecCCc
Q 040015 279 GKKFLLVLDDVW 290 (1399)
Q Consensus 279 ~~r~LlvlDdv~ 290 (1399)
++ ..+++|-.-
T Consensus 334 d~-d~VLIDTaG 344 (484)
T PRK06995 334 NK-HIVLIDTIG 344 (484)
T ss_pred CC-CeEEeCCCC
Confidence 43 467777764
No 451
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=91.84 E-value=0.38 Score=61.17 Aligned_cols=130 Identities=18% Similarity=0.152 Sum_probs=70.8
Q ss_pred CccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCcc-ccccccceEEEEeCCccCHHHHHHH
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSR-VDGRFDLKVWVCVSDQFDVLRVTTT 250 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~-~~~~f~~~~wv~~~~~~~~~~~~~~ 250 (1399)
+.++|....+.++.+....-. .... -|.|+|..|+||+++|+.+++... -.+.| +.|++..... ..+..+
T Consensus 325 ~~l~g~s~~~~~~~~~~~~~a----~~~~-pvli~Ge~GtGK~~~A~~ih~~s~r~~~pf---v~vnc~~~~~-~~~~~e 395 (638)
T PRK11388 325 DHMPQDSPQMRRLIHFGRQAA----KSSF-PVLLCGEEGVGKALLAQAIHNESERAAGPY---IAVNCQLYPD-EALAEE 395 (638)
T ss_pred cceEECCHHHHHHHHHHHHHh----CcCC-CEEEECCCCcCHHHHHHHHHHhCCccCCCe---EEEECCCCCh-HHHHHH
Confidence 357899988888888776542 1223 367999999999999999987432 12223 4455544322 222233
Q ss_pred HHHHccCCCCCCCcchHHHHHHHHHHhcCcceEEEecCCcCCCcchhhhhhcccCCCC-----------CCcEEEEEcCC
Q 040015 251 ILKSVTSKPADVDDDLNLLQVCLREKLAGKKFLLVLDDVWSRRNDDWDLICSPLKAGA-----------RGSKIIITTRD 319 (1399)
Q Consensus 251 i~~~l~~~~~~~~~~~~~l~~~l~~~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtR~ 319 (1399)
++............ . .+ -....-.|+||++..-..+....+...+..+. -..|||.||..
T Consensus 396 lfg~~~~~~~~~~~--g----~~---~~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~ 466 (638)
T PRK11388 396 FLGSDRTDSENGRL--S----KF---ELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTA 466 (638)
T ss_pred hcCCCCcCccCCCC--C----ce---eECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccC
Confidence 33222111000000 0 00 01223469999997665556666666554321 13467777654
No 452
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=91.83 E-value=0.57 Score=54.74 Aligned_cols=87 Identities=20% Similarity=0.283 Sum_probs=50.2
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCcc-CHHHHHHHHHHHccCCCC-----CCCc-ch-----
Q 040015 199 NVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQF-DVLRVTTTILKSVTSKPA-----DVDD-DL----- 266 (1399)
Q Consensus 199 ~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~-----~~~~-~~----- 266 (1399)
....++|+|..|+|||||++++++... -+.++++-+.+.. .+.+...+.+..-+.... ..++ ..
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a 232 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQA 232 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHH
Confidence 356889999999999999999997432 2345555565543 333444444333211110 0111 01
Q ss_pred HHHHHHHHHHh--cCcceEEEecCC
Q 040015 267 NLLQVCLREKL--AGKKFLLVLDDV 289 (1399)
Q Consensus 267 ~~l~~~l~~~l--~~~r~LlvlDdv 289 (1399)
......+.+++ +++.+|+++||+
T Consensus 233 ~~~a~tiAEyfrd~G~~Vll~~Dsl 257 (442)
T PRK08927 233 AYLTLAIAEYFRDQGKDVLCLMDSV 257 (442)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCc
Confidence 11222344454 589999999999
No 453
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=91.83 E-value=0.3 Score=49.74 Aligned_cols=21 Identities=29% Similarity=0.556 Sum_probs=18.7
Q ss_pred EEEEcCCCchHHHHHHHHhcC
Q 040015 203 VPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 203 v~I~G~gG~GKTtLa~~v~~~ 223 (1399)
|.|+|+.|+||||+|+.+.+.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~ 21 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHR 21 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999873
No 454
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=91.80 E-value=0.17 Score=51.05 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=22.5
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhcC
Q 040015 199 NVSVVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 199 ~~~vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
...+++|+|..|+|||||++.+...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 4679999999999999999999874
No 455
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=91.77 E-value=0.63 Score=49.20 Aligned_cols=62 Identities=15% Similarity=0.258 Sum_probs=35.7
Q ss_pred HHHHHhcCcceEEEecCCcCC-Ccchhh-hhhcccCCCC-C-CcEEEEEcCChhhHHhcCccceEeCC
Q 040015 272 CLREKLAGKKFLLVLDDVWSR-RNDDWD-LICSPLKAGA-R-GSKIIITTRDSSIAASMGTVAAHHLE 335 (1399)
Q Consensus 272 ~l~~~l~~~r~LlvlDdv~~~-~~~~~~-~l~~~l~~~~-~-gs~ilvTtR~~~v~~~~~~~~~~~l~ 335 (1399)
.+...+..+.-++++|+.-.. +....+ .+...+.... . |..||++|.+...... .+.++.+.
T Consensus 131 ala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~--~d~i~~l~ 196 (204)
T cd03240 131 ALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDA--ADHIYRVE 196 (204)
T ss_pred HHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhh--CCEEEEEe
Confidence 345566678889999997442 122233 3444443222 2 5578889988776653 33455443
No 456
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=91.75 E-value=0.35 Score=57.01 Aligned_cols=90 Identities=16% Similarity=0.178 Sum_probs=55.0
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCcc-CHHHHHHHHHHHccCCC-------CCCCc----ch
Q 040015 199 NVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQF-DVLRVTTTILKSVTSKP-------ADVDD----DL 266 (1399)
Q Consensus 199 ~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~-------~~~~~----~~ 266 (1399)
...-++|.|.+|+|||||+.+++++... .+-+.++++-+.+.. .+.++..++...-.... .+... ..
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~~-~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a 220 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNISK-QHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRV 220 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHh-hCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHH
Confidence 3457899999999999999998875332 245777777776543 34455555544321111 01111 01
Q ss_pred HHHHHHHHHHh---cCcceEEEecCC
Q 040015 267 NLLQVCLREKL---AGKKFLLVLDDV 289 (1399)
Q Consensus 267 ~~l~~~l~~~l---~~~r~LlvlDdv 289 (1399)
......+.+++ +++.+|+++||+
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLl~~Dsl 246 (461)
T PRK12597 221 VLTGLTIAEYLRDEEKEDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHHHHHHhcCCceEEEeccc
Confidence 12233455565 378999999999
No 457
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=91.73 E-value=1.2 Score=47.92 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=21.7
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcC
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
..+++|+|..|.|||||++.++..
T Consensus 6 Ge~~~l~G~nGsGKSTLl~~l~G~ 29 (223)
T TIGR03771 6 GELLGLLGPNGAGKTTLLRAILGL 29 (223)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 469999999999999999999863
No 458
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=91.71 E-value=0.16 Score=49.70 Aligned_cols=39 Identities=26% Similarity=0.360 Sum_probs=27.4
Q ss_pred EEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCC
Q 040015 201 SVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSD 240 (1399)
Q Consensus 201 ~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 240 (1399)
++|.|+|..|+|||||++.+.+... +..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~-~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELK-RRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHH-HTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh-HcCCceEEEEEccC
Confidence 4899999999999999999998532 34455555666555
No 459
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=91.68 E-value=0.47 Score=53.71 Aligned_cols=21 Identities=24% Similarity=0.406 Sum_probs=18.7
Q ss_pred EEEEcCCCchHHHHHHHHhcC
Q 040015 203 VPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 203 v~I~G~gG~GKTtLa~~v~~~ 223 (1399)
+.+.|++|+||||+++.+.+.
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~ 22 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSAT 22 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999864
No 460
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=91.61 E-value=0.95 Score=51.21 Aligned_cols=49 Identities=14% Similarity=0.028 Sum_probs=34.3
Q ss_pred eEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCchhHH
Q 040015 331 AHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLLLAV 380 (1399)
Q Consensus 331 ~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 380 (1399)
++++++++.+|+..++...+-.+--. .....+...+++.-..+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~-~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLR-SRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccc-cCCCCHHHHHHHHHhcCCCHHHh
Confidence 78999999999999998876443221 11334456677777779999543
No 461
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=91.60 E-value=0.62 Score=50.24 Aligned_cols=48 Identities=15% Similarity=0.081 Sum_probs=31.4
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHH
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTI 251 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 251 (1399)
..++.|.|..|+||||+|.+++.... +.. ..+++++... +..++.+.+
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~-~~g-~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFL-QNG-YSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH-hCC-CcEEEEeCCC--CHHHHHHHH
Confidence 45999999999999999876655321 122 3456666433 445666655
No 462
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.59 E-value=1.3 Score=48.44 Aligned_cols=24 Identities=38% Similarity=0.549 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcC
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
..+++|+|..|+|||||++.++.-
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~i~Gl 50 (236)
T cd03253 27 GKKVAIVGPSGSGKSTILRLLFRF 50 (236)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 459999999999999999999863
No 463
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=91.57 E-value=0.49 Score=53.30 Aligned_cols=83 Identities=22% Similarity=0.218 Sum_probs=53.2
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHHHHccCCCCCC----CcchHHHHHHHH
Q 040015 199 NVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTILKSVTSKPADV----DDDLNLLQVCLR 274 (1399)
Q Consensus 199 ~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~----~~~~~~l~~~l~ 274 (1399)
...+|.|-|-+|+|||||..+++.+ ....- .+++|+-.+. ..+ .+--+++++....+. ..+.+.+.+.+.
T Consensus 92 ~Gs~iLIgGdPGIGKSTLLLQva~~--lA~~~-~vLYVsGEES--~~Q-iklRA~RL~~~~~~l~l~aEt~~e~I~~~l~ 165 (456)
T COG1066 92 PGSVILIGGDPGIGKSTLLLQVAAR--LAKRG-KVLYVSGEES--LQQ-IKLRADRLGLPTNNLYLLAETNLEDIIAELE 165 (456)
T ss_pred cccEEEEccCCCCCHHHHHHHHHHH--HHhcC-cEEEEeCCcC--HHH-HHHHHHHhCCCccceEEehhcCHHHHHHHHH
Confidence 3579999999999999999999884 33333 6777765543 333 233456666443221 112455444444
Q ss_pred HHhcCcceEEEecCCc
Q 040015 275 EKLAGKKFLLVLDDVW 290 (1399)
Q Consensus 275 ~~l~~~r~LlvlDdv~ 290 (1399)
+.+.-++|+|-+.
T Consensus 166 ---~~~p~lvVIDSIQ 178 (456)
T COG1066 166 ---QEKPDLVVIDSIQ 178 (456)
T ss_pred ---hcCCCEEEEeccc
Confidence 3678899999983
No 464
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=91.54 E-value=4.9 Score=48.16 Aligned_cols=54 Identities=15% Similarity=0.196 Sum_probs=37.9
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHHHHcc
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTILKSVT 256 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 256 (1399)
..++.|.|.+|+|||++|..++.+...+.. ..++|++.. .+..++...++....
T Consensus 194 g~liviag~pg~GKT~~al~ia~~~a~~~g-~~v~~fSlE--m~~~~l~~Rl~~~~~ 247 (421)
T TIGR03600 194 GDLIVIGARPSMGKTTLALNIAENVALREG-KPVLFFSLE--MSAEQLGERLLASKS 247 (421)
T ss_pred CceEEEEeCCCCCHHHHHHHHHHHHHHhCC-CcEEEEECC--CCHHHHHHHHHHHHc
Confidence 458889999999999999999864322222 346676654 366777777776544
No 465
>PRK09099 type III secretion system ATPase; Provisional
Probab=91.53 E-value=0.52 Score=55.30 Aligned_cols=87 Identities=17% Similarity=0.229 Sum_probs=49.2
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHHHHccCCCC-----CCCc-ch-----HH
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTILKSVTSKPA-----DVDD-DL-----NL 268 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~-~~-----~~ 268 (1399)
...++|.|..|+|||||++.++...... ..+++..-.+...+.+..+.+...-..... ..++ .. ..
T Consensus 163 Gq~~~I~G~sG~GKTtLl~~ia~~~~~d---~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a~~ 239 (441)
T PRK09099 163 GQRMGIFAPAGVGKSTLMGMFARGTQCD---VNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKAAY 239 (441)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCC---eEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHHHH
Confidence 5688999999999999999998743221 233433333344444554544433211110 0111 01 11
Q ss_pred HHHHHHHHh--cCcceEEEecCC
Q 040015 269 LQVCLREKL--AGKKFLLVLDDV 289 (1399)
Q Consensus 269 l~~~l~~~l--~~~r~LlvlDdv 289 (1399)
....+.+++ +++.+|+++||+
T Consensus 240 ~a~tiAEyfrd~G~~VLl~~Dsl 262 (441)
T PRK09099 240 VATAIAEYFRDRGLRVLLMMDSL 262 (441)
T ss_pred HHHHHHHHHHHcCCCEEEeccch
Confidence 222344454 588999999999
No 466
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.52 E-value=0.024 Score=56.77 Aligned_cols=62 Identities=23% Similarity=0.383 Sum_probs=41.2
Q ss_pred cccCCCcceEeecCCCCCccCCC---CCCCCCcceEEeccCCCCCCCcccccccCCCccEEEEcC
Q 040015 1273 MYILTSLQEFSIHGCSSLMSFPE---GGLPPNLISLSILDCENLKPSSEWGLHRLTCLADFSFGG 1334 (1399)
Q Consensus 1273 ~~~l~~L~~L~l~~c~~l~~l~~---~~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~ 1334 (1399)
+.++++++.|.+.+|..+.+.-. ++..++|+.|++++|+.|++.....+..+++|+.|.|.+
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 34566777777777765543211 125678888888888888777766677777777777765
No 467
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=91.50 E-value=0.21 Score=49.94 Aligned_cols=24 Identities=25% Similarity=0.517 Sum_probs=21.9
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcC
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
..++.|.|+.|+|||||+++++.+
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~ 27 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLED 27 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 468899999999999999999984
No 468
>PRK00889 adenylylsulfate kinase; Provisional
Probab=91.49 E-value=0.16 Score=52.46 Aligned_cols=24 Identities=33% Similarity=0.450 Sum_probs=21.9
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcC
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
..+|.|+|++|+||||+|+.++..
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~ 27 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEK 27 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 569999999999999999999874
No 469
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=91.49 E-value=0.51 Score=57.28 Aligned_cols=47 Identities=19% Similarity=0.309 Sum_probs=37.3
Q ss_pred CccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcC
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
..++|....++++.+.+..-. ..-.-|.|.|..|+||+.+|+.+++.
T Consensus 219 ~~iiG~S~~m~~~~~~i~~~A-----~s~~pVLI~GE~GTGKe~~A~~IH~~ 265 (538)
T PRK15424 219 GDLLGQSPQMEQVRQTILLYA-----RSSAAVLIQGETGTGKELAAQAIHRE 265 (538)
T ss_pred hheeeCCHHHHHHHHHHHHHh-----CCCCcEEEECCCCCCHHHHHHHHHHh
Confidence 358999999998888875432 12346779999999999999999874
No 470
>PRK12678 transcription termination factor Rho; Provisional
Probab=91.46 E-value=0.41 Score=56.66 Aligned_cols=86 Identities=24% Similarity=0.255 Sum_probs=46.3
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCccccccccceE-EEEeCCccCHHHHHHHHHHHccCC----CCCCCc----chHHHH
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKV-WVCVSDQFDVLRVTTTILKSVTSK----PADVDD----DLNLLQ 270 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~-wv~~~~~~~~~~~~~~i~~~l~~~----~~~~~~----~~~~l~ 270 (1399)
..-..|+|.+|+|||||++.+++... ..+-++.+ .+-|.+.... + .++.+.+... ..+... ....+.
T Consensus 416 GQR~LIvgpp~aGKTtLL~~IAn~i~-~n~~~~~~ivvLIgERpeE--V-tdm~rsVkgeVVasT~D~p~~~~~~~a~~a 491 (672)
T PRK12678 416 GQRGLIVSPPKAGKTTILQNIANAIT-TNNPECHLMVVLVDERPEE--V-TDMQRSVKGEVIASTFDRPPSDHTTVAELA 491 (672)
T ss_pred CCEeEEeCCCCCCHHHHHHHHHHHHh-hcCCCeEEEEEEEeCchhh--H-HHHHHhccceEEEECCCCCHHHHHHHHHHH
Confidence 45678999999999999999998321 11223333 3334443221 1 2233333111 111111 112222
Q ss_pred HHHHHHh--cCcceEEEecCC
Q 040015 271 VCLREKL--AGKKFLLVLDDV 289 (1399)
Q Consensus 271 ~~l~~~l--~~~r~LlvlDdv 289 (1399)
..+.+++ .++.+||++|++
T Consensus 492 i~~Ae~fre~G~dVlillDSl 512 (672)
T PRK12678 492 IERAKRLVELGKDVVVLLDSI 512 (672)
T ss_pred HHHHHHHHHcCCCEEEEEeCc
Confidence 3344444 689999999999
No 471
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=91.45 E-value=0.3 Score=50.42 Aligned_cols=42 Identities=26% Similarity=0.274 Sum_probs=31.9
Q ss_pred CccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhc
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
.+++|-+..+..+.-.... ..-+.++|.+|+|||++|+.+..
T Consensus 3 ~dI~GQe~aKrAL~iAAaG---------~h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAG---------GHHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHC---------C--EEEES-CCCTHHHHHHHHHH
T ss_pred hhhcCcHHHHHHHHHHHcC---------CCCeEEECCCCCCHHHHHHHHHH
Confidence 4688998888887766643 24678999999999999999964
No 472
>PRK05973 replicative DNA helicase; Provisional
Probab=91.45 E-value=0.69 Score=49.51 Aligned_cols=48 Identities=15% Similarity=0.059 Sum_probs=32.9
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHH
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTI 251 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 251 (1399)
..++.|.|.+|+|||++|.++..... ..=..+++++.... ..++...+
T Consensus 64 Gsl~LIaG~PG~GKT~lalqfa~~~a--~~Ge~vlyfSlEes--~~~i~~R~ 111 (237)
T PRK05973 64 GDLVLLGARPGHGKTLLGLELAVEAM--KSGRTGVFFTLEYT--EQDVRDRL 111 (237)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHH--hcCCeEEEEEEeCC--HHHHHHHH
Confidence 46889999999999999999876432 22235677766554 44555544
No 473
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=91.42 E-value=0.64 Score=56.86 Aligned_cols=46 Identities=20% Similarity=0.228 Sum_probs=35.9
Q ss_pred ccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcC
Q 040015 173 CVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 173 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
.++|+...+.++.+.+..-. .....|.|+|.+|+|||++|+.+++.
T Consensus 139 ~lig~s~~~~~l~~~~~~~~-----~~~~~vli~Ge~GtGK~~lA~~ih~~ 184 (469)
T PRK10923 139 DIIGEAPAMQDVFRIIGRLS-----RSSISVLINGESGTGKELVAHALHRH 184 (469)
T ss_pred cceecCHHHHHHHHHHHHHh-----ccCCeEEEEeCCCCcHHHHHHHHHhc
Confidence 58899888888877775432 22345779999999999999999874
No 474
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=91.40 E-value=0.16 Score=53.86 Aligned_cols=22 Identities=23% Similarity=0.134 Sum_probs=20.5
Q ss_pred EEEEEEcCCCchHHHHHHHHhc
Q 040015 201 SVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 201 ~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
.+++|+|..|.||||+.+.+..
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 6899999999999999999984
No 475
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=91.40 E-value=0.62 Score=50.63 Aligned_cols=86 Identities=22% Similarity=0.281 Sum_probs=48.0
Q ss_pred cEEEEEEcCCCchHHHHH-HHHhcCccccccccce-EEEEeCCcc-CHHHHHHHHHHHccCCC-----CCCCc-chHH--
Q 040015 200 VSVVPIVGMGGIGKTTVA-QLVYNDSRVDGRFDLK-VWVCVSDQF-DVLRVTTTILKSVTSKP-----ADVDD-DLNL-- 268 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa-~~v~~~~~~~~~f~~~-~wv~~~~~~-~~~~~~~~i~~~l~~~~-----~~~~~-~~~~-- 268 (1399)
..-++|.|..|+|||+|| ..+.+.. +-+.+ +++-+.+.. ...++.+++.+.-..+. ...++ ....
T Consensus 69 GQr~~Ifg~~g~GKt~L~l~~i~~~~----~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 144 (274)
T cd01132 69 GQRELIIGDRQTGKTAIAIDTIINQK----GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYL 144 (274)
T ss_pred CCEEEeeCCCCCCccHHHHHHHHHhc----CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHH
Confidence 456799999999999996 6666521 22344 566666553 34555555554321111 01111 0111
Q ss_pred ---HHHHHHHHh--cCcceEEEecCC
Q 040015 269 ---LQVCLREKL--AGKKFLLVLDDV 289 (1399)
Q Consensus 269 ---l~~~l~~~l--~~~r~LlvlDdv 289 (1399)
..-.+.+++ +++.+|+|+||+
T Consensus 145 a~~~a~aiAE~fr~~G~~Vlvl~Dsl 170 (274)
T cd01132 145 APYTGCAMGEYFMDNGKHALIIYDDL 170 (274)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEcCh
Confidence 122333443 588999999999
No 476
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=91.39 E-value=1.2 Score=46.84 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=21.7
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcC
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
..+++|.|..|.|||||.+.++.-
T Consensus 35 Ge~~~l~G~nGsGKStLl~~i~Gl 58 (194)
T cd03213 35 GELTAIMGPSGAGKSTLLNALAGR 58 (194)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999873
No 477
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=91.38 E-value=0.31 Score=53.62 Aligned_cols=21 Identities=24% Similarity=0.563 Sum_probs=19.1
Q ss_pred EEEEcCCCchHHHHHHHHhcC
Q 040015 203 VPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 203 v~I~G~gG~GKTtLa~~v~~~ 223 (1399)
|.++|++|+||||+|+.+...
T Consensus 2 Ivl~G~pGSGKST~a~~La~~ 22 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKK 22 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 679999999999999999873
No 478
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=91.37 E-value=0.12 Score=54.76 Aligned_cols=21 Identities=43% Similarity=0.632 Sum_probs=19.6
Q ss_pred EEEEEcCCCchHHHHHHHHhc
Q 040015 202 VVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 202 vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
+|+|.|..|+||||+|+.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999976
No 479
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=91.31 E-value=1.3 Score=49.75 Aligned_cols=48 Identities=23% Similarity=0.263 Sum_probs=35.1
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCcc-CHHHHHHHH
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQF-DVLRVTTTI 251 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i 251 (1399)
...++|.|..|+|||+|++++++.. +-+.++++-+.+.. .+.+++.++
T Consensus 157 Gqr~~I~G~~G~GKT~L~~~Iak~~----~~dvvVyv~iGERg~Ev~e~l~ef 205 (369)
T cd01134 157 GGTAAIPGPFGCGKTVIQQSLSKYS----NSDIVIYVGCGERGNEMTEVLEEF 205 (369)
T ss_pred CCEEEEECCCCCChHHHHHHHHhCC----CCCEEEEEEeCCChHHHHHHHHHH
Confidence 4578999999999999999999853 23567888886653 344455544
No 480
>PRK05922 type III secretion system ATPase; Validated
Probab=91.30 E-value=1.1 Score=52.48 Aligned_cols=86 Identities=12% Similarity=0.234 Sum_probs=48.4
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCc-cCHHHHHHHHHHHccCCCC-----CCCc------chH
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQ-FDVLRVTTTILKSVTSKPA-----DVDD------DLN 267 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~-----~~~~------~~~ 267 (1399)
...++|+|..|+|||||.+.+.+.. .-+..+.+.++.. ....+.+.+.......... ..++ ...
T Consensus 157 GqrigI~G~nG~GKSTLL~~Ia~~~----~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~ 232 (434)
T PRK05922 157 GQRIGVFSEPGSGKSSLLSTIAKGS----KSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAG 232 (434)
T ss_pred CcEEEEECCCCCChHHHHHHHhccC----CCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHH
Confidence 4568999999999999999998742 2233344334332 2333444444333222110 0111 011
Q ss_pred HHHHHHHHHh--cCcceEEEecCC
Q 040015 268 LLQVCLREKL--AGKKFLLVLDDV 289 (1399)
Q Consensus 268 ~l~~~l~~~l--~~~r~LlvlDdv 289 (1399)
.....+.+++ +++++|+++||+
T Consensus 233 ~~a~tiAEyfrd~G~~VLl~~Dsl 256 (434)
T PRK05922 233 RAAMTIAEYFRDQGHRVLFIMDSL 256 (434)
T ss_pred HHHHHHHHHHHHcCCCEEEeccch
Confidence 2223345555 589999999999
No 481
>CHL00206 ycf2 Ycf2; Provisional
Probab=91.27 E-value=1.4 Score=59.59 Aligned_cols=25 Identities=16% Similarity=0.348 Sum_probs=21.9
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCc
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDS 224 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~ 224 (1399)
.+=|.++|++|+|||.||++++.+.
T Consensus 1630 PKGILLiGPPGTGKTlLAKALA~es 1654 (2281)
T CHL00206 1630 SRGILVIGSIGTGRSYLVKYLATNS 1654 (2281)
T ss_pred CCceEEECCCCCCHHHHHHHHHHhc
Confidence 4567799999999999999999864
No 482
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=91.24 E-value=1 Score=57.74 Aligned_cols=178 Identities=19% Similarity=0.190 Sum_probs=84.3
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhcCccc--------------cccccceEEEEeCCccCHHHHHHHHHHHccCCCCCCCc
Q 040015 199 NVSVVPIVGMGGIGKTTVAQLVYNDSRV--------------DGRFDLKVWVCVSDQFDVLRVTTTILKSVTSKPADVDD 264 (1399)
Q Consensus 199 ~~~vv~I~G~gG~GKTtLa~~v~~~~~~--------------~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~ 264 (1399)
+.+++.|+|+.+.||||+.+.+.-..-. -..|+ .++..++..-++..-+..+. .
T Consensus 326 ~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~-~i~~~ig~~~si~~~lStfS-----------~ 393 (782)
T PRK00409 326 DKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFK-EIFADIGDEQSIEQSLSTFS-----------G 393 (782)
T ss_pred CceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccc-eEEEecCCccchhhchhHHH-----------H
Confidence 3578999999999999999988532100 01122 12223322222111110000 0
Q ss_pred chHHHHHHHHHHhcCcceEEEecCCcCC-Ccchhhhh----hcccCCCCCCcEEEEEcCChhhHHhcCccceEeCCCCCc
Q 040015 265 DLNLLQVCLREKLAGKKFLLVLDDVWSR-RNDDWDLI----CSPLKAGARGSKIIITTRDSSIAASMGTVAAHHLECLAF 339 (1399)
Q Consensus 265 ~~~~l~~~l~~~l~~~r~LlvlDdv~~~-~~~~~~~l----~~~l~~~~~gs~ilvTtR~~~v~~~~~~~~~~~l~~L~~ 339 (1399)
...+....++.. +.+-|+++|..-.- +..+-..+ ...+. ..|+.+|+||....++........+.-..+..
T Consensus 394 ~m~~~~~Il~~~--~~~sLvLlDE~~~GtDp~eg~ala~aile~l~--~~~~~vIitTH~~el~~~~~~~~~v~~~~~~~ 469 (782)
T PRK00409 394 HMTNIVRILEKA--DKNSLVLFDELGAGTDPDEGAALAISILEYLR--KRGAKIIATTHYKELKALMYNREGVENASVEF 469 (782)
T ss_pred HHHHHHHHHHhC--CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--HCCCEEEEECChHHHHHHHhcCCCeEEEEEEE
Confidence 112222222222 47789999998542 11122222 22222 24789999999988876554322111111111
Q ss_pred -cchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCchhHHHHHHHHHhcCCChHHHHHHHh
Q 040015 340 -EDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLLLAVKRMGIILRSREDKGEWYDMLN 401 (1399)
Q Consensus 340 -~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~~l~ 401 (1399)
++... +.... ..+.+ . ...|-+|++++ |+|-.+.--|.-+... +...+.++++
T Consensus 470 d~~~l~-~~Ykl-~~G~~---g--~S~a~~iA~~~-Glp~~ii~~A~~~~~~-~~~~~~~li~ 523 (782)
T PRK00409 470 DEETLR-PTYRL-LIGIP---G--KSNAFEIAKRL-GLPENIIEEAKKLIGE-DKEKLNELIA 523 (782)
T ss_pred ecCcCc-EEEEE-eeCCC---C--CcHHHHHHHHh-CcCHHHHHHHHHHHhh-hhhHHHHHHH
Confidence 11111 11111 11111 1 23467777776 7888888777766544 2334444443
No 483
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=91.21 E-value=0.71 Score=53.99 Aligned_cols=86 Identities=26% Similarity=0.343 Sum_probs=49.0
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCc-cCHHHHHHHHHHHccCCC-----CCCCc-chHH----
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQ-FDVLRVTTTILKSVTSKP-----ADVDD-DLNL---- 268 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~-----~~~~~-~~~~---- 268 (1399)
...++|+|..|+|||||++.+.+.. +.+..+++.+.+. ..+.+.+.+..+.-.... ...++ ....
T Consensus 155 GqrigI~G~sG~GKSTLL~~I~~~~----~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a~ 230 (433)
T PRK07594 155 GQRVGIFSAPGVGKSTLLAMLCNAP----DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRAL 230 (433)
T ss_pred CCEEEEECCCCCCccHHHHHhcCCC----CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHHH
Confidence 5688999999999999999998742 2344555555443 334344444332110000 00111 0111
Q ss_pred -HHHHHHHHh--cCcceEEEecCC
Q 040015 269 -LQVCLREKL--AGKKFLLVLDDV 289 (1399)
Q Consensus 269 -l~~~l~~~l--~~~r~LlvlDdv 289 (1399)
....+.+++ +++++|+++||+
T Consensus 231 ~~a~tiAEyfrd~G~~VLl~~Dsl 254 (433)
T PRK07594 231 FVATTIAEFFRDNGKRVVLLADSL 254 (433)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeCH
Confidence 122344554 588999999999
No 484
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=91.17 E-value=0.16 Score=49.98 Aligned_cols=20 Identities=45% Similarity=0.791 Sum_probs=18.6
Q ss_pred EEEEEcCCCchHHHHHHHHh
Q 040015 202 VVPIVGMGGIGKTTVAQLVY 221 (1399)
Q Consensus 202 vv~I~G~gG~GKTtLa~~v~ 221 (1399)
.|+|.|.+|+||||+|+.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999887
No 485
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=91.13 E-value=0.15 Score=52.84 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=20.6
Q ss_pred EEEEEEcCCCchHHHHHHHHhcC
Q 040015 201 SVVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 201 ~vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
.++.|+|+.|+||||+++.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999774
No 486
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=91.12 E-value=0.92 Score=51.37 Aligned_cols=25 Identities=32% Similarity=0.500 Sum_probs=22.5
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhcC
Q 040015 199 NVSVVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 199 ~~~vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
...+++++|++|+||||++..++..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~ 137 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHK 137 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4689999999999999999999874
No 487
>PRK00131 aroK shikimate kinase; Reviewed
Probab=91.11 E-value=0.15 Score=52.64 Aligned_cols=24 Identities=25% Similarity=0.495 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcC
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
...|.|+|++|+||||+|+.++..
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~ 27 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKR 27 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Confidence 458899999999999999999973
No 488
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=91.04 E-value=0.13 Score=53.62 Aligned_cols=21 Identities=33% Similarity=0.398 Sum_probs=19.4
Q ss_pred EEEEEcCCCchHHHHHHHHhc
Q 040015 202 VVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 202 vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
||.|+|++|+||||+|+.++.
T Consensus 1 ~i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999987
No 489
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=91.02 E-value=3.4 Score=43.84 Aligned_cols=24 Identities=29% Similarity=0.457 Sum_probs=21.7
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcC
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
..+++|.|..|.|||||++.++.-
T Consensus 31 G~~~~i~G~nG~GKSTLl~~i~G~ 54 (204)
T cd03250 31 GELVAIVGPVGSGKSSLLSALLGE 54 (204)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCc
Confidence 458999999999999999999874
No 490
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=90.99 E-value=0.74 Score=53.97 Aligned_cols=89 Identities=10% Similarity=0.234 Sum_probs=54.4
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCcc-CHHHHHHHHHHHccCCCC-----CCCc-c-----hH
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQF-DVLRVTTTILKSVTSKPA-----DVDD-D-----LN 267 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~-----~~~~-~-----~~ 267 (1399)
..-++|.|.+|+|||+|+.++.++.. +.+-+.++++-+.+.. .+.++.+++...-..+.. ..++ . ..
T Consensus 138 GQr~~Ifg~~G~GKt~l~~~~~~~~~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~ 216 (449)
T TIGR03305 138 GGKAGLFGGAGVGKTVLLTEMIHNMV-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVG 216 (449)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHH-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHH
Confidence 45789999999999999999987532 2334678888876654 344455554432111110 1111 0 11
Q ss_pred HHHHHHHHHh---cCcceEEEecCC
Q 040015 268 LLQVCLREKL---AGKKFLLVLDDV 289 (1399)
Q Consensus 268 ~l~~~l~~~l---~~~r~LlvlDdv 289 (1399)
.....+.+++ +++++|+++||+
T Consensus 217 ~~a~tiAEyfrd~~G~~VLl~~Dsl 241 (449)
T TIGR03305 217 HTALTMAEYFRDDEKQDVLLLIDNI 241 (449)
T ss_pred HHHHHHHHHHHHhcCCceEEEecCh
Confidence 2233455665 468999999999
No 491
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=90.98 E-value=0.67 Score=44.34 Aligned_cols=29 Identities=24% Similarity=0.521 Sum_probs=23.4
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCccccccc
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSRVDGRF 230 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f 230 (1399)
-.|+.|.|.+|.||||+++++.+ +.+-.|
T Consensus 12 k~~i~vmGvsGsGKSTigk~L~~--~l~~~F 40 (191)
T KOG3354|consen 12 KYVIVVMGVSGSGKSTIGKALSE--ELGLKF 40 (191)
T ss_pred ceeEEEEecCCCChhhHHHHHHH--HhCCcc
Confidence 34899999999999999999988 444334
No 492
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=90.96 E-value=1.2 Score=47.46 Aligned_cols=119 Identities=13% Similarity=0.073 Sum_probs=57.8
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHHHHccCCCC---C---CCcchHHHHHHH
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTILKSVTSKPA---D---VDDDLNLLQVCL 273 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---~---~~~~~~~l~~~l 273 (1399)
.+++.|.|+.|.||||+.+.+.-..- ..+-...+|..-.. . ..+.+|...++.... . ...+..++...+
T Consensus 31 g~~~~itG~N~~GKStll~~i~~~~~-la~~G~~v~a~~~~-~---~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~il 105 (222)
T cd03287 31 GYCQIITGPNMGGKSSYIRQVALITI-MAQIGSFVPASSAT-L---SIFDSVLTRMGASDSIQHGMSTFMVELSETSHIL 105 (222)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH-HHhCCCEEEcCceE-E---eccceEEEEecCccccccccchHHHHHHHHHHHH
Confidence 46889999999999999998875211 11111112211000 0 001111111111111 0 000123333333
Q ss_pred HHHhcCcceEEEecCCcCCCc--c--h-hhhhhcccCCCCCCcEEEEEcCChhhHHhc
Q 040015 274 REKLAGKKFLLVLDDVWSRRN--D--D-WDLICSPLKAGARGSKIIITTRDSSIAASM 326 (1399)
Q Consensus 274 ~~~l~~~r~LlvlDdv~~~~~--~--~-~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~ 326 (1399)
+. .+++.|+++|....-.. + . -..+...+... .++.+|++|.+..++...
T Consensus 106 ~~--~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~-~~~~~i~~TH~~~l~~~~ 160 (222)
T cd03287 106 SN--CTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEE-KKCLVLFVTHYPSLGEIL 160 (222)
T ss_pred Hh--CCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhc-cCCeEEEEcccHHHHHHH
Confidence 22 35789999999733210 1 1 11223333322 578999999998887654
No 493
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=90.95 E-value=0.27 Score=51.40 Aligned_cols=23 Identities=39% Similarity=0.549 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCchHHHHHHHHhc
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
..+++|+|..|.||||||+.++-
T Consensus 33 Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 33 GETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhc
Confidence 46999999999999999999985
No 494
>PRK06936 type III secretion system ATPase; Provisional
Probab=90.94 E-value=1 Score=52.68 Aligned_cols=87 Identities=21% Similarity=0.319 Sum_probs=51.0
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCcc-CHHHHHHHHHHHccCCCC-----CCCc-chH----
Q 040015 199 NVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQF-DVLRVTTTILKSVTSKPA-----DVDD-DLN---- 267 (1399)
Q Consensus 199 ~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~-----~~~~-~~~---- 267 (1399)
+...++|.|..|+|||||.+.+++... -+.++++-+.+.. .+.++....+..-+.+.. ..++ ...
T Consensus 161 ~Gq~~~I~G~sG~GKStLl~~Ia~~~~----~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (439)
T PRK06936 161 EGQRMGIFAAAGGGKSTLLASLIRSAE----VDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKA 236 (439)
T ss_pred CCCEEEEECCCCCChHHHHHHHhcCCC----CCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHH
Confidence 356889999999999999999998532 2566777676554 333333333322111110 0111 011
Q ss_pred -HHHHHHHHHh--cCcceEEEecCC
Q 040015 268 -LLQVCLREKL--AGKKFLLVLDDV 289 (1399)
Q Consensus 268 -~l~~~l~~~l--~~~r~LlvlDdv 289 (1399)
.....+.+++ +++++|+++||+
T Consensus 237 ~~~a~tiAEyfrd~G~~Vll~~Dsl 261 (439)
T PRK06936 237 GFVATSIAEYFRDQGKRVLLLMDSV 261 (439)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccch
Confidence 1122344444 689999999999
No 495
>PRK13947 shikimate kinase; Provisional
Probab=90.85 E-value=0.15 Score=52.39 Aligned_cols=21 Identities=38% Similarity=0.563 Sum_probs=19.5
Q ss_pred EEEEEcCCCchHHHHHHHHhc
Q 040015 202 VVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 202 vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
-|.|+|++|+||||+|+.+++
T Consensus 3 ~I~l~G~~GsGKst~a~~La~ 23 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVAT 23 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999987
No 496
>PLN02796 D-glycerate 3-kinase
Probab=90.85 E-value=1 Score=50.74 Aligned_cols=25 Identities=28% Similarity=0.187 Sum_probs=22.5
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhcC
Q 040015 199 NVSVVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 199 ~~~vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
..-+|+|.|..|+||||||+.+...
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~l 123 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVYL 123 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHH
Confidence 4678999999999999999999873
No 497
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=90.84 E-value=0.95 Score=48.90 Aligned_cols=48 Identities=17% Similarity=0.246 Sum_probs=33.1
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHH
Q 040015 199 NVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTT 250 (1399)
Q Consensus 199 ~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 250 (1399)
...++.|.|.+|+|||++|.+++.... + .=..++|++.... +.++.+.
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~-~-~g~~~~y~s~e~~--~~~l~~~ 62 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGL-K-NGEKAMYISLEER--EERILGY 62 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-h-CCCeEEEEECCCC--HHHHHHH
Confidence 467999999999999999999876321 1 1245778877663 4444433
No 498
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=90.84 E-value=0.84 Score=53.38 Aligned_cols=123 Identities=15% Similarity=0.152 Sum_probs=63.7
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHHHHccCCC-------CCCCc----chHH
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTILKSVTSKP-------ADVDD----DLNL 268 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-------~~~~~----~~~~ 268 (1399)
...++|+|..|+|||||++.++..... ...++...-.+...+.+.++..+..-+... .+... ....
T Consensus 156 Gqri~I~G~sG~GKTtLl~~Ia~~~~~---~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~~ 232 (432)
T PRK06793 156 GQKIGIFAGSGVGKSTLLGMIAKNAKA---DINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAAK 232 (432)
T ss_pred CcEEEEECCCCCChHHHHHHHhccCCC---CeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHHHH
Confidence 457899999999999999999875321 122333222333555566565554422111 11111 1122
Q ss_pred HHHHHHHHh--cCcceEEEecCCcCCCcchhhhhhcccCCC-CCCcEEEEEcCChhhHHhc
Q 040015 269 LQVCLREKL--AGKKFLLVLDDVWSRRNDDWDLICSPLKAG-ARGSKIIITTRDSSIAASM 326 (1399)
Q Consensus 269 l~~~l~~~l--~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~-~~gs~ilvTtR~~~v~~~~ 326 (1399)
....+.+++ +++..|+++||+-.-. +....+...+..- ..|--..+.|.-..+....
T Consensus 233 ~a~~iAEyfr~~G~~VLlilDslTr~a-~A~reisl~~~e~p~~G~~~~~~s~l~~L~ERa 292 (432)
T PRK06793 233 LATSIAEYFRDQGNNVLLMMDSVTRFA-DARRSVDIAVKELPIGGKTLLMESYMKKLLERS 292 (432)
T ss_pred HHHHHHHHHHHcCCcEEEEecchHHHH-HHHHHHHHHhcCCCCCCeeeeeeccchhHHHHh
Confidence 223344444 5889999999984321 2333333222111 1244455555555555443
No 499
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=90.82 E-value=0.31 Score=54.72 Aligned_cols=48 Identities=23% Similarity=0.244 Sum_probs=32.7
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHH
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTT 249 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 249 (1399)
.+++.+.|.|||||||+|.+.+-. .......++-|+.....+..+++.
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~--lA~~g~kvLlvStDPAhsL~d~f~ 49 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVK--LAESGKKVLLVSTDPAHSLGDVFD 49 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHH--HHHcCCcEEEEEeCCCCchHhhhc
Confidence 478999999999999999886542 222334467777666555544443
No 500
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=90.80 E-value=1 Score=52.83 Aligned_cols=86 Identities=20% Similarity=0.239 Sum_probs=48.1
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCc-cCHHHHHHHHHHHccCCC-------CCCCc----chH
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQ-FDVLRVTTTILKSVTSKP-------ADVDD----DLN 267 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~-------~~~~~----~~~ 267 (1399)
...++|+|..|+|||||++.+.... ..+.++...+... ....++...+...-.... .+... ...
T Consensus 168 GqrigI~G~sG~GKSTLl~~I~g~~----~~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~a~ 243 (451)
T PRK05688 168 GQRLGLFAGTGVGKSVLLGMMTRFT----EADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRAA 243 (451)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC----CCCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHHHH
Confidence 4578999999999999999998732 1233333334332 234444444443322111 01111 011
Q ss_pred HHHHHHHHHh--cCcceEEEecCC
Q 040015 268 LLQVCLREKL--AGKKFLLVLDDV 289 (1399)
Q Consensus 268 ~l~~~l~~~l--~~~r~LlvlDdv 289 (1399)
.....+.+++ +++++|+++||+
T Consensus 244 ~~a~aiAEyfrd~G~~VLl~~Dsl 267 (451)
T PRK05688 244 MYCTRIAEYFRDKGKNVLLLMDSL 267 (451)
T ss_pred HHHHHHHHHHHHCCCCEEEEecch
Confidence 1222344444 689999999999
Done!